Query 038527
Match_columns 630
No_of_seqs 173 out of 195
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 11:59:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03469 XH: XH domain; Inter 100.0 2.5E-64 5.5E-69 465.7 13.4 131 496-628 1-132 (132)
2 PF03468 XS: XS domain; Inter 100.0 6.7E-46 1.4E-50 338.0 6.2 116 114-231 1-116 (116)
3 PF03470 zf-XS: XS zinc finger 99.6 1E-16 2.2E-21 122.5 3.0 42 42-83 1-43 (43)
4 PF07888 CALCOCO1: Calcium bin 97.1 0.19 4.1E-06 57.5 25.0 36 391-426 262-297 (546)
5 PF07888 CALCOCO1: Calcium bin 97.0 0.81 1.8E-05 52.6 29.2 45 435-479 370-418 (546)
6 KOG0161 Myosin class II heavy 96.6 0.98 2.1E-05 58.5 28.5 90 215-304 783-885 (1930)
7 TIGR02169 SMC_prok_A chromosom 96.6 2.7 5.8E-05 51.1 30.9 17 143-159 118-134 (1164)
8 PF10174 Cast: RIM-binding pro 96.5 0.98 2.1E-05 54.0 25.7 216 257-479 399-635 (775)
9 KOG0996 Structural maintenance 96.5 1.2 2.6E-05 54.8 26.2 226 230-455 210-491 (1293)
10 KOG0996 Structural maintenance 96.5 2.6 5.6E-05 52.0 28.9 57 528-599 678-743 (1293)
11 PRK11637 AmiB activator; Provi 95.5 3.7 8.1E-05 45.5 23.1 47 317-363 169-215 (428)
12 COG1196 Smc Chromosome segrega 95.3 12 0.00025 47.0 31.3 151 435-588 445-632 (1163)
13 KOG0976 Rho/Rac1-interacting s 95.1 11 0.00023 45.4 26.9 27 320-346 258-284 (1265)
14 TIGR02169 SMC_prok_A chromosom 94.9 12 0.00027 45.5 31.7 11 40-50 25-35 (1164)
15 TIGR02168 SMC_prok_B chromosom 94.9 12 0.00027 45.3 30.5 30 259-288 679-708 (1179)
16 COG1196 Smc Chromosome segrega 94.9 15 0.00033 46.0 31.0 14 145-158 122-135 (1163)
17 KOG0964 Structural maintenance 94.6 7.8 0.00017 47.4 23.3 69 409-481 394-473 (1200)
18 PRK11637 AmiB activator; Provi 94.5 9.5 0.00021 42.3 26.2 48 379-426 168-215 (428)
19 KOG4643 Uncharacterized coiled 94.5 16 0.00035 44.9 25.9 76 333-408 416-501 (1195)
20 PF15619 Lebercilin: Ciliary p 94.5 6.1 0.00013 39.9 20.2 136 292-468 57-193 (194)
21 PRK02224 chromosome segregatio 94.5 15 0.00032 44.2 26.9 12 40-51 25-36 (880)
22 PF12128 DUF3584: Protein of u 94.4 19 0.00041 45.3 29.8 97 384-480 409-520 (1201)
23 PF10174 Cast: RIM-binding pro 93.9 19 0.00041 43.5 26.5 65 395-462 238-313 (775)
24 TIGR02168 SMC_prok_B chromosom 93.9 20 0.00043 43.5 31.1 18 581-598 634-651 (1179)
25 KOG0161 Myosin class II heavy 93.2 39 0.00084 44.7 31.0 47 380-426 1089-1139(1930)
26 PF08317 Spc7: Spc7 kinetochor 93.0 7.7 0.00017 41.7 18.4 40 388-427 251-291 (325)
27 KOG0978 E3 ubiquitin ligase in 93.0 24 0.00053 42.0 23.5 100 328-427 513-623 (698)
28 KOG0612 Rho-associated, coiled 92.8 34 0.00074 43.0 26.8 181 277-462 493-693 (1317)
29 KOG0250 DNA repair protein RAD 92.8 32 0.0007 42.7 27.0 53 431-483 866-920 (1074)
30 KOG1029 Endocytic adaptor prot 92.6 17 0.00036 43.8 21.1 56 409-464 448-507 (1118)
31 TIGR00606 rad50 rad50. This fa 92.5 39 0.00085 43.0 28.1 10 525-534 1145-1154(1311)
32 KOG0579 Ste20-like serine/thre 92.3 30 0.00066 41.3 25.5 215 232-463 788-1022(1187)
33 KOG0933 Structural maintenance 92.1 38 0.00082 42.0 24.7 120 312-441 813-932 (1174)
34 KOG0933 Structural maintenance 92.0 39 0.00084 41.9 25.0 105 255-359 242-346 (1174)
35 PF15272 BBP1_C: Spindle pole 92.0 16 0.00034 37.3 18.2 133 251-405 13-149 (196)
36 KOG0250 DNA repair protein RAD 91.7 43 0.00094 41.7 28.6 66 253-318 224-303 (1074)
37 KOG0964 Structural maintenance 91.7 16 0.00035 44.8 20.1 70 406-478 301-370 (1200)
38 KOG0577 Serine/threonine prote 91.6 35 0.00077 40.5 23.0 167 240-427 465-653 (948)
39 PF09726 Macoilin: Transmembra 91.5 36 0.00077 40.8 22.8 30 320-349 497-526 (697)
40 KOG4674 Uncharacterized conser 91.1 63 0.0014 42.5 26.4 164 256-423 1242-1426(1822)
41 COG1382 GimC Prefoldin, chaper 91.1 2.7 5.8E-05 39.6 10.6 92 392-487 10-114 (119)
42 KOG0018 Structural maintenance 90.8 52 0.0011 41.0 24.7 115 215-340 629-754 (1141)
43 PF09726 Macoilin: Transmembra 90.3 22 0.00048 42.4 19.7 27 313-339 445-471 (697)
44 KOG1937 Uncharacterized conser 89.7 23 0.00049 40.3 17.9 86 396-487 308-394 (521)
45 PHA02562 46 endonuclease subun 89.5 42 0.00091 38.0 26.0 26 248-273 172-197 (562)
46 PF12128 DUF3584: Protein of u 89.4 71 0.0015 40.5 31.5 37 388-424 743-790 (1201)
47 PRK02224 chromosome segregatio 89.3 58 0.0013 39.2 29.2 14 391-404 345-358 (880)
48 PF05701 WEMBL: Weak chloropla 88.7 51 0.0011 37.9 30.5 95 254-349 169-263 (522)
49 KOG0977 Nuclear envelope prote 88.6 55 0.0012 38.2 20.6 178 284-480 203-386 (546)
50 PRK09039 hypothetical protein; 88.5 42 0.0009 36.7 20.8 27 470-496 189-216 (343)
51 PF15066 CAGE1: Cancer-associa 88.1 31 0.00067 39.4 17.6 73 339-421 446-519 (527)
52 PRK03918 chromosome segregatio 87.6 71 0.0015 38.3 28.1 6 510-515 441-446 (880)
53 PF05605 zf-Di19: Drought indu 87.5 0.34 7.5E-06 38.7 1.7 25 38-66 1-25 (54)
54 TIGR00606 rad50 rad50. This fa 86.8 1E+02 0.0022 39.3 28.1 49 432-480 573-621 (1311)
55 KOG0994 Extracellular matrix g 86.7 1E+02 0.0022 39.1 27.3 61 230-290 1479-1544(1758)
56 KOG0239 Kinesin (KAR3 subfamil 86.6 40 0.00086 40.2 18.5 202 256-496 113-319 (670)
57 PF05911 DUF869: Plant protein 86.5 86 0.0019 38.1 23.6 91 252-346 80-173 (769)
58 PRK04863 mukB cell division pr 84.9 1.4E+02 0.003 39.0 30.1 61 397-457 399-463 (1486)
59 PRK04778 septation ring format 84.5 87 0.0019 36.4 29.7 99 382-480 318-427 (569)
60 COG1340 Uncharacterized archae 83.2 73 0.0016 34.5 25.1 93 393-485 136-238 (294)
61 KOG0249 LAR-interacting protei 82.9 79 0.0017 38.1 18.2 115 219-339 62-181 (916)
62 PF13851 GAS: Growth-arrest sp 82.6 27 0.0006 35.3 13.1 90 254-350 83-172 (201)
63 KOG0804 Cytoplasmic Zn-finger 82.5 59 0.0013 37.1 16.5 24 221-244 278-301 (493)
64 KOG0963 Transcription factor/C 82.0 1.2E+02 0.0025 36.0 22.3 39 389-427 311-359 (629)
65 PF05701 WEMBL: Weak chloropla 81.7 1.1E+02 0.0023 35.4 27.1 37 323-359 283-319 (522)
66 KOG4674 Uncharacterized conser 81.1 2E+02 0.0044 38.2 27.2 208 231-469 1154-1379(1822)
67 KOG0946 ER-Golgi vesicle-tethe 80.9 1.5E+02 0.0032 36.4 23.1 47 231-277 631-677 (970)
68 KOG0971 Microtubule-associated 80.8 1.6E+02 0.0034 36.7 27.0 25 440-464 462-486 (1243)
69 KOG0995 Centromere-associated 80.6 1.3E+02 0.0027 35.5 27.4 182 71-283 64-254 (581)
70 KOG0994 Extracellular matrix g 79.4 1.9E+02 0.0042 36.9 23.9 51 305-355 1589-1642(1758)
71 PRK12704 phosphodiesterase; Pr 78.5 1.1E+02 0.0024 35.4 17.7 21 466-486 145-165 (520)
72 PTZ00121 MAEBL; Provisional 78.5 2.3E+02 0.0049 37.2 26.8 67 291-361 1572-1638(2084)
73 PF05667 DUF812: Protein of un 78.4 1.5E+02 0.0033 35.1 21.8 21 402-422 509-529 (594)
74 PF00076 RRM_1: RNA recognitio 78.1 6.2 0.00013 31.0 5.5 55 124-190 1-57 (70)
75 PF05010 TACC: Transforming ac 78.1 88 0.0019 32.2 27.0 84 255-338 7-93 (207)
76 PRK00409 recombination and DNA 77.9 56 0.0012 39.6 15.7 80 315-400 517-596 (782)
77 PF14259 RRM_6: RNA recognitio 77.4 4.6 9.9E-05 32.4 4.6 58 124-193 1-60 (70)
78 KOG1265 Phospholipase C [Lipid 77.3 1.5E+02 0.0033 36.7 18.3 28 24-51 792-824 (1189)
79 PF13863 DUF4200: Domain of un 77.2 58 0.0013 29.7 13.7 25 402-426 71-95 (126)
80 KOG0982 Centrosomal protein Nu 77.2 1.4E+02 0.003 34.1 21.6 152 261-415 219-394 (502)
81 COG5185 HEC1 Protein involved 77.0 1.5E+02 0.0032 34.3 22.3 213 244-480 251-492 (622)
82 smart00030 CLb CLUSTERIN Beta 76.9 13 0.00029 37.9 8.6 55 356-410 18-79 (206)
83 TIGR01069 mutS2 MutS2 family p 76.8 60 0.0013 39.3 15.5 32 317-348 514-545 (771)
84 PF15070 GOLGA2L5: Putative go 75.5 1.8E+02 0.0039 34.5 23.9 47 410-456 179-229 (617)
85 KOG0163 Myosin class VI heavy 74.7 2.1E+02 0.0046 35.0 18.5 27 309-335 891-917 (1259)
86 PHA02562 46 endonuclease subun 74.4 1.6E+02 0.0035 33.4 27.5 35 388-422 313-347 (562)
87 KOG0979 Structural maintenance 73.6 2.5E+02 0.0054 35.3 26.9 91 178-293 119-210 (1072)
88 KOG2412 Nuclear-export-signal 73.1 1.4E+02 0.0031 34.9 16.2 50 315-364 198-247 (591)
89 KOG0971 Microtubule-associated 73.0 2.5E+02 0.0054 35.0 25.6 49 446-496 511-562 (1243)
90 KOG0976 Rho/Rac1-interacting s 72.4 2.5E+02 0.0053 34.7 26.2 142 284-425 279-430 (1265)
91 KOG0163 Myosin class VI heavy 72.4 2.2E+02 0.0048 34.9 17.8 11 214-224 822-832 (1259)
92 PLN03229 acetyl-coenzyme A car 71.5 2.4E+02 0.0053 34.3 20.0 57 395-451 649-710 (762)
93 KOG1853 LIS1-interacting prote 71.5 1.5E+02 0.0032 31.8 19.8 26 393-418 145-170 (333)
94 PF00261 Tropomyosin: Tropomyo 71.1 1.3E+02 0.0028 30.9 22.8 32 257-288 36-67 (237)
95 PF10234 Cluap1: Clusterin-ass 71.0 1.2E+02 0.0026 32.5 14.3 160 193-365 72-237 (267)
96 KOG0239 Kinesin (KAR3 subfamil 70.9 2E+02 0.0044 34.5 17.6 24 404-427 299-322 (670)
97 PF13894 zf-C2H2_4: C2H2-type 70.8 2.9 6.3E-05 26.6 1.6 21 40-63 1-21 (24)
98 PF05010 TACC: Transforming ac 70.8 1.3E+02 0.0029 30.9 18.1 29 336-364 144-172 (207)
99 PF15619 Lebercilin: Ciliary p 70.6 1.3E+02 0.0027 30.6 16.6 102 256-364 60-165 (194)
100 PF05911 DUF869: Plant protein 70.2 2.6E+02 0.0057 34.1 21.4 97 252-358 19-115 (769)
101 PRK00106 hypothetical protein; 69.8 2.3E+02 0.0049 33.2 21.8 54 366-419 161-218 (535)
102 smart00787 Spc7 Spc7 kinetocho 69.5 1.7E+02 0.0038 31.7 18.9 22 406-427 247-268 (312)
103 PRK01156 chromosome segregatio 69.1 2.7E+02 0.0059 33.8 28.5 16 136-151 102-117 (895)
104 KOG1029 Endocytic adaptor prot 68.9 2.9E+02 0.0062 34.0 27.2 19 434-452 547-565 (1118)
105 PF06705 SF-assemblin: SF-asse 68.9 1.5E+02 0.0032 30.7 22.0 152 278-445 85-238 (247)
106 KOG4572 Predicted DNA-binding 68.4 3E+02 0.0065 34.1 25.7 92 263-354 921-1035(1424)
107 KOG0018 Structural maintenance 67.5 3.4E+02 0.0074 34.4 23.0 73 407-482 404-476 (1141)
108 PRK12705 hypothetical protein; 66.3 2.6E+02 0.0056 32.6 21.1 69 329-397 92-166 (508)
109 PRK04778 septation ring format 66.3 2.6E+02 0.0056 32.6 27.5 79 407-487 450-533 (569)
110 PRK12704 phosphodiesterase; Pr 66.3 2.6E+02 0.0056 32.5 21.9 54 366-419 146-203 (520)
111 PF05262 Borrelia_P83: Borreli 66.2 2.6E+02 0.0056 32.5 16.7 17 500-516 387-403 (489)
112 smart00362 RRM_2 RNA recogniti 66.0 13 0.00029 28.2 4.7 47 124-181 2-49 (72)
113 PF05622 HOOK: HOOK protein; 65.7 2 4.3E-05 50.7 0.0 60 398-459 540-599 (713)
114 PF05483 SCP-1: Synaptonemal c 65.6 3.1E+02 0.0067 33.2 26.0 87 278-364 485-584 (786)
115 PF00261 Tropomyosin: Tropomyo 65.3 1.7E+02 0.0037 30.1 22.9 69 410-478 146-218 (237)
116 PF15066 CAGE1: Cancer-associa 65.2 1.3E+02 0.0029 34.6 13.7 111 254-364 387-521 (527)
117 PF04012 PspA_IM30: PspA/IM30 64.9 1.6E+02 0.0034 29.6 23.1 53 294-346 24-76 (221)
118 COG0419 SbcC ATPase involved i 64.5 3.4E+02 0.0075 33.3 29.8 31 397-427 680-711 (908)
119 PF10186 Atg14: UV radiation r 63.6 78 0.0017 32.5 11.2 19 469-487 138-156 (302)
120 COG1579 Zn-ribbon protein, pos 63.0 2.1E+02 0.0045 30.3 21.1 67 350-418 86-155 (239)
121 PF06637 PV-1: PV-1 protein (P 63.0 2.7E+02 0.0058 31.5 16.2 106 254-359 282-387 (442)
122 KOG0612 Rho-associated, coiled 63.0 4.3E+02 0.0094 34.0 25.0 57 406-462 596-656 (1317)
123 PTZ00464 SNF-7-like protein; P 62.8 1.9E+02 0.0041 29.8 15.4 67 397-463 77-148 (211)
124 PF08702 Fib_alpha: Fibrinogen 62.5 1.1E+02 0.0024 29.7 11.1 108 231-344 13-123 (146)
125 PF15254 CCDC14: Coiled-coil d 61.4 3.5E+02 0.0075 33.2 16.7 93 375-485 456-549 (861)
126 PF12325 TMF_TATA_bd: TATA ele 61.3 1.3E+02 0.0028 28.5 11.0 45 408-463 71-116 (120)
127 PF00096 zf-C2H2: Zinc finger, 61.2 5 0.00011 26.1 1.3 20 40-62 1-20 (23)
128 KOG0804 Cytoplasmic Zn-finger 60.0 3.2E+02 0.007 31.5 15.7 20 328-347 347-366 (493)
129 TIGR03319 YmdA_YtgF conserved 59.8 3.3E+02 0.0072 31.6 22.4 55 366-420 140-198 (514)
130 PRK00409 recombination and DNA 59.5 2.2E+02 0.0049 34.6 15.4 62 247-308 510-571 (782)
131 cd07647 F-BAR_PSTPIP The F-BAR 58.8 2.2E+02 0.0048 29.2 19.0 120 301-423 93-218 (239)
132 PF10473 CENP-F_leu_zip: Leuci 57.7 1.9E+02 0.0041 28.1 18.1 126 279-405 4-136 (140)
133 smart00400 ZnF_CHCC zinc finge 57.4 18 0.00039 28.9 4.1 37 26-66 10-46 (55)
134 PF15236 CCDC66: Coiled-coil d 57.3 2.1E+02 0.0045 28.5 15.8 95 218-312 15-114 (157)
135 PF10168 Nup88: Nuclear pore c 57.2 4.3E+02 0.0093 32.1 18.4 11 121-131 297-307 (717)
136 PF04880 NUDE_C: NUDE protein, 56.2 16 0.00034 36.4 4.3 27 393-419 12-38 (166)
137 PF13912 zf-C2H2_6: C2H2-type 54.8 7 0.00015 26.4 1.2 22 39-63 1-22 (27)
138 TIGR01649 hnRNP-L_PTB hnRNP-L/ 53.8 26 0.00056 39.5 6.1 72 118-199 389-463 (481)
139 KOG4403 Cell surface glycoprot 53.7 4E+02 0.0087 30.7 17.0 47 417-463 380-431 (575)
140 PF05557 MAD: Mitotic checkpoi 53.7 4.3 9.4E-05 48.0 0.0 92 388-479 288-393 (722)
141 KOG0962 DNA repair protein RAD 53.5 6.3E+02 0.014 32.9 25.0 66 354-426 834-899 (1294)
142 PHA02540 61 DNA primase; Provi 53.5 3.1 6.8E-05 45.4 -1.1 126 39-190 27-161 (337)
143 COG2433 Uncharacterized conser 52.4 1.6E+02 0.0035 35.0 12.0 37 388-427 474-510 (652)
144 PF09738 DUF2051: Double stran 52.1 3.5E+02 0.0075 29.5 15.9 25 270-294 83-107 (302)
145 KOG1103 Predicted coiled-coil 51.7 3.9E+02 0.0085 30.0 20.5 12 321-332 114-125 (561)
146 KOG1103 Predicted coiled-coil 51.6 3.9E+02 0.0085 30.0 19.1 101 320-423 145-263 (561)
147 PF07989 Microtub_assoc: Micro 51.1 37 0.0008 29.5 5.3 43 307-349 29-71 (75)
148 KOG0980 Actin-binding protein 50.9 5.9E+02 0.013 31.8 29.2 63 470-540 587-651 (980)
149 PF06730 FAM92: FAM92 protein; 50.5 3.2E+02 0.0069 28.6 16.1 83 340-427 126-212 (219)
150 PF09727 CortBP2: Cortactin-bi 50.1 3E+02 0.0066 28.2 14.3 47 313-359 133-179 (192)
151 PF01093 Clusterin: Clusterin; 49.8 47 0.001 37.8 7.2 55 356-410 12-73 (436)
152 PF12718 Tropomyosin_1: Tropom 49.7 2.5E+02 0.0054 27.1 15.4 26 383-408 68-93 (143)
153 PRK09039 hypothetical protein; 49.5 3.9E+02 0.0084 29.3 18.5 44 259-302 62-105 (343)
154 KOG4643 Uncharacterized coiled 49.0 6.7E+02 0.015 31.9 28.0 68 346-415 447-519 (1195)
155 PF09731 Mitofilin: Mitochondr 48.5 4.9E+02 0.011 30.1 24.2 25 389-413 379-403 (582)
156 PF14073 Cep57_CLD: Centrosome 48.3 3.1E+02 0.0067 27.8 16.3 20 327-346 59-78 (178)
157 PF10186 Atg14: UV radiation r 47.3 3.3E+02 0.0072 27.9 18.0 31 523-557 204-234 (302)
158 COG1579 Zn-ribbon protein, pos 47.1 3.7E+02 0.0081 28.4 19.9 21 406-426 118-138 (239)
159 PLN03120 nucleic acid binding 47.1 34 0.00073 36.4 5.3 58 123-193 6-64 (260)
160 PF13851 GAS: Growth-arrest sp 46.8 3.3E+02 0.0071 27.7 24.0 157 270-454 8-168 (201)
161 PF11932 DUF3450: Protein of u 46.8 3.5E+02 0.0075 28.0 13.4 54 406-462 50-103 (251)
162 KOG4302 Microtubule-associated 46.7 6E+02 0.013 30.7 17.5 158 266-451 13-175 (660)
163 TIGR01069 mutS2 MutS2 family p 46.2 3.8E+02 0.0081 32.7 14.4 7 190-196 426-432 (771)
164 PF04094 DUF390: Protein of un 46.0 6.5E+02 0.014 30.8 17.2 152 241-394 412-574 (828)
165 TIGR01661 ELAV_HUD_SF ELAV/HuD 46.0 33 0.00072 36.1 5.2 52 123-185 271-325 (352)
166 PHA00616 hypothetical protein 45.9 7.6 0.00016 30.7 0.3 23 39-64 1-23 (44)
167 KOG4593 Mitotic checkpoint pro 45.5 6.4E+02 0.014 30.6 26.6 43 314-356 147-189 (716)
168 PF05483 SCP-1: Synaptonemal c 45.2 6.5E+02 0.014 30.7 29.2 111 366-482 363-482 (786)
169 PF05622 HOOK: HOOK protein; 45.0 7.1 0.00015 46.2 0.0 89 336-424 302-403 (713)
170 PF04111 APG6: Autophagy prote 44.8 2.1E+02 0.0045 31.1 10.9 60 491-559 151-211 (314)
171 PF12718 Tropomyosin_1: Tropom 44.8 3E+02 0.0064 26.6 13.1 19 409-427 46-64 (143)
172 PF07106 TBPIP: Tat binding pr 43.7 1.1E+02 0.0023 29.8 7.9 95 389-493 73-167 (169)
173 PF10168 Nup88: Nuclear pore c 43.6 6.8E+02 0.015 30.4 15.9 69 271-339 551-625 (717)
174 PF03962 Mnd1: Mnd1 family; I 43.4 1.8E+02 0.004 29.2 9.6 58 407-464 78-138 (188)
175 KOG4807 F-actin binding protei 43.3 5.5E+02 0.012 29.3 19.4 77 388-478 463-540 (593)
176 PF00038 Filament: Intermediat 43.2 4.2E+02 0.009 27.8 24.8 209 257-480 96-306 (312)
177 KOG0247 Kinesin-like protein [ 42.7 6.8E+02 0.015 30.7 15.2 52 406-457 593-647 (809)
178 KOG3433 Protein involved in me 42.4 3.4E+02 0.0073 27.9 11.1 71 366-444 89-159 (203)
179 PF00769 ERM: Ezrin/radixin/mo 42.1 4.3E+02 0.0093 27.7 14.7 67 298-364 14-86 (246)
180 PF07926 TPR_MLP1_2: TPR/MLP1/ 42.0 3E+02 0.0065 25.8 14.5 67 394-463 58-125 (132)
181 TIGR01005 eps_transp_fam exopo 41.8 6.8E+02 0.015 29.9 16.4 58 257-314 288-345 (754)
182 PRK10884 SH3 domain-containing 41.8 3.7E+02 0.008 27.6 11.6 24 315-338 133-156 (206)
183 PRK10884 SH3 domain-containing 41.4 3.2E+02 0.007 28.0 11.1 15 204-219 66-80 (206)
184 PLN03121 nucleic acid binding 41.3 45 0.00097 35.2 5.1 62 121-194 5-66 (243)
185 KOG4212 RNA-binding protein hn 41.3 50 0.0011 37.6 5.7 66 124-199 47-113 (608)
186 PF15070 GOLGA2L5: Putative go 41.2 7E+02 0.015 29.8 24.8 35 248-282 27-61 (617)
187 COG1340 Uncharacterized archae 41.1 5.1E+02 0.011 28.3 27.1 100 383-485 167-275 (294)
188 PF01576 Myosin_tail_1: Myosin 40.5 9.2 0.0002 46.5 0.0 26 254-279 128-153 (859)
189 PF05667 DUF812: Protein of un 40.0 7.1E+02 0.015 29.6 27.9 61 420-480 493-556 (594)
190 KOG0982 Centrosomal protein Nu 39.7 6.5E+02 0.014 29.0 17.9 152 327-481 217-384 (502)
191 PF11068 YlqD: YlqD protein; 39.4 1.2E+02 0.0025 29.2 7.1 88 324-427 19-106 (131)
192 KOG4593 Mitotic checkpoint pro 39.3 7.9E+02 0.017 29.9 22.1 50 381-430 275-324 (716)
193 PRK10803 tol-pal system protei 39.2 69 0.0015 33.7 6.2 44 397-453 56-99 (263)
194 KOG0244 Kinesin-like protein [ 39.2 8.8E+02 0.019 30.4 17.2 80 401-480 575-662 (913)
195 cd00350 rubredoxin_like Rubred 39.0 12 0.00027 27.2 0.4 17 36-52 14-30 (33)
196 cd07651 F-BAR_PombeCdc15_like 38.7 4.4E+02 0.0096 26.8 20.3 106 311-422 104-214 (236)
197 PF08702 Fib_alpha: Fibrinogen 38.4 3.8E+02 0.0083 26.0 15.0 66 254-319 54-120 (146)
198 PF11559 ADIP: Afadin- and alp 38.2 3.6E+02 0.0077 25.6 14.0 40 319-358 71-110 (151)
199 PF13465 zf-H2C2_2: Zinc-finge 37.7 18 0.00038 24.9 1.0 14 35-48 10-23 (26)
200 KOG4438 Centromere-associated 36.1 7.2E+02 0.016 28.6 20.8 45 232-276 88-133 (446)
201 PF04810 zf-Sec23_Sec24: Sec23 36.0 23 0.0005 26.9 1.6 16 32-47 17-32 (40)
202 KOG2264 Exostosin EXT1L [Signa 35.8 1.5E+02 0.0032 35.2 8.3 47 378-427 76-122 (907)
203 PF04012 PspA_IM30: PspA/IM30 35.5 4.7E+02 0.01 26.2 20.6 61 255-315 14-77 (221)
204 PF08826 DMPK_coil: DMPK coile 35.4 1.6E+02 0.0034 24.9 6.5 53 399-455 5-58 (61)
205 PF14932 HAUS-augmin3: HAUS au 35.4 3.5E+02 0.0075 28.3 10.6 19 491-510 160-178 (256)
206 KOG3647 Predicted coiled-coil 35.4 6.2E+02 0.013 27.6 14.8 71 294-364 106-179 (338)
207 COG0576 GrpE Molecular chapero 35.0 2.8E+02 0.0061 28.1 9.5 55 452-512 93-156 (193)
208 PF04880 NUDE_C: NUDE protein, 34.8 48 0.001 33.0 4.0 11 273-283 2-12 (166)
209 PRK10698 phage shock protein P 34.6 5.3E+02 0.011 26.6 23.0 52 293-344 24-75 (222)
210 PRK00398 rpoP DNA-directed RNA 34.4 23 0.0005 27.4 1.3 11 38-48 20-30 (46)
211 KOG1655 Protein involved in va 33.6 5.7E+02 0.012 26.6 13.9 31 335-365 22-52 (218)
212 PF02841 GBP_C: Guanylate-bind 33.6 6.1E+02 0.013 26.9 14.4 109 285-401 186-297 (297)
213 PRK01156 chromosome segregatio 33.5 9.7E+02 0.021 29.2 29.9 10 331-340 262-271 (895)
214 PF00301 Rubredoxin: Rubredoxi 33.5 18 0.0004 28.8 0.7 14 38-51 33-46 (47)
215 PF14197 Cep57_CLD_2: Centroso 33.2 3.1E+02 0.0068 23.5 9.3 67 262-343 3-69 (69)
216 CHL00077 rps18 ribosomal prote 33.1 69 0.0015 28.8 4.2 49 40-89 18-69 (86)
217 PRK14143 heat shock protein Gr 33.0 6.1E+02 0.013 26.7 11.8 22 474-501 152-173 (238)
218 PF15035 Rootletin: Ciliary ro 33.0 5.2E+02 0.011 26.0 14.5 98 247-345 6-119 (182)
219 PF10481 CENP-F_N: Cenp-F N-te 32.8 6.8E+02 0.015 27.3 14.0 116 318-457 15-130 (307)
220 TIGR03655 anti_R_Lar restricti 32.5 20 0.00043 28.7 0.7 11 40-50 2-12 (53)
221 PRK09343 prefoldin subunit bet 32.4 4.2E+02 0.0091 24.7 9.9 79 405-487 28-115 (121)
222 PF14817 HAUS5: HAUS augmin-li 31.8 4.9E+02 0.011 31.2 12.1 82 245-326 74-161 (632)
223 PF01576 Myosin_tail_1: Myosin 31.7 16 0.00034 44.6 0.0 82 284-365 104-192 (859)
224 PF03357 Snf7: Snf7; InterPro 31.6 4.4E+02 0.0096 24.7 10.5 25 403-427 63-87 (171)
225 TIGR02894 DNA_bind_RsfA transc 31.4 5.5E+02 0.012 25.7 11.2 40 434-480 116-155 (161)
226 KOG2606 OTU (ovarian tumor)-li 31.2 1.9E+02 0.0042 31.4 7.9 31 387-417 44-74 (302)
227 COG3883 Uncharacterized protei 31.0 7E+02 0.015 26.8 19.0 54 258-311 53-113 (265)
228 KOG2996 Rho guanine nucleotide 30.8 1E+03 0.022 28.7 14.6 148 292-463 244-401 (865)
229 PF10058 DUF2296: Predicted in 30.5 26 0.00056 28.7 1.1 15 32-46 37-51 (54)
230 smart00531 TFIIE Transcription 30.5 26 0.00056 33.5 1.3 13 36-48 120-132 (147)
231 PLN03134 glycine-rich RNA-bind 30.5 87 0.0019 29.9 4.8 56 123-190 36-94 (144)
232 PF13913 zf-C2HC_2: zinc-finge 30.3 33 0.00072 23.6 1.4 20 39-62 2-21 (25)
233 PF14988 DUF4515: Domain of un 30.1 6.2E+02 0.013 25.9 23.1 54 258-311 23-76 (206)
234 PF05129 Elf1: Transcription e 29.9 21 0.00046 31.3 0.6 13 35-47 18-30 (81)
235 PRK13182 racA polar chromosome 29.3 2.1E+02 0.0046 28.6 7.5 37 370-406 107-143 (175)
236 KOG0240 Kinesin (SMY1 subfamil 29.1 1.1E+03 0.023 28.3 16.5 151 235-423 374-528 (607)
237 PF07464 ApoLp-III: Apolipopho 29.0 1.3E+02 0.0029 29.6 5.9 92 242-333 23-118 (155)
238 PTZ00332 paraflagellar rod pro 28.8 1E+03 0.022 28.1 21.4 130 290-448 265-417 (589)
239 KOG0995 Centromere-associated 28.7 1.1E+03 0.023 28.2 25.5 35 248-282 306-340 (581)
240 PF13870 DUF4201: Domain of un 28.7 5.6E+02 0.012 25.0 15.8 48 299-346 59-109 (177)
241 KOG0972 Huntingtin interacting 28.7 8.3E+02 0.018 27.0 14.8 124 299-448 226-354 (384)
242 PF12171 zf-C2H2_jaz: Zinc-fin 28.6 34 0.00074 23.4 1.3 23 39-64 1-23 (27)
243 PLN03188 kinesin-12 family pro 28.5 1.2E+03 0.026 30.5 14.9 48 256-303 1078-1125(1320)
244 PF14354 Lar_restr_allev: Rest 28.3 25 0.00055 28.3 0.7 11 39-50 3-13 (61)
245 PF11214 Med2: Mediator comple 27.6 4.3E+02 0.0093 24.7 8.5 40 255-294 43-82 (105)
246 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.6 5.2E+02 0.011 24.2 17.0 69 295-364 41-109 (132)
247 PF08614 ATG16: Autophagy prot 27.5 3.3E+02 0.0071 27.2 8.5 29 435-463 150-178 (194)
248 cd00730 rubredoxin Rubredoxin; 27.2 20 0.00043 28.9 -0.1 15 38-52 33-47 (50)
249 COG5533 UBP5 Ubiquitin C-termi 27.1 39 0.00085 37.1 2.0 28 15-48 266-293 (415)
250 PF07889 DUF1664: Protein of u 27.1 5.7E+02 0.012 24.5 13.4 95 243-338 29-123 (126)
251 PF06785 UPF0242: Uncharacteri 27.0 8.7E+02 0.019 27.3 11.9 108 330-475 73-187 (401)
252 TIGR01661 ELAV_HUD_SF ELAV/HuD 26.8 1E+02 0.0022 32.5 5.0 48 123-181 5-55 (352)
253 COG0466 Lon ATP-dependent Lon 26.7 8.8E+02 0.019 29.8 12.9 131 397-580 207-343 (782)
254 COG1842 PspA Phage shock prote 26.2 7.6E+02 0.016 25.7 22.4 37 267-303 27-63 (225)
255 PF03670 UPF0184: Uncharacteri 26.0 2.6E+02 0.0057 25.1 6.5 50 257-306 26-75 (83)
256 PF04508 Pox_A_type_inc: Viral 25.8 57 0.0012 22.7 1.9 18 389-406 2-19 (23)
257 smart00355 ZnF_C2H2 zinc finge 25.8 44 0.00096 21.0 1.4 21 40-63 1-21 (26)
258 KOG1150 Predicted molecular ch 25.8 4.8E+02 0.01 27.3 9.2 83 279-365 119-208 (250)
259 COG0419 SbcC ATPase involved i 25.8 1.3E+03 0.029 28.4 26.5 19 135-153 107-125 (908)
260 KOG0127 Nucleolar protein fibr 25.7 82 0.0018 36.9 4.2 51 121-180 117-167 (678)
261 PRK05431 seryl-tRNA synthetase 25.6 5E+02 0.011 29.2 10.4 52 432-501 69-129 (425)
262 smart00360 RRM RNA recognition 25.5 97 0.0021 23.1 3.5 45 142-189 8-55 (71)
263 PF13909 zf-H2C2_5: C2H2-type 25.3 36 0.00077 22.5 0.9 19 40-62 1-19 (24)
264 KOG1962 B-cell receptor-associ 25.2 4.2E+02 0.009 27.7 8.9 47 429-475 151-197 (216)
265 KOG0946 ER-Golgi vesicle-tethe 25.1 1.4E+03 0.031 28.5 21.2 44 433-476 796-839 (970)
266 PF10498 IFT57: Intra-flagella 25.1 9.8E+02 0.021 26.6 16.7 41 43-91 16-57 (359)
267 PF11559 ADIP: Afadin- and alp 25.0 6E+02 0.013 24.1 16.4 11 216-226 14-24 (151)
268 PF04780 DUF629: Protein of un 24.8 40 0.00086 38.6 1.6 49 13-64 24-79 (466)
269 KOG2903 Predicted glutathione 24.8 35 0.00076 36.6 1.1 23 582-604 110-132 (319)
270 COG0172 SerS Seryl-tRNA synthe 24.5 5.6E+02 0.012 29.4 10.4 53 432-502 71-132 (429)
271 KOG4572 Predicted DNA-binding 24.4 1.5E+03 0.032 28.5 23.1 29 399-427 1017-1046(1424)
272 TIGR00165 S18 ribosomal protei 24.4 1.3E+02 0.0027 26.1 4.2 49 40-88 6-58 (70)
273 KOG1994 Predicted RNA binding 24.3 39 0.00085 35.4 1.3 30 33-65 233-262 (268)
274 COG0724 RNA-binding proteins ( 24.1 1.4E+02 0.003 28.4 5.0 61 121-192 115-178 (306)
275 TIGR00570 cdk7 CDK-activating 23.6 1E+03 0.022 26.2 11.9 32 220-268 84-115 (309)
276 PF15023 DUF4523: Protein of u 23.5 1.1E+02 0.0023 30.4 4.0 63 121-192 84-146 (166)
277 PF04059 RRM_2: RNA recognitio 23.2 2.6E+02 0.0056 25.5 6.2 59 123-196 3-66 (97)
278 PF10267 Tmemb_cc2: Predicted 22.9 1.1E+03 0.025 26.6 14.5 22 391-413 308-329 (395)
279 PF12344 UvrB: Ultra-violet re 22.9 1.1E+02 0.0023 24.5 3.2 24 281-304 4-30 (44)
280 PRK13401 30S ribosomal protein 22.9 1.3E+02 0.0028 26.9 4.1 50 40-89 14-67 (82)
281 COG4026 Uncharacterized protei 22.8 6.6E+02 0.014 26.7 9.7 63 383-445 144-207 (290)
282 COG1842 PspA Phage shock prote 22.8 8.8E+02 0.019 25.3 24.3 50 291-340 22-71 (225)
283 PRK04863 mukB cell division pr 22.7 1.9E+03 0.041 29.2 29.2 28 392-419 517-544 (1486)
284 KOG0533 RRM motif-containing p 22.7 1.4E+02 0.003 31.5 5.0 66 123-200 85-152 (243)
285 KOG0980 Actin-binding protein 22.5 1.6E+03 0.035 28.3 28.4 39 436-485 526-564 (980)
286 PF05278 PEARLI-4: Arabidopsis 22.4 5.5E+02 0.012 27.7 9.3 14 230-243 101-114 (269)
287 COG4985 ABC-type phosphate tra 22.4 8.5E+02 0.018 26.1 10.4 115 113-237 42-168 (289)
288 PF08581 Tup_N: Tup N-terminal 22.4 5.5E+02 0.012 22.7 10.9 30 378-407 47-76 (79)
289 PF06428 Sec2p: GDP/GTP exchan 21.9 5.2E+02 0.011 23.8 7.9 42 382-426 38-79 (100)
290 PRK10698 phage shock protein P 21.9 8.8E+02 0.019 24.9 16.4 46 256-301 16-61 (222)
291 PRK00846 hypothetical protein; 21.8 3.2E+02 0.007 24.1 6.3 53 431-487 8-60 (77)
292 PF11544 Spc42p: Spindle pole 21.7 1.9E+02 0.0042 25.5 4.8 32 434-465 3-34 (76)
293 KOG0962 DNA repair protein RAD 21.7 1.9E+03 0.041 28.8 27.0 38 291-328 912-952 (1294)
294 PRK00391 rpsR 30S ribosomal pr 21.7 1.5E+02 0.0032 26.3 4.2 51 38-88 13-67 (79)
295 PF09728 Taxilin: Myosin-like 21.6 1E+03 0.023 25.7 26.4 96 294-399 105-203 (309)
296 PF11944 DUF3461: Protein of u 21.5 3E+02 0.0066 26.4 6.4 53 281-341 70-122 (125)
297 TIGR00219 mreC rod shape-deter 21.5 1.8E+02 0.0038 31.1 5.6 40 387-426 72-112 (283)
298 smart00451 ZnF_U1 U1-like zinc 21.5 74 0.0016 22.4 2.0 24 38-64 2-25 (35)
299 PF11577 NEMO: NF-kappa-B esse 21.4 5.4E+02 0.012 22.2 8.4 47 313-359 5-51 (68)
300 TIGR03185 DNA_S_dndD DNA sulfu 21.3 1.4E+03 0.03 27.0 26.2 19 149-169 137-155 (650)
301 PF01807 zf-CHC2: CHC2 zinc fi 21.3 75 0.0016 28.4 2.4 33 29-65 44-76 (97)
302 PF09787 Golgin_A5: Golgin sub 21.2 1.3E+03 0.028 26.6 25.6 17 573-589 468-484 (511)
303 PF12874 zf-met: Zinc-finger o 21.2 62 0.0013 21.3 1.4 22 40-64 1-22 (25)
304 PLN02678 seryl-tRNA synthetase 21.0 6.2E+02 0.013 29.0 10.0 52 431-500 73-133 (448)
305 smart00787 Spc7 Spc7 kinetocho 20.8 1.1E+03 0.024 25.7 22.5 39 435-480 224-262 (312)
306 PF15358 TSKS: Testis-specific 20.5 5.9E+02 0.013 29.3 9.3 58 240-297 108-165 (558)
307 PF03804 DUF325: Viral domain 20.4 54 0.0012 28.1 1.2 24 489-512 32-55 (71)
308 KOG2129 Uncharacterized conser 20.2 1.4E+03 0.03 26.5 19.5 203 259-466 45-319 (552)
No 1
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT. The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
Probab=100.00 E-value=2.5e-64 Score=465.75 Aligned_cols=131 Identities=60% Similarity=1.085 Sum_probs=129.8
Q ss_pred eecCCCCChHHHHHHHhcCCCchhhHHHHHHHHHHHHhhcCCCCcceeEE-ecCCCCcccccccCcHHHHHHHHHhhHHH
Q 038527 496 KRMGEIDNRPFLAAAKAKFPAEEADEKGLELCSLWEEYLRDPNWHPFKIL-VDKEGNCKEIIDVEDQKLKSLKNEYGEQV 574 (630)
Q Consensus 496 KrmGeld~~~f~~ac~~k~~~~~~~~~a~~l~s~Wq~~l~dp~W~PFk~v-~~~~g~~keii~edD~kL~~Lk~e~Geev 574 (630)
||||+||.+||+.||++||++++|+++|++|||+||++|+||+||||||| ++ |+.++|||+||+||++||++||+||
T Consensus 1 KrMGeLd~kpF~~Ack~k~~~eeae~~A~~LcS~Wqe~ikdp~WhPFkvv~~~--g~~~evi~edDekL~~Lk~e~Geev 78 (132)
T PF03469_consen 1 KRMGELDEKPFLNACKRKYPEEEAEVKAAELCSLWQEEIKDPEWHPFKVVTVD--GKEKEVIDEDDEKLQELKEEWGEEV 78 (132)
T ss_pred CcccccChHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhhCCCccceEEeccC--CcccccccCchHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999 88 9999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCCCCcccccccccccccccchHHHHHHHHHHHHHhhhhc
Q 038527 575 HNAVALAQSEMNQYNPSGRYTIPELWNFKENRKATLKEGAIHLLNQWRVNRKRK 628 (630)
Q Consensus 575 ~~aV~~Al~E~neyN~sgry~v~elWN~ke~rkAtl~E~v~~~~~~~k~~k~kr 628 (630)
|+||++||+|||||||||||||||||||+|||||||+|||+||++||+++||||
T Consensus 79 y~aV~~Al~E~nEyN~sGry~v~eLWN~ke~RkAtl~E~v~~i~~q~k~~krkr 132 (132)
T PF03469_consen 79 YNAVTKALLEINEYNPSGRYPVPELWNFKEGRKATLKEVVQYILKQWKTLKRKR 132 (132)
T ss_pred HHHHHHHHHHHHHhccCCCCCCccCCccccccccCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999997
No 2
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=100.00 E-value=6.7e-46 Score=338.05 Aligned_cols=116 Identities=54% Similarity=1.070 Sum_probs=89.4
Q ss_pred CCceeeccceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHHHHHh
Q 038527 114 PDQLLVYPWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEK 193 (630)
Q Consensus 114 ~dd~iVWPwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~lek 193 (630)
+||+|||||||||+||+|+++++|+++|+|+++|+++|+. |+|.+|+||||++||+|+|||+|++||+||+||++||+
T Consensus 1 qdd~~VWPwmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~--f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 1 QDDLIVWPWMGIIVNIPTEKDDDGRWVGMSNEELLDKLAE--FNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp ---EEEES-EEEEE----EE-TTS-EE---SHHHHHHHHH-----SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEEcCccccCCCCceeccCHHHHHHHHHh--cCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHHH
Confidence 5899999999999999999778999999999999999999 99999999999999999999999999999999999999
Q ss_pred hhhhcCCChhhhhhhcCCCccceeeeeecCCCCCCChh
Q 038527 194 SFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKSLI 231 (630)
Q Consensus 194 ~Fe~~~~GKkdW~~~~~~~~~LYGWvAradDy~s~g~i 231 (630)
||+.++|||+||.++++++++||||||++|||+++|||
T Consensus 79 ~F~~~~~Gr~dW~~~~~~~~~lYGw~A~~dD~~~~~~i 116 (116)
T PF03468_consen 79 HFEAQGHGRKDWERRRGGGSQLYGWVARADDYNSPGPI 116 (116)
T ss_dssp HHHHTT-SHHHHT-SSS---S-EEEE-BHHHHHSSSHH
T ss_pred HHHHcCCCHHHHhhccCCCCceeeeeCchhhccCCCCC
Confidence 99999999999999988899999999999999999987
No 3
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=99.63 E-value=1e-16 Score=122.47 Aligned_cols=42 Identities=67% Similarity=1.096 Sum_probs=39.3
Q ss_pred ccCCCCCCccccchHHHHhhhhccCCCC-CcChHHHHhhHHHH
Q 038527 42 CPFCRGKKETDYLYKELLQHASDVGRSR-SRGAREKAQHLALE 83 (630)
Q Consensus 42 CP~C~~kkK~~y~~~~LLqHA~gvg~s~-~r~ak~ka~HlaLa 83 (630)
||||++++|++|.|++|||||+|||+|| .|+++++|+|||||
T Consensus 1 CP~C~~kkk~~Y~~~~LlqHA~gvg~~~~~r~~k~ka~HrALa 43 (43)
T PF03470_consen 1 CPFCPGKKKQDYKYRELLQHASGVGASSSRRSAKEKANHRALA 43 (43)
T ss_pred CCCCCCCCCcceehhHHHHHHHhhCcCcccchHHHHHhhhhhC
Confidence 9999999999999999999999999665 67899999999996
No 4
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.09 E-value=0.19 Score=57.50 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhh
Q 038527 391 EKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKH 426 (630)
Q Consensus 391 e~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh 426 (630)
+.+-..+.+++..+...+.++.++..|+.+|..+.-
T Consensus 262 ~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe 297 (546)
T PF07888_consen 262 QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQE 297 (546)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 344445566666666666667777777766665543
No 5
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.03 E-value=0.81 Score=52.57 Aligned_cols=45 Identities=22% Similarity=0.428 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhHHH---HHHHhhccH-HHHHHHHH
Q 038527 435 QEKMDAIIKEIKEKEGEMDVVEALNQSL---IVRERKSND-ELQEARKE 479 (630)
Q Consensus 435 ~~k~~~l~~~l~ek~~~l~~~e~~nq~L---~~ker~snd-Elq~ark~ 479 (630)
+.+|..|+.++..+++.|..--.-+|.| +.+++.+|- .|-++|.+
T Consensus 370 k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~re 418 (546)
T PF07888_consen 370 KDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRE 418 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 4568888888888777776666666666 346666663 34444443
No 6
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.63 E-value=0.98 Score=58.49 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=46.7
Q ss_pred ceeeeeecC------CCCCCChhhhhhhhCCCCcChhhHH-----Hhh--hhhhhhHHHHHHHHHHHHhhhHHHHHHHhh
Q 038527 215 LYGWIARDD------DYNSKSLIGDHLRKNGDLKTVSGKE-----AED--QRKTSTLVTNLTRTLEVKDMRYKEMEMKYL 281 (630)
Q Consensus 215 LYGWvArad------Dy~s~g~ig~~Lrk~gdLKTv~ei~-----~E~--~rk~~~lv~~L~n~I~~kn~~l~elE~k~~ 281 (630)
.=||+|+.+ +..+--+|.+.+|....||+-+=.- ... ..++...+.....+|......++.+|.+-+
T Consensus 783 ~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ 862 (1930)
T KOG0161|consen 783 IRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRK 862 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 346666543 3333346777788887777654321 110 113344444455555555555666666666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 038527 282 ETSTYLDLTMEQMDEMNKSRNEE 304 (630)
Q Consensus 282 e~~~sL~r~meEk~~l~~~yneE 304 (630)
+......++..++-.|......|
T Consensus 863 ele~~~~~~~~e~~~l~~~l~~e 885 (1930)
T KOG0161|consen 863 ELEEKLVKLLEEKNDLQEQLQAE 885 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666665554444433333
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.56 E-value=2.7 Score=51.06 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=12.9
Q ss_pred ChhhHHHHHHhCCCCCc
Q 038527 143 SGSKLRDEFRSKGFNPL 159 (630)
Q Consensus 143 s~~~L~~~~~~~GF~p~ 159 (630)
+...+.+.|...||.|.
T Consensus 118 ~~~~~~~~l~~~~~~~~ 134 (1164)
T TIGR02169 118 RLSEIHDFLAAAGIYPE 134 (1164)
T ss_pred cHHHHHHHHHHcCCCcC
Confidence 56778888888787774
No 8
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.48 E-value=0.98 Score=54.00 Aligned_cols=216 Identities=20% Similarity=0.295 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHhh---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 257 TLVTNLTRTLEVKDMRYKEMEMKYL---------ETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKAT 327 (630)
Q Consensus 257 ~lv~~L~n~I~~kn~~l~elE~k~~---------e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~ 327 (630)
.-+.+|..++..+.+.+..+..++. ....+|.....+++++....++....-.+-..+-+...=.++..++
T Consensus 399 ~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk 478 (775)
T PF10174_consen 399 KKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELK 478 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3366677777788888888877777 4456677777777777777665433322222333344444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHH--HHHh--HhhhHHHhhhhHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 038527 328 SQLEAQKMQLEEHEKQLQYREAKNETERKKLHSE--KIMN--ERATLEQKKADEKVWRLAQVHKE--EKEKLRRKIIELQ 401 (630)
Q Consensus 328 ~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E--~~kn--~lA~~EQ~kade~vlkL~e~hkr--EKe~~~~kil~LE 401 (630)
..+++.-.+|..+.-+|....-.. .+|..- ++.. .-+.++=.+..+.+-+|....++ ...++..+|..||
T Consensus 479 ~~~~~LQ~eLsEk~~~l~~~kee~----s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le 554 (775)
T PF10174_consen 479 AKLESLQKELSEKELQLEDAKEEA----SKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLE 554 (775)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhHH----HHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHH
Confidence 555555555555555554322111 111111 1111 11223333444555566555543 3345566777777
Q ss_pred hchhHHh----hhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHH--HhhccHHHHH
Q 038527 402 KGLDAKQ----ALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVR--ERKSNDELQE 475 (630)
Q Consensus 402 kqLd~kQ----~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~k--er~sndElq~ 475 (630)
++....- +-..||.+|.+-|.-+- .+-...-++|..|..+|++---.+......++++-+. +|++..+|.+
T Consensus 555 ~ev~~~~ee~~kaq~EVERLl~~L~~~E---~EK~~ke~ki~~LekeLek~~~~~~~~~~~~~~~k~~~~~~~~~ellee 631 (775)
T PF10174_consen 555 QEVTRYREESEKAQAEVERLLDILREAE---NEKNDKEKKIGELEKELEKAQMHLAKQQETVEATKIEENKRKRAELLEE 631 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHhccchhhhhhhhhhhhhHHHHHhhhHHHHH
Confidence 7653322 12456666655433222 2222344678888888877666666666666665554 8889999999
Q ss_pred HHHH
Q 038527 476 ARKE 479 (630)
Q Consensus 476 ark~ 479 (630)
|+++
T Consensus 632 a~Re 635 (775)
T PF10174_consen 632 ALRE 635 (775)
T ss_pred HHhh
Confidence 9883
No 9
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.46 E-value=1.2 Score=54.82 Aligned_cols=226 Identities=19% Similarity=0.220 Sum_probs=130.6
Q ss_pred hhhhhhhhCC-------------CCcChhhHHHhhh-hhhhhHHHHHHHHH---------HHHhhhHHHHHHHhhhhhHH
Q 038527 230 LIGDHLRKNG-------------DLKTVSGKEAEDQ-RKTSTLVTNLTRTL---------EVKDMRYKEMEMKYLETSTY 286 (630)
Q Consensus 230 ~ig~~Lrk~g-------------dLKTv~ei~~E~~-rk~~~lv~~L~n~I---------~~kn~~l~elE~k~~e~~~s 286 (630)
-|+.-|+..| .+-+|+.|---.. ..++=+|.||-..| +.-++.+.-|.+.|.+...+
T Consensus 210 ~V~~lLk~~gIDleHNRFLILQGEVE~IA~MKPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~ 289 (1293)
T KOG0996|consen 210 DVTKLLKSHGIDLEHNRFLILQGEVEQIAMMKPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENR 289 (1293)
T ss_pred HHHHHHHhcCCCCccceeeeehhhHHHHHhcCCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHH
Confidence 3566666666 3344444432222 23466888887765 77889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH-----------HHHHHHHHHHHHHH-----------HH
Q 038527 287 LDLTMEQMDEMNKSRNEEIRKMQQSA------HDHFQKIYLE-----------HEKATSQLEAQKMQ-----------LE 338 (630)
Q Consensus 287 L~r~meEk~~l~~~yneE~~kmQ~~a------~~~~~~i~~e-----------~ekl~~eLe~k~~e-----------L~ 338 (630)
+..+..|++.|-...++-|..|+... ..+.|.++.+ .++++..|.+-... .+
T Consensus 290 ~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e 369 (1293)
T KOG0996|consen 290 VKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNE 369 (1293)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHH
Confidence 99999999988888888877776542 2234444443 22222222221111 11
Q ss_pred HHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchh----HHhhhHHhH
Q 038527 339 EHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLD----AKQALELEI 414 (630)
Q Consensus 339 ~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd----~kQ~LELEi 414 (630)
...+.+.++++...+.+.-+..+.+.-..+...-+.+-.++..=+++-+.+.|++..++-.+|+-+. ..|++..||
T Consensus 370 ~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei 449 (1293)
T KOG0996|consen 370 AVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEI 449 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHH
Confidence 2222222222222222222222222222222222333344555555556677777777777777664 578999999
Q ss_pred HHhhhhhHHHhhc-ccccHHHHHHHHHHHHHHHHHHhhhHHH
Q 038527 415 EQKRGTIQVMKHM-REENVEVQEKMDAIIKEIKEKEGEMDVV 455 (630)
Q Consensus 415 ~qlkg~L~vmKh~-~~~d~~~~~k~~~l~~~l~ek~~~l~~~ 455 (630)
.+|.+.+++...- ++.-..++.+-..+.+++...+.+|...
T Consensus 450 ~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~ 491 (1293)
T KOG0996|consen 450 EQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPL 491 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 9999999988775 3333445555556666666666665443
No 10
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.45 E-value=2.6 Score=52.02 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=33.0
Q ss_pred HHHHHhhcCCCCcceeEE--ecCCCCcccccccCcHHHHHHHHHhhHHHHHHHHHHH-----HHhh--hhCCCCCccccc
Q 038527 528 SLWEEYLRDPNWHPFKIL--VDKEGNCKEIIDVEDQKLKSLKNEYGEQVHNAVALAQ-----SEMN--QYNPSGRYTIPE 598 (630)
Q Consensus 528 s~Wq~~l~dp~W~PFk~v--~~~~g~~keii~edD~kL~~Lk~e~Geev~~aV~~Al-----~E~n--eyN~sgry~v~e 598 (630)
+-|+..+.. .=.||-|- .| .|..+||+++. .-|.|+-.+| .+-+ -|-+.+||.|-.
T Consensus 678 ~~~~~~l~~-i~tpenvPRLfD-------Lv~~~d~~~r~-------aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvT 742 (1293)
T KOG0996|consen 678 KDHQKKLAP-ITTPENVPRLFD-------LVKCKDEKFRP-------AFYFALRDTLVADNLEQATRIAYGKDRRWRVVT 742 (1293)
T ss_pred hhhhhccCC-CCCCCCcchHhh-------hhccCCHHHHH-------HHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEE
Confidence 346666655 55666665 33 67888888763 4466655554 3333 355666565543
Q ss_pred c
Q 038527 599 L 599 (630)
Q Consensus 599 l 599 (630)
|
T Consensus 743 L 743 (1293)
T KOG0996|consen 743 L 743 (1293)
T ss_pred e
Confidence 3
No 11
>PRK11637 AmiB activator; Provisional
Probab=95.46 E-value=3.7 Score=45.46 Aligned_cols=47 Identities=26% Similarity=0.321 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHH
Q 038527 317 QKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKI 363 (630)
Q Consensus 317 ~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~ 363 (630)
..++++....+.+|+++..+|+....+|+.+.+.....+..|+.++.
T Consensus 169 ~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~ 215 (428)
T PRK11637 169 QETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARN 215 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666655555555555554433
No 12
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.28 E-value=12 Score=46.96 Aligned_cols=151 Identities=14% Similarity=0.210 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHH----------------hhhccCCccccceeec
Q 038527 435 QEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELIN----------------SLKEGRTRATIGVKRM 498 (630)
Q Consensus 435 ~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~----------------~l~~~~~~~~IgiKrm 498 (630)
...+..+.+.+++-.+.+..++.--+.+-.+.+...++++.++..+.. .... +....+| ++
T Consensus 445 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~Gv~G--~v 521 (1163)
T COG1196 445 NEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALES-GLPGVYG--PV 521 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhc-cCCCccc--hH
Confidence 344455555555555555555555555666666777777777764332 1111 0111122 34
Q ss_pred CCC--CChHHHHH----HHhcCCC--chhhHHHHHHHHHHHH-hhcCCCCcceeEE-ecCCCC----------ccccccc
Q 038527 499 GEI--DNRPFLAA----AKAKFPA--EEADEKGLELCSLWEE-YLRDPNWHPFKIL-VDKEGN----------CKEIIDV 558 (630)
Q Consensus 499 Gel--d~~~f~~a----c~~k~~~--~~~~~~a~~l~s~Wq~-~l~dp~W~PFk~v-~~~~g~----------~keii~e 558 (630)
|+| -...|..| |...... -+-+..|......|-. .+.-.+.-|-..| ...... .-.+|+-
T Consensus 522 ~~li~v~~~y~~Aie~alG~~l~~vVV~~~~~a~~~i~~lk~~~~gr~tflpl~~i~~~~~~~~~~~~g~~~~a~dli~~ 601 (1163)
T COG1196 522 AELIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKSDAAPGFLGLASDLIDF 601 (1163)
T ss_pred HHhcCcChHHHHHHHHHcccccCCeeeCChHHHHHHHHHHhhcCCCccccCchhhhccccccccccccchhHHHHHHhcC
Confidence 444 12245444 4333321 1334567777788865 5666666665555 221000 1146776
Q ss_pred CcHHHHHHHHHhhHH-HHHHHHHHHHHhhhh
Q 038527 559 EDQKLKSLKNEYGEQ-VHNAVALAQSEMNQY 588 (630)
Q Consensus 559 dD~kL~~Lk~e~Gee-v~~aV~~Al~E~ney 588 (630)
|+.--.-+..-+|.- |+.-+..|..-+..+
T Consensus 602 d~~~~~~~~~~l~~t~Iv~~l~~A~~l~~~~ 632 (1163)
T COG1196 602 DPKYEPAVRFVLGDTLVVDDLEQARRLARKL 632 (1163)
T ss_pred CHHHHHHHHHHhCCeEEecCHHHHHHHHHhc
Confidence 663333355555543 233345555555555
No 13
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.07 E-value=11 Score=45.42 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 320 YLEHEKATSQLEAQKMQLEEHEKQLQY 346 (630)
Q Consensus 320 ~~e~ekl~~eLe~k~~eL~~r~k~L~~ 346 (630)
..+++-+..+|+.+|++|+.|..-|..
T Consensus 258 d~~lq~sak~ieE~m~qlk~kns~L~~ 284 (1265)
T KOG0976|consen 258 DMDLQASAKEIEEKMRQLKAKNSVLGD 284 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666677777888888887776654
No 14
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.95 E-value=12 Score=45.49 Aligned_cols=11 Identities=0% Similarity=-0.142 Sum_probs=5.5
Q ss_pred eeccCCCCCCc
Q 038527 40 YRCPFCRGKKE 50 (630)
Q Consensus 40 ~~CP~C~~kkK 50 (630)
|.|.+=|++++
T Consensus 25 ~~~i~G~NGsG 35 (1164)
T TIGR02169 25 FTVISGPNGSG 35 (1164)
T ss_pred eEEEECCCCCC
Confidence 55554455544
No 15
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=94.91 E-value=12 Score=45.28 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHH
Q 038527 259 VTNLTRTLEVKDMRYKEMEMKYLETSTYLD 288 (630)
Q Consensus 259 v~~L~n~I~~kn~~l~elE~k~~e~~~sL~ 288 (630)
+..|...+...+..+..++..+......+.
T Consensus 679 ~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 708 (1179)
T TIGR02168 679 IEELEEKIEELEEKIAELEKALAELRKELE 708 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333333
No 16
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.85 E-value=15 Score=46.01 Aligned_cols=14 Identities=14% Similarity=0.387 Sum_probs=7.6
Q ss_pred hhHHHHHHhCCCCC
Q 038527 145 SKLRDEFRSKGFNP 158 (630)
Q Consensus 145 ~~L~~~~~~~GF~p 158 (630)
..+.+-|+..|+.+
T Consensus 122 ~dI~~l~~~~gi~~ 135 (1163)
T COG1196 122 KDIQDLLADSGIGK 135 (1163)
T ss_pred HHHHHHHHhcCCCC
Confidence 45556566644444
No 17
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.56 E-value=7.8 Score=47.38 Aligned_cols=69 Identities=33% Similarity=0.395 Sum_probs=39.1
Q ss_pred hhHHhHHHhhhhhHHHhhc-----------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHH
Q 038527 409 ALELEIEQKRGTIQVMKHM-----------REENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEAR 477 (630)
Q Consensus 409 ~LELEi~qlkg~L~vmKh~-----------~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ar 477 (630)
++--||.+|++-++=.+-- ..+..+....|.+|...+.+-...|+...+.+..|- .--|||+++|
T Consensus 394 wir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k----~~~del~~~R 469 (1200)
T KOG0964|consen 394 WIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELK----RELDELQDKR 469 (1200)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 5677777777666544331 011222334455555555555666665555554442 3348999999
Q ss_pred HHHH
Q 038527 478 KELI 481 (630)
Q Consensus 478 k~li 481 (630)
|+|-
T Consensus 470 k~lW 473 (1200)
T KOG0964|consen 470 KELW 473 (1200)
T ss_pred HHHH
Confidence 9853
No 18
>PRK11637 AmiB activator; Provisional
Probab=94.53 E-value=9.5 Score=42.28 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhh
Q 038527 379 VWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKH 426 (630)
Q Consensus 379 vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh 426 (630)
-..+++..+..+.++.....+|+.++...+.+.-+.++-+..|+..+.
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~ 215 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARN 215 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777778888888888888888877777777777776554
No 19
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.52 E-value=16 Score=44.89 Aligned_cols=76 Identities=28% Similarity=0.264 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHH-------hHhhhHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038527 333 QKMQLEEHEKQLQYREAKNETERKKLHSEKIM-------NERATLEQ---KKADEKVWRLAQVHKEEKEKLRRKIIELQK 402 (630)
Q Consensus 333 k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~k-------n~lA~~EQ---~kade~vlkL~e~hkrEKe~~~~kil~LEk 402 (630)
+-..|+.|-.++.++-++.+..-++|..|.++ +..+.-+| ..++..++.++..+..+-++++++|..|-+
T Consensus 416 k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~iknlnk 495 (1195)
T KOG4643|consen 416 KHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKNLNK 495 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444 45555555 345577888888888888888888888877
Q ss_pred chhHHh
Q 038527 403 GLDAKQ 408 (630)
Q Consensus 403 qLd~kQ 408 (630)
-|...+
T Consensus 496 ~L~~r~ 501 (1195)
T KOG4643|consen 496 SLNNRD 501 (1195)
T ss_pred HHHHHH
Confidence 776654
No 20
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.50 E-value=6.1 Score=39.91 Aligned_cols=136 Identities=24% Similarity=0.322 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcHHHHHhhHHHHHHhHhhhH
Q 038527 292 EQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREA-KNETERKKLHSEKIMNERATL 370 (630)
Q Consensus 292 eEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a-~~~~er~kl~~E~~kn~lA~~ 370 (630)
.+--++++.|++|++-++..-|..-.++-.-..++ .+.+..+..+....+.|.++.. .+=.+|.+|...
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl-k~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~k--------- 126 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKL-KDKDEELLKTKDELKHLKKLSEDKNLAEREELQRK--------- 126 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH---------
Confidence 44578889999999988888777655444333222 3344444445555555555433 222344444321
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHh
Q 038527 371 EQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEG 450 (630)
Q Consensus 371 EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~ 450 (630)
+.......++.-.+|..|+++| +|.-.-.+-.|.+. .+|..++..++..-..
T Consensus 127 ------------L~~~~~~l~~~~~ki~~Lek~l------eL~~k~~~rql~~e----------~kK~~~~~~~~~~l~~ 178 (194)
T PF15619_consen 127 ------------LSQLEQKLQEKEKKIQELEKQL------ELENKSFRRQLASE----------KKKHKEAQEEVKSLQE 178 (194)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHH------HHHhhHHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 1222233444455666666643 33333344444332 3344444444444444
Q ss_pred hhHHHHHhhHHHHHHHhh
Q 038527 451 EMDVVEALNQSLIVRERK 468 (630)
Q Consensus 451 ~l~~~e~~nq~L~~ker~ 468 (630)
+. +.|+|.|--|+|.
T Consensus 179 ei---~~L~~klkEKer~ 193 (194)
T PF15619_consen 179 EI---QRLNQKLKEKERE 193 (194)
T ss_pred HH---HHHHHHHHHHhhc
Confidence 43 5667777766663
No 21
>PRK02224 chromosome segregation protein; Provisional
Probab=94.47 E-value=15 Score=44.17 Aligned_cols=12 Identities=0% Similarity=-0.255 Sum_probs=5.7
Q ss_pred eeccCCCCCCcc
Q 038527 40 YRCPFCRGKKET 51 (630)
Q Consensus 40 ~~CP~C~~kkK~ 51 (630)
+.|.+=+++.+.
T Consensus 25 ~~~i~G~Ng~GK 36 (880)
T PRK02224 25 VTVIHGVNGSGK 36 (880)
T ss_pred eEEEECCCCCCH
Confidence 455544444443
No 22
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.44 E-value=19 Score=45.35 Aligned_cols=97 Identities=20% Similarity=0.341 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHhchhH-----HhhhHHhHHHhhhhhHHHhhc-c--cccHHHHHHHH-------HHHHHHHHH
Q 038527 384 QVHKEEKEKLRRKIIELQKGLDA-----KQALELEIEQKRGTIQVMKHM-R--EENVEVQEKMD-------AIIKEIKEK 448 (630)
Q Consensus 384 e~hkrEKe~~~~kil~LEkqLd~-----kQ~LELEi~qlkg~L~vmKh~-~--~~d~~~~~k~~-------~l~~~l~ek 448 (630)
+...+.++...+.+..|+.++.+ .+.+.-+-.+++..|..+++. . .-.++....++ ...+++...
T Consensus 409 e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~e~~~~~~~~~~~~~~a~~~~~~~ 488 (1201)
T PF12128_consen 409 EEKAERREQIEEEYQALEQELRQQSQEQLEELQEQREQLKSELAELKQQLKNPQYTEEEKEQLEQADKRLEQAQEQQNQA 488 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456666666666666652 333444444455555555554 1 12334344443 334444444
Q ss_pred HhhhHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 038527 449 EGEMDVVEALNQSLIVRERKSNDELQEARKEL 480 (630)
Q Consensus 449 ~~~l~~~e~~nq~L~~ker~sndElq~ark~l 480 (630)
...+..++.--+.+-..-.++.++|+.+|.++
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 520 (1201)
T PF12128_consen 489 QQAVEELQAEEQELRKERDQAEEELRQARREL 520 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444455566777766654
No 23
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.94 E-value=19 Score=43.49 Aligned_cols=65 Identities=25% Similarity=0.324 Sum_probs=46.8
Q ss_pred HHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc-ccc-------c---HHHHHHHHHHHHHHHHHHhhhHHHHHhhHHH
Q 038527 395 RKIIELQKGLDAKQALELEIEQKRGTIQVMKHM-REE-------N---VEVQEKMDAIIKEIKEKEGEMDVVEALNQSL 462 (630)
Q Consensus 395 ~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~-~~~-------d---~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L 462 (630)
.+|..||+-|.. ||.||..|+..+.+...- +.. . ...|.+|+.+.-+|..+..++..+.+-..++
T Consensus 238 ~ki~~lEr~l~~---le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~ 313 (775)
T PF10174_consen 238 TKIASLERMLRD---LEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETL 313 (775)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888766 999999998877655442 111 1 1256789999999999998887666655555
No 24
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=93.89 E-value=20 Score=43.52 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=11.3
Q ss_pred HHHHhhhhCCCCCccccc
Q 038527 581 AQSEMNQYNPSGRYTIPE 598 (630)
Q Consensus 581 Al~E~neyN~sgry~v~e 598 (630)
|...+..+.+.|+.+.+.
T Consensus 634 a~~~~~~~~~~g~~v~~~ 651 (1179)
T TIGR02168 634 ALELAKKLRPGYRIVTLD 651 (1179)
T ss_pred HHHHHHHcCCCceEEecC
Confidence 666666666777655443
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.22 E-value=39 Score=44.75 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchh----HHhhhHHhHHHhhhhhHHHhh
Q 038527 380 WRLAQVHKEEKEKLRRKIIELQKGLD----AKQALELEIEQKRGTIQVMKH 426 (630)
Q Consensus 380 lkL~e~hkrEKe~~~~kil~LEkqLd----~kQ~LELEi~qlkg~L~vmKh 426 (630)
-.++....+.-.++...|-+|+.+|. +.+++|-....|...|+.+++
T Consensus 1089 ~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1089 QAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555544443 233444444444444444444
No 26
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.02 E-value=7.7 Score=41.73 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhchh-HHhhhHHhHHHhhhhhHHHhhc
Q 038527 388 EEKEKLRRKIIELQKGLD-AKQALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 388 rEKe~~~~kil~LEkqLd-~kQ~LELEi~qlkg~L~vmKh~ 427 (630)
.++.++...|.++++.++ .+..=.-||.+|+.++..+.++
T Consensus 251 ~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 251 EQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 344555555555555554 2223445555555555554443
No 27
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=24 Score=42.04 Aligned_cols=100 Identities=21% Similarity=0.157 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Q 038527 328 SQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAK 407 (630)
Q Consensus 328 ~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~k 407 (630)
..|-+.-..+..+.+.|++..........++..|...-..+....++---++.+.++.-+-+.+...+++-+++.++.+.
T Consensus 513 ~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~ 592 (698)
T KOG0978|consen 513 LTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAEL 592 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777888888888888888888888888887777777777778888889988888888888888888777542
Q ss_pred -----------hhhHHhHHHhhhhhHHHhhc
Q 038527 408 -----------QALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 408 -----------Q~LELEi~qlkg~L~vmKh~ 427 (630)
+.||-|+.+|+++|.-++.+
T Consensus 593 ~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 593 ELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56788888888888888886
No 28
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.80 E-value=34 Score=43.03 Aligned_cols=181 Identities=15% Similarity=0.162 Sum_probs=94.5
Q ss_pred HHHhhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH
Q 038527 277 EMKYLETSTYLDLTMEQM---DEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNET 353 (630)
Q Consensus 277 E~k~~e~~~sL~r~meEk---~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~ 353 (630)
...+++....+...-+++ ..+...+.+|+... +.-.++.+...+.-.+++.+|+.....+........++......
T Consensus 493 q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~-q~~~~~~~~~~~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e 571 (1317)
T KOG0612|consen 493 QHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA-QKKNDNAADSLEKVNSLRKQLEEAELDMRAESEDAGKLRKHSKE 571 (1317)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhh
Confidence 345555555555444444 34457777888877 44556666677777778888887655555444444444444444
Q ss_pred HHHhhHHHHHHh--------HhhhHHHhhhh--HHHHHHHH-------HHHHHHHHHHHHHHHHHhchhHHhhhHHhHHH
Q 038527 354 ERKKLHSEKIMN--------ERATLEQKKAD--EKVWRLAQ-------VHKEEKEKLRRKIIELQKGLDAKQALELEIEQ 416 (630)
Q Consensus 354 er~kl~~E~~kn--------~lA~~EQ~kad--e~vlkL~e-------~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~q 416 (630)
--+.++.+.+.+ .+..-++..-+ ..+.-.++ .+..+..++-+.|.-|+.-+.++++.++-+++
T Consensus 572 ~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e 651 (1317)
T KOG0612|consen 572 LSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEE 651 (1317)
T ss_pred hhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH
Confidence 444444444432 11111111111 11222222 33456667777888888888777777777776
Q ss_pred hhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHH
Q 038527 417 KRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSL 462 (630)
Q Consensus 417 lkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L 462 (630)
|+-..+ .+. .|++--..=..+.-+|+...++++.+.+-|+.+
T Consensus 652 l~r~~~--e~~--~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 652 LKRENQ--ERI--SDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543332 221 111110111234455555566666666666665
No 29
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=92.77 E-value=32 Score=42.70 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=40.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHhhHH--HHHHHhhccHHHHHHHHHHHHh
Q 038527 431 NVEVQEKMDAIIKEIKEKEGEMDVVEALNQS--LIVRERKSNDELQEARKELINS 483 (630)
Q Consensus 431 d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~--L~~ker~sndElq~ark~li~~ 483 (630)
-++|++.|..|+.+.+..++.+.+++.+... +-.++.+--+++..+=+++|+.
T Consensus 866 ~~eik~ei~rlk~~i~~~ee~~~~~~e~~~~~~~~~~~~~k~~~~k~~~~e~L~~ 920 (1074)
T KOG0250|consen 866 VAEIKREIKRLKRQIQMCEESLGELEELHRGLHEARKELKKEDELKVTLDELLKA 920 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 3678999999999999999999999999888 4456666666666664444443
No 30
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=17 Score=43.77 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=25.0
Q ss_pred hhHHhHHHhhhhhHHHhhc-cc---ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 038527 409 ALELEIEQKRGTIQVMKHM-RE---ENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIV 464 (630)
Q Consensus 409 ~LELEi~qlkg~L~vmKh~-~~---~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ 464 (630)
.|.--++||.|+|+=...- .. +=.++-+-++.+..++.++...+..+...++.|+.
T Consensus 448 tLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~ 507 (1118)
T KOG1029|consen 448 TLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAP 507 (1118)
T ss_pred HHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4556666777776643331 11 11112222333344444444444444555555543
No 31
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.49 E-value=39 Score=42.97 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=5.1
Q ss_pred HHHHHHHHhh
Q 038527 525 ELCSLWEEYL 534 (630)
Q Consensus 525 ~l~s~Wq~~l 534 (630)
.+-.+|+.-.
T Consensus 1145 ~~~~~w~~~~ 1154 (1311)
T TIGR00606 1145 IIRDLWRSTY 1154 (1311)
T ss_pred HHHHHHHHHc
Confidence 3445666543
No 32
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=92.34 E-value=30 Score=41.32 Aligned_cols=215 Identities=20% Similarity=0.271 Sum_probs=108.0
Q ss_pred hhhhhhCCCCcChhhHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 038527 232 GDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTME-QMDEMNKSRNEEIRKMQQ 310 (630)
Q Consensus 232 g~~Lrk~gdLKTv~ei~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~me-Ek~~l~~~yneE~~kmQ~ 310 (630)
=+|||+. .|+-..-+..++.|...+|-+-+-.+++..-+ +|...-+++.|.-+ |.+.|-..-.++|..|.+
T Consensus 788 mrflRrQ-eLreLR~LQkeE~R~qqqL~~k~~~q~Eq~~r-------rFeqE~~~kkr~~d~EmenlErqQkq~iE~~Eq 859 (1187)
T KOG0579|consen 788 MRFLRRQ-ELRELRRLQKEEARQQQQLQAKGIKQVEQQAR-------RFEQEQTNKKRTSDLEMENLERQQKQEIEDTEQ 859 (1187)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3555554 55666666777777666665555544433222 22222222222221 234444444555554433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcHHHHHh------hHHHHHHh----HhhhHHHhhh
Q 038527 311 SAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREA-----KNETERKK------LHSEKIMN----ERATLEQKKA 375 (630)
Q Consensus 311 ~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a-----~~~~er~k------l~~E~~kn----~lA~~EQ~ka 375 (630)
.|..+.-++..++|.+-|.-|+....+-|+.-+... .+.-.|+- -+-++++. ..-..-||.+
T Consensus 860 ---~h~~rlR~eakRir~EQekd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~ekdFv~kqqq~l 936 (1187)
T KOG0579|consen 860 ---AHEHRLRNEAKRIRIEQEKDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKEKDFVMKQQQNL 936 (1187)
T ss_pred ---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344455555555666655555554444443322111 11111111 11111111 2234456677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhchh-HHh--hhHHhHHHhhhhhHHHhhc-ccccHHHHHHHHHHHHHHHHHHhh
Q 038527 376 DEKVWRLAQVHKEEKEKLRRKIIELQKGLD-AKQ--ALELEIEQKRGTIQVMKHM-REENVEVQEKMDAIIKEIKEKEGE 451 (630)
Q Consensus 376 de~vlkL~e~hkrEKe~~~~kil~LEkqLd-~kQ--~LELEi~qlkg~L~vmKh~-~~~d~~~~~k~~~l~~~l~ek~~~ 451 (630)
+-.+.+++++||.+.-.+...-+---.+|- ++. --|||-.||+.+-+..|.. .|+= .. --+.=|.--+.+
T Consensus 937 e~~lkrm~~~~k~ema~iErecLm~Kq~LlRarEaaiWElEe~qlqEkhqL~kqqlKDqY--fl----qRhqlL~rHekE 1010 (1187)
T KOG0579|consen 937 EAMLKRMAEKHKEEMASIERECLMQKQNLLRAREAAIWELEEKQLQEKHQLHKQQLKDQY--FL----QRHQLLARHEKE 1010 (1187)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH--HH----HHHHHHHHHHHH
Confidence 778888999998765544443322222221 111 1388889999988888875 2221 00 112335556778
Q ss_pred hHHHHHhhHHHH
Q 038527 452 MDVVEALNQSLI 463 (630)
Q Consensus 452 l~~~e~~nq~L~ 463 (630)
|+.|+-.||.+|
T Consensus 1011 ~eQmqrynQr~i 1022 (1187)
T KOG0579|consen 1011 MEQMQRYNQREI 1022 (1187)
T ss_pred HHHHHHHHHHHH
Confidence 899999999987
No 33
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.12 E-value=38 Score=41.96 Aligned_cols=120 Identities=18% Similarity=0.289 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHH
Q 038527 312 AHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKE 391 (630)
Q Consensus 312 a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe 391 (630)
...-+++|.-+++.+..++.+-.+.|..-..+++.+....+.-+.++.. +..++.++...+-..-..+...-.
T Consensus 813 ~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~-------~~~~~~~~~~el~~~k~k~~~~dt 885 (1174)
T KOG0933|consen 813 RENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK-------VEKDVKKAQAELKDQKAKQRDIDT 885 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHhHHHHHHHHHHHHHHHHHhhhH
Confidence 3444555555555555555555555555555555555555544444421 122222222222222222222233
Q ss_pred HHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHH
Q 038527 392 KLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAI 441 (630)
Q Consensus 392 ~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l 441 (630)
++-.-+..-|+-+.+++..+|+++.|.+-+.-|+. +-.+..++|+.|
T Consensus 886 ~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~---e~~~~~k~v~~l 932 (1174)
T KOG0933|consen 886 EISGLLTSQEKCLSEKSDGELERKKLEHEVTKLES---EKANARKEVEKL 932 (1174)
T ss_pred HHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhh---hHHHHHHHHHHH
Confidence 34444456677788899999999999888876665 233344444443
No 34
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.02 E-value=39 Score=41.86 Aligned_cols=105 Identities=17% Similarity=0.247 Sum_probs=61.7
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 255 TSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQK 334 (630)
Q Consensus 255 ~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~ 334 (630)
....+.+++..|+....++..+.+.++.+...+...-++...|-++--.||-.--..-.+...-.-.+.-+...-|..+.
T Consensus 242 ~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~ 321 (1174)
T KOG0933|consen 242 AEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKK 321 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667777777777777776666665555555555555544444333333444444445555556666666
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHhhH
Q 038527 335 MQLEEHEKQLQYREAKNETERKKLH 359 (630)
Q Consensus 335 ~eL~~r~k~L~~~~a~~~~er~kl~ 359 (630)
..|+--.+.++++...-..+|++|.
T Consensus 322 ~tl~~e~~k~e~i~~~i~e~~~~l~ 346 (1174)
T KOG0933|consen 322 ETLNGEEEKLEEIRKNIEEDRKKLK 346 (1174)
T ss_pred HHHhhhHHHHHHHHHhHHHHHHHHH
Confidence 6666666666666666666666664
No 35
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=92.00 E-value=16 Score=37.30 Aligned_cols=133 Identities=18% Similarity=0.271 Sum_probs=80.8
Q ss_pred hhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 251 DQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQL 330 (630)
Q Consensus 251 ~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eL 330 (630)
..-..++.+..|...|...+++.+..|..|......|+ +.|..|++.++.+.--+ -+.+.-...|+. .
T Consensus 13 ~l~~Nnr~L~~L~~dl~~~~~~~~~~e~~~~~KY~~lR----------~ElI~ELkqsKklydnY-YkL~~KY~~LK~-~ 80 (196)
T PF15272_consen 13 QLDQNNRALSDLNQDLRERDERYELQETSYKEKYQQLR----------QELINELKQSKKLYDNY-YKLYSKYQELKK-S 80 (196)
T ss_pred HHHHhHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHH----------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-H
Confidence 34467889999999999999999999999988887776 56677777665554333 234444444444 2
Q ss_pred HHHHHHHHHHHHHHH----HHHhhcHHHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 038527 331 EAQKMQLEEHEKQLQ----YREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLD 405 (630)
Q Consensus 331 e~k~~eL~~r~k~L~----~~~a~~~~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd 405 (630)
-.+-..|..++..|+ .+.+..+...+.+.+++-.-+ -....|..++++++-+.-.+|.+||.+|.
T Consensus 81 ~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~----------~r~~el~~~r~~e~~~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 81 SKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLE----------LRNKELQNERERERIAYESRIADLERQLN 149 (196)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333333332 223333333344433322212 22334777778888888999999888876
No 36
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.68 E-value=43 Score=41.68 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=38.3
Q ss_pred hhhhhHHHHHHHHHHHHhhhHHHHHHHhhh---hhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 253 RKTSTLVTNLTRTLEVKDMRYKEMEMKYLE---TSTYLDLTME-----------QMDEMNKSRNEEIRKMQQSAHDHFQK 318 (630)
Q Consensus 253 rk~~~lv~~L~n~I~~kn~~l~elE~k~~e---~~~sL~r~me-----------Ek~~l~~~yneE~~kmQ~~a~~~~~~ 318 (630)
..+..+|+.+...|.--.+++++++.+... +.+...+.+. ++++-...-.++|.+.|...-...++
T Consensus 224 ~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~k 303 (1074)
T KOG0250|consen 224 DHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEK 303 (1074)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777777777777777777776653 3333333332 23444445555666666654444333
No 37
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.67 E-value=16 Score=44.80 Aligned_cols=70 Identities=21% Similarity=0.302 Sum_probs=41.3
Q ss_pred HHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHH
Q 038527 406 AKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARK 478 (630)
Q Consensus 406 ~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark 478 (630)
.|-+|||.|.+|+.++.--..= -.....-+.++..++.++..+|...+-.-+.|+-+|-..+.-|-.+++
T Consensus 301 ~kt~lel~~kdlq~~i~~n~q~---r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~ 370 (1200)
T KOG0964|consen 301 KKTKLELKIKDLQDQITGNEQQ---RNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQ 370 (1200)
T ss_pred HhhhhhhhhHHHHHHhhhhhhh---hhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 3566888888877666532221 111233455666677777777777777777776666555555544443
No 38
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=91.57 E-value=35 Score=40.48 Aligned_cols=167 Identities=18% Similarity=0.266 Sum_probs=82.4
Q ss_pred CCcChhhHHHhhh-----hhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHH-----
Q 038527 240 DLKTVSGKEAEDQ-----RKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTM-EQMDEMNKSRNEEIRKM----- 308 (630)
Q Consensus 240 dLKTv~ei~~E~~-----rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~m-eEk~~l~~~yneE~~km----- 308 (630)
-+||.+=|..... ...-.+++-++..-..-.++|..||++|.-.-.-++-.| .|-+.+...|..|+.++
T Consensus 465 TiRtaslvtrq~~Eheqe~~l~EQmSgYKrmRrqHqkqL~~lE~r~k~e~eehr~~ldrEle~~~~~f~~e~ekl~~khq 544 (948)
T KOG0577|consen 465 TIRTASLVTRQIQEHEQESELREQMSGYKRMRRQHQKQLLALEERLKGEREEHRARLDRELETLRANFSAELEKLARKHQ 544 (948)
T ss_pred HHhHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4566655533322 245567788888888899999999999976533333222 22344444444444333
Q ss_pred ------HHH---HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHhhhhH
Q 038527 309 ------QQS---AHDHFQKIYLE--HEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADE 377 (630)
Q Consensus 309 ------Q~~---a~~~~~~i~~e--~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~kade 377 (630)
-.. +...+++.+.. ...|..=|++++++...+..++-..-..|.+-.++-.++--..+-+.+.|++|.+
T Consensus 545 a~~ekeak~~~a~EkKfqq~i~~qqkk~l~~~~e~qkkeYK~~KE~~KeeL~e~~stPkrek~e~l~~qKe~Lq~~qaee 624 (948)
T KOG0577|consen 545 AIGEKEAKAASAEEKKFQQHILGQQKKELKAYLEAQKKEYKLNKEQLKEELQENPSTPKREKAEWLLRQKENLQQCQAEE 624 (948)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 111 11122222211 2234445566666666555554332222222222111111111233333333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc
Q 038527 378 KVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 378 ~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~ 427 (630)
..= +++ .++|-||||+.+.+-+.=.+.|-
T Consensus 625 Ea~----------------ll~-----~qrqy~ele~r~ykRk~l~~rH~ 653 (948)
T KOG0577|consen 625 EAG----------------LLR-----RQRQYLELECRRYKRKMLLARHE 653 (948)
T ss_pred Hhh----------------HHH-----HHHHHHHHHHHHHHHHHHHHhhh
Confidence 211 111 23567889999999888888885
No 39
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.48 E-value=36 Score=40.78 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038527 320 YLEHEKATSQLEAQKMQLEEHEKQLQYREA 349 (630)
Q Consensus 320 ~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a 349 (630)
+.+-.+.|..||+++.+.....++-+...|
T Consensus 497 L~eE~~~R~~lEkQL~eErk~r~~ee~~aa 526 (697)
T PF09726_consen 497 LAEERRQRASLEKQLQEERKARKEEEEKAA 526 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 444455666777766666655554443333
No 40
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.12 E-value=63 Score=42.52 Aligned_cols=164 Identities=18% Similarity=0.274 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHH------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 038527 256 STLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNK------SRNEEIRKMQQ-SAHDHFQKIYLEHEKATS 328 (630)
Q Consensus 256 ~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~------~yneE~~kmQ~-~a~~~~~~i~~e~ekl~~ 328 (630)
..-+..|..+|...+..+.-|++...++...+...+.+..+|-. ..+.++..-+. .--..+.+.-.+..+|..
T Consensus 1242 ~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~ 1321 (1822)
T KOG4674|consen 1242 LEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKE 1321 (1822)
T ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 34457788888888888888888888888888877766654432 23333332211 112334444455555666
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------hhcHHHHHhhHHHHHHh-----Hh-hhHHHhhhh-HHHHHHHHHHHHHHHHHH
Q 038527 329 QLEAQKMQLEEHEKQLQYRE-------AKNETERKKLHSEKIMN-----ER-ATLEQKKAD-EKVWRLAQVHKEEKEKLR 394 (630)
Q Consensus 329 eLe~k~~eL~~r~k~L~~~~-------a~~~~er~kl~~E~~kn-----~l-A~~EQ~kad-e~vlkL~e~hkrEKe~~~ 394 (630)
+|+++-+.+..=.+.++.+. -....+++.+..+.+.. .| ++...+.|. ..+...-..|.-..+.+.
T Consensus 1322 el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q~~el~~~~~~~~~~~e~t~ 1401 (1822)
T KOG4674|consen 1322 ELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQELELSDKKKAHELMQEDTS 1401 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555444444333333322 11112333333332221 22 222222222 333344445555556666
Q ss_pred HHHHHHHhchhHHhhhHHhHHHhhhhhHH
Q 038527 395 RKIIELQKGLDAKQALELEIEQKRGTIQV 423 (630)
Q Consensus 395 ~kil~LEkqLd~kQ~LELEi~qlkg~L~v 423 (630)
.|.-.+...+. |.-||+.|+.+|+-
T Consensus 1402 rk~e~~~~k~~----~~~e~~sl~eeL~e 1426 (1822)
T KOG4674|consen 1402 RKLEKLKEKLE----LSEELESLKEELEE 1426 (1822)
T ss_pred HHHHHHHHHHh----HHHHHHHHHHHHHH
Confidence 66666655555 66778888877754
No 41
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=91.07 E-value=2.7 Score=39.61 Aligned_cols=92 Identities=22% Similarity=0.373 Sum_probs=69.7
Q ss_pred HHHHHHHH----HHhchhHHhhhHHhHHHhhhhhHHHhhcccccHHHHHHH---------HHHHHHHHHHHhhhHHHHHh
Q 038527 392 KLRRKIIE----LQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKM---------DAIIKEIKEKEGEMDVVEAL 458 (630)
Q Consensus 392 ~~~~kil~----LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~---------~~l~~~l~ek~~~l~~~e~~ 458 (630)
..+++..+ |+.-+.+||+||.++...+-.|+-...+ ++|+.|.+.+ +++.++|+++.+.| +--
T Consensus 10 ~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l-~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~L---e~r 85 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKL-DEDAPVYKKVGNLLVKVSKEEAVDELEERKETL---ELR 85 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHH---HHH
Confidence 34444444 4445568999999999998888887777 4566666664 56667776666655 677
Q ss_pred hHHHHHHHhhccHHHHHHHHHHHHhhhcc
Q 038527 459 NQSLIVRERKSNDELQEARKELINSLKEG 487 (630)
Q Consensus 459 nq~L~~ker~sndElq~ark~li~~l~~~ 487 (630)
-.||-..|+....+|++-+.+|++-|..-
T Consensus 86 i~tLekQe~~l~e~l~eLq~~i~~~l~~~ 114 (119)
T COG1382 86 IKTLEKQEEKLQERLEELQSEIQKALGDA 114 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88999999999999999999999988753
No 42
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.79 E-value=52 Score=41.00 Aligned_cols=115 Identities=17% Similarity=0.188 Sum_probs=66.3
Q ss_pred ceeeeeecCCCCCCChhhhhhhhCCCCcChhhHHHhhhh-hhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHH-
Q 038527 215 LYGWIARDDDYNSKSLIGDHLRKNGDLKTVSGKEAEDQR-KTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTME- 292 (630)
Q Consensus 215 LYGWvAradDy~s~g~ig~~Lrk~gdLKTv~ei~~E~~r-k~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~me- 292 (630)
|=|=+-..--+=++|..| ++ - +|-+.++.. +.++|..-|.+... ....+..++.+.+-..+.|..++-
T Consensus 629 ldGtl~~ksGlmsGG~s~---~~-w-----dek~~~~L~~~k~rl~eel~ei~~-~~~e~~~v~~~i~~le~~~~~~~~~ 698 (1141)
T KOG0018|consen 629 LDGTLIHKSGLMSGGSSG---AK-W-----DEKEVDQLKEKKERLLEELKEIQK-RRKEVSSVESKIHGLEMRLKYSKLD 698 (1141)
T ss_pred eeeeEEeccceecCCccC---CC-c-----CHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334443444455666666 22 3 333333333 44555555655555 333666666666666555555543
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 293 ---------QMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEH 340 (630)
Q Consensus 293 ---------Ek~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r 340 (630)
++++-++.++.+|...+-... .+.+.++.-+.-..+|+.+|++++.+
T Consensus 699 ~~~~k~~l~~~~~El~~~~~~i~~~~p~i~-~i~r~l~~~e~~~~~L~~~~n~ved~ 754 (1141)
T KOG0018|consen 699 LEQLKRSLEQNELELQRTESEIDEFGPEIS-EIKRKLQNREGEMKELEERMNKVEDR 754 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666667766655555 66777777777777777777777765
No 43
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.28 E-value=22 Score=42.45 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 313 HDHFQKIYLEHEKATSQLEAQKMQLEE 339 (630)
Q Consensus 313 ~~~~~~i~~e~ekl~~eLe~k~~eL~~ 339 (630)
|.++.-+......++.+|...+++-|.
T Consensus 445 Rsqis~l~~~Er~lk~eL~qlr~ene~ 471 (697)
T PF09726_consen 445 RSQISSLTNNERSLKSELSQLRQENEQ 471 (697)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHH
Confidence 333333444334555555555444443
No 44
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.73 E-value=23 Score=40.30 Aligned_cols=86 Identities=23% Similarity=0.322 Sum_probs=66.0
Q ss_pred HHHHHHhch-hHHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHH
Q 038527 396 KIIELQKGL-DAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQ 474 (630)
Q Consensus 396 kil~LEkqL-d~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq 474 (630)
+++.|-+|- |-+|.|.-+..+|+..|.+..- ++.+ ..+|.+|+.+|+-.-++.+..+.++-+|...--+-.+..+
T Consensus 308 ~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~---e~~e-~~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~ 383 (521)
T KOG1937|consen 308 QMEELTQQWEDTRQPLLQKKLQLREELKNLET---EDEE-IRRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQ 383 (521)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc---hHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhH
Confidence 445555554 4577777777777777765543 5566 7899999999999999999999999999877666666666
Q ss_pred HHHHHHHHhhhcc
Q 038527 475 EARKELINSLKEG 487 (630)
Q Consensus 475 ~ark~li~~l~~~ 487 (630)
|+..+.++.++
T Consensus 384 --rk~ytqrikEi 394 (521)
T KOG1937|consen 384 --RKVYTQRIKEI 394 (521)
T ss_pred --HHHHHHHHHHH
Confidence 88888888776
No 45
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.53 E-value=42 Score=37.98 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=11.3
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhH
Q 038527 248 EAEDQRKTSTLVTNLTRTLEVKDMRY 273 (630)
Q Consensus 248 ~~E~~rk~~~lv~~L~n~I~~kn~~l 273 (630)
..+..+...+.+..|..++...+..+
T Consensus 172 ~k~~~~e~~~~i~~l~~~i~~l~~~i 197 (562)
T PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQI 197 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 46
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=89.42 E-value=71 Score=40.46 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhchhH-----------HhhhHHhHHHhhhhhHHH
Q 038527 388 EEKEKLRRKIIELQKGLDA-----------KQALELEIEQKRGTIQVM 424 (630)
Q Consensus 388 rEKe~~~~kil~LEkqLd~-----------kQ~LELEi~qlkg~L~vm 424 (630)
..+..+-..+-+|++++++ =+.|+-+|++|...|.-.
T Consensus 743 ~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~i 790 (1201)
T PF12128_consen 743 AAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRI 790 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555443 244555555555555443
No 47
>PRK02224 chromosome segregation protein; Provisional
Probab=89.27 E-value=58 Score=39.24 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhch
Q 038527 391 EKLRRKIIELQKGL 404 (630)
Q Consensus 391 e~~~~kil~LEkqL 404 (630)
+.+...+..|+..+
T Consensus 345 e~~~~~~~~le~~~ 358 (880)
T PRK02224 345 ESLREDADDLEERA 358 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 48
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=88.71 E-value=51 Score=37.93 Aligned_cols=95 Identities=9% Similarity=0.141 Sum_probs=58.0
Q ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 254 KTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQ 333 (630)
Q Consensus 254 k~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k 333 (630)
...+.|..|...|...+.-+.-......+.......++.+++.....|..++..-+..-..-...+ .....|...|..-
T Consensus 169 ~~~~kve~L~~Ei~~lke~l~~~~~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~-~~~k~Le~kL~~a 247 (522)
T PF05701_consen 169 ENEEKVEELSKEIIALKESLESAKLAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEEL-EAAKDLESKLAEA 247 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 456677788888888887777776666666666666666777777777777654333333322222 3445555556555
Q ss_pred HHHHHHHHHHHHHHHh
Q 038527 334 KMQLEEHEKQLQYREA 349 (630)
Q Consensus 334 ~~eL~~r~k~L~~~~a 349 (630)
..++..-..+|.....
T Consensus 248 ~~~l~~Lq~El~~~~~ 263 (522)
T PF05701_consen 248 SAELESLQAELEAAKE 263 (522)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566555555554443
No 49
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=88.61 E-value=55 Score=38.17 Aligned_cols=178 Identities=19% Similarity=0.226 Sum_probs=104.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH-----HHHhh
Q 038527 284 STYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNET-----ERKKL 358 (630)
Q Consensus 284 ~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~-----er~kl 358 (630)
..+.+-++++-.-+.+.|..||+..+..++.-.- -+..+-.+.+|...++++...-... ...|.. -++|+
T Consensus 203 ~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t--~~~r~~F~~eL~~Ai~eiRaqye~~---~~~nR~diE~~Y~~kI 277 (546)
T KOG0977|consen 203 QNRVQTLLEELAFLKRIHKQEIEEERRKARRDTT--ADNREYFKNELALAIREIRAQYEAI---SRQNRKDIESWYKRKI 277 (546)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHhhccc--ccchHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHH
Confidence 3445556677778888888888888777655441 3444555677777777776533222 222222 23344
Q ss_pred HHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc-ccccHHHHHH
Q 038527 359 HSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHM-REENVEVQEK 437 (630)
Q Consensus 359 ~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~-~~~d~~~~~k 437 (630)
.+=......+..++..+.|.|+++.. .=-.+..++-+||..- +.|+-.|+.|+-+|.=-..+ ...=.+--..
T Consensus 278 ~~i~~~~~~~~~~~~~~rEEl~~~R~----~i~~Lr~klselE~~n---~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~ 350 (546)
T KOG0977|consen 278 QEIRTSAERANVEQNYAREELRRIRS----RISGLRAKLSELESRN---SALEKRIEDLEYQLDEDQRSFEQALNDKDAE 350 (546)
T ss_pred HHHHhhhccccchhHHHHHHHHHHHh----cccchhhhhccccccC---hhHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence 33333346778888888888887654 2234566666666543 56888888888777654444 1111111233
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 038527 438 MDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKEL 480 (630)
Q Consensus 438 ~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~l 480 (630)
|.+|.++-....-||+.|=+..++|- -|+-.-||-|
T Consensus 351 i~~mReec~~l~~Elq~LlD~ki~Ld-------~EI~~YRkLL 386 (546)
T KOG0977|consen 351 IAKMREECQQLSVELQKLLDTKISLD-------AEIAAYRKLL 386 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhchHhHHH-------hHHHHHHHHh
Confidence 55666666666666666666666663 3555556543
No 50
>PRK09039 hypothetical protein; Validated
Probab=88.54 E-value=42 Score=36.68 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHhhhcc-CCcccccee
Q 038527 470 NDELQEARKELINSLKEG-RTRATIGVK 496 (630)
Q Consensus 470 ndElq~ark~li~~l~~~-~~~~~IgiK 496 (630)
..+|...|.+++..|.++ +++..|.|.
T Consensus 189 ~~~l~~~~~~~~~~l~~~~~~~~~iri~ 216 (343)
T PRK09039 189 VQELNRYRSEFFGRLREILGDREGIRIV 216 (343)
T ss_pred HHHHHHhHHHHHHHHHHHhCCCCCcEEE
Confidence 358899999999999877 776666665
No 51
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=88.06 E-value=31 Score=39.39 Aligned_cols=73 Identities=22% Similarity=0.265 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHH-hHHHh
Q 038527 339 EHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALEL-EIEQK 417 (630)
Q Consensus 339 ~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LEL-Ei~ql 417 (630)
+.|-++++.=.+.+.+-..|...+-+ -.+|.-..|.|+ |||||..--..+-|..+++...+-.| |-|+|
T Consensus 446 sqclEmdk~LskKeeeverLQ~lkge-------lEkat~SALdlL---krEKe~~EqefLslqeEfQk~ekenl~ERqkL 515 (527)
T PF15066_consen 446 SQCLEMDKTLSKKEEEVERLQQLKGE-------LEKATTSALDLL---KREKETREQEFLSLQEEFQKHEKENLEERQKL 515 (527)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44555555444444444333322222 224554555555 47777777777777777665554443 34455
Q ss_pred hhhh
Q 038527 418 RGTI 421 (630)
Q Consensus 418 kg~L 421 (630)
|.+|
T Consensus 516 Ks~l 519 (527)
T PF15066_consen 516 KSRL 519 (527)
T ss_pred HHHH
Confidence 5444
No 52
>PRK03918 chromosome segregation protein; Provisional
Probab=87.64 E-value=71 Score=38.32 Aligned_cols=6 Identities=0% Similarity=0.119 Sum_probs=2.7
Q ss_pred HHhcCC
Q 038527 510 AKAKFP 515 (630)
Q Consensus 510 c~~k~~ 515 (630)
|++.+.
T Consensus 441 c~~~L~ 446 (880)
T PRK03918 441 CGRELT 446 (880)
T ss_pred CCCcCC
Confidence 444443
No 53
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=87.48 E-value=0.34 Score=38.68 Aligned_cols=25 Identities=24% Similarity=0.745 Sum_probs=19.5
Q ss_pred CeeeccCCCCCCccccchHHHHhhhhccC
Q 038527 38 TAYRCPFCRGKKETDYLYKELLQHASDVG 66 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y~~~~LLqHA~gvg 66 (630)
.+|.||||+. .++..+|+.|-...-
T Consensus 1 ~~f~CP~C~~----~~~~~~L~~H~~~~H 25 (54)
T PF05605_consen 1 DSFTCPYCGK----GFSESSLVEHCEDEH 25 (54)
T ss_pred CCcCCCCCCC----ccCHHHHHHHHHhHC
Confidence 3799999974 388899999976543
No 54
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.82 E-value=1e+02 Score=39.34 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 038527 432 VEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKEL 480 (630)
Q Consensus 432 ~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~l 480 (630)
+.+.+.+..+..+|.+..++....+.--+.+-.+-.....+|...+++|
T Consensus 573 ~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL 621 (1311)
T TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQL 621 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666666665444444444444444444444444444
No 55
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=86.70 E-value=1e+02 Score=39.13 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=46.4
Q ss_pred hhhhhhhhCC-CCcChhhHHHhhhh----hhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q 038527 230 LIGDHLRKNG-DLKTVSGKEAEDQR----KTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLT 290 (630)
Q Consensus 230 ~ig~~Lrk~g-dLKTv~ei~~E~~r----k~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~ 290 (630)
.|++||-..+ +.-||.++..+-.. -+-.+|.+|+++|..--..|..++..++.|---++|+
T Consensus 1479 ~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra 1544 (1758)
T KOG0994|consen 1479 QVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARA 1544 (1758)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHH
Confidence 4888885544 88888887766554 4678899999999888888888888888776555544
No 56
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=86.60 E-value=40 Score=40.22 Aligned_cols=202 Identities=18% Similarity=0.147 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 256 STLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSR----NEEIRKMQQSAHDHFQKIYLEHEKATSQLE 331 (630)
Q Consensus 256 ~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~y----neE~~kmQ~~a~~~~~~i~~e~ekl~~eLe 331 (630)
......+.-.+...+..+...+..+.-...++..+-.+........ .+...+++..+.....+...+...+..+|+
T Consensus 113 q~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~l~ 192 (670)
T KOG0239|consen 113 QSNLSELNMALLESVEELSQAEEDNPSIFVSLLELAQENRGLYLDLSKVTPENSLSLLDLALKESLKLESDLGDLVTELE 192 (670)
T ss_pred ccchhhhhhhhhhhhHhhhhhhcccccHHHHHHHHHhhhccccccccccchhhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3334444444444455555555555555556555554442222111 122222444666666666666666777776
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhH
Q 038527 332 AQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALE 411 (630)
Q Consensus 332 ~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LE 411 (630)
.-+...+.-..+|.. .-.++..|+.... ....+..++..|+.......+-
T Consensus 193 ~v~~~~~~~~~~l~~----~~~~~~~l~~~~~-------------------------~~~~~~~~~~~l~~~~~~~~~~- 242 (670)
T KOG0239|consen 193 HVTNSISELESVLKS----AQEERRVLADSLG-------------------------NYADLRRNIKPLEGLESTIKKK- 242 (670)
T ss_pred HHHHHHHHHHHHhhh----hHHHHHHHHHHhh-------------------------hhhhHHHhhhhhhhhhhHHHHH-
Confidence 666666655555544 2223333322111 1122223333333333322222
Q ss_pred HhHHHhhhhhHHHhhc-ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhccCCc
Q 038527 412 LEIEQKRGTIQVMKHM-REENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEGRTR 490 (630)
Q Consensus 412 LEi~qlkg~L~vmKh~-~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~~l~~~~~~ 490 (630)
|..|+..|+.++.- .+-...+.....++++-+..-..-...+.+++..|..++ .-+.+|++|=+-+.++-
T Consensus 243 --i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-----~e~~~r~kL~N~i~eLk-- 313 (670)
T KOG0239|consen 243 --IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-----KEKEERRKLHNEILELK-- 313 (670)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhh--
Confidence 55555555555553 222333445555555555555555666778888887554 23466777776666652
Q ss_pred ccccee
Q 038527 491 ATIGVK 496 (630)
Q Consensus 491 ~~IgiK 496 (630)
.||.|.
T Consensus 314 GnIRV~ 319 (670)
T KOG0239|consen 314 GNIRVF 319 (670)
T ss_pred cCceEE
Confidence 246553
No 57
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=86.49 E-value=86 Score=38.11 Aligned_cols=91 Identities=13% Similarity=0.192 Sum_probs=50.4
Q ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 038527 252 QRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQ---QSAHDHFQKIYLEHEKATS 328 (630)
Q Consensus 252 ~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ---~~a~~~~~~i~~e~ekl~~ 328 (630)
.+.-.++-..|-.+|...++.|..+ ..-+..|.+++.++++++..-.++-..-. ....-.++-+-.+|--|+.
T Consensus 80 s~e~e~~~~~le~~l~e~~~~l~~~----~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lky 155 (769)
T PF05911_consen 80 SKEWEKIKSELEAKLAELSKRLAES----AAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKY 155 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433 22233445555566666654444322111 1223345666778888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038527 329 QLEAQKMQLEEHEKQLQY 346 (630)
Q Consensus 329 eLe~k~~eL~~r~k~L~~ 346 (630)
+|-..-+||+.|..+.+.
T Consensus 156 e~~~~~keleir~~E~~~ 173 (769)
T PF05911_consen 156 ELHVLSKELEIRNEEREY 173 (769)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888877764
No 58
>PRK04863 mukB cell division protein MukB; Provisional
Probab=84.86 E-value=1.4e+02 Score=39.03 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=30.1
Q ss_pred HHHHHhchhHHhhhHHhHHHhhhhhHHHhhc-c---cccHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 038527 397 IIELQKGLDAKQALELEIEQKRGTIQVMKHM-R---EENVEVQEKMDAIIKEIKEKEGEMDVVEA 457 (630)
Q Consensus 397 il~LEkqLd~kQ~LELEi~qlkg~L~vmKh~-~---~~d~~~~~k~~~l~~~l~ek~~~l~~~e~ 457 (630)
+.+++.+++.-|.--...++....|+=.+.+ + =.+.++...++.....+.++...+..++.
T Consensus 399 Laelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~ 463 (1486)
T PRK04863 399 LADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQ 463 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444333333334444444444444 3 12456666666666666666666654443
No 59
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=84.50 E-value=87 Score=36.38 Aligned_cols=99 Identities=22% Similarity=0.403 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-------hhHHhhhHHhHHHhhhhhH-HHhhc-cc--ccHHHHHHHHHHHHHHHHHHh
Q 038527 382 LAQVHKEEKEKLRRKIIELQKG-------LDAKQALELEIEQKRGTIQ-VMKHM-RE--ENVEVQEKMDAIIKEIKEKEG 450 (630)
Q Consensus 382 L~e~hkrEKe~~~~kil~LEkq-------Ld~kQ~LELEi~qlkg~L~-vmKh~-~~--~d~~~~~k~~~l~~~l~ek~~ 450 (630)
-+..-+.+...+...|..|.+. +..-+.++-+++.|...+. +...+ .. .=+++...++++.++|.+-..
T Consensus 318 ~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~ 397 (569)
T PRK04778 318 FLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEK 397 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555666666666544 5667788888888888888 44444 21 135688889999999999999
Q ss_pred hhHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 038527 451 EMDVVEALNQSLIVRERKSNDELQEARKEL 480 (630)
Q Consensus 451 ~l~~~e~~nq~L~~ker~sndElq~ark~l 480 (630)
+...+...-+.|-.-|..+.+.|+..++.|
T Consensus 398 eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L 427 (569)
T PRK04778 398 EQEKLSEMLQGLRKDELEAREKLERYRNKL 427 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888899888888888888888875
No 60
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=83.22 E-value=73 Score=34.50 Aligned_cols=93 Identities=27% Similarity=0.294 Sum_probs=42.9
Q ss_pred HHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhH----------HHHHhhHHH
Q 038527 393 LRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMD----------VVEALNQSL 462 (630)
Q Consensus 393 ~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~----------~~e~~nq~L 462 (630)
+..+|-+|+++|...++-.-.-.++++-+.=...+...-.++..+|.+|..+.++.-.+|- .--+.-..-
T Consensus 136 lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~ 215 (294)
T COG1340 136 LVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEE 215 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777776666544333333332222222222334555666666555555444331 111122233
Q ss_pred HHHHhhccHHHHHHHHHHHHhhh
Q 038527 463 IVRERKSNDELQEARKELINSLK 485 (630)
Q Consensus 463 ~~ker~sndElq~ark~li~~l~ 485 (630)
+++-+..-|++-++...+-+-|.
T Consensus 216 ~ve~~~~~~e~~ee~~~~~~elr 238 (294)
T COG1340 216 FVELSKKIDELHEEFRNLQNELR 238 (294)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Confidence 44555555555555554444333
No 61
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=82.94 E-value=79 Score=38.09 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=65.5
Q ss_pred eeecCCCCCC--ChhhhhhhhCCCCcChhhHHHhhhh---hhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q 038527 219 IARDDDYNSK--SLIGDHLRKNGDLKTVSGKEAEDQR---KTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQ 293 (630)
Q Consensus 219 vAradDy~s~--g~ig~~Lrk~gdLKTv~ei~~E~~r---k~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meE 293 (630)
+|+..|.+-. +.=-.|+-..+.=-|+.+++.+-.. ..+..|--+-++...-+..|...|.+...+-- ...+.+
T Consensus 62 ~aqk~d~E~ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r--ae~lpe 139 (916)
T KOG0249|consen 62 MAQKEDMEERITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR--AETLPE 139 (916)
T ss_pred HhhhcccccccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh--hhhhhh
Confidence 4666777521 2223566666666666665432221 22333333334444555555555555443322 233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 294 MDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEE 339 (630)
Q Consensus 294 k~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~ 339 (630)
-+.-++..+.+.. +|++|...|..-.++|..+++.+-.||..
T Consensus 140 veael~qr~~al~----~aee~~~~~eer~~kl~~~~qe~naeL~r 181 (916)
T KOG0249|consen 140 VEAELAQRNAALT----KAEEHSGNIEERTRKLEEQLEELNAELQR 181 (916)
T ss_pred hHHHHHHHHHHHH----HHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555554 57889999999999999999988777764
No 62
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=82.62 E-value=27 Score=35.32 Aligned_cols=90 Identities=21% Similarity=0.199 Sum_probs=70.8
Q ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 254 KTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQ 333 (630)
Q Consensus 254 k~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k 333 (630)
++...+.++...+....+.+..|+..+......+.++-.|++.|...|+.=|...||.+-- .+-=|...|...
T Consensus 83 kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~-------kn~lLEkKl~~l 155 (201)
T PF13851_consen 83 KDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGL-------KNLLLEKKLQAL 155 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 4566788888999999999999999999999999999999999999999877777666544 344555666666
Q ss_pred HHHHHHHHHHHHHHHhh
Q 038527 334 KMQLEEHEKQLQYREAK 350 (630)
Q Consensus 334 ~~eL~~r~k~L~~~~a~ 350 (630)
...|+.+..||...-+.
T Consensus 156 ~~~lE~keaqL~evl~~ 172 (201)
T PF13851_consen 156 SEQLEKKEAQLNEVLAA 172 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677777777754433
No 63
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.51 E-value=59 Score=37.08 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=19.2
Q ss_pred ecCCCCCCChhhhhhhhCCCCcCh
Q 038527 221 RDDDYNSKSLIGDHLRKNGDLKTV 244 (630)
Q Consensus 221 radDy~s~g~ig~~Lrk~gdLKTv 244 (630)
|-+||.+++.|-+-.++..|=|.+
T Consensus 278 rVWDYAGDnYVhRl~~~~~dGklv 301 (493)
T KOG0804|consen 278 RVWDYAGDNYVHRLPQSKTDGKLV 301 (493)
T ss_pred eeeecccchhhhhccccCCCCceE
Confidence 678999999999988888765543
No 64
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=81.97 E-value=1.2e+02 Score=36.01 Aligned_cols=39 Identities=31% Similarity=0.459 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhchhHHhhh-H---------HhHHHhhhhhHHHhhc
Q 038527 389 EKEKLRRKIIELQKGLDAKQAL-E---------LEIEQKRGTIQVMKHM 427 (630)
Q Consensus 389 EKe~~~~kil~LEkqLd~kQ~L-E---------LEi~qlkg~L~vmKh~ 427 (630)
+.+.--+.|-.||++|.++-.- | -....+|-.|.++|.|
T Consensus 311 e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 311 EREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHh
Confidence 3344445566666666554320 0 2344566677788888
No 65
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=81.67 E-value=1.1e+02 Score=35.38 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhH
Q 038527 323 HEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLH 359 (630)
Q Consensus 323 ~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~ 359 (630)
....+.+|+..+..|+.-..++..+....++=|..|+
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe 319 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELE 319 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555443
No 66
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=81.05 E-value=2e+02 Score=38.18 Aligned_cols=208 Identities=20% Similarity=0.269 Sum_probs=97.1
Q ss_pred hhhhhhhCCC-CcChhhHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHH-------------HHHHHHH
Q 038527 231 IGDHLRKNGD-LKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDL-------------TMEQMDE 296 (630)
Q Consensus 231 ig~~Lrk~gd-LKTv~ei~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r-------------~meEk~~ 296 (630)
|=.|||+--+ +-|--++..-+...-.+.|+.+-..|..-+..|...+.++..+..+++. +++-|..
T Consensus 1154 iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~ 1233 (1822)
T KOG4674|consen 1154 IVSFLRKEKEIAETKLDTLKRENARLKQQVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKV 1233 (1822)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHH
Confidence 4556665432 2344445555555566777777777777777777777777555555442 1111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHhhhh
Q 038527 297 MNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKAD 376 (630)
Q Consensus 297 l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~kad 376 (630)
|...-.-...++|. -++-++++-.+...|+..|....-++.....++.+++-.++. .|+.
T Consensus 1234 LRee~~~~~~k~qE-l~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~-------------------wK~R 1293 (1822)
T KOG4674|consen 1234 LREENEANLEKIQE-LRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDR-------------------WKQR 1293 (1822)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHH
Confidence 22111111111111 112222222222223333333333333333333332222221 1111
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhh
Q 038527 377 EKVWRLAQVHK----EEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEM 452 (630)
Q Consensus 377 e~vlkL~e~hk----rEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l 452 (630)
.-.|++.|+ -+=+.+..-|-.|+.+|..++.+--|+...-+.++ ..++++++++..+.+.+...+
T Consensus 1294 --~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q---------~~~k~qld~l~~e~~~lt~~~ 1362 (1822)
T KOG4674|consen 1294 --NQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ---------EKIKKQLDELNNEKANLTKEL 1362 (1822)
T ss_pred --HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 112333332 23344445666777777766665555544444444 235666666666666666666
Q ss_pred HHHHHhhHHHHHHHhhc
Q 038527 453 DVVEALNQSLIVRERKS 469 (630)
Q Consensus 453 ~~~e~~nq~L~~ker~s 469 (630)
..++++++.|-...+.-
T Consensus 1363 ~ql~~~~~rL~~~~~e~ 1379 (1822)
T KOG4674|consen 1363 EQLEDLKTRLAAALSEK 1379 (1822)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666665544433
No 67
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.86 E-value=1.5e+02 Score=36.41 Aligned_cols=47 Identities=6% Similarity=0.112 Sum_probs=28.7
Q ss_pred hhhhhhhCCCCcChhhHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHH
Q 038527 231 IGDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEME 277 (630)
Q Consensus 231 ig~~Lrk~gdLKTv~ei~~E~~rk~~~lv~~L~n~I~~kn~~l~elE 277 (630)
|-..+..+++.--...++.+.-.+-+.++..|++.|....-.++.+.
T Consensus 631 i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lk 677 (970)
T KOG0946|consen 631 IAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLK 677 (970)
T ss_pred HHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44455566666555666666666666677777777766655555443
No 68
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.83 E-value=1.6e+02 Score=36.69 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhhHHHHHhhHHHHH
Q 038527 440 AIIKEIKEKEGEMDVVEALNQSLIV 464 (630)
Q Consensus 440 ~l~~~l~ek~~~l~~~e~~nq~L~~ 464 (630)
+--..|+|.+.+|+.|+++|-.|+-
T Consensus 462 ekVklLeetv~dlEalee~~EQL~E 486 (1243)
T KOG0971|consen 462 EKVKLLEETVGDLEALEEMNEQLQE 486 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566667778888888777763
No 69
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.63 E-value=1.3e+02 Score=35.48 Aligned_cols=182 Identities=12% Similarity=0.072 Sum_probs=98.7
Q ss_pred cChHHHHhhHHHHHHHHhhccccCCCCCCCCCCccccccCCCCCCceeeccceEEEeccccccCCCCcccccC-hhhHHH
Q 038527 71 RGAREKAQHLALEKYVSKYLVVKDRSQLEPGTSSECLKITDHQPDQLLVYPWVGIVANIKTQRGEDGRYVGES-GSKLRD 149 (630)
Q Consensus 71 r~ak~ka~HlaLak~L~~dl~~~~~~~p~~~~~~~~~~~~~~~~dd~iVWPwmgII~Ni~~e~~~dg~~~G~s-~~~L~~ 149 (630)
|..+.++---.-+..++..|..++.+.|.... .++ .|..+|=..+.-|.---. +++-..+.. -.++-.
T Consensus 64 Rpl~dk~~~s~c~~~I~~fL~engf~~~iS~k-~l~---~PS~KdF~~iFkfLY~~L-------dp~y~f~~r~EeEV~~ 132 (581)
T KOG0995|consen 64 RPLSDKRYRSQCIRQIYNFLVENGFSHPISIK-LLM---KPSVKDFIAIFKFLYGFL-------DPDYEFPERIEEEVVQ 132 (581)
T ss_pred CCcccHHHHHHHHHHHHHHHHHcCCCCChhhh-hcC---CCccccHHHHHHHHHhcc-------CCCcccchhHHHHHHH
Confidence 66677777778888888888888776444311 011 133333222221111001 111101100 134445
Q ss_pred HHHhCCCCCcccc-cccCCCCCceeEEEEeCCChhhhHHHH-------HHHhhhhhcCCChhhhhhhcCCCccceeeeee
Q 038527 150 EFRSKGFNPLKVH-PLWSRRGHSGFAVVEFYKDWAGFKNAI-------MFEKSFEVDHHGKKDFYAVKNLGDKLYGWIAR 221 (630)
Q Consensus 150 ~~~~~GF~p~kv~-~l~g~~Gh~g~aVV~F~~dw~Gf~nA~-------~lek~Fe~~~~GKkdW~~~~~~~~~LYGWvAr 221 (630)
.|...||.-.-.+ .++...++ -+|.-+..|+ +++.+-...- .-|.+....+.-.|-|+
T Consensus 133 ilK~L~YPf~~siSs~~a~gsp---------H~WP~iL~mlhWlvdlI~~~t~~v~~~---~l~q~~~ed~~m~k~f~-- 198 (581)
T KOG0995|consen 133 ILKNLKYPFLLSISSLQAAGSP---------HNWPHILGMLHWLVDLIRINTALVEDS---PLEQEEAEDKTMNKLFF-- 198 (581)
T ss_pred HHHhCCCCcccchhhhccCCCC---------CccHHHHHHHHHHHHHHHHhHHHhhcc---chhccchHHHHHHHHHH--
Confidence 5777777653333 33333332 3477777665 3344333322 11322111011112222
Q ss_pred cCCCCCCChhhhhhhhCCCCcChhhHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhh
Q 038527 222 DDDYNSKSLIGDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLET 283 (630)
Q Consensus 222 adDy~s~g~ig~~Lrk~gdLKTv~ei~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~ 283 (630)
||-. ..++.|+++-.+ ++++..|-..+-.++...++++|+...+...+|+.++++.
T Consensus 199 --dy~~-~~Y~~fl~g~d~---~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ 254 (581)
T KOG0995|consen 199 --DYTI-RSYTSFLKGEDN---SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINER 254 (581)
T ss_pred --HHHH-HHHHHHhccCcc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 135677777766 8899999999999999999999999999999999999844
No 70
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=79.44 E-value=1.9e+02 Score=36.91 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcHHHH
Q 038527 305 IRKMQQSAHDHFQKIYLEHEKATSQLE---AQKMQLEEHEKQLQYREAKNETER 355 (630)
Q Consensus 305 ~~kmQ~~a~~~~~~i~~e~ekl~~eLe---~k~~eL~~r~k~L~~~~a~~~~er 355 (630)
+..|++.|++-+.+|-+++.-...-+. .+..+|+.+..+|.--.++|..+-
T Consensus 1589 a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A 1642 (1758)
T KOG0994|consen 1589 ADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEA 1642 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 334444555555544444433222222 234445555555544444444433
No 71
>PRK12704 phosphodiesterase; Provisional
Probab=78.49 E-value=1.1e+02 Score=35.37 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=15.4
Q ss_pred HhhccHHHHHHHHHHHHhhhc
Q 038527 466 ERKSNDELQEARKELINSLKE 486 (630)
Q Consensus 466 er~sndElq~ark~li~~l~~ 486 (630)
|+-++--.++||+.|++.+.+
T Consensus 145 ~~~a~lt~~ea~~~l~~~~~~ 165 (520)
T PRK12704 145 ERISGLTAEEAKEILLEKVEE 165 (520)
T ss_pred HHHhCCCHHHHHHHHHHHHHH
Confidence 566666777888888887763
No 72
>PTZ00121 MAEBL; Provisional
Probab=78.46 E-value=2.3e+02 Score=37.18 Aligned_cols=67 Identities=21% Similarity=0.308 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHH
Q 038527 291 MEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSE 361 (630)
Q Consensus 291 meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E 361 (630)
.+|-..|-+.-.+|.+..|..--+.+.+++.+-.+.+.+-..+..+-..+..+|-+ .+.+|+++++.
T Consensus 1572 aeE~k~~a~rkaee~~~~~~~~~~~~~~~~~~~~~~kae~~kk~ee~~kk~E~~kk----~eeekKk~Eel 1638 (2084)
T PTZ00121 1572 AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKK----AEEEKKKVEQL 1638 (2084)
T ss_pred HhhhhhhhhhhHHHHHhHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 33444555566666666666555666677776666665554444444444444433 23444444433
No 73
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=78.36 E-value=1.5e+02 Score=35.06 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=13.3
Q ss_pred hchhHHhhhHHhHHHhhhhhH
Q 038527 402 KGLDAKQALELEIEQKRGTIQ 422 (630)
Q Consensus 402 kqLd~kQ~LELEi~qlkg~L~ 422 (630)
|=|..--.|..||..|.|+|.
T Consensus 509 KIl~DTr~lQkeiN~l~gkL~ 529 (594)
T PF05667_consen 509 KILSDTRELQKEINSLTGKLD 529 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445556667777888775
No 74
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=78.06 E-value=6.2 Score=30.95 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=41.6
Q ss_pred EEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-cccccc-CCCCCceeEEEEeCCChhhhHHHHH
Q 038527 124 GIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLW-SRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 124 gII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~-g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
+.|-|+|.. .+..+|.+.|+. |.+. .+.... ....+.|+++|.|.+ ...-..|+.
T Consensus 1 l~v~nlp~~---------~t~~~l~~~f~~--~g~i~~~~~~~~~~~~~~~~a~V~F~~-~~~a~~a~~ 57 (70)
T PF00076_consen 1 LYVGNLPPD---------VTEEELRDFFSQ--FGKIESIKVMRNSSGKSKGYAFVEFES-EEDAEKALE 57 (70)
T ss_dssp EEEESETTT---------SSHHHHHHHHHT--TSTEEEEEEEEETTSSEEEEEEEEESS-HHHHHHHHH
T ss_pred cEEcCCCCc---------CCHHHHHHHHHH--hhhcccccccccccccccceEEEEEcC-HHHHHHHHH
Confidence 357777764 467899999999 9987 555555 355688999999987 677677766
No 75
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=78.05 E-value=88 Score=32.20 Aligned_cols=84 Identities=18% Similarity=0.256 Sum_probs=59.1
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 255 TSTLVTNLTRTLEVKDMRYKEMEMKYLET---STYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLE 331 (630)
Q Consensus 255 ~~~lv~~L~n~I~~kn~~l~elE~k~~e~---~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe 331 (630)
.+..+..+.+.+..+.....++-.+|.+. ...+.++|++-++.+...-+|-.+-...+...+++|..+.+.+..+|.
T Consensus 7 ~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~ 86 (207)
T PF05010_consen 7 LDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLN 86 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHH
Confidence 44556666666555555555555555543 567778888888888777777777777788888999999999988888
Q ss_pred HHHHHHH
Q 038527 332 AQKMQLE 338 (630)
Q Consensus 332 ~k~~eL~ 338 (630)
|.-...-
T Consensus 87 s~E~sfs 93 (207)
T PF05010_consen 87 SLEKSFS 93 (207)
T ss_pred HHHhhHH
Confidence 7644443
No 76
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=77.89 E-value=56 Score=39.56 Aligned_cols=80 Identities=16% Similarity=0.231 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHH
Q 038527 315 HFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLR 394 (630)
Q Consensus 315 ~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~ 394 (630)
.+.+++.+.+..+.+++.+..+++....+++++...-+..+.+|++++++ ...+|.+.+-.++++-+++-+.++
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~------~~~~~~~~a~~~l~~a~~~~~~~i 590 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDK------LLEEAEKEAQQAIKEAKKEADEII 590 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666666666666655555555555555544444 234445555567777777777777
Q ss_pred HHHHHH
Q 038527 395 RKIIEL 400 (630)
Q Consensus 395 ~kil~L 400 (630)
+++-++
T Consensus 591 ~~lk~~ 596 (782)
T PRK00409 591 KELRQL 596 (782)
T ss_pred HHHHHh
Confidence 766654
No 77
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=77.38 E-value=4.6 Score=32.43 Aligned_cols=58 Identities=29% Similarity=0.439 Sum_probs=42.1
Q ss_pred EEEeccccccCCCCcccccChhhHHHHHHhCCCCC-cccccccCCCC-CceeEEEEeCCChhhhHHHHHHHh
Q 038527 124 GIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNP-LKVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIMFEK 193 (630)
Q Consensus 124 gII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p-~kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~lek 193 (630)
+.|-|+|.. .+...|.+.|+. |.+ ..++...++.| .+|+|+|.|. +-.....|+.+.+
T Consensus 1 v~i~nlp~~---------~~~~~l~~~f~~--~g~v~~v~~~~~~~~~~~~~a~v~f~-~~~~a~~al~~~~ 60 (70)
T PF14259_consen 1 VYISNLPPS---------TTEEDLRNFFSR--FGPVEKVRLIKNKDGQSRGFAFVEFS-SEEDAKRALELLN 60 (70)
T ss_dssp EEEESSTTT-----------HHHHHHHCTT--SSBEEEEEEEESTTSSEEEEEEEEES-SHHHHHHHHHHHT
T ss_pred CEEeCCCCC---------CCHHHHHHHHHh--cCCcceEEEEeeeccccCCEEEEEeC-CHHHHHHHHHHCC
Confidence 457788764 366889999998 654 57777777654 4799999995 6777777877765
No 78
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=77.31 E-value=1.5e+02 Score=36.75 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=15.6
Q ss_pred hhhccCCceEE--e-cCC--eeeccCCCCCCcc
Q 038527 24 NQLKKGDLKVE--V-SET--AYRCPFCRGKKET 51 (630)
Q Consensus 24 ~~Lk~g~~kVk--~-~~~--~~~CP~C~~kkK~ 51 (630)
..|.+|+.-|. + ++. ++.|.||.=.-|+
T Consensus 792 d~l~~GYrhv~LRse~Nqpl~lp~Lfv~i~~kd 824 (1189)
T KOG1265|consen 792 DGLNAGYRHVCLRSESNQPLTLPALFVYIVLKD 824 (1189)
T ss_pred hcccCcceeEEecCCCCCccccceeEEEEEeec
Confidence 46778876665 2 222 4566677544443
No 79
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=77.21 E-value=58 Score=29.70 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=16.6
Q ss_pred hchhHHhhhHHhHHHhhhhhHHHhh
Q 038527 402 KGLDAKQALELEIEQKRGTIQVMKH 426 (630)
Q Consensus 402 kqLd~kQ~LELEi~qlkg~L~vmKh 426 (630)
.+-..++..+.||.+|+..|..|+.
T Consensus 71 ~e~k~~~~k~~ei~~l~~~l~~l~~ 95 (126)
T PF13863_consen 71 EEKKKKEEKEAEIKKLKAELEELKS 95 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777778777776665
No 80
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=77.17 E-value=1.4e+02 Score=34.08 Aligned_cols=152 Identities=19% Similarity=0.208 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 038527 261 NLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRN--EEIRKMQQSAHDHFQKIYLEHEKATSQ--------- 329 (630)
Q Consensus 261 ~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yn--eE~~kmQ~~a~~~~~~i~~e~ekl~~e--------- 329 (630)
.+..++..-.+.+++|+---+.+..--.++|.|+-+|...|+ ||+++=|..-... +|.+ -++...|
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE--~l~E-e~rrhrEil~k~eRea 295 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEE--SLSE-EERRHREILIKKEREA 295 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHH--HHHH-HHHHHHHHHHHHHHHH
Confidence 345566667777788887777777777788888888877776 5666555442111 1111 1111111
Q ss_pred ------HHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHh-------HhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 038527 330 ------LEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMN-------ERATLEQKKADEKVWRLAQVHKEEKEKLRRK 396 (630)
Q Consensus 330 ------Le~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn-------~lA~~EQ~kade~vlkL~e~hkrEKe~~~~k 396 (630)
|+.+.+.|+.-.-+|..+.|....---+|+.+.++. .+.-...|+-...+.--.-.+.++|+++..=
T Consensus 296 sle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqEL 375 (502)
T KOG0982|consen 296 SLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQEL 375 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 222334444444455555555555555666665543 2333333444444444444477788888888
Q ss_pred HHHHHhchhHHhhhHHhHH
Q 038527 397 IIELQKGLDAKQALELEIE 415 (630)
Q Consensus 397 il~LEkqLd~kQ~LELEi~ 415 (630)
|.+|-++|.--|.+-+..+
T Consensus 376 ieelrkelehlr~~kl~~a 394 (502)
T KOG0982|consen 376 IEELRKELEHLRRRKLVLA 394 (502)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 8887777766555444433
No 81
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=77.03 E-value=1.5e+02 Score=34.32 Aligned_cols=213 Identities=20% Similarity=0.219 Sum_probs=108.7
Q ss_pred hhhHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHH---HHHHHH-HHHH---HHHHHHHHHHHHHHHHHH
Q 038527 244 VSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLD---LTMEQM-DEMN---KSRNEEIRKMQQSAHDHF 316 (630)
Q Consensus 244 v~ei~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~---r~meEk-~~l~---~~yneE~~kmQ~~a~~~~ 316 (630)
++..++|-.+--++++..+.++|+.+......|+.++.+. +++. ++++++ +.|. ..|.-=+..|.+..+...
T Consensus 251 ~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea-~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~ 329 (622)
T COG5185 251 YEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEA-MKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWP 329 (622)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 3445677777889999999999999999999998888765 2222 223333 1111 122223444555555443
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH------HHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHH
Q 038527 317 QK---IYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNE------TERKKLHSEKIMNERATLEQKKADEKVWRLAQVHK 387 (630)
Q Consensus 317 ~~---i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~------~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hk 387 (630)
-. .-.+.+....||++-....+.-.+|+.+....++ +||.+|..|..+. . -.-+.+.+-|-+++
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i-----~--~~~~~L~k~V~~~~ 402 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKI-----N--IQSDKLTKSVKSRK 402 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHh-----c--chHHHHHHHHHhHH
Confidence 32 2233333344444444444444455554433332 2344443333332 1 12255677777777
Q ss_pred HHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc-------------ccccHHHHHHHHHHHHHHHHHHhhhHH
Q 038527 388 EEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHM-------------REENVEVQEKMDAIIKEIKEKEGEMDV 454 (630)
Q Consensus 388 rEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~-------------~~~d~~~~~k~~~l~~~l~ek~~~l~~ 454 (630)
+|-++.-+ .|||-+-.=--|--+|.....+ .-|- +.-.+.+..+|..+..+|.+++...
T Consensus 403 leaq~~~~---slek~~~~~~sl~~~i~~~~~~---i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~-- 474 (622)
T COG5185 403 LEAQGIFK---SLEKTLRQYDSLIQNITRSRSQ---IGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQER-- 474 (622)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHhcccHHH---HhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHH--
Confidence 76655544 4444443333333344333211 1111 1123446666777776666665443
Q ss_pred HHHhhHHHHHHHhhccHHHHHHHHHH
Q 038527 455 VEALNQSLIVRERKSNDELQEARKEL 480 (630)
Q Consensus 455 ~e~~nq~L~~ker~sndElq~ark~l 480 (630)
+.-|-.-+--||++++.+
T Consensus 475 --------~~~e~nksi~Lee~i~~~ 492 (622)
T COG5185 475 --------IKTEENKSITLEEDIKNL 492 (622)
T ss_pred --------HHHHhccceeHHHHhhhH
Confidence 333444444577777753
No 82
>smart00030 CLb CLUSTERIN Beta chain.
Probab=76.87 E-value=13 Score=37.89 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=42.3
Q ss_pred HhhHHHHHHh-----HhhhHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhh
Q 038527 356 KKLHSEKIMN-----ERATLEQKKAD--EKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQAL 410 (630)
Q Consensus 356 ~kl~~E~~kn-----~lA~~EQ~kad--e~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~L 410 (630)
+-+..|+++. +|.++..+... .++|+-.|+-|++||+|++...+.|++|.++|.+
T Consensus 18 kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~e~e~kL~E~~~v 79 (206)
T smart00030 18 KYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTRESEEKLKESQGV 79 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566665 66666554433 6789999999999999999999999999888865
No 83
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=76.77 E-value=60 Score=39.26 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 317 QKIYLEHEKATSQLEAQKMQLEEHEKQLQYRE 348 (630)
Q Consensus 317 ~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~ 348 (630)
.+++.+-+..+.+++.++.+++....++++..
T Consensus 514 ~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~ 545 (771)
T TIGR01069 514 NVLIEKLSALEKELEQKNEHLEKLLKEQEKLK 545 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444333
No 84
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=75.49 E-value=1.8e+02 Score=34.55 Aligned_cols=47 Identities=23% Similarity=0.312 Sum_probs=23.6
Q ss_pred hHHhHHHhhhhhHHHhhcccc----cHHHHHHHHHHHHHHHHHHhhhHHHH
Q 038527 410 LELEIEQKRGTIQVMKHMREE----NVEVQEKMDAIIKEIKEKEGEMDVVE 456 (630)
Q Consensus 410 LELEi~qlkg~L~vmKh~~~~----d~~~~~k~~~l~~~l~ek~~~l~~~e 456 (630)
|--+.-+|..+|+--.|++.+ =.++..++..+.+.|+.|..++..+.
T Consensus 179 ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq 229 (617)
T PF15070_consen 179 LTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQ 229 (617)
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 333344455555555554211 11344555666666666666665543
No 85
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=74.73 E-value=2.1e+02 Score=35.01 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 309 QQSAHDHFQKIYLEHEKATSQLEAQKM 335 (630)
Q Consensus 309 Q~~a~~~~~~i~~e~ekl~~eLe~k~~ 335 (630)
|..+..++.+.+...++|-..|+++.+
T Consensus 891 q~~~~~~~d~~~~~~e~~~~~l~sk~~ 917 (1259)
T KOG0163|consen 891 QREMNSEYDVAVKNYEKLVKRLDSKEQ 917 (1259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 333444455555555555555555433
No 86
>PHA02562 46 endonuclease subunit; Provisional
Probab=74.37 E-value=1.6e+02 Score=33.38 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhH
Q 038527 388 EEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQ 422 (630)
Q Consensus 388 rEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~ 422 (630)
.+.+.+...|.+++......+.+.-.+..++..+.
T Consensus 313 ~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~ 347 (562)
T PHA02562 313 HSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKIS 347 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555454444444444444444444433
No 87
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.58 E-value=2.5e+02 Score=35.26 Aligned_cols=91 Identities=11% Similarity=0.070 Sum_probs=54.3
Q ss_pred eCCChhhhHHHHHHHhhhhhcCCChhhhhhhcCCCccceeeeeecCCCCCCChhhhhhhhCCCCcChhhHHHhhhhhhh-
Q 038527 178 FYKDWAGFKNAIMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKSLIGDHLRKNGDLKTVSGKEAEDQRKTS- 256 (630)
Q Consensus 178 F~~dw~Gf~nA~~lek~Fe~~~~GKkdW~~~~~~~~~LYGWvAradDy~s~g~ig~~Lrk~gdLKTv~ei~~E~~rk~~- 256 (630)
|+.+..-=.+-..|-.+|..| -+-|.-|++. +-|++|- .|.+|+=++..+.--..
T Consensus 119 iN~~a~t~s~i~elv~~fNIQ-------------i~NLCqFLpQ-------DkV~EFa----~L~pi~LL~eTekAig~~ 174 (1072)
T KOG0979|consen 119 INDSATTKSEIEELVAHFNIQ-------------IDNLCQFLPQ-------DKVKEFA----RLSPIELLVETEKAIGAE 174 (1072)
T ss_pred eccchhhhHHHHHHHHHHhcc-------------cCchhhhccH-------HHHHHHH----cCChHHHHHHHHHhcCch
Confidence 344444455666677777754 2345555532 3477774 57777777665555333
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q 038527 257 TLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQ 293 (630)
Q Consensus 257 ~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meE 293 (630)
.|+.++ ..+.......+.||.+|+..+..|.++-.+
T Consensus 175 ~ll~~h-~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~ 210 (1072)
T KOG0979|consen 175 ELLQYH-IELMDLREDEKSLEDKLTTKTEKLNRLEDE 210 (1072)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344444 355566677777777777777777766644
No 88
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=73.09 E-value=1.4e+02 Score=34.94 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHH
Q 038527 315 HFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIM 364 (630)
Q Consensus 315 ~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~k 364 (630)
+++.|..+++.+...=+.+..+-+.|-.-=+++.++-+..|++.+++.++
T Consensus 198 el~~i~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~ 247 (591)
T KOG2412|consen 198 ELQAIQREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAEL 247 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888765443333332222222222233444444555555544433
No 89
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=73.02 E-value=2.5e+02 Score=35.03 Aligned_cols=49 Identities=27% Similarity=0.281 Sum_probs=28.6
Q ss_pred HHHHhhhHHHHHhhHHHHH-HH--hhccHHHHHHHHHHHHhhhccCCcccccee
Q 038527 446 KEKEGEMDVVEALNQSLIV-RE--RKSNDELQEARKELINSLKEGRTRATIGVK 496 (630)
Q Consensus 446 ~ek~~~l~~~e~~nq~L~~-ke--r~sndElq~ark~li~~l~~~~~~~~IgiK 496 (630)
......++.+-+..||++. +| +.-||.||+-+.+-...-.+ ...+|||+
T Consensus 511 ~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Sseee--s~q~~s~~ 562 (1243)
T KOG0971|consen 511 KRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESSEEE--SQQPPSVD 562 (1243)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH--hcCCCCCc
Confidence 4455666666777787654 23 34567777777654433322 34467877
No 90
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=72.38 E-value=2.5e+02 Score=34.68 Aligned_cols=142 Identities=16% Similarity=0.212 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHH
Q 038527 284 STYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQL-EAQKMQLEEHEKQLQYREAKNETERKKLHSEK 362 (630)
Q Consensus 284 ~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eL-e~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~ 362 (630)
+..|.+-..+++.+...-++|+...+|.-..--++|-+...=|..+- +-+.+.++.||.-|+.+..-..-+-+.-+-||
T Consensus 279 ns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~~eLEK 358 (1265)
T KOG0976|consen 279 NSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEK 358 (1265)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 44555556677888888888888888876555555544443332221 11244566777766654333333333333333
Q ss_pred HHh----HhhhHHHhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHh
Q 038527 363 IMN----ERATLEQKKADE-----KVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMK 425 (630)
Q Consensus 363 ~kn----~lA~~EQ~kade-----~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmK 425 (630)
+.. ..-++.|.+..+ .++.|..+...+.+.+-++|..||.--..-...--|.++-..+|..|+
T Consensus 359 krd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mg 430 (1265)
T KOG0976|consen 359 KRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMG 430 (1265)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHh
Confidence 332 223344444331 234455555567777777777777663333333334444444555444
No 91
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=72.35 E-value=2.2e+02 Score=34.91 Aligned_cols=11 Identities=27% Similarity=0.489 Sum_probs=6.0
Q ss_pred cceeeeeecCC
Q 038527 214 KLYGWIARDDD 224 (630)
Q Consensus 214 ~LYGWvAradD 224 (630)
..-||++|.--
T Consensus 822 ~~Rg~L~rkr~ 832 (1259)
T KOG0163|consen 822 IARGYLARKRH 832 (1259)
T ss_pred HHHHHHHHhhh
Confidence 34466666543
No 92
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=71.54 E-value=2.4e+02 Score=34.28 Aligned_cols=57 Identities=25% Similarity=0.377 Sum_probs=29.9
Q ss_pred HHHHHHHhchhHHhhhHHhHHHhhhhhHHHhh---c--ccccHHHHHHHHHHHHHHHHHHhh
Q 038527 395 RKIIELQKGLDAKQALELEIEQKRGTIQVMKH---M--REENVEVQEKMDAIIKEIKEKEGE 451 (630)
Q Consensus 395 ~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh---~--~~~d~~~~~k~~~l~~~l~ek~~~ 451 (630)
.||-.|++|..++=.==+---.||++.+-+|- . .--|.+.+.||+.|+.+++.++.+
T Consensus 649 ~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~ 710 (762)
T PLN03229 649 EKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAE 710 (762)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 45555555554433322233345555544444 2 233666777777777777666543
No 93
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=71.48 E-value=1.5e+02 Score=31.79 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=12.2
Q ss_pred HHHHHHHHHhchhHHhhhHHhHHHhh
Q 038527 393 LRRKIIELQKGLDAKQALELEIEQKR 418 (630)
Q Consensus 393 ~~~kil~LEkqLd~kQ~LELEi~qlk 418 (630)
+..++.-||-+||.||-|=-++|+|+
T Consensus 145 AIErnAfLESELdEke~llesvqRLk 170 (333)
T KOG1853|consen 145 AIERNAFLESELDEKEVLLESVQRLK 170 (333)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444445555555554444444443
No 94
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=71.07 E-value=1.3e+02 Score=30.93 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHH
Q 038527 257 TLVTNLTRTLEVKDMRYKEMEMKYLETSTYLD 288 (630)
Q Consensus 257 ~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~ 288 (630)
.-|+.|.+.|.-....|...+..+..++.+|.
T Consensus 36 ~e~~~l~rri~~lE~~le~~eerL~~~~~kL~ 67 (237)
T PF00261_consen 36 AEVASLQRRIQLLEEELERAEERLEEATEKLE 67 (237)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444
No 95
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=71.02 E-value=1.2e+02 Score=32.48 Aligned_cols=160 Identities=18% Similarity=0.249 Sum_probs=99.1
Q ss_pred hhhhhcCCChhhhhhhcCCCccceeeeeecCCC---CCCChhhhhhhhCCCCcChhhHHHhhhhhhhhHHHHHHHHHHHH
Q 038527 193 KSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDY---NSKSLIGDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVK 269 (630)
Q Consensus 193 k~Fe~~~~GKkdW~~~~~~~~~LYGWvAradDy---~s~g~ig~~Lrk~gdLKTv~ei~~E~~rk~~~lv~~L~n~I~~k 269 (630)
+-|.++|+.=++-... .+.||.-+..++.- ++.-.+. .-.+.+|||.+..+..+-...--.|.+-|...++.+
T Consensus 72 kLY~ADGyAVkELLKi---a~lLy~A~~~~~~~e~~~~~~~~~-l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr 147 (267)
T PF10234_consen 72 KLYQADGYAVKELLKI---ASLLYSAMKSAPSDEEDDSLFKFD-LSSKIQDLKAARQLASEITQRGASLYDLLGKEVELR 147 (267)
T ss_pred HHHHhhHHHHHHHHHH---HHHHHHHHhCCCccccccchhhcc-cchhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHH
Confidence 3444444444444332 24566555555221 1212232 225678999999999988888888999998888777
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038527 270 DMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREA 349 (630)
Q Consensus 270 n~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a 349 (630)
......+-.-.. + .+-++..++--..+...-+..+..+..+-.+-..|...++.++.|||+-.|.|.-+++
T Consensus 148 ~~R~~a~~r~~e-----~----~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~ 218 (267)
T PF10234_consen 148 EERQRALARPLE-----L----NEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS 218 (267)
T ss_pred HHHHHHHcCCcC-----H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 766665531111 1 1122222222223333333345556667778888999999999999999999999888
Q ss_pred hcHH---HHHhhHHHHHHh
Q 038527 350 KNET---ERKKLHSEKIMN 365 (630)
Q Consensus 350 ~~~~---er~kl~~E~~kn 365 (630)
--+. |-.+|+.|.++-
T Consensus 219 vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 219 VRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred cChHHHHHHHHHHHHHHHH
Confidence 7773 666777776664
No 96
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=70.90 E-value=2e+02 Score=34.51 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=19.0
Q ss_pred hhHHhhhHHhHHHhhhhhHHHhhc
Q 038527 404 LDAKQALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 404 Ld~kQ~LELEi~qlkg~L~vmKh~ 427 (630)
..+..+|--+|++|+|.+.|-...
T Consensus 299 ~~~r~kL~N~i~eLkGnIRV~CRv 322 (670)
T KOG0239|consen 299 KEERRKLHNEILELKGNIRVFCRV 322 (670)
T ss_pred HHHHHHHHHHHHHhhcCceEEEEe
Confidence 344557778889999999998876
No 97
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=70.81 E-value=2.9 Score=26.63 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=14.7
Q ss_pred eeccCCCCCCccccchHHHHhhhh
Q 038527 40 YRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 40 ~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
|.||+|+.. +....+|.+|-.
T Consensus 1 ~~C~~C~~~---~~~~~~l~~H~~ 21 (24)
T PF13894_consen 1 FQCPICGKS---FRSKSELRQHMR 21 (24)
T ss_dssp EE-SSTS-E---ESSHHHHHHHHH
T ss_pred CCCcCCCCc---CCcHHHHHHHHH
Confidence 789999755 667888888843
No 98
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=70.78 E-value=1.3e+02 Score=30.91 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhhcHHHHHhhHHHHHH
Q 038527 336 QLEEHEKQLQYREAKNETERKKLHSEKIM 364 (630)
Q Consensus 336 eL~~r~k~L~~~~a~~~~er~kl~~E~~k 364 (630)
.|+.=..+++........+-..|.....+
T Consensus 144 kL~~ANeei~~v~~~~~~e~~aLqa~lkk 172 (207)
T PF05010_consen 144 KLEKANEEIAQVRSKHQAELLALQASLKK 172 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 99
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=70.60 E-value=1.3e+02 Score=30.60 Aligned_cols=102 Identities=25% Similarity=0.307 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 256 STLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKM 335 (630)
Q Consensus 256 ~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~ 335 (630)
.++++...+.|.+-...|..+...+..+.-+|+ +.+.-+..-+.++..+++.+.+ +-+.+-++|...|+.-..
T Consensus 60 pqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk----~~~~el~k~~~~l~~L~~L~~d---knL~eReeL~~kL~~~~~ 132 (194)
T PF15619_consen 60 PQLLQRHNEEVRVLRERLRKSQEQERELERKLK----DKDEELLKTKDELKHLKKLSED---KNLAEREELQRKLSQLEQ 132 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHc---CCchhHHHHHHHHHHHHH
Confidence 455555666666666555555555555544444 3333333344455555554332 123344555555555444
Q ss_pred HHHHHHHHHHH----HHhhcHHHHHhhHHHHHH
Q 038527 336 QLEEHEKQLQY----REAKNETERKKLHSEKIM 364 (630)
Q Consensus 336 eL~~r~k~L~~----~~a~~~~er~kl~~E~~k 364 (630)
+|+...+.+.. ++..+.+-++.|..|..+
T Consensus 133 ~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK 165 (194)
T PF15619_consen 133 KLQEKEKKIQELEKQLELENKSFRRQLASEKKK 165 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444444432 233333444444444444
No 100
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=70.22 E-value=2.6e+02 Score=34.14 Aligned_cols=97 Identities=27% Similarity=0.297 Sum_probs=65.7
Q ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 252 QRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLE 331 (630)
Q Consensus 252 ~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe 331 (630)
=.+...=|..|+.+++..-..--.+|.+..-.---|..-|. +|+.+..|--+++ ++-+-++-.+.++.+.+||
T Consensus 19 wekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~---qlr~~ree~eq~i----~~~~~~~s~e~e~~~~~le 91 (769)
T PF05911_consen 19 WEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMR---QLRQVREEQEQKI----HEAVAKKSKEWEKIKSELE 91 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHH---HHHHhhHHHHHHH----HHHHHHHhHHHHHHHHHHH
Confidence 34777888999999988877777777777666666665554 3444443433333 4556667778889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHhh
Q 038527 332 AQKMQLEEHEKQLQYREAKNETERKKL 358 (630)
Q Consensus 332 ~k~~eL~~r~k~L~~~~a~~~~er~kl 358 (630)
.++-++. ++|....+.|..-.+-|
T Consensus 92 ~~l~e~~---~~l~~~~~e~~~l~~~l 115 (769)
T PF05911_consen 92 AKLAELS---KRLAESAAENSALSKAL 115 (769)
T ss_pred HHHHHHH---HHHHHHHhhhHHHHHHH
Confidence 8877775 46777777776555444
No 101
>PRK00106 hypothetical protein; Provisional
Probab=69.80 E-value=2.3e+02 Score=33.22 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=31.0
Q ss_pred HhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhh----hHHhHHHhhh
Q 038527 366 ERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQA----LELEIEQKRG 419 (630)
Q Consensus 366 ~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~----LELEi~qlkg 419 (630)
..|.+-+..|.+-+++-+++.-+.--+.+-+-.+-|-+..+.++ +-.-||+.-+
T Consensus 161 ~~a~lt~~eak~~l~~~~~~~~~~~~~~~i~~~e~~a~~~a~~~a~~ii~~aiqr~a~ 218 (535)
T PRK00106 161 RVAALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSDKMAKDLLAQAMQRLAG 218 (535)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56777778888888888887654333333333333333344443 5566666553
No 102
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.52 E-value=1.7e+02 Score=31.74 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=13.7
Q ss_pred HHhhhHHhHHHhhhhhHHHhhc
Q 038527 406 AKQALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 406 ~kQ~LELEi~qlkg~L~vmKh~ 427 (630)
.++.++-+|+.+...++--++.
T Consensus 247 ~k~e~~~~I~~ae~~~~~~r~~ 268 (312)
T smart00787 247 KKSELNTEIAEAEKKLEQCRGF 268 (312)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC
Confidence 3556666666666666666665
No 103
>PRK01156 chromosome segregation protein; Provisional
Probab=69.06 E-value=2.7e+02 Score=33.83 Aligned_cols=16 Identities=19% Similarity=0.233 Sum_probs=7.0
Q ss_pred CCcccccChhhHHHHH
Q 038527 136 DGRYVGESGSKLRDEF 151 (630)
Q Consensus 136 dg~~~G~s~~~L~~~~ 151 (630)
||.++..+...+.+.+
T Consensus 102 ~g~~~~~~~~~~~~~i 117 (895)
T PRK01156 102 DGSIIAEGFDDTTKYI 117 (895)
T ss_pred CCeeccccHHHHHHHH
Confidence 4444443434444444
No 104
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.89 E-value=2.9e+02 Score=34.02 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 038527 434 VQEKMDAIIKEIKEKEGEM 452 (630)
Q Consensus 434 ~~~k~~~l~~~l~ek~~~l 452 (630)
|+.++++|+.|.+.|..++
T Consensus 547 ikdqldelskE~esk~~ei 565 (1118)
T KOG1029|consen 547 IKDQLDELSKETESKLNEI 565 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4455666766666665555
No 105
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=68.88 E-value=1.5e+02 Score=30.66 Aligned_cols=152 Identities=15% Similarity=0.242 Sum_probs=77.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cHHHHH
Q 038527 278 MKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAK-NETERK 356 (630)
Q Consensus 278 ~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~-~~~er~ 356 (630)
.+......+++.+...-..|+....+|.....+.-......+..+...|...++..+..-..|...|-++-.. .-.-..
T Consensus 85 ~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~ 164 (247)
T PF06705_consen 85 EKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQE 164 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555677777777777776666666666677777777777776655555554444321110 001112
Q ss_pred hhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc-ccccHHHH
Q 038527 357 KLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHM-REENVEVQ 435 (630)
Q Consensus 357 kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~-~~~d~~~~ 435 (630)
+++.|+...+.+ +..- ...+-.+.....+.-+..++.+++ ||..|++-|.+...- ...|.+|.
T Consensus 165 ~i~~Ek~~Re~~-~~~l--~~~le~~~~~~~~~~e~f~~~v~~-------------Ei~~lk~~l~~e~~~R~~~Dd~Iv 228 (247)
T PF06705_consen 165 KIEKEKNTRESK-LSEL--RSELEEVKRRREKGDEQFQNFVLE-------------EIAALKNALALESQEREQSDDDIV 228 (247)
T ss_pred HHHHHHHHHHHH-HHHH--HHHHHHHHHHHhhhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhhhHHH
Confidence 222222211000 0000 011222222333444555555554 777788888777776 55666666
Q ss_pred HHHHHHHHHH
Q 038527 436 EKMDAIIKEI 445 (630)
Q Consensus 436 ~k~~~l~~~l 445 (630)
.-|......|
T Consensus 229 ~aln~yt~~l 238 (247)
T PF06705_consen 229 QALNHYTKAL 238 (247)
T ss_pred HHHHHHHHHH
Confidence 6665555444
No 106
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=68.38 E-value=3e+02 Score=34.06 Aligned_cols=92 Identities=22% Similarity=0.224 Sum_probs=60.2
Q ss_pred HHHHHHHhhhHHHHHHHhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHH-------HHH---------HHHHHHHH
Q 038527 263 TRTLEVKDMRYKEMEMKYLETSTYLDLTM-------EQMDEMNKSRNEEIRKM-------QQS---------AHDHFQKI 319 (630)
Q Consensus 263 ~n~I~~kn~~l~elE~k~~e~~~sL~r~m-------eEk~~l~~~yneE~~km-------Q~~---------a~~~~~~i 319 (630)
..+|+.|.+.+.+||-+....+--...+. |.+.+||-...+|+.+. .+. .-+|.+..
T Consensus 921 icl~eeKDqei~EleailekQNca~eeakqn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~kef 1000 (1424)
T KOG4572|consen 921 ICLIEEKDQEIEELEAILEKQNCAHEEAKQNDEISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKEF 1000 (1424)
T ss_pred HHHHhhhhHHHHHHHHHHHhhhhhHHHHhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45678888888888877766554444332 45566665555544332 222 34566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 038527 320 YLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETE 354 (630)
Q Consensus 320 ~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~e 354 (630)
--++--++++||++.++|+.--.|+++++|.--.+
T Consensus 1001 E~~mrdhrselEe~kKe~eaiineiee~eaeIiQe 1035 (1424)
T KOG4572|consen 1001 EIEMRDHRSELEEKKKELEAIINEIEELEAEIIQE 1035 (1424)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66777788999999999988888888777655443
No 107
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.49 E-value=3.4e+02 Score=34.36 Aligned_cols=73 Identities=21% Similarity=0.329 Sum_probs=43.8
Q ss_pred HhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHH
Q 038527 407 KQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELIN 482 (630)
Q Consensus 407 kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~ 482 (630)
.+.||-.|.+|++.+ +.- ...-..+.-+|.+++..+.+...+++.++...-.+.-+.-.-|+||++.+..|-.
T Consensus 404 ~~elE~r~k~l~~sv--er~-~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~d 476 (1141)
T KOG0018|consen 404 RAELEARIKQLKESV--ERL-DKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLD 476 (1141)
T ss_pred HHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHh
Confidence 445555566665555 111 1112234556667777777777777777777777766677777777776665543
No 108
>PRK12705 hypothetical protein; Provisional
Probab=66.33 E-value=2.6e+02 Score=32.56 Aligned_cols=69 Identities=28% Similarity=0.297 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHh-----HhhhHHHhhhhHHHHHHHHHHH-HHHHHHHHHH
Q 038527 329 QLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMN-----ERATLEQKKADEKVWRLAQVHK-EEKEKLRRKI 397 (630)
Q Consensus 329 eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn-----~lA~~EQ~kade~vlkL~e~hk-rEKe~~~~ki 397 (630)
+|+.+...|+.+..+|++....-......|....++. ..|.+-+..|.+-+++-+++.- .|.-.+.+++
T Consensus 92 ~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~i~~~ 166 (508)
T PRK12705 92 QLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKI 166 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544433332223232221111 6777888888888998888665 3444444333
No 109
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=66.33 E-value=2.6e+02 Score=32.56 Aligned_cols=79 Identities=24% Similarity=0.199 Sum_probs=36.8
Q ss_pred HhhhHHhHHHhhhhhHHHhhc--cc---ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHH
Q 038527 407 KQALELEIEQKRGTIQVMKHM--RE---ENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELI 481 (630)
Q Consensus 407 kQ~LELEi~qlkg~L~vmKh~--~~---~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li 481 (630)
-..+.-+|++|...|+- .-+ +. +=.++...++.|.++..+-.+....++.+-|- .-+=|.+++++..+-++.-
T Consensus 450 ~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-~nRfr~~~~~V~~~f~~Ae 527 (569)
T PRK04778 450 FFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-ANRYRSDNEEVAEALNEAE 527 (569)
T ss_pred HHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCCCCHHHHHHHHHHH
Confidence 33445555555555543 222 00 11123344444444444444444444444333 3344456666666666665
Q ss_pred Hhhhcc
Q 038527 482 NSLKEG 487 (630)
Q Consensus 482 ~~l~~~ 487 (630)
.-|+++
T Consensus 528 ~lF~~~ 533 (569)
T PRK04778 528 RLFREY 533 (569)
T ss_pred HHHHhC
Confidence 555543
No 110
>PRK12704 phosphodiesterase; Provisional
Probab=66.30 E-value=2.6e+02 Score=32.51 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=30.8
Q ss_pred HhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhh----hHHhHHHhhh
Q 038527 366 ERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQA----LELEIEQKRG 419 (630)
Q Consensus 366 ~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~----LELEi~qlkg 419 (630)
..|.|-+..|.+-+++-+++.-+.--..+=+-.+-|-+..+.++ |-.-||+.-+
T Consensus 146 ~~a~lt~~ea~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~a~qr~a~ 203 (520)
T PRK12704 146 RISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILAQAIQRCAA 203 (520)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 67777788888888888887654333332222333333333333 5556666553
No 111
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=66.21 E-value=2.6e+02 Score=32.48 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=11.9
Q ss_pred CCCChHHHHHHHhcCCC
Q 038527 500 EIDNRPFLAAAKAKFPA 516 (630)
Q Consensus 500 eld~~~f~~ac~~k~~~ 516 (630)
.|...||-.-|.+.+..
T Consensus 387 ~l~~S~~~~Ir~r~~~~ 403 (489)
T PF05262_consen 387 TLKRSPVNGIRGRTFYE 403 (489)
T ss_pred eecccccceeccceeEE
Confidence 45667788888887743
No 112
>smart00362 RRM_2 RNA recognition motif.
Probab=65.98 E-value=13 Score=28.18 Aligned_cols=47 Identities=28% Similarity=0.443 Sum_probs=33.7
Q ss_pred EEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCC
Q 038527 124 GIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKD 181 (630)
Q Consensus 124 gII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~d 181 (630)
++|-|+|.. .+..+|.+.|.. |.+. .+....++..++|++.|.|...
T Consensus 2 v~i~~l~~~---------~~~~~l~~~~~~--~g~v~~~~~~~~~~~~~~~~~v~f~~~ 49 (72)
T smart00362 2 LFVGNLPPD---------VTEEDLKELFSK--FGPIESVKIPKDTGKSKGFAFVEFESE 49 (72)
T ss_pred EEEcCCCCc---------CCHHHHHHHHHh--cCCEEEEEEecCCCCCCceEEEEeCCH
Confidence 567777654 356789999998 7765 4455555556789999999864
No 113
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=65.70 E-value=2 Score=50.74 Aligned_cols=60 Identities=23% Similarity=0.411 Sum_probs=0.0
Q ss_pred HHHHhchhHHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q 038527 398 IELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALN 459 (630)
Q Consensus 398 l~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~n 459 (630)
.+|++++..-+.+..+++.++..|+-+.. +-+..+..++++|+..|..+..+|..+++-.
T Consensus 540 ~~le~~~~~l~e~~~e~~~~~~~le~l~~--~~~~~~~~ki~~Le~~L~~k~~e~~~~eer~ 599 (713)
T PF05622_consen 540 QKLEEHLEKLRELKDELQKKREQLEELEQ--ELNQSLSQKIEELEEALQKKEEEMRAMEERY 599 (713)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHhHHHHHhHHHHH
Confidence 44444444444444555554444443221 1123346789999999999999998887544
No 114
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=65.61 E-value=3.1e+02 Score=33.20 Aligned_cols=87 Identities=13% Similarity=0.256 Sum_probs=54.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHH---HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 278 MKYLETSTYLDLTMEQMDEMNKSRNE---EIRKM----------QQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQL 344 (630)
Q Consensus 278 ~k~~e~~~sL~r~meEk~~l~~~yne---E~~km----------Q~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L 344 (630)
.++.+.+.+...+--|++.+.+.... |+.++ .......++.....+..||.+|++-+.++.....++
T Consensus 485 LKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev 564 (786)
T PF05483_consen 485 LKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEV 564 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555665555555555444332 22222 233555777778888888999999888888888887
Q ss_pred HHHHhhcHHHHHhhHHHHHH
Q 038527 345 QYREAKNETERKKLHSEKIM 364 (630)
Q Consensus 345 ~~~~a~~~~er~kl~~E~~k 364 (630)
.-.--.++...|..+-|+-+
T Consensus 565 ~~kl~ksEen~r~~e~e~~~ 584 (786)
T PF05483_consen 565 KCKLDKSEENARSIECEILK 584 (786)
T ss_pred HHHhhhHHHhhHHHHHHHhh
Confidence 76555666666666555544
No 115
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=65.34 E-value=1.7e+02 Score=30.09 Aligned_cols=69 Identities=22% Similarity=0.327 Sum_probs=40.1
Q ss_pred hHHhHHHhhhhhHHHhhcc----cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHH
Q 038527 410 LELEIEQKRGTIQVMKHMR----EENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARK 478 (630)
Q Consensus 410 LELEi~qlkg~L~vmKh~~----~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark 478 (630)
||-++..+...|.-+..-. .-...+..+|..|...|.+-+...+..+.-++.|-..--.-.++|...+.
T Consensus 146 LE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~ 218 (237)
T PF00261_consen 146 LEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE 218 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555544443321 11223567788888888888888887777777775544444455554443
No 116
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=65.25 E-value=1.3e+02 Score=34.59 Aligned_cols=111 Identities=16% Similarity=0.125 Sum_probs=64.4
Q ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH------------------------HHHH
Q 038527 254 KTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEI------------------------RKMQ 309 (630)
Q Consensus 254 k~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~------------------------~kmQ 309 (630)
.+++.+.||-..+....+||++-.....-.-+-|.++-..--.|.+.|--|| ..||
T Consensus 387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ 466 (527)
T PF15066_consen 387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ 466 (527)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5688899999999999999998776666555666666555555555555544 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHH
Q 038527 310 QSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIM 364 (630)
Q Consensus 310 ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~k 364 (630)
+.--+--....-..+-|+.|-+..-+++-+-..++++++..|-.+|++|....+|
T Consensus 467 ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leK 521 (527)
T PF15066_consen 467 QLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEK 521 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3322222222233333334444444444455555666666666666666544433
No 117
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=64.87 E-value=1.6e+02 Score=29.59 Aligned_cols=53 Identities=13% Similarity=0.269 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 294 MDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQY 346 (630)
Q Consensus 294 k~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~ 346 (630)
-..++..|-.+|..--..++..+.+++-....+..+++.-..++..|..+...
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~ 76 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAEL 76 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666667777777777777777776666666666666554
No 118
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=64.48 E-value=3.4e+02 Score=33.32 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=18.8
Q ss_pred HHHHHhchhHHhhhHHhHHHhhhhhH-HHhhc
Q 038527 397 IIELQKGLDAKQALELEIEQKRGTIQ-VMKHM 427 (630)
Q Consensus 397 il~LEkqLd~kQ~LELEi~qlkg~L~-vmKh~ 427 (630)
+.+++..++.-+.++-++++++.+|. +-+.+
T Consensus 680 ~~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~ 711 (908)
T COG0419 680 EEQLEEKLEELEQLEEELEQLREELEELLKKL 711 (908)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666667777777777763 34444
No 119
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=63.62 E-value=78 Score=32.49 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=13.6
Q ss_pred ccHHHHHHHHHHHHhhhcc
Q 038527 469 SNDELQEARKELINSLKEG 487 (630)
Q Consensus 469 sndElq~ark~li~~l~~~ 487 (630)
....+..+|..++..+..+
T Consensus 138 l~~~l~~~r~~l~~~l~~i 156 (302)
T PF10186_consen 138 LQSQLARRRRQLIQELSEI 156 (302)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456777888888877754
No 120
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=63.02 E-value=2.1e+02 Score=30.25 Aligned_cols=67 Identities=28% Similarity=0.368 Sum_probs=30.1
Q ss_pred hcHHHHHhhHHHHHHh--HhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchh-HHhhhHHhHHHhh
Q 038527 350 KNETERKKLHSEKIMN--ERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLD-AKQALELEIEQKR 418 (630)
Q Consensus 350 ~~~~er~kl~~E~~kn--~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd-~kQ~LELEi~qlk 418 (630)
.+..+...|..|+... +.++++-.-+ +++...++-..+.+.+..++..+|+.+. .++.++.++..+.
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~--~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~ 155 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELA--ELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIR 155 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555444443 3333332222 2333333334455555555555555543 3445555554443
No 121
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=63.01 E-value=2.7e+02 Score=31.53 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=82.7
Q ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 254 KTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQ 333 (630)
Q Consensus 254 k~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k 333 (630)
|-..+...|.--|+..-+.-.+|+-..-+...+|+-.-|.+++....-..---+.|--..++.+..++|.-.||.+-++.
T Consensus 282 Kveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L 361 (442)
T PF06637_consen 282 KVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSL 361 (442)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666777777777788888888888888888888777755555555888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHhhH
Q 038527 334 KMQLEEHEKQLQYREAKNETERKKLH 359 (630)
Q Consensus 334 ~~eL~~r~k~L~~~~a~~~~er~kl~ 359 (630)
.++|+.+.++++.+..+.+-.-.-|+
T Consensus 362 ~keLeekkreleql~~q~~v~~saLd 387 (442)
T PF06637_consen 362 AKELEEKKRELEQLKMQLAVKTSALD 387 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999987666554444444
No 122
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=62.96 E-value=4.3e+02 Score=33.98 Aligned_cols=57 Identities=23% Similarity=0.320 Sum_probs=28.5
Q ss_pred HHhhhHHhHHHhhhhhHHHhhccccc----HHHHHHHHHHHHHHHHHHhhhHHHHHhhHHH
Q 038527 406 AKQALELEIEQKRGTIQVMKHMREEN----VEVQEKMDAIIKEIKEKEGEMDVVEALNQSL 462 (630)
Q Consensus 406 ~kQ~LELEi~qlkg~L~vmKh~~~~d----~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L 462 (630)
.+++|.-+-.+++--+++.+++..+. .+++..|..|++.++.+.-++...+.++.+.
T Consensus 596 ~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~ 656 (1317)
T KOG0612|consen 596 SKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKREN 656 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34555555555565666666652222 2344555555555555555554444444433
No 123
>PTZ00464 SNF-7-like protein; Provisional
Probab=62.84 E-value=1.9e+02 Score=29.79 Aligned_cols=67 Identities=9% Similarity=0.077 Sum_probs=30.6
Q ss_pred HHHHHhchhHHhhhHHhHHHhhhhhHHHhhcccccHHHHHH-----HHHHHHHHHHHHhhhHHHHHhhHHHH
Q 038527 397 IIELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEK-----MDAIIKEIKEKEGEMDVVEALNQSLI 463 (630)
Q Consensus 397 il~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k-----~~~l~~~l~ek~~~l~~~e~~nq~L~ 463 (630)
+-+|..++..=..+-.-|+..+-..+|+..|...-..+++. |+.+..-+.+-.+.|+..+.++.+|.
T Consensus 77 l~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls 148 (211)
T PTZ00464 77 QDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMG 148 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444445555555555556666552222222221 23333333333444555566666664
No 124
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=62.54 E-value=1.1e+02 Score=29.71 Aligned_cols=108 Identities=11% Similarity=0.055 Sum_probs=51.7
Q ss_pred hhhhhhhCCCCcChhhHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHH
Q 038527 231 IGDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTME---QMDEMNKSRNEEIRK 307 (630)
Q Consensus 231 ig~~Lrk~gdLKTv~ei~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~me---Ek~~l~~~yneE~~k 307 (630)
+|.|+---+.| .+......+.-++-|..|.+.+..-.........-...+..+++.... .++....+|.+++++
T Consensus 13 ~G~~CPTgC~i---~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~ 89 (146)
T PF08702_consen 13 FGSYCPTGCGI---QDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRK 89 (146)
T ss_dssp TTEEEE-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCcchH---HHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHH
Confidence 45555444433 334444445555555555555555555555554444555555554442 244566777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 308 MQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQL 344 (630)
Q Consensus 308 mQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L 344 (630)
|. -...++++..++.-=..|.+-.+.+..+-..|
T Consensus 90 ~~---~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~L 123 (146)
T PF08702_consen 90 MI---IYILETKIINQPSNIRVLQNILRSNRQKIQRL 123 (146)
T ss_dssp HH---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHH
Confidence 75 12233333344433344444444444433333
No 125
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=61.40 E-value=3.5e+02 Score=33.23 Aligned_cols=93 Identities=24% Similarity=0.389 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhch-hHHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhH
Q 038527 375 ADEKVWRLAQVHKEEKEKLRRKIIELQKGL-DAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMD 453 (630)
Q Consensus 375 ade~vlkL~e~hkrEKe~~~~kil~LEkqL-d~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~ 453 (630)
-.|+++|.+|.||.|...+.+-|.+-+++| ..||.-++|+.++|- +|-..| -+|+.++ ..|+
T Consensus 456 kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~--ev~eal--------~~~k~~q-------~kLe 518 (861)
T PF15254_consen 456 KNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKI--EVEEAL--------VNVKSLQ-------FKLE 518 (861)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--HHHHHH--------HHHHHHh-------hhHH
Confidence 358899999999999999999988888875 678888888887763 222222 1222222 2234
Q ss_pred HHHHhhHHHHHHHhhccHHHHHHHHHHHHhhh
Q 038527 454 VVEALNQSLIVRERKSNDELQEARKELINSLK 485 (630)
Q Consensus 454 ~~e~~nq~L~~ker~sndElq~ark~li~~l~ 485 (630)
.-|.-|+.|-|--|+-..|+...| +|..+|.
T Consensus 519 ~sekEN~iL~itlrQrDaEi~RL~-eLtR~LQ 549 (861)
T PF15254_consen 519 ASEKENQILGITLRQRDAEIERLR-ELTRTLQ 549 (861)
T ss_pred HHHhhhhHhhhHHHHHHHHHHHHH-HHHHHHH
Confidence 444556666666666555554443 3444443
No 126
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=61.30 E-value=1.3e+02 Score=28.47 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=23.6
Q ss_pred hhhHHhHHHhhhhhHHHhhc-ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHH
Q 038527 408 QALELEIEQKRGTIQVMKHM-REENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLI 463 (630)
Q Consensus 408 Q~LELEi~qlkg~L~vmKh~-~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~ 463 (630)
..|+-+++.|+.+.+.+=-| |+ -.++.+|-..++.+|.+|....|
T Consensus 71 ~~L~~el~~l~~ry~t~LellGE-----------K~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 71 EELEQELEELQQRYQTLLELLGE-----------KSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-----------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666665555 33 23334444455555555555544
No 127
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=61.15 E-value=5 Score=26.09 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=16.0
Q ss_pred eeccCCCCCCccccchHHHHhhh
Q 038527 40 YRCPFCRGKKETDYLYKELLQHA 62 (630)
Q Consensus 40 ~~CP~C~~kkK~~y~~~~LLqHA 62 (630)
|.||.|+.. |..-..|.+|-
T Consensus 1 y~C~~C~~~---f~~~~~l~~H~ 20 (23)
T PF00096_consen 1 YKCPICGKS---FSSKSNLKRHM 20 (23)
T ss_dssp EEETTTTEE---ESSHHHHHHHH
T ss_pred CCCCCCCCc---cCCHHHHHHHH
Confidence 789999855 77788888884
No 128
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=59.98 E-value=3.2e+02 Score=31.49 Aligned_cols=20 Identities=35% Similarity=0.152 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038527 328 SQLEAQKMQLEEHEKQLQYR 347 (630)
Q Consensus 328 ~eLe~k~~eL~~r~k~L~~~ 347 (630)
.||++++..++.+..+.+.+
T Consensus 347 sqlen~k~~~e~~~~e~~~l 366 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSL 366 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhh
Confidence 56666666666666666553
No 129
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=59.77 E-value=3.3e+02 Score=31.59 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=31.3
Q ss_pred HhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhh----hHHhHHHhhhh
Q 038527 366 ERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQA----LELEIEQKRGT 420 (630)
Q Consensus 366 ~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~----LELEi~qlkg~ 420 (630)
..|.|-+..|.+.+++-+++.-+.--+.+=+-.+-|-+..+.++ |-.-||+.-+-
T Consensus 140 ~~a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~~aiqr~a~~ 198 (514)
T TIGR03319 140 RISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEILATAIQRYAGD 198 (514)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 56777788888888888887654333333222222333333333 66666666543
No 130
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.51 E-value=2.2e+02 Score=34.61 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=30.2
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 247 KEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKM 308 (630)
Q Consensus 247 i~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~km 308 (630)
+..++....+.++..|..+...-.+...+++....+.....++.-++.+++-+...+.+.+.
T Consensus 510 ~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~ 571 (782)
T PRK00409 510 LIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEA 571 (782)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445666666666655555555555554444444444444334444444333333333
No 131
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=58.78 E-value=2.2e+02 Score=29.22 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH-----HHHhhHHHHHHhHhhhHHHhhh
Q 038527 301 RNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNET-----ERKKLHSEKIMNERATLEQKKA 375 (630)
Q Consensus 301 yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~-----er~kl~~E~~kn~lA~~EQ~ka 375 (630)
|.++..+......+++.++......+-..|+.-++..+.+|++++........ -.+.++.=..+...+...-.+|
T Consensus 93 ~~~~~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a 172 (239)
T cd07647 93 FREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEA 172 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455556666666666777788888888889999998864322111 1111111111113455555667
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHh-HHHhhhhhHH
Q 038527 376 DEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELE-IEQKRGTIQV 423 (630)
Q Consensus 376 de~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELE-i~qlkg~L~v 423 (630)
+++-...|+...+-.......+... ++.=|.||-+ |..|+..|.+
T Consensus 173 ~~~Y~~~v~~l~~~~~~~~~~~~~~---~~~~Q~lEe~Ri~~lk~~l~~ 218 (239)
T cd07647 173 DSAYKSSIGCLEDARVEWESEHATA---CQVFQNMEEERIKFLRNALWV 218 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 7665555555444333333333332 2222444443 5556555554
No 132
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=57.69 E-value=1.9e+02 Score=28.13 Aligned_cols=126 Identities=21% Similarity=0.303 Sum_probs=55.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH---HHH
Q 038527 279 KYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNE---TER 355 (630)
Q Consensus 279 k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~---~er 355 (630)
++..+...|.++-.+++.|.. +.+-+..=-+.+...-..++.+++..+.+++....+|..=...|..+...-+ +++
T Consensus 4 K~l~v~~kLK~~~~e~dsle~-~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 4 KFLHVEEKLKESESEKDSLED-HVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHHHHHHHHhHhhHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555444444433 2222221122234444455555555555544444444443333333333222 344
Q ss_pred HhhHHHHHHh--HhhhHHHhhhh-HHHHHHHHHHH-HHHHHHHHHHHHHHhchh
Q 038527 356 KKLHSEKIMN--ERATLEQKKAD-EKVWRLAQVHK-EEKEKLRRKIIELQKGLD 405 (630)
Q Consensus 356 ~kl~~E~~kn--~lA~~EQ~kad-e~vlkL~e~hk-rEKe~~~~kil~LEkqLd 405 (630)
..|..+.++. ++..+|.-.-+ .+.|.-+|..+ +.++..-..+.+|.+||.
T Consensus 83 ~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 83 ENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5554443333 34444433333 34444444444 445555556666666554
No 133
>smart00400 ZnF_CHCC zinc finger.
Probab=57.36 E-value=18 Score=28.87 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=29.8
Q ss_pred hccCCceEEecCCeeeccCCCCCCccccchHHHHhhhhccC
Q 038527 26 LKKGDLKVEVSETAYRCPFCRGKKETDYLYKELLQHASDVG 66 (630)
Q Consensus 26 Lk~g~~kVk~~~~~~~CP~C~~kkK~~y~~~~LLqHA~gvg 66 (630)
-++.++.|....+.|+|=.|+.+ .+.-+|+++-.+++
T Consensus 10 d~~pSf~v~~~kn~~~Cf~cg~g----Gd~i~fv~~~~~~s 46 (55)
T smart00400 10 EKTPSFSVSPDKQFFHCFGCGAG----GNVISFLMKYDKLS 46 (55)
T ss_pred CCCCCEEEECCCCEEEEeCCCCC----CCHHHHHHHHHCcC
Confidence 36778899988899999999643 57899999988763
No 134
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=57.35 E-value=2.1e+02 Score=28.46 Aligned_cols=95 Identities=18% Similarity=0.174 Sum_probs=64.2
Q ss_pred eeeecCCCCCCChhh--hhhhhCCCCcChhhHHHhhhh--hhhhHHHHHHHHHHHHhh-hHHHHHHHhhhhhHHHHHHHH
Q 038527 218 WIARDDDYNSKSLIG--DHLRKNGDLKTVSGKEAEDQR--KTSTLVTNLTRTLEVKDM-RYKEMEMKYLETSTYLDLTME 292 (630)
Q Consensus 218 WvAradDy~s~g~ig--~~Lrk~gdLKTv~ei~~E~~r--k~~~lv~~L~n~I~~kn~-~l~elE~k~~e~~~sL~r~me 292 (630)
|++.+++..+.+..+ .|||..+-|-+...|..-+.+ +...+=..+..||+.+.. .-.+.+...-+--.--.|+-.
T Consensus 15 ~~~~~~~~~~~~~~~~~s~LR~~tallDpa~~eEre~rR~kq~E~q~ai~~QieEk~r~k~~E~err~~EE~~EE~Rl~r 94 (157)
T PF15236_consen 15 NLGKASRVTSMQSSSKTSFLRGMTALLDPAQIEERERRRQKQLEHQRAIKQQIEEKRRQKQEEEERRRREEEEEEERLAR 94 (157)
T ss_pred hhcccccccccccccccCccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 566677776655555 899999999888888776666 344444556666665543 334444444455556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038527 293 QMDEMNKSRNEEIRKMQQSA 312 (630)
Q Consensus 293 Ek~~l~~~yneE~~kmQ~~a 312 (630)
++..|...|-+|..++.+.-
T Consensus 95 ere~~q~~~E~E~~~~~~KE 114 (157)
T PF15236_consen 95 EREELQRQFEEEQRKQREKE 114 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88889999999888776553
No 135
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=57.24 E-value=4.3e+02 Score=32.07 Aligned_cols=11 Identities=27% Similarity=0.262 Sum_probs=6.9
Q ss_pred cceEEEecccc
Q 038527 121 PWVGIVANIKT 131 (630)
Q Consensus 121 PwmgII~Ni~~ 131 (630)
||++||++..+
T Consensus 297 p~~~via~~~G 307 (717)
T PF10168_consen 297 PPVLVIATSNG 307 (717)
T ss_pred CCEEEEEecCC
Confidence 67777776543
No 136
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=56.20 E-value=16 Score=36.42 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=16.9
Q ss_pred HHHHHHHHHhchhHHhhhHHhHHHhhh
Q 038527 393 LRRKIIELQKGLDAKQALELEIEQKRG 419 (630)
Q Consensus 393 ~~~kil~LEkqLd~kQ~LELEi~qlkg 419 (630)
+..+-.-||-+||+|..|.-++|+|+.
T Consensus 12 AIERnalLE~ELdEKE~L~~~~QRLkD 38 (166)
T PF04880_consen 12 AIERNALLESELDEKENLREEVQRLKD 38 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCH-----
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556688888999889888888873
No 137
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=54.84 E-value=7 Score=26.39 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=18.3
Q ss_pred eeeccCCCCCCccccchHHHHhhhh
Q 038527 39 AYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 39 ~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
+|.|+.|... |..+..|+.|-.
T Consensus 1 ~~~C~~C~~~---F~~~~~l~~H~~ 22 (27)
T PF13912_consen 1 PFECDECGKT---FSSLSALREHKR 22 (27)
T ss_dssp SEEETTTTEE---ESSHHHHHHHHC
T ss_pred CCCCCccCCc---cCChhHHHHHhH
Confidence 5899999755 888999999953
No 138
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=53.81 E-value=26 Score=39.52 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=48.2
Q ss_pred eeccce--EEEeccccccCCCCcccccChhhHHHHHHhCCC-CCcccccccCCCCCceeEEEEeCCChhhhHHHHHHHhh
Q 038527 118 LVYPWV--GIVANIKTQRGEDGRYVGESGSKLRDEFRSKGF-NPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKS 194 (630)
Q Consensus 118 iVWPwm--gII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF-~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~lek~ 194 (630)
.++||. ..|-|+|.. .+...|++.|+..|. .+..++..-...+.+|+++|+|.+.-.- ..|+..=++
T Consensus 389 ~~~~ps~~L~v~NLp~~---------~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A-~~Al~~ln~ 458 (481)
T TIGR01649 389 NIQPPSATLHLSNIPLS---------VSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDA-VEALIALNH 458 (481)
T ss_pred ccCCCCcEEEEecCCCC---------CCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHH-HHHHHHhcC
Confidence 467885 456688765 367889999999554 3556666555556689999999985444 455554445
Q ss_pred hhhcC
Q 038527 195 FEVDH 199 (630)
Q Consensus 195 Fe~~~ 199 (630)
+...+
T Consensus 459 ~~l~~ 463 (481)
T TIGR01649 459 HQLNE 463 (481)
T ss_pred CccCC
Confidence 55443
No 139
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=53.74 E-value=4e+02 Score=30.70 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=30.0
Q ss_pred hhhhhHHHhhc--ccccHH---HHHHHHHHHHHHHHHHhhhHHHHHhhHHHH
Q 038527 417 KRGTIQVMKHM--REENVE---VQEKMDAIIKEIKEKEGEMDVVEALNQSLI 463 (630)
Q Consensus 417 lkg~L~vmKh~--~~~d~~---~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~ 463 (630)
|=|.|.|.--- ++=|+. .|+.|.++...|.|.-......|.++.--|
T Consensus 380 v~gtl~vahgsslDdVD~kIleak~al~evtt~lrErl~RWqQIE~lcGf~i 431 (575)
T KOG4403|consen 380 VFGTLHVAHGSSLDDVDHKILEAKSALSEVTTLLRERLHRWQQIESLCGFQI 431 (575)
T ss_pred hheeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcee
Confidence 44666654332 333543 467788888888888888877777664333
No 140
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=53.70 E-value=4.3 Score=48.04 Aligned_cols=92 Identities=18% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc-cccc------HHHHHHHHH-------HHHHHHHHHhhhH
Q 038527 388 EEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHM-REEN------VEVQEKMDA-------IIKEIKEKEGEMD 453 (630)
Q Consensus 388 rEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~-~~~d------~~~~~k~~~-------l~~~l~ek~~~l~ 453 (630)
.|+..+-.|+..+|.-...=..|++++++|...+.-...+ .+.. .+|...|.. |.+++.....++.
T Consensus 288 Ee~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~ 367 (722)
T PF05557_consen 288 EEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELR 367 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4667777888888877777789999999999999988887 3311 245555443 3444555556666
Q ss_pred HHHHhhHHHHHHHhhccHHHHHHHHH
Q 038527 454 VVEALNQSLIVRERKSNDELQEARKE 479 (630)
Q Consensus 454 ~~e~~nq~L~~ker~sndElq~ark~ 479 (630)
.++..|+.|-..-....+++++++..
T Consensus 368 ~l~~~~~~Le~e~~~l~~~~~~l~~~ 393 (722)
T PF05557_consen 368 ELEEEIQELEQEKEQLLKEIEELEAS 393 (722)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667766654434444444444443
No 141
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=53.52 E-value=6.3e+02 Score=32.85 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=40.5
Q ss_pred HHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhh
Q 038527 354 ERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKH 426 (630)
Q Consensus 354 er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh 426 (630)
.+.++..+.+.+++...+|++.-.+...|-...+ .....++.+|...|.||-+|..|...+.-...
T Consensus 834 ~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k-------~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s 899 (1294)
T KOG0962|consen 834 SLDKLRKEIECLQKEVIEQEREISRLINLRNELK-------EEKQKIERSLARLQQLEEDIEELSEEITRLDS 899 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3445555555667777777766666665555444 44455666777777777777777666554443
No 142
>PHA02540 61 DNA primase; Provisional
Probab=53.49 E-value=3.1 Score=45.37 Aligned_cols=126 Identities=13% Similarity=0.201 Sum_probs=67.6
Q ss_pred eeeccCCCCCCcc----ccchHH----HHhhhhccCCCCC-cChHHHHhhHHHHHHHHhhccccCCCCCCCCCCcccccc
Q 038527 39 AYRCPFCRGKKET----DYLYKE----LLQHASDVGRSRS-RGAREKAQHLALEKYVSKYLVVKDRSQLEPGTSSECLKI 109 (630)
Q Consensus 39 ~~~CP~C~~kkK~----~y~~~~----LLqHA~gvg~s~~-r~ak~ka~HlaLak~L~~dl~~~~~~~p~~~~~~~~~~~ 109 (630)
.++||||+.+.++ ...+.+ ++=|-+|-|++.+ =+--....|+.+..||+......+...+...+. +.+.
T Consensus 27 ~~~CPf~~ds~~~~~kpsF~V~p~k~~~~yhCFgCGa~Gd~i~Flme~e~lsf~Eav~~la~~~g~~~~~~~~~--~~~~ 104 (337)
T PHA02540 27 NFRCPICGDSQKDKNKARGWIYEKKDGGVFKCHNCGYHRPFGNFLKDYEPDLYREYIMERFKERGTGKGRPVPK--PKFE 104 (337)
T ss_pred EecCCCCCCccccCcCCcEEEeccCCceEEEecCCCCCCCHHHHHHHhcCCChHHHHHHHHHHhCCccccCCCC--CChh
Confidence 5899999986532 222322 3458887664421 122456677888889988776665322221110 0000
Q ss_pred CCCCCCceeeccceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHH
Q 038527 110 TDHQPDQLLVYPWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 110 ~~~~~dd~iVWPwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
........=.|+++-.+.+++ .+....++|..+|+.+..+..+ -|.++|.++.+.+
T Consensus 105 ~~~~~~~~~~~~~~~~l~~l~------------~~~~a~~YL~~RGi~~~~~~~~------------~~~~~~~~l~~~l 160 (337)
T PHA02540 105 FKKEKKVIEKLPFCERLDTLP------------EDHPIIKYVENRCIPKDKWKLL------------YFTREWQKLVNSI 160 (337)
T ss_pred HHHHHHHHHHHHHHHHHHhCc------------ccHHHHHHHHHcCCCHHHHHhc------------CCCccHHHHHHHH
Confidence 000000011134433333321 3445689999999999865532 2567888877765
Q ss_pred H
Q 038527 190 M 190 (630)
Q Consensus 190 ~ 190 (630)
.
T Consensus 161 ~ 161 (337)
T PHA02540 161 K 161 (337)
T ss_pred h
Confidence 4
No 143
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=52.43 E-value=1.6e+02 Score=34.97 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc
Q 038527 388 EEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 388 rEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~ 427 (630)
+|=+....+|-.|++.|..+ ..+|++|+++|.-.+.|
T Consensus 474 rei~~~~~~I~~L~~~L~e~---~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 474 REIRARDRRIERLEKELEEK---KKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45555667777788777766 34677777777666544
No 144
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=52.06 E-value=3.5e+02 Score=29.47 Aligned_cols=25 Identities=16% Similarity=0.042 Sum_probs=13.4
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHH
Q 038527 270 DMRYKEMEMKYLETSTYLDLTMEQM 294 (630)
Q Consensus 270 n~~l~elE~k~~e~~~sL~r~meEk 294 (630)
...|.++|+||...-++...+=.||
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek 107 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEK 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHH
Confidence 3456677777766544444333333
No 145
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=51.67 E-value=3.9e+02 Score=29.98 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 038527 321 LEHEKATSQLEA 332 (630)
Q Consensus 321 ~e~ekl~~eLe~ 332 (630)
..|-|+-..||+
T Consensus 114 ~khrKli~dLE~ 125 (561)
T KOG1103|consen 114 KKHRKLIKDLEA 125 (561)
T ss_pred HHHHHHHHHHHH
Confidence 333333334433
No 146
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=51.64 E-value=3.9e+02 Score=29.98 Aligned_cols=101 Identities=22% Similarity=0.224 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhH-------HHHHHh-HhhhHHHhhhhHHHHHHHHHHHH---
Q 038527 320 YLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLH-------SEKIMN-ERATLEQKKADEKVWRLAQVHKE--- 388 (630)
Q Consensus 320 ~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~-------~E~~kn-~lA~~EQ~kade~vlkL~e~hkr--- 388 (630)
-.+.+.|..+||=...+-..-.+.-++++.+-+++|+.-+ .|.++. .-|+-+-+||.+=.|+|-.+.-|
T Consensus 145 EKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k 224 (561)
T KOG1103|consen 145 EKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKK 224 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCC
Confidence 3444445555544433333333334444444444443321 222222 34555677888877777655422
Q ss_pred -HHHHHHHH------HHHHHhchhHHhhhHHhHHHhhhhhHH
Q 038527 389 -EKEKLRRK------IIELQKGLDAKQALELEIEQKRGTIQV 423 (630)
Q Consensus 389 -EKe~~~~k------il~LEkqLd~kQ~LELEi~qlkg~L~v 423 (630)
+.+.+-.+ -.|.||++. .+..|.++|+..|+-
T Consensus 225 ~eee~aaERerglqteaqvek~i~---EfdiEre~LRAel~r 263 (561)
T KOG1103|consen 225 GEEEAAAERERGLQTEAQVEKLIE---EFDIEREFLRAELER 263 (561)
T ss_pred ChHHHHHHHhhccchHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 22222222 233333332 345556666666653
No 147
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=51.08 E-value=37 Score=29.50 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038527 307 KMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREA 349 (630)
Q Consensus 307 kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a 349 (630)
.+++.+-++.+.++.+|-.|+.++++..++|....+.|.+.+.
T Consensus 29 ~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~ 71 (75)
T PF07989_consen 29 RLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEK 71 (75)
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678889999999999999999999999999999987553
No 148
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=50.87 E-value=5.9e+02 Score=31.79 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHHhhhcc--CCccccceeecCCCCChHHHHHHHhcCCCchhhHHHHHHHHHHHHhhcCCCCc
Q 038527 470 NDELQEARKELINSLKEG--RTRATIGVKRMGEIDNRPFLAAAKAKFPAEEADEKGLELCSLWEEYLRDPNWH 540 (630)
Q Consensus 470 ndElq~ark~li~~l~~~--~~~~~IgiKrmGeld~~~f~~ac~~k~~~~~~~~~a~~l~s~Wq~~l~dp~W~ 540 (630)
++.|-.++..-|..|.+- .-.++.++ |-++.-.|+..-- +.+-..+..+-..|-++|-|+.=+
T Consensus 587 ~~il~~~~~~~~q~lq~al~~ld~P~~~---~~~~~p~~Llst~-----~~~s~n~~~~e~~~~~yla~~~d~ 651 (980)
T KOG0980|consen 587 DPILDGSLASGIQALQNALYQLDSPLHW---RCLTSPDFLLSTA-----ENASVNATQFETSFNNYLADGDDA 651 (980)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCccc---CcCCCHHHHHHHH-----HHHHHHHHHHHHHHhhhcCCchhh
Confidence 455555555555544432 12344565 7788888887742 356667777888899998887655
No 149
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=50.54 E-value=3.2e+02 Score=28.59 Aligned_cols=83 Identities=22% Similarity=0.234 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhcHHHHHhh---HHHHHHhHhhhHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhchhHHhhhHHhHH
Q 038527 340 HEKQLQYREAKNETERKKL---HSEKIMNERATLEQKKADEKVWRLAQVHK-EEKEKLRRKIIELQKGLDAKQALELEIE 415 (630)
Q Consensus 340 r~k~L~~~~a~~~~er~kl---~~E~~kn~lA~~EQ~kade~vlkL~e~hk-rEKe~~~~kil~LEkqLd~kQ~LELEi~ 415 (630)
+.++|+++...+.++|... +.+.++..+.....-+.=++.+--.|.|| +--..++-..+-.|...++| +||+
T Consensus 126 q~~~Leklr~k~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl~DlK~i~sdFv~iEM~fHaK-ALEv--- 201 (219)
T PF06730_consen 126 QLKQLEKLRQKNPSDRQIISQAESELQKASVDATRTTKQLEETIDNFEKQKLKDLKKIFSDFVTIEMVFHAK-ALEV--- 201 (219)
T ss_pred HHHHHHHHHccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---
Confidence 4567888888888888443 33444433333333333355555566666 45556666777778877776 3333
Q ss_pred HhhhhhHHHhhc
Q 038527 416 QKRGTIQVMKHM 427 (630)
Q Consensus 416 qlkg~L~vmKh~ 427 (630)
+....|.+-.+
T Consensus 202 -~T~a~q~i~~i 212 (219)
T PF06730_consen 202 -YTAAYQDIQNI 212 (219)
T ss_pred -HHHHHHHHhcC
Confidence 44444544444
No 150
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=50.08 E-value=3e+02 Score=28.19 Aligned_cols=47 Identities=32% Similarity=0.328 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhH
Q 038527 313 HDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLH 359 (630)
Q Consensus 313 ~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~ 359 (630)
.+-+.-.-.+-++|+.+||--+...+...++..++......++.++.
T Consensus 133 DD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K 179 (192)
T PF09727_consen 133 DDFTNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLK 179 (192)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566788888888988888888888888887766666666543
No 151
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=49.79 E-value=47 Score=37.76 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=42.3
Q ss_pred HhhHHHHHHh-----HhhhHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhh
Q 038527 356 KKLHSEKIMN-----ERATLEQKKAD--EKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQAL 410 (630)
Q Consensus 356 ~kl~~E~~kn-----~lA~~EQ~kad--e~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~L 410 (630)
+-+.+|+++. +|.++..+... .++|+-+++-+++|++|+.-..+.|++|.+++.+
T Consensus 12 kyvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e~~ 73 (436)
T PF01093_consen 12 KYVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEEEV 73 (436)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666665 66666655554 5788889999999999999999999999888764
No 152
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=49.65 E-value=2.5e+02 Score=27.08 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHh
Q 038527 383 AQVHKEEKEKLRRKIIELQKGLDAKQ 408 (630)
Q Consensus 383 ~e~hkrEKe~~~~kil~LEkqLd~kQ 408 (630)
.+++...-+.+-.+|..||.+|+.-.
T Consensus 68 ~~~~~~~~E~l~rriq~LEeele~ae 93 (143)
T PF12718_consen 68 SEKRKSNAEQLNRRIQLLEEELEEAE 93 (143)
T ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 34444556688888888888887654
No 153
>PRK09039 hypothetical protein; Validated
Probab=49.50 E-value=3.9e+02 Score=29.30 Aligned_cols=44 Identities=7% Similarity=0.108 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 038527 259 VTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRN 302 (630)
Q Consensus 259 v~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yn 302 (630)
|+.|...+.--+.....++.........|+-...++..|...|.
T Consensus 62 Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 62 IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44466556666666666666666665555544444554444444
No 154
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=48.98 E-value=6.7e+02 Score=31.88 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=30.9
Q ss_pred HHHhhcHHHHHhhHHHHHHh-----HhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHH
Q 038527 346 YREAKNETERKKLHSEKIMN-----ERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIE 415 (630)
Q Consensus 346 ~~~a~~~~er~kl~~E~~kn-----~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~ 415 (630)
++.-.+.+-++.+..+...| -+....|-.+.-+. |...+|..++-+.+.+++|..-...+-+|.-.++
T Consensus 447 kl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~e--l~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~k 519 (1195)
T KOG4643|consen 447 KLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEE--LLNQIKNLNKSLNNRDLELSRLHALKNELKEQYK 519 (1195)
T ss_pred HHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443343 23334444443222 2233555555666655555554444444443333
No 155
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=48.49 E-value=4.9e+02 Score=30.12 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhchhHHhhhHHh
Q 038527 389 EKEKLRRKIIELQKGLDAKQALELE 413 (630)
Q Consensus 389 EKe~~~~kil~LEkqLd~kQ~LELE 413 (630)
.-.++..+|-.||+-++.....+.+
T Consensus 379 ~l~~~~~~~~~le~~~~~~~~~~~~ 403 (582)
T PF09731_consen 379 KLAELNSRLKALEEALDARSEAEDE 403 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665544443
No 156
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=48.33 E-value=3.1e+02 Score=27.82 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038527 327 TSQLEAQKMQLEEHEKQLQY 346 (630)
Q Consensus 327 ~~eLe~k~~eL~~r~k~L~~ 346 (630)
+.+|.+++..-++||.-|++
T Consensus 59 ~~dl~~qL~aAEtRCslLEK 78 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEK 78 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 67888888999999999987
No 157
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=47.29 E-value=3.3e+02 Score=27.88 Aligned_cols=31 Identities=39% Similarity=0.538 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhcCCCCcceeEEecCCCCcccccc
Q 038527 523 GLELCSLWEEYLRDPNWHPFKILVDKEGNCKEIID 557 (630)
Q Consensus 523 a~~l~s~Wq~~l~dp~W~PFk~v~~~~g~~keii~ 557 (630)
.+-|.+.=-.+|.=|= ||.+..- |....|+|
T Consensus 204 vahlv~lls~yL~v~L--py~i~~~--gs~s~i~d 234 (302)
T PF10186_consen 204 VAHLVSLLSRYLGVPL--PYPITPS--GSRSTIID 234 (302)
T ss_pred HHHHHHHHHHHhCCCC--CCCcccC--ccccchhh
Confidence 3445555556776554 4555533 45555555
No 158
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=47.12 E-value=3.7e+02 Score=28.39 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=11.0
Q ss_pred HHhhhHHhHHHhhhhhHHHhh
Q 038527 406 AKQALELEIEQKRGTIQVMKH 426 (630)
Q Consensus 406 ~kQ~LELEi~qlkg~L~vmKh 426 (630)
..++|+-+|.-|++.+.-+..
T Consensus 118 ~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 118 EIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 159
>PLN03120 nucleic acid binding protein; Provisional
Probab=47.10 E-value=34 Score=36.36 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=41.6
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHHHHHh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEK 193 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~lek 193 (630)
.+.|-|++.. .+..+|++.|+. |.+. .+.... ...++|++.|.|... .+...|+.|..
T Consensus 6 tVfVgNLs~~---------tTE~dLrefFS~--~G~I~~V~I~~-d~~~~GfAFVtF~d~-eaAe~AllLnG 64 (260)
T PLN03120 6 TVKVSNVSLK---------ATERDIKEFFSF--SGDIEYVEMQS-ENERSQIAYVTFKDP-QGAETALLLSG 64 (260)
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEee-cCCCCCEEEEEeCcH-HHHHHHHHhcC
Confidence 4678888764 367899999998 7665 444433 334689999999654 77788886544
No 160
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=46.78 E-value=3.3e+02 Score=27.66 Aligned_cols=157 Identities=22% Similarity=0.317 Sum_probs=83.9
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 270 DMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQ---QSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQY 346 (630)
Q Consensus 270 n~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ---~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~ 346 (630)
.+-..+|..-||..|. .+=.++.+..+||..|. .........|..+|.+|..-|.....+.+.=.++|..
T Consensus 8 e~af~~iK~YYndIT~-------~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 8 EKAFQEIKNYYNDITL-------NNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666543 23345566666555444 4455567777888888888777766555554444433
Q ss_pred HHhhcHHHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHh-hhHHhHHHhhhhhHHHh
Q 038527 347 REAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQ-ALELEIEQKRGTIQVMK 425 (630)
Q Consensus 347 ~~a~~~~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ-~LELEi~qlkg~L~vmK 425 (630)
-+.++..|..-+ ..+..+++ -+..-+-|-+.+..++.+|+++-|.=. +.+.-|+.+..+...=-
T Consensus 81 ----y~kdK~~L~~~k--~rl~~~ek---------~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn 145 (201)
T PF13851_consen 81 ----YEKDKQSLQNLK--ARLKELEK---------ELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKN 145 (201)
T ss_pred ----HHHHHHHHHHHH--HHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333332111 11222221 122334556666667777666655432 44444444433332211
Q ss_pred hcccccHHHHHHHHHHHHHHHHHHhhhHH
Q 038527 426 HMREENVEVQEKMDAIIKEIKEKEGEMDV 454 (630)
Q Consensus 426 h~~~~d~~~~~k~~~l~~~l~ek~~~l~~ 454 (630)
-=+.+||..|.+.|+.++..|..
T Consensus 146 ------~lLEkKl~~l~~~lE~keaqL~e 168 (201)
T PF13851_consen 146 ------LLLEKKLQALSEQLEKKEAQLNE 168 (201)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 12557888888888888888753
No 161
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=46.78 E-value=3.5e+02 Score=27.95 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=23.5
Q ss_pred HHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHH
Q 038527 406 AKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSL 462 (630)
Q Consensus 406 ~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L 462 (630)
+++.|..+|.+|+..++.++-- ...+.+.++.++.++.+...+++.++...+.|
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~---~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVY---NEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555554444444331 12223334444444444444444444444444
No 162
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=46.71 E-value=6e+02 Score=30.69 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=76.7
Q ss_pred HHHHhhhHHHHHHHhhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 266 LEVKDMRYKEMEMKYLETSTYLDLTMEQMD----EMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHE 341 (630)
Q Consensus 266 I~~kn~~l~elE~k~~e~~~sL~r~meEk~----~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~ 341 (630)
......|+.+|...+.+...+-. +++ .|++.+.+=.+.+-..|..+-+++..+...++.+|.+-...|-...
T Consensus 13 ~~t~~~~~~eL~~IW~~igE~~~----e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~ 88 (660)
T KOG4302|consen 13 EATCGNLLNELQKIWDEIGESET----ERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPS 88 (660)
T ss_pred HHHHHHHHHHHHHHHHHhCccHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 34445555555554444432222 222 3334444444456667778888888888777777777666555444
Q ss_pred HHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhh-
Q 038527 342 KQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGT- 420 (630)
Q Consensus 342 k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~- 420 (630)
..+....-.. -+|.|+-+. |...++.=..+|.+-.+.+-++-.|+ |+| -..|-|.
T Consensus 89 ~~~~~~~k~e----------------~tLke~l~~--l~~~le~lr~qk~eR~~ef~el~~qi---e~l---~~~l~g~~ 144 (660)
T KOG4302|consen 89 IIGEISDKIE----------------GTLKEQLES--LKPYLEGLRKQKDERRAEFKELYHQI---EKL---CEELGGPE 144 (660)
T ss_pred cccccccccC----------------ccHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---HHHhcCCc
Confidence 4433100000 133333322 22223322333344444444433222 222 2334455
Q ss_pred hHHHhhcccccHHHHHHHHHHHHHHHHHHhh
Q 038527 421 IQVMKHMREENVEVQEKMDAIIKEIKEKEGE 451 (630)
Q Consensus 421 L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~ 451 (630)
..+++...|+-.-+..++++++..|.+-.++
T Consensus 145 ~~~~~~~~D~~dlsl~kLeelr~~L~~L~~e 175 (660)
T KOG4302|consen 145 DLPSFLIADESDLSLEKLEELREHLNELQKE 175 (660)
T ss_pred cCCcccccCcccccHHHHHHHHHHHHHHHHH
Confidence 4445555444334558888888888654443
No 163
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.18 E-value=3.8e+02 Score=32.72 Aligned_cols=7 Identities=0% Similarity=-0.221 Sum_probs=3.2
Q ss_pred HHHhhhh
Q 038527 190 MFEKSFE 196 (630)
Q Consensus 190 ~lek~Fe 196 (630)
++-.+|.
T Consensus 426 aiLe~l~ 432 (771)
T TIGR01069 426 SILEYLL 432 (771)
T ss_pred HHHHHHH
Confidence 3444554
No 164
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=46.04 E-value=6.5e+02 Score=30.85 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=85.4
Q ss_pred CcChhhHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 241 LKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKY---LETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQ 317 (630)
Q Consensus 241 LKTv~ei~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~---~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ 317 (630)
-++|.+||..+.+-....|+.|--.-+....-+.+.|+.- -+.|.-|+....+....+.+|.+++.|--..|+--.-
T Consensus 412 rr~v~~mv~~grk~~~~~~~e~~ar~~~l~~v~re~eeer~aalias~~l~ea~~~irlqy~~~~~~l~k~~~~a~gvld 491 (828)
T PF04094_consen 412 RRAVDAMVEVGRKAHQAHLAEIQAREETLDSVMRETEEERQAALIASSVLDEALGDIRLQYEAHAEDLAKRVDDARGVLD 491 (828)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHhhhhhhh
Confidence 3677777766665555555555444444444444444432 2446667777777788899999999887665553322
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcHH---HHHhhHHHHHHhHhhhHHHhhhh-HHHHHHHHHHHHH
Q 038527 318 KIYLEHEKATSQLE----AQKMQLEEHEKQLQYREAKNET---ERKKLHSEKIMNERATLEQKKAD-EKVWRLAQVHKEE 389 (630)
Q Consensus 318 ~i~~e~ekl~~eLe----~k~~eL~~r~k~L~~~~a~~~~---er~kl~~E~~kn~lA~~EQ~kad-e~vlkL~e~hkrE 389 (630)
.. .-++.--.+.+ ..+..|+.+++.|+++...-+. +|...-.+.+ ..||+-|--=|. |..|+|-|+--.|
T Consensus 492 aa-aarErrAsE~eas~r~R~~ALEara~ALeERAr~~e~~L~~Re~a~a~Re-~TLAahEaa~AE~E~aLRLREeA~aE 569 (828)
T PF04094_consen 492 AA-AARERRASEAEASLRAREEALEARAKALEERARAAERSLEERERAAAQRE-ATLAAHEAAAAEEESALRLREEALAE 569 (828)
T ss_pred hh-hhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 12333333433 4455688888888777644442 3333333333 245555444232 6677777766555
Q ss_pred HHHHH
Q 038527 390 KEKLR 394 (630)
Q Consensus 390 Ke~~~ 394 (630)
-+.++
T Consensus 570 R~~~~ 574 (828)
T PF04094_consen 570 RDRAL 574 (828)
T ss_pred HHHHH
Confidence 55444
No 165
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=46.02 E-value=33 Score=36.10 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=40.0
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGF 185 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf 185 (630)
.++|-|++.. .+...|.+.|+. |.++ .|+.++.+ ....|+++|.|.+--...
T Consensus 271 ~lfV~NL~~~---------~~e~~L~~~F~~--fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 271 CIFVYNLSPD---------TDETVLWQLFGP--FGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--CCCeEEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 3778898875 256889999999 9886 77777764 457899999998755553
No 166
>PHA00616 hypothetical protein
Probab=45.95 E-value=7.6 Score=30.69 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=18.9
Q ss_pred eeeccCCCCCCccccchHHHHhhhhc
Q 038527 39 AYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 39 ~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
+|.||-|+.. |...++|.+|-..
T Consensus 1 pYqC~~CG~~---F~~~s~l~~H~r~ 23 (44)
T PHA00616 1 MYQCLRCGGI---FRKKKEVIEHLLS 23 (44)
T ss_pred CCccchhhHH---HhhHHHHHHHHHH
Confidence 4899999866 8889999999644
No 167
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.50 E-value=6.4e+02 Score=30.64 Aligned_cols=43 Identities=12% Similarity=0.076 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 038527 314 DHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERK 356 (630)
Q Consensus 314 ~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~ 356 (630)
.-.++-+.+...|+..+++...++.-.|.-.+.........-.
T Consensus 147 ~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~ 189 (716)
T KOG4593|consen 147 REKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQ 189 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666777888887777776665555444433333333
No 168
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=45.21 E-value=6.5e+02 Score=30.65 Aligned_cols=111 Identities=21% Similarity=0.270 Sum_probs=53.5
Q ss_pred HhhhHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhcccc-------cHHHHH
Q 038527 366 ERATLEQKKAD--EKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMREE-------NVEVQE 436 (630)
Q Consensus 366 ~lA~~EQ~kad--e~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~-------d~~~~~ 436 (630)
.+-+.||+++. ++-++++ ..++.++--+||.=...+..=|++++.|+..|..--.+-++ -.+++-
T Consensus 363 ~lL~~Eqqr~~~~ed~lk~l------~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qkll~ekk~~eki~E~lq~ 436 (786)
T PF05483_consen 363 ELLTTEQQRLKKNEDQLKIL------TMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQKLLDEKKQFEKIAEELQG 436 (786)
T ss_pred HHHHHHHHHHHHhHHHHHHH------HHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666665 2333322 23333444444443444444455555555555432211010 001111
Q ss_pred HHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHH
Q 038527 437 KMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELIN 482 (630)
Q Consensus 437 k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~ 482 (630)
.=.+|..-|.-.+.++.+|+..-.+.+..++..--.+.+.+++|..
T Consensus 437 ~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~ 482 (786)
T PF05483_consen 437 TEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQ 482 (786)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2223333344444555666666666666777777777777777765
No 169
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=45.04 E-value=7.1 Score=46.23 Aligned_cols=89 Identities=26% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHhhHHHHH-HhHh-------hhHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 038527 336 QLEEHEKQLQYREAKNETERKKLHSEKI-MNER-------ATLEQKKAD-EKVWRLAQVHKEEKEKLRRKIIELQKGLDA 406 (630)
Q Consensus 336 eL~~r~k~L~~~~a~~~~er~kl~~E~~-kn~l-------A~~EQ~kad-e~vlkL~e~hkrEKe~~~~kil~LEkqLd~ 406 (630)
.|..++..++++++.-+.-|+||++=-- +.++ +.+-++++. |+-++-+..-+.+-+.+-..|.+|+.+|+.
T Consensus 302 ~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~ 381 (713)
T PF05622_consen 302 ELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSE 381 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666777666666666642100 0011 111112221 333444444444555566667777777655
Q ss_pred H----hhhHHhHHHhhhhhHHH
Q 038527 407 K----QALELEIEQKRGTIQVM 424 (630)
Q Consensus 407 k----Q~LELEi~qlkg~L~vm 424 (630)
. ..|+.|+.+|+.++..+
T Consensus 382 ~~~~~~~l~~e~~~L~ek~~~l 403 (713)
T PF05622_consen 382 ESRRADKLEFENKQLEEKLEAL 403 (713)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4 34667777777666544
No 170
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=44.82 E-value=2.1e+02 Score=31.05 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=21.7
Q ss_pred cccceeecCCCCChHHHHHHHhcCCCchhhHHHHHHHHHHHHhhcCCCCcceeEE-ecCCCCcccccccC
Q 038527 491 ATIGVKRMGEIDNRPFLAAAKAKFPAEEADEKGLELCSLWEEYLRDPNWHPFKIL-VDKEGNCKEIIDVE 559 (630)
Q Consensus 491 ~~IgiKrmGeld~~~f~~ac~~k~~~~~~~~~a~~l~s~Wq~~l~dp~W~PFk~v-~~~~g~~keii~ed 559 (630)
+.|-==|+|-|...|--=. . -.-|-..++-|...=-..| +...+-|+.| .| ...-|++-+
T Consensus 151 GTINGlRLGrl~~~~V~W~--E---INAA~Gq~~LLL~~la~~l-~~~f~~y~l~P~G---s~S~I~~~~ 211 (314)
T PF04111_consen 151 GTINGLRLGRLPNVPVEWN--E---INAAWGQTALLLQTLAKKL-NFKFQRYRLVPMG---SFSKIEKLE 211 (314)
T ss_dssp EEETTEEE--BTTB---HH--H---HHHHHHHHHHHHHHHHHHC-T---SSEEEE--G---GG-EEEECS
T ss_pred eeECCeeeccCCCCCCChH--H---HHHHHHHHHHHHHHHHHHh-CCCcccceeEecC---CCCEEEEec
Confidence 3344457887765442100 0 0012233344444444433 4666667777 53 444444444
No 171
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=44.79 E-value=3e+02 Score=26.56 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=11.9
Q ss_pred hhHHhHHHhhhhhHHHhhc
Q 038527 409 ALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 409 ~LELEi~qlkg~L~vmKh~ 427 (630)
.||-++.++..+|.-.++.
T Consensus 46 ~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 46 QLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666665
No 172
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.72 E-value=1.1e+02 Score=29.77 Aligned_cols=95 Identities=24% Similarity=0.328 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhh
Q 038527 389 EKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERK 468 (630)
Q Consensus 389 EKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~ 468 (630)
+-.++-..|.+|..||. .|.-++..|+..|..+... -...++...|..|..++...++.|+.+.+ +... -
T Consensus 73 el~~ld~ei~~L~~el~---~l~~~~k~l~~eL~~L~~~-~t~~el~~~i~~l~~e~~~l~~kL~~l~~-~~~~-----v 142 (169)
T PF07106_consen 73 ELAELDAEIKELREELA---ELKKEVKSLEAELASLSSE-PTNEELREEIEELEEEIEELEEKLEKLRS-GSKP-----V 142 (169)
T ss_pred hHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCC-----C
Q ss_pred ccHHHHHHHHHHHHhhhccCCcccc
Q 038527 469 SNDELQEARKELINSLKEGRTRATI 493 (630)
Q Consensus 469 sndElq~ark~li~~l~~~~~~~~I 493 (630)
+.+|.+.+.+..-.....+..|-.|
T Consensus 143 s~ee~~~~~~~~~~~~k~w~kRKri 167 (169)
T PF07106_consen 143 SPEEKEKLEKEYKKWRKEWKKRKRI 167 (169)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
No 173
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.59 E-value=6.8e+02 Score=30.42 Aligned_cols=69 Identities=14% Similarity=0.192 Sum_probs=37.8
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 271 MRYKEMEMKYLETSTYLDLTMEQMDEMN---KSRNEEIRKMQQSA---HDHFQKIYLEHEKATSQLEAQKMQLEE 339 (630)
Q Consensus 271 ~~l~elE~k~~e~~~sL~r~meEk~~l~---~~yneE~~kmQ~~a---~~~~~~i~~e~ekl~~eLe~k~~eL~~ 339 (630)
.|+...+--+.+....+...+.++++.+ ....+++..++..| .+-+.+|.+.++.|..-++..++.+..
T Consensus 551 eYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~ 625 (717)
T PF10168_consen 551 EYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNS 625 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555555554443322 23344455554444 556677777777777777766555543
No 174
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.42 E-value=1.8e+02 Score=29.21 Aligned_cols=58 Identities=26% Similarity=0.312 Sum_probs=38.7
Q ss_pred HhhhHHhHHHhhhhhHHHhhc-ccc--cHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHH
Q 038527 407 KQALELEIEQKRGTIQVMKHM-REE--NVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIV 464 (630)
Q Consensus 407 kQ~LELEi~qlkg~L~vmKh~-~~~--d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ 464 (630)
.+.++.+|..|+..|+..+-- .+. -.....++.+|..++.....+|+.....+...|-
T Consensus 78 ~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~ 138 (188)
T PF03962_consen 78 IEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIE 138 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 346677788888888887664 221 1245667788888888888888766666666553
No 175
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=43.32 E-value=5.5e+02 Score=29.30 Aligned_cols=77 Identities=23% Similarity=0.200 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhcccccHHH-HHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHH
Q 038527 388 EEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEV-QEKMDAIIKEIKEKEGEMDVVEALNQSLIVRE 466 (630)
Q Consensus 388 rEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~~~-~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ke 466 (630)
||..++.+--.+|-.- |-.||.+|++-|-- --||.+-+-. -+--=+|.-=|.=|+.++.++..-.+.|-
T Consensus 463 rEnQELnaHNQELnnR------LaaEItrLRtlltg-dGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLk--- 532 (593)
T KOG4807|consen 463 RENQELNAHNQELNNR------LAAEITRLRTLLTG-DGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLK--- 532 (593)
T ss_pred HhhHHHHHHHHHHhhH------HHHHHHHHHHHhcc-CCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHH---
Confidence 5666665555555443 45689999986641 1111111111 11123455666777777777766666664
Q ss_pred hhccHHHHHHHH
Q 038527 467 RKSNDELQEARK 478 (630)
Q Consensus 467 r~sndElq~ark 478 (630)
||||-|-+
T Consensus 533 ----DELQtalr 540 (593)
T KOG4807|consen 533 ----DELQTALR 540 (593)
T ss_pred ----HHHHHHHh
Confidence 77776643
No 176
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=43.22 E-value=4.2e+02 Score=27.83 Aligned_cols=209 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 257 TLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQ 336 (630)
Q Consensus 257 ~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~e 336 (630)
.....+...|..-.+.+.+.-...-.....+..+.+|.+-+-..|.+|+..++.... ....++-..--..+|.+.+++
T Consensus 96 ~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~--~~~~~e~~~~~~~dL~~~L~e 173 (312)
T PF00038_consen 96 AERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ--SSVTVEVDQFRSSDLSAALRE 173 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT------------------HHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc--cccceeecccccccchhhhhh
Q ss_pred HHHHHHHHHHHHhhcHHHHHhhHHHHHHh-HhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHH
Q 038527 337 LEEHEKQLQYREAKNETERKKLHSEKIMN-ERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIE 415 (630)
Q Consensus 337 L~~r~k~L~~~~a~~~~er~kl~~E~~kn-~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~ 415 (630)
+......+-. .-|..++.--+.. .-...........+-.+-++=+.-+..+..--.+|+.....+..||-.|.
T Consensus 174 iR~~ye~~~~------~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~ 247 (312)
T PF00038_consen 174 IRAQYEEIAQ------KNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLR 247 (312)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh------hhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHH
Q ss_pred HhhhhhHHHhhc-ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 038527 416 QKRGTIQVMKHM-REENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKEL 480 (630)
Q Consensus 416 qlkg~L~vmKh~-~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~l 480 (630)
.|...+...... ...=......|..+..++.....+..+|-+..-+|-. |+..-|+-|
T Consensus 248 ~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~-------EIatYR~LL 306 (312)
T PF00038_consen 248 ELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLALDA-------EIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHH
No 177
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=42.67 E-value=6.8e+02 Score=30.72 Aligned_cols=52 Identities=13% Similarity=0.230 Sum_probs=26.1
Q ss_pred HHhhhHHhHHHhhhhhHHHhhc-ccccH--HHHHHHHHHHHHHHHHHhhhHHHHH
Q 038527 406 AKQALELEIEQKRGTIQVMKHM-REENV--EVQEKMDAIIKEIKEKEGEMDVVEA 457 (630)
Q Consensus 406 ~kQ~LELEi~qlkg~L~vmKh~-~~~d~--~~~~k~~~l~~~l~ek~~~l~~~e~ 457 (630)
+++.|+.-+.+.+-+..+..-+ ...-+ .+..+..+++.+|--+.+.|..+-+
T Consensus 593 q~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~~~~l~~~~e~l~~~~~ 647 (809)
T KOG0247|consen 593 QKMELQQKFSEKKKAMAKVRGILANTSPECSVAAKLLELQSKLWFKDEKLKHLTA 647 (809)
T ss_pred hhHHHHhhccchhHHHhhhccccCCCchhhhHHHHHHHHHHHhcccHHHHHHhhc
Confidence 3445555555555555555554 22222 3455555566665555555544433
No 178
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=42.44 E-value=3.4e+02 Score=27.90 Aligned_cols=71 Identities=25% Similarity=0.216 Sum_probs=43.6
Q ss_pred HhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHH
Q 038527 366 ERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKE 444 (630)
Q Consensus 366 ~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~ 444 (630)
+|+++-|.++. +-.-.|..|+-.+...++--+|.+.|+.-++ +++.|+-.|.-.+|- |+.+..++-.++..
T Consensus 89 ~L~~~~qk~~t--l~e~~en~K~~~e~tEer~~el~kklnslkk---~~e~lr~el~k~~e~---dpqv~~k~~~~~K~ 159 (203)
T KOG3433|consen 89 QLATGSQKKAT--LGESIENRKAGREETEERTDELTKKLNSLKK---ILESLRWELAKIQET---DPQVFEKKVHLEKT 159 (203)
T ss_pred HHHHhhhhHhH--HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhc---CHHHHHHHHHHHHH
Confidence 44455555444 1124455555566666666688888888887 666777666655553 77777666665543
No 179
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=42.11 E-value=4.3e+02 Score=27.65 Aligned_cols=67 Identities=22% Similarity=0.297 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHH
Q 038527 298 NKSRNEEIRKMQQSAHDHFQKIYLEHEKAT------SQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIM 364 (630)
Q Consensus 298 ~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~------~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~k 364 (630)
+..|.++++..+..-.+...+|..=-++++ ..|+.+..+++.-...|......+..+|..|+.++..
T Consensus 14 L~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e 86 (246)
T PF00769_consen 14 LRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELRE 86 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655555544443333332 3455555555555555655555555566666555444
No 180
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=41.98 E-value=3e+02 Score=25.84 Aligned_cols=67 Identities=21% Similarity=0.316 Sum_probs=35.2
Q ss_pred HHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc-ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHH
Q 038527 394 RRKIIELQKGLDAKQALELEIEQKRGTIQVMKHM-REENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLI 463 (630)
Q Consensus 394 ~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~-~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~ 463 (630)
...|..|..++.. +..+|.+|+-.++..+.. ..........=..|..++.+.....+++..-|..|-
T Consensus 58 ~~~L~~lr~e~~~---~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh 125 (132)
T PF07926_consen 58 IKELQQLREELQE---LQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLH 125 (132)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433 445566666555555443 222222333344566666666666666777777764
No 181
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=41.81 E-value=6.8e+02 Score=29.91 Aligned_cols=58 Identities=10% Similarity=0.161 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 257 TLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHD 314 (630)
Q Consensus 257 ~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~ 314 (630)
.+++.|..++......+.++-..|....-.+..+-.+.+.+.....+|+.++......
T Consensus 288 ~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~ 345 (754)
T TIGR01005 288 DLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLM 345 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888888888888888888888888888888888888888888877655443
No 182
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.75 E-value=3.7e+02 Score=27.58 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 315 HFQKIYLEHEKATSQLEAQKMQLE 338 (630)
Q Consensus 315 ~~~~i~~e~ekl~~eLe~k~~eL~ 338 (630)
.+..+-.+|.+|+.+|+....+++
T Consensus 133 ~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 133 VINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666665444433
No 183
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.37 E-value=3.2e+02 Score=28.02 Aligned_cols=15 Identities=13% Similarity=0.516 Sum_probs=7.1
Q ss_pred hhhhhcCCCccceeee
Q 038527 204 DFYAVKNLGDKLYGWI 219 (630)
Q Consensus 204 dW~~~~~~~~~LYGWv 219 (630)
+|...+..+ .-=|||
T Consensus 66 ~w~~Vr~~~-G~~GWV 80 (206)
T PRK10884 66 NYAQIRDSK-GRTAWI 80 (206)
T ss_pred CEEEEEeCC-CCEEeE
Confidence 455554221 123998
No 184
>PLN03121 nucleic acid binding protein; Provisional
Probab=41.34 E-value=45 Score=35.16 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=44.8
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHHHHHhh
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKS 194 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~lek~ 194 (630)
.|++.|-|++.. .+...|++.|+. |.++.-..+..+.+..|++.|.|.. -.+...|+.|...
T Consensus 5 g~TV~V~NLS~~---------tTE~dLrefFS~--~G~I~~V~I~~D~et~gfAfVtF~d-~~aaetAllLnGa 66 (243)
T PLN03121 5 GYTAEVTNLSPK---------ATEKDVYDFFSH--CGAIEHVEIIRSGEYACTAYVTFKD-AYALETAVLLSGA 66 (243)
T ss_pred ceEEEEecCCCC---------CCHHHHHHHHHh--cCCeEEEEEecCCCcceEEEEEECC-HHHHHHHHhcCCC
Confidence 378999999875 367899999998 8876444455556677899999964 4455777765443
No 185
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=41.26 E-value=50 Score=37.60 Aligned_cols=66 Identities=30% Similarity=0.344 Sum_probs=46.2
Q ss_pred EEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCC-CceeEEEEeCCChhhhHHHHHHHhhhhhcC
Q 038527 124 GIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIMFEKSFEVDH 199 (630)
Q Consensus 124 gII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~lek~Fe~~~ 199 (630)
+.|.|||.. =+| +.|++-+++++=...-|..|....| .+|++||+|. +-.+.+-|+.--+-|+..+
T Consensus 47 vfItNIpyd----~rW-----qdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk-~~E~~qKa~E~lnk~~~~G 113 (608)
T KOG4212|consen 47 VFITNIPYD----YRW-----QDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFK-DPENVQKALEKLNKYEVNG 113 (608)
T ss_pred EEEecCcch----hhh-----HhHHHHHHHhcCceEeeeeecccCCCcCCceEEEee-CHHHHHHHHHHhhhccccC
Confidence 779999985 122 5688888885555556677777766 6899999995 5556666666556666544
No 186
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=41.20 E-value=7e+02 Score=29.84 Aligned_cols=35 Identities=23% Similarity=0.150 Sum_probs=25.3
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhh
Q 038527 248 EAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLE 282 (630)
Q Consensus 248 ~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e 282 (630)
-++..+.....|..|++....-..++++||.+..+
T Consensus 27 ~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~e 61 (617)
T PF15070_consen 27 WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSE 61 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455567777777887777777888888877765
No 187
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=41.12 E-value=5.1e+02 Score=28.26 Aligned_cols=100 Identities=22% Similarity=0.325 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHhh----hHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHh
Q 038527 383 AQVHKEEKEKLRRKIIELQKGLDAKQA----LELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEAL 458 (630)
Q Consensus 383 ~e~hkrEKe~~~~kil~LEkqLd~kQ~----LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~ 458 (630)
+..-+.+-.++|++|.+|=.|.++-.. +=-++..++-.-.-|.-+ =.+...+++++++++.....++.+++..
T Consensus 167 i~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~---~ve~~~~~~e~~ee~~~~~~elre~~k~ 243 (294)
T COG1340 167 IDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEE---FVELSKKIDELHEEFRNLQNELRELEKK 243 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334445666778888887776643321 111222233333222221 2345667888888888888888877777
Q ss_pred hHHHHHH-----HhhccHHHHHHHHHHHHhhh
Q 038527 459 NQSLIVR-----ERKSNDELQEARKELINSLK 485 (630)
Q Consensus 459 nq~L~~k-----er~sndElq~ark~li~~l~ 485 (630)
-.+|..+ .|..-++|++-.+++-.-|.
T Consensus 244 ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk 275 (294)
T COG1340 244 IKALRAKEKAAKRREKREELKERAEEIYEKFK 275 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777554 44455667766666655554
No 188
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=40.53 E-value=9.2 Score=46.49 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHH
Q 038527 254 KTSTLVTNLTRTLEVKDMRYKEMEMK 279 (630)
Q Consensus 254 k~~~lv~~L~n~I~~kn~~l~elE~k 279 (630)
+-+..|+.|..+|+.-++....+|-.
T Consensus 128 kh~~~~~eL~eqle~lqk~k~~lEK~ 153 (859)
T PF01576_consen 128 KHQDAVAELNEQLEQLQKQKAKLEKE 153 (859)
T ss_dssp --------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666555555555433
No 189
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.98 E-value=7.1e+02 Score=29.61 Aligned_cols=61 Identities=25% Similarity=0.458 Sum_probs=37.3
Q ss_pred hhHHHhhcccccHHHH---HHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 038527 420 TIQVMKHMREENVEVQ---EKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKEL 480 (630)
Q Consensus 420 ~L~vmKh~~~~d~~~~---~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~l 480 (630)
-|++.|-+.-.+.||- .-+..|+.++.--.+.|+.--+..-.||-+.=+.++--+.|=|-|
T Consensus 493 IlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dElifrdAKkDe~~rkaYK~L 556 (594)
T PF05667_consen 493 ILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELIFRDAKKDEAARKAYKLL 556 (594)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3566666622333433 335677777777777777777777777877777555444444443
No 190
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=39.67 E-value=6.5e+02 Score=29.05 Aligned_cols=152 Identities=22% Similarity=0.291 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHh--HhhhHHHhhhhHHH---HHHHHHHHHHHHHHH--HHHHH
Q 038527 327 TSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMN--ERATLEQKKADEKV---WRLAQVHKEEKEKLR--RKIIE 399 (630)
Q Consensus 327 ~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn--~lA~~EQ~kade~v---lkL~e~hkrEKe~~~--~kil~ 399 (630)
+.+++.|.+-|+.+.-+|.+-.+-+..---++..|.-.. ....+|.|..+.+. -.|.|+++|.+|.+- .+.-.
T Consensus 217 r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReas 296 (502)
T KOG0982|consen 217 RIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREAS 296 (502)
T ss_pred hhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666565553333332222222111110 22233333332111 234455554444332 22222
Q ss_pred HHhc--hhHHhhhHHhHHHhhhhhHHHhhc----ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHH--HHHHhhccH
Q 038527 400 LQKG--LDAKQALELEIEQKRGTIQVMKHM----REENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSL--IVRERKSND 471 (630)
Q Consensus 400 LEkq--Ld~kQ~LELEi~qlkg~L~vmKh~----~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L--~~ker~snd 471 (630)
||++ -..-|.|+-|...|+...--+|.+ .+++.-.-..++.+...|.. +++--.-+|+.| ..+++++--
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~---eq~l~~rm~d~Lrrfq~ekeatq 373 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLIC---EQKLRVRMNDILRRFQEEKEATQ 373 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHH
Confidence 3332 334577788888888776666665 23333344455555555433 333335566666 456666655
Q ss_pred HH-HHHHHHHH
Q 038527 472 EL-QEARKELI 481 (630)
Q Consensus 472 El-q~ark~li 481 (630)
|| .+-||+|-
T Consensus 374 ELieelrkele 384 (502)
T KOG0982|consen 374 ELIEELRKELE 384 (502)
T ss_pred HHHHHHHHHHH
Confidence 54 34555543
No 191
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=39.38 E-value=1.2e+02 Score=29.19 Aligned_cols=88 Identities=23% Similarity=0.330 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038527 324 EKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKG 403 (630)
Q Consensus 324 ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkq 403 (630)
+++..+|.++...+|.-|.||+- +-+++..|..+... ..+-.+-..=..|+...+.++-+|..|
T Consensus 19 ~~l~~~l~~~i~~~d~el~QLef-------q~kr~~~e~~~~~~---------~~~~~i~~q~~~e~~~r~e~k~~l~~q 82 (131)
T PF11068_consen 19 EELLQELQEQIQQLDQELQQLEF-------QGKRMIKEIKKQNA---------QQIQSIQQQFEQEKQERLEQKNQLLQQ 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTTSS---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhcch---------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777778877777764 23333333333211 111112222236677778888899999
Q ss_pred hhHHhhhHHhHHHhhhhhHHHhhc
Q 038527 404 LDAKQALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 404 Ld~kQ~LELEi~qlkg~L~vmKh~ 427 (630)
|.+=+.|+|.-+=..|+++-+=-+
T Consensus 83 l~qv~~L~lgsEv~qg~vE~~v~V 106 (131)
T PF11068_consen 83 LEQVQKLELGSEVVQGQVESFVEV 106 (131)
T ss_dssp HHHHHHS-TT-EEEEEEEEEEEEE
T ss_pred HHHHhcCCCCCEEeeeeeEEEEEE
Confidence 999999998877667776644333
No 192
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.34 E-value=7.9e+02 Score=29.92 Aligned_cols=50 Identities=28% Similarity=0.238 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhcccc
Q 038527 381 RLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMREE 430 (630)
Q Consensus 381 kL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~ 430 (630)
..|.--+-|.+.+.+++-+|++=-+..--||||...|+.+|+=-+...++
T Consensus 275 ~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~ 324 (716)
T KOG4593|consen 275 ETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQE 324 (716)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 35555567899999999999999999999999999999999877776444
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=39.25 E-value=69 Score=33.67 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=30.6
Q ss_pred HHHHHhchhHHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhH
Q 038527 397 IIELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMD 453 (630)
Q Consensus 397 il~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~ 453 (630)
+++|..||+ .|..||.+|+|+++++-| .|+.|.+.-.+-..+|+
T Consensus 56 ~~~l~~ql~---~lq~ev~~LrG~~E~~~~----------~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 56 LTQLQQQLS---DNQSDIDSLRGQIQENQY----------QLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHH---HHHHHHHHHhhHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 467777776 577899999999999988 34455554444444443
No 194
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=39.23 E-value=8.8e+02 Score=30.43 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=45.6
Q ss_pred HhchhHHhhhHHhHHHhhh-hhHHHhhcccccHHHH-------HHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHH
Q 038527 401 QKGLDAKQALELEIEQKRG-TIQVMKHMREENVEVQ-------EKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDE 472 (630)
Q Consensus 401 EkqLd~kQ~LELEi~qlkg-~L~vmKh~~~~d~~~~-------~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndE 472 (630)
.+..+..++|.-||+.+++ +++++..|..|+.... +-+..+..+..--..++.-++.+++.=-.--+.--.|
T Consensus 575 ~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~e 654 (913)
T KOG0244|consen 575 PKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAEKFRQWKDRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEE 654 (913)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 3455677889999999987 4777777744333322 3355555555555566655555554322222222345
Q ss_pred HHHHHHHH
Q 038527 473 LQEARKEL 480 (630)
Q Consensus 473 lq~ark~l 480 (630)
.-.|+|.|
T Consensus 655 as~~~krl 662 (913)
T KOG0244|consen 655 ASAANKRL 662 (913)
T ss_pred HHHHHHHH
Confidence 55666653
No 195
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=38.98 E-value=12 Score=27.22 Aligned_cols=17 Identities=29% Similarity=0.743 Sum_probs=12.4
Q ss_pred cCCeeeccCCCCCCccc
Q 038527 36 SETAYRCPFCRGKKETD 52 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~ 52 (630)
....|+||.|+..+..|
T Consensus 14 ~~~~~~CP~Cg~~~~~F 30 (33)
T cd00350 14 EEAPWVCPVCGAPKDKF 30 (33)
T ss_pred CcCCCcCcCCCCcHHHc
Confidence 34789999998665544
No 196
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=38.66 E-value=4.4e+02 Score=26.83 Aligned_cols=106 Identities=17% Similarity=0.199 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH----HHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHH
Q 038527 311 SAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNE----TERKKLHSEKIMNERATLEQKKADEKVWRLAQVH 386 (630)
Q Consensus 311 ~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~----~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~h 386 (630)
....++.++..........|+.-++..+..|++++....++. .+-.|++... +-+..+-.+++.+....+++.
T Consensus 104 ~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~---~k~~~~~~~~~~~Y~~~v~~~ 180 (236)
T cd07651 104 KIQSHMEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKL---NKAQSSINSSRRDYQNAVKAL 180 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666677778888888888888887655432 1222222222 334555566777777777766
Q ss_pred HHHHHHHHHHHHHHHhchhHHhhhHHh-HHHhhhhhH
Q 038527 387 KEEKEKLRRKIIELQKGLDAKQALELE-IEQKRGTIQ 422 (630)
Q Consensus 387 krEKe~~~~kil~LEkqLd~kQ~LELE-i~qlkg~L~ 422 (630)
..-+......+ ..-++.=|.||-+ |+.|+..|.
T Consensus 181 ~~~~~~~~~~~---~~~~~~~Q~lEe~Ri~~lk~~l~ 214 (236)
T cd07651 181 RELNEIWNREW---KAALDDFQDLEEERIQFLKSNCW 214 (236)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444433333 2234444444433 555555443
No 197
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=38.40 E-value=3.8e+02 Score=26.01 Aligned_cols=66 Identities=20% Similarity=0.194 Sum_probs=51.4
Q ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 254 KTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTM-EQMDEMNKSRNEEIRKMQQSAHDHFQKI 319 (630)
Q Consensus 254 k~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~m-eEk~~l~~~yneE~~kmQ~~a~~~~~~i 319 (630)
.+..+|.++...........+.-+..|++++.+|++|+ .-.+...-++-.-|+-+|..-+...++|
T Consensus 54 ~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki 120 (146)
T PF08702_consen 54 EAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQPSNIRVLQNILRSNRQKI 120 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHH
Confidence 45667777777777777677777889999999999999 7778888888888888877666666555
No 198
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=38.15 E-value=3.6e+02 Score=25.60 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhh
Q 038527 319 IYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKL 358 (630)
Q Consensus 319 i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl 358 (630)
.-..+++|+.+++...+++..-......+..........+
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666665555554444444443333333333
No 199
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=37.72 E-value=18 Score=24.91 Aligned_cols=14 Identities=36% Similarity=1.156 Sum_probs=11.1
Q ss_pred ecCCeeeccCCCCC
Q 038527 35 VSETAYRCPFCRGK 48 (630)
Q Consensus 35 ~~~~~~~CP~C~~k 48 (630)
.++.+|.||+|+..
T Consensus 10 ~~~k~~~C~~C~k~ 23 (26)
T PF13465_consen 10 TGEKPYKCPYCGKS 23 (26)
T ss_dssp SSSSSEEESSSSEE
T ss_pred CCCCCCCCCCCcCe
Confidence 46788999999743
No 200
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.07 E-value=7.2e+02 Score=28.56 Aligned_cols=45 Identities=7% Similarity=0.017 Sum_probs=27.2
Q ss_pred hhhhhhCCC-CcChhhHHHhhhhhhhhHHHHHHHHHHHHhhhHHHH
Q 038527 232 GDHLRKNGD-LKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEM 276 (630)
Q Consensus 232 g~~Lrk~gd-LKTv~ei~~E~~rk~~~lv~~L~n~I~~kn~~l~el 276 (630)
..|+..-|- ==|+.|+..-+++.+.-+++-+-|-+-=....+...
T Consensus 88 ~~Fl~~i~v~dF~~~DLlkPes~Rtq~~LSavvNfa~fRe~k~~~~ 133 (446)
T KOG4438|consen 88 DMFLMNIGVLDFSFKDLLKPESSRTQRFLSAVVNFALFREEKMDLY 133 (446)
T ss_pred HHHHHhcCcCCCchhhhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444442 246778888888888888887776654444333333
No 201
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=36.04 E-value=23 Score=26.90 Aligned_cols=16 Identities=19% Similarity=0.634 Sum_probs=11.7
Q ss_pred eEEecCCeeeccCCCC
Q 038527 32 KVEVSETAYRCPFCRG 47 (630)
Q Consensus 32 kVk~~~~~~~CP~C~~ 47 (630)
+|...+++|.||||..
T Consensus 17 ~~~~~~~~w~C~~C~~ 32 (40)
T PF04810_consen 17 QFDDGGKTWICNFCGT 32 (40)
T ss_dssp EEETTTTEEEETTT--
T ss_pred eEcCCCCEEECcCCCC
Confidence 5666778999999975
No 202
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=35.84 E-value=1.5e+02 Score=35.16 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc
Q 038527 378 KVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 378 ~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~ 427 (630)
...+.+++++|=++-+.-.+.+||- .+|+|.-||++++-+++-.|..
T Consensus 76 s~~r~~~e~~RI~~sVs~EL~ele~---krqel~seI~~~n~kiEelk~~ 122 (907)
T KOG2264|consen 76 SIGRILREQKRILASVSLELTELEV---KRQELNSEIEEINTKIEELKRL 122 (907)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhHHHHHHHHHHHHHHH
Confidence 4567789999999999988988875 3699999999998777766654
No 203
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=35.51 E-value=4.7e+02 Score=26.22 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 038527 255 TSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRN---EEIRKMQQSAHDH 315 (630)
Q Consensus 255 ~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yn---eE~~kmQ~~a~~~ 315 (630)
.+.+|+.+.+-...-+.++.+|+..+.....++..+|-...++-..|. .++.+.+..|..-
T Consensus 14 ~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~A 77 (221)
T PF04012_consen 14 INELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELA 77 (221)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556665666778899999999999999999999988766665544 4444444444433
No 204
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=35.40 E-value=1.6e+02 Score=24.86 Aligned_cols=53 Identities=21% Similarity=0.339 Sum_probs=35.8
Q ss_pred HHHhchhHHhhhHHhHHHhhhhhHHHhhc-ccccHHHHHHHHHHHHHHHHHHhhhHHH
Q 038527 399 ELQKGLDAKQALELEIEQKRGTIQVMKHM-REENVEVQEKMDAIIKEIKEKEGEMDVV 455 (630)
Q Consensus 399 ~LEkqLd~kQ~LELEi~qlkg~L~vmKh~-~~~d~~~~~k~~~l~~~l~ek~~~l~~~ 455 (630)
-|+-+..+||.+.-|+...+........- .+ .-.+..+|..++.....+|+.+
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqe----aE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQE----AEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 47788899999999999998766555543 22 2345566666666666666543
No 205
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=35.39 E-value=3.5e+02 Score=28.35 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=15.3
Q ss_pred cccceeecCCCCChHHHHHH
Q 038527 491 ATIGVKRMGEIDNRPFLAAA 510 (630)
Q Consensus 491 ~~IgiKrmGeld~~~f~~ac 510 (630)
...+| -|-.+|..||+..|
T Consensus 160 ~~~~~-flsq~~l~~Y~~~e 178 (256)
T PF14932_consen 160 QNPPV-FLSQMPLEQYLSQE 178 (256)
T ss_pred CCCCc-hhhhCCHHHHHHHH
Confidence 45666 88899999999876
No 206
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=35.37 E-value=6.2e+02 Score=27.57 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH---HHHhhHHHHHH
Q 038527 294 MDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNET---ERKKLHSEKIM 364 (630)
Q Consensus 294 k~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~---er~kl~~E~~k 364 (630)
-++..++--++|.---|..+.....+--+--.|-..||.++.||+.-.+.|+.++.--.. +=.+.++|.+|
T Consensus 106 ~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqk 179 (338)
T KOG3647|consen 106 VEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQK 179 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 355555555555555555666666666666667777777777777777777777665543 33344555555
No 207
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=34.97 E-value=2.8e+02 Score=28.06 Aligned_cols=55 Identities=20% Similarity=0.408 Sum_probs=34.7
Q ss_pred hHHHHHhhHHHHHHHhhccHH------HHHHHHHHHHhhhccCCccccceeecCC---CCChHHHHHHHh
Q 038527 452 MDVVEALNQSLIVRERKSNDE------LQEARKELINSLKEGRTRATIGVKRMGE---IDNRPFLAAAKA 512 (630)
Q Consensus 452 l~~~e~~nq~L~~ker~sndE------lq~ark~li~~l~~~~~~~~IgiKrmGe---ld~~~f~~ac~~ 512 (630)
|..+++|..+|..-.-.++.+ ++-.++.|++.|.. -||+.+|. .=.--||.|...
T Consensus 93 LpviDnlerAl~~~~~~~d~~~~l~~Gvem~~~~l~~~L~k------~Gv~~i~~~Ge~FDP~~HeAv~~ 156 (193)
T COG0576 93 LPVIDNLERALEAAEDDKDPEKALLEGVEMTLDQLLDALEK------LGVEEIGPEGEKFDPNLHEAVQR 156 (193)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHH------CCCEEeCCCCCCCCHHHhhheee
Confidence 677788888887755555544 77777777777764 45555544 322345666544
No 208
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=34.83 E-value=48 Score=33.02 Aligned_cols=11 Identities=18% Similarity=0.311 Sum_probs=9.3
Q ss_pred HHHHHHHhhhh
Q 038527 273 YKEMEMKYLET 283 (630)
Q Consensus 273 l~elE~k~~e~ 283 (630)
|++||.+||..
T Consensus 2 LeD~EsklN~A 12 (166)
T PF04880_consen 2 LEDFESKLNQA 12 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67899999876
No 209
>PRK10698 phage shock protein PspA; Provisional
Probab=34.61 E-value=5.3e+02 Score=26.55 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 293 QMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQL 344 (630)
Q Consensus 293 Ek~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L 344 (630)
+=.+++..|-.||+.--..++..+.+++-....+..+++......+.|..+-
T Consensus 24 DP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA 75 (222)
T PRK10698 24 DPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKA 75 (222)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555666555555566666666666666666555555555554443
No 210
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=34.35 E-value=23 Score=27.38 Aligned_cols=11 Identities=45% Similarity=1.210 Sum_probs=8.7
Q ss_pred CeeeccCCCCC
Q 038527 38 TAYRCPFCRGK 48 (630)
Q Consensus 38 ~~~~CP~C~~k 48 (630)
..++||+|++.
T Consensus 20 ~~~~Cp~CG~~ 30 (46)
T PRK00398 20 TGVRCPYCGYR 30 (46)
T ss_pred CceECCCCCCe
Confidence 37999999753
No 211
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.60 E-value=5.7e+02 Score=26.60 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHhhHHHHHHh
Q 038527 335 MQLEEHEKQLQYREAKNETERKKLHSEKIMN 365 (630)
Q Consensus 335 ~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn 365 (630)
.-++.|+--+++.-++-+.+-.++.+.+++.
T Consensus 22 ~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~ 52 (218)
T KOG1655|consen 22 DSVNKRSDSVEKKISKLDAELCKYKDQIKKT 52 (218)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345555555555555555666666666653
No 212
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=33.59 E-value=6.1e+02 Score=26.92 Aligned_cols=109 Identities=30% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHH
Q 038527 285 TYLDLTMEQMDEMNKSRNEEIRKM---QQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSE 361 (630)
Q Consensus 285 ~sL~r~meEk~~l~~~yneE~~km---Q~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E 361 (630)
.++...+-..++-+.....++... ...+....+..-+........++.+.+.++.+.++|.. +-+.+|+.+..|
T Consensus 186 ~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~e---kme~e~~~~~~e 262 (297)
T PF02841_consen 186 ESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLKE---KMEEEREQLLQE 262 (297)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q ss_pred HHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 362 KIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQ 401 (630)
Q Consensus 362 ~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LE 401 (630)
.+. +-+.+-.+..--|.+.++++-+.+...|..|+
T Consensus 263 ~e~-----~l~~k~~eq~~~l~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 263 QER-----LLEQKLQEQEELLKEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHH-----HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 213
>PRK01156 chromosome segregation protein; Provisional
Probab=33.49 E-value=9.7e+02 Score=29.24 Aligned_cols=10 Identities=20% Similarity=-0.007 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 038527 331 EAQKMQLEEH 340 (630)
Q Consensus 331 e~k~~eL~~r 340 (630)
++...+|+..
T Consensus 262 e~~l~el~~~ 271 (895)
T PRK01156 262 ESDLSMELEK 271 (895)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 214
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=33.45 E-value=18 Score=28.78 Aligned_cols=14 Identities=29% Similarity=0.828 Sum_probs=8.5
Q ss_pred CeeeccCCCCCCcc
Q 038527 38 TAYRCPFCRGKKET 51 (630)
Q Consensus 38 ~~~~CP~C~~kkK~ 51 (630)
..|+||.|...|.+
T Consensus 33 ~~w~CP~C~a~K~~ 46 (47)
T PF00301_consen 33 DDWVCPVCGAPKSD 46 (47)
T ss_dssp TT-B-TTTSSBGGG
T ss_pred CCCcCcCCCCcccc
Confidence 34999999876544
No 215
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.22 E-value=3.1e+02 Score=23.48 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 262 LTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHE 341 (630)
Q Consensus 262 L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~ 341 (630)
|...|..-..++.-+..++.....-+..+..|++.... .+...+.++.+|+.+++...++|+..-
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~---------------~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAER---------------QLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HH
Q 038527 342 KQ 343 (630)
Q Consensus 342 k~ 343 (630)
.|
T Consensus 68 ~~ 69 (69)
T PF14197_consen 68 AQ 69 (69)
T ss_pred cC
No 216
>CHL00077 rps18 ribosomal protein S18
Probab=33.07 E-value=69 Score=28.84 Aligned_cols=49 Identities=20% Similarity=0.152 Sum_probs=30.0
Q ss_pred eeccCCCCCCccccchHHHHhhhhccCC---CCCcChHHHHhhHHHHHHHHhh
Q 038527 40 YRCPFCRGKKETDYLYKELLQHASDVGR---SRSRGAREKAQHLALEKYVSKY 89 (630)
Q Consensus 40 ~~CP~C~~kkK~~y~~~~LLqHA~gvg~---s~~r~ak~ka~HlaLak~L~~d 89 (630)
=.||||++.. =||.=-.||++=.+..| ++..+.--...|+.|+++++.-
T Consensus 18 k~~~~~~~~~-iDYKnv~lL~~Fis~~GkIlpRriTGl~~K~QR~l~~aIKrA 69 (86)
T CHL00077 18 RLPPIQSGDR-IDYKNMSLLSRFISEQGKILSRRVTRLTLKQQRLITKAIKQA 69 (86)
T ss_pred CCCCCCCCCc-CCccCHHHHHHhcCCCCeEcCcccCCcCHHHHHHHHHHHHHH
Confidence 3499999753 35544456666333222 2234445677889999998863
No 217
>PRK14143 heat shock protein GrpE; Provisional
Probab=32.98 E-value=6.1e+02 Score=26.73 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhccCCccccceeecCCC
Q 038527 474 QEARKELINSLKEGRTRATIGVKRMGEI 501 (630)
Q Consensus 474 q~ark~li~~l~~~~~~~~IgiKrmGel 501 (630)
+-..+.|.+.|. ..||++|+-+
T Consensus 152 e~i~k~l~~~L~------k~GV~~i~~~ 173 (238)
T PRK14143 152 QGLYKQLVDVLK------RLGVSPMRVV 173 (238)
T ss_pred HHHHHHHHHHHH------HCCCeeeCCC
Confidence 344667777776 4788888764
No 218
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=32.97 E-value=5.2e+02 Score=26.00 Aligned_cols=98 Identities=18% Similarity=0.290 Sum_probs=56.7
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhh----------------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 247 KEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLET----------------STYLDLTMEQMDEMNKSRNEEIRKMQQ 310 (630)
Q Consensus 247 i~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~----------------~~sL~r~meEk~~l~~~yneE~~kmQ~ 310 (630)
--+|+.+....+|+-|-++|..-.++..+||...... +..|..++.--+. -+.-++++..+-.
T Consensus 6 a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeE-EqqR~~~L~qvN~ 84 (182)
T PF15035_consen 6 AYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEE-EQQRSEELAQVNA 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHH-HHHhHHHHHHHHH
Confidence 4467888999999999999999999999999988543 1222221100000 0223444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 311 SAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQ 345 (630)
Q Consensus 311 ~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~ 345 (630)
.-|++....-..|+.|..+|..-..++..=..+|.
T Consensus 85 lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 85 LLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554444444333333
No 219
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=32.81 E-value=6.8e+02 Score=27.28 Aligned_cols=116 Identities=18% Similarity=0.327 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 038527 318 KIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKI 397 (630)
Q Consensus 318 ~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~ki 397 (630)
+++...+.|..+|+...+|=.-|.=+|+-++|--.-.++|.+.++ ++.+++.. ..-.++...+
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek--~e~s~LkR--Enq~l~e~c~------------- 77 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEK--NEYSALKR--ENQSLMESCE------------- 77 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh--hhhhhhhh--hhhhHHHHHH-------------
Confidence 344445566677777777777777788888777666666655443 34455431 1122222332
Q ss_pred HHHHhchhHHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 038527 398 IELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEA 457 (630)
Q Consensus 398 l~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~ 457 (630)
.||+ .+|+|.-+++--.+++.++.-- -+-.|+.|+.|+.+|.-...+|+....
T Consensus 78 -~lek---~rqKlshdlq~Ke~qv~~lEgQ---l~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 78 -NLEK---TRQKLSHDLQVKESQVNFLEGQ---LNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred -HHHH---HHHHhhHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 3444444444333333333221 123466788888888888888765543
No 220
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=32.49 E-value=20 Score=28.67 Aligned_cols=11 Identities=45% Similarity=1.162 Sum_probs=8.5
Q ss_pred eeccCCCCCCc
Q 038527 40 YRCPFCRGKKE 50 (630)
Q Consensus 40 ~~CP~C~~kkK 50 (630)
-.||||++...
T Consensus 2 kPCPfCGg~~~ 12 (53)
T TIGR03655 2 KPCPFCGGADV 12 (53)
T ss_pred CCCCCCCCcce
Confidence 36999988755
No 221
>PRK09343 prefoldin subunit beta; Provisional
Probab=32.41 E-value=4.2e+02 Score=24.73 Aligned_cols=79 Identities=18% Similarity=0.339 Sum_probs=42.3
Q ss_pred hHHhhhHHhHHHhhhhhHHHhhcccccHHHHHH---------HHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHH
Q 038527 405 DAKQALELEIEQKRGTIQVMKHMREENVEVQEK---------MDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQE 475 (630)
Q Consensus 405 d~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k---------~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ 475 (630)
.++|.|+.++.+....+.=+..+ ++|+.|.+- .+++..+|.++.+-+ +.--.+|..++..-...+.+
T Consensus 28 ~q~~~le~q~~e~~~~~~EL~~L-~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i---e~~ik~lekq~~~l~~~l~e 103 (121)
T PRK09343 28 QQKSQIDLELREINKALEELEKL-PDDTPIYKIVGNLLVKVDKTKVEKELKERKELL---ELRSRTLEKQEKKLREKLKE 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 45666676666666666666665 234444443 345555554444433 34445555555555556666
Q ss_pred HHHHHHHhhhcc
Q 038527 476 ARKELINSLKEG 487 (630)
Q Consensus 476 ark~li~~l~~~ 487 (630)
.+..|-.-+...
T Consensus 104 ~q~~l~~ll~~~ 115 (121)
T PRK09343 104 LQAKINEMLSKY 115 (121)
T ss_pred HHHHHHHHHHhc
Confidence 666655555543
No 222
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=31.80 E-value=4.9e+02 Score=31.21 Aligned_cols=82 Identities=10% Similarity=0.116 Sum_probs=65.1
Q ss_pred hhHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 245 SGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQ------MDEMNKSRNEEIRKMQQSAHDHFQK 318 (630)
Q Consensus 245 ~ei~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meE------k~~l~~~yneE~~kmQ~~a~~~~~~ 318 (630)
.+......++-.+-|.-|...|....+.++.+|.......+++.+|..+ +.-|+++|+.-.+.-+...+++.++
T Consensus 74 ~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~r 153 (632)
T PF14817_consen 74 RENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKR 153 (632)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444446677899999999999999999999999999999999876 4778899999888888888888887
Q ss_pred HHHHHHHH
Q 038527 319 IYLEHEKA 326 (630)
Q Consensus 319 i~~e~ekl 326 (630)
|-.--+.+
T Consensus 154 l~~~~~~~ 161 (632)
T PF14817_consen 154 LQGQVEQL 161 (632)
T ss_pred HHHHHHHH
Confidence 75554443
No 223
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=31.67 E-value=16 Score=44.60 Aligned_cols=82 Identities=28% Similarity=0.283 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 038527 284 STYLDLTMEQMDEMNKSRNEEIRKMQQSA-------HDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERK 356 (630)
Q Consensus 284 ~~sL~r~meEk~~l~~~yneE~~kmQ~~a-------~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~ 356 (630)
..+|++.|++-..-|++--.+|++=+..+ -++.++.-...++-+..|+....+|......+.+--+.++.-++
T Consensus 104 l~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K 183 (859)
T PF01576_consen 104 LAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRK 183 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 34666666665555555555555444333 23444555555555666666666666666666555555555556
Q ss_pred hhHHHHHHh
Q 038527 357 KLHSEKIMN 365 (630)
Q Consensus 357 kl~~E~~kn 365 (630)
+++.++...
T Consensus 184 ~lE~qL~El 192 (859)
T PF01576_consen 184 QLEAQLNEL 192 (859)
T ss_dssp ---------
T ss_pred hHHHHHHHH
Confidence 665555443
No 224
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=31.57 E-value=4.4e+02 Score=24.73 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=11.7
Q ss_pred chhHHhhhHHhHHHhhhhhHHHhhc
Q 038527 403 GLDAKQALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 403 qLd~kQ~LELEi~qlkg~L~vmKh~ 427 (630)
.+..=+.+-+.|+......+|++.|
T Consensus 63 ~~~~l~~~~~~ie~a~~~~~v~~al 87 (171)
T PF03357_consen 63 QLSNLESVLLQIETAQSNQQVVKAL 87 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555555555555555
No 225
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=31.38 E-value=5.5e+02 Score=25.74 Aligned_cols=40 Identities=28% Similarity=0.400 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 038527 434 VQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKEL 480 (630)
Q Consensus 434 ~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~l 480 (630)
+..+++.|..+++....++..++.=-++|+ .=+..||+-.
T Consensus 116 l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~-------~Im~RARkl~ 155 (161)
T TIGR02894 116 LQKRNEELEKELEKLRQRLSTIEEDYQTLI-------DIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 445666666666666666666666666665 3455566643
No 226
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=31.23 E-value=1.9e+02 Score=31.43 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhchhHHhhhHHhHHHh
Q 038527 387 KEEKEKLRRKIIELQKGLDAKQALELEIEQK 417 (630)
Q Consensus 387 krEKe~~~~kil~LEkqLd~kQ~LELEi~ql 417 (630)
|..+.++..+|.+||++|.+||+=||+-..+
T Consensus 44 k~~rK~~~~~~~~le~el~qkH~kEL~~~~~ 74 (302)
T KOG2606|consen 44 KKKRKELTEDIAKLEKELSQKHKKELEKLKL 74 (302)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhcc
Confidence 3445678889999999999999999998887
No 227
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.97 E-value=7e+02 Score=26.85 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 038527 258 LVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQ-------MDEMNKSRNEEIRKMQQS 311 (630)
Q Consensus 258 lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meE-------k~~l~~~yneE~~kmQ~~ 311 (630)
-|..|-++|+..+...+++..+.++....+.+.-.+ .......|.+-+|.||.-
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~n 113 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVN 113 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444455555544444444444443333333322 233334455555666554
No 228
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=30.76 E-value=1e+03 Score=28.71 Aligned_cols=148 Identities=18% Similarity=0.161 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHhHh
Q 038527 292 EQMDEMNKSRNEEIRKMQQSAH-DHFQKIYLEHEKATSQLEA---QKMQLEEHEKQLQYREAKNETERKKLHSEKIMNER 367 (630)
Q Consensus 292 eEk~~l~~~yneE~~kmQ~~a~-~~~~~i~~e~ekl~~eLe~---k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn~l 367 (630)
||--++|.++-.||..--..+- ..+-.+|- +.+..|=. ==..+++-.+-|+.+.+-++--++||++=-.+.+
T Consensus 244 eel~klHt~ll~ei~~sv~v~~~qtl~qVFi---kyker~liYG~YCS~~e~a~k~ln~llktrEdv~~kleEct~r~n- 319 (865)
T KOG2996|consen 244 EELNKLHTALLAEIEYSVKVAGGQTLYQVFI---KYKERLLIYGKYCSNVESARKLLNELLKTREDVSRKLEECTARAN- 319 (865)
T ss_pred HHHHHHHHHHHHHhHHHhhCCCcccHHHHHH---HHHHHHhhhhhhhccchHHHHHHHHHHHHhHHHHHHHHHHHhhhc-
Confidence 5678888888888865433322 11222221 11111110 0122334455667777777777777764322210
Q ss_pred hhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc-c--cc---cHHHHHHHHHH
Q 038527 368 ATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHM-R--EE---NVEVQEKMDAI 441 (630)
Q Consensus 368 A~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~-~--~~---d~~~~~k~~~l 441 (630)
-.|-.-+-| |+---+ -.-|-.-|=|+|-.+-.+-.|-++|+..|+||+-+ . .| |-+..+.|+++
T Consensus 320 ----ngkF~l~DL-L~VPmQ-----RvlKYhLLLkEL~kht~~a~ek~~LkeAleaM~Dla~yiNEvkRD~etlr~I~ef 389 (865)
T KOG2996|consen 320 ----NGKFTLRDL-LVVPMQ-----RVLKYHLLLKELVKHTDEASEKRNLKEALEAMEDLAQYINEVKRDNETLRVIDEF 389 (865)
T ss_pred ----CCceeecee-eeeeHH-----HHHHHHHHHHHHHHhcccCChhhhHHHHHHHHHHHHHHHhHhhcchHHHHHHHHH
Confidence 000000000 000000 01222334456666667778888999999999986 1 22 44556666666
Q ss_pred HHHHHHHHhhhHHHHHhhHHHH
Q 038527 442 IKEIKEKEGEMDVVEALNQSLI 463 (630)
Q Consensus 442 ~~~l~ek~~~l~~~e~~nq~L~ 463 (630)
+- ..++|+|-|-
T Consensus 390 q~----------SIenL~~pl~ 401 (865)
T KOG2996|consen 390 QL----------SIENLSQPLH 401 (865)
T ss_pred HH----------hHHhhcchHH
Confidence 53 3467777764
No 229
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=30.53 E-value=26 Score=28.66 Aligned_cols=15 Identities=53% Similarity=1.225 Sum_probs=11.1
Q ss_pred eEEecCCeeeccCCC
Q 038527 32 KVEVSETAYRCPFCR 46 (630)
Q Consensus 32 kVk~~~~~~~CP~C~ 46 (630)
+...+.-+|+||+|+
T Consensus 37 ~~~~~~i~y~C~~Cg 51 (54)
T PF10058_consen 37 KEEFEEIQYRCPYCG 51 (54)
T ss_pred cccCCceEEEcCCCC
Confidence 344455689999997
No 230
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=30.49 E-value=26 Score=33.53 Aligned_cols=13 Identities=23% Similarity=0.833 Sum_probs=10.2
Q ss_pred cCCeeeccCCCCC
Q 038527 36 SETAYRCPFCRGK 48 (630)
Q Consensus 36 ~~~~~~CP~C~~k 48 (630)
+++.|.||.|++.
T Consensus 120 ~~~~f~Cp~Cg~~ 132 (147)
T smart00531 120 MDGTFTCPRCGEE 132 (147)
T ss_pred CCCcEECCCCCCE
Confidence 3567999999864
No 231
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=30.49 E-value=87 Score=29.85 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=40.7
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.+.|-|++.. .+...|++.|.. |.++ .+.+..++ .-+.|++.|.|.+. ..-..|+.
T Consensus 36 ~lfVgnL~~~---------~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~kGfaFV~F~~~-e~A~~Al~ 94 (144)
T PLN03134 36 KLFIGGLSWG---------TDDASLRDAFAH--FGDVVDAKVIVDRETGRSRGFGFVNFNDE-GAATAAIS 94 (144)
T ss_pred EEEEeCCCCC---------CCHHHHHHHHhc--CCCeEEEEEEecCCCCCcceEEEEEECCH-HHHHHHHH
Confidence 4668888764 367899999999 8774 45555543 34789999999865 66666665
No 232
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=30.33 E-value=33 Score=23.63 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=15.9
Q ss_pred eeeccCCCCCCccccchHHHHhhh
Q 038527 39 AYRCPFCRGKKETDYLYKELLQHA 62 (630)
Q Consensus 39 ~~~CP~C~~kkK~~y~~~~LLqHA 62 (630)
...||.|+++ +....|..|.
T Consensus 2 l~~C~~CgR~----F~~~~l~~H~ 21 (25)
T PF13913_consen 2 LVPCPICGRK----FNPDRLEKHE 21 (25)
T ss_pred CCcCCCCCCE----ECHHHHHHHH
Confidence 4679999977 6888888884
No 233
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=30.07 E-value=6.2e+02 Score=25.93 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 258 LVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQS 311 (630)
Q Consensus 258 lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~ 311 (630)
|=..+..+...-...-++|.+.|...+.-|...+-++.+....-+.++..|..+
T Consensus 23 L~~q~~~~~~~i~~~r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~ 76 (206)
T PF14988_consen 23 LWKQYIQQLEEIQRERQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEF 76 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333344444444455556666666666666665555555555555555554433
No 234
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=29.94 E-value=21 Score=31.30 Aligned_cols=13 Identities=31% Similarity=0.953 Sum_probs=4.5
Q ss_pred ecCCeeeccCCCC
Q 038527 35 VSETAYRCPFCRG 47 (630)
Q Consensus 35 ~~~~~~~CP~C~~ 47 (630)
-....|.||||..
T Consensus 18 ~l~~~F~CPfC~~ 30 (81)
T PF05129_consen 18 KLPKVFDCPFCNH 30 (81)
T ss_dssp --SS----TTT--
T ss_pred CCCceEcCCcCCC
Confidence 3568999999983
No 235
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=29.27 E-value=2.1e+02 Score=28.60 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=29.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 038527 370 LEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDA 406 (630)
Q Consensus 370 ~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~ 406 (630)
.-.++||+=|.-=.=.|.||.|++...|..||..+..
T Consensus 107 ~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 107 QLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777666668999999999999999887765
No 236
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=29.07 E-value=1.1e+03 Score=28.32 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhhCCCCcChhhHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 235 LRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHD 314 (630)
Q Consensus 235 Lrk~gdLKTv~ei~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~ 314 (630)
++..-....-.++......+..-.+.-..--|+.-.--..+.+.+|.++-.+|.+...++|..+..-++.+.++++-..+
T Consensus 374 ~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~ 453 (607)
T KOG0240|consen 374 WRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLD 453 (607)
T ss_pred hcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHh----HhhhHHHhhhhHHHHHHHHHHHHHH
Q 038527 315 HFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMN----ERATLEQKKADEKVWRLAQVHKEEK 390 (630)
Q Consensus 315 ~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn----~lA~~EQ~kade~vlkL~e~hkrEK 390 (630)
+- .-+-+.++.++.-..++..++. +.+..+.+ .++.. +||..-+++-.+..-++-..
T Consensus 454 qe-----------e~~s~~~~~~e~~q~e~~~~Q~--~~e~~~~e-~~e~~~al~el~~~~~~~~~~~~~~~~~n----- 514 (607)
T KOG0240|consen 454 QE-----------ELLSSTRRLYEDIQQELSEIQE--ENEAAKDE-VKEVLTALEELAVNYDQKSEEKESKLSQN----- 514 (607)
T ss_pred HH-----------hhhhhhHHHHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHhhhhhhh-----
Q ss_pred HHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHH
Q 038527 391 EKLRRKIIELQKGLDAKQALELEIEQKRGTIQV 423 (630)
Q Consensus 391 e~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~v 423 (630)
++-||++|+...+.
T Consensus 515 -------------------~~sel~sl~~~~~~ 528 (607)
T KOG0240|consen 515 -------------------LKSELQSLQEPSEH 528 (607)
T ss_pred -------------------hHHHHHhhhhcccc
No 237
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=29.00 E-value=1.3e+02 Score=29.59 Aligned_cols=92 Identities=13% Similarity=0.171 Sum_probs=44.5
Q ss_pred cChhhHHHhhhhhhhhHHHHHHHHHHHHhhhHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 242 KTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKE----MEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQ 317 (630)
Q Consensus 242 KTv~ei~~E~~rk~~~lv~~L~n~I~~kn~~l~e----lE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~ 317 (630)
++..|+...-..-++.++.+|.+.+......++. ++.........|.++.++-.+-|..-.+-..+++.....-++
T Consensus 23 ~~~~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pev~~qa~~l~e~lQ~~vq 102 (155)
T PF07464_consen 23 QNQQEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPEVEKQANELQEKLQSAVQ 102 (155)
T ss_dssp --SS-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHHHHHT-SSSHHHHHHHHH
T ss_pred CcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 4445554444445555555555555444444433 444455555555555544333344444444445555555566
Q ss_pred HHHHHHHHHHHHHHHH
Q 038527 318 KIYLEHEKATSQLEAQ 333 (630)
Q Consensus 318 ~i~~e~ekl~~eLe~k 333 (630)
.++.+-+++-.+|.+.
T Consensus 103 ~l~~E~qk~~k~v~~~ 118 (155)
T PF07464_consen 103 SLVQESQKLAKEVSEN 118 (155)
T ss_dssp HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666665555543
No 238
>PTZ00332 paraflagellar rod protein; Provisional
Probab=28.76 E-value=1e+03 Score=28.05 Aligned_cols=130 Identities=15% Similarity=0.221 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 038527 290 TMEQMDEMNKSRNEEIRKMQQS-----------------AHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNE 352 (630)
Q Consensus 290 ~meEk~~l~~~yneE~~kmQ~~-----------------a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~ 352 (630)
|.+-+..+.+++.+.+.++|.. -++.+.+.|++|+....+-=+++.+|+.+-+.|.
T Consensus 265 ~~daK~R~~~~CE~Dl~~i~d~iq~~~~eDa~~~KRy~a~k~~Se~f~~~N~e~Qe~~wnrI~eLer~Lq~l~------- 337 (589)
T PTZ00332 265 MKDAKRRLKQRCETDLKHIHDAIQKADLEDAEAMKRYATNKEKSERFIRENEDRQEEAWNKIQDLERQLQRLG------- 337 (589)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3445666666666666666543 2456788888888888887788888887666665
Q ss_pred HHHHhhHHHHHHhHhhhHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc---
Q 038527 353 TERKKLHSEKIMNERATLEQKK--ADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHM--- 427 (630)
Q Consensus 353 ~er~kl~~E~~kn~lA~~EQ~k--ade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~--- 427 (630)
.+|...-+.+ .++..-|.++ +-+..+..+..|+ |.|++-|.-.-+-+.+.-.|
T Consensus 338 ~eR~~eV~rR--Ie~~~rEekRr~~yeqFl~~asQHk--------------------qrL~~tv~Ncd~a~~~~~~lee~ 395 (589)
T PTZ00332 338 TERFEEVKRR--IEENDREEKRRVEYQQFLEVAGQHK--------------------KLLELTVYNCDLALRCTGLVEEL 395 (589)
T ss_pred HHHHHHHHHH--HHHHHHHHHhHhHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333221110 0122222222 1245555666555 68888888888888777666
Q ss_pred -ccccHHHHHHHHHHHHHHHHH
Q 038527 428 -REENVEVQEKMDAIIKEIKEK 448 (630)
Q Consensus 428 -~~~d~~~~~k~~~l~~~l~ek 448 (630)
.+.=+.|+.+.+.+...|.+.
T Consensus 396 V~egc~~i~~r~DK~~q~L~el 417 (589)
T PTZ00332 396 VSEGCAAVKARHDKTNQDLAAL 417 (589)
T ss_pred HHHHHHHHHHHHhhhHHHHHHH
Confidence 222234566666666655554
No 239
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.74 E-value=1.1e+03 Score=28.23 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=21.3
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhh
Q 038527 248 EAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLE 282 (630)
Q Consensus 248 ~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e 282 (630)
+.++...-.+.++.|.++|+..+-...++|.+..+
T Consensus 306 kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~E 340 (581)
T KOG0995|consen 306 KEEEIEKLQKENDELKKQIELQGISGEDVERMNLE 340 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 33444455677788888887766665555554433
No 240
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=28.70 E-value=5.6e+02 Score=24.99 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 038527 299 KSRNEEIRKMQQSAHDHFQKIYLEHEKAT---SQLEAQKMQLEEHEKQLQY 346 (630)
Q Consensus 299 ~~yneE~~kmQ~~a~~~~~~i~~e~ekl~---~eLe~k~~eL~~r~k~L~~ 346 (630)
+.-|.|+.+|...+...++-+----+||. .++.....+|..+...+.+
T Consensus 59 eERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~ 109 (177)
T PF13870_consen 59 EERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAK 109 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666655555444433333332 2333334444444444444
No 241
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=28.67 E-value=8.3e+02 Score=26.98 Aligned_cols=124 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHh--hhh
Q 038527 299 KSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQK--KAD 376 (630)
Q Consensus 299 ~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~--kad 376 (630)
..|-+.|..|..--...+-.+---..||.+++.--+..+.+|.|-|+- +|+.+-|+ .|.
T Consensus 226 R~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNn-------------------qL~~l~q~fr~a~ 286 (384)
T KOG0972|consen 226 RLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNN-------------------QLASLMQKFRRAT 286 (384)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc-ccccH--HHHHHHHHHHHHHHHH
Q 038527 377 EKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHM-REENV--EVQEKMDAIIKEIKEK 448 (630)
Q Consensus 377 e~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~-~~~d~--~~~~k~~~l~~~l~ek 448 (630)
..+-.+-+.+++-..-+..+--.|-.=++ ||+++|...+---.- .|+-+ .|+..+..|.+++...
T Consensus 287 ~~lse~~e~y~q~~~gv~~rT~~L~eVm~-------e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~m 354 (384)
T KOG0972|consen 287 DTLSELREKYKQASVGVSSRTETLDEVMD-------EIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTM 354 (384)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHH-------HHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhh
No 242
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=28.58 E-value=34 Score=23.38 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=17.6
Q ss_pred eeeccCCCCCCccccchHHHHhhhhc
Q 038527 39 AYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 39 ~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
+|.|++|.. .+.+-..+.+|-.+
T Consensus 1 q~~C~~C~k---~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 1 QFYCDACDK---YFSSENQLKQHMKS 23 (27)
T ss_dssp -CBBTTTTB---BBSSHHHHHCCTTS
T ss_pred CCCcccCCC---CcCCHHHHHHHHcc
Confidence 589999974 47788888998554
No 243
>PLN03188 kinesin-12 family protein; Provisional
Probab=28.54 E-value=1.2e+03 Score=30.52 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 038527 256 STLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNE 303 (630)
Q Consensus 256 ~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yne 303 (630)
..+...|.-.++...+-..+|..-..-.-.--.||+|+--.|.+.|++
T Consensus 1078 r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ 1125 (1320)
T PLN03188 1078 RALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQ 1125 (1320)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444444455666666666666664
No 244
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=28.27 E-value=25 Score=28.27 Aligned_cols=11 Identities=45% Similarity=1.283 Sum_probs=7.6
Q ss_pred eeeccCCCCCCc
Q 038527 39 AYRCPFCRGKKE 50 (630)
Q Consensus 39 ~~~CP~C~~kkK 50 (630)
...|||| |.+.
T Consensus 3 LkPCPFC-G~~~ 13 (61)
T PF14354_consen 3 LKPCPFC-GSAD 13 (61)
T ss_pred CcCCCCC-CCcc
Confidence 3579999 5543
No 245
>PF11214 Med2: Mediator complex subunit 2; InterPro: IPR021017 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family of mediator complex subunit 2 proteins is conserved in fungi. Cyclin-dependent kinase CDK8 or Srb10 interacts with and phosphorylates Med2. Post-translational modifications of Mediator subunits are important for regulation of gene expression [, ].
Probab=27.63 E-value=4.3e+02 Score=24.74 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHH
Q 038527 255 TSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQM 294 (630)
Q Consensus 255 ~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk 294 (630)
.+++...|++.|..-.-=|.+++++++....-+.-|.+-+
T Consensus 43 n~~l~k~L~eki~~Fh~ILDd~~~~l~~sk~~v~~m~e~~ 82 (105)
T PF11214_consen 43 NNQLQKQLSEKIHKFHSILDDTESKLNDSKWYVDTMVELK 82 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888888889999999999888887766543
No 246
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=27.55 E-value=5.2e+02 Score=24.24 Aligned_cols=69 Identities=19% Similarity=0.249 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHH
Q 038527 295 DEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIM 364 (630)
Q Consensus 295 ~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~k 364 (630)
...+..|..||.+ +..+-..+..+-.+...++.++..-..+.+.-...|+..++.-...+..|+.++..
T Consensus 41 ~~Aq~~YE~El~~-Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~ 109 (132)
T PF07926_consen 41 QEAQQKYERELVK-HAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSE 109 (132)
T ss_pred HHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3444555555532 22223344444455555555555555555555556655555555556655544443
No 247
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=27.54 E-value=3.3e+02 Score=27.16 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhHHHH
Q 038527 435 QEKMDAIIKEIKEKEGEMDVVEALNQSLI 463 (630)
Q Consensus 435 ~~k~~~l~~~l~ek~~~l~~~e~~nq~L~ 463 (630)
...+..|+-++.--++.+..++.-|..||
T Consensus 150 ~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 150 QDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444
No 248
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=27.15 E-value=20 Score=28.93 Aligned_cols=15 Identities=27% Similarity=0.718 Sum_probs=10.9
Q ss_pred CeeeccCCCCCCccc
Q 038527 38 TAYRCPFCRGKKETD 52 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~ 52 (630)
..|+||.|...+.+|
T Consensus 33 ~~w~CP~C~a~K~~F 47 (50)
T cd00730 33 DDWVCPVCGAGKDDF 47 (50)
T ss_pred CCCCCCCCCCcHHHc
Confidence 369999997655444
No 249
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=27.10 E-value=39 Score=37.05 Aligned_cols=28 Identities=32% Similarity=0.605 Sum_probs=21.7
Q ss_pred HhHHHHHHhhhhccCCceEEecCCeeeccCCCCC
Q 038527 15 LKDYEYKKYNQLKKGDLKVEVSETAYRCPFCRGK 48 (630)
Q Consensus 15 i~~y~~k~Y~~Lk~g~~kVk~~~~~~~CP~C~~k 48 (630)
|-+..+++|+.-+=| .+..||||.|..+
T Consensus 266 l~eC~~~f~~~e~L~------g~d~W~CpkC~~k 293 (415)
T COG5533 266 LQECIDRFYEEEKLE------GKDAWRCPKCGRK 293 (415)
T ss_pred HHHHHHHhhhHHhhc------CcccccCchhccc
Confidence 557788888876555 6788999999865
No 250
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.07 E-value=5.7e+02 Score=24.52 Aligned_cols=95 Identities=14% Similarity=0.183 Sum_probs=54.9
Q ss_pred ChhhHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 243 TVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLE 322 (630)
Q Consensus 243 Tv~ei~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e 322 (630)
|+||++---.|-...-++.+..+++.-..-|......+...-..|+.-+++...+.+.-.+|+-.++... .++...++.
T Consensus 29 s~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv-~~i~~dv~~ 107 (126)
T PF07889_consen 29 SFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDV-SQIGDDVDS 107 (126)
T ss_pred chhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHH
Confidence 5677776666666667777777776666666655555555666666666666677777777776554332 122222333
Q ss_pred HHHHHHHHHHHHHHHH
Q 038527 323 HEKATSQLEAQKMQLE 338 (630)
Q Consensus 323 ~ekl~~eLe~k~~eL~ 338 (630)
....=..|+.|+.+|+
T Consensus 108 v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 108 VQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333344555554443
No 251
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.02 E-value=8.7e+02 Score=27.26 Aligned_cols=108 Identities=28% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhh
Q 038527 330 LEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQA 409 (630)
Q Consensus 330 Le~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~ 409 (630)
|+.|.++|-..-.-|.+ +-.-+++|+.|.+.+.-.-.+|-.||-.-+.
T Consensus 73 lq~kirk~~e~~eglr~--------------------------------i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~ 120 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRK--------------------------------IRESVEERQQESEQLQSQNQKLKNQLFHVRE 120 (401)
T ss_pred HHHHHHHHHhccHHHHH--------------------------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q ss_pred hHHhHHHhhhhhHHHhhc----ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHH---HHHHhhccHHHHH
Q 038527 410 LELEIEQKRGTIQVMKHM----REENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSL---IVRERKSNDELQE 475 (630)
Q Consensus 410 LELEi~qlkg~L~vmKh~----~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L---~~ker~sndElq~ 475 (630)
=+-+.+|..+=|.-+ .++..-..=.++++..+-.||+++- ..||+.| +.--..-|||.|.
T Consensus 121 ---vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeees---q~LnrELaE~layqq~L~~eyQa 187 (401)
T PF06785_consen 121 ---VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEES---QTLNRELAEALAYQQELNDEYQA 187 (401)
T ss_pred ---HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHH---HHHHHHHHHHHHHHHHHHHHhhc
No 252
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=26.77 E-value=1e+02 Score=32.50 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=36.6
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC-C-CceeEEEEeCCC
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR-G-HSGFAVVEFYKD 181 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~-G-h~g~aVV~F~~d 181 (630)
.+.|-|+|.. .+..+|++.|+. |.|+ .|+++..+. | +.||+.|.|...
T Consensus 5 ~l~V~nLp~~---------~~e~~l~~~F~~--~G~i~~v~i~~d~~~g~s~g~afV~f~~~ 55 (352)
T TIGR01661 5 NLIVNYLPQT---------MTQEEIRSLFTS--IGEIESCKLVRDKVTGQSLGYGFVNYVRP 55 (352)
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHc--cCCEEEEEEEEcCCCCccceEEEEEECcH
Confidence 3667888765 367899999999 8885 677776543 3 779999999764
No 253
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=26.72 E-value=8.8e+02 Score=29.84 Aligned_cols=131 Identities=18% Similarity=0.279 Sum_probs=76.2
Q ss_pred HHHHHhchhHHhhhHHhHHH----hhhhhHHHhhc-ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccH
Q 038527 397 IIELQKGLDAKQALELEIEQ----KRGTIQVMKHM-REENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSND 471 (630)
Q Consensus 397 il~LEkqLd~kQ~LELEi~q----lkg~L~vmKh~-~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~snd 471 (630)
++++|+....+=+=.+|-+| |+.||.+++.- |+++.+ ..-++++.+.++. ..|
T Consensus 207 ~~~~ek~I~~kVk~~meK~QREyyL~EQlKaIqkELG~~~d~-~~e~~~~~~kie~--~~~------------------- 264 (782)
T COG0466 207 LLQLEKRIRKKVKEQMEKSQREYYLREQLKAIQKELGEDDDD-KDEVEELREKIEK--LKL------------------- 264 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-hhHHHHHHHHHhh--cCC-------------------
Confidence 67788888777777777777 78888888876 554311 2445555544431 111
Q ss_pred HHHHHHHHHHHhhhccCCccccceeecCCCCChHHHHHHHhcCCCchhhHHHHHHHHHHHHhhcCCCCcceeEE-ecCCC
Q 038527 472 ELQEARKELINSLKEGRTRATIGVKRMGEIDNRPFLAAAKAKFPAEEADEKGLELCSLWEEYLRDPNWHPFKIL-VDKEG 550 (630)
Q Consensus 472 Elq~ark~li~~l~~~~~~~~IgiKrmGeld~~~f~~ac~~k~~~~~~~~~a~~l~s~Wq~~l~dp~W~PFk~v-~~~~g 550 (630)
=.+|++..-+.|..+ ++.++.-| -+.+|..|=+-|-+--|+-.... .|= .
T Consensus 265 -p~evk~k~~~El~kL------------------------~~m~~~Sa---E~~ViRnYlDwll~lPW~~~sk~~~Dl-~ 315 (782)
T COG0466 265 -PKEAKEKAEKELKKL------------------------ETMSPMSA---EATVIRNYLDWLLDLPWGKRSKDKLDL-K 315 (782)
T ss_pred -CHHHHHHHHHHHHHH------------------------hcCCCCCc---hHHHHHHHHHHHHhCCCccccchhhhH-H
Confidence 134555554444432 01111111 24567888888999999988777 552 2
Q ss_pred CcccccccCcHHHHHHHHHhhHHHHHHHHH
Q 038527 551 NCKEIIDVEDQKLKSLKNEYGEQVHNAVAL 580 (630)
Q Consensus 551 ~~keii~edD~kL~~Lk~e~Geev~~aV~~ 580 (630)
+.++|+|.|-==|.+.|+--=| |=||-.
T Consensus 316 ~a~~iLd~dHYGLekVKeRIlE--yLAV~~ 343 (782)
T COG0466 316 KAEKILDKDHYGLEKVKERILE--YLAVQK 343 (782)
T ss_pred HHHHHhcccccCchhHHHHHHH--HHHHHH
Confidence 4578999887666655543222 445543
No 254
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=26.24 E-value=7.6e+02 Score=25.72 Aligned_cols=37 Identities=11% Similarity=0.264 Sum_probs=18.2
Q ss_pred HHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 038527 267 EVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNE 303 (630)
Q Consensus 267 ~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yne 303 (630)
...++++.+++.-+.+....+-.+|.....++..|++
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~ 63 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEE 63 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555554444444443
No 255
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=25.97 E-value=2.6e+02 Score=25.10 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 038527 257 TLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIR 306 (630)
Q Consensus 257 ~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~ 306 (630)
+-.+.+-.++..-|-.|..||.+..-....|+.+++.+.+.+..+.++..
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34677788888889999999999999999999999888888877766543
No 256
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.83 E-value=57 Score=22.69 Aligned_cols=18 Identities=33% Similarity=0.636 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhchhH
Q 038527 389 EKEKLRRKIIELQKGLDA 406 (630)
Q Consensus 389 EKe~~~~kil~LEkqLd~ 406 (630)
|...+.++|-.||+||..
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 566788999999999974
No 257
>smart00355 ZnF_C2H2 zinc finger.
Probab=25.83 E-value=44 Score=21.05 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=14.7
Q ss_pred eeccCCCCCCccccchHHHHhhhh
Q 038527 40 YRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 40 ~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
|.|+.|+.. +..-..|..|-.
T Consensus 1 ~~C~~C~~~---f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECGKV---FKSKSALKEHMR 21 (26)
T ss_pred CCCCCCcch---hCCHHHHHHHHH
Confidence 579999843 666777777743
No 258
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=25.77 E-value=4.8e+02 Score=27.34 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=44.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 038527 279 KYLETSTYLDLTMEQMDEMNKSRN-----EE--IRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKN 351 (630)
Q Consensus 279 k~~e~~~sL~r~meEk~~l~~~yn-----eE--~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~ 351 (630)
-|-+.-..|.+||.|+.+.+..-- +| =...-+...-..-+||.+.++-|.+|+++-.+-..|++|-+- .
T Consensus 119 ~y~~ak~~~~~~~~ekkkklkKegkpt~ieedDp~lfk~av~~~~mklfae~erkRk~~e~r~~~eRkr~re~eI----e 194 (250)
T KOG1150|consen 119 VYTAAKNRLEKVMSEKKKKLKKEGKPTIIEEDDPELFKQAVYKQVMKLFAELERKRKELEARANEERKRQREEEI----E 194 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----H
Confidence 345555678888888754432100 00 001112223335567777777777766665555444444321 1
Q ss_pred HHHHHhhHHHHHHh
Q 038527 352 ETERKKLHSEKIMN 365 (630)
Q Consensus 352 ~~er~kl~~E~~kn 365 (630)
..+++|++.|-++|
T Consensus 195 aeek~Kr~~E~qKn 208 (250)
T KOG1150|consen 195 AEEKRKREREWQKN 208 (250)
T ss_pred HHHHHHHHHHHHHH
Confidence 25778888888887
No 259
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.76 E-value=1.3e+03 Score=28.38 Aligned_cols=19 Identities=11% Similarity=0.384 Sum_probs=9.8
Q ss_pred CCCcccccChhhHHHHHHh
Q 038527 135 EDGRYVGESGSKLRDEFRS 153 (630)
Q Consensus 135 ~dg~~~G~s~~~L~~~~~~ 153 (630)
.+|.+++.+.....+++..
T Consensus 107 ~~g~~~~~~~~~v~~~i~~ 125 (908)
T COG0419 107 VDGERIADGKKDVNEKIEE 125 (908)
T ss_pred cCcchhhhhhhhHHHHHHH
Confidence 3566665555544444433
No 260
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=25.67 E-value=82 Score=36.91 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=41.4
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCC
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYK 180 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~ 180 (630)
-|-.||-|.|-. . ....|+-.|+..||...-+.|--...+-+||+.|.|-.
T Consensus 117 k~rLIIRNLPf~-~--------k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~ 167 (678)
T KOG0127|consen 117 KWRLIIRNLPFK-C--------KKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKE 167 (678)
T ss_pred cceEEeecCCcc-c--------CcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEee
Confidence 799999999875 2 22378999999888777888866667788999999965
No 261
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=25.64 E-value=5e+02 Score=29.24 Aligned_cols=52 Identities=27% Similarity=0.399 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhcc-CCcc--------ccceeecCCC
Q 038527 432 VEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEG-RTRA--------TIGVKRMGEI 501 (630)
Q Consensus 432 ~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~~l~~~-~~~~--------~IgiKrmGel 501 (630)
.+++.++.+|.++|.+.+.++ .++++.+.+++..+..+ .... ++=||+.|+-
T Consensus 69 ~~l~~~~~~l~~~~~~~~~~~------------------~~~~~~~~~~~~~iPN~~~~~vP~g~~~~~n~~i~~~g~~ 129 (425)
T PRK05431 69 EALIAEVKELKEEIKALEAEL------------------DELEAELEELLLRIPNLPHDSVPVGKDEDDNVEVRRWGEP 129 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhCCCCCCccCCCCCCCCCceEEEEeCCC
Confidence 346667777777776666665 35666666777777766 3323 3447888863
No 262
>smart00360 RRM RNA recognition motif.
Probab=25.50 E-value=97 Score=23.12 Aligned_cols=45 Identities=27% Similarity=0.420 Sum_probs=30.3
Q ss_pred cChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHH
Q 038527 142 ESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 142 ~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
.+...|++.|+. |.++ .+.+...+ ..++|++.|.|.. -..-..|+
T Consensus 8 ~~~~~l~~~f~~--~g~v~~~~i~~~~~~~~~~~~a~v~f~~-~~~a~~a~ 55 (71)
T smart00360 8 VTEEELRELFSK--FGKIESVRLVRDKDTGKSKGFAFVEFES-EEDAEKAL 55 (71)
T ss_pred cCHHHHHHHHHh--hCCEeEEEEEeCCCCCCCCceEEEEeCC-HHHHHHHH
Confidence 467889999998 7764 55555443 3578999999965 34444444
No 263
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=25.26 E-value=36 Score=22.45 Aligned_cols=19 Identities=32% Similarity=0.737 Sum_probs=10.4
Q ss_pred eeccCCCCCCccccchHHHHhhh
Q 038527 40 YRCPFCRGKKETDYLYKELLQHA 62 (630)
Q Consensus 40 ~~CP~C~~kkK~~y~~~~LLqHA 62 (630)
|+||+|+=.. ....|..|-
T Consensus 1 y~C~~C~y~t----~~~~l~~H~ 19 (24)
T PF13909_consen 1 YKCPHCSYST----SKSNLKRHL 19 (24)
T ss_dssp EE-SSSS-EE----SHHHHHHHH
T ss_pred CCCCCCCCcC----CHHHHHHHH
Confidence 7899997332 144566663
No 264
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=25.21 E-value=4.2e+02 Score=27.69 Aligned_cols=47 Identities=17% Similarity=0.317 Sum_probs=34.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHH
Q 038527 429 EENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQE 475 (630)
Q Consensus 429 ~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ 475 (630)
.+....+...+.|+++|+.+..+|+..+.-+-+|...--.-++|.-.
T Consensus 151 ~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eydr 197 (216)
T KOG1962|consen 151 EENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDR 197 (216)
T ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 33445667788888999999999988888888887665555555443
No 265
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.13 E-value=1.4e+03 Score=28.53 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHH
Q 038527 433 EVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEA 476 (630)
Q Consensus 433 ~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~a 476 (630)
+.++++.+....|.+...++..++.--|||+.+--..++.+..+
T Consensus 796 El~~~l~e~~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m 839 (970)
T KOG0946|consen 796 ELLKNLSEESTRLQELQSELTQLKEQIQTLLERTSAAADSLESM 839 (970)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHh
Confidence 34455667777777777777777777788876666666655543
No 266
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.09 E-value=9.8e+02 Score=26.63 Aligned_cols=41 Identities=15% Similarity=0.145 Sum_probs=25.8
Q ss_pred cCCCCCCccccchHHHHhhhhc-cCCCCCcChHHHHhhHHHHHHHHhhcc
Q 038527 43 PFCRGKKETDYLYKELLQHASD-VGRSRSRGAREKAQHLALEKYVSKYLV 91 (630)
Q Consensus 43 P~C~~kkK~~y~~~~LLqHA~g-vg~s~~r~ak~ka~HlaLak~L~~dl~ 91 (630)
-||+.. ++++|-.|-+. .+.+ ...+.---..|+-.|....|
T Consensus 16 ~f~~~~-----~~kpl~r~yFa~~~~N---p~eQF~~F~~L~~WL~~~~g 57 (359)
T PF10498_consen 16 DFCKKR-----KMKPLSRHYFAVPSTN---PGEQFYYFTSLCAWLISKAG 57 (359)
T ss_pred HHhhhc-----CCCCCCHHHhcCCCCC---chHHHHHHHHHHHHHHHhcC
Confidence 377633 26777778666 3212 34555666678888888776
No 267
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=25.01 E-value=6e+02 Score=24.08 Aligned_cols=11 Identities=9% Similarity=0.199 Sum_probs=5.2
Q ss_pred eeeeeecCCCC
Q 038527 216 YGWIARDDDYN 226 (630)
Q Consensus 216 YGWvAradDy~ 226 (630)
+||+.....++
T Consensus 14 ~G~~~~~~~~~ 24 (151)
T PF11559_consen 14 RGYPSDGLLFD 24 (151)
T ss_pred CCCCCCCccCc
Confidence 45554444444
No 268
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=24.82 E-value=40 Score=38.60 Aligned_cols=49 Identities=24% Similarity=0.302 Sum_probs=28.3
Q ss_pred hhHhHHHHHHhhhhccCCc-----eEE--ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 13 SELKDYEYKKYNQLKKGDL-----KVE--VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 13 sei~~y~~k~Y~~Lk~g~~-----kVk--~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
+++-.|....|...-+..+ =|+ .+=+-|-||+|. +.|++..++++|--.
T Consensus 24 ~eL~sy~~~~~~~~a~~~Lseal~fak~n~sWrFWiCp~Cs---kkF~d~~~~~~H~~~ 79 (466)
T PF04780_consen 24 DELKSYYESVYDREAADALSEALSFAKENKSWRFWICPRCS---KKFSDAESCLSHMEQ 79 (466)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcCceeEeeCCccc---ceeCCHHHHHHHHHH
Confidence 4555566655543322222 121 122356677776 449999999999654
No 269
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.80 E-value=35 Score=36.58 Aligned_cols=23 Identities=35% Similarity=0.703 Sum_probs=17.2
Q ss_pred HHHhhhhCCCCCccccccccccc
Q 038527 582 QSEMNQYNPSGRYTIPELWNFKE 604 (630)
Q Consensus 582 l~E~neyN~sgry~v~elWN~ke 604 (630)
|-+++.=|=+|||+||.||+.|-
T Consensus 110 lY~~~~p~Y~grfTVPVLWD~k~ 132 (319)
T KOG2903|consen 110 LYYIASPNYTGRFTVPVLWDLKT 132 (319)
T ss_pred HHhhcCCCCCceEEEEEEEcccc
Confidence 33455556779999999999763
No 270
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=24.51 E-value=5.6e+02 Score=29.37 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhcc-CC--------ccccceeecCCCC
Q 038527 432 VEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEG-RT--------RATIGVKRMGEID 502 (630)
Q Consensus 432 ~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~~l~~~-~~--------~~~IgiKrmGeld 502 (630)
+.++..+..|.++|++.+..+ ++++.....++..|..+ .. ..|+=|++-|+..
T Consensus 71 ~~l~~e~~~l~~~l~~~e~~~------------------~~~~~~l~~~ll~ipNi~~~~VPvg~de~~n~~vr~~g~~~ 132 (429)
T COG0172 71 EELIAEVKELKEKLKELEAAL------------------DELEAELDTLLLTIPNIPHESVPVGKDEDDNVEVRRWGEPP 132 (429)
T ss_pred HHHHHHHHHHHHHHHhccHHH------------------HHHHHHHHHHHHhCCCCCccccCcCCCcccceEEEEEecCc
Confidence 556777777777776666665 35555555666677765 32 3445588988873
No 271
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=24.42 E-value=1.5e+03 Score=28.52 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=19.0
Q ss_pred HHHhchhHHhhhHHhHHHhh-hhhHHHhhc
Q 038527 399 ELQKGLDAKQALELEIEQKR-GTIQVMKHM 427 (630)
Q Consensus 399 ~LEkqLd~kQ~LELEi~qlk-g~L~vmKh~ 427 (630)
+||.-..++|.|+.+|-|.+ |.|+..+--
T Consensus 1017 e~eaiineiee~eaeIiQekE~el~e~efk 1046 (1424)
T KOG4572|consen 1017 ELEAIINEIEELEAEIIQEKEGELIEDEFK 1046 (1424)
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHhh
Confidence 44555567888888888776 556555443
No 272
>TIGR00165 S18 ribosomal protein S18. This ribosomal small subunit protein is found in all eubacteria so far, as well as in chloroplasts. YER050C from Saccharomyces cerevisiae and a related protein from Caenorhabditis elegans appear to be homologous and may represent mitochondrial forms. The trusted cutoff is set high enough that these two candidate S18 proteins are not categorized automatically.
Probab=24.37 E-value=1.3e+02 Score=26.08 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=27.7
Q ss_pred eeccCCCCCCc-cccchHHHHhhhhcc-CC--CCCcChHHHHhhHHHHHHHHh
Q 038527 40 YRCPFCRGKKE-TDYLYKELLQHASDV-GR--SRSRGAREKAQHLALEKYVSK 88 (630)
Q Consensus 40 ~~CP~C~~kkK-~~y~~~~LLqHA~gv-g~--s~~r~ak~ka~HlaLak~L~~ 88 (630)
=.||||..+.. =||.=-+||.+=.+. |. ++.-+.--...|+.|+++++.
T Consensus 6 k~c~~~~~~~~~iDYKnv~lL~~Fis~~GkIlpRriTgl~~k~Qr~l~~aIKr 58 (70)
T TIGR00165 6 KYCRFTAEGIQFIDYKDLDLLKKFISERGKILPRRITGTSAKYQRRLARAIKR 58 (70)
T ss_pred CCCCccCCCCCcCCccCHHHHHHhcCCCCeEcCCccCCcCHHHHHHHHHHHHH
Confidence 35999975432 244434455553332 21 223334556778889888876
No 273
>KOG1994 consensus Predicted RNA binding protein, contains G-patch and Zn-finger domains [RNA processing and modification]
Probab=24.26 E-value=39 Score=35.40 Aligned_cols=30 Identities=27% Similarity=0.428 Sum_probs=24.5
Q ss_pred EEecCCeeeccCCCCCCccccchHHHHhhhhcc
Q 038527 33 VEVSETAYRCPFCRGKKETDYLYKELLQHASDV 65 (630)
Q Consensus 33 Vk~~~~~~~CP~C~~kkK~~y~~~~LLqHA~gv 65 (630)
+..-++-|.|.||+-+ |-+--+|+.|--||
T Consensus 233 ~~LR~eh~YC~fCG~~---y~~~edl~ehCPGv 262 (268)
T KOG1994|consen 233 IFLRSEHYYCFFCGIK---YKDEEDLYEHCPGV 262 (268)
T ss_pred HHHhccceEEEEeccc---cCCHHHHHHhCCCC
Confidence 3346889999999866 66789999998776
No 274
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=24.11 E-value=1.4e+02 Score=28.44 Aligned_cols=61 Identities=26% Similarity=0.367 Sum_probs=46.0
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIMFE 192 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~le 192 (630)
+.++.|-|++.. .+..+|.+.|.. |.+. .++..+.. .-.+|++.|.|...-....-...+.
T Consensus 115 ~~~l~v~nL~~~---------~~~~~l~~~F~~--~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~ 178 (306)
T COG0724 115 NNTLFVGNLPYD---------VTEEDLRELFKK--FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELN 178 (306)
T ss_pred CceEEEeCCCCC---------CCHHHHHHHHHh--cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcC
Confidence 788889999865 367899999999 8886 66666654 5688999999998766554444444
No 275
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.56 E-value=1e+03 Score=26.22 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=23.5
Q ss_pred eecCCCCCCChhhhhhhhCCCCcChhhHHHhhhhhhhhHHHHHHHHHHH
Q 038527 220 ARDDDYNSKSLIGDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEV 268 (630)
Q Consensus 220 AradDy~s~g~ig~~Lrk~gdLKTv~ei~~E~~rk~~~lv~~L~n~I~~ 268 (630)
-+.+|+++.-..++||-. -..+|-+|.|-|.+
T Consensus 84 k~e~dF~~l~~yNdYLE~-----------------vEdii~nL~~~~d~ 115 (309)
T TIGR00570 84 KREEDFPSLREYNDYLEE-----------------VEDIVYNLTNNIDL 115 (309)
T ss_pred cchhccCCHHHHHHHHHH-----------------HHHHHHHhhcCCcH
Confidence 378899988888888863 33477788877765
No 276
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=23.54 E-value=1.1e+02 Score=30.41 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=36.6
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFE 192 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~le 192 (630)
|||+-|+=.-+. ++=+ --..-..+-..|+. |.|.....+.|++ .|||-|...-+.-+-..+|+
T Consensus 84 pPMsTIVVRWlk--knm~-~~edl~sV~~~Ls~--fGpI~SVT~cGrq----savVvF~d~~SAC~Av~Af~ 146 (166)
T PF15023_consen 84 PPMSTIVVRWLK--KNMQ-PTEDLKSVIQRLSV--FGPIQSVTLCGRQ----SAVVVFKDITSACKAVSAFQ 146 (166)
T ss_pred CCceeEEeehhh--hcCC-hHHHHHHHHHHHHh--cCCcceeeecCCc----eEEEEehhhHHHHHHHHhhc
Confidence 999877632221 0100 00011333455899 9998777776654 38999988777655544443
No 277
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=23.23 E-value=2.6e+02 Score=25.48 Aligned_cols=59 Identities=22% Similarity=0.265 Sum_probs=44.4
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCC-----CCCceeEEEEeCCChhhhHHHHHHHhhhh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSR-----RGHSGFAVVEFYKDWAGFKNAIMFEKSFE 196 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~-----~Gh~g~aVV~F~~dw~Gf~nA~~lek~Fe 196 (630)
++.|-|||.. . +-..|.+.+.. ..++..--+|-| ..+.|||.|-|.+. ..|.+|.+.|.
T Consensus 3 TvMirNIPn~-~--------t~~~L~~~l~~--~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~----~~~~~F~~~f~ 66 (97)
T PF04059_consen 3 TVMIRNIPNK-Y--------TQEMLIQILDE--HFKGKYDFFYLPIDFKNKCNLGYAFVNFTSP----QAAIRFYKAFN 66 (97)
T ss_pred eEEEecCCCC-C--------CHHHHHHHHHH--hccCcceEEEeeeeccCCCceEEEEEEcCCH----HHHHHHHHHHc
Confidence 6789999986 2 55677787776 556677777743 45789999999764 56888888888
No 278
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=22.93 E-value=1.1e+03 Score=26.62 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhchhHHhhhHHh
Q 038527 391 EKLRRKIIELQKGLDAKQALELE 413 (630)
Q Consensus 391 e~~~~kil~LEkqLd~kQ~LELE 413 (630)
|-..++|-+|| +....|...+|
T Consensus 308 Es~qtRisklE-~~~~Qq~~q~e 329 (395)
T PF10267_consen 308 ESCQTRISKLE-QQQQQQVVQLE 329 (395)
T ss_pred HHHHHHHHHHH-HHHhhhhhhhc
Confidence 34568888988 44444444433
No 279
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=22.90 E-value=1.1e+02 Score=24.47 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=18.5
Q ss_pred hhhhHHHHHHHHH---HHHHHHHHHHH
Q 038527 281 LETSTYLDLTMEQ---MDEMNKSRNEE 304 (630)
Q Consensus 281 ~e~~~sL~r~meE---k~~l~~~yneE 304 (630)
..+|.|++++|+| +..+..+||++
T Consensus 4 D~iT~SM~~ai~eT~rRR~~Q~~yN~~ 30 (44)
T PF12344_consen 4 DKITDSMQKAIDETNRRREIQIAYNKE 30 (44)
T ss_dssp SS--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999987 68899999987
No 280
>PRK13401 30S ribosomal protein S18; Provisional
Probab=22.85 E-value=1.3e+02 Score=26.90 Aligned_cols=50 Identities=20% Similarity=0.127 Sum_probs=29.5
Q ss_pred eeccCCCCCCc-cccchHHHHhhhh-ccCC--CCCcChHHHHhhHHHHHHHHhh
Q 038527 40 YRCPFCRGKKE-TDYLYKELLQHAS-DVGR--SRSRGAREKAQHLALEKYVSKY 89 (630)
Q Consensus 40 ~~CP~C~~kkK-~~y~~~~LLqHA~-gvg~--s~~r~ak~ka~HlaLak~L~~d 89 (630)
=.||||..+-. =||.=-+||.+=. ..|. ++.-+.--...|+.|+++++.-
T Consensus 14 k~c~~~~~~~~~iDYKnv~lL~~Fis~~GkIlpRR~TGl~~k~QR~l~~AIKrA 67 (82)
T PRK13401 14 KKNLLDSLGIESVDYKDTALLRTFISDRGKIRSRRVTGLTVQQQRQVATAIKNA 67 (82)
T ss_pred CCCCcccCCCCcCCccCHHHHHHhcCCCccCcCcccCCcCHHHHHHHHHHHHHH
Confidence 46999986643 2555445555433 3331 2233345567889999998863
No 281
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.85 E-value=6.6e+02 Score=26.73 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc-ccccHHHHHHHHHHHHHH
Q 038527 383 AQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHM-REENVEVQEKMDAIIKEI 445 (630)
Q Consensus 383 ~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~-~~~d~~~~~k~~~l~~~l 445 (630)
.++-..||+++++.+-+||-++.+=|.-=-.++-=+.+|+-|-.. .++-++++++.++|...+
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 344556899999999999888887664222222222333333222 444556677777666544
No 282
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=22.75 E-value=8.8e+02 Score=25.25 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 291 MEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEH 340 (630)
Q Consensus 291 meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r 340 (630)
+++-.+|++.|-++|..-...++..+-.++-.+..+..+++......+.|
T Consensus 22 ~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~ 71 (225)
T COG1842 22 AEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKL 71 (225)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567889999999999999999999999998877666666544443333
No 283
>PRK04863 mukB cell division protein MukB; Provisional
Probab=22.69 E-value=1.9e+03 Score=29.16 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhchhHHhhhHHhHHHhhh
Q 038527 392 KLRRKIIELQKGLDAKQALELEIEQKRG 419 (630)
Q Consensus 392 ~~~~kil~LEkqLd~kQ~LELEi~qlkg 419 (630)
.+..++-.||+.|...|..+-=..+..+
T Consensus 517 ~~~~~~~~l~~~~~~q~~~~~~~~~~~~ 544 (1486)
T PRK04863 517 QLRMRLSELEQRLRQQQRAERLLAEFCK 544 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666555555554
No 284
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=22.67 E-value=1.4e+02 Score=31.54 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=52.0
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCC-CCcccccccCCCC-CceeEEEEeCCChhhhHHHHHHHhhhhhcCC
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGF-NPLKVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIMFEKSFEVDHH 200 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF-~p~kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~lek~Fe~~~~ 200 (630)
.++|-|.++ |.....|++-|+. | .+.+|-.-|++.| ..|++-|.|...-.++.--..|+. |..+|.
T Consensus 85 ~v~v~NL~~---------~V~~~Dl~eLF~~--~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g-v~ldG~ 152 (243)
T KOG0533|consen 85 KVNVSNLPY---------GVIDADLKELFAE--FGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG-VALDGR 152 (243)
T ss_pred eeeeecCCc---------CcchHHHHHHHHH--hccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC-cccCCc
Confidence 356777665 4567888999999 7 7888888888887 559999999999888888888887 665543
No 285
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=22.53 E-value=1.6e+03 Score=28.26 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhh
Q 038527 436 EKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLK 485 (630)
Q Consensus 436 ~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~~l~ 485 (630)
.....|...|.+|..++ ..++.++ +|.+++|.++-..+.
T Consensus 526 ~~~~~l~~~l~~KD~~~-------~~~~~~~----~e~~~~~~e~e~si~ 564 (980)
T KOG0980|consen 526 NQLAQLEDLLKQKDRLA-------AELVARE----EEREALRLEAERSIN 564 (980)
T ss_pred HHHHHHHHHHHhhHHHH-------HHHHHHH----HHHHHHHHHHHhhHH
Confidence 34455555555555444 3444444 677778887766644
No 286
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=22.42 E-value=5.5e+02 Score=27.69 Aligned_cols=14 Identities=21% Similarity=0.593 Sum_probs=7.6
Q ss_pred hhhhhhhhCCCCcC
Q 038527 230 LIGDHLRKNGDLKT 243 (630)
Q Consensus 230 ~ig~~Lrk~gdLKT 243 (630)
++-..+-|+||+-+
T Consensus 101 ilq~If~KHGDIAs 114 (269)
T PF05278_consen 101 ILQKIFEKHGDIAS 114 (269)
T ss_pred HHHHHHHhCccHhh
Confidence 45555556665543
No 287
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=22.41 E-value=8.5e+02 Score=26.08 Aligned_cols=115 Identities=21% Similarity=0.285 Sum_probs=55.4
Q ss_pred CCCceeeccceEEEeccccccCCC-CcccccC---hhhHHHHHHhCCCCCcccc-----cccCCCCCceeEEEEeCCChh
Q 038527 113 QPDQLLVYPWVGIVANIKTQRGED-GRYVGES---GSKLRDEFRSKGFNPLKVH-----PLWSRRGHSGFAVVEFYKDWA 183 (630)
Q Consensus 113 ~~dd~iVWPwmgII~Ni~~e~~~d-g~~~G~s---~~~L~~~~~~~GF~p~kv~-----~l~g~~Gh~g~aVV~F~~dw~ 183 (630)
-+.=.+.||=-||=.-++.. ... ...+|.= .+--+.+|+.+|...-... -+--+-|++-. +++|++
T Consensus 42 ~rGl~yFWPapv~q~~~~~p-gegaktvvGe~y~~esvPr~~L~~agmplPe~~~~~~TRlliK~gNRel----yGsDF~ 116 (289)
T COG4985 42 WRGLTYFWPAPVLQWQTPDP-GEGAKTVVGELYARESVPRSHLKEAGMPLPEKVQAAATRLLIKVGNREL----YGSDFI 116 (289)
T ss_pred hcccccccCchheeeeccCC-CccchhhHHHHHHhhcccHHHHHHcCCCCCCchHHHHHHHHHHhcchhh----ccchHH
Confidence 34556788888877766542 111 1222221 0122445666666432211 11122233321 345544
Q ss_pred hhHHHHHHHhhhhhcCCChhhhhhhcCCCccceeeeeecCCCCC---CChhhhhhhh
Q 038527 184 GFKNAIMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNS---KSLIGDHLRK 237 (630)
Q Consensus 184 Gf~nA~~lek~Fe~~~~GKkdW~~~~~~~~~LYGWvAradDy~s---~g~ig~~Lrk 237 (630)
-+ +.|+-.|..--.|-..-. ++.++.+||++++-+|-.. .++.-.+|+|
T Consensus 117 ~l---le~~~q~~~~P~gl~vle--R~~~G~~yG~ll~~~~ngq~l~Gd~l~~eLqk 168 (289)
T COG4985 117 AL---LEFETQFKGAPQGLAVLE--RSRGGQLYGKLLRFDSNGQELDGDPLERELQK 168 (289)
T ss_pred HH---HHHHHHhhcCcchheeee--eccCcchhhheeeeccCCCcccCcHHHHHHHH
Confidence 43 345555554444433333 3446799999999887542 2344444444
No 288
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=22.36 E-value=5.5e+02 Score=22.68 Aligned_cols=30 Identities=30% Similarity=0.605 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Q 038527 378 KVWRLAQVHKEEKEKLRRKIIELQKGLDAK 407 (630)
Q Consensus 378 ~vlkL~e~hkrEKe~~~~kil~LEkqLd~k 407 (630)
.|..|-..|.+=|+..-..|..|-.+|+++
T Consensus 47 ~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 47 KVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355566666666666666666666666654
No 289
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=21.92 E-value=5.2e+02 Score=23.75 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhh
Q 038527 382 LAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKH 426 (630)
Q Consensus 382 L~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh 426 (630)
.|..-+++...+..+..+|+++|..+.. .|.-|+.+|..+|.
T Consensus 38 MVa~ar~e~~~~e~k~~~le~~l~e~~~---~l~~lq~qL~~LK~ 79 (100)
T PF06428_consen 38 MVADARRERAALEEKNEQLEKQLKEKEA---LLESLQAQLKELKT 79 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTHHCH---CCCHCTSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4566678888899999999999998763 23334444444444
No 290
>PRK10698 phage shock protein PspA; Provisional
Probab=21.91 E-value=8.8e+02 Score=24.95 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 038527 256 STLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSR 301 (630)
Q Consensus 256 ~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~y 301 (630)
+.+++...+=+...+..+.+|+.-+.+.-..+.++|-....+...|
T Consensus 16 n~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~ 61 (222)
T PRK10698 16 NALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRI 61 (222)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556667777777777777777777776655554433
No 291
>PRK00846 hypothetical protein; Provisional
Probab=21.77 E-value=3.2e+02 Score=24.09 Aligned_cols=53 Identities=13% Similarity=0.220 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhcc
Q 038527 431 NVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEG 487 (630)
Q Consensus 431 d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~~l~~~ 487 (630)
|.++-.+|++|+..|.-.++-+ +.||++++. -+..-|.|+..=+.|..-|.++
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tI---e~LN~~v~~-qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQAL---TELSEALAD-ARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445578888888887766655 688888865 6667789999888899888877
No 292
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=21.74 E-value=1.9e+02 Score=25.54 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHH
Q 038527 434 VQEKMDAIIKEIKEKEGEMDVVEALNQSLIVR 465 (630)
Q Consensus 434 ~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~k 465 (630)
+.+.-.+|..+|.+|.+|++.+..+..+|--|
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~K 34 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGK 34 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455788999999999999999999888543
No 293
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=21.72 E-value=1.9e+03 Score=28.78 Aligned_cols=38 Identities=11% Similarity=0.088 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 038527 291 MEQMDEMNKSRNEEIRK---MQQSAHDHFQKIYLEHEKATS 328 (630)
Q Consensus 291 meEk~~l~~~yneE~~k---mQ~~a~~~~~~i~~e~ekl~~ 328 (630)
-.+.++..++|.+++.+ -+..|.+....|..-+..++.
T Consensus 912 ~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~ 952 (1294)
T KOG0962|consen 912 KVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQ 952 (1294)
T ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457778888888877 577777777777666655543
No 294
>PRK00391 rpsR 30S ribosomal protein S18; Reviewed
Probab=21.70 E-value=1.5e+02 Score=26.25 Aligned_cols=51 Identities=24% Similarity=0.316 Sum_probs=30.8
Q ss_pred CeeeccCCCCCCc-cccchHHHHhhhhccCC---CCCcChHHHHhhHHHHHHHHh
Q 038527 38 TAYRCPFCRGKKE-TDYLYKELLQHASDVGR---SRSRGAREKAQHLALEKYVSK 88 (630)
Q Consensus 38 ~~~~CP~C~~kkK-~~y~~~~LLqHA~gvg~---s~~r~ak~ka~HlaLak~L~~ 88 (630)
+.-.||||..+-. =||.=-+||++=.+..| ++.-+.--...|+.|+++++.
T Consensus 13 r~k~c~~c~~~~~~iDYKnv~lL~~Fis~~GkIlprriTG~~~k~Qr~l~~aIkr 67 (79)
T PRK00391 13 RKKVCRFCAEKIEYIDYKDVELLKKFISERGKILPRRITGTSAKHQRQLATAIKR 67 (79)
T ss_pred CCCCCcccCCCCCcCCccCHHHHHHhcCCCceEcCcccCCcCHHHHHHHHHHHHH
Confidence 3456999987642 35555566666433221 223344556788888888876
No 295
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=21.65 E-value=1e+03 Score=25.72 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhH
Q 038527 294 MDEMNKSRNEEIRKMQQSAHDHF---QKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATL 370 (630)
Q Consensus 294 k~~l~~~yneE~~kmQ~~a~~~~---~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~ 370 (630)
+..+...|..-+..+|....+|. .+...+|..|+..|.+-....+.|...++++--.-+-+- +++..
T Consensus 105 R~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~----------Ql~~A 174 (309)
T PF09728_consen 105 RKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEV----------QLAEA 174 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH----------HHHHH
Confidence 45566666666666666554443 446677777777777777777777766665433222222 23333
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 371 EQKKADEKVWRLAQVHKEEKEKLRRKIIE 399 (630)
Q Consensus 371 EQ~kade~vlkL~e~hkrEKe~~~~kil~ 399 (630)
.=+.+...+-...+.++++++.++....+
T Consensus 175 Kl~q~~~~~~~e~~k~~~~~~~~l~~~~~ 203 (309)
T PF09728_consen 175 KLEQQQEEAEQEKEKAKQEKEILLEEAAQ 203 (309)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333344444556667777777776663
No 296
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=21.55 E-value=3e+02 Score=26.43 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=40.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 281 LETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHE 341 (630)
Q Consensus 281 ~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~ 341 (630)
++.+..|+.+++|-+++... ++...+--++|+++..-|..-..+|+.|+++.-
T Consensus 70 ~Eis~~L~~vieELdqi~~~--------~~~~~d~K~kiL~dL~HLE~Vv~~KIaEIe~dl 122 (125)
T PF11944_consen 70 SEISPNLRYVIEELDQITGR--------EQAEVDLKQKILDDLRHLEKVVNSKIAEIERDL 122 (125)
T ss_pred hhccHHHHHHHHHHHHHHcc--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888888762 233455668899999989888999999888753
No 297
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=21.52 E-value=1.8e+02 Score=31.05 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhchhHHhh-hHHhHHHhhhhhHHHhh
Q 038527 387 KEEKEKLRRKIIELQKGLDAKQA-LELEIEQKRGTIQVMKH 426 (630)
Q Consensus 387 krEKe~~~~kil~LEkqLd~kQ~-LELEi~qlkg~L~vmKh 426 (630)
+.|.+++..++.+|..++..... |+.|.++|+..|.....
T Consensus 72 ~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~~~ 112 (283)
T TIGR00219 72 EYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSPLS 112 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 46777888888888666666555 99999999998887654
No 298
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=21.49 E-value=74 Score=22.44 Aligned_cols=24 Identities=13% Similarity=0.182 Sum_probs=18.8
Q ss_pred CeeeccCCCCCCccccchHHHHhhhhc
Q 038527 38 TAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
+.|.|.+|.-. +-+...+.+|-.|
T Consensus 2 ~~~~C~~C~~~---~~~~~~~~~H~~g 25 (35)
T smart00451 2 GGFYCKLCNVT---FTDEISVEAHLKG 25 (35)
T ss_pred cCeEccccCCc---cCCHHHHHHHHCh
Confidence 56999999743 5578888999666
No 299
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=21.36 E-value=5.4e+02 Score=22.22 Aligned_cols=47 Identities=19% Similarity=0.313 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhH
Q 038527 313 HDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLH 359 (630)
Q Consensus 313 ~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~ 359 (630)
...+++++.+|..|+.-|.---..+..|+..|..-...-..+|.-+.
T Consensus 5 ~~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~ 51 (68)
T PF11577_consen 5 QQQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLE 51 (68)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999988888888888888876655555554443
No 300
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.31 E-value=1.4e+03 Score=27.02 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=10.0
Q ss_pred HHHHhCCCCCcccccccCCCC
Q 038527 149 DEFRSKGFNPLKVHPLWSRRG 169 (630)
Q Consensus 149 ~~~~~~GF~p~kv~~l~g~~G 169 (630)
+.+.. +-|..+..++.++|
T Consensus 137 ~~i~~--ilp~~~~~~FfFDG 155 (650)
T TIGR03185 137 EFINE--LLPLELADLFFFDG 155 (650)
T ss_pred HHHHH--hCCHhHHHHhcccH
Confidence 34444 55655555555553
No 301
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=21.29 E-value=75 Score=28.38 Aligned_cols=33 Identities=6% Similarity=0.180 Sum_probs=17.6
Q ss_pred CCceEEecCCeeeccCCCCCCccccchHHHHhhhhcc
Q 038527 29 GDLKVEVSETAYRCPFCRGKKETDYLYKELLQHASDV 65 (630)
Q Consensus 29 g~~kVk~~~~~~~CP~C~~kkK~~y~~~~LLqHA~gv 65 (630)
.++.|....+.|+|=.|+. ..+.-+|++...+.
T Consensus 44 pS~~i~~~k~~~~Cf~Cg~----~Gd~i~~v~~~~~~ 76 (97)
T PF01807_consen 44 PSFSINPDKNRFKCFGCGK----GGDVIDFVMKYEGC 76 (97)
T ss_dssp --EEEETTTTEEEETTT------EE-HHHHHHHHHT-
T ss_pred CceEEECCCCeEEECCCCC----CCcHHhHHHHHhCC
Confidence 3445555556666666653 25677788776665
No 302
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=21.21 E-value=1.3e+03 Score=26.61 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhhhC
Q 038527 573 QVHNAVALAQSEMNQYN 589 (630)
Q Consensus 573 ev~~aV~~Al~E~neyN 589 (630)
.|+.-|.+|+.-|.-|.
T Consensus 468 ~~~~r~~~a~~~iD~~~ 484 (511)
T PF09787_consen 468 GVARRVKRAASVIDSFS 484 (511)
T ss_pred hHHHHHHHHHHHHhHhh
Confidence 57888999999998875
No 303
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=21.17 E-value=62 Score=21.28 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=17.8
Q ss_pred eeccCCCCCCccccchHHHHhhhhc
Q 038527 40 YRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 40 ~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
|.|+.|.. .+.+...|.+|-.|
T Consensus 1 ~~C~~C~~---~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNK---SFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTE---EESSHHHHHHHHTT
T ss_pred CCCCCCCC---CcCCHHHHHHHHCc
Confidence 78999953 48889999999655
No 304
>PLN02678 seryl-tRNA synthetase
Probab=20.95 E-value=6.2e+02 Score=29.05 Aligned_cols=52 Identities=25% Similarity=0.373 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhcc-CCccccc--------eeecCC
Q 038527 431 NVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEG-RTRATIG--------VKRMGE 500 (630)
Q Consensus 431 d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~~l~~~-~~~~~Ig--------iKrmGe 500 (630)
-.+++.++.+|.+++...+.++ +++++...++...|..+ ....+|| |++.|.
T Consensus 73 ~~~l~~~~~~Lk~ei~~le~~~------------------~~~~~~l~~~~~~iPNi~~~~VP~G~de~~n~~vr~~g~ 133 (448)
T PLN02678 73 ATELIAETKELKKEITEKEAEV------------------QEAKAALDAKLKTIGNLVHDSVPVSNDEANNAVVRTWGE 133 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhCCCCCCccCCCCCCcCCCEEEEEEcC
Confidence 3456677777777776666665 35566666677777766 3333333 677775
No 305
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.83 E-value=1.1e+03 Score=25.67 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 038527 435 QEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKEL 480 (630)
Q Consensus 435 ~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~l 480 (630)
++++.+++.+|.+....++...+.-+. .+.++++|++.+
T Consensus 224 ~~~l~e~~~~l~~l~~~I~~~~~~k~e-------~~~~I~~ae~~~ 262 (312)
T smart00787 224 VKKLEELEEELQELESKIEDLTNKKSE-------LNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 334455555555444444433333333 346677776643
No 306
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=20.52 E-value=5.9e+02 Score=29.26 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=42.8
Q ss_pred CCcChhhHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHH
Q 038527 240 DLKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEM 297 (630)
Q Consensus 240 dLKTv~ei~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l 297 (630)
|++.+-++++.+.-+..--+..|+.+-...|+|++-|+++|...+.-|.+-=.|-+.|
T Consensus 108 Di~~~l~gvnSGLvrAKDSItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeEL 165 (558)
T PF15358_consen 108 DITELLEGVNSGLVRAKDSITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEEL 165 (558)
T ss_pred cHHHHHhhhcccceecccchhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHH
Confidence 4444555555555555556788999999999999999999999988887665544443
No 307
>PF03804 DUF325: Viral domain of unknown function; InterPro: IPR003225 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.36 E-value=54 Score=28.14 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.0
Q ss_pred CccccceeecCCCCChHHHHHHHh
Q 038527 489 TRATIGVKRMGEIDNRPFLAAAKA 512 (630)
Q Consensus 489 ~~~~IgiKrmGeld~~~f~~ac~~ 512 (630)
.-++--|.|.|-+|-..|+.||+.
T Consensus 32 kvt~~dV~RFgf~dRnalv~ACM~ 55 (71)
T PF03804_consen 32 KVTHADVRRFGFLDRNALVSACMA 55 (71)
T ss_pred CccHhHHHHhCCCcHHHHHHHHHh
Confidence 346678999999999999999986
No 308
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=20.17 E-value=1.4e+03 Score=26.52 Aligned_cols=203 Identities=22% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q 038527 259 VTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQM-------DEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKA----- 326 (630)
Q Consensus 259 v~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk-------~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl----- 326 (630)
...|.+.|..-.+.-+.+.-.....-.+-.-||+++ ..+.-.|.+|-..++-.--..+|..+.+.+-|
T Consensus 45 ~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQaraeqeeEfisntLlkkiqal~keketla~~Ye 124 (552)
T KOG2129|consen 45 GESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAEQEEEFISNTLLKKIQALFKEKETLATVYE 124 (552)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccchHHHHHHHHHHHHHHHhhccccccchhhh
Q ss_pred ------HHHHHHHHHHHH-HHHHHHHHHHhhcHHHHHhhHHHHHHh------HhhhHHHhhhhHHHHHHHHHHHHHHHHH
Q 038527 327 ------TSQLEAQKMQLE-EHEKQLQYREAKNETERKKLHSEKIMN------ERATLEQKKADEKVWRLAQVHKEEKEKL 393 (630)
Q Consensus 327 ------~~eLe~k~~eL~-~r~k~L~~~~a~~~~er~kl~~E~~kn------~lA~~EQ~kade~vlkL~e~hkrEKe~~ 393 (630)
...|-.+...|. .+|.-=.-++..-+.-+.||-.-++|. +--++||-+.. ...|--.-.+|-|++
T Consensus 125 ~eee~lTn~Lsrkl~qLr~ek~~lEq~leqeqef~vnKlm~ki~Klen~t~~kq~~leQLRre--~V~lentlEQEqEal 202 (552)
T KOG2129|consen 125 VEEEFLTNPLSRKLKQLRHEKLPLEQLLEQEQEFFVNKLMNKIRKLENKTLLKQNTLEQLRRE--AVQLENTLEQEQEAL 202 (552)
T ss_pred hhhhhccCchhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhHHHHHHH--HHHHhhHHHHHHHHH
Q ss_pred HHHHHHHHhchhHH---------------------------------------hhhHHhHHHhhhhhHH------Hhhc-
Q 038527 394 RRKIIELQKGLDAK---------------------------------------QALELEIEQKRGTIQV------MKHM- 427 (630)
Q Consensus 394 ~~kil~LEkqLd~k---------------------------------------Q~LELEi~qlkg~L~v------mKh~- 427 (630)
.|++.+-=.+|.+. ++|.-||++|+-.|-- .|-|
T Consensus 203 vN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~q 282 (552)
T KOG2129|consen 203 VNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQ 282 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -ccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHH
Q 038527 428 -REENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRE 466 (630)
Q Consensus 428 -~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ke 466 (630)
..|..++......|+.+| +.+|+.-|+|++-|.-+|
T Consensus 283 y~~Ee~~~reen~rlQrkL---~~e~erRealcr~lsEse 319 (552)
T KOG2129|consen 283 YRAEEVDHREENERLQRKL---INELERREALCRMLSESE 319 (552)
T ss_pred HHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhh
Done!