Query 038527
Match_columns 630
No_of_seqs 173 out of 195
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 20:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038527.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038527hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e8u_A Putative uncharacterize 100.0 1.6E-64 5.4E-69 484.3 13.4 171 111-281 2-172 (172)
2 1i84_S Smooth muscle myosin he 94.8 0.094 3.2E-06 63.1 10.8 9 18-26 554-562 (1184)
3 2v71_A Nuclear distribution pr 94.3 4.4 0.00015 39.6 21.6 154 258-422 11-171 (189)
4 2dfs_A Myosin-5A; myosin-V, in 92.7 1.4 4.8E-05 52.8 15.5 15 327-341 923-937 (1080)
5 1i84_S Smooth muscle myosin he 92.1 0.39 1.3E-05 57.9 9.9 19 172-190 769-787 (1184)
6 2fxo_A Myosin heavy chain, car 91.7 5.2 0.00018 36.3 14.7 41 440-480 80-120 (129)
7 3oja_B Anopheles plasmodium-re 91.7 2.4 8.3E-05 46.2 14.8 22 384-405 561-582 (597)
8 2dfs_A Myosin-5A; myosin-V, in 89.7 4.7 0.00016 48.4 15.9 18 388-405 977-994 (1080)
9 3vkg_A Dynein heavy chain, cyt 88.5 48 0.0016 44.4 24.8 64 283-346 1893-1959(3245)
10 1wez_A HnRNP H', FTP-3, hetero 86.3 0.49 1.7E-05 40.4 3.5 59 121-191 15-74 (102)
11 3vkg_A Dynein heavy chain, cyt 86.1 1.1E+02 0.0037 41.2 26.1 47 299-346 1920-1966(3245)
12 3na7_A HP0958; flagellar bioge 86.0 29 0.001 34.5 18.1 14 471-484 160-173 (256)
13 3ghg_A Fibrinogen alpha chain; 85.7 5.4 0.00019 44.3 12.0 88 246-333 53-143 (562)
14 2lmi_A GRSF-1, G-rich sequence 85.3 0.97 3.3E-05 38.5 4.9 60 121-192 11-75 (107)
15 2cq3_A RNA-binding protein 9; 85.0 1.4 4.8E-05 36.8 5.6 49 122-181 16-65 (103)
16 2dnn_A RNA-binding protein 12; 84.1 1 3.5E-05 39.3 4.6 60 122-193 17-77 (109)
17 2dgw_A Probable RNA-binding pr 83.6 1.6 5.4E-05 35.6 5.3 58 122-191 11-69 (91)
18 2lxi_A RNA-binding protein 10; 82.8 1.8 6.1E-05 35.9 5.4 57 123-189 3-61 (91)
19 2cpy_A RNA-binding protein 12; 81.2 1.6 5.5E-05 37.5 4.6 58 122-191 16-76 (114)
20 2dha_A FLJ20171 protein; RRM d 81.2 1.7 5.7E-05 38.9 4.8 58 121-190 23-86 (123)
21 2hgm_A HNRPF protein, heteroge 81.0 1.7 5.8E-05 39.2 4.9 58 122-191 43-103 (126)
22 2cqi_A Nucleolysin TIAR; RNA r 80.8 2.1 7.2E-05 35.7 5.1 57 122-190 16-73 (103)
23 2err_A Ataxin-2-binding protei 80.5 3.1 0.0001 35.5 6.1 52 122-184 30-82 (109)
24 2fxo_A Myosin heavy chain, car 80.4 33 0.0011 30.9 17.5 94 265-363 21-114 (129)
25 2hgn_A Heterogeneous nuclear r 78.8 1.1 3.7E-05 41.0 2.9 56 122-189 47-103 (139)
26 2db1_A Heterogeneous nuclear r 78.4 2.5 8.5E-05 36.8 5.0 58 122-191 18-80 (118)
27 2e5j_A Methenyltetrahydrofolat 78.4 2.5 8.7E-05 34.9 4.8 49 122-183 20-68 (97)
28 1wg5_A Heterogeneous nuclear r 78.3 2.5 8.7E-05 35.6 4.9 80 122-227 16-98 (104)
29 1x4a_A Splicing factor, argini 77.4 3 0.0001 35.1 5.1 56 122-189 23-78 (109)
30 1wi8_A EIF-4B, eukaryotic tran 77.1 2.4 8.3E-05 35.4 4.4 60 121-192 15-77 (104)
31 3d2w_A TAR DNA-binding protein 77.0 3.5 0.00012 34.0 5.3 48 121-182 11-59 (89)
32 3ghg_A Fibrinogen alpha chain; 76.7 23 0.0008 39.4 12.9 79 254-336 82-160 (562)
33 2ywk_A Putative RNA-binding pr 75.4 5.9 0.0002 32.2 6.2 57 122-190 17-75 (95)
34 2cpe_A RNA-binding protein EWS 75.3 4.5 0.00015 34.2 5.6 57 122-190 16-83 (113)
35 4f25_A Polyadenylate-binding p 75.2 2.4 8.4E-05 36.5 4.0 54 124-189 8-62 (115)
36 1deq_A Fibrinogen (alpha chain 75.1 51 0.0018 35.3 14.6 88 249-336 59-149 (390)
37 2ek1_A RNA-binding protein 12; 74.6 3.3 0.00011 33.7 4.5 58 121-190 15-75 (95)
38 3ulh_A THO complex subunit 4; 73.9 4.9 0.00017 33.5 5.5 49 122-181 30-80 (107)
39 3nmr_A Cugbp ELAV-like family 72.7 4.8 0.00016 35.7 5.4 50 123-183 97-148 (175)
40 2v71_A Nuclear distribution pr 72.6 74 0.0025 31.0 20.9 136 325-480 42-177 (189)
41 3tnu_A Keratin, type I cytoske 72.5 44 0.0015 30.1 11.8 39 270-308 5-43 (131)
42 2dng_A Eukaryotic translation 71.7 3.7 0.00013 34.2 4.2 59 121-191 15-75 (103)
43 2cph_A RNA binding motif prote 71.3 6.4 0.00022 32.7 5.6 51 122-183 16-70 (107)
44 3lqv_A PRE-mRNA branch site pr 71.1 5.4 0.00018 33.8 5.1 56 123-190 10-65 (115)
45 1wel_A RNA-binding protein 12; 71.0 4.4 0.00015 35.2 4.6 57 122-190 26-85 (124)
46 2dgv_A HnRNP M, heterogeneous 70.8 5.6 0.00019 32.1 5.0 57 122-190 9-66 (92)
47 2hgl_A HNRPF protein, heteroge 69.6 4.5 0.00016 36.6 4.6 58 122-191 45-107 (136)
48 2cqp_A RNA-binding protein 12; 69.6 5 0.00017 32.9 4.5 57 121-189 15-74 (98)
49 3tnu_B Keratin, type II cytosk 69.5 63 0.0022 29.0 12.5 39 270-308 3-41 (129)
50 2elu_A Zinc finger protein 406 69.3 1.7 5.9E-05 31.3 1.3 22 40-64 10-31 (37)
51 2dnh_A Bruno-like 5, RNA bindi 69.2 7 0.00024 32.5 5.3 52 121-183 15-68 (105)
52 1s79_A Lupus LA protein; RRM, 69.1 7.3 0.00025 33.2 5.5 57 122-190 12-70 (103)
53 1p7a_A BF3, BKLF, kruppel-like 69.1 2.7 9.3E-05 27.8 2.3 26 35-63 7-32 (37)
54 3o0z_A RHO-associated protein 68.8 84 0.0029 30.1 17.8 16 389-404 119-134 (168)
55 2dgp_A Bruno-like 4, RNA bindi 68.4 7.3 0.00025 32.4 5.3 60 122-193 14-77 (106)
56 2do4_A Squamous cell carcinoma 68.2 7.1 0.00024 32.2 5.2 56 122-189 18-75 (100)
57 4a8x_A RNA-binding protein wit 68.0 6.2 0.00021 31.4 4.6 53 121-184 4-60 (88)
58 2m0f_A Zinc finger and BTB dom 67.9 2.6 8.9E-05 25.8 1.9 23 38-63 1-23 (29)
59 2cq4_A RNA binding motif prote 66.7 11 0.00037 31.9 6.1 61 121-193 25-88 (114)
60 3na7_A HP0958; flagellar bioge 66.7 1E+02 0.0036 30.4 21.1 32 377-408 93-124 (256)
61 2kt5_A RNA and export factor-b 66.7 8.9 0.0003 33.0 5.7 57 122-190 36-94 (124)
62 1uaw_A Mouse-musashi-1; RNP-ty 66.1 7.3 0.00025 30.3 4.6 57 123-191 2-61 (77)
63 2kvh_A Zinc finger and BTB dom 65.6 3.4 0.00012 25.3 2.1 22 38-62 2-23 (27)
64 3bs9_A Nucleolysin TIA-1 isofo 65.5 8.3 0.00028 30.7 4.9 57 122-190 7-66 (87)
65 2la6_A RNA-binding protein FUS 65.5 8.3 0.00028 31.8 5.0 58 121-190 13-81 (99)
66 1x5t_A Splicing factor 3B subu 65.3 11 0.00038 30.5 5.8 57 122-190 6-66 (96)
67 2rs2_A Musashi-1, RNA-binding 65.3 7.7 0.00026 33.0 4.9 58 121-190 25-85 (109)
68 2xs2_A Deleted in azoospermia- 65.2 7.3 0.00025 32.2 4.6 57 122-190 10-68 (102)
69 1rk8_A CG8781-PA, CG8781-PA pr 64.9 6.8 0.00023 35.7 4.8 58 121-190 72-132 (165)
70 2dnz_A Probable RNA-binding pr 64.9 10 0.00034 30.8 5.4 56 123-190 7-65 (95)
71 2cpf_A RNA binding motif prote 64.2 5.8 0.0002 32.5 3.8 48 123-181 7-60 (98)
72 1x4h_A RNA-binding protein 28; 64.1 11 0.00036 31.6 5.5 57 122-190 16-75 (111)
73 1x5s_A Cold-inducible RNA-bind 64.0 8.6 0.00029 31.7 4.9 49 122-181 13-64 (102)
74 1c1g_A Tropomyosin; contractIl 63.4 94 0.0032 28.7 32.0 12 441-452 221-232 (284)
75 2dnl_A Cytoplasmic polyadenyla 63.4 7.1 0.00024 33.4 4.3 49 123-182 10-63 (114)
76 2do0_A HnRNP M, heterogeneous 63.3 9.5 0.00032 32.1 5.1 56 123-190 17-74 (114)
77 2lkz_A RNA-binding protein 5; 62.8 8.5 0.00029 32.5 4.6 51 123-184 11-66 (95)
78 2jvr_A Nucleolar protein 3; RN 62.5 9.6 0.00033 33.3 5.1 57 121-189 28-84 (111)
79 2m0d_A Zinc finger and BTB dom 62.3 4.1 0.00014 25.0 2.0 23 38-63 2-24 (30)
80 1whw_A Hypothetical protein ri 62.2 13 0.00046 30.3 5.7 50 122-182 9-61 (99)
81 2x1f_A MRNA 3'-END-processing 62.2 13 0.00043 30.4 5.6 49 123-182 4-55 (96)
82 2elt_A Zinc finger protein 406 62.2 4.1 0.00014 26.6 2.1 25 36-63 6-30 (36)
83 2mss_A Protein (musashi1); RNA 62.1 13 0.00046 28.7 5.4 55 124-190 2-59 (75)
84 2d9p_A Polyadenylate-binding p 62.1 6.9 0.00024 32.4 3.9 49 122-181 16-65 (103)
85 2elr_A Zinc finger protein 406 62.0 4.3 0.00015 26.5 2.2 26 35-63 5-30 (36)
86 2els_A Zinc finger protein 406 61.5 4.3 0.00015 26.6 2.1 25 36-63 6-30 (36)
87 2fc9_A NCL protein; structure 61.3 7.8 0.00027 32.0 4.1 56 121-190 15-71 (101)
88 2dnm_A SRP46 splicing factor; 61.2 12 0.00039 31.0 5.2 57 122-190 14-73 (103)
89 3beg_B Splicing factor, argini 61.0 16 0.00055 31.3 6.2 53 121-190 16-69 (115)
90 1x5u_A Splicing factor 3B subu 61.0 12 0.00042 30.9 5.3 51 121-182 15-68 (105)
91 3ucg_A Polyadenylate-binding p 60.8 13 0.00044 29.7 5.2 57 123-191 8-67 (89)
92 3md1_A Nuclear and cytoplasmic 60.4 12 0.0004 29.5 4.8 57 122-190 2-61 (83)
93 2fy1_A RNA-binding motif prote 60.4 13 0.00046 31.9 5.6 48 123-181 9-58 (116)
94 3sde_A Paraspeckle component 1 60.1 9.7 0.00033 37.1 5.2 69 122-201 97-168 (261)
95 2dgo_A Cytotoxic granule-assoc 60.0 11 0.00037 31.8 4.9 49 122-181 16-67 (115)
96 2j76_E EIF-4B, EIF4B, eukaryot 60.0 7.2 0.00025 32.4 3.7 59 122-192 20-81 (100)
97 2elp_A Zinc finger protein 406 59.8 4.7 0.00016 26.6 2.0 25 36-63 6-31 (37)
98 2dgs_A DAZ-associated protein 59.7 13 0.00046 30.4 5.3 57 123-191 12-71 (99)
99 2elx_A Zinc finger protein 406 59.6 4.9 0.00017 25.9 2.1 26 36-64 4-29 (35)
100 2dit_A HIV TAT specific factor 59.5 6.6 0.00023 33.5 3.4 59 122-183 16-76 (112)
101 2cqb_A Peptidyl-prolyl CIS-tra 59.4 12 0.0004 30.8 4.9 56 122-189 13-71 (102)
102 2e5h_A Zinc finger CCHC-type a 59.3 11 0.00037 30.5 4.5 48 123-181 18-68 (94)
103 2jwn_A Embryonic polyadenylate 59.2 11 0.00037 32.3 4.8 59 121-191 36-97 (124)
104 1oo0_B CG8781-PA, drosophila Y 58.7 14 0.00046 31.0 5.2 57 122-190 27-86 (110)
105 1iqt_A AUF1, heterogeneous nuc 58.7 9.6 0.00033 29.5 4.0 55 124-190 2-59 (75)
106 2krb_A Eukaryotic translation 58.5 14 0.00047 29.3 5.0 55 123-182 3-58 (81)
107 2dh8_A DAZ-associated protein 58.5 9.8 0.00034 31.6 4.3 58 122-191 17-77 (105)
108 2ghp_A U4/U6 snRNA-associated 58.4 10 0.00035 37.0 5.1 58 122-191 42-100 (292)
109 1x4c_A Splicing factor, argini 58.3 12 0.0004 31.6 4.8 53 121-190 15-68 (108)
110 2cqd_A RNA-binding region cont 58.3 15 0.00053 31.0 5.6 49 122-181 18-69 (116)
111 3ns6_A Eukaryotic translation 58.2 6.7 0.00023 32.8 3.2 62 123-190 8-72 (100)
112 4fxv_A ELAV-like protein 1; RN 58.2 13 0.00046 31.1 5.1 49 123-182 21-72 (99)
113 2wbr_A GW182, gawky, LD47780P; 58.1 8.6 0.00029 33.2 3.9 43 126-182 12-54 (89)
114 2kvf_A Zinc finger and BTB dom 58.1 5.4 0.00018 24.4 2.0 23 38-63 2-24 (28)
115 1ard_A Yeast transcription fac 57.8 5.4 0.00018 24.3 2.0 22 39-63 2-23 (29)
116 1srk_A Zinc finger protein ZFP 57.6 5.5 0.00019 25.8 2.1 26 36-64 4-29 (35)
117 2hvz_A Splicing factor, argini 57.6 15 0.00053 30.1 5.3 57 123-194 2-60 (101)
118 2elq_A Zinc finger protein 406 57.5 5.6 0.00019 26.1 2.1 25 36-63 6-30 (36)
119 1p27_B RNA-binding protein 8A; 57.4 11 0.00039 31.1 4.5 50 122-182 24-76 (106)
120 3ex7_B RNA-binding protein 8A; 57.4 14 0.00049 31.6 5.3 56 122-189 23-81 (126)
121 2kvg_A Zinc finger and BTB dom 57.2 4.2 0.00014 25.1 1.3 22 38-62 2-23 (27)
122 2f3j_A RNA and export factor b 56.9 14 0.00049 34.5 5.5 50 122-182 89-140 (177)
123 3nmr_A Cugbp ELAV-like family 56.7 14 0.00047 32.6 5.2 50 123-183 5-59 (175)
124 3mdf_A Peptidyl-prolyl CIS-tra 56.7 14 0.00047 29.2 4.7 51 122-183 8-61 (85)
125 2cqc_A Arginine/serine-rich sp 56.7 13 0.00046 29.9 4.7 50 122-182 16-68 (95)
126 1wf0_A TDP-43, TAR DNA-binding 56.6 9.2 0.00032 30.8 3.7 46 123-182 7-53 (88)
127 3md3_A Nuclear and cytoplasmic 55.9 14 0.00047 32.2 5.0 55 123-189 2-58 (166)
128 2dgx_A KIAA0430 protein; RRM d 55.9 13 0.00044 30.6 4.5 48 123-182 11-63 (96)
129 2ku7_A MLL1 PHD3-CYP33 RRM chi 55.8 17 0.00059 31.4 5.5 50 122-182 64-116 (140)
130 2div_A TRNA selenocysteine ass 55.8 15 0.00051 30.1 4.9 57 122-190 10-70 (99)
131 1rik_A E6APC1 peptide; E6-bind 55.2 5.9 0.0002 24.2 1.8 22 39-63 2-23 (29)
132 2ki2_A SS-DNA binding protein 55.2 9.4 0.00032 30.7 3.5 49 123-182 3-54 (90)
133 3bas_A Myosin heavy chain, str 55.0 97 0.0033 26.2 11.7 65 263-346 20-84 (89)
134 3brv_B NF-kappa-B essential mo 54.6 65 0.0022 26.8 8.3 49 310-358 4-52 (70)
135 2elv_A Zinc finger protein 406 54.4 6.8 0.00023 25.6 2.1 26 36-64 6-31 (36)
136 2m0e_A Zinc finger and BTB dom 54.3 5.8 0.0002 24.0 1.7 22 39-63 2-23 (29)
137 2eos_A B-cell lymphoma 6 prote 54.3 6.9 0.00023 26.7 2.2 27 35-64 7-33 (42)
138 1klr_A Zinc finger Y-chromosom 54.2 6.7 0.00023 23.9 2.0 23 39-64 2-24 (30)
139 2elo_A Zinc finger protein 406 54.2 5.3 0.00018 26.3 1.5 27 35-64 5-31 (37)
140 3tyt_A Heterogeneous nuclear r 54.2 20 0.00069 34.0 6.2 66 123-200 125-193 (205)
141 3s7r_A Heterogeneous nuclear r 54.1 18 0.00063 28.7 5.1 58 122-191 12-72 (87)
142 2jrs_A RNA-binding protein 39; 53.7 14 0.00046 31.5 4.4 56 122-189 27-85 (108)
143 2en2_A B-cell lymphoma 6 prote 53.6 6.4 0.00022 26.7 1.9 26 35-63 7-32 (42)
144 2g4b_A Splicing factor U2AF 65 53.4 22 0.00075 31.4 5.9 53 121-184 94-149 (172)
145 2elm_A Zinc finger protein 406 53.2 7.1 0.00024 26.0 2.1 23 36-61 6-28 (37)
146 2cq0_A Eukaryotic translation 53.1 10 0.00035 31.4 3.5 51 122-183 16-69 (103)
147 1why_A Hypothetical protein ri 52.9 18 0.00061 29.6 4.9 54 122-190 18-71 (97)
148 3u59_A Tropomyosin beta chain; 52.9 1.1E+02 0.0036 26.5 10.0 71 388-462 16-91 (101)
149 3v4m_A Splicing factor U2AF 65 52.5 10 0.00035 32.5 3.5 61 122-184 6-72 (105)
150 1paa_A Yeast transcription fac 52.5 6.8 0.00023 24.1 1.8 20 39-61 2-21 (30)
151 2cqg_A TDP-43, TAR DNA-binding 52.5 16 0.00053 30.2 4.5 57 122-190 16-75 (103)
152 2cpz_A CUG triplet repeat RNA- 52.3 16 0.00053 30.9 4.6 56 122-189 26-84 (115)
153 2voo_A Lupus LA protein; RNA-b 52.0 15 0.00052 34.7 4.9 50 122-182 110-161 (193)
154 2ept_A Zinc finger protein 32; 51.8 7.7 0.00026 26.2 2.1 27 35-64 6-32 (41)
155 3p5t_L Cleavage and polyadenyl 51.7 22 0.00075 28.8 5.2 55 123-189 3-62 (90)
156 2epc_A Zinc finger protein 32; 51.5 7.4 0.00025 26.3 2.0 28 34-64 6-33 (42)
157 3hnw_A Uncharacterized protein 51.4 1.1E+02 0.0039 28.0 10.5 22 384-405 113-134 (138)
158 1x5o_A RNA binding motif, sing 51.3 16 0.00054 30.8 4.4 58 121-190 25-84 (114)
159 1fjc_A Nucleolin RBD2, protein 51.2 8.7 0.0003 31.3 2.7 54 123-190 18-71 (96)
160 4f02_A Polyadenylate-binding p 51.2 13 0.00043 35.1 4.2 55 123-189 105-160 (213)
161 1h2v_Z 20 kDa nuclear CAP bind 51.2 16 0.00055 32.7 4.7 58 121-190 39-99 (156)
162 2fc8_A NCL protein; structure 51.2 11 0.00038 31.0 3.4 55 122-190 16-72 (102)
163 3s8s_A Histone-lysine N-methyl 51.1 20 0.00067 30.8 5.1 56 123-190 8-66 (110)
164 1x4b_A Heterogeneous nuclear r 51.1 18 0.00061 30.6 4.8 58 122-191 28-88 (116)
165 2hzc_A Splicing factor U2AF 65 50.8 16 0.00055 28.9 4.2 49 121-182 6-64 (87)
166 1m1j_A Fibrinogen alpha subuni 50.7 2.7E+02 0.0092 30.7 14.6 65 247-311 55-122 (491)
167 2ytb_A Zinc finger protein 32; 50.7 8.1 0.00028 26.1 2.1 27 35-64 7-33 (42)
168 1njq_A Superman protein; zinc- 50.5 7.9 0.00027 26.0 2.0 26 36-64 3-28 (39)
169 2m2b_A RNA-binding protein 10; 50.4 15 0.0005 32.2 4.2 59 123-193 25-88 (131)
170 1p1t_A Cleavage stimulation fa 50.4 16 0.00054 30.1 4.2 49 123-182 10-61 (104)
171 2dq0_A Seryl-tRNA synthetase; 50.3 77 0.0026 34.4 10.7 54 429-500 69-131 (455)
172 2khc_A Testis-specific RNP-typ 49.7 17 0.00058 30.7 4.4 51 122-183 41-94 (118)
173 2ghp_A U4/U6 snRNA-associated 49.7 19 0.00064 35.1 5.3 63 121-193 117-181 (292)
174 2kn4_A Immunoglobulin G-bindin 49.7 20 0.00068 31.9 5.1 57 121-189 70-129 (158)
175 2eou_A Zinc finger protein 473 49.6 8.3 0.00028 26.6 2.0 28 33-63 6-33 (44)
176 2ysp_A Zinc finger protein 224 49.6 6.7 0.00023 27.3 1.5 30 32-64 5-34 (46)
177 1x4e_A RNA binding motif, sing 49.6 17 0.00059 28.8 4.2 59 123-193 7-69 (85)
178 3u1c_A Tropomyosin alpha-1 cha 49.5 1.3E+02 0.0044 26.1 10.0 72 388-462 16-91 (101)
179 2yu5_A Zinc finger protein 473 49.4 8 0.00028 26.6 1.9 27 35-64 8-34 (44)
180 2enf_A Zinc finger protein 347 49.2 9.1 0.00031 26.6 2.2 27 35-64 8-34 (46)
181 2em9_A Zinc finger protein 224 49.1 8.3 0.00028 26.7 2.0 28 34-64 7-34 (46)
182 2el5_A Zinc finger protein 268 49.0 8.6 0.00029 26.1 2.0 27 35-64 6-32 (42)
183 1m1j_C Fibrinogen gamma chain; 48.9 73 0.0025 34.4 10.0 76 219-294 2-93 (409)
184 1l3k_A Heterogeneous nuclear r 48.8 20 0.0007 32.3 5.1 49 122-181 105-156 (196)
185 2elz_A Zinc finger protein 224 48.7 9.5 0.00033 26.5 2.2 29 33-64 6-34 (46)
186 2emb_A Zinc finger protein 473 48.6 8.8 0.0003 26.4 2.0 28 34-64 7-34 (44)
187 2emi_A Zinc finger protein 484 48.6 8.9 0.0003 26.6 2.0 27 35-64 8-34 (46)
188 2dnq_A RNA-binding protein 4B; 48.5 22 0.00074 28.6 4.7 50 123-189 10-59 (90)
189 1znf_A 31ST zinc finger from X 48.5 9.2 0.00031 23.0 1.9 22 39-63 1-22 (27)
190 2yts_A Zinc finger protein 484 48.4 9.1 0.00031 26.5 2.1 27 35-64 8-34 (46)
191 2eq1_A Zinc finger protein 347 48.2 9.4 0.00032 26.5 2.1 27 35-64 8-34 (46)
192 2yte_A Zinc finger protein 473 48.2 9.6 0.00033 25.7 2.1 27 35-64 6-32 (42)
193 3pgw_S U1-70K; protein-RNA com 48.1 17 0.00058 39.0 5.1 56 122-189 103-161 (437)
194 2cpd_A Apobec-1 stimulating pr 48.0 25 0.00085 28.8 5.0 54 122-190 16-69 (99)
195 2kxn_B Transformer-2 protein h 47.9 19 0.00064 31.8 4.5 56 123-190 48-106 (129)
196 2cjk_A Nuclear polyadenylated 47.7 29 0.00098 30.4 5.7 58 121-190 87-147 (167)
197 2eof_A Zinc finger protein 268 47.6 9 0.00031 26.1 1.9 27 35-64 8-34 (44)
198 2go8_A Hypothetical protein YQ 47.5 15 0.0005 33.2 3.8 101 121-226 11-116 (122)
199 2en9_A Zinc finger protein 28 47.2 9.4 0.00032 26.6 2.0 28 34-64 7-34 (46)
200 2i2y_A Fusion protein consists 47.1 21 0.00072 31.7 4.8 54 122-190 74-128 (150)
201 2eow_A Zinc finger protein 347 47.1 9.8 0.00034 26.3 2.1 27 35-64 8-34 (46)
202 3ghg_C Fibrinogen gamma chain; 46.9 1.5E+02 0.0051 32.1 12.0 52 230-281 14-69 (411)
203 2ytc_A PRE-mRNA-splicing facto 46.9 24 0.0008 27.9 4.6 52 123-190 14-66 (85)
204 2ytf_A Zinc finger protein 268 46.9 9.8 0.00034 26.3 2.1 27 35-64 8-34 (46)
205 2eon_A ZFP-95, zinc finger pro 46.8 10 0.00035 26.5 2.1 27 35-64 8-34 (46)
206 2ep3_A Zinc finger protein 484 46.8 9.5 0.00033 26.4 2.0 27 35-64 8-34 (46)
207 2emg_A Zinc finger protein 484 46.6 11 0.00037 26.2 2.2 27 35-64 8-34 (46)
208 1whx_A Hypothetical protein ri 46.6 25 0.00084 30.0 5.0 48 122-183 11-58 (111)
209 2en7_A Zinc finger protein 268 46.5 9.7 0.00033 26.0 2.0 27 35-64 8-34 (44)
210 2la4_A Nuclear and cytoplasmic 46.5 24 0.00083 28.9 4.8 48 122-183 28-75 (101)
211 2ely_A Zinc finger protein 224 46.4 10 0.00035 26.4 2.1 29 33-64 6-34 (46)
212 2enh_A Zinc finger protein 28 46.3 10 0.00035 26.3 2.1 28 34-64 7-34 (46)
213 2epv_A Zinc finger protein 268 46.2 11 0.00036 26.1 2.1 28 34-64 7-34 (44)
214 3uk3_C Zinc finger protein 217 46.1 9.1 0.00031 27.6 1.8 24 37-63 2-25 (57)
215 2em3_A Zinc finger protein 28 46.0 10 0.00034 26.3 2.0 27 35-64 8-34 (46)
216 2ytp_A Zinc finger protein 484 46.0 11 0.00036 26.3 2.1 27 35-64 8-34 (46)
217 2em8_A Zinc finger protein 224 46.0 11 0.00037 26.3 2.2 28 33-63 6-33 (46)
218 2yth_A Zinc finger protein 224 45.9 12 0.0004 26.1 2.3 27 35-64 8-34 (46)
219 2ocy_A RAB guanine nucleotide 45.8 2E+02 0.0068 27.1 18.1 43 382-427 102-144 (154)
220 2eme_A Zinc finger protein 473 45.8 11 0.00036 26.1 2.1 27 35-64 8-34 (46)
221 1fje_B Nucleolin RBD12, protei 45.6 19 0.00065 32.0 4.3 56 121-190 99-154 (175)
222 2drp_A Protein (tramtrack DNA- 45.6 12 0.00042 27.8 2.6 28 34-64 5-32 (66)
223 2eov_A Zinc finger protein 484 45.4 11 0.00039 26.0 2.2 26 35-63 8-33 (46)
224 1x4g_A Nucleolysin TIAR; struc 45.4 22 0.00075 29.8 4.4 47 122-183 26-73 (109)
225 2eom_A ZFP-95, zinc finger pro 45.4 11 0.00039 26.2 2.2 27 34-63 7-33 (46)
226 2dis_A Unnamed protein product 45.3 25 0.00084 29.2 4.7 48 123-181 10-62 (109)
227 3uk3_C Zinc finger protein 217 45.3 11 0.00037 27.2 2.2 25 36-63 29-53 (57)
228 2yrj_A Zinc finger protein 473 45.2 11 0.00038 26.0 2.1 27 35-64 8-34 (46)
229 2eoz_A Zinc finger protein 473 45.1 8.5 0.00029 26.8 1.5 26 35-63 8-33 (46)
230 2eop_A Zinc finger protein 268 45.0 11 0.00039 26.0 2.1 27 35-64 8-34 (46)
231 2em6_A Zinc finger protein 224 45.0 12 0.0004 26.0 2.2 26 35-63 8-33 (46)
232 2epx_A Zinc finger protein 28 45.0 12 0.00042 25.8 2.3 27 34-63 7-33 (47)
233 2ytj_A Zinc finger protein 484 44.8 11 0.00037 26.2 2.0 27 35-64 8-34 (46)
234 1qm9_A Polypyrimidine tract-bi 44.8 25 0.00084 32.1 5.0 48 122-181 121-168 (198)
235 2yti_A Zinc finger protein 347 44.7 9.9 0.00034 26.4 1.8 27 35-64 8-34 (46)
236 2eoh_A Zinc finger protein 28 44.7 12 0.00039 26.1 2.1 27 35-64 8-34 (46)
237 2yto_A Zinc finger protein 484 44.7 11 0.00039 26.1 2.1 27 35-64 8-34 (46)
238 2em2_A Zinc finger protein 28 44.6 11 0.00038 26.2 2.1 26 35-63 8-33 (46)
239 1nu4_A U1A RNA binding domain; 44.6 9 0.00031 31.2 1.8 49 123-182 10-62 (97)
240 2eq2_A Zinc finger protein 347 44.5 11 0.00036 26.2 1.9 27 35-64 8-34 (46)
241 2xnq_A Nuclear polyadenylated 44.5 26 0.0009 29.0 4.7 44 123-182 24-68 (97)
242 2nlw_A Eukaryotic translation 44.5 25 0.00087 29.4 4.7 63 122-190 16-79 (105)
243 2yh0_A Splicing factor U2AF 65 44.1 34 0.0012 30.8 5.8 53 121-184 114-169 (198)
244 2epw_A Zinc finger protein 268 44.1 11 0.00038 26.0 2.0 27 35-64 8-34 (46)
245 2en3_A ZFP-95, zinc finger pro 43.9 11 0.00038 26.1 2.0 26 35-63 8-33 (46)
246 2em4_A Zinc finger protein 28 43.8 12 0.0004 26.1 2.0 26 35-63 8-33 (46)
247 2eoy_A Zinc finger protein 473 43.6 11 0.00039 26.1 2.0 27 35-64 8-34 (46)
248 1b7f_A Protein (SXL-lethal pro 43.6 23 0.00079 31.0 4.5 56 123-190 5-63 (168)
249 2ep1_A Zinc finger protein 484 43.6 12 0.0004 25.9 2.0 27 35-64 8-34 (46)
250 2kvi_A Nuclear polyadenylated 43.6 26 0.00088 28.7 4.5 51 123-190 12-63 (96)
251 3md3_A Nuclear and cytoplasmic 43.5 28 0.00095 30.2 4.9 50 122-182 88-140 (166)
252 2em7_A Zinc finger protein 224 43.5 11 0.00036 26.2 1.8 27 35-64 8-34 (46)
253 2ytn_A Zinc finger protein 347 43.4 12 0.00041 25.9 2.1 28 34-64 7-34 (46)
254 2ep2_A Zinc finger protein 484 43.4 12 0.0004 26.0 2.0 27 35-64 8-34 (46)
255 2eoq_A Zinc finger protein 224 43.4 12 0.00041 25.9 2.1 27 35-64 8-34 (46)
256 4gzn_C ZFP-57, zinc finger pro 43.3 11 0.00039 29.2 2.1 25 36-63 1-25 (60)
257 2em5_A ZFP-95, zinc finger pro 43.3 12 0.0004 26.0 2.0 27 35-64 8-34 (46)
258 2yrm_A B-cell lymphoma 6 prote 43.3 14 0.00048 25.4 2.4 27 35-64 6-32 (43)
259 2ytm_A Zinc finger protein 28 43.2 11 0.00039 26.2 1.9 28 33-63 6-33 (46)
260 2eq3_A Zinc finger protein 347 43.2 9.1 0.00031 26.5 1.4 27 35-64 8-34 (46)
261 3qne_A Seryl-tRNA synthetase, 43.2 1.1E+02 0.0039 33.6 10.6 56 429-502 71-135 (485)
262 2lvr_A Zinc finger and BTB dom 49.2 5 0.00017 24.7 0.0 23 38-63 2-24 (30)
263 2enc_A Zinc finger protein 224 43.1 12 0.00042 25.9 2.1 27 35-64 8-34 (46)
264 2emz_A ZFP-95, zinc finger pro 42.9 13 0.00045 25.8 2.2 26 35-63 8-33 (46)
265 1rim_A E6APC2 peptide; E6-bind 42.9 13 0.00044 24.2 2.0 23 39-64 2-24 (33)
266 1d0q_A DNA primase; zinc-bindi 42.9 25 0.00087 30.3 4.5 32 30-65 49-80 (103)
267 2dhg_A TRNA selenocysteine ass 42.8 35 0.0012 28.0 5.2 58 122-190 10-69 (104)
268 2eoj_A Zinc finger protein 268 42.8 8.4 0.00029 26.4 1.2 27 35-64 8-34 (44)
269 1b7f_A Protein (SXL-lethal pro 42.8 29 0.00099 30.3 5.0 50 121-181 89-141 (168)
270 2epu_A Zinc finger protein 32; 42.7 10 0.00034 26.3 1.5 27 35-64 8-34 (45)
271 2ene_A Zinc finger protein 347 42.7 12 0.00042 25.9 2.0 27 35-64 8-34 (46)
272 1jmt_A Splicing factor U2AF 35 42.7 37 0.0013 28.8 5.5 36 147-184 43-81 (104)
273 1x6e_A Zinc finger protein 24; 42.6 9 0.00031 29.4 1.4 26 35-63 10-35 (72)
274 2eq0_A Zinc finger protein 347 42.5 13 0.00043 25.8 2.1 27 35-64 8-34 (46)
275 2eor_A Zinc finger protein 224 42.5 12 0.00041 25.8 1.9 26 35-63 8-33 (46)
276 2emx_A Zinc finger protein 268 42.5 13 0.00044 25.5 2.1 27 35-64 6-32 (44)
277 2yso_A ZFP-95, zinc finger pro 42.2 12 0.00042 25.9 1.9 27 35-64 8-34 (46)
278 2el4_A Zinc finger protein 268 42.1 13 0.00045 25.6 2.1 27 35-64 8-34 (46)
279 2emh_A Zinc finger protein 484 42.0 12 0.00042 25.9 1.9 26 35-63 8-33 (46)
280 2eoo_A ZFP-95, zinc finger pro 41.9 13 0.00044 25.8 2.0 26 35-63 8-33 (46)
281 2eq4_A Zinc finger protein 224 41.8 13 0.00045 25.6 2.1 27 35-64 8-34 (46)
282 2emj_A Zinc finger protein 28 41.7 14 0.00047 25.7 2.2 26 35-63 8-33 (46)
283 2cpj_A Non-POU domain-containi 41.7 37 0.0013 27.7 5.2 48 122-183 16-63 (99)
284 2yu8_A Zinc finger protein 347 41.7 13 0.00044 25.7 2.0 27 34-63 7-33 (46)
285 2cpx_A Hypothetical protein FL 41.7 15 0.00053 30.8 2.8 49 122-181 26-77 (115)
286 2lvu_A Zinc finger and BTB dom 47.7 5.5 0.00019 24.1 0.0 21 39-62 2-22 (26)
287 2eml_A Zinc finger protein 28 41.6 13 0.00044 25.7 2.0 27 35-64 8-34 (46)
288 2cjk_A Nuclear polyadenylated 41.5 30 0.001 30.3 4.9 50 123-183 5-57 (167)
289 2eox_A Zinc finger protein 473 41.4 9.6 0.00033 26.2 1.3 27 35-64 8-34 (44)
290 2epz_A Zinc finger protein 28 41.3 14 0.00048 25.5 2.2 29 33-64 6-34 (46)
291 3a7p_A Autophagy protein 16; c 41.1 1.8E+02 0.0062 27.4 10.2 62 382-463 69-130 (152)
292 1bbo_A Human enhancer-binding 41.1 14 0.00047 26.6 2.2 26 36-64 26-51 (57)
293 2emy_A Zinc finger protein 268 41.1 14 0.00049 25.5 2.2 27 35-64 8-34 (46)
294 3mq9_A Bone marrow stromal ant 41.0 1.5E+02 0.0051 31.2 11.0 45 382-427 385-431 (471)
295 2jvo_A Nucleolar protein 3; nu 40.9 26 0.0009 29.7 4.2 45 121-181 31-75 (108)
296 2em0_A Zinc finger protein 224 40.9 15 0.00051 25.4 2.3 27 35-64 8-34 (46)
297 2lea_A Serine/arginine-rich sp 40.9 21 0.00072 31.6 3.7 49 122-181 48-99 (135)
298 2ytq_A Zinc finger protein 268 40.8 14 0.00046 25.7 2.0 27 35-64 8-34 (46)
299 2ytk_A Zinc finger protein 347 40.8 13 0.00045 25.7 1.9 27 35-64 8-34 (46)
300 2lvt_A Zinc finger and BTB dom 46.8 5.8 0.0002 24.5 0.0 22 39-63 2-23 (29)
301 2emf_A Zinc finger protein 484 40.6 14 0.00047 25.7 2.0 27 35-64 8-34 (46)
302 3iuf_A Zinc finger protein UBI 40.5 14 0.00048 26.4 2.1 25 36-63 4-28 (48)
303 2drp_A Protein (tramtrack DNA- 40.4 14 0.00047 27.6 2.1 25 36-63 37-61 (66)
304 2en8_A Zinc finger protein 224 40.3 14 0.00048 25.4 2.0 27 35-64 8-34 (46)
305 2cpi_A CCR4-NOT transcription 40.3 22 0.00076 30.0 3.7 58 121-190 15-81 (111)
306 2ep0_A Zinc finger protein 28 40.2 14 0.0005 25.5 2.1 27 35-64 8-34 (46)
307 2emk_A Zinc finger protein 28 40.1 15 0.00052 25.5 2.2 27 35-64 8-34 (46)
308 2emm_A ZFP-95, zinc finger pro 40.1 14 0.00048 25.5 2.0 26 35-63 8-33 (46)
309 1u6f_A Tcubp1, RNA-binding pro 40.0 29 0.00099 30.2 4.5 56 123-190 44-102 (139)
310 2el6_A Zinc finger protein 268 40.0 15 0.0005 25.5 2.1 27 35-64 8-34 (46)
311 2xdj_A Uncharacterized protein 39.8 71 0.0024 27.1 6.6 43 397-452 22-64 (83)
312 2cqh_A IGF-II mRNA-binding pro 39.8 22 0.00075 28.7 3.4 45 123-182 10-55 (93)
313 2e44_A Insulin-like growth fac 39.5 35 0.0012 27.6 4.6 55 122-190 16-72 (96)
314 2adr_A ADR1; transcription reg 39.5 14 0.00048 26.9 2.0 24 36-62 27-50 (60)
315 3ol1_A Vimentin; structural ge 39.4 2E+02 0.007 25.5 11.5 33 395-427 69-105 (119)
316 2ytt_A Zinc finger protein 473 39.3 13 0.00046 25.7 1.8 26 35-63 8-33 (46)
317 2dgt_A RNA-binding protein 30; 39.1 44 0.0015 26.9 5.1 43 122-181 11-54 (92)
318 1fxl_A Paraneoplastic encephal 38.9 35 0.0012 29.6 4.8 56 123-190 4-62 (167)
319 2ytr_A Zinc finger protein 347 38.8 14 0.00047 25.5 1.8 28 34-64 7-34 (46)
320 1yui_A GAGA-factor; complex (D 38.8 15 0.00051 26.6 2.0 26 35-63 20-45 (54)
321 2e5g_A U6 snRNA-specific termi 38.4 49 0.0017 26.8 5.4 54 123-190 10-63 (94)
322 2emp_A Zinc finger protein 347 38.4 15 0.00053 25.3 2.0 26 35-63 8-33 (46)
323 3egn_A RNA-binding protein 40; 38.4 28 0.00097 30.5 4.2 56 123-190 47-110 (143)
324 1l3k_A Heterogeneous nuclear r 38.3 31 0.0011 31.1 4.5 57 123-191 15-74 (196)
325 2ema_A Zinc finger protein 347 37.9 17 0.00057 25.2 2.1 27 35-64 8-34 (46)
326 1sjq_A Polypyrimidine tract-bi 37.8 31 0.0011 30.1 4.2 45 122-181 17-62 (105)
327 2ytg_A ZFP-95, zinc finger pro 37.7 14 0.00049 25.5 1.7 27 35-64 8-34 (46)
328 1fj7_A Nucleolin RBD1, protein 37.7 11 0.00037 31.1 1.3 59 121-191 17-77 (101)
329 1x6e_A Zinc finger protein 24; 37.6 16 0.00054 28.0 2.1 26 35-63 38-63 (72)
330 2en6_A Zinc finger protein 268 37.5 14 0.00048 25.5 1.6 28 34-64 7-34 (46)
331 3n9u_C Cleavage and polyadenyl 37.4 36 0.0012 31.1 4.9 57 122-190 56-117 (156)
332 3nmd_A CGMP dependent protein 37.4 68 0.0023 26.8 5.9 24 397-423 42-65 (72)
333 2qfj_A FBP-interacting repress 37.0 40 0.0014 30.8 5.1 58 121-190 28-88 (216)
334 2eoe_A Zinc finger protein 347 36.8 13 0.00045 25.6 1.4 27 35-64 8-34 (46)
335 2pe8_A Splicing factor 45; RRM 36.7 49 0.0017 28.2 5.3 85 123-227 10-98 (105)
336 1f2i_G Fusion of N-terminal 17 36.5 17 0.00057 27.6 2.1 22 37-61 47-68 (73)
337 2ytd_A Zinc finger protein 473 36.4 18 0.00061 25.0 2.1 27 35-64 8-34 (46)
338 2ke4_A CDC42-interacting prote 36.3 1.7E+02 0.0057 25.5 8.6 45 388-432 15-59 (98)
339 2qfj_A FBP-interacting repress 35.9 42 0.0014 30.7 5.1 48 122-180 126-176 (216)
340 1wex_A Hypothetical protein (r 35.6 43 0.0015 28.5 4.8 53 122-190 16-69 (104)
341 3mq7_A Bone marrow stromal ant 35.2 2.4E+02 0.0083 25.6 9.5 78 388-465 18-107 (121)
342 2en1_A Zinc finger protein 224 35.0 16 0.00053 25.3 1.5 27 35-64 8-34 (46)
343 2adc_A Polypyrimidine tract-bi 34.9 41 0.0014 31.9 4.9 49 122-182 152-200 (229)
344 3s6e_A RNA-binding protein 39; 34.5 37 0.0013 29.7 4.2 88 123-227 9-97 (114)
345 3hnw_A Uncharacterized protein 34.2 1.8E+02 0.006 26.7 8.9 11 328-338 35-45 (138)
346 2dnp_A RNA-binding protein 14; 34.2 37 0.0013 27.3 3.9 50 123-190 11-61 (90)
347 2dgu_A Heterogeneous nuclear r 33.7 35 0.0012 28.2 3.7 51 123-190 13-63 (103)
348 1fv5_A First zinc finger of U- 33.4 17 0.00057 25.7 1.4 24 36-62 5-28 (36)
349 1wf1_A RNA-binding protein RAL 33.0 38 0.0013 28.3 3.9 52 122-189 28-79 (110)
350 1fxl_A Paraneoplastic encephal 32.9 54 0.0019 28.3 5.1 50 122-182 89-141 (167)
351 3pgw_A U1-A; protein-RNA compl 32.9 45 0.0015 32.2 5.0 50 122-184 208-257 (282)
352 2lce_A B-cell lymphoma 6 prote 32.8 23 0.00078 27.1 2.3 26 35-63 13-38 (74)
353 2eln_A Zinc finger protein 406 32.6 23 0.00079 25.0 2.1 25 36-63 6-32 (38)
354 2lw1_A ABC transporter ATP-bin 32.6 1.1E+02 0.0037 25.8 6.6 25 434-458 61-85 (89)
355 2e7s_A RAB guanine nucleotide 32.5 2.1E+02 0.0073 26.4 9.0 44 381-427 89-132 (135)
356 3q2s_C Cleavage and polyadenyl 32.5 43 0.0015 32.4 4.8 57 122-190 69-130 (229)
357 3oja_A Leucine-rich immune mol 32.4 4.7E+02 0.016 27.5 16.3 22 299-320 324-345 (487)
358 2eps_A POZ-, at HOOK-, and zin 32.4 22 0.00076 25.8 2.1 25 36-63 9-33 (54)
359 3u1c_A Tropomyosin alpha-1 cha 32.1 1.7E+02 0.0056 25.4 7.9 64 416-482 6-69 (101)
360 2dq3_A Seryl-tRNA synthetase; 31.9 1E+02 0.0035 33.0 7.9 53 431-501 70-131 (425)
361 2dmd_A Zinc finger protein 64, 31.8 22 0.00076 28.2 2.2 26 36-64 5-30 (96)
362 2ct1_A Transcriptional repress 31.7 21 0.00071 27.6 1.9 29 32-63 8-36 (77)
363 1x5w_A Zinc finger protein 64, 31.6 23 0.00078 26.8 2.1 26 36-64 6-31 (70)
364 2epr_A POZ-, at HOOK-, and zin 31.5 19 0.00066 25.3 1.6 26 36-64 9-34 (48)
365 3smz_A Protein raver-1, ribonu 31.5 43 0.0015 32.4 4.6 53 121-183 184-238 (284)
366 2e72_A POGO transposable eleme 31.5 25 0.00085 27.4 2.2 25 36-63 9-33 (49)
367 2epq_A POZ-, at HOOK-, and zin 31.4 18 0.0006 25.0 1.3 27 35-64 6-32 (45)
368 2ad9_A Polypyrimidine tract-bi 31.4 49 0.0017 29.3 4.5 46 122-182 32-78 (119)
369 1zfd_A SWI5; DNA binding motif 31.3 27 0.00092 21.8 2.1 24 38-64 2-27 (32)
370 4dnd_A Syntaxin-10, SYN10; str 31.3 1.8E+02 0.006 26.5 8.3 73 409-485 35-118 (130)
371 1wii_A Hypothetical UPF0222 pr 30.8 14 0.00046 31.8 0.7 14 35-48 19-32 (85)
372 2lce_A B-cell lymphoma 6 prote 30.4 23 0.0008 27.0 2.0 26 35-63 41-66 (74)
373 6rxn_A Rubredoxin; electron tr 30.4 14 0.00049 28.2 0.7 14 39-52 30-43 (46)
374 1f5n_A Interferon-induced guan 30.4 6.2E+02 0.021 28.3 17.5 18 288-305 434-451 (592)
375 1x5w_A Zinc finger protein 64, 30.3 24 0.00083 26.6 2.1 26 36-64 34-59 (70)
376 1wg1_A KIAA1579 protein, homol 30.1 34 0.0012 27.5 3.0 52 123-190 7-58 (88)
377 2cq1_A PTB-like protein L; RRM 29.7 46 0.0016 28.3 3.9 45 122-181 16-61 (101)
378 1e8j_A Rubredoxin; iron-sulfur 29.2 18 0.00063 28.1 1.2 15 38-52 35-49 (52)
379 2kmk_A Zinc finger protein GFI 29.2 26 0.00089 26.7 2.1 22 37-61 55-76 (82)
380 2d9h_A Zinc finger protein 692 28.9 27 0.00092 26.9 2.1 24 36-62 4-27 (78)
381 1ic2_A Tropomyosin alpha chain 28.6 2E+02 0.0069 23.7 7.6 12 394-405 5-16 (81)
382 2lv2_A Insulinoma-associated p 28.5 26 0.00088 29.1 2.0 27 35-64 52-78 (85)
383 4gzn_C ZFP-57, zinc finger pro 28.1 25 0.00084 27.3 1.7 27 35-64 28-54 (60)
384 1a1h_A QGSR zinc finger peptid 28.1 28 0.00094 27.2 2.1 25 36-63 59-83 (90)
385 3nmd_A CGMP dependent protein 27.9 1.4E+02 0.0046 25.0 6.2 45 438-482 21-65 (72)
386 1wrd_A TOM1, target of MYB pro 27.6 1.3E+02 0.0043 26.2 6.4 21 407-427 8-28 (103)
387 2cot_A Zinc finger protein 435 27.5 28 0.00096 26.8 2.0 25 36-63 43-67 (77)
388 2v3b_B Rubredoxin 2, rubredoxi 27.3 17 0.00059 28.6 0.7 17 38-54 35-51 (55)
389 1va1_A Transcription factor SP 27.2 34 0.0011 22.5 2.1 25 36-63 5-31 (37)
390 2d9o_A DNAJ (HSP40) homolog, s 27.1 51 0.0017 28.2 3.7 38 141-182 28-65 (100)
391 1yk4_A Rubredoxin, RD; electro 27.1 18 0.00061 28.2 0.7 16 38-53 34-49 (52)
392 2lcw_A RNA-binding protein FUS 33.1 13 0.00045 31.5 0.0 56 123-190 9-75 (116)
393 2yt9_A Zinc finger-containing 27.0 29 0.00099 27.5 2.0 26 36-64 4-29 (95)
394 2csh_A Zinc finger protein 297 26.9 88 0.003 25.4 5.1 25 36-63 34-58 (110)
395 1sp2_A SP1F2; zinc finger, tra 26.8 34 0.0011 21.3 2.0 23 39-64 2-26 (31)
396 2wbs_A Krueppel-like factor 4; 26.7 31 0.0011 26.8 2.2 24 36-62 62-85 (89)
397 2ct1_A Transcriptional repress 26.5 30 0.001 26.6 2.0 24 38-64 44-67 (77)
398 3ue2_A Poly(U)-binding-splicin 26.4 30 0.001 30.4 2.2 86 123-228 22-114 (118)
399 4rxn_A Rubredoxin; electron tr 26.3 19 0.00064 28.4 0.7 16 38-53 35-50 (54)
400 3haj_A Human pacsin2 F-BAR; pa 26.1 6.3E+02 0.021 27.0 19.0 185 282-487 36-236 (486)
401 2kn9_A Rubredoxin; metalloprot 26.0 19 0.00064 30.7 0.7 17 38-54 59-75 (81)
402 2d9h_A Zinc finger protein 692 26.0 32 0.0011 26.5 2.0 25 37-64 36-60 (78)
403 1bhi_A CRE-BP1, ATF-2; CRE bin 25.6 37 0.0013 22.2 2.1 25 36-63 3-29 (38)
404 1qm9_A Polypyrimidine tract-bi 25.5 65 0.0022 29.2 4.4 53 123-190 5-59 (198)
405 1uix_A RHO-associated kinase; 25.4 2.5E+02 0.0085 23.4 7.3 43 383-427 6-54 (71)
406 2j8a_A Histone-lysine N-methyl 25.4 1.3E+02 0.0044 27.9 6.3 37 142-180 18-57 (136)
407 3mjh_B Early endosome antigen 25.3 33 0.0011 24.7 1.8 20 39-61 5-24 (34)
408 3mq9_A Bone marrow stromal ant 25.1 6.1E+02 0.021 26.5 16.0 17 183-199 200-216 (471)
409 2a3j_A U1 small nuclear ribonu 25.0 77 0.0026 28.0 4.7 48 123-182 31-83 (127)
410 2dmd_A Zinc finger protein 64, 24.7 35 0.0012 27.0 2.2 25 36-63 61-85 (96)
411 2wvr_A Geminin; DNA replicatio 24.7 1.5E+02 0.005 29.3 6.8 36 389-427 116-151 (209)
412 3pgw_A U1-A; protein-RNA compl 24.5 83 0.0028 30.3 5.2 55 123-189 11-69 (282)
413 3r27_A HnRNP L, heterogeneous 24.5 85 0.0029 27.0 4.7 52 123-190 23-75 (100)
414 2kfq_A FP1; protein, de novo p 24.4 12 0.00042 24.0 -0.5 22 39-63 2-23 (32)
415 2lv2_A Insulinoma-associated p 24.3 30 0.001 28.7 1.7 31 31-64 20-50 (85)
416 2ebt_A Krueppel-like factor 5; 24.3 37 0.0013 27.0 2.2 22 37-61 73-94 (100)
417 1x6h_A Transcriptional repress 24.2 37 0.0013 26.2 2.1 27 34-63 10-36 (86)
418 1sjr_A Polypyrimidine tract-bi 23.8 65 0.0022 30.4 4.1 49 124-184 49-97 (164)
419 2eod_A TNF receptor-associated 23.6 39 0.0013 25.3 2.1 25 36-64 7-31 (66)
420 1llm_C Chimera of ZIF23-GCN4; 23.3 38 0.0013 26.7 2.1 26 36-64 28-53 (88)
421 1dx8_A Rubredoxin; electron tr 23.3 23 0.00077 29.3 0.7 18 38-55 39-56 (70)
422 2cot_A Zinc finger protein 435 23.3 39 0.0013 26.0 2.1 27 35-64 14-40 (77)
423 4dci_A Uncharacterized protein 23.2 1.4E+02 0.0046 28.1 6.1 92 324-427 28-123 (150)
424 2hl7_A Cytochrome C-type bioge 23.1 23 0.0008 30.2 0.8 13 38-50 25-37 (84)
425 2adc_A Polypyrimidine tract-bi 23.1 72 0.0025 30.1 4.4 53 123-190 36-90 (229)
426 2kw0_A CCMH protein; oxidoredu 22.9 22 0.00075 30.9 0.6 13 38-50 22-34 (90)
427 2l9w_A U4/U6 snRNA-associated- 22.8 72 0.0025 28.9 3.9 60 123-194 23-85 (117)
428 2p22_C Protein SRN2; endosome, 22.6 5.2E+02 0.018 24.9 11.3 71 270-346 78-149 (192)
429 1s1c_X RHO-associated, coiled- 22.6 3E+02 0.01 22.8 7.3 44 382-427 7-54 (71)
430 1s24_A Rubredoxin 2; electron 22.6 18 0.0006 31.3 -0.1 17 38-54 67-83 (87)
431 1ncs_A Peptide M30F, transcrip 22.5 40 0.0014 23.7 1.8 29 32-63 11-41 (47)
432 1wjp_A Zinc finger protein 295 22.5 42 0.0014 27.4 2.3 30 31-63 8-37 (107)
433 3smz_A Protein raver-1, ribonu 22.3 62 0.0021 31.3 3.8 39 576-614 237-275 (284)
434 2yt9_A Zinc finger-containing 22.1 45 0.0015 26.3 2.3 23 38-63 64-86 (95)
435 3pq1_A Poly(A) RNA polymerase; 21.8 58 0.002 35.6 3.8 37 143-183 65-101 (464)
436 2i1j_A Moesin; FERM, coiled-co 21.6 2.6E+02 0.0088 31.1 9.0 22 325-346 328-349 (575)
437 1llm_C Chimera of ZIF23-GCN4; 21.2 43 0.0015 26.4 2.0 23 38-63 2-24 (88)
438 2epp_A POZ-, at HOOK-, and zin 20.9 48 0.0016 26.4 2.2 26 36-64 10-35 (66)
439 2yrc_A Protein transport prote 20.8 38 0.0013 27.0 1.5 17 32-48 26-42 (59)
440 1deq_A Fibrinogen (alpha chain 20.8 8E+02 0.027 26.3 13.5 32 260-291 63-94 (390)
441 2dlq_A GLI-kruppel family memb 20.8 44 0.0015 27.5 2.0 25 36-63 91-115 (124)
442 2dlq_A GLI-kruppel family memb 20.6 46 0.0016 27.4 2.2 25 36-63 4-28 (124)
443 2ab3_A ZNF29; zinc finger prot 20.4 41 0.0014 20.1 1.4 22 39-63 2-25 (29)
444 1cii_A Colicin IA; bacteriocin 20.4 9.1E+02 0.031 26.8 13.3 109 321-447 349-458 (602)
445 2ee8_A Protein ODD-skipped-rel 20.2 51 0.0017 26.6 2.3 25 36-63 14-38 (106)
446 2gcx_A FEOA, ferrous iron tran 20.2 1.7E+02 0.0058 23.1 5.4 36 144-180 19-55 (75)
447 1ses_A Seryl-tRNA synthetase; 20.1 3.1E+02 0.011 29.3 8.9 52 432-501 67-126 (421)
448 2gqj_A Zinc finger protein KIA 20.1 48 0.0016 27.1 2.1 26 35-63 20-46 (98)
No 1
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1.6e-64 Score=484.35 Aligned_cols=171 Identities=52% Similarity=0.902 Sum_probs=162.6
Q ss_pred CCCCCceeeccceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 111 DHQPDQLLVYPWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 111 ~~~~dd~iVWPwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.++++++|||||||||+|||+++++||+++|+|+++|+++|+.+||+|++|+|+||++||+|+|||+|++||+||+||++
T Consensus 2 ~~~~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 2 DCDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp ----CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCCCCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 36889999999999999999966899999999999999999777799999999999999999999999999999999999
Q ss_pred HHhhhhhcCCChhhhhhhcCCCccceeeeeecCCCCCCChhhhhhhhCCCCcChhhHHHhhhhhhhhHHHHHHHHHHHHh
Q 038527 191 FEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKSLIGDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKD 270 (630)
Q Consensus 191 lek~Fe~~~~GKkdW~~~~~~~~~LYGWvAradDy~s~g~ig~~Lrk~gdLKTv~ei~~E~~rk~~~lv~~L~n~I~~kn 270 (630)
||+||+.+||||+||.++++++++||||||++|||+|.||||+||||+||||||+||++|++|++++||++|+++|++||
T Consensus 82 fek~Fe~~~~GK~dW~~~~~~~~~lyGW~Ar~dDy~s~~~iG~~Lrk~gdLKTv~~i~~E~~rk~~~lv~~L~~~ie~kn 161 (172)
T 4e8u_A 82 FDKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNIIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKK 161 (172)
T ss_dssp HHHHHHHTTCSHHHHTCSSSCCCSCEEEECBHHHHHSSSHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHhhCCCCCCceEEEecccccccCCChHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhh
Q 038527 271 MRYKEMEMKYL 281 (630)
Q Consensus 271 ~~l~elE~k~~ 281 (630)
+||++||++||
T Consensus 162 ~~l~ele~k~~ 172 (172)
T 4e8u_A 162 KDMKEIEELCS 172 (172)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhhC
Confidence 99999999997
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=94.76 E-value=0.094 Score=63.12 Aligned_cols=9 Identities=11% Similarity=0.065 Sum_probs=6.3
Q ss_pred HHHHHhhhh
Q 038527 18 YEYKKYNQL 26 (630)
Q Consensus 18 y~~k~Y~~L 26 (630)
|-.+.|..+
T Consensus 554 ~~~kl~~~~ 562 (1184)
T 1i84_S 554 FVEKLIQEQ 562 (1184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 667777766
No 3
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.27 E-value=4.4 Score=39.60 Aligned_cols=154 Identities=14% Similarity=0.082 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 258 LVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQL 337 (630)
Q Consensus 258 lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL 337 (630)
-|+|.+.........+.+|+.-|++-..|=+.+-.|-+.-+.+...-.+.++. ...+.-.+.+.++..++....+.
T Consensus 11 e~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~----~~~~L~~E~e~~k~K~~~~~~e~ 86 (189)
T 2v71_A 11 ETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA----DNQRLKYEVEALKEKLEHQYAQS 86 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888887666554444443333333332322221 22222233333333333332221
Q ss_pred HHHHHHHHHHHhhcHHHHHhhHHHHHHh--HhhhHHHhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHhhh
Q 038527 338 EEHEKQLQYREAKNETERKKLHSEKIMN--ERATLEQKKAD-----EKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQAL 410 (630)
Q Consensus 338 ~~r~k~L~~~~a~~~~er~kl~~E~~kn--~lA~~EQ~kad-----e~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ~L 410 (630)
..- +..++.. -..|...+... .+-.+||.--| -.+..-+++-..--..++-++.-||-+|+.|+.|
T Consensus 87 ~~~---~~~Lq~e----l~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l 159 (189)
T 2v71_A 87 YKQ---VSVLEDD----LSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESL 159 (189)
T ss_dssp HHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111111 11111111111 22233332211 1122233333334455677788889999999999
Q ss_pred HHhHHHhhhhhH
Q 038527 411 ELEIEQKRGTIQ 422 (630)
Q Consensus 411 ELEi~qlkg~L~ 422 (630)
..++|+|+.-+.
T Consensus 160 ~~~~QRLkdE~r 171 (189)
T 2v71_A 160 LVSVQRLKDEAR 171 (189)
T ss_dssp HCCC--------
T ss_pred HHHHHHHHHHHH
Confidence 999988876554
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.69 E-value=1.4 Score=52.82 Aligned_cols=15 Identities=33% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH
Q 038527 327 TSQLEAQKMQLEEHE 341 (630)
Q Consensus 327 ~~eLe~k~~eL~~r~ 341 (630)
..+||++..+|..|-
T Consensus 923 ~~~LE~kl~eLq~rL 937 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKI 937 (1080)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555443
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.15 E-value=0.39 Score=57.85 Aligned_cols=19 Identities=11% Similarity=-0.015 Sum_probs=9.7
Q ss_pred eeEEEEeCCChhhhHHHHH
Q 038527 172 GFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 172 g~aVV~F~~dw~Gf~nA~~ 190 (630)
|.+-|-|....-...+.+|
T Consensus 769 G~TKVF~r~g~l~~LE~~r 787 (1184)
T 1i84_S 769 GQSKIFFRTGVLAHLEEER 787 (1184)
T ss_dssp CSSEEEECTTHHHHHHHHH
T ss_pred cCeEEEEechHHHHHHHHH
Confidence 4445556655555555443
No 6
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.71 E-value=5.2 Score=36.27 Aligned_cols=41 Identities=24% Similarity=0.446 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 038527 440 AIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKEL 480 (630)
Q Consensus 440 ~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~l 480 (630)
+|...|.+-.+.++..++.|..|...-|+.-+++++-++.|
T Consensus 80 eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 80 QLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777788888888888888888888777765
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.69 E-value=2.4 Score=46.20 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHhchh
Q 038527 384 QVHKEEKEKLRRKIIELQKGLD 405 (630)
Q Consensus 384 e~hkrEKe~~~~kil~LEkqLd 405 (630)
.+-++|...+-.+|.+|++.++
T Consensus 561 ~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 561 AELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4445566666677777776664
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=89.69 E-value=4.7 Score=48.42 Aligned_cols=18 Identities=22% Similarity=0.484 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhchh
Q 038527 388 EEKEKLRRKIIELQKGLD 405 (630)
Q Consensus 388 rEKe~~~~kil~LEkqLd 405 (630)
.|++.+.+++..|+++++
T Consensus 977 ~e~~~~~~~v~~L~~e~~ 994 (1080)
T 2dfs_A 977 EEAKNATNRVLSLQEEIA 994 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555555443
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.55 E-value=48 Score=44.42 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 283 TSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIY---LEHEKATSQLEAQKMQLEEHEKQLQY 346 (630)
Q Consensus 283 ~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~---~e~ekl~~eLe~k~~eL~~r~k~L~~ 346 (630)
|-.|.-..+.--..|...-.+|+...+.+-..=..++. .....|+.+|..+..+|+.+.++-++
T Consensus 1893 TP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~ 1959 (3245)
T 3vkg_A 1893 TPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQ 1959 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444433332222222 33356667777776666666666554
No 10
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.26 E-value=0.49 Score=40.40 Aligned_cols=59 Identities=20% Similarity=0.212 Sum_probs=45.6
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCC-CceeEEEEeCCChhhhHHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~l 191 (630)
+..+.|-|+|.. .+..+|++.|+. |.+..|+.++++.| ++|++.|+|.+.- .-..|+.+
T Consensus 15 ~~~l~V~nLp~~---------~te~~l~~~F~~--~G~~~v~i~~d~~g~~~G~afV~F~~~~-~a~~Al~~ 74 (102)
T 1wez_A 15 GHCVHMRGLPYR---------ATENDIYNFFSP--LNPMRVHIEIGPDGRVTGEADVEFATHE-DAVAAMAK 74 (102)
T ss_dssp SCEEEEESCCTT---------CCHHHHHHSSCS--CCCSEEEEEESSSSCEEEEEEEECSSSH-HHHHHHTT
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHH--cCceEEEEEECCCCCEeeEEEEEECCHH-HHHHHHHh
Confidence 457888999875 367889999999 77889999988766 5799999998644 44555544
No 11
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.15 E-value=1.1e+02 Score=41.21 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 299 KSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQY 346 (630)
Q Consensus 299 ~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~ 346 (630)
..|+-.+.|+.. |...+...=.+-..++.+|+.+..+-+.--.++.+
T Consensus 1920 ~rl~~GL~KL~e-t~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~ 1966 (3245)
T 3vkg_A 1920 LHLNIGLKKLRD-TEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQ 1966 (3245)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433 23344444555556666666666666655555544
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.98 E-value=29 Score=34.47 Aligned_cols=14 Identities=7% Similarity=0.302 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhh
Q 038527 471 DELQEARKELINSL 484 (630)
Q Consensus 471 dElq~ark~li~~l 484 (630)
++|...|.+|..++
T Consensus 160 ~~l~~~r~~l~~~i 173 (256)
T 3na7_A 160 QIIFKKKEDLVEKT 173 (256)
T ss_dssp HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcC
Confidence 34555555555543
No 13
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.70 E-value=5.4 Score=44.30 Aligned_cols=88 Identities=13% Similarity=0.066 Sum_probs=57.5
Q ss_pred hHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 246 GKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTME---QMDEMNKSRNEEIRKMQQSAHDHFQKIYLE 322 (630)
Q Consensus 246 ei~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~me---Ek~~l~~~yneE~~kmQ~~a~~~~~~i~~e 322 (630)
.+..+..+.-.+.|+.|+++++.-++.-++.+.-|+.+...|+.-+. +++....+|.+|++..++.-.+-++..+..
T Consensus 53 glLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsn 132 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQH 132 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888888888888888888888877777777755543 345556666667776655555555544444
Q ss_pred HHHHHHHHHHH
Q 038527 323 HEKATSQLEAQ 333 (630)
Q Consensus 323 ~ekl~~eLe~k 333 (630)
...|+.-|+.+
T Consensus 133 IrvLQsnLedq 143 (562)
T 3ghg_A 133 IQLLQKNVRAQ 143 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 14
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=85.34 E-value=0.97 Score=38.45 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=44.4
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCC----cccccccCCCC-CceeEEEEeCCChhhhHHHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNP----LKVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIMFE 192 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p----~kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~le 192 (630)
+.++.|-|+|.. .+...|++.|+. |.+ ..|+.++++.| ++|++.|.|.+ ...-..|+.++
T Consensus 11 ~~~l~V~nLp~~---------~te~~l~~~F~~--~g~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~~ 75 (107)
T 2lmi_A 11 VFLIRAQGLPWS---------CTMEDVLNFFSD--CRIRNGENGIHFLLNRDGKRRGDALIEMES-EQDVQKALEKH 75 (107)
T ss_dssp CCEEEEECCCSS---------CCSHHHHHHTTT--SCBTTTTTTEECCCCTTSTTCSEEEEEBSS-HHHHHHHHTTT
T ss_pred ccEEEEeCCCCC---------CCHHHHHHHHHh--cCCcCCcceEEEEECCCCCEeeEEEEEECC-HHHHHHHHHhC
Confidence 345778898875 256889999998 665 57777777665 68999999975 55566676653
No 15
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.97 E-value=1.4 Score=36.79 Aligned_cols=49 Identities=29% Similarity=0.429 Sum_probs=39.3
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCC
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKD 181 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~d 181 (630)
-.+.|-|+|.. .+...|.+.|+. |.++ .++...+..++.|++.|.|.+.
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~g~afV~f~~~ 65 (103)
T 2cq3_A 16 KRLHVSNIPFR---------FRDPDLRQMFGQ--FGKILDVEIIFNERGSKGFGFVTFENS 65 (103)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHGGG--TSCEEEEEEECCTTTTCCEEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEecCCCCcEEEEEEECCH
Confidence 45678898864 367889999999 8775 6777777778999999999874
No 16
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.11 E-value=1 Score=39.32 Aligned_cols=60 Identities=20% Similarity=0.215 Sum_probs=46.3
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCC-CceeEEEEeCCChhhhHHHHHHHh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIMFEK 193 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~lek 193 (630)
..+.|-|+|.. .+...|++.|+. |.+..|+.++++.| .+|++.|.|... ..-..|+.++.
T Consensus 17 ~~v~V~nLp~~---------~te~dl~~~F~~--~~v~~v~i~~d~~g~~~G~afV~F~~~-~~a~~Al~~~~ 77 (109)
T 2dnn_A 17 LYVSVHGMPFS---------AMENDVRDFFHG--LRVDAVHLLKDHVGRNNGNGLVKFLSP-QDTFEALKRNR 77 (109)
T ss_dssp HEEEEECCCSS---------CCHHHHHHHTTT--SCCCEEEECCCTTCCCCSEEEEECSSH-HHHHHHHHTTT
T ss_pred CEEEEeCCCCC---------CCHHHHHHHhcc--CCeeEEEEEECCCCCCCeEEEEEECCH-HHHHHHHhcCC
Confidence 57889999875 367889999999 87788999888776 589999999874 34455655443
No 17
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.60 E-value=1.6 Score=35.58 Aligned_cols=58 Identities=12% Similarity=0.235 Sum_probs=43.6
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCC-CceeEEEEeCCChhhhHHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~l 191 (630)
.++.|-|+|.. .+...|++.|+. |.+..++..++..| ++|+|.|.|.+ -..-..|+.+
T Consensus 11 ~~l~v~nLp~~---------~t~~~l~~~F~~--~~i~~v~i~~~~~g~~~g~afV~f~~-~~~a~~A~~~ 69 (91)
T 2dgw_A 11 HTVKLRGAPFN---------VTEKNVMEFLAP--LKPVAIRIVRNAHGNKTGYIFVDFSN-EEEVKQALKC 69 (91)
T ss_dssp CEEEEECCCSS---------CCHHHHHHHHTT--SCCSEEEEEECTTSCEEEEEEEECSS-HHHHHHHHHS
T ss_pred cEEEEECCCCC---------CCHHHHHHHHhh--CCceEEEEEECCCCCCceEEEEEECC-HHHHHHHHHh
Confidence 56778898875 367889999999 87778888887555 58999999974 4455566653
No 18
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=82.84 E-value=1.8 Score=35.93 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=40.8
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCC--CCCceeEEEEeCCChhhhHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSR--RGHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
+++|-|+|.. .+...|++.|+.-|..+..|+...++ ..++|+|.|.|.+--. -..|+
T Consensus 3 ~i~v~nLp~~---------~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~-A~~Ai 61 (91)
T 2lxi_A 3 IVMLRMLPQA---------ATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQD-ATRWM 61 (91)
T ss_dssp EEEEETCCSS---------CCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHH-HHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHH-HHHHH
Confidence 5778898875 36789999999944345678877765 3577999999976543 33444
No 19
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.20 E-value=1.6 Score=37.50 Aligned_cols=58 Identities=17% Similarity=0.139 Sum_probs=42.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcc--cccccCCCC-CceeEEEEeCCChhhhHHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLK--VHPLWSRRG-HSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~k--v~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~l 191 (630)
-++.|-|+|.. .+...|.+.|+. |.++. |+.++++.| ++|++.|.|.+ -..-..|+.+
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~--~g~v~~~v~i~~d~~g~~~G~afV~F~~-~~~a~~Al~~ 76 (114)
T 2cpy_A 16 VCAHITNIPFS---------ITKMDVLQFLEG--IPVDENAVHVLVDNNGQGLGQALVQFKN-EDDARKSERL 76 (114)
T ss_dssp CEEEEESCCTT---------SCHHHHHHHTTT--SCCCSTTEEECCCTTSSCSSCEEEECSS-HHHHHHHGGG
T ss_pred cEEEEeCcCCc---------CCHHHHHHHHHh--CCCcCCeEEEEECCCCCcceEEEEEECC-HHHHHHHHHh
Confidence 34678898875 356889999999 76654 888887766 68999999975 4444555443
No 20
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.16 E-value=1.7 Score=38.89 Aligned_cols=58 Identities=16% Similarity=0.096 Sum_probs=43.5
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-----ccccccCCCC-CceeEEEEeCCChhhhHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-----KVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-----kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~ 190 (630)
+..+.|-|+|.. .+..+|++.|+. |.++ .|+.+++..| ++|++.|.|.+.- .-..|+.
T Consensus 23 ~~~v~V~nLp~~---------~te~dl~~~F~~--~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~-~A~~Al~ 86 (123)
T 2dha_A 23 QVIVRMRGLPFT---------ATAEEVVAFFGQ--HCPITGGKEGILFVTYPDGRPTGDAFVLFACEE-YAQNALR 86 (123)
T ss_dssp CCEEEECSCCTT---------CCHHHHHHHHHT--TSCCTTGGGGEEEEECTTSCEEEEEEECCSSHH-HHHHHHT
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHh--hCCccCCcceEEEEECCCCCEeeEEEEEECCHH-HHHHHHH
Confidence 456888899875 367899999999 8864 6777777666 5799999998754 3444554
No 21
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=80.99 E-value=1.7 Score=39.18 Aligned_cols=58 Identities=12% Similarity=0.037 Sum_probs=44.1
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc--ccccccCCCC-CceeEEEEeCCChhhhHHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL--KVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~--kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~l 191 (630)
.++.|-|+|.. .+...|++.|+. |.+. .|+.++++.| .+|++.|.|.+.-. -..|+..
T Consensus 43 ~~lfVgnLp~~---------~te~dL~~~F~~--~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~-A~~Al~~ 103 (126)
T 2hgm_A 43 GFVRLRGLPFG---------CTKEEIVQFFSG--LEIVPNGITLPVDPEGKITGEAFVQFASQEL-AEKALGK 103 (126)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHTTT--SCEEEEEEECCCCSSSSSCSEEEEEESSTTH-HHHHHTT
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHhc--CCceeeEEEEEECCCCCCceEEEEEECCHHH-HHHHHHH
Confidence 45778999875 367889999999 8777 7888888776 58999999987653 3445543
No 22
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.81 E-value=2.1 Score=35.67 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=42.3
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
-.+.|-|+|.. .+...|.+.|+. |.++ .++......++.|++.|.|.+.- .-..|+.
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~g~afV~f~~~~-~a~~A~~ 73 (103)
T 2cqi_A 16 RTLYVGNLSRD---------VTEVLILQLFSQ--IGPCKSCKMITEHTSNDPYCFVEFYEHR-DAAAALA 73 (103)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHHH--HSCEEEEEEECCCCSSCCEEEEEESSHH-HHHHHHH
T ss_pred CEEEEeCCCcc---------CCHHHHHHHHHh--cCCEeEEEEEecCCCCCCEEEEEECCHH-HHHHHHH
Confidence 45778898865 367889999999 8775 56777777778999999998543 3344444
No 23
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.47 E-value=3.1 Score=35.50 Aligned_cols=52 Identities=27% Similarity=0.383 Sum_probs=40.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAG 184 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~G 184 (630)
-.+.|-|++.. .+...|++.|+. |.++ .++...+..++.|++.|.|.+.-..
T Consensus 30 ~~l~V~nLp~~---------~te~~l~~~F~~--~G~i~~v~i~~~~~~~kg~afV~f~~~~~A 82 (109)
T 2err_A 30 KRLHVSNIPFR---------FRDPDLRQMFGQ--FGKILDVEIIFNERGSKGFGFVTFENSADA 82 (109)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHGGG--TCCCSCEEECCBTTBCTTEEEEECCCSHHH
T ss_pred CEEEEECCCCc---------CCHHHHHHHHHh--cCCEEEEEEEECCCCCceEEEEEECCHHHH
Confidence 34667888764 367889999999 8765 6667777778899999999886544
No 24
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=80.36 E-value=33 Score=30.93 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=46.8
Q ss_pred HHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 265 TLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQL 344 (630)
Q Consensus 265 ~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L 344 (630)
.|......+...+....+.......++.++..|...-..|-. ......-++..-.+.+.+|+.++.++..|-.+.
T Consensus 21 el~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~-----~l~e~EE~~~~L~~~k~eLe~~l~el~~rleee 95 (129)
T 2fxo_A 21 EFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQD-----NLADAEERCDQLIKNKIQLEAKVKEMNKRLEDE 95 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444445554444332222211 112234444555566677777777777777776
Q ss_pred HHHHhhcHHHHHhhHHHHH
Q 038527 345 QYREAKNETERKKLHSEKI 363 (630)
Q Consensus 345 ~~~~a~~~~er~kl~~E~~ 363 (630)
+..-+.-...+++++.+..
T Consensus 96 ee~~~~L~~~kkkle~e~~ 114 (129)
T 2fxo_A 96 EEMNAELTAKKRKLEDECS 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6665555566666654443
No 25
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=78.84 E-value=1.1 Score=41.03 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=43.1
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCC-CceeEEEEeCCChhhhHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRG-HSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~ 189 (630)
.++.|-|+|.. .+..+|++.|+. |.+..|++++++.| ++|++.|+|.+. ..-..|+
T Consensus 47 ~~lfV~nLp~~---------~te~dL~~~F~~--~Gi~~v~i~~d~~g~srGfaFV~F~~~-e~A~~Al 103 (139)
T 2hgn_A 47 HCVHMRGLPYK---------ATENDIYNFFSP--LNPVRVHIEIGPDGRVTGEADVEFATH-EEAVAAM 103 (139)
T ss_dssp CCEECCSCCTT---------CCHHHHHHHHCS--CCCSEEECCCSSSSCSSCCCEEECSHH-HHHHHHT
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEECCCCCCceEEEEEeCCH-HHHHHHH
Confidence 46778898875 367899999999 77889999988776 589999999753 3334444
No 26
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=78.43 E-value=2.5 Score=36.76 Aligned_cols=58 Identities=22% Similarity=0.196 Sum_probs=43.8
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCC----cccccccCCCC-CceeEEEEeCCChhhhHHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNP----LKVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p----~kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~l 191 (630)
.++.|-|+|.. .+..+|++.|+. |.+ ..|+.++++.| ++|++.|.|.+ -..-..|+.+
T Consensus 18 ~~l~V~nLp~~---------~te~~l~~~F~~--~G~~~~v~~v~i~~~~~g~~~G~afV~F~~-~~~a~~Al~~ 80 (118)
T 2db1_A 18 YVVKLRGLPWS---------CSIEDVQNFLSD--CTIHDGVAGVHFIYTREGRQSGEAFVELES-EDDVKLALKK 80 (118)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHTTT--SCBTTGGGGEEEEECSSSCEEEEEEEEBSS-HHHHHHHGGG
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHH--cCCccCceeEEEEECCCCCCCeEEEEEECC-HHHHHHHHhc
Confidence 46778899875 367889999999 766 57777877766 58999999975 4555566654
No 27
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.41 E-value=2.5 Score=34.94 Aligned_cols=49 Identities=18% Similarity=0.256 Sum_probs=37.9
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWA 183 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~ 183 (630)
..+.|-|+|.. .+...|++.|+. |.++.+...++ .+.|++.|.|.+.-.
T Consensus 20 ~~l~V~nL~~~---------~t~~~l~~~F~~--~G~v~~~~~~~--~~~g~afV~f~~~~~ 68 (97)
T 2e5j_A 20 ADVYVGNLPRD---------ARVSDLKRALRE--LGSVPLRLTWQ--GPRRRAFLHYPDSAA 68 (97)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHHH--TTCCCSEEEEE--TTTTEEEEECSSHHH
T ss_pred CEEEEeCCCCc---------CcHHHHHHHHHh--cCCEEEEEEcC--CCCcEEEEEECCHHH
Confidence 46778898864 367889999999 88877666654 577999999987543
No 28
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=78.27 E-value=2.5 Score=35.62 Aligned_cols=80 Identities=10% Similarity=0.014 Sum_probs=51.4
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcc--cccccCCCC-CceeEEEEeCCChhhhHHHHHHHhhhhhc
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLK--VHPLWSRRG-HSGFAVVEFYKDWAGFKNAIMFEKSFEVD 198 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~k--v~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~lek~Fe~~ 198 (630)
..+.|-|+|.. .+...|++.|+. |.++. ++..++..| ++|++.|+|.+. ..-..|+.. +
T Consensus 16 ~~l~V~nLp~~---------~te~~l~~~F~~--~G~v~~~v~i~~~~~g~~~G~afV~F~~~-~~a~~A~~~-~----- 77 (104)
T 1wg5_A 16 GFVRLRGLPFG---------CSKEEIVQFFSG--LEIVPNGMTLPVDFQGRSTGEAFVQFASQ-EIAEKALKK-H----- 77 (104)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHTTT--CCEEEEEEECCBCSSSCBCSEEEEEESSH-HHHHHHHTT-T-----
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCcceeEEEEECCCCCcceEEEEEECCH-HHHHHHHHh-C-----
Confidence 46778899875 367889999999 87764 666676555 579999999763 334444433 1
Q ss_pred CCChhhhhhhcCCCccceeeeeecCCCCC
Q 038527 199 HHGKKDFYAVKNLGDKLYGWIARDDDYNS 227 (630)
Q Consensus 199 ~~GKkdW~~~~~~~~~LYGWvAradDy~s 227 (630)
|. .-+++.|.=..|...++..
T Consensus 78 --~~------~~~gr~i~v~~~~~~~~~~ 98 (104)
T 1wg5_A 78 --KE------RIGHRYIEIFKSSRAEVRT 98 (104)
T ss_dssp --TC------CSSSSCCEEEEECTTTSCC
T ss_pred --cc------hhCCcEEEEEECCHHHHHH
Confidence 10 1223455556666666653
No 29
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.36 E-value=3 Score=35.11 Aligned_cols=56 Identities=25% Similarity=0.338 Sum_probs=39.8
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
..+.|-|+|.. .+..+|++.|+. |.++....+.....+.|++.|.|.+.- .-..|+
T Consensus 23 ~~l~V~nLp~~---------~t~~~l~~~F~~--~G~v~~~~i~~~~~~~g~afV~f~~~~-~A~~A~ 78 (109)
T 1x4a_A 23 CRIYVGNLPPD---------IRTKDIEDVFYK--YGAIRDIDLKNRRGGPPFAFVEFEDPR-DAEDAV 78 (109)
T ss_dssp SEEEEESCCTT---------CCHHHHHHHHGG--GSCEEEEEECCSSSSSCCEEEEESCHH-HHHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEECCCCCcEEEEEECCHH-HHHHHH
Confidence 46778898864 367889999999 888654444444557899999997643 334454
No 30
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.11 E-value=2.4 Score=35.42 Aligned_cols=60 Identities=18% Similarity=0.312 Sum_probs=43.2
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCC---CCceeEEEEeCCChhhhHHHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRR---GHSGFAVVEFYKDWAGFKNAIMFE 192 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~---Gh~g~aVV~F~~dw~Gf~nA~~le 192 (630)
|..+.|-|+|.. .+...|++.|+. |.+..|+...++. -+.|++.|.|.+. ..-..|+.|+
T Consensus 15 ~~~l~V~nlp~~---------~t~~~l~~~F~~--~Gi~~v~i~~~~~~~g~~~g~afV~f~~~-~~a~~A~~l~ 77 (104)
T 1wi8_A 15 PYTAFLGNLPYD---------VTEESIKEFFRG--LNISAVRLPREPSNPERLKGFGYAEFEDL-DSLLSALSLN 77 (104)
T ss_dssp CEEEEEESCCSS---------CCHHHHHHHTTT--SCEEEEECCBCSSCTTSBCSCEEEEESSH-HHHHHHHGGG
T ss_pred CCEEEEeCCCCc---------CCHHHHHHHHHH--CCceEEEEecCCCCCCCcCeEEEEEECCH-HHHHHHHhcC
Confidence 367888999875 367889999999 6567777777653 3689999999754 3445555443
No 31
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=77.00 E-value=3.5 Score=34.05 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=36.7
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCCh
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDW 182 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw 182 (630)
|+++.|-|+|.. .+...|++.|+. |.++ .++... .+.|++.|.|.+.-
T Consensus 11 ~~~l~V~~Lp~~---------~te~~L~~~F~~--~G~i~~v~i~~---~srGfaFV~F~~~~ 59 (89)
T 3d2w_A 11 GSKVFVGRCTED---------MTAEELQQFFCQ--YGEVVDVFIPK---PFRAFAFVTFADDK 59 (89)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHTT--TSCEEEEECCS---SCCSEEEEEESCHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHhc--cCCEEEEEEee---CCCCEEEEEECCHH
Confidence 577888898875 367889999999 8774 444444 37899999998754
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.67 E-value=23 Score=39.39 Aligned_cols=79 Identities=13% Similarity=0.171 Sum_probs=51.8
Q ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 254 KTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQ 333 (630)
Q Consensus 254 k~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k 333 (630)
...+.+..+.+++........+++..|++.+.-|++..+..+.-++.--.-|+.+|. .++.+.-+.++|...++.|
T Consensus 82 dseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQs----nLedq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 82 DSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQK----NVRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 456666666777766667777888888888888888877643333333355555544 4444555667888888887
Q ss_pred HHH
Q 038527 334 KMQ 336 (630)
Q Consensus 334 ~~e 336 (630)
++.
T Consensus 158 irs 160 (562)
T 3ghg_A 158 IRS 160 (562)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 33
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=75.42 E-value=5.9 Score=32.18 Aligned_cols=57 Identities=26% Similarity=0.253 Sum_probs=41.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC-CceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~ 190 (630)
..+.|-|+|.. .+...|.+.|+. |.++ .++...++.| ++|++.|.|.+.-.. ..|+.
T Consensus 17 ~~l~v~nlp~~---------~~~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a-~~A~~ 75 (95)
T 2ywk_A 17 RTVFVGNLEAR---------VREEILYELFLQ--AGPLTKVTICKDREGKPKSFGFVCFKHPESV-SYAIA 75 (95)
T ss_dssp GEEEEECCCTT---------CCHHHHHHHHGG--GSCEEEEEEEECTTSCEEEEEEEEESSTHHH-HHHHH
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHh--cCCEEEEEEEECCCCCCceEEEEEECCHHHH-HHHHH
Confidence 46778899865 357889999999 8775 5666665555 479999999876544 44444
No 34
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.31 E-value=4.5 Score=34.21 Aligned_cols=57 Identities=21% Similarity=0.209 Sum_probs=41.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcc---------cccccCCC-C-CceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLK---------VHPLWSRR-G-HSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~k---------v~~l~g~~-G-h~g~aVV~F~~dw~Gf~nA~~ 190 (630)
..+.|-|++.. .+...|++.|+. |.++. ++..+++. | +.|+|.|.|.+.- .-..|+.
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~-~A~~Ai~ 83 (113)
T 2cpe_A 16 SAIYVQGLNDS---------VTLDDLADFFKQ--CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP-TAKAAVE 83 (113)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHTT--TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHH-HHHHHHH
T ss_pred CEEEEcCCCCC---------CCHHHHHHHHHh--cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHH-HHHHHHH
Confidence 46778899864 356889999999 88876 77777632 3 5799999998543 3444544
No 35
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=75.24 E-value=2.4 Score=36.47 Aligned_cols=54 Identities=22% Similarity=0.378 Sum_probs=41.2
Q ss_pred EEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHH
Q 038527 124 GIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 124 gII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
+.|-|+|.. .+...|++.|+. |.++ .|+...+..++.|++.|.|.+.-+ -..|+
T Consensus 8 lfV~nLp~~---------~te~~L~~~F~~--~G~v~~v~i~~d~~~~kg~afV~f~~~~~-A~~Ai 62 (115)
T 4f25_A 8 IFIKNLDKS---------IDNKALYDTFSA--FGNILSCKVVCDENGSKGYGFVHFETQEA-AERAI 62 (115)
T ss_dssp EEEESCCTT---------CCHHHHHHHHGG--GSCEEEEEEEEETTEEEEEEEEEESCHHH-HHHHH
T ss_pred EEECCCCCC---------CCHHHHHHHHhc--cCCEEEEEEeecCCCCCceEEEEECCHHH-HHHHH
Confidence 567888764 367899999999 8875 677777888889999999986444 34444
No 36
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=75.07 E-value=51 Score=35.32 Aligned_cols=88 Identities=11% Similarity=0.059 Sum_probs=49.6
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 249 AEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQ---MDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEK 325 (630)
Q Consensus 249 ~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meE---k~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ek 325 (630)
.+..+.-...|..|.+.|..-.+.-...-.-++.++..|+..+.+ ++....+|.++++.-+..-.+.+..-|....-
T Consensus 59 dk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~ 138 (390)
T 1deq_A 59 DEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINL 138 (390)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333354455555555555555555555555555555555555543 57777778888776655555555555555555
Q ss_pred HHHHHHHHHHH
Q 038527 326 ATSQLEAQKMQ 336 (630)
Q Consensus 326 l~~eLe~k~~e 336 (630)
|+.-|+.+..+
T Consensus 139 Lq~~l~~q~~k 149 (390)
T 1deq_A 139 LQKNVRDQLVD 149 (390)
T ss_pred HHHHHHHHHHH
Confidence 55555554433
No 37
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=74.55 E-value=3.3 Score=33.74 Aligned_cols=58 Identities=22% Similarity=0.170 Sum_probs=40.3
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcc-cccccCC-C-CCceeEEEEeCCChhhhHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLK-VHPLWSR-R-GHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~k-v~~l~g~-~-Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
|.++.|-|+|.. .+..+|++.|+. |.++. +..+..+ . -++|++.|.|.+. ..-..|+.
T Consensus 15 ~~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~~~~~~~~~~g~~~g~afV~f~~~-~~a~~Ai~ 75 (95)
T 2ek1_A 15 PTVIKVQNMPFT---------VSIDEILDFFYG--YQVIPGSVCLKYNEKGMPTGEAMVAFESR-DEATAAVI 75 (95)
T ss_dssp CEEEEEECCCTT---------CCHHHHHHHTTT--SCBCTTCCEEEECTTSCEEEEEEEEESSH-HHHHHHHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHh--cCCccceEEEEeCCCCCEeeEEEEEECCH-HHHHHHHH
Confidence 567889999875 367889999999 87764 5555433 2 3679999999754 33344443
No 38
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=73.89 E-value=4.9 Score=33.51 Aligned_cols=49 Identities=27% Similarity=0.360 Sum_probs=37.9
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC-CceeEEEEeCCC
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG-HSGFAVVEFYKD 181 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G-h~g~aVV~F~~d 181 (630)
..+.|-|+|.. .+...|.+.|+. |.++ .++...++.| +.|++.|.|.+.
T Consensus 30 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~ 80 (107)
T 3ulh_A 30 GKLLVSNLDFG---------VSDADIQELFAE--FGTLKKAAVHYDRSGRSLGTADVHFERK 80 (107)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHHHT--TSCEEEEEEEECTTSCEEEEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEECCCCCcceEEEEEECCH
Confidence 46778898865 367889999999 8775 6777777665 479999999854
No 39
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=72.69 E-value=4.8 Score=35.67 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=37.9
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCC-ceeEEEEeCCChh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGH-SGFAVVEFYKDWA 183 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh-~g~aVV~F~~dw~ 183 (630)
.+.|-|+|.. .+...|++.|+. |.+. .++...++.|. +|++.|.|.+.-.
T Consensus 97 ~l~v~nl~~~---------~t~~~l~~~F~~--~G~i~~v~~~~~~~g~~~g~afV~f~~~~~ 148 (175)
T 3nmr_A 97 KLFIGMISKK---------CTENDIRVMFSS--FGQIEECRILRGPDGLSRGCAFVTFTTRAM 148 (175)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGG--GSCEEEEEEEECTTSCEEEEEEEEESSHHH
T ss_pred eEEEcCCCCc---------CCHHHHHHHHHh--CCCEEEEEEEECCCCCEEEEEEEEECCHHH
Confidence 5778888764 367889999999 8774 56666666664 8999999987543
No 40
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=72.60 E-value=74 Score=31.00 Aligned_cols=136 Identities=23% Similarity=0.218 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 038527 325 KATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGL 404 (630)
Q Consensus 325 kl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~LEkqL 404 (630)
.|..+||..+..++.+.++|....+.-..+...+....+. ..-+-.++-..+-+-+..-...++.+..+|..||..-
T Consensus 42 ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~---~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~N 118 (189)
T 2v71_A 42 ELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH---QYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQAN 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777777777777665443333333222111111 1111111111111222333356778889999999888
Q ss_pred hHHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHH
Q 038527 405 DAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKEL 480 (630)
Q Consensus 405 d~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~l 480 (630)
| -||-........|+-+.++-+ ....++.=|..+|.+|+ .|...+|-|. ||+-+.|.+|
T Consensus 119 D---dlEr~~R~~~~SleD~e~kln---~aiEr~alLE~El~EKe----~l~~~~QRLk-------dE~rDLk~El 177 (189)
T 2v71_A 119 D---DLERAKRATIMSLEDFEQRLN---QAIERNAFLESELDEKE----SLLVSVQRLK-------DEARDLRQEL 177 (189)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHCCC---------------------
T ss_pred h---HHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHH
Confidence 7 477777777788887777611 24667777888888755 2344444443 5555555544
No 41
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.52 E-value=44 Score=30.12 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=1.6
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 270 DMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKM 308 (630)
Q Consensus 270 n~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~km 308 (630)
+++..++|.-|......|.........-......||..+
T Consensus 5 ~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~el 43 (131)
T 3tnu_A 5 EKNRKDAEEWFFTKTEELNREVATNSELVQSGKSEISEL 43 (131)
T ss_dssp ------------------------------------CHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455677787787777777766655544445556666555
No 42
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=71.72 E-value=3.7 Score=34.18 Aligned_cols=59 Identities=20% Similarity=0.391 Sum_probs=41.8
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCC--CCceeEEEEeCCChhhhHHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRR--GHSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~--Gh~g~aVV~F~~dw~Gf~nA~~l 191 (630)
+..+.|-|+|.. .+...|++.|+. |....++...++. -+.|++.|.|.+ ...-..|+.|
T Consensus 15 ~~~l~V~nLp~~---------~t~~~l~~~F~~--~gi~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~l 75 (103)
T 2dng_A 15 PYTAYVGNLPFN---------TVQGDIDAIFKD--LSIRSVRLVRDKDTDKFKGFCYVEFDE-VDSLKEALTY 75 (103)
T ss_dssp CEEEEEESCCTT---------CCHHHHHHHTTT--SCEEEEEEEECSSSCSEEEEEEEEESS-HHHHHHHGGG
T ss_pred CeEEEEeCCCCC---------CCHHHHHHHHHh--CCceEEEEeecCCCCccceEEEEEECC-HHHHHHHHhh
Confidence 456778898875 367889999999 8666777776653 368999999975 3344444433
No 43
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=71.26 E-value=6.4 Score=32.70 Aligned_cols=51 Identities=27% Similarity=0.372 Sum_probs=37.4
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccC---CCCCceeEEEEeCCChh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWS---RRGHSGFAVVEFYKDWA 183 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g---~~Gh~g~aVV~F~~dw~ 183 (630)
..+.|-|+|.. .+...|++.|+. |.++ .++...+ ..-+.|++.|.|.+.-.
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~ 70 (107)
T 2cph_A 16 SKILVRNIPFQ---------ANQREIRELFST--FGELKTVRLPKKMTGTGAHRGFGFVDFITKQD 70 (107)
T ss_dssp CCEEEESCCTT---------CCHHHHHHHHHT--TSCEEEEECCCCCSSSCSSCSEEEEEESSHHH
T ss_pred CEEEEeCCCCc---------CCHHHHHHHHHc--cCCeEEEEEecCCCCCCCcCceEEEEECCHHH
Confidence 45678898865 367889999999 8775 5555555 33468999999987443
No 44
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=71.08 E-value=5.4 Score=33.80 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=38.1
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
++.|-|+|.. .+...|.+.|+. |.++.-..+.......|++.|.|.+.-. -..|+.
T Consensus 10 ~l~V~nlp~~---------~t~~~l~~~F~~--~G~v~~v~i~~~~~~~g~afV~f~~~~~-A~~A~~ 65 (115)
T 3lqv_A 10 ILYIRNLPYK---------ITAEEMYDIFGK--YGPIRQIRVGNTPETRGTAYVVYEDIFD-AKNAVD 65 (115)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHT--TSCEEEEEEECSTTTTTCEEEEESSHHH-HHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEeeCCCCCcEEEEEECCHHH-HHHHHH
Confidence 5678898764 367889999999 8876444333344458999999986433 234443
No 45
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.95 E-value=4.4 Score=35.18 Aligned_cols=57 Identities=16% Similarity=0.324 Sum_probs=40.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcc--cccccCCCC-CceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLK--VHPLWSRRG-HSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~k--v~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.++.|-|+|.. .+...|.+.|+. |.++. +.+.....| +.|++.|.|.+.- .-..|+.
T Consensus 26 ~~l~V~nLp~~---------~te~~l~~~F~~--~G~v~~~~~~~~~~~g~~~G~afV~F~~~~-~a~~Al~ 85 (124)
T 1wel_A 26 FCVYLKGLPFE---------AENKHVIDFFKK--LDIVEDSIYIAYGPNGKATGEGFVEFRNEA-DYKAALC 85 (124)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHSCS--SCBCTTTCEEEECTTSSEEEEEEEEBSSSH-HHHHHHT
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHh--cCCccceEEEEECCCCCCCeEEEEEECCHH-HHHHHHH
Confidence 57889999875 356889999998 87764 333444455 4799999998654 3445554
No 46
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=70.84 E-value=5.6 Score=32.12 Aligned_cols=57 Identities=18% Similarity=0.106 Sum_probs=38.5
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
-.+.|-|+|.. .+...|++.|+. |.++ .+........+.|++.|.|.+.-. -..|+.
T Consensus 9 ~~l~V~nlp~~---------~t~~~l~~~f~~--~G~v~~~~i~~~~g~~~g~afV~f~~~~~-a~~a~~ 66 (92)
T 2dgv_A 9 CQIFVRNLPFD---------FTWKMLKDKFNE--CGHVLYADIKMENGKSKGCGVVKFESPEV-AERACR 66 (92)
T ss_dssp CEEEECSCCTT---------CCHHHHHHHHHT--TSCEEEEEEEESSSCEEEEEEEEESSHHH-HHHHHH
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEEccCCCcceEEEEEECCHHH-HHHHHH
Confidence 35678888764 367889999999 8775 444444434468999999986433 344443
No 47
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=69.64 E-value=4.5 Score=36.64 Aligned_cols=58 Identities=22% Similarity=0.197 Sum_probs=43.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCC----cccccccCCCC-CceeEEEEeCCChhhhHHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNP----LKVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p----~kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~l 191 (630)
..+.|-|+|.. .+...|++.|+. |.+ ..|+.++++.| ++|++.|.|.+ -..-..|+.+
T Consensus 45 ~~lfVgnLp~~---------~te~dL~~~F~~--~G~v~~v~~v~i~~d~~g~srG~aFV~F~~-~e~a~~Al~~ 107 (136)
T 2hgl_A 45 FVVKLRGLPWS---------CSVEDVQNFLSD--CTIHDGAAGVHFIYTREGRQSGEAFVELGS-EDDVKMALKK 107 (136)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHTTT--CCCSSSSTTEEEEECSSSCEEEEEEEECSS-HHHHHHHHTT
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHH--hCCcCceeEEEEEECCCCCCCeEEEEEECC-HHHHHHHHhc
Confidence 46778998875 367889999999 765 57888887766 57999999975 3444555543
No 48
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=69.61 E-value=5 Score=32.92 Aligned_cols=57 Identities=23% Similarity=0.187 Sum_probs=38.8
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcc-cccccCC-CC-CceeEEEEeCCChhhhHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLK-VHPLWSR-RG-HSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~k-v~~l~g~-~G-h~g~aVV~F~~dw~Gf~nA~ 189 (630)
|..+.|-|+|.. .+...|++.|+. |.++. +..+..+ .| +.|++.|.|.+.- .-..|+
T Consensus 15 ~~~l~v~nLp~~---------~t~~~l~~~F~~--~G~v~~~~~~~~~~~g~~~g~afV~f~~~~-~a~~Ai 74 (98)
T 2cqp_A 15 PTIIKVQNMPFT---------VSIDEILDFFYG--YQVIPGSVCLKYNEKGMPTGEAMVAFESRD-EATAAV 74 (98)
T ss_dssp SEEEEEESCCTT---------CCHHHHHHHTTT--SCCCTTTCEEEECSSSCEEEEEEEEESCHH-HHHHHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHH--cCCccceEEEEECCCCCeeeEEEEEECCHH-HHHHHH
Confidence 456778898865 367889999999 87764 4444433 33 5799999997643 334444
No 49
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.49 E-value=63 Score=28.96 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=4.8
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 270 DMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKM 308 (630)
Q Consensus 270 n~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~km 308 (630)
++...++|.-|......|.........-..+...||..+
T Consensus 3 ~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~el 41 (129)
T 3tnu_B 3 NRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEM 41 (129)
T ss_dssp -------------------------------CHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 345567777777777777666555444445556666655
No 50
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=69.31 E-value=1.7 Score=31.29 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=17.9
Q ss_pred eeccCCCCCCccccchHHHHhhhhc
Q 038527 40 YRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 40 ~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
-+|-||..+ +-+++.|+-|-..
T Consensus 10 qhcrfckkk---ysdvknlikhire 31 (37)
T 2elu_A 10 QHCRFCKKK---YSDVKNLIKHIRD 31 (37)
T ss_dssp CEETTTTEE---CSSHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHH
Confidence 699999644 7789999999654
No 51
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=69.18 E-value=7 Score=32.45 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=38.0
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC-CceeEEEEeCCChh
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG-HSGFAVVEFYKDWA 183 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G-h~g~aVV~F~~dw~ 183 (630)
+..+.|-|+|.. .+...|.+.|+. |.++ .++...++.| +.|++.|.|.+.-.
T Consensus 15 ~~~l~v~nLp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 68 (105)
T 2dnh_A 15 DRKLFVGMLNKQ---------QSEEDVLRLFQP--FGVIDECTVLRGPDGSSKGCAFVKFSSHTE 68 (105)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHTT--TSCEEEEEEEECSSSCEEEEEEEEESSHHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEECCCCCcCcEEEEEeCCHHH
Confidence 456778898865 356889999999 8764 5566656544 47999999987443
No 52
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.11 E-value=7.3 Score=33.25 Aligned_cols=57 Identities=9% Similarity=0.047 Sum_probs=40.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC-CceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~ 190 (630)
-++.|-|+|.. .+...|++.|+. |.++ .|+...++.| +.|++.|.|.+. ..-..|+.
T Consensus 12 ~~lfV~~Lp~~---------~te~~L~~~F~~--~G~v~~v~i~~d~~g~~rG~aFV~F~~~-e~a~~Ai~ 70 (103)
T 1s79_A 12 RSVYIKGFPTD---------ATLDDIKEWLED--KGQVLNIQMRRTLHKAFKGSIFVVFDSI-ESAKKFVE 70 (103)
T ss_dssp GCEEEECCCTT---------CCHHHHHHHHHT--SSCEEEEEEECCCTTSCCCEEEEEESSH-HHHHHHHT
T ss_pred CEEEEECCCCC---------CCHHHHHHHHhh--cCCEEEEEEEECCCCCCccEEEEEECCH-HHHHHHHH
Confidence 45677888765 367889999999 8875 5666665544 689999999763 33344444
No 53
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=69.08 E-value=2.7 Score=27.77 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=19.7
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
..+.+|.||.|+.. |.....|.+|-.
T Consensus 7 ~~~k~~~C~~C~k~---f~~~~~l~~H~~ 32 (37)
T 1p7a_A 7 TGIKPFQCPDCDRS---FSRSDHLALHRK 32 (37)
T ss_dssp CCSSSBCCTTTCCC---BSSHHHHHHHHG
T ss_pred CCCCCccCCCCCcc---cCcHHHHHHHHH
Confidence 35678999999754 667778888854
No 54
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=68.80 E-value=84 Score=30.12 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhch
Q 038527 389 EKEKLRRKIIELQKGL 404 (630)
Q Consensus 389 EKe~~~~kil~LEkqL 404 (630)
++..+..+|..|||+-
T Consensus 119 e~r~L~Ekl~~lEKe~ 134 (168)
T 3o0z_A 119 ERKEAQDMLNHSEKEK 134 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666777776653
No 55
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=68.36 E-value=7.3 Score=32.38 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=40.7
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC--CCceeEEEEeCCChhhhHHHHH-HHh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR--GHSGFAVVEFYKDWAGFKNAIM-FEK 193 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~--Gh~g~aVV~F~~dw~Gf~nA~~-lek 193 (630)
-.+.|-|+|.. .+...|++.|+. |.++ .|+...++. -+.|++.|.|.+.-. -..|+. |+.
T Consensus 14 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~-A~~A~~~l~g 77 (106)
T 2dgp_A 14 IKLFIGQIPRN---------LDEKDLKPLFEE--FGKIYELTVLKDRFTGMHKGCAFLTYCERES-ALKAQSALHE 77 (106)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHHHH--HSCCCEEECCCCSSSCSCCSEEEEEESSHHH-HHHHHHHHTT
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCeeEEEEEecCCCCCcceEEEEEECCHHH-HHHHHHHhcC
Confidence 45678898864 356789999999 7664 566655443 367999999986443 344543 444
No 56
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.25 E-value=7.1 Score=32.17 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=39.3
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC-CceeEEEEeCCChhhhHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG-HSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~ 189 (630)
-.+.|-|+|.. .+..+|.+.|+. |.++ .++...++.| ++|++.|.|...-. -..|+
T Consensus 18 ~~l~v~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~-a~~A~ 75 (100)
T 2do4_A 18 HKLFISGLPFS---------CTKEELEEICKA--HGTVKDLRLVTNRAGKPKGLAYVEYENESQ-ASQAV 75 (100)
T ss_dssp SCEEEESCCTT---------CCHHHHHHHHTT--TSCEEEEEEEECTTSCEEEEEEEEESSHHH-HHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--CCCeEEEEEEECCCCCEEeEEEEEECCHHH-HHHHH
Confidence 45778898865 367889999999 8774 5666666644 56999999976433 34444
No 57
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=68.05 E-value=6.2 Score=31.40 Aligned_cols=53 Identities=15% Similarity=0.235 Sum_probs=38.0
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC--C-CceeEEEEeCCChhh
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR--G-HSGFAVVEFYKDWAG 184 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~--G-h~g~aVV~F~~dw~G 184 (630)
|-.+.|-|+|.. .+...|.+.|+. |.+. .+....+.. + +.|++.|.|.+.-..
T Consensus 4 ~~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a 60 (88)
T 4a8x_A 4 PTKVHIGRLTRN---------VTKDHIMEIFST--YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEA 60 (88)
T ss_dssp CCEEEEECCCTT---------CCHHHHHHHHHT--TSCEEEEECCEETTEEEEECSEEEEEESSHHHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHh--CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHH
Confidence 446778898764 367889999999 8775 444444442 4 789999999876543
No 58
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=67.88 E-value=2.6 Score=25.79 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=17.3
Q ss_pred CeeeccCCCCCCccccchHHHHhhhh
Q 038527 38 TAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
++|.|+.|+.. |.....|..|..
T Consensus 1 ~~~~C~~C~k~---f~~~~~l~~H~~ 23 (29)
T 2m0f_A 1 GPLKCRECGKQ---FTTSGNLKRHLR 23 (29)
T ss_dssp CCEECTTTSCE---ESCHHHHHHHHH
T ss_pred CCccCCCCCCc---cCChhHHHHHHH
Confidence 47999999743 667778888854
No 59
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.75 E-value=11 Score=31.91 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=43.0
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC--CCceeEEEEeCCChhhhHHHHHHHh
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR--GHSGFAVVEFYKDWAGFKNAIMFEK 193 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~--Gh~g~aVV~F~~dw~Gf~nA~~lek 193 (630)
...+.|-|++.. .+...|++.|+. |.++ .++...++. -+.|++.|.|.+ -..-..|+.|+.
T Consensus 25 ~~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~A~~l~g 88 (114)
T 2cq4_A 25 ARTVFCMQLAAR---------IRPRDLEDFFSA--VGKVRDVRIISDRNSRRSKGIAYVEFCE-IQSVPLAIGLTG 88 (114)
T ss_dssp HTEEEEESCCTT---------CCHHHHHHHHTT--TSCEEEEEECCSCCSSSCCCCEEEEESC-GGGHHHHHHHTT
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHh--CCCEeEEEEEecCCCCccCcEEEEEeCc-HHHHHHHHHcCC
Confidence 456778999865 356889999999 8764 566666553 467999999965 445566665543
No 60
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=66.73 E-value=1e+02 Score=30.42 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHh
Q 038527 377 EKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQ 408 (630)
Q Consensus 377 e~vlkL~e~hkrEKe~~~~kil~LEkqLd~kQ 408 (630)
..+.+-++-.+++...+.+.|+++..++++.+
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~ 124 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKS 124 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666666666666666555543
No 61
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=66.67 E-value=8.9 Score=33.02 Aligned_cols=57 Identities=23% Similarity=0.239 Sum_probs=40.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCC-cccccccCCCC-CceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNP-LKVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p-~kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~ 190 (630)
..+.|-|++.. .+...|++.|+. |.+ ..++...+..| +.|++.|.|.+-- .-..|+.
T Consensus 36 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~v~~v~i~~~~~g~~~g~afV~f~~~~-~A~~Ai~ 94 (124)
T 2kt5_A 36 AKLLVSNLDFG---------VSDADIQELFAE--FGTLKKAAVDYDRSGRSLGTADVHFERRA-DALKAMK 94 (124)
T ss_dssp EEEEEESCCSS---------CCHHHHHHHHHT--TSCCSEEEEECCSSSSCCSEEEEEESSHH-HHHHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCeeEEEEEECCCCCEeeEEEEEECCHH-HHHHHHH
Confidence 46778898764 367889999999 765 46666666655 6799999997643 3344444
No 62
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.11 E-value=7.3 Score=30.26 Aligned_cols=57 Identities=18% Similarity=0.319 Sum_probs=38.7
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~l 191 (630)
.+.|-|+|.. .+..+|++.|+. |.+. .+....++ ..+.|++.|.|.+.- .-..|+..
T Consensus 2 ~l~v~nlp~~---------~t~~~l~~~F~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~a~~~ 61 (77)
T 1uaw_A 2 KMFIGGLSWQ---------TTQEGLREYFGQ--FGEVKECLVMRDPLTKRSRGFGFVTFMDQA-GVDKVLAQ 61 (77)
T ss_dssp CEEEESCCSS---------CCSHHHHHHHTT--TSCCCCEEEECCCCSSSCSSEEEECCCCTT-HHHHHHHT
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEecCCCCCCcCceEEEEEcCHH-HHHHHHHh
Confidence 4667888765 366789999999 8764 45555544 346899999998644 33444443
No 63
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=65.59 E-value=3.4 Score=25.30 Aligned_cols=22 Identities=14% Similarity=0.594 Sum_probs=16.9
Q ss_pred CeeeccCCCCCCccccchHHHHhhh
Q 038527 38 TAYRCPFCRGKKETDYLYKELLQHA 62 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y~~~~LLqHA 62 (630)
.+|.|+.|+.. |.....|..|-
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~ 23 (27)
T 2kvh_A 2 KPFSCSLCPQR---SRDFSAMTKHL 23 (27)
T ss_dssp CCEECSSSSCE---ESSHHHHHHHH
T ss_pred cCccCCCcChh---hCCHHHHHHHH
Confidence 57999999744 66777888884
No 64
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=65.55 E-value=8.3 Score=30.68 Aligned_cols=57 Identities=18% Similarity=0.425 Sum_probs=38.7
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
..+.|-|+|.. .+...|++.|+. |.+. .++...++ ..+.|++.|.|.+.- .-..|+.
T Consensus 7 ~~l~v~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~A~~A~~ 66 (87)
T 3bs9_A 7 FHVFVGDLSPE---------ITTAAIAAAFAP--FGRISDARVVKDMATGKSKGYGFVSFFNKW-DAENAIQ 66 (87)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSHH-HHHHHHH
T ss_pred eEEEEeCCCCC---------CCHHHHHHHHHh--cCCEeEEEEEecCCCCccceEEEEEECCHH-HHHHHHH
Confidence 35678888764 367889999999 8764 55555553 346899999997633 3344443
No 65
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=65.52 E-value=8.3 Score=31.79 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=40.6
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcc---------cccccCCC--CCceeEEEEeCCChhhhHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLK---------VHPLWSRR--GHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~k---------v~~l~g~~--Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
+..+.|-|++.. .+...|++.|+. |.+.. ++...++. .+.|++.|.|.+.-.. ..|+
T Consensus 13 ~~~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a-~~Ai 80 (99)
T 2la6_A 13 NNTIFVQGLGEN---------VTIESVADYFKQ--IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSA-KAAI 80 (99)
T ss_dssp CSEEEEECCCSS---------CCHHHHHHHHTT--TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHH-HHHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHH--hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHH-HHHH
Confidence 356778898764 367889999999 87765 56666543 3579999999865433 4444
Q ss_pred H
Q 038527 190 M 190 (630)
Q Consensus 190 ~ 190 (630)
.
T Consensus 81 ~ 81 (99)
T 2la6_A 81 D 81 (99)
T ss_dssp H
T ss_pred H
Confidence 3
No 66
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=65.33 E-value=11 Score=30.54 Aligned_cols=57 Identities=18% Similarity=0.211 Sum_probs=39.1
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-cc-ccccCC--CCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KV-HPLWSR--RGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv-~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
..+.|-|+|.. .+...|.+.|+. |.++ .+ +...++ ..+.|++.|.|.+.- .-..|+.
T Consensus 6 ~~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~-~A~~A~~ 66 (96)
T 1x5t_A 6 SGIFIGNLDPE---------IDEKLLYDTFSA--FGVILQTPKIMRDPDTGNSKGYAFINFASFD-ASDAAIE 66 (96)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHHT--TSCBSSCCEECCCTTTCSCCSEEEEEBSSHH-HHHHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCeeEEEEEEEcCCCCCcCeEEEEEECCHH-HHHHHHH
Confidence 35678888865 367889999999 8875 45 555542 336899999998643 3344444
No 67
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=65.31 E-value=7.7 Score=33.02 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=39.8
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
+..+.|-|++.. .+...|.+.|+. |.++ .++...++ ..+.|++.|.|.+ -..-..|+.
T Consensus 25 ~~~lfV~nLp~~---------~te~~L~~~F~~--~G~i~~v~i~~~~~tg~~kg~afV~f~~-~~~A~~Ai~ 85 (109)
T 2rs2_A 25 GCKMFIGGLSWQ---------TTQEGLREYFGQ--FGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLA 85 (109)
T ss_dssp -CCEEEESCCTT---------CCHHHHHHHHTT--TSCEEEEEECCCTTTCCCTTCEEEEESS-HHHHHHHHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHc--cCCeEEEEEEECCCCCCcCcEEEEEECC-HHHHHHHHH
Confidence 356778898865 367889999999 8775 55655554 3468999999975 333444443
No 68
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=65.22 E-value=7.3 Score=32.24 Aligned_cols=57 Identities=21% Similarity=0.404 Sum_probs=40.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC-CceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~ 190 (630)
..+.|-|++.. .+...|.+.|+. |.++ .++...++.| +.|++.|.|.+.-.. ..|+.
T Consensus 10 ~~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a-~~Ai~ 68 (102)
T 2xs2_A 10 NTVFVGGIDVR---------MDETEIRSFFAR--YGSVKEVKIITDRTGVSKGYGFVSFYNDVDV-QKIVE 68 (102)
T ss_dssp EEEEEECCCTT---------CCHHHHHHHHGG--GSCEEEEEEEECTTSCEEEEEEEEESSCCCH-HHHTT
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--CCCeEEEEEEECCCCCccceEEEEECCHHHH-HHHHh
Confidence 45778888764 367889999999 8775 5666666544 579999999865443 44443
No 69
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=64.94 E-value=6.8 Score=35.74 Aligned_cols=58 Identities=21% Similarity=0.449 Sum_probs=40.6
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC-CC-CceeEEEEeCCChhhhHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR-RG-HSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~-~G-h~g~aVV~F~~dw~Gf~nA~~ 190 (630)
++++.|-|+|.. .+...|.+.|+. |.++ .|....++ .| +.|+++|.|.+ ...-..|+.
T Consensus 72 ~~~l~V~nLp~~---------~t~~~L~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~Ai~ 132 (165)
T 1rk8_A 72 GWILFVTSIHEE---------AQEDEIQEKFCD--YGEIKNIHLNLDRRTGFSKGYALVEYET-HKQALAAKE 132 (165)
T ss_dssp CEEEEEESCCTT---------CCHHHHHHHHGG--GSCEEEEEEEECTTTSSEEEEEEEEESS-HHHHHHHHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHhhc--CCCEEEEEEEecCCCCcEeeEEEEEECC-HHHHHHHHH
Confidence 478889999875 367889999999 8775 44444443 23 57999999985 344444443
No 70
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.93 E-value=10 Score=30.78 Aligned_cols=56 Identities=14% Similarity=0.225 Sum_probs=38.6
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.+.|-|++.. .+...|++.|+. |.++ .+....++ .-+.|++.|.|.+.-. -..|+.
T Consensus 7 ~l~v~nlp~~---------~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~ 65 (95)
T 2dnz_A 7 GLYVGSLHFN---------ITEDMLRGIFEP--FGKIDNIVLMKDSDTGRSKGYGFITFSDSEC-ARRALE 65 (95)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHTT--TSCEEEEEEECCSSSCCCCSEEEEEESCHHH-HHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--cCCEeEEEEeecCCCCceeeEEEEEECCHHH-HHHHHH
Confidence 5678888764 367889999999 8765 55555553 3467999999987433 344443
No 71
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.17 E-value=5.8 Score=32.51 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=35.4
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC-----CCceeEEEEeCCC
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR-----GHSGFAVVEFYKD 181 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~-----Gh~g~aVV~F~~d 181 (630)
.+.|-|+|.. .+...|++.|+. |.++ .+....++. -+.|++.|.|.+.
T Consensus 7 ~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~ 60 (98)
T 2cpf_A 7 GLFIKNLNFS---------TTEETLKGVFSK--VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKP 60 (98)
T ss_dssp CEEEESCCTT---------CCHHHHHHHHHT--TSCEEEEEEEEEECTTCCEEEEEEEEEEESSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEecCCCCCCcCcccEEEEEECCH
Confidence 4678888764 367889999999 8875 555555443 4679999999863
No 72
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=64.06 E-value=11 Score=31.58 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=39.6
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC--CCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR--GHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~--Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
..+.|-|+|.. .+...|.+.|+. |.++ .++..+++. -+.|++.|.|.+.-. -..|+.
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~-A~~A~~ 75 (111)
T 1x4h_A 16 KTVFIRNLSFD---------SEEEALGEVLQQ--FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEA-AQKCLA 75 (111)
T ss_dssp CCEEEESCCTT---------CCHHHHHHHHHT--TSCEEEEECCBCSSSCCBCSEEEEEESSHHH-HHHHHH
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHh--cCCeEEEEEEecCCCCCCccEEEEEECCHHH-HHHHHH
Confidence 35678898864 367889999999 8775 555555543 368999999986443 344443
No 73
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.99 E-value=8.6 Score=31.70 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=35.7
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC--CCceeEEEEeCCC
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR--GHSGFAVVEFYKD 181 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~--Gh~g~aVV~F~~d 181 (630)
..+.|-|+|.. .+...|.+.|+. |.++ .++...++. .+.|++.|.|.+.
T Consensus 13 ~~l~v~nLp~~---------~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 64 (102)
T 1x5s_A 13 GKLFVGGLSFD---------TNEQSLEQVFSK--YGQISEVVVVKDRETQRSRGFGFVTFENI 64 (102)
T ss_dssp SEEEEESCCTT---------CCHHHHHHHHHH--HSCCCEEEECCCSSSCSCCSEEEEECSSH
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHh--cCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 45778898864 367889999999 8775 555555432 3678999999763
No 74
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=63.44 E-value=94 Score=28.73 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=4.3
Q ss_pred HHHHHHHHHhhh
Q 038527 441 IIKEIKEKEGEM 452 (630)
Q Consensus 441 l~~~l~ek~~~l 452 (630)
+...+......+
T Consensus 221 ~~~~l~~l~~~~ 232 (284)
T 1c1g_A 221 YEEEIKVLSDKL 232 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 75
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.39 E-value=7.1 Score=33.38 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=36.9
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCC-----CCceeEEEEeCCCh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRR-----GHSGFAVVEFYKDW 182 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~-----Gh~g~aVV~F~~dw 182 (630)
.+.|-|+|.. .+...|++.|+. |.++.+..+.... -+.|++.|.|.+.-
T Consensus 10 ~lfVgnLp~~---------~te~~L~~~F~~--~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~ 63 (114)
T 2dnl_A 10 KVFVGGLPPD---------IDEDEITASFRR--FGPLVVDWPHKAESKSYFPPKGYAFLLFQEES 63 (114)
T ss_dssp CEEEECCCTT---------CCHHHHHHHTTT--TCCCCEECTTSSSSCCCSCTTSEEEECCSSHH
T ss_pred EEEEcCCCCC---------CCHHHHHHHHHh--cCCEEEEEeecCCCCCCCCcccEEEEEECCHH
Confidence 3567788764 367889999999 9888766666543 46899999998744
No 76
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.28 E-value=9.5 Score=32.11 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=39.5
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC-CceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.+.|-|++.. .+...|++.|+. |.++ .++...++.| +.|++.|.|.+.- .-..|+.
T Consensus 17 ~l~V~nlp~~---------~~~~~l~~~f~~--~G~i~~~~i~~~~~g~~~g~afV~f~~~~-~a~~A~~ 74 (114)
T 2do0_A 17 TVFVANLDYK---------VGWKKLKEVFSM--AGVVVRADILEDKDGKSRGIGTVTFEQSI-EAVQAIS 74 (114)
T ss_dssp CEEEESCCTT---------CCHHHHHHHHTT--TSCEEEEEEEECTTCSEEEEEEEEESSHH-HHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEECCCCCeeeEEEEEECCHH-HHHHHHH
Confidence 5778898864 367889999999 8664 5666666655 4799999998633 3334443
No 77
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=62.76 E-value=8.5 Score=32.52 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=37.5
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc---ccccccCCC--CCceeEEEEeCCChhh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL---KVHPLWSRR--GHSGFAVVEFYKDWAG 184 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~---kv~~l~g~~--Gh~g~aVV~F~~dw~G 184 (630)
+++|-|+|.. .+...|++.|+. |.+. .|+...++. -++|++.|.|.+.-..
T Consensus 11 tlfV~nL~~~---------~tee~L~~~F~~--~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A 66 (95)
T 2lkz_A 11 TIILRNIAPH---------TVVDSIMTALSP--YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDA 66 (95)
T ss_dssp EEEEESCCTT---------CCHHHHHHHSTT--TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHH
T ss_pred EEEEeCCCCc---------CCHHHHHHHHHh--hCCccEEEEEEEecCCCCCCceEeEEEECCHHHH
Confidence 4678898875 367899999999 8753 555665543 3579999999876543
No 78
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=62.47 E-value=9.6 Score=33.28 Aligned_cols=57 Identities=18% Similarity=0.140 Sum_probs=37.3
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
++.+.|-|+|.. .+...|++.|+.-|+....+.+.. ....|++.|.|.+. ..-..|+
T Consensus 28 ~~~l~VgnLp~~---------~te~dL~~~F~~~G~~v~~v~i~~--~~~rGfaFV~F~~~-e~A~~Ai 84 (111)
T 2jvr_A 28 RYRITMKNLPEG---------CSWQDLKDLARENSLETTFSSVNT--RDFDGTGALEFPSE-EILVEAL 84 (111)
T ss_dssp CEEEEEECSSCC---------CCHHHHHHHHHHHTCCCSEEECSS--CSSSCCEEEEESSH-HHHHHHH
T ss_pred CCEEEEECCCCC---------CCHHHHHHHHHHhCCeeEEEEEEc--CCCCCEEEEEECCH-HHHHHHH
Confidence 357889999875 367899999999332233444332 34789999999863 3334443
No 79
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=62.25 E-value=4.1 Score=24.96 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=17.7
Q ss_pred CeeeccCCCCCCccccchHHHHhhhh
Q 038527 38 TAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.+|.|+.|+.. |.....|..|-.
T Consensus 2 k~~~C~~C~~~---f~~~~~l~~H~~ 24 (30)
T 2m0d_A 2 KPYQCDYCGRS---FSDPTSKMRHLE 24 (30)
T ss_dssp CCEECTTTCCE---ESCHHHHHHHHH
T ss_pred cCccCCCCCcc---cCCHHHHHHHHH
Confidence 57999999754 667778888854
No 80
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=62.24 E-value=13 Score=30.32 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=36.3
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCCh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDW 182 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw 182 (630)
-++.|-|+|.. .+...|++.|+. |.++ .+....++ .-+.|++.|.|.+.-
T Consensus 9 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 61 (99)
T 1whw_A 9 GRLFVRNLSYT---------SSEEDLEKLFSA--YGPLSELHYPIDSLTKKPKGFAFVTFMFPE 61 (99)
T ss_dssp EEEEEECCCTT---------CCHHHHHHHHHT--TSCEEEEECCCCTTTCCCCSEEEEEESSHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCEeEEEEEecCCCCCcCeEEEEEECCHH
Confidence 35678888764 356789999999 8775 55555554 336799999998743
No 81
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=62.23 E-value=13 Score=30.45 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=35.4
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCCh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDW 182 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw 182 (630)
.+.|-|++.. .+...|.+.|+. |.++ .++...++ ..+.|++.|.|.+.-
T Consensus 4 ~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~ 55 (96)
T 2x1f_A 4 VVYLGSIPYD---------QTEEQILDLCSN--VGPVINLKMMFDPQTGRSKGYAFIEFRDLE 55 (96)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHT--TSCEEEEECCBCTTTCCBCSEEEEEESSHH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHh--cCCEEEEEEEeCCCCCccceEEEEEECCHH
Confidence 4667788754 367889999999 8775 55555554 346899999998644
No 82
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.19 E-value=4.1 Score=26.56 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=18.5
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
...+|.|+.|+.. |.....|..|-.
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2elt_A 6 SGKPYKCPQCSYA---SAIKANLNVHLR 30 (36)
T ss_dssp CCCSEECSSSSCE---ESSHHHHHHHHH
T ss_pred CCCCCCCCCCCcc---cCCHHHHHHHHH
Confidence 4568999999744 666777888854
No 83
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=62.15 E-value=13 Score=28.71 Aligned_cols=55 Identities=15% Similarity=0.318 Sum_probs=37.5
Q ss_pred EEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHH
Q 038527 124 GIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 124 gII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
+.|-|+|.. .+...|++.|+. |.+. .++...++ .-++|++.|.|.+. ..-..|+.
T Consensus 2 l~v~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~a~~ 59 (75)
T 2mss_A 2 IFVGGLSVN---------TTVEDVKHYFEQ--FGKVDDAMLMFDKTTNRHRGFGFVTFESE-DIVEKVCE 59 (75)
T ss_dssp EEEECCCSS---------CCHHHHHHHHHT--TSCCSEECCCBCSSSTTSCBEEEEECSCH-HHHHHHHS
T ss_pred EEEecCCCC---------CCHHHHHHHHHh--cCCEEEEEEEecCCCCCcCcEEEEEECCH-HHHHHHHH
Confidence 456777764 367889999999 8775 55555543 34679999999875 33344544
No 84
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.07 E-value=6.9 Score=32.45 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=36.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCC
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKD 181 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~d 181 (630)
-.+.|-|+|.. .+..+|.+.|+. |.++ .++.......+.|++.|.|.+.
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~g~~~g~afV~f~~~ 65 (103)
T 2d9p_A 16 VNLYVKNLDDG---------IDDERLRKAFSP--FGTITSAKVMMEGGRSKGFGFVCFSSP 65 (103)
T ss_dssp CCEEEECCCTT---------CCHHHHHHTTTT--TSCEEEEEEEECSSSEEEEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEEcCCCCcCEEEEEEECCH
Confidence 35678898764 367889999999 8775 5566655344689999999854
No 85
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.97 E-value=4.3 Score=26.46 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=19.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
..+.+|.|+.|+.. |.....|..|-.
T Consensus 5 ~~~~~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2elr_A 5 SSGKTHLCDMCGKK---FKSKGTLKSHKL 30 (36)
T ss_dssp CCCSSCBCTTTCCB---CSSHHHHHHHHH
T ss_pred CCCCCeecCcCCCC---cCchHHHHHHHH
Confidence 35678999999744 667778888854
No 86
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.48 E-value=4.3 Score=26.65 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=18.8
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
+..+|.|+.|+.. |..-..|..|..
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2els_A 6 SGKIFTCEYCNKV---FKFKHSLQAHLR 30 (36)
T ss_dssp CCCCEECTTTCCE---ESSHHHHHHHHH
T ss_pred CCCCEECCCCCce---eCCHHHHHHHHH
Confidence 4578999999744 667777888854
No 87
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.30 E-value=7.8 Score=31.98 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=38.1
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCC-CCceeEEEEeCCChhhhHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRR-GHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~-Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
+-.+.|-|+|.. .+...|++.|+. |.++ +.+.... -+.|++.|.|.+.- .-..|+.
T Consensus 15 ~~~l~V~nLp~~---------~t~~~l~~~F~~--~g~v--~~~~~~~g~~~g~afV~f~~~~-~A~~A~~ 71 (101)
T 2fc9_A 15 SKTLVLSNLSYS---------ATEETLQEVFEK--ATFI--KVPQNQNGKSKGYAFIEFASFE-DAKEALN 71 (101)
T ss_dssp CSEEEEESCCTT---------CCHHHHHHHCSS--CSEE--ECCBCSSSCBCSEEEEECSSHH-HHHHHHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHh--CCEE--EEEECCCCCEeeEEEEEECCHH-HHHHHHH
Confidence 356778898865 367889999998 7665 4444443 36799999998533 3344444
No 88
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.22 E-value=12 Score=31.04 Aligned_cols=57 Identities=23% Similarity=0.237 Sum_probs=39.6
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC--CCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR--GHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~--Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
-.+.|-|+|.. .+...|.+.|+. |.++ .+....++. -+.|++.|.|.+.-. -..|+.
T Consensus 14 ~~l~V~nLp~~---------~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-A~~A~~ 73 (103)
T 2dnm_A 14 ITLKVDNLTYR---------TSPDSLRRVFEK--YGRVGDVYIPREPHTKAPRGFAFVRFHDRRD-AQDAEA 73 (103)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHTT--TSCEEEEECCBCSSSCSBCSCEEEEESSSSH-HHHHHH
T ss_pred eEEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEEeCCCCCCCCeEEEEEECCHHH-HHHHHH
Confidence 45778898865 367889999999 8775 455555443 467999999987544 334443
No 89
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=61.04 E-value=16 Score=31.27 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=36.9
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
++.+.|-|++.. .+...|++.|+. |.++ .+..... |++.|.|.+ -..-..|+.
T Consensus 16 ~~~l~V~nLp~~---------~t~~~l~~~F~~--~G~v~~~~i~~~-----g~afV~f~~-~~~a~~Ai~ 69 (115)
T 3beg_B 16 ENRVVVSGLPPS---------GSWQDLKDHMRE--AGDVCYADVYRD-----GTGVVEFVR-KEDMTYAVR 69 (115)
T ss_dssp -CCEEEEECCSS---------CCTTHHHHHHGG--GSCEEEEEECTT-----SEEEEEESS-HHHHHHHHH
T ss_pred CcEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEecC-----CEEEEEECC-HHHHHHHHH
Confidence 366889999865 256789999999 7664 4444332 899999987 444555655
No 90
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=60.98 E-value=12 Score=30.88 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=37.4
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCCh
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDW 182 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw 182 (630)
+..+.|-|+|.. .+...|.+.|+. |.++ .+....++ .-+.|++.|.|.+.-
T Consensus 15 ~~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 68 (105)
T 1x5u_A 15 DATVYVGGLDEK---------VSEPLLWELFLQ--AGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 68 (105)
T ss_dssp TTEEEEECCCTT---------CCHHHHHHHHHT--TSCEEEEECCBCSSSCSBCSCEEEEESSHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEecCCCCcCCcEEEEEECCHH
Confidence 356778898865 367889999999 8775 56666554 347799999997743
No 91
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=60.84 E-value=13 Score=29.67 Aligned_cols=57 Identities=19% Similarity=0.342 Sum_probs=39.3
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~l 191 (630)
++.|-|+|.. .+...|++.|+. |.+. .++...++ ..+.|++.|.|.+.- .-..|+.+
T Consensus 8 ~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~a~~~ 67 (89)
T 3ucg_A 8 SIYVGNVDYG---------ATAEELEAHFHG--CGSVNRVTILCDKFSGHPKGFAYIEFSDKE-SVRTSLAL 67 (89)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGG--GCCEEEEEEEESCSSSSCCEEEEEEESSTH-HHHHHGGG
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--CCCEEEEEEEecCCCCCcceEEEEEECCHH-HHHHHHhc
Confidence 5678888764 367889999999 8764 55555553 346899999999754 33444433
No 92
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=60.39 E-value=12 Score=29.50 Aligned_cols=57 Identities=21% Similarity=0.423 Sum_probs=38.6
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
..+.|-|+|.. .+...|.+.|+. |.+. .+....++ ..++|++.|.|.+.-. -..|+.
T Consensus 2 ~~l~V~nlp~~---------~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~-a~~a~~ 61 (83)
T 3md1_A 2 FNLFVGDLNVN---------VDDETLRNAFKD--FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD-AQNAMD 61 (83)
T ss_dssp EEEEEECCCTT---------CCHHHHHHHHTT--STTEEEEEEEECTTTCCEEEEEEEEESCHHH-HHHHHH
T ss_pred eEEEEeCCCCC---------CCHHHHHHHHHh--cCCeeEEEEEEcCCCCCccceEEEEECCHHH-HHHHHH
Confidence 35678888765 367889999999 8774 45555553 3458999999986433 344443
No 93
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=60.35 E-value=13 Score=31.90 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=35.7
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC-CceeEEEEeCCC
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG-HSGFAVVEFYKD 181 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G-h~g~aVV~F~~d 181 (630)
.+.|-|++.. .+...|.+.|+. |.++ .+....+..| +.|++.|.|.+.
T Consensus 9 ~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~F~~~ 58 (116)
T 2fy1_A 9 KLFIGGLNRE---------TNEKMLKAVFGK--HGPISEVLLIKDRTSKSRGFAFITFENP 58 (116)
T ss_dssp EEEEECCTTT---------CCHHHHHHHHHT--SSCCSEEEEECSTTTTCCCEEEEECSSH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEEECCCCCcccEEEEEECCH
Confidence 5678888764 367889999999 8764 5666665543 569999999764
No 94
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=60.11 E-value=9.7 Score=37.14 Aligned_cols=69 Identities=23% Similarity=0.243 Sum_probs=46.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC-CceeEEEEeCCChhhhHHHHHH-Hhhhhhc
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIMF-EKSFEVD 198 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~l-ek~Fe~~ 198 (630)
..+.|-|++.. .+...|.+.|+. |.++ .|..+.+..| ++|++.|.|.+.-..-.-...| ...|-..
T Consensus 97 ~~l~v~nl~~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 165 (261)
T 3sde_A 97 AALTVKNLSPV---------VSNELLEQAFSQ--FGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLT 165 (261)
T ss_dssp SEEEEESCCTT---------CCHHHHHHHHGG--GSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESS
T ss_pred CcccccCCCCC---------CCHHHHHHHHHh--cCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEec
Confidence 36778898764 367889999999 8775 6777777665 5899999998765543333333 3334433
Q ss_pred CCC
Q 038527 199 HHG 201 (630)
Q Consensus 199 ~~G 201 (630)
+.|
T Consensus 166 ~~~ 168 (261)
T 3sde_A 166 TTP 168 (261)
T ss_dssp SSC
T ss_pred CCC
Confidence 334
No 95
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=60.01 E-value=11 Score=31.85 Aligned_cols=49 Identities=12% Similarity=0.365 Sum_probs=36.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCC
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKD 181 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~d 181 (630)
.++.|-|++.. .+...|++.|+. |.++ .++...++ ..+.|++.|.|...
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 67 (115)
T 2dgo_A 16 FHVFVGDLSPE---------ITTEDIKAAFAP--FGRISDARVVKDMATGKSKGYGFVSFFNK 67 (115)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEEcCCCCCcceEEEEEECCH
Confidence 45678898764 367889999999 8764 56666553 34679999999764
No 96
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=59.98 E-value=7.2 Score=32.44 Aligned_cols=59 Identities=17% Similarity=0.297 Sum_probs=40.6
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCC---CCCceeEEEEeCCChhhhHHHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSR---RGHSGFAVVEFYKDWAGFKNAIMFE 192 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~---~Gh~g~aVV~F~~dw~Gf~nA~~le 192 (630)
.++.|-|++.. .+...|++.|+. |....++...+. .-+.|++.|.|.+ ...-..|+.|+
T Consensus 20 ~~l~V~nLp~~---------~t~~~l~~~F~~--~Gi~~v~i~~~~~~~g~~~g~afV~f~~-~~~a~~Ai~l~ 81 (100)
T 2j76_E 20 YTAFLGNLPYD---------VTEESIKEFFRG--LNISAVRLPREPSNPERLKGFGYAEFED-LDSLLSALSLN 81 (100)
T ss_dssp CEEEESCCSSC---------CSSSHHHHHSCS--SCEEEEECSCCTTTTCCCCSCEEEEECC-HHHHHHHHHTT
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEecCCcCCccCeEEEEEECC-HHHHHHHHhcC
Confidence 45667888764 356789999999 656667766654 3368999999974 44455555443
No 97
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.75 E-value=4.7 Score=26.62 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=18.2
Q ss_pred cCCeeeccCCCCCCccccch-HHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLY-KELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~-~~LLqHA~ 63 (630)
...+|.|+.|+.. |..- ..|..|-.
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~~L~~H~~ 31 (37)
T 2elp_A 6 SGRAMKCPYCDFY---FMKNGSDLQRHIW 31 (37)
T ss_dssp CCCCEECSSSSCE---ECSSCHHHHHHHH
T ss_pred CCCCeECCCCChh---hccCHHHHHHHHH
Confidence 5678999999744 5555 77888843
No 98
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.69 E-value=13 Score=30.39 Aligned_cols=57 Identities=19% Similarity=0.384 Sum_probs=39.4
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~l 191 (630)
.+.|-|+|.. .+...|++.|+. |.++ .++....+ ..+.|++.|.|.+. ..-..|+.+
T Consensus 12 ~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~a~~A~~~ 71 (99)
T 2dgs_A 12 KIFVGGIPHN---------CGETELREYFKK--FGVVTEVVMIYDAEKQRPRGFGFITFEDE-QSVDQAVNM 71 (99)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHSS--SSCEEEEEECCCTTTCSCCSEEEEEESSH-HHHHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEeCCCCCCCCceEEEEECCH-HHHHHHHHh
Confidence 4667888764 367889999999 8775 55555553 33789999999663 344555544
No 99
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=59.56 E-value=4.9 Score=25.92 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=19.3
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
++.+|.|+.|+.. |..-..|..|-..
T Consensus 4 ~~k~~~C~~C~k~---f~~~~~L~~H~~~ 29 (35)
T 2elx_A 4 GSSGYVCALCLKK---FVSSIRLRSHIRE 29 (35)
T ss_dssp CCCSEECSSSCCE---ESSHHHHHHHHHH
T ss_pred CCCCeECCCCcch---hCCHHHHHHHHHH
Confidence 4678999999754 6667788888543
No 100
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.47 E-value=6.6 Score=33.54 Aligned_cols=59 Identities=25% Similarity=0.289 Sum_probs=37.6
Q ss_pred ceEEEeccccccC--CCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChh
Q 038527 122 WVGIVANIKTQRG--EDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWA 183 (630)
Q Consensus 122 wmgII~Ni~~e~~--~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~ 183 (630)
.+++|.|+..... .|..+.......|++.|+. |.++.-..++.. ...|++.|.|.+.-.
T Consensus 16 ~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~--~G~v~~v~i~~~-~~~G~afV~f~~~~~ 76 (112)
T 2dit_A 16 RVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK--FGQIRKLLLFDR-HPDGVASVSFRDPEE 76 (112)
T ss_dssp CEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG--TSCCSEEEEETT-CTTCEEEEECSCHHH
T ss_pred eEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc--cCCEeEEEEecC-CCCEEEEEEECCHHH
Confidence 4688889855311 1222333345789999999 877644344433 478999999986544
No 101
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=59.40 E-value=12 Score=30.84 Aligned_cols=56 Identities=25% Similarity=0.286 Sum_probs=38.4
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
..+.|-|+|.. .+...|.+.|+. |.++ .++...++ ..+.|++.|.|.+.-. -..|+
T Consensus 13 ~~l~V~nLp~~---------~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-A~~A~ 71 (102)
T 2cqb_A 13 RVLYVGGLAEE---------VDDKVLHAAFIP--FGDITDIQIPLDYETEKHRGFAFVEFELAED-AAAAI 71 (102)
T ss_dssp SCEEEESCCSS---------CCHHHHHHHHTT--TSCCCCEECCCCSSSCCCSSEEEECCSSHHH-HHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHhhc--cCCEEEEEEEecCCCCCcceEEEEEECCHHH-HHHHH
Confidence 45678898865 357889999999 8775 55555543 3478999999986433 33444
No 102
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.33 E-value=11 Score=30.54 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=35.5
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC--CCceeEEEEeCCC
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR--GHSGFAVVEFYKD 181 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~--Gh~g~aVV~F~~d 181 (630)
.+.|-|+|.. .+...|++.|+. |.++ .++...++. .++|++.|.|.+.
T Consensus 18 ~l~V~nlp~~---------~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~ 68 (94)
T 2e5h_A 18 TVYVSNLPFS---------LTNNDLYRIFSK--YGKVVKVTIMKDKDTRKSKGVAFILFLDK 68 (94)
T ss_dssp SEEEESCCTT---------SCHHHHHHHTTT--TSCEEEEEECCCSSSCCCTTCEEEEESCH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHh--cCCeEEEEEEeCCCCCCcccEEEEEECCH
Confidence 5678898864 367889999999 8775 555555543 3679999999763
No 103
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=59.19 E-value=11 Score=32.29 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=41.9
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~l 191 (630)
+.++.|-|++.. .+...|.+.|+. |.++ .++..+++ ..+.|++.|.|.+.-. -..|+.|
T Consensus 36 ~~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~l 97 (124)
T 2jwn_A 36 KRSVYVGNVDYG---------STAQDLEAHFSS--CGSINRITILCDKFSGHPKGYAYIEFAERNS-VDAAVAM 97 (124)
T ss_dssp HTEEEEEEECTT---------CCHHHHHHHHHT--TSCEEEEEEEEECTTSSCEEEEEEEESSHHH-HHHHHTT
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEEecCCCCCcccEEEEEECCHHH-HHHHHhc
Confidence 457788898864 367889999999 8775 56666653 3468999999977543 3445543
No 104
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=58.67 E-value=14 Score=30.98 Aligned_cols=57 Identities=19% Similarity=0.387 Sum_probs=38.9
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.++.|-|+|.. .+...|.+.|+. |.++ .++...++ ..+.|++.|.|.+.-. -..|+.
T Consensus 27 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-A~~Ai~ 86 (110)
T 1oo0_B 27 WILFVTSIHEE---------AQEDEIQEKFCD--YGEIKNIHLNLDRRTGFSKGYALVEYETHKQ-ALAAKE 86 (110)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHHGG--GSCEEEEECCBCTTTSSBCSEEEEEESSHHH-HHHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEEecCCCCCcceEEEEEECCHHH-HHHHHH
Confidence 45778898864 367889999999 8775 45554443 3467999999986443 344443
No 105
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=58.66 E-value=9.6 Score=29.48 Aligned_cols=55 Identities=16% Similarity=0.320 Sum_probs=37.7
Q ss_pred EEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHH
Q 038527 124 GIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 124 gII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
+.|-|+|.. .+...|++.|+. |.+. .+....++ .-++|++.|.|.+.- .-..|+.
T Consensus 2 l~v~nLp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~Ai~ 59 (75)
T 1iqt_A 2 IFVGGLSPD---------TPEEKIREYFGG--FGEVESIELPMDNKTNKRRGFCFITFKEEE-PVKKIME 59 (75)
T ss_dssp EEESCCCSS---------CCHHHHHHHHHH--HSCCSEECCCCSCCCSSSCCCEEEECSSSH-HHHHHHT
T ss_pred EEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEecCCCCCcCCEEEEEECCHH-HHHHHHH
Confidence 456777764 367889999999 8775 45554443 346899999998654 3455554
No 106
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=58.52 E-value=14 Score=29.32 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=34.2
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCCh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDW 182 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw 182 (630)
++.|-|+|.. ..+. ...+...|++.|+. |.++ .+........+.|++.|.|.+.-
T Consensus 3 ~l~V~nLp~~-~~~~--~~~t~~~l~~~F~~--~G~i~~v~i~~~~g~~~g~afV~f~~~~ 58 (81)
T 2krb_A 3 VIVVDNVPQV-GPDR--LEKLKNVIHKIFSK--FGKITNDFYPEEDGKTKGYIFLEYASPA 58 (81)
T ss_dssp EEEEESCCCC-CTTT--HHHHHHHHHHHHHT--TCCEEEEECCCBTTBCCCEEEEEESSHH
T ss_pred EEEEeCCCCC-cHHH--HHHHHHHHHHHHhh--cCCeEEEEecCCCCcEeEEEEEEECCHH
Confidence 4678888764 1110 01134789999999 8876 34433222346799999998643
No 107
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.52 E-value=9.8 Score=31.60 Aligned_cols=58 Identities=14% Similarity=0.195 Sum_probs=40.8
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~l 191 (630)
..+.|-|+|.. .+...|++.|+. |.++ .++...++ .-+.|++.|.|.+. ..-..|+..
T Consensus 17 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~a~~~ 77 (105)
T 2dh8_A 17 GKLFVGGLDWS---------TTQETLRSYFSQ--YGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLAS 77 (105)
T ss_dssp SEECCBSCCTT---------CCHHHHHHHHHT--TSCEEEEEEEECSSSCCEEEEEEEEESST-THHHHHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEeeCCCCCCcceEEEEEECCH-HHHHHHHHh
Confidence 45667888764 367889999999 8775 55666653 34679999999864 444555554
No 108
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=58.42 E-value=10 Score=37.03 Aligned_cols=58 Identities=24% Similarity=0.283 Sum_probs=43.1
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~l 191 (630)
-++.|-|+|.. .+...|.+.|+. |.++ .++...+..|..|+|.|.|.+ -..-..|+.+
T Consensus 42 ~~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~g~afV~f~~-~~~A~~A~~~ 100 (292)
T 2ghp_A 42 TTVLVKNLPKS---------YNQNKVYKYFKH--CGPIIHVDVADSLKKNFRFARIEFAR-YDGALAAITK 100 (292)
T ss_dssp CEEEEEEECTT---------CCHHHHHHHHGG--GSCEEEEEEEECTTSSSEEEEEEESS-HHHHHHHHTT
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEECCCCCcEEEEEEECC-HHHHHHHHHh
Confidence 35778899875 367889999999 8764 677777788889999999985 3344455543
No 109
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=58.32 E-value=12 Score=31.59 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=37.6
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
+..+.|-|+|.. .+..+|++.|+. |.++ .+.+..+ |++.|.|.+ ...-..|+.
T Consensus 15 ~~~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~~~i~~~-----g~afV~f~~-~~~a~~Ai~ 68 (108)
T 1x4c_A 15 ENRVVVSGLPPS---------GSWQDLKDHMRE--AGDVCYADVYRD-----GTGVVEFVR-KEDMTYAVR 68 (108)
T ss_dssp CCEEEEESCCSS---------CCHHHHHHHHGG--GSCEEEEEEETT-----TEEEEEESS-HHHHHHHHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHh--cCCEeEEEEecC-----CEEEEEECC-HHHHHHHHH
Confidence 457889999865 367899999999 7664 4444443 899999977 334455554
No 110
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=58.27 E-value=15 Score=31.02 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=36.1
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCC
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKD 181 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~d 181 (630)
-.+.|-|++.. .+...|++.|+. |.++ .++.+.++ .-+.|++.|.|.+.
T Consensus 18 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~ 69 (116)
T 2cqd_A 18 TKIFVGGLPYH---------TTDASLRKYFEG--FGDIEEAVVITDRQTGKSRGYGFVTMADR 69 (116)
T ss_dssp SEEEEECCCSS---------CCHHHHHHHHHT--TSCEEEEEESCCSSSCCCCSEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--CCCeeEEEEEEcCCCCccceEEEEEECCH
Confidence 35678898865 367889999999 8775 55565553 34679999999753
No 111
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=58.24 E-value=6.7 Score=32.80 Aligned_cols=62 Identities=18% Similarity=0.060 Sum_probs=41.0
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC-C-CceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR-G-HSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~-G-h~g~aVV~F~~dw~Gf~nA~~ 190 (630)
++.|-|+|.- .. .....+...|++.|+. |.++ .++..+++. | +.|++.|.|.+.-. -..|+.
T Consensus 8 ~vfV~nLp~v-~~--~~~~~~~~~L~~~F~~--~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~-A~~Ai~ 72 (100)
T 3ns6_A 8 YIVVNGAPVI-PS--AKVPVLKKALTSLFSK--AGKVVNMEFPIDEATGKTKGFLFVECGSMND-AKKIIK 72 (100)
T ss_dssp EEEEESCCCC-BG--GGHHHHHHHHHHHHHT--TSCEEEEECCEETTTTEECSEEEEEESSHHH-HHHHHH
T ss_pred EEEEeCCCcC-Ch--HHHHHHHHHHHHHHHh--cCCEeEEEEEEcCCCCccceEEEEEECCHHH-HHHHHH
Confidence 5788899872 10 1112356889999999 8775 566666664 3 67999999986433 344443
No 112
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=58.23 E-value=13 Score=31.12 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=36.6
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCCh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDW 182 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw 182 (630)
.+.|-|+|.. .+...|++.|+. |.++ .++...++ .-+.|+|.|.|.+.-
T Consensus 21 ~lfV~nLp~~---------~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~kG~afV~f~~~~ 72 (99)
T 4fxv_A 21 NLIVNYLPQN---------MTQDELRSLFSS--IGEVESAKLIRDKVAGHSLGYGFVNYVTAK 72 (99)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHT--TSCEEEEEEEECSSSCCEEEEEEEEESSHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEeEeeecCCCCcccccEEEEECCHH
Confidence 4678899875 367899999999 8775 56666554 346799999998643
No 113
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=58.15 E-value=8.6 Score=33.16 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=33.3
Q ss_pred EeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCCh
Q 038527 126 VANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDW 182 (630)
Q Consensus 126 I~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw 182 (630)
|-|++.. .+...|++.|.. |.|+.-..+.- |+||+.|+|.+.-
T Consensus 12 VgNL~~~---------~te~~L~~lF~q--~G~V~~~~l~~---~kGfaFVey~~~~ 54 (89)
T 2wbr_A 12 LKNLTAQ---------IDGPTLRTLCMQ--HGPLVSFHPYL---NQGIALCKYTTRE 54 (89)
T ss_dssp EECCCTT---------CCCHHHHHHHHH--HSCEEEEEEET---TTTEEEEEESSHH
T ss_pred EeCCCcc---------CCHHHHHHHHHh--hCCEEEEEEcC---CCcEEEEEECCHH
Confidence 6787664 356889999999 99976555533 7899999998753
No 114
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=58.06 E-value=5.4 Score=24.39 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=17.4
Q ss_pred CeeeccCCCCCCccccchHHHHhhhh
Q 038527 38 TAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.+|.|+.|+.. |.....|..|-.
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~~ 24 (28)
T 2kvf_A 2 RPYSCSVCGKR---FSLKHQMETHYR 24 (28)
T ss_dssp CSEECSSSCCE---ESCHHHHHHHHT
T ss_pred cCccCCCCCcc---cCCHHHHHHHHH
Confidence 47999999744 667788888854
No 115
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=57.83 E-value=5.4 Score=24.34 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=16.3
Q ss_pred eeeccCCCCCCccccchHHHHhhhh
Q 038527 39 AYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 39 ~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
+|.|+.|+.. |..-..|..|-.
T Consensus 2 ~~~C~~C~~~---f~~~~~l~~H~~ 23 (29)
T 1ard_A 2 SFVCEVCTRA---FARQEHLKRHYR 23 (29)
T ss_dssp CCBCTTTCCB---CSSHHHHHHHHH
T ss_pred CeECCCCCcc---cCCHHHHHHHHH
Confidence 6899999754 666777777744
No 116
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=57.61 E-value=5.5 Score=25.84 Aligned_cols=26 Identities=12% Similarity=0.222 Sum_probs=19.7
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
...+|.|+.|+.. |.....|..|-..
T Consensus 4 ~~k~~~C~~C~k~---f~~~~~l~~H~~~ 29 (35)
T 1srk_A 4 GKRPFVCRICLSA---FTTKANCARHLKV 29 (35)
T ss_dssp CCSCEECSSSCCE---ESSHHHHHHHHGG
T ss_pred CCcCeeCCCCCcc---cCCHHHHHHHHHH
Confidence 4678999999744 6677888888544
No 117
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=57.59 E-value=15 Score=30.14 Aligned_cols=57 Identities=26% Similarity=0.376 Sum_probs=38.5
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHHH-HHhh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM-FEKS 194 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~-lek~ 194 (630)
.+.|-|+|.. .+...|++.|+. |.++ .+....+ +.|++.|.|.+.- .-..|+. |+.+
T Consensus 2 ~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~---~~g~afV~f~~~~-~a~~A~~~l~g~ 60 (101)
T 2hvz_A 2 KVYVGNLGTG---------AGKGELERAFSY--YGPLRTVWIARN---PPGFAFVEFEDPR-DAEDAVRGLDGK 60 (101)
T ss_dssp EEEEECCCSS---------CSHHHHHHHHHH--HCCCSEEEEESS---SSSEEEEECSSHH-HHHHHHHHHHHS
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEeeC---CCCEEEEEECCHH-HHHHHHHHHCCC
Confidence 3567788764 367889999999 8775 4444444 8899999997644 3455554 4443
No 118
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.46 E-value=5.6 Score=26.08 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=18.8
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
+..+|.|+.|+.. |.....|..|-.
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~~ 30 (36)
T 2elq_A 6 SGKPFKCSLCEYA---TRSKSNLKAHMN 30 (36)
T ss_dssp CCCSEECSSSSCE---ESCHHHHHHHHH
T ss_pred CCCCccCCCCCch---hCCHHHHHHHHH
Confidence 4578999999744 667777888854
No 119
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=57.41 E-value=11 Score=31.14 Aligned_cols=50 Identities=18% Similarity=0.456 Sum_probs=36.6
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCCh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDW 182 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw 182 (630)
.++.|-|++.. .+...|.+.|+. |.++ .+....++ ..+.|+|.|.|.+.-
T Consensus 24 ~~l~V~nlp~~---------~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 76 (106)
T 1p27_B 24 WILFVTGVHEE---------ATEEDIHDKFAE--YGEIKNIHLNLDRRTGYLKGYTLVEYETYK 76 (106)
T ss_dssp EEEEEECCCTT---------CCHHHHHHHHGG--GSCEEEEEEEECTTTSSEEEEEEEEESCHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHhc--cCCeEEEEEEecCCCCceeeEEEEEECCHH
Confidence 56778898875 367889999999 8775 55555544 345799999998643
No 120
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=57.36 E-value=14 Score=31.63 Aligned_cols=56 Identities=18% Similarity=0.430 Sum_probs=39.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
.++.|-|++.. .+...|.+.|+. |.++ .+....++ ..+.|+|.|.|.+.-. -..|+
T Consensus 23 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-a~~A~ 81 (126)
T 3ex7_B 23 WILFVTGVHEE---------ATEEDIHDKFAE--YGEIKNIHLNLDRRTGYLKGYTLVEYETYKE-AQAAM 81 (126)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHHHT--TSCEEEEECCBCTTTSSBCSCEEEEESSHHH-HHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEecCCCCccceEEEEEECCHHH-HHHHH
Confidence 46788999864 367889999999 8775 45555553 3358999999976543 34444
No 121
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=57.25 E-value=4.2 Score=25.14 Aligned_cols=22 Identities=32% Similarity=0.724 Sum_probs=16.6
Q ss_pred CeeeccCCCCCCccccchHHHHhhh
Q 038527 38 TAYRCPFCRGKKETDYLYKELLQHA 62 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y~~~~LLqHA 62 (630)
.+|.|+.|+.. |..-..|..|-
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~ 23 (27)
T 2kvg_A 2 APYRCPLCRAG---CPSLASMQAHM 23 (27)
T ss_dssp CTEEETTTTEE---ESCHHHHHHHH
T ss_pred cCcCCCCCCcc---cCCHHHHHHHH
Confidence 57999999743 66677788884
No 122
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=56.95 E-value=14 Score=34.47 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=37.9
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC-CceeEEEEeCCCh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG-HSGFAVVEFYKDW 182 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G-h~g~aVV~F~~dw 182 (630)
.++.|-|++.. .+...|++.|+. |.++ .|...++..| +.|+|.|.|...-
T Consensus 89 ~~l~V~nLp~~---------~te~~L~~~F~~--~G~I~~v~i~~d~~g~~kG~afV~F~~~~ 140 (177)
T 2f3j_A 89 AKLLVSNLDFG---------VSDADIQELFAE--FGTLKKAAVDYDRSGRSLGTADVHFERRA 140 (177)
T ss_dssp EEEEEECCCSC---------CCHHHHHHHHHH--TSCCSEEEECCCTTSSCSCCEEEEESCHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEECCCCCEeeEEEEEeCCHH
Confidence 47778888764 367889999999 8764 6666666644 5799999998643
No 123
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=56.73 E-value=14 Score=32.63 Aligned_cols=50 Identities=24% Similarity=0.384 Sum_probs=37.5
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC----CceeEEEEeCCChh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG----HSGFAVVEFYKDWA 183 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G----h~g~aVV~F~~dw~ 183 (630)
.+.|-|+|.. .+...|.+.|+. |.++ .++...++.+ +.|++.|.|.+.-.
T Consensus 5 ~l~V~nLp~~---------~te~~l~~~F~~--~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~ 59 (175)
T 3nmr_A 5 KMFVGQVPRT---------WSEKDLRELFEQ--YGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKA 59 (175)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHT--TSCEEEEEEEEECSSSSCEEEEEEEEEESSHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--CCCEEEEEEEecCCCCCCCcceEEEEEECCHHH
Confidence 4667888765 367889999999 8775 5666666654 68999999987644
No 124
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=56.72 E-value=14 Score=29.22 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=35.7
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWA 183 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~ 183 (630)
..+.|-|+|.. .+...|.+.|+. |.+. .+....++ ..+.|++.|.|.+.-.
T Consensus 8 ~~l~V~nl~~~---------~~~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 61 (85)
T 3mdf_A 8 RVLYVGGLAEE---------VDDKVLHAAFIP--FGDITDIQIPLDYETEKHRGFAFVEFELAED 61 (85)
T ss_dssp SEEEEECCCTT---------CCHHHHHHHHGG--GSCEEEEECCEETTTTEECSEEEEEESSHHH
T ss_pred CEEEEECCCCC---------CCHHHHHHHHhc--cCCEEEEEEEECCCCCccccEEEEEECCHHH
Confidence 35678888764 356889999999 8764 45554442 2368999999987543
No 125
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.67 E-value=13 Score=29.91 Aligned_cols=50 Identities=22% Similarity=0.319 Sum_probs=36.4
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC--CCceeEEEEeCCCh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR--GHSGFAVVEFYKDW 182 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~--Gh~g~aVV~F~~dw 182 (630)
.++.|-|+|.. .+...|.+.|+. |.++ .+...+++. -++|++.|.|.+.-
T Consensus 16 ~~l~v~nlp~~---------~t~~~l~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~ 68 (95)
T 2cqc_A 16 CCLGVFGLSLY---------TTERDLREVFSK--YGPIADVSIVYDQQSRRSRGFAFVYFENVD 68 (95)
T ss_dssp GCEEEESCCSS---------CCHHHHHHHHHT--TSCEEEEEEEECSSSSSEEEEEEEEESSHH
T ss_pred CEEEEECCCCC---------CCHHHHHHHHHh--cCCeeEEEEEEcCCCCCcccEEEEEECCHH
Confidence 35668898864 367789999999 8775 555655543 46799999998643
No 126
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=56.61 E-value=9.2 Score=30.78 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=33.0
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCCh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDW 182 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw 182 (630)
.+.|-|+|.. .+...|++.|+. |.++ .++... .+.|++.|.|.+.-
T Consensus 7 ~l~V~nLp~~---------~te~~l~~~F~~--~G~i~~v~i~~---~~~g~afV~f~~~~ 53 (88)
T 1wf0_A 7 GVFVGRCTGD---------MTEDELREFFSQ--YGDVMDVFIPK---PFRAFAFVTFADDQ 53 (88)
T ss_dssp EEEEESCCSS---------SCHHHHHHHSTT--TSCCCEEECCS---SCCSCCEEECSCHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHH--cCCeeEEEEec---CCCCEEEEEECCHH
Confidence 3567788764 367889999999 8775 333332 37899999999844
No 127
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=55.95 E-value=14 Score=32.21 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=38.4
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC-CceeEEEEeCCChhhhHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG-HSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~ 189 (630)
++.|-|+|.. .+...|.+.|+. |.+. .++...++.| +.|+|.|.|.+.-. -..|+
T Consensus 2 ~l~V~nlp~~---------~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~g~afV~f~~~~~-a~~A~ 58 (166)
T 3md3_A 2 VLYVGNLDKA---------ITEDILKQYFQV--GGPIANIKIMIDKNNKNVNYAFVEYHQSHD-ANIAL 58 (166)
T ss_dssp EEEEEEEETT---------CCHHHHHHHHGG--GSCEEEEEEECCCC-CCEEEEEEEESSHHH-HHHHH
T ss_pred EEEECCCCCc---------CCHHHHHHHHHh--cCCeEEEEEEECCCCCCCCEEEEEeCCHHH-HHHHH
Confidence 3567888765 367889999999 8775 4666666644 67999999976433 34444
No 128
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=55.93 E-value=13 Score=30.64 Aligned_cols=48 Identities=21% Similarity=0.045 Sum_probs=36.2
Q ss_pred eEEEeccccccCCCCcccccChhhHH----HHHHhCCCCCc-ccccccCCCCCceeEEEEeCCCh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLR----DEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDW 182 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~----~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw 182 (630)
.+.|-|+|.. .+...|+ +.|+. |.++ .++...++.+ .|++.|.|.+.-
T Consensus 11 ~l~V~nL~~~---------~~~~~l~~~l~~~F~~--~G~v~~v~i~~~~~~-rg~afV~f~~~~ 63 (96)
T 2dgx_A 11 DVQVSNIDYR---------LSRKELQQLLQEAFAR--HGKVKSVELSPHTDY-QLKAVVQMENLQ 63 (96)
T ss_dssp EEEEESCCTT---------SCHHHHHHHHHHHHHH--HSCEEEEEECSCCST-TCCEEEEESSHH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHHhccc--cCcEEEEEEEeCCCC-CeEEEEEECCHH
Confidence 4678888764 3567787 99999 8764 6677767666 899999997643
No 129
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=55.76 E-value=17 Score=31.39 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=36.5
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCCh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDW 182 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw 182 (630)
..+.|-|+|.. .+...|++.|+. |.++ .++...++ ..++|++.|.|.+.-
T Consensus 64 ~~l~v~nlp~~---------~~~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 116 (140)
T 2ku7_A 64 RVLYVGGLAEE---------VDDKVLHAAFIP--FGDITDIQIPLDYETEKHRGFAFVEFELAE 116 (140)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHGG--GSCEEEEECCCCTTTCCCCSEEEEEESCHH
T ss_pred cEEEEEeCCCC---------CCHHHHHHHHHh--cCCEEEEEEeecCCCCCcCcEEEEEECCHH
Confidence 45678898864 356889999999 8775 55555543 346899999998643
No 130
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.76 E-value=15 Score=30.05 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=39.1
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc--ccccccCC--CCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL--KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~--kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
-.+.|-|+|.. .+...|++.|+. |.++ .++.+.++ ..+.|++.|.|.+-- .-..|+.
T Consensus 10 ~~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~-~a~~A~~ 70 (99)
T 2div_A 10 ASLWMGDLEPY---------MDENFISRAFAT--MGETVMSVKIIRNRLTGIPAGYCFVEFADLA-TAEKCLH 70 (99)
T ss_dssp SEEEECSCCTT---------CCHHHHHHHHHH--TTCCCCEEEEEECSSSCCEEEEEEEECSCHH-HHHHHHH
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHH--hCCcceEEEEeecCCCCCcCCEEEEEeCCHH-HHHHHHH
Confidence 34667888764 367889999999 8763 56666654 346799999997543 3344443
No 131
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=55.21 E-value=5.9 Score=24.24 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=16.5
Q ss_pred eeeccCCCCCCccccchHHHHhhhh
Q 038527 39 AYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 39 ~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
+|.|+.|+.. |..-..|..|-.
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~~ 23 (29)
T 1rik_A 2 KFACPECPKR---FMRSDHLTLHIL 23 (29)
T ss_dssp CEECSSSSCE---ESCSHHHHHHHT
T ss_pred CccCCCCCch---hCCHHHHHHHHH
Confidence 6899999744 666777888854
No 132
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=55.15 E-value=9.4 Score=30.71 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=35.6
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCCh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDW 182 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw 182 (630)
.+.|-|+|.. .+...|++.|+. |.+. .+....++ ..+.|++.|.|.+.-
T Consensus 3 ~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 54 (90)
T 2ki2_A 3 NIYVGNLVYS---------ATSEQVKELFSQ--FGKVFNVKLIYDRETKKPKGFGFVEMQEES 54 (90)
T ss_dssp EEEEEEECTT---------SSHHHHTTTHHH--HTCCSEEEECCCSSSCCCCEEEEEEECTTH
T ss_pred EEEECCCCCC---------CCHHHHHHHHHh--cCCEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 3567787764 356789999999 8665 56666554 346899999998765
No 133
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=55.00 E-value=97 Score=26.24 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=30.1
Q ss_pred HHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 263 TRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEK 342 (630)
Q Consensus 263 ~n~I~~kn~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k 342 (630)
...+......+...+....+...+...+++++..|... +.+.+.....|.+++.+|+....
T Consensus 20 eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------------------l~eaEe~~~~L~~~K~eLE~~l~ 80 (89)
T 3bas_A 20 LKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------------------MKQLEDKVEELLSKNYHLENEVA 80 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444444455555555444443 34444444555555555555555
Q ss_pred HHHH
Q 038527 343 QLQY 346 (630)
Q Consensus 343 ~L~~ 346 (630)
+|..
T Consensus 81 el~~ 84 (89)
T 3bas_A 81 RLKK 84 (89)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 134
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=54.58 E-value=65 Score=26.78 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhh
Q 038527 310 QSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKL 358 (630)
Q Consensus 310 ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl 358 (630)
+.+-+.+++++.+|..|+..|.---..|..|+.+|..-......+|.=|
T Consensus 4 ~~~~e~~q~ll~EN~~LreAlkqsNq~mkeR~eeL~~wqekQkeErefl 52 (70)
T 3brv_B 4 QGAPETLQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFL 52 (70)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3456678999999999999999999999999999987665555555444
No 135
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.39 E-value=6.8 Score=25.63 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=19.3
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+.+|.|+.|+.. |..-..|..|-..
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~l~~H~~~ 31 (36)
T 2elv_A 6 SGLLYDCHICERK---FKNELDRDRHMLV 31 (36)
T ss_dssp CCCCEECSSSCCE---ESSHHHHHHHHTT
T ss_pred CCCCeECCCCCCc---cCCHHHHHHHHHH
Confidence 4578999999744 6677788888543
No 136
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=54.30 E-value=5.8 Score=24.00 Aligned_cols=22 Identities=27% Similarity=0.464 Sum_probs=15.4
Q ss_pred eeeccCCCCCCccccchHHHHhhhh
Q 038527 39 AYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 39 ~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
+|.|+.|+.. |.....|..|-.
T Consensus 2 ~~~C~~C~~~---f~~~~~l~~H~~ 23 (29)
T 2m0e_A 2 EHKCPHCDKK---FNQVGNLKAHLK 23 (29)
T ss_dssp CCCCSSCCCC---CCTTTHHHHHHH
T ss_pred CCcCCCCCcc---cCCHHHHHHHHH
Confidence 6899999854 555666777743
No 137
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.29 E-value=6.9 Score=26.66 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |.....|..|-..
T Consensus 7 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 33 (42)
T 2eos_A 7 GGEKPYPCEICGTR---FRHLQTLKSHLRI 33 (42)
T ss_dssp SSSCCBCCSSSCCC---BSSHHHHHHHTTT
T ss_pred CCCCCEECCCCCCc---cCCHHHHHHHHHh
Confidence 45678999999754 7777888888543
No 138
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=54.22 E-value=6.7 Score=23.92 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=17.1
Q ss_pred eeeccCCCCCCccccchHHHHhhhhc
Q 038527 39 AYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 39 ~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
+|.|+.|+.. |.....|..|...
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~~~ 24 (30)
T 1klr_A 2 TYQCQYCEFR---SADSSNLKTHIKT 24 (30)
T ss_dssp CCCCSSSSCC---CSCSHHHHHHHHH
T ss_pred CccCCCCCCc---cCCHHHHHHHHHH
Confidence 6899999754 6667788888543
No 139
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.16 E-value=5.3 Score=26.29 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=19.8
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |..-..|..|-..
T Consensus 5 ~~~k~~~C~~C~k~---f~~~~~l~~H~~~ 31 (37)
T 2elo_A 5 SSGRSYSCPVCEKS---FSEDRLIKSHIKT 31 (37)
T ss_dssp CCCCCCEETTTTEE---CSSHHHHHHHHHH
T ss_pred CCCCCcCCCCCCCc---cCCHHHHHHHHHH
Confidence 35678999999744 6677788888543
No 140
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=54.16 E-value=20 Score=34.04 Aligned_cols=66 Identities=9% Similarity=0.075 Sum_probs=44.0
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCC---cccccccCCCCCceeEEEEeCCChhhhHHHHHHHhhhhhcC
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNP---LKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKSFEVDH 199 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p---~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~lek~Fe~~~ 199 (630)
++.|-|+|.. .+...|++.|+. |.. ..++.+....+.+|+++|+|.+ ..-=..|+.-=+.+...+
T Consensus 125 ~l~v~NLp~~---------~t~~~L~~~F~~--~G~v~~~~v~~~~~~~~~~g~gfV~f~~-~~~A~~Ai~~lng~~~~g 192 (205)
T 3tyt_A 125 VLHFFNAPLE---------VTEENFFEICDE--LGVKRPTSVKVFSGKSERSSSGLLEWDS-KSDALETLGFLNHYQMKN 192 (205)
T ss_dssp EEEEEEECTT---------CCHHHHHHHHHH--HTCCCCSEEEECSCCSSSSEEEEEECSS-HHHHHHHHHHHTTCEECC
T ss_pred eEEEeCCCCC---------CCHHHHHHHHHh--cCCcceEEEEEEcCCCCCceEEEEEeCC-HHHHHHHHHHhCCCCccC
Confidence 4667898765 367889999999 766 4566665554567999999985 444455555444444443
Q ss_pred C
Q 038527 200 H 200 (630)
Q Consensus 200 ~ 200 (630)
.
T Consensus 193 ~ 193 (205)
T 3tyt_A 193 P 193 (205)
T ss_dssp S
T ss_pred C
Confidence 3
No 141
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=54.07 E-value=18 Score=28.74 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=39.9
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~l 191 (630)
-.+.|-|+|.. .+...|++.|+. |.++ .++...++ .-+.|++.|.|.+.-.- ..|+.+
T Consensus 12 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a-~~A~~~ 72 (87)
T 3s7r_A 12 GKMFVGGLSWD---------TSKKDLKDYFTK--FGEVVDCTIKMDPNTGRSRGFGFILFKDAASV-EKVLDQ 72 (87)
T ss_dssp TEEEEECCCTT---------CCHHHHHHHHTT--TSCEEEEEEEECTTTCCEEEEEEEEESSTHHH-HHHHHS
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--CCCEEEEEEeecCCCCccccEEEEEECCHHHH-HHHHHh
Confidence 45778898864 367889999999 8774 56555554 33579999999865443 445443
No 142
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=53.65 E-value=14 Score=31.47 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=38.8
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC--CCceeEEEEeCCChhhhHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR--GHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~--Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
-.+.|-|+|.. .+...|.+.|+. |.++ .++...++. .+.|+|.|.|.+.-. -..|+
T Consensus 27 ~~l~V~nLp~~---------~te~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~-A~~Ai 85 (108)
T 2jrs_A 27 MRLYVGSLHFN---------ITEDMLRGIFEP--FGRIESIQLMMDSETGRSKGYGFITFSDSEC-AKKAL 85 (108)
T ss_dssp EEEEEECCCSS---------CCHHHHHHHHTT--TSCEEEEEEEEETTTTEEEEEEEEEESCHHH-HHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEEcCCCCccceEEEEEECCHHH-HHHHH
Confidence 45678898764 367889999999 8775 555555533 457999999986433 34444
No 143
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.60 E-value=6.4 Score=26.72 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=19.8
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.++.+|.|+.|+.. |.....|..|-.
T Consensus 7 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 32 (42)
T 2en2_A 7 GGEKPYKCETCGAR---FVQVAHLRAHVL 32 (42)
T ss_dssp CSSCSEECTTTCCE---ESSHHHHHHHTH
T ss_pred CCCCCEeCCCcChh---hCCHHHHHHHHH
Confidence 46778999999754 667778888854
No 144
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=53.40 E-value=22 Score=31.36 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=39.4
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhh
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAG 184 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~G 184 (630)
+..+.|-|+|.. .+...|.+.|+. |.+. .+....++ .-+.|++.|.|.+.-..
T Consensus 94 ~~~l~v~nlp~~---------~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A 149 (172)
T 2g4b_A 94 AHKLFIGGLPNY---------LNDDQVKELLTS--FGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 149 (172)
T ss_dssp TTCEEEECCCTT---------CCHHHHHHHHHT--TSCEEEEEEEECTTTCSEEEEEEEEESSTTHH
T ss_pred CCEEEEEcCCCc---------CCHHHHHHHHHh--cCCceEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 678889999875 257889999999 8775 45555553 33579999999875543
No 145
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.23 E-value=7.1 Score=26.05 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=17.8
Q ss_pred cCCeeeccCCCCCCccccchHHHHhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQH 61 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqH 61 (630)
.+.+|.|+.|+.. |..-..|..|
T Consensus 6 ~~k~~~C~~C~k~---f~~~~~L~~H 28 (37)
T 2elm_A 6 SGHLYYCSQCHYS---SITKNCLKRH 28 (37)
T ss_dssp SSCEEECSSSSCE---EECHHHHHHH
T ss_pred CCcCeECCCCCcc---cCCHHHHHHH
Confidence 4678999999744 6667778888
No 146
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.10 E-value=10 Score=31.39 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=36.9
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWA 183 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~ 183 (630)
.++.|-|+|.. .+...|.+.|+. |.++ .+....++ ..+.|++.|.|.+.-.
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 69 (103)
T 2cq0_A 16 ATIRVTNLSED---------TRETDLQELFRP--FGSISRIYLAKDKTTGQSKGFAFISFHRRED 69 (103)
T ss_dssp EEEEEESCCTT---------CCHHHHHTTSTT--TCCEEEEEEEECSSSCSEEEEEEEEESSHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--CCCeEEEEEeecCCCCceeeEEEEEECCHHH
Confidence 45678898864 367889999999 8775 55555553 3468999999986433
No 147
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=52.91 E-value=18 Score=29.59 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=35.8
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
..+.|-|+|.. .+...|.+.|+. |.++.-..+. .+ .|+|.|.|.+. ..-..|+.
T Consensus 18 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~v~~v~~~--~~-~g~afV~f~~~-~~A~~A~~ 71 (97)
T 1why_A 18 TRLWVGGLGPN---------TSLAALAREFDR--FGSIRTIDHV--KG-DSFAYIQYESL-DAAQAACA 71 (97)
T ss_dssp SCEEEECCCSS---------CCHHHHHHHHHT--TSCEEEEEEC--SS-SCCEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCeeEEEEe--CC-CCEEEEEECCH-HHHHHHHH
Confidence 35678898864 367889999999 8875332222 22 68999999764 33344544
No 148
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=52.90 E-value=1.1e+02 Score=26.46 Aligned_cols=71 Identities=17% Similarity=0.162 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhchhHH----hhhHHhHHHhhhhhHHHhhcccccH-HHHHHHHHHHHHHHHHHhhhHHHHHhhHHH
Q 038527 388 EEKEKLRRKIIELQKGLDAK----QALELEIEQKRGTIQVMKHMREENV-EVQEKMDAIIKEIKEKEGEMDVVEALNQSL 462 (630)
Q Consensus 388 rEKe~~~~kil~LEkqLd~k----Q~LELEi~qlkg~L~vmKh~~~~d~-~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L 462 (630)
.+++.+.++..++|.++... -++|-+|..|+-+++++.. +. .....+...+..|++.+......|+-+.+|
T Consensus 16 ~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~----eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 16 LDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTED----EVEKYSESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777776443 3466777777777765544 22 244556666666666666666444444444
No 149
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=52.53 E-value=10 Score=32.52 Aligned_cols=61 Identities=20% Similarity=0.130 Sum_probs=40.2
Q ss_pred ceEEEecccccc-CCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC----CceeEEEEeCCChhh
Q 038527 122 WVGIVANIKTQR-GEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG----HSGFAVVEFYKDWAG 184 (630)
Q Consensus 122 wmgII~Ni~~e~-~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G----h~g~aVV~F~~dw~G 184 (630)
.+++|.|+.+.. ..+..+...--..|++.|+. |.++ .|++..+..+ ..|++.|.|.+.-+.
T Consensus 6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k--~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A 72 (105)
T 3v4m_A 6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK--YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDC 72 (105)
T ss_dssp SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT--TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHH
T ss_pred eEEEEECCCCHHHccChHHHHHHHHHHHHHHHc--cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHH
Confidence 368899987741 12322333344788999999 8885 5555555544 369999999986544
No 150
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=52.45 E-value=6.8 Score=24.14 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=15.9
Q ss_pred eeeccCCCCCCccccchHHHHhh
Q 038527 39 AYRCPFCRGKKETDYLYKELLQH 61 (630)
Q Consensus 39 ~~~CP~C~~kkK~~y~~~~LLqH 61 (630)
+|.|+.|+.. |.....|..|
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H 21 (30)
T 1paa_A 2 AYACGLCNRA---FTRRDLLIRH 21 (30)
T ss_dssp CSBCTTTCCB---CSSSHHHHHH
T ss_pred CcCCcccCcc---cCChHHHHHH
Confidence 6899999744 6677788888
No 151
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.45 E-value=16 Score=30.22 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=39.2
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
-.+.|-|+|.. .+...|.+.|+. |.++ .++...++ .-+.|++.|.|.+. ..-..|+.
T Consensus 16 ~~l~v~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~ 75 (103)
T 2cqg_A 16 SDLIVLGLPWK---------TTEQDLKEYFST--FGEVLMVQVKKDLKTGHSKGFGFVRFTEY-ETQVKVMS 75 (103)
T ss_dssp CCEEEESCCSS---------CCHHHHHHHHGG--GSCEEEEEEEECSSSCSEEEEEEEEESSH-HHHHHHHH
T ss_pred CEEEEEcCCCc---------CCHHHHHHHHHh--cCCeEEEEEEecCCCCCccceEEEEECCH-HHHHHHHH
Confidence 34678898764 357889999999 8775 56666654 34579999999753 33344443
No 152
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=52.35 E-value=16 Score=30.93 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=38.9
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
..+.|-|++.. .+...|++.|+. |.++ .++...++ .-+.|++.|.|...- .-..|+
T Consensus 26 ~~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~-~a~~A~ 84 (115)
T 2cpz_A 26 ANLFIYHLPQE---------FGDQDLLQMFMP--FGNVVSAKVFIDKQTNLSKCFGFVSYDNPV-SAQAAI 84 (115)
T ss_dssp CCEEEESCCSS---------CCHHHHHHHHGG--GSCCSEEEEEECSSSCSEEEEEEEECSSHH-HHHHHH
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEECCCCCCcCccEEEEECCHH-HHHHHH
Confidence 45778898865 356889999999 8764 56666654 346799999998543 333444
No 153
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=52.00 E-value=15 Score=34.67 Aligned_cols=50 Identities=8% Similarity=0.019 Sum_probs=37.3
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC-CceeEEEEeCCCh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG-HSGFAVVEFYKDW 182 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G-h~g~aVV~F~~dw 182 (630)
-++.|-|+|.. .+...|++.|+. |.++ .|+......| +.|++.|+|.+.-
T Consensus 110 ~~l~V~nLp~~---------~t~~~L~~~F~~--~G~v~~v~i~~~~~~~~kG~aFVeF~~~e 161 (193)
T 2voo_A 110 RSVYIKGFPTD---------ATLDDIKEWLED--KGQVLNIQMRRTLHKAFKGSIFVVFDSIE 161 (193)
T ss_dssp TEEEEECCCTT---------CCHHHHHHHHTT--SCCEEEEEEEECTTCCEEEEEEEEESSHH
T ss_pred CEEEecCCCCc---------CCHHHHHHHHhc--CCCEEEEEEEECCCCCcccEEEEEECCHH
Confidence 46788898864 256889999999 8875 4555555444 6799999998744
No 154
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.81 E-value=7.7 Score=26.23 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=20.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.++.+|.|+.|+.. |.....|..|...
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 32 (41)
T 2ept_A 6 SGQRVYECQECGKS---FRQKGSLTLHERI 32 (41)
T ss_dssp CCCCCEECSSSCCE---ESSHHHHHHHGGG
T ss_pred CCCCCeECCCCCCC---cCCHHHHHHHHHH
Confidence 35678999999744 6777888888654
No 155
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=51.74 E-value=22 Score=28.76 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=36.6
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCC---CcccccccCC--CCCceeEEEEeCCChhhhHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFN---PLKVHPLWSR--RGHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~---p~kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
.+.|-|++.. .+...|++.|+. |. ...++...++ .-+.|++.|.|.+ -..-..|+
T Consensus 3 ~l~V~nL~~~---------~t~~~l~~~F~~--~G~~~v~~v~i~~~~~~g~~kG~afV~f~~-~~~a~~Ai 62 (90)
T 3p5t_L 3 ALYIGNLTWW---------TTDEDLTEAVHS--LGVNDILEIKFFENRANGQSKGFALVGVGS-EASSKKLM 62 (90)
T ss_dssp -CEEESCCTT---------CCHHHHHHHHHT--TTCCCCCCEEEEECTTTCCEEEEEEECC-C-HHHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHH--hCCCceEEEEEEecCCCCccCcEEEEEECC-HHHHHHHH
Confidence 4567787764 367889999999 76 3466666653 3468999999975 44444555
No 156
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=51.51 E-value=7.4 Score=26.31 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=20.6
Q ss_pred EecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 34 EVSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 34 k~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
-.++.+|.|+.|+.. |.....|..|-..
T Consensus 6 H~~~~~~~C~~C~k~---f~~~~~l~~H~~~ 33 (42)
T 2epc_A 6 SGGETPYLCGQCGKS---FTQRGSLAVHQRS 33 (42)
T ss_dssp CCSSCCEECSSSCCE---ESSHHHHHHHHHH
T ss_pred CCCCCCeECCCCCcc---cCCHHHHHHHhhh
Confidence 346778999999744 6677788888543
No 157
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.44 E-value=1.1e+02 Score=28.03 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhchh
Q 038527 384 QVHKEEKEKLRRKIIELQKGLD 405 (630)
Q Consensus 384 e~hkrEKe~~~~kil~LEkqLd 405 (630)
++-+++..++..++.+||..|.
T Consensus 113 ~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 113 KELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666655554
No 158
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.34 E-value=16 Score=30.78 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=40.1
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC-CceeEEEEeCCChhhhHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~ 190 (630)
|-.+.|-|+|.. .+...|++.|+. |.++ .++...++.| +.|++.|.|.+.- .-..|+.
T Consensus 25 ~~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~~~i~~~~~g~~~g~afV~f~~~~-~a~~A~~ 84 (114)
T 1x5o_A 25 PTNLYISNLPLS---------MDEQELENMLKP--FGQVISTRILRDSSGTSRGVGFARMESTE-KCEAVIG 84 (114)
T ss_dssp TTEEEEESCCTT---------CCHHHHHHTTTT--TSCEEEEEEEECSSSCEEEEEEEEESCHH-HHHHHHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEEECCCCCcceEEEEEECCHH-HHHHHHH
Confidence 457778898865 367889999998 8654 5666666544 5799999998633 3344444
No 159
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=51.23 E-value=8.7 Score=31.31 Aligned_cols=54 Identities=13% Similarity=0.222 Sum_probs=35.9
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
++.|-|+|.. .+...|++.|+. |..+.+ +.....+.|++.|.|.+.-. -..|+.
T Consensus 18 ~l~V~nL~~~---------~t~~~l~~~F~~--~g~v~~--~~~~~~~~g~afV~f~~~~~-a~~A~~ 71 (96)
T 1fjc_A 18 TLLAKNLSFN---------ITEDELKEVFED--ALEIRL--VSQDGKSKGIAYIEFKSEAD-AEKNLE 71 (96)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHCS--EEEECC--EEETTEEEEEEEEEESSHHH-HHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHhh--CCcEEE--eCCCCCcceEEEEEECCHHH-HHHHHH
Confidence 4668888764 367889999998 755443 33344568999999986433 334433
No 160
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=51.21 E-value=13 Score=35.09 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=41.4
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
.+.|-|++.. .+...|.+.|+. |.++ .++++++..+.+|++.|.|.+.-.- ..|+
T Consensus 105 ~l~v~nl~~~---------~t~~~l~~~F~~--~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a-~~Ai 160 (213)
T 4f02_A 105 NIFIKNLDKS---------IDNKALYDTFSA--FGNILSCKVVCDENGSKGYGFVHFETQEAA-ERAI 160 (213)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGG--GSCEEEEEEEEETTEEEEEEEEEESSHHHH-HHHH
T ss_pred cceECCcccc---------cHHHHHHHHHhh--cCCeEEEEeeccCCCCceEEEEEeCCHHHH-HHHH
Confidence 4667888765 357889999999 8764 6777778888999999999775433 3444
No 161
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=51.18 E-value=16 Score=32.67 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=41.2
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC--CCceeEEEEeCCChhhhHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR--GHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~--Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
+-++.|-|+|.. .+...|.+.|+. |.++ .|+.+.++. -+.|+|.|.|.+.-. -..|+.
T Consensus 39 ~~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-A~~Ai~ 99 (156)
T 1h2v_Z 39 SCTLYVGNLSFY---------TTEEQIYELFSK--SGDIKKIIMGLDKMKKTACGFCFVEYYSRAD-AENAMR 99 (156)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSHHH-HHHHHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEecCCCCccceEEEEEECCHHH-HHHHHH
Confidence 567888999864 357889999999 8765 666666653 367999999976443 344444
No 162
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.16 E-value=11 Score=31.02 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=36.7
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCC--CCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
..+.|-|++.. .+...|++.|+. | ..++.+..+ ..+.|++.|.|.+. ..-..|+.
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~--~--~~~~~~~~~~~~~~~g~afV~f~~~-~~A~~A~~ 72 (102)
T 2fc8_A 16 KTLFVKGLSED---------TTEETLKESFDG--S--VRARIVTDRETGSSKGFGFVDFNSE-EDAKAAKE 72 (102)
T ss_dssp SSEEEECCCTT---------CCHHHHHHTSTT--C--SEEEEEECSSSCSEEEEEEEECSSH-HHHHHHHH
T ss_pred CEEEEeCCCCc---------cCHHHHHHHhcC--C--eEEEEEecCCCCCcCcEEEEEECCH-HHHHHHHH
Confidence 34668888764 367889998986 8 355555543 34679999999853 33444544
No 163
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=51.11 E-value=20 Score=30.81 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=40.1
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC--CCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR--GHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~--Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.+.|-|++.. .+...|++.|+. |.++ .++..+++. -+.|++.|.|.+.-.. ..|+.
T Consensus 8 ~lfV~nL~~~---------~te~~L~~~F~~--~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A-~~Ai~ 66 (110)
T 3s8s_A 8 EVTFARLNDN---------VRETFLKDMCRK--YGEVEEVEILLHPRTRKHLGLARVLFTSTRGA-KETVK 66 (110)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHTT--TSCEEEEEEEECTTTCCEEEEEEEEESSHHHH-HHHHH
T ss_pred EEEEECCCCC---------CCHHHHHHHHHh--cCCeeEEEEEECCCCCceeeEEEEEECCHHHH-HHHHH
Confidence 5678888764 367889999999 8875 666777654 4689999999875333 44443
No 164
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=51.07 E-value=18 Score=30.61 Aligned_cols=58 Identities=16% Similarity=0.267 Sum_probs=40.1
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~l 191 (630)
-.+.|-|++.. .+...|++.|+. |.++ .++...++ .-+.|++.|.|.. -..-..|+..
T Consensus 28 ~~l~V~nLp~~---------~te~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~a~~Ai~~ 88 (116)
T 1x4b_A 28 RKLFIGGLSFE---------TTEESLRNYYEQ--WGKLTDCVVMRDPASKRSRGFGFVTFSS-MAEVDAAMAA 88 (116)
T ss_dssp TEEEEECCTTC---------CCHHHHHHHHTS--SCCCSEEEEECCTTTSSCCSEEEEECSS-HHHHHHHHTS
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEEECCCCCCcCceEEEEeCC-HHHHHHHHHh
Confidence 56778898864 356889999999 8764 66666654 3467999999985 3334444443
No 165
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=50.76 E-value=16 Score=28.93 Aligned_cols=49 Identities=24% Similarity=0.192 Sum_probs=32.1
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhC----CC------CCcccccccCCCCCceeEEEEeCCCh
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSK----GF------NPLKVHPLWSRRGHSGFAVVEFYKDW 182 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~----GF------~p~kv~~l~g~~Gh~g~aVV~F~~dw 182 (630)
+..+.|-|+|.. .+...|++.|+.- |+ ....++... ..|++.|.|.+.-
T Consensus 6 ~~~l~V~nLp~~---------~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~----~kg~afV~f~~~~ 64 (87)
T 2hzc_A 6 ARRLYVGNIPFG---------ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVD 64 (87)
T ss_dssp GGEEEEESCCTT---------CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS----SSSEEEEEESSHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHHHhhhcccccCCCCcceEEEecC----CCcEEEEEcCCHH
Confidence 356778888864 3678899999992 22 122333332 2799999998743
No 166
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=50.73 E-value=2.7e+02 Score=30.66 Aligned_cols=65 Identities=20% Similarity=0.240 Sum_probs=35.1
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 038527 247 KEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQ---MDEMNKSRNEEIRKMQQS 311 (630)
Q Consensus 247 i~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~meE---k~~l~~~yneE~~kmQ~~ 311 (630)
+..+..|.-..-|..|+|.|..-.+.-...-.-.+.++..|+....+ ++....+|.++++.-+..
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~y 122 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVT 122 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555544445555555554433 566666666666654433
No 167
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=50.68 E-value=8.1 Score=26.11 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=20.7
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.++.+|.|+.|+.. |.....|..|-..
T Consensus 7 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 33 (42)
T 2ytb_A 7 GGEKPYRCDQCGKA---FSQKGSLIVHIRV 33 (42)
T ss_dssp CSCCSBCCTTTTCC---BSSHHHHHTTGGG
T ss_pred CCCCCeeCCCccch---hCCHHHHHHHHHH
Confidence 45678999999754 6777888888544
No 168
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=50.50 E-value=7.9 Score=25.96 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=19.4
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
++.+|.|+.|+.. |..-..|..|-..
T Consensus 3 ~~k~~~C~~C~k~---f~~~~~L~~H~~~ 28 (39)
T 1njq_A 3 PPRSYTCSFCKRE---FRSAQALGGHMNV 28 (39)
T ss_dssp CSSSEECTTTCCE---ESSHHHHHHHHHT
T ss_pred CCCceECCCCCcc---cCCHHHHHHHHHH
Confidence 4578999999744 6677788888543
No 169
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=50.36 E-value=15 Score=32.17 Aligned_cols=59 Identities=12% Similarity=0.213 Sum_probs=41.1
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcc---cccccCC--CCCceeEEEEeCCChhhhHHHHHHHh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLK---VHPLWSR--RGHSGFAVVEFYKDWAGFKNAIMFEK 193 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~k---v~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~lek 193 (630)
.+.|-|++.. .+...|++.|+. |.++. |+...++ .-+.||+.|.|... ..-.-...|+.
T Consensus 25 ~lfV~nL~~~---------~te~~L~~~F~~--~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g 88 (131)
T 2m2b_A 25 TIILRNLNPH---------STMDSILGALAP--YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA 88 (131)
T ss_dssp EEEECSCCTT---------CCSHHHHHHHGG--GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHH--hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC
Confidence 5668888765 256889999999 87763 5677665 34689999999987 54433334443
No 170
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.35 E-value=16 Score=30.08 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=35.8
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCCh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDW 182 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw 182 (630)
++.|-|+|.. .+...|.+.|+. |.++ .++..+++ .-+.|++.|.|.+.-
T Consensus 10 ~l~V~nlp~~---------~~~~~l~~~f~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 61 (104)
T 1p1t_A 10 SVFVGNIPYE---------ATEEQLKDIFSE--VGPVVSFRLVYDRETGKPKGYGFCEYQDQE 61 (104)
T ss_dssp CEEEESCCTT---------SCHHHHHHHHHT--TSCCSEEEEEEETTTTEEEEEEEEECSCHH
T ss_pred EEEEeCCCCc---------CCHHHHHHHHHh--cCCeeEEEEEeCCCCCccceEEEEEECCHH
Confidence 4678888764 367889999999 8664 56666653 235799999997643
No 171
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=50.29 E-value=77 Score=34.38 Aligned_cols=54 Identities=26% Similarity=0.336 Sum_probs=38.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhcc-CCccccc--------eeecC
Q 038527 429 EENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEG-RTRATIG--------VKRMG 499 (630)
Q Consensus 429 ~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~~l~~~-~~~~~Ig--------iKrmG 499 (630)
++-.+++..+.+|.+++.+.+.++ .++++....++-.+..+ ...+++| |++-|
T Consensus 69 ~~~~~l~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ipN~~~~~vP~g~~e~~n~~~~~~g 130 (455)
T 2dq0_A 69 EPVDELLAKSREIVKRIGELENEV------------------EELKKKIDYYLWRLPNITHPSVPVGKDENDNVPIRFWG 130 (455)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHTTSCCCCCTTSCCCSSGGGCEEEEEES
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhCCCCCCccCCCCCCCCCCEEEEEcC
Confidence 344567888888888887777776 35666666777777777 4555666 99999
Q ss_pred C
Q 038527 500 E 500 (630)
Q Consensus 500 e 500 (630)
+
T Consensus 131 ~ 131 (455)
T 2dq0_A 131 K 131 (455)
T ss_dssp C
T ss_pred C
Confidence 7
No 172
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=49.72 E-value=17 Score=30.75 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=36.9
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWA 183 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~ 183 (630)
..+.|-|++.. .+..+|++.|+. |.++ .++...++ ..+.|++.|.|.+.-.
T Consensus 41 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 94 (118)
T 2khc_A 41 CNLFIYHLPQE---------FTDTDLASTFLP--FGNVISAKVFIDKQTSLSKCFGFVSFDNPDS 94 (118)
T ss_dssp EEEEEECSCTT---------CCHHHHHHHTTT--SCEEEEEEECCCSSSSCCCCEEEEEEESSHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEEeCCCCCCcCcEEEEEECCHHH
Confidence 45678898864 367889999999 8764 45555543 3468999999987544
No 173
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=49.72 E-value=19 Score=35.14 Aligned_cols=63 Identities=11% Similarity=0.091 Sum_probs=39.3
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCC-CceeEEEEeCCChhhhHHHHH-HHh
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIM-FEK 193 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~-lek 193 (630)
+..+.|-|+|.. .+...|.+.|+.-|+....++......| +.|++.|.|.+.- .-..|+. |+.
T Consensus 117 ~~~l~v~nlp~~---------~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~-~a~~A~~~l~g 181 (292)
T 2ghp_A 117 ECTLWMTNFPPS---------YTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKE-DARYCVEKLNG 181 (292)
T ss_dssp SCEEEEECCCTT---------CCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHH-HHHHHHHHHTT
T ss_pred CCEEEEECCCCC---------CCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHH-HHHHHHHHhCC
Confidence 456778888765 3678899999994434466666665544 7899999997643 3344444 443
No 174
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=49.70 E-value=20 Score=31.88 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=40.5
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
+..+.|-|+|.. .+...|.+.|+. |.++ .++...++ ..+.|++.|.|.+.- .-..|+
T Consensus 70 ~~~l~v~nl~~~---------~~~~~l~~~F~~--~G~v~~~~i~~~~~~g~~~g~afV~f~~~~-~a~~A~ 129 (158)
T 2kn4_A 70 MTSLKVDNLTYR---------TSPDTLRRVFEK--YGRVGDVYIPRDRYTKESRGFAFVRFHDKR-DAEDAM 129 (158)
T ss_dssp CCEEEEESCCTT---------CCHHHHHHHHHH--HSCEEEEECCCCSSCTTSCCEEEEEESBHH-HHHHHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEeecCCCCccceEEEEEECCHH-HHHHHH
Confidence 456778898765 367889999999 8775 56666653 347899999998643 334444
No 175
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.62 E-value=8.3 Score=26.59 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=20.4
Q ss_pred EEecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 33 VEVSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 33 Vk~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
+-..+.+|.|+.|+.. |.....|..|-.
T Consensus 6 ~h~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (44)
T 2eou_A 6 SGAAKTTSECQECGKI---FRHSSLLIEHQA 33 (44)
T ss_dssp SCSSSCCCCCTTTCCC---CSSHHHHHHHHH
T ss_pred CCCCCcCeECCCCCcc---cCCHHHHHHHHH
Confidence 3346788999999754 666777888854
No 176
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.61 E-value=6.7 Score=27.26 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=22.2
Q ss_pred eEEecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 32 KVEVSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 32 kVk~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+-....+|.|+.|+.. |.....|..|-..
T Consensus 5 ~~h~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ysp_A 5 SSGTGEKPYKCEKCGKG---YNSKFNLDMHQKV 34 (46)
T ss_dssp CCCSSCCSEEETTTTEE---ESCHHHHHHHHTT
T ss_pred cCCCCCCCeECCCCCCc---cCCHHHHHHHHHh
Confidence 33456789999999744 7778888888554
No 177
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=49.60 E-value=17 Score=28.76 Aligned_cols=59 Identities=8% Similarity=0.227 Sum_probs=39.5
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHH-HHh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIM-FEK 193 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~-lek 193 (630)
.+.|-|+|.. .+...|++.|+. |.++ .+....++ ..+.|++.|.|.+.- .-..|+. |+.
T Consensus 7 ~l~v~nlp~~---------~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~~-~a~~A~~~l~g 69 (85)
T 1x4e_A 7 GLYIRGLQPG---------TTDQDLVKLCQP--YGKIVSTKAILDKTTNKCKGYGFVDFDSPS-AAQKAVTALKA 69 (85)
T ss_dssp EEEEESCCTT---------CCHHHHHTTSTT--TSCEEEEEEECCSSSCSCCSEEEEEESCHH-HHHHHHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEecCCCCCcCcEEEEEECCHH-HHHHHHHHhcC
Confidence 4668888764 356789999998 8775 45555543 346899999998643 3345554 443
No 178
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=49.53 E-value=1.3e+02 Score=26.09 Aligned_cols=72 Identities=19% Similarity=0.151 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHhchhH----HhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHH
Q 038527 388 EEKEKLRRKIIELQKGLDA----KQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSL 462 (630)
Q Consensus 388 rEKe~~~~kil~LEkqLd~----kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L 462 (630)
.+++.+.++.-++|.++.. ..++|-||..|+-+++++.- +=......+.+....|++.+......|+-+.+|
T Consensus 16 ~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~---eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 16 LDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTED---SRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777666543 33577788888888776644 111244556666666666666666444444444
No 179
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.40 E-value=8 Score=26.57 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=20.6
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
..+.+|.|+.|+.. |.....|..|...
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (44)
T 2yu5_A 8 AGENPFKCSKCDRV---FTQRNYLVQHERT 34 (44)
T ss_dssp SCCCSEECSSSSCE---ESSSHHHHHHHHH
T ss_pred CCCCCeECCCCCch---hCCHHHHHHHhHh
Confidence 46678999999754 6677888888654
No 180
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.15 E-value=9.1 Score=26.55 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=20.6
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2enf_A 8 TGEKPYKCNECGKV---FTQNSHLVRHRGI 34 (46)
T ss_dssp CCCCSCBCSSSCCB---CSSHHHHHHHHTT
T ss_pred CCCcCeECCCCCcc---cCCHHHHHHHHHh
Confidence 46788999999744 7777888888543
No 181
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=49.08 E-value=8.3 Score=26.70 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=21.1
Q ss_pred EecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 34 EVSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 34 k~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
-....+|.|+.|+.. |.....|..|-..
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2em9_A 7 GTGEKPYNCKECGKS---FRWASCLLKHQRV 34 (46)
T ss_dssp CCCCCSEECSSSCCE---ESSHHHHHHHGGG
T ss_pred CCCCcCeECCccccc---cCChHHHHHHHHH
Confidence 346778999999744 6777888888544
No 182
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=48.97 E-value=8.6 Score=26.05 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=20.3
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.++.+|.|+.|+.. |.....|..|-..
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 32 (42)
T 2el5_A 6 SGENPYECSECGKA---FNRKDQLISHQRT 32 (42)
T ss_dssp SSCCSEECSSSCCE---ESSHHHHHHHHGG
T ss_pred CCCCCccCCCcChh---hCCHHHHHHHHHh
Confidence 35678999999744 6777888888654
No 183
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=48.86 E-value=73 Score=34.37 Aligned_cols=76 Identities=9% Similarity=0.093 Sum_probs=42.8
Q ss_pred eeecCCCCC-CChhhhhhhhCCCCcCh----hhHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhhhh----------
Q 038527 219 IARDDDYNS-KSLIGDHLRKNGDLKTV----SGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLET---------- 283 (630)
Q Consensus 219 vAradDy~s-~g~ig~~Lrk~gdLKTv----~ei~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~e~---------- 283 (630)
+|.++.--- ..-+|.+|--.|.|.++ .--+....+....+|.-|.|.-...+.+++.+...++..
T Consensus 2 ~~~~~~c~~~~~~~G~~CPT~C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~ 81 (409)
T 1m1j_C 2 IATRENCCILDERFGSYCPTTCGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQ 81 (409)
T ss_dssp --CTTTSSSCCGGGCCEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHH
T ss_pred ccccCCcccCCcccCCcCCCcccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhh
Confidence 455555432 23588888777765322 222334455556666666666666777777777776653
Q ss_pred -hHHHHHHHHHH
Q 038527 284 -STYLDLTMEQM 294 (630)
Q Consensus 284 -~~sL~r~meEk 294 (630)
+.+.++|+++.
T Consensus 82 ~tq~skkml~~~ 93 (409)
T 1m1j_C 82 LTQKSKKIIEEI 93 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 45555555554
No 184
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=48.83 E-value=20 Score=32.28 Aligned_cols=49 Identities=27% Similarity=0.381 Sum_probs=37.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCC
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKD 181 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~d 181 (630)
..+.|-|+|.. .+...|.+.|+. |.++ .++...++ ..+.|++.|.|.+.
T Consensus 105 ~~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 105 KKIFVGGIKED---------TEEHHLRDYFEQ--YGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp SEEEEECCTTT---------CCHHHHHHHHTT--TSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred ceEEEeCCCCC---------CCHHHHHHHHhc--CCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 57888998865 357889999998 8875 55666553 33689999999874
No 185
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.69 E-value=9.5 Score=26.54 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=21.6
Q ss_pred EEecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 33 VEVSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 33 Vk~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
+-..+.+|.|+.|+.. |.....|..|-..
T Consensus 6 ~h~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2elz_A 6 SGSVEKPYKCEDCGKG---YNRRLNLDMHQRV 34 (46)
T ss_dssp CCCCCSSCBCSSSCCB---CSSHHHHHHHGGG
T ss_pred CCCCCCCeeCcccCch---hCCHHHHHHHHHh
Confidence 3356789999999754 6777888888553
No 186
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.62 E-value=8.8 Score=26.36 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=21.0
Q ss_pred EecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 34 EVSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 34 k~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
-.+..+|.|+.|+.. |.....|..|-..
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (44)
T 2emb_A 7 GHTRKRYECSKCQAT---FNLRKHLIQHQKT 34 (44)
T ss_dssp CCCCSSEECTTTCCE---ESCHHHHHHHGGG
T ss_pred cCCCCCeECCCCCCc---cCCHHHHHHHHHH
Confidence 346778999999754 6677888888543
No 187
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.56 E-value=8.9 Score=26.62 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=20.3
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~~~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2emi_A 8 TGERHYECSECGKA---FIQKSTLSMHQRI 34 (46)
T ss_dssp SSCCCEECSSSCCE---ESSHHHHHHHHGG
T ss_pred CCCCCCCCCCCCcc---cCCHHHHHHHHhH
Confidence 46678999999744 6677888888543
No 188
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.52 E-value=22 Score=28.64 Aligned_cols=50 Identities=12% Similarity=0.272 Sum_probs=34.0
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
.+.|-|+|.. .+...|.+.|+. |.++....+. .|++.|.|.+. ..-..|+
T Consensus 10 ~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~~~-----~g~afV~f~~~-~~A~~A~ 59 (90)
T 2dnq_A 10 KLFIGNLPRE---------ATEQEIRSLFEQ--YGKVLECDII-----KNYGFVHIEDK-TAAEDAI 59 (90)
T ss_dssp EEEEESCCSS---------CCHHHHHHHHHT--SSCEEEEEEE-----TTEEEEEESSH-HHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--CCCEEEEEEE-----CCEEEEEECCH-HHHHHHH
Confidence 4667888764 367889999999 8775333332 68999999863 3334444
No 189
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=48.51 E-value=9.2 Score=22.95 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=15.9
Q ss_pred eeeccCCCCCCccccchHHHHhhhh
Q 038527 39 AYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 39 ~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
+|.|+.|+.. |.....|..|-.
T Consensus 1 ~~~C~~C~k~---f~~~~~l~~H~~ 22 (27)
T 1znf_A 1 XYKCGLCERS---FVEKSALSRHQR 22 (27)
T ss_dssp -CBCSSSCCB---CSSHHHHHHHGG
T ss_pred CccCCCCCCc---CCCHHHHHHHHH
Confidence 4889999744 666778888854
No 190
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.38 E-value=9.1 Score=26.48 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=20.8
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2yts_A 8 TGEKPYICNECGKS---FIQKSHLNRHRRI 34 (46)
T ss_dssp CSCCSEECSSSCCE---ESSHHHHHHHGGG
T ss_pred CCCcCEECCCCChh---hCChHHHHHHHHh
Confidence 46778999999744 7778888888543
No 191
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.22 E-value=9.4 Score=26.48 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=20.7
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |.....|..|...
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eq1_A 8 TGEKPYKCNECGKA---FRAHSNLTTHQVI 34 (46)
T ss_dssp CCSCCCCCTTTTCC---CSSHHHHHHHHTT
T ss_pred CCCCCeECCcCChh---hCCHHHHHHHHHH
Confidence 46778999999744 7777888888654
No 192
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=48.21 E-value=9.6 Score=25.71 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=20.1
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.++.+|.|+.|+.. |.....|..|-..
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 32 (42)
T 2yte_A 6 SGEKPYSCAECKET---FSDNNRLVQHQKM 32 (42)
T ss_dssp CSCCSCBCTTTCCB---CSSHHHHHHHHHH
T ss_pred CCCCCeECCCCCCc---cCCHHHHHHHHHH
Confidence 35678999999744 6677788888543
No 193
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=48.12 E-value=17 Score=39.01 Aligned_cols=56 Identities=29% Similarity=0.579 Sum_probs=39.9
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC-CC-CceeEEEEeCCChhhhHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR-RG-HSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~-~G-h~g~aVV~F~~dw~Gf~nA~ 189 (630)
-++.|-|++.. .+...|.+.|+. |.++ .|.++++. .| +.|||.|.|...-. -..|+
T Consensus 103 ~~lfV~nL~~~---------~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~-A~~Ai 161 (437)
T 3pgw_S 103 KTLFVARVNYD---------TTESKLRREFEV--YGPIKRIHMVYSKRSGKPRGYAFIEYEHERD-MHSAY 161 (437)
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHH--cCCeeEEEeeccCCCCCccceEEEeeccHHH-HHHHH
Confidence 46778898765 367889999999 8775 56666653 33 57999999976544 34454
No 194
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=47.98 E-value=25 Score=28.83 Aligned_cols=54 Identities=20% Similarity=0.236 Sum_probs=36.4
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
-++.|-|+|.. .+...|++.|+. |.+..|..+.-. +|++.|.|.+. ..-..|+.
T Consensus 16 ~~l~V~nLp~~---------~t~~~l~~~F~~--~g~g~v~~~~~~---~g~afV~f~~~-~~A~~A~~ 69 (99)
T 2cpd_A 16 KILYVRNLMLS---------TSEEMIEKEFNN--IKPGAVERVKKI---RDYAFVHFSNR-EDAVEAMK 69 (99)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHHT--TSTTCEEEEEEC---SSEEEEEESSH-HHHHHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCcceEEEEEe---CCeEEEEeCCH-HHHHHHHH
Confidence 35678898764 367889999999 855555544433 56999999763 33444444
No 195
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=47.94 E-value=19 Score=31.78 Aligned_cols=56 Identities=23% Similarity=0.292 Sum_probs=39.1
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC--CCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR--GHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~--Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
++.|-|+|.. .+...|++.|+. |.++ .++..+++. -+.|++.|.|...- .-..|+.
T Consensus 48 ~l~V~nLp~~---------~te~~L~~~F~~--~G~I~~v~i~~d~~tg~~~G~afV~F~~~~-~A~~Ai~ 106 (129)
T 2kxn_B 48 CLGVFGLSLY---------TTERDLREVFSK--YGPIADVSIVYDQQSRRSRGFAFVYFENVD-DAKEAKE 106 (129)
T ss_dssp CBCEETCTTS---------CCHHHHHHHHTT--TSCEEEEEEECCSSSSCCCCEEEEEESCHH-HHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEecCCCCccceEEEEEECCHH-HHHHHHH
Confidence 4667898764 367889999999 8775 566666543 46899999997643 3344444
No 196
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=47.74 E-value=29 Score=30.42 Aligned_cols=58 Identities=10% Similarity=0.191 Sum_probs=40.2
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
+..+.|-|+|.. .+...|.+.|+. |.++ .++...++ ..++|++.|.|.+. ..-..|+.
T Consensus 87 ~~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~-~~a~~A~~ 147 (167)
T 2cjk_A 87 TGKIFVGGIGPD---------VRPKEFEEFFSQ--WGTIIDAQLMLDKDTGQSRGFGFVTYDSA-DAVDRVCQ 147 (167)
T ss_dssp CEEEEEEEECTT---------CCHHHHHHHHHT--TSCCSEEECCCSSSSSTTSEEEEEEESSH-HHHHHHHH
T ss_pred CCeEEECCCCCC---------CCHHHHHHHHHh--CccEEEEEEEEcCCCCccceEEEEEECCH-HHHHHHHh
Confidence 346788898864 367889999999 8765 56666553 34779999999763 33344443
No 197
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.56 E-value=9 Score=26.15 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=20.1
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (44)
T 2eof_A 8 TGEKPYECNECQKA---FNTKSNLMVHQRT 34 (44)
T ss_dssp SCCCSEECTTTCCE---ESCHHHHHHHHHH
T ss_pred CCCCCeECCCCCcc---cCCHhHHHHHHHH
Confidence 45678999999744 6677888888543
No 198
>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5
Probab=47.54 E-value=15 Score=33.23 Aligned_cols=101 Identities=13% Similarity=0.163 Sum_probs=48.1
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhC-CCCCcccccccCCCCCceeEEEEeCCChhhhHHHHHHHhhhhhcC
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSK-GFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKSFEVDH 199 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~-GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~lek~Fe~~~ 199 (630)
|||..|+.+.+- .....-...-+..|.+.++.. ||-... .+.++.| . ...|-|=.|-..|..-.+-..|-+++.
T Consensus 11 ~pm~aViFe~~~-~~~~~~Y~~la~~~~~la~~qpGFI~~E--s~~~~dg-~-~is~SyW~deeai~aW~~~~eHr~Aq~ 85 (122)
T 2go8_A 11 PPYYAVIFSSVK-SENDTGYGETAERMVSLAADQPGFLGVE--SVREADG-R-GITVSYWDSMDAINHWRHHTEHQAAKE 85 (122)
T ss_dssp SCEEEEEEEEEC-C------CHHHHHHHHHHHHSTTEEEEE--EEECTTS-E-EEEEEEESCHHHHHHHHHHC-------
T ss_pred CCEEEEEEEEEe-CCchhHHHHHHHHHHHHHhhCCCceEEE--EEEcCCC-C-EEEEEEeCCHHHHHHHHhCHHHHHHHH
Confidence 677777665553 222222233356667666654 776655 5666656 4 456777788889999999999999999
Q ss_pred CChhhhhhh-cC---CCccceeeeeecCCCC
Q 038527 200 HGKKDFYAV-KN---LGDKLYGWIARDDDYN 226 (630)
Q Consensus 200 ~GKkdW~~~-~~---~~~~LYGWvAradDy~ 226 (630)
.||..|... +- .--.=||+-.+..|+.
T Consensus 86 ~Gr~~w~~~y~~rv~~V~r~y~~~~~~~~~~ 116 (122)
T 2go8_A 86 KGRSVWYESYAVRVAKVDRQRLFQENTNDLE 116 (122)
T ss_dssp ------CCEEEEEEEEECCCCCCCC------
T ss_pred hHHHHHhccCcEEEEEEEEEecCCCCCcchh
Confidence 999999864 21 1334466655555543
No 199
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.23 E-value=9.4 Score=26.56 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=20.5
Q ss_pred EecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 34 EVSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 34 k~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
-....+|.|+.|+.. |.....|..|-..
T Consensus 7 H~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2en9_A 7 GAGKKLFKCNECKKT---FTQSSSLTVHQRI 34 (46)
T ss_dssp CCSSCCCBCTTTCCB---CSSHHHHHHHHHH
T ss_pred CCCCCCEECCccCcc---cCCHHHHHHHHHH
Confidence 346788999999744 6677778888543
No 200
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=47.07 E-value=21 Score=31.65 Aligned_cols=54 Identities=26% Similarity=0.361 Sum_probs=36.6
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
-.+.|-|+|.. .+...|++.|+. |.++ .++...+ ++|++.|.|.+.- .-..|+.
T Consensus 74 ~~l~V~nl~~~---------~t~~~l~~~F~~--~G~i~~v~i~~~---~~g~afV~f~~~~-~a~~A~~ 128 (150)
T 2i2y_A 74 CKVYVGNLGNN---------GNKTELERAFGY--YGPLRSVWVARN---PPGFAFVEFEDPR-DAADAVR 128 (150)
T ss_dssp CEEEEESCCSC---------CSCHHHHHHHHH--HSCEEEEEECSS---SCSEEEEEESSHH-HHHHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--hCCEEEEEEeeC---CCcEEEEEECCHH-HHHHHHH
Confidence 45678888764 356789999999 8765 3444433 7899999997643 3344443
No 201
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.05 E-value=9.8 Score=26.30 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=19.9
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eow_A 8 TGEKPYKCNECGKA---FRARSSLAIHQAT 34 (46)
T ss_dssp CCCCCEECTTSCCE---ESSHHHHHHHHHH
T ss_pred CCCCCeeccccCCh---hcCHHHHHHHHHH
Confidence 46778999999744 6677778788543
No 202
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=46.94 E-value=1.5e+02 Score=32.10 Aligned_cols=52 Identities=10% Similarity=0.132 Sum_probs=25.2
Q ss_pred hhhhhhhhCCCCcC----hhhHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHHHHhh
Q 038527 230 LIGDHLRKNGDLKT----VSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYL 281 (630)
Q Consensus 230 ~ig~~Lrk~gdLKT----v~ei~~E~~rk~~~lv~~L~n~I~~kn~~l~elE~k~~ 281 (630)
-||.||--.|.|.+ +.--|....+....+|..++|.=.....+++.|..+++
T Consensus 14 ~fG~~CPTtCgl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~ 69 (411)
T 3ghg_C 14 RFGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYN 69 (411)
T ss_dssp CCSCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCcCCCcchHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Confidence 35666655554322 22223333444444555555555555556666655543
No 203
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.92 E-value=24 Score=27.88 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=35.1
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
++.|-|+|.. .+...|++.|+. |.+. .++... +.|++.|.|.+ ...-..|+.
T Consensus 14 ~l~V~~l~~~---------~t~~~l~~~f~~--~G~i~~~~~~~----~kg~afV~f~~-~~~A~~a~~ 66 (85)
T 2ytc_A 14 TLYVGGLGDT---------ITETDLRNHFYQ--FGEIRTITVVQ----RQQCAFIQFAT-RQAAEVAAE 66 (85)
T ss_dssp CEEEECCTTT---------SCHHHHHHHHHT--TSCEEEEEEEG----GGTEEEEEESS-HHHHHHHHH
T ss_pred EEEEcCCCCC---------CCHHHHHHHHHh--CCCEeEEEEEC----CCCEEEEEECC-HHHHHHHHH
Confidence 4668888764 367889999999 8764 344433 36899999986 333344443
No 204
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.91 E-value=9.8 Score=26.29 Aligned_cols=27 Identities=19% Similarity=0.396 Sum_probs=20.4
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ytf_A 8 TGEKPFECSECQKA---FNTKSNLIVHQRT 34 (46)
T ss_dssp CCCCSEECSSSCCE---ESSHHHHHHHHHT
T ss_pred CCCCCcCCCCCCcc---cCCHHHHHHHHHH
Confidence 45678999999744 7777888888543
No 205
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.80 E-value=10 Score=26.48 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=20.9
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eon_A 8 TGEKPYKCQVCGKA---FRVSSHLVQHHSV 34 (46)
T ss_dssp SSCCSCBCSSSCCB---CSSHHHHHHHTTT
T ss_pred CCCcccCCCCCCcc---cCcHHHHHHHHHh
Confidence 46778999999744 7778888889543
No 206
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.80 E-value=9.5 Score=26.45 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=20.6
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
..+.+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ep3_A 8 TGEKPYRCAECGKA---FTDRSNLFTHQKI 34 (46)
T ss_dssp SCCCSEECSSSCCE---ESSHHHHHHHHTT
T ss_pred CCCCCeECCCCCch---hCCHHHHHHHHHH
Confidence 45678999999744 7778888888543
No 207
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.55 E-value=11 Score=26.17 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=20.6
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2emg_A 8 TGENPFICSECGKV---FTHKTNLIIHQKI 34 (46)
T ss_dssp CSCCSCBCTTTCCB---CSSHHHHHHHHTT
T ss_pred CCCCCEECCccCcc---cCCHHHHHHHHHH
Confidence 46678999999754 7777888888543
No 208
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=46.55 E-value=25 Score=29.96 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=34.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWA 183 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~ 183 (630)
.++.|-|+|.. .+..+|++.|+. |.++.-..+- -..|+|.|.|...-.
T Consensus 11 ~~l~V~nLp~~---------~te~~L~~~F~~--~G~i~~v~i~---~~~g~afV~f~~~~~ 58 (111)
T 1whx_A 11 TVILAKNLPAG---------TLAAEIQETFSR--FGSLGRVLLP---EGGITAIVEFLEPLE 58 (111)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHHHT--TSCEEEEECC---SSSSCEEEEESCHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEe---CCCCEEEEEeCCHHH
Confidence 35778898864 367889999999 8876333222 156799999986543
No 209
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.53 E-value=9.7 Score=25.97 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=20.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (44)
T 2en7_A 8 TGMKPYVCNECGKA---FRSKSYLIIHTRT 34 (44)
T ss_dssp SSSSSSCCTTTCCC---CSSHHHHHHHHTT
T ss_pred CCCcCeECCCCCCc---cCCHHHHHHHhhh
Confidence 45678999999754 6777888888643
No 210
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=46.47 E-value=24 Score=28.91 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=34.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWA 183 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~ 183 (630)
.++.|-|++.. .+...|++.|+. |.++.-..+. -+.|++.|.|.+.-.
T Consensus 28 ~~l~V~nlp~~---------~~~~~l~~~f~~--~G~i~~~~~~---~~~g~afV~f~~~~~ 75 (101)
T 2la4_A 28 TTAYIGNIPHF---------ATEADLIPLFQN--FGFILDFKHY---PEKGCCFIKYDTHEQ 75 (101)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHHT--TSCCSEEEEE---TTTTEEEEECSSHHH
T ss_pred CEEEEcCCCcc---------cCHHHHHHHHHh--CCCEEEEEEe---cCCCEEEEEECCHHH
Confidence 45778898764 367889999999 8765333222 357899999987543
No 211
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=46.44 E-value=10 Score=26.36 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=20.5
Q ss_pred EEecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 33 VEVSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 33 Vk~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
+-....+|.|+.|+.. |..-..|..|-..
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ely_A 6 SGTGEKPFKCVECGKG---FSRRSALNVHHKL 34 (46)
T ss_dssp CCCCCCSBCCSSSCCC---BSSTTHHHHHHHH
T ss_pred CCCCCCCcccCccCcc---cCCHHHHHHHHHH
Confidence 3456788999999754 6666777777543
No 212
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.31 E-value=10 Score=26.35 Aligned_cols=28 Identities=29% Similarity=0.415 Sum_probs=21.0
Q ss_pred EecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 34 EVSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 34 k~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
-....+|.|+.|+.. |..-..|..|-..
T Consensus 7 h~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2enh_A 7 GTGEKPYECDVCRKA---FSHHASLTQHQRV 34 (46)
T ss_dssp CCCSSSCBCTTTCCB---CSSSHHHHHHGGG
T ss_pred cCCCCCcCCCCcCch---hCCHHHHHHHHHH
Confidence 346778999999744 6777888888543
No 213
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.24 E-value=11 Score=26.09 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=21.0
Q ss_pred EecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 34 EVSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 34 k~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
-..+.+|.|+.|+.. |.....|..|-..
T Consensus 7 H~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (44)
T 2epv_A 7 GSGEKPYECNECGKA---FIWKSLLIVHERT 34 (44)
T ss_dssp CCCCCSEECSSSCCE---ESSHHHHHHHHGG
T ss_pred cCCCcCeECCCCCcc---cCchHHHHHHHhH
Confidence 346778999999744 7778888888543
No 214
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=46.11 E-value=9.1 Score=27.61 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=14.9
Q ss_pred CCeeeccCCCCCCccccchHHHHhhhh
Q 038527 37 ETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 37 ~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
+.+|.|+.|+.. |.....|..|-.
T Consensus 2 ~~~~~C~~C~~~---f~~~~~l~~H~~ 25 (57)
T 3uk3_C 2 SSSRECSYCGKF---FRSNYYLNIHLR 25 (57)
T ss_dssp ---CBCTTTCCB---CSCHHHHHHHHH
T ss_pred CCCccCCCCcch---hCChHHHHHHHH
Confidence 467899999754 566667777744
No 215
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.04 E-value=10 Score=26.34 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=20.1
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
..+.+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~~~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2em3_A 8 TGEKPYECKVCSKA---FTQKAHLAQHQKT 34 (46)
T ss_dssp SSCCSEECSSSCCE---ESSHHHHHHHHHH
T ss_pred CCCcCeECCCCCcc---cCCHHHHHHHHHH
Confidence 46778999999744 6677778888543
No 216
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=46.04 E-value=11 Score=26.30 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=20.6
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2ytp_A 8 TGERHYECSECGKA---FARKSTLIMHQRI 34 (46)
T ss_dssp CCCCCEECSSSCCE---ESSHHHHHHHHTT
T ss_pred CCCCCeECCcCCcc---cCCHHHHHHHHHH
Confidence 46788999999744 7777888888543
No 217
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.99 E-value=11 Score=26.25 Aligned_cols=28 Identities=21% Similarity=0.251 Sum_probs=20.4
Q ss_pred EEecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 33 VEVSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 33 Vk~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
+-....+|.|+.|+.. |.....|..|-.
T Consensus 6 ~h~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em8_A 6 SGSGEKPYKCVECGKG---YKRRLDLDFHQR 33 (46)
T ss_dssp CCCSCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCCCeECcccCch---hCCHHHHHHHHH
Confidence 3346788999999744 666777888854
No 218
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.89 E-value=12 Score=26.08 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=20.4
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2yth_A 8 SGEKPFQCEECGKR---FTQNSHLHSHQRV 34 (46)
T ss_dssp CCSSSBCCSSSCCC---BSSHHHHHHHGGG
T ss_pred CCCcCCCCCCCCcc---cCCHHHHHHHHHh
Confidence 46778999999754 6777788888543
No 219
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.78 E-value=2e+02 Score=27.14 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc
Q 038527 382 LAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 382 L~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~ 427 (630)
.|-.-+++...+..+.-+|++||..+..+ |.-|.++|.-+|++
T Consensus 102 MVa~ar~~~~~~e~r~~~L~~ql~e~~~~---l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 102 MVADARKEKYAIEILNKRLTEQLREKDTL---LDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34445788888899999999999988654 45566666666554
No 220
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.75 E-value=11 Score=26.14 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=20.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.++.+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eme_A 8 SGEKPYVCDYCGKA---FGLSAELVRHQRI 34 (46)
T ss_dssp CCCCSEECSSSCCE---ESSHHHHHHHHGG
T ss_pred CCCCCeECCCCChh---hCCHHHHHHHHHh
Confidence 45678999999754 6777888888543
No 221
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=45.65 E-value=19 Score=32.04 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=38.3
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
+.++.|.|+|.. .+...|++.|+. |..+.+. ....-++|++.|.|.+.- .-..|+.
T Consensus 99 ~~~l~v~nlp~~---------~t~~~l~~~F~~--~g~v~~~--~~~~~~~g~afV~f~~~~-~A~~A~~ 154 (175)
T 1fje_B 99 ARTLLAKNLSFN---------ITEDELKEVFED--ALEIRLV--SQDGKSKGIAYIEFKSEA-DAEKNLE 154 (175)
T ss_dssp GGEEEEESCCSS---------CCHHHHHHHCTT--CSEEEEE--CSSSSCCSEEEEECSSHH-HHHHHHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHh--cCeEEEe--cCCCCCceEEEEEECCHH-HHHHHHH
Confidence 457888998865 356889999998 7655443 334457899999998643 3344443
No 222
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=45.61 E-value=12 Score=27.83 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=20.3
Q ss_pred EecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 34 EVSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 34 k~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
-.++.+|.|+.|+.. |.....|..|-..
T Consensus 5 h~~~k~~~C~~C~k~---f~~~~~l~~H~~~ 32 (66)
T 2drp_A 5 KEGEHTYRCKVCSRV---YTHISNFCRHYVT 32 (66)
T ss_dssp EEETTEEECTTTCCE---ESSHHHHHHHHHH
T ss_pred cCCCcceECCCCcch---hCCHHHHHHHHHH
Confidence 356789999999744 6667778778543
No 223
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.44 E-value=11 Score=25.95 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=19.8
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.++.+|.|+.|+.. |.....|..|-.
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eov_A 8 TGEKPYKCSDCGKS---FTWKSRLRIHQK 33 (46)
T ss_dssp SSCCSCBCSSSCCB---CSSHHHHHHHHH
T ss_pred CCCCCccCCccChh---hCCHHHHHHHHH
Confidence 45678999999754 667778888854
No 224
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.39 E-value=22 Score=29.76 Aligned_cols=47 Identities=15% Similarity=0.299 Sum_probs=34.3
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWA 183 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~ 183 (630)
-++.|-|++.. .+...|.+.|+. |.++ .++...+ .|++.|.|...-.
T Consensus 26 ~~l~V~nl~~~---------~t~~~l~~~F~~--~G~i~~v~i~~~----~g~afV~f~~~~~ 73 (109)
T 1x4g_A 26 CTVYCGGIASG---------LTDQLMRQTFSP--FGQIMEIRVFPE----KGYSFVRFSTHES 73 (109)
T ss_dssp CEEEEECCSSC---------CCHHHHHHHHHH--HSCEEEEEEETT----TTEEEEEESSHHH
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEeCC----CCEEEEEECCHHH
Confidence 45778898864 367889999999 7765 4444443 7899999987543
No 225
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.35 E-value=11 Score=26.18 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=20.2
Q ss_pred EecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 34 EVSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 34 k~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
-....+|.|+.|+.. |..-..|..|-.
T Consensus 7 h~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2eom_A 7 GHGERGHRCSDCGKF---FLQASNFIQHRR 33 (46)
T ss_dssp CCCCSSCCCSSSCCC---CSSHHHHHHHHH
T ss_pred CCCCCCcCCCCCCCe---eCChHHHHHHHH
Confidence 346778999999754 667778888854
No 226
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.27 E-value=25 Score=29.21 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=33.3
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCC--cccccc-cCCC--CCceeEEEEeCCC
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNP--LKVHPL-WSRR--GHSGFAVVEFYKD 181 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p--~kv~~l-~g~~--Gh~g~aVV~F~~d 181 (630)
.+.|-|+|.. .+...|++.|+. |.+ ..+... .... -+.|+|.|.|.+.
T Consensus 10 ~l~V~nLp~~---------~t~~~l~~~f~~--~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~ 62 (109)
T 2dis_A 10 RLFIGGIPKM---------KKREEILEEIAK--VTEGVLDVIVYASAADKMKNRGFAFVEYESH 62 (109)
T ss_dssp EEEEECCCTT---------SCHHHHHHHHHH--HSTTEEEEECCSSSCTTTTTCCEEEEEESSH
T ss_pred EEEEeCCCCc---------CCHHHHHHHHHH--hcCCceEEEEEccCCCCCCcCcEEEEEecCH
Confidence 4667888764 367889999999 754 345444 2222 4789999999863
No 227
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=45.26 E-value=11 Score=27.16 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=19.0
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.+.+|.||.|+.. |.....|..|-.
T Consensus 29 ~~~~~~C~~C~~~---f~~~~~l~~H~~ 53 (57)
T 3uk3_C 29 GEKPYKCEFCEYA---AAQKTSLRYHLE 53 (57)
T ss_dssp CCCCEECSSSSCE---ESSHHHHHHHHH
T ss_pred CCCCcCCCCCcch---hCCHHHHHHHHH
Confidence 4678999999744 667788888854
No 228
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.23 E-value=11 Score=26.02 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=20.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2yrj_A 8 TGEKPYRCGECGKA---FAQKANLTQHQRI 34 (46)
T ss_dssp CCCCCEECSSSCCE---ESSHHHHHHHHTT
T ss_pred CCCCCeECCCCCCc---cCCHHHHHHHHHH
Confidence 46778999999744 6777888888543
No 229
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.06 E-value=8.5 Score=26.81 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=19.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
....+|.|++|+.. |..-..|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eoz_A 8 TGEKPYSCNVCGKA---FVLSAHLNQHLR 33 (46)
T ss_dssp SSCCSEEETTTTEE---ESSHHHHHHHHH
T ss_pred CCCCCeECcccChh---hCCHHHHHHHHH
Confidence 46778999999744 667777888844
No 230
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.04 E-value=11 Score=25.97 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=20.4
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eop_A 8 TGEKPHECRECGKS---FSFNSQLIVHQRI 34 (46)
T ss_dssp CCCCSCBCTTTCCB---CSSHHHHHHHHTT
T ss_pred CCCCCeeCCCCCch---hCCHHHHHHHHHH
Confidence 46678999999744 7777888888543
No 231
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.04 E-value=12 Score=26.04 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=20.0
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.+..+|.|+.|+.. |.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em6_A 8 MGEKCYKCDVCGKE---FSQSSHLQTHQR 33 (46)
T ss_dssp CCCCCCBCSSSCCB---CSSHHHHHHHHT
T ss_pred CCCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 46778999999744 667788888854
No 232
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.97 E-value=12 Score=25.80 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=20.9
Q ss_pred EecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 34 EVSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 34 k~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
-.++.+|.|+.|+.. |..-..|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (47)
T 2epx_A 7 GTGKKPYECIECGKA---FIQNTSLIRHWR 33 (47)
T ss_dssp CCCCCSBCCSSSCCC---BSSHHHHHHHHT
T ss_pred cCCCCCEECCccCch---hCChHHHHHHhH
Confidence 346778999999754 777888888865
No 233
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.79 E-value=11 Score=26.17 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=20.1
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ytj_A 8 TGEKPYICAECGKA---FTIRSNLIKHQKI 34 (46)
T ss_dssp SSCCSEECSSSCCE---ESSHHHHHHHHHH
T ss_pred CCCcCeECCCCChh---hCCHHHHHHHHHH
Confidence 35678999999754 6777788888543
No 234
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=44.78 E-value=25 Score=32.13 Aligned_cols=48 Identities=17% Similarity=0.045 Sum_probs=33.3
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCC
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKD 181 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~d 181 (630)
.++.|.|+|.. .+...|.+.|+.-||....++.+.. ..|++.|+|.+.
T Consensus 121 ~~l~v~nl~~~---------~~~~~l~~~f~~~G~~v~~v~i~~~---~~g~afV~f~~~ 168 (198)
T 1qm9_A 121 ATLHLSNIPPS---------VSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSV 168 (198)
T ss_dssp CEEEECCCCTT---------CCHHHHHHHHHHTTSCCCEEEESST---TSSCEEEECSSH
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHHcCCCceEEEEEeC---CCcEEEEEeCCH
Confidence 45667787764 3568899999994444455655443 368999999763
No 235
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.69 E-value=9.9 Score=26.36 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=20.4
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2yti_A 8 TGEKPYKCNECGKV---FTQNSHLARHRGI 34 (46)
T ss_dssp SCCCTTCCSSSCCC---CSSHHHHHHHHTT
T ss_pred CCCcCeECCCCCcc---cCChhHHHHHhHh
Confidence 45778999999754 6777888888543
No 236
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.66 E-value=12 Score=26.08 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=20.3
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eoh_A 8 SGKKPYECKECRKT---FIQIGHLNQHKRV 34 (46)
T ss_dssp CCSCSCCCSSSCCC---CSSHHHHHHHHHH
T ss_pred CCCCCcCCCCcCch---hCCHHHHHHHHHH
Confidence 45678999999754 6677788888543
No 237
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.66 E-value=11 Score=26.10 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=20.0
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2yto_A 8 TGEKPYKCSDCGKA---FTRKSGLHIHQQS 34 (46)
T ss_dssp CSCCCEECSSSCCE---ESSHHHHHHHHHH
T ss_pred CCCCCEECcccCCc---cCCHhHHHHHHHH
Confidence 46778999999744 6677778888543
No 238
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.62 E-value=11 Score=26.16 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=19.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.+..+|.|+.|+.. |..-..|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em2_A 8 SGEKPFKCKECGKA---FRQNIHLASHLR 33 (46)
T ss_dssp CCCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCEECCcCCch---hCCHHHHHHHHH
Confidence 46778999999744 666777877854
No 239
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=44.59 E-value=9 Score=31.19 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=32.8
Q ss_pred eEEEeccccccCCCCcccccChhhHH----HHHHhCCCCCcccccccCCCCCceeEEEEeCCCh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLR----DEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDW 182 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~----~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw 182 (630)
++.|-|+|.. .+...|+ +.|+. |.++....+.....+.|++.|.|.+.-
T Consensus 10 ~l~V~nLp~~---------~~~~~l~~~l~~~f~~--~G~i~~v~i~~~~~~~g~afV~f~~~~ 62 (97)
T 1nu4_A 10 TIYINNLNEK---------IKKDELKKSLHAIFSR--FGQILDILVSRSLKMRGQAFVIFKEVS 62 (97)
T ss_dssp EEEEESCCTT---------SCHHHHHHHHHHHHGG--GSCEEEEECCHHHHHTTCEEEEESSHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHHHHh--CCCEEEEEEEcCCCcCcEEEEEeCCHH
Confidence 5678888764 3567777 89999 877543333222235689999998543
No 240
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.52 E-value=11 Score=26.19 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=20.4
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eq2_A 8 TGGKPYQCNECGKA---FSQTSKLARHQRV 34 (46)
T ss_dssp SSSCSSSCCSSCCC---CSSHHHHHHHGGG
T ss_pred CCCCCeECCCCCcc---cCCHHHHHHHHHH
Confidence 45678999999754 7777888888543
No 241
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=44.52 E-value=26 Score=28.97 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=32.0
Q ss_pred eEEEecccc-ccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCCh
Q 038527 123 VGIVANIKT-QRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDW 182 (630)
Q Consensus 123 mgII~Ni~~-e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw 182 (630)
.+.|-|++. . .+...|.+.|+. |.++....+ ..|++.|.|.+.-
T Consensus 24 ~l~V~nLp~~~---------~t~~~L~~~F~~--~G~v~~v~i-----~~g~afV~f~~~~ 68 (97)
T 2xnq_A 24 RLFIGNLPLKN---------VSKEDLFRIFSP--YGHIMQINI-----KNAFGFIQFDNPQ 68 (97)
T ss_dssp EEEEESCCSSC---------CCHHHHHHHHGG--GSCEEEEEE-----CSSEEEEEESSHH
T ss_pred EEEEeCCCccc---------CCHHHHHHHHHh--cCCEEEEEE-----eCCEEEEEECCHH
Confidence 456788875 3 367889999999 877543333 3789999998744
No 242
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=44.50 E-value=25 Score=29.36 Aligned_cols=63 Identities=16% Similarity=0.200 Sum_probs=38.4
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
-++.|-|+|.. .++. ...+...|++.|+. |.++ .+........+.|++.|.|.+.-.. ..|+.
T Consensus 16 ~~l~V~nLp~~-~~~~--~~~t~~~l~~~F~~--~G~v~~v~i~~~~g~~~G~afV~f~~~~~A-~~Ai~ 79 (105)
T 2nlw_A 16 SVIVVDNVPQV-GPDR--LEKLKNVIHKIFSK--FGKITNDFYPEEDGKTKGYIFLEYASPAHA-VDAVK 79 (105)
T ss_dssp SEEEEESCCCC-CTTT--TTHHHHHHHHHHGG--GSCEEEEECCCBTTBSCCEEEEEECSSSHH-HHHHH
T ss_pred CEEEEeCCCcc-hhhh--hHHHHHHHHHHHhc--CCCEEEEEeeCCCCCeeeEEEEEECCHHHH-HHHHH
Confidence 35778898864 2110 01145789999999 8875 4444322234679999999875543 34443
No 243
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=44.12 E-value=34 Score=30.82 Aligned_cols=53 Identities=13% Similarity=0.212 Sum_probs=38.8
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC-C-CCceeEEEEeCCChhh
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR-R-GHSGFAVVEFYKDWAG 184 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~-~-Gh~g~aVV~F~~dw~G 184 (630)
+..+.|-|+|.. .+...|.+.|+. |.++ .++..+++ . .+.|++.|.|.+.-..
T Consensus 114 ~~~l~v~nl~~~---------~~~~~l~~~f~~--~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a 169 (198)
T 2yh0_A 114 AHKLFIGGLPNY---------LNDDQVKELLTS--FGPLKAFNLVKDSATGLSKGYAFCEYVDINVT 169 (198)
T ss_dssp CCEEEEECCCTT---------CCHHHHHHHHHT--BSCEEEEEEEECTTTCSEEEEEEEEESSSSHH
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHH--cCCccEEEEeecCCCCCcceEEEEEECCHHHH
Confidence 466778888764 257889999999 8775 66666664 3 3589999999876543
No 244
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.05 E-value=11 Score=26.00 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=20.4
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.++.+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2epw_A 8 TGEKPCKCTECGKA---FCWKSQLIMHQRT 34 (46)
T ss_dssp CCCCSEECSSSCCE---ESSSHHHHHHHHH
T ss_pred CCCCCeeCCCCCCc---cCCHHHHHHHHHH
Confidence 46678999999744 7777888888544
No 245
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.90 E-value=11 Score=26.07 Aligned_cols=26 Identities=19% Similarity=0.338 Sum_probs=19.0
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
..+.+|.|+.|+.. |.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2en3_A 8 TGEKPFQCKECGMN---FSWSCSLFKHLR 33 (46)
T ss_dssp CCCCSEECSSSCCE---ESSSHHHHHHHH
T ss_pred CCCCCeeCcccChh---hCCHHHHHHHHH
Confidence 45678999999744 666677777743
No 246
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.80 E-value=12 Score=26.08 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=19.6
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
....+|.|+.|+.. |.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2em4_A 8 TGQRPYECIECGKA---FKTKSSLICHRR 33 (46)
T ss_dssp CCSSSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCcCcCCCCCCCc---cCCHHHHHHHHH
Confidence 46778999999744 666777888854
No 247
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.61 E-value=11 Score=26.12 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=20.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
..+.+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eoy_A 8 QKEKCFKCNKCEKT---FSCSKYLTQHERI 34 (46)
T ss_dssp CCSCCEECSSSCCE---ESSSHHHHHHHTT
T ss_pred CCCCCEECcCCCCc---CCCHHHHHHHHHH
Confidence 46678999999744 6677888888543
No 248
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=43.58 E-value=23 Score=30.97 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=39.0
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC-CC-CceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR-RG-HSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~-~G-h~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.+.|-|+|.. .+...|.+.|+. |.+. .++....+ .| +.|++.|.|.+. ..-..|+.
T Consensus 5 ~l~v~nlp~~---------~~~~~l~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~a~~ 63 (168)
T 1b7f_A 5 NLIVNYLPQD---------MTDRELYALFRA--IGPINTCRIMRDYKTGYSYGYAFVDFTSE-MDSQRAIK 63 (168)
T ss_dssp EEEEECCCTT---------CCHHHHHHHHHT--TSCEEEEECCEETTTTEECSEEEEEESSH-HHHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--cCCeeEEEEEEeCCCCccceEEEEEECCH-HHHHHHHH
Confidence 4678888875 367889999999 8875 55555543 23 679999999854 33455554
No 249
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.56 E-value=12 Score=25.86 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=20.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ep1_A 8 TGEKPYECSDCGKS---FIKKSQLHVHQRI 34 (46)
T ss_dssp SSCCSSCCSSSCCC---CSSHHHHHHHHGG
T ss_pred CCCCCcCCCCCCch---hCCHHHHHHHHHH
Confidence 46778999999754 6677888888544
No 250
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=43.56 E-value=26 Score=28.69 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=34.5
Q ss_pred eEEEecccc-ccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKT-QRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~-e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.+.|-|+|. . .+...|.+.|+. |.++....+ +.|++.|.|.+. ..-..|+.
T Consensus 12 ~l~V~nlp~~~---------~t~~~l~~~F~~--~G~v~~v~i-----~~g~afV~f~~~-~~A~~A~~ 63 (96)
T 2kvi_A 12 RLFIGNLPLKN---------VSKEDLFRIFSP--YGHIMQINI-----KNAFGFIQFDNP-QSVRDAIE 63 (96)
T ss_dssp EEEEESSTTSC---------CCHHHHHHHHTT--TCCCCEEEE-----ETTEEEEEESCH-HHHHHHHH
T ss_pred EEEEeCCCccc---------CCHHHHHHHHHh--cCCEEEEEE-----eCCEEEEEECCH-HHHHHHHH
Confidence 456788875 3 367889999999 887644333 368999999763 33344443
No 251
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=43.48 E-value=28 Score=30.22 Aligned_cols=50 Identities=20% Similarity=0.452 Sum_probs=36.3
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCCh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDW 182 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw 182 (630)
..+.|-|+|.. .+...|.+.|+. |.+. .++...++ .-++|++.|.|.+.-
T Consensus 88 ~~l~v~nl~~~---------~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~~ 140 (166)
T 3md3_A 88 FNLFVGDLNVN---------VDDETLRNAFKD--FPSYLSGHVMWDMQTGSSRGYGFVSFTSQD 140 (166)
T ss_dssp EEEEEESCCTT---------CCHHHHHHHHTT--STTEEEEEEEECTTTCCEEEEEEEEESCHH
T ss_pred ceEEECCCCCC---------CCHHHHHHHHhc--cCCeeEEEEEecCCCCCcceEEEEEeCCHH
Confidence 46778898765 367889999998 8874 55555543 345789999998643
No 252
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.46 E-value=11 Score=26.19 Aligned_cols=27 Identities=22% Similarity=0.397 Sum_probs=20.7
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2em7_A 8 TGEKPYKCEECGKG---FICRRDLYTHHMV 34 (46)
T ss_dssp SCCCSEECSSSCCE---ESCHHHHHHHGGG
T ss_pred CCCcCccCCCccch---hCCHHHHHHHHHH
Confidence 45678999999743 7778888888544
No 253
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.40 E-value=12 Score=25.90 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=21.0
Q ss_pred EecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 34 EVSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 34 k~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
-.+..+|.|+.|+.. |.....|..|-..
T Consensus 7 H~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2ytn_A 7 GTGKKPYKCNECGKV---FTQNSHLARHRGI 34 (46)
T ss_dssp CSCCSSCBCTTTCCB---CSSHHHHHHHGGG
T ss_pred CCCCcCeECCCCCCe---eCCHHHHHHHhhh
Confidence 346788999999744 7777888888543
No 254
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.40 E-value=12 Score=25.99 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=20.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ep2_A 8 TGEKPYECSICGKS---FTKKSQLHVHQQI 34 (46)
T ss_dssp SCCCSEECSSSCCE---ESSHHHHHHHHHT
T ss_pred CCCcCcCCCCCCcc---cCCHHHHHHHHHH
Confidence 46778999999744 7777888888543
No 255
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.37 E-value=12 Score=25.90 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=20.2
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |.....|..|...
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eoq_A 8 TGEKPFKCDICGKS---FCGRSRLNRHSMV 34 (46)
T ss_dssp SSSCSCCCSSSCCC---CSSHHHHHHHHHH
T ss_pred CCCCCcCCCcCCch---hCCHHHHHHHHHH
Confidence 45678999999754 6777888888543
No 256
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=43.33 E-value=11 Score=29.24 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=17.0
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
|+.+|.|+.|+.. |.....|..|-.
T Consensus 1 SEKpy~C~~C~k~---F~~~~~L~~H~~ 25 (60)
T 4gzn_C 1 SERPFFCNFCGKT---YRDASGLSRHRR 25 (60)
T ss_dssp CCCCEECTTTCCE---ESSHHHHHHHHH
T ss_pred CCCCccCCCCCCE---eCCHHHHHHHHH
Confidence 4678888888743 666667777744
No 257
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.25 E-value=12 Score=26.03 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=20.7
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2em5_A 8 SSTKSHQCHECGRG---FTLKSHLNQHQRI 34 (46)
T ss_dssp CCSCSEECSSSCCE---ESSHHHHHHHHTT
T ss_pred CCCCCeECCcCCCc---cCCHHHHHHHHHH
Confidence 46778999999744 7778888888543
No 258
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.25 E-value=14 Score=25.40 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=19.7
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |.....|..|-..
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 32 (43)
T 2yrm_A 6 SGNGAFFCNECDCR---FSEEASLKRHTLQ 32 (43)
T ss_dssp SSSCCBCCSSSCCC---BSSHHHHHHHHHH
T ss_pred CCCCCEECCCCCCe---eCChHHHHHHHHh
Confidence 35678999999754 6677778888543
No 259
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.22 E-value=11 Score=26.19 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=20.3
Q ss_pred EEecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 33 VEVSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 33 Vk~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
+-.+..+|.|+.|+.. |..-..|..|-.
T Consensus 6 ~h~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytm_A 6 SGTGEKPYKCMECGKA---FGDNSSCTQHQR 33 (46)
T ss_dssp CCSSCCSSSBTTTTBC---CSSHHHHHHHHH
T ss_pred CCCCCCCcCCCCCCch---hCCHHHHHHHHH
Confidence 3356778999999754 666777777743
No 260
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.19 E-value=9.1 Score=26.47 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=20.3
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eq3_A 8 TGEKPYECNQCGKA---FSVRSSLTTHQAI 34 (46)
T ss_dssp CCCCSSEETTTTEE---CSSHHHHHHHHTT
T ss_pred CCCCCeECCCCChh---hCCHHHHHHHHHH
Confidence 45678999999744 6777888888543
No 261
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=43.17 E-value=1.1e+02 Score=33.60 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=39.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhcc-CCccccc--------eeecC
Q 038527 429 EENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEG-RTRATIG--------VKRMG 499 (630)
Q Consensus 429 ~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~~l~~~-~~~~~Ig--------iKrmG 499 (630)
++-.+++..+.+|.++|.+.++++ .++++....++-.+..+ ....+|| |++-|
T Consensus 71 ~~~~~l~~~~~~l~~~i~~le~~~------------------~~~~~~~~~~l~~iPN~~~~~vP~g~~e~~n~~v~~~g 132 (485)
T 3qne_A 71 EDAKDLIAEKEKLSNEKKEIIEKE------------------AEADKNLRSKINQVGNIVHESVVDSQDEENNELVRTWT 132 (485)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHTTSCCCCCTTSCCCSCGGGCEEEEEEC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhCCCCCCccCCCCCCccCCEEEEEeC
Confidence 334567778888888887777776 35666666777777777 4555666 89999
Q ss_pred CCC
Q 038527 500 EID 502 (630)
Q Consensus 500 eld 502 (630)
+..
T Consensus 133 ~~~ 135 (485)
T 3qne_A 133 PEN 135 (485)
T ss_dssp CTT
T ss_pred CCC
Confidence 753
No 262
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=49.18 E-value=5 Score=24.70 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=16.3
Q ss_pred CeeeccCCCCCCccccchHHHHhhhh
Q 038527 38 TAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.+|.|+.|+.. |.....|..|-.
T Consensus 2 k~~~C~~C~k~---f~~~~~l~~H~~ 24 (30)
T 2lvr_A 2 KPYVCIHCQRQ---FADPGALQRHVR 24 (30)
Confidence 47999999744 556667777743
No 263
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.10 E-value=12 Score=25.87 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=20.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2enc_A 8 SGEKPFKCEECGKG---FYTNSQCYSHQRS 34 (46)
T ss_dssp CCCCSEECSSSCCE---ESSHHHHHHHHHH
T ss_pred CCCCCcCCCCCCCc---CCChHHHHHHHHH
Confidence 46778999999744 7777888888543
No 264
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.95 E-value=13 Score=25.78 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=19.1
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
....+|.|+.|+.. |.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2emz_A 8 SGERPFKCNECGKG---FGRRSHLAGHLR 33 (46)
T ss_dssp SCCCSCCCSSSCCC---CSSHHHHHHHHH
T ss_pred CCCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 45678999999754 666777777743
No 265
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=42.94 E-value=13 Score=24.20 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=17.2
Q ss_pred eeeccCCCCCCccccchHHHHhhhhc
Q 038527 39 AYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 39 ~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
+|.|+.|+.. |.....|..|-..
T Consensus 2 p~~C~~C~k~---F~~~~~L~~H~~~ 24 (33)
T 1rim_A 2 KFACPECPKR---FMRSDHLSKHITL 24 (33)
T ss_dssp CCCCSSSCCC---CSSHHHHHHHHHH
T ss_pred cccCCCCCch---hCCHHHHHHHHHH
Confidence 6899999754 6677788888543
No 266
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=42.92 E-value=25 Score=30.29 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=17.8
Q ss_pred CceEEecCCeeeccCCCCCCccccchHHHHhhhhcc
Q 038527 30 DLKVEVSETAYRCPFCRGKKETDYLYKELLQHASDV 65 (630)
Q Consensus 30 ~~kVk~~~~~~~CP~C~~kkK~~y~~~~LLqHA~gv 65 (630)
++.|....+.|+|-.|+. ..+.-+|+++..+.
T Consensus 49 Sf~V~~~k~~~~Cf~cg~----gGd~i~fv~~~~~~ 80 (103)
T 1d0q_A 49 SFSVSPEKQIFHCFGCGA----GGNAFTFLMDIEGI 80 (103)
T ss_dssp CEEEETTTTEEEETTTCC----EECHHHHHHHHHTC
T ss_pred cEEEEcCCCEEEECCCCC----CCCHHHHHHHHhCC
Confidence 345554455566666642 24566677766654
No 267
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.84 E-value=35 Score=28.02 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=38.5
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHh-CCCCCcccccccCCCC-CceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRS-KGFNPLKVHPLWSRRG-HSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~-~GF~p~kv~~l~g~~G-h~g~aVV~F~~dw~Gf~nA~~ 190 (630)
..+.|-|++.. .+...|.+.|+. -| ....++...++.| +.|++.|.|.+.-. -..|+.
T Consensus 10 ~~l~V~nLp~~---------~t~~~l~~~F~~~~G-~v~~v~i~~~~~g~~~g~afV~f~~~~~-a~~A~~ 69 (104)
T 2dhg_A 10 YSLFVGDLTPD---------VDDGMLYEFFVKVYP-SCRGGKVVLDQTGVSKGYGFVKFTDELE-QKRALT 69 (104)
T ss_dssp CCEEEECCCTT---------CCHHHHHHHHHHHCT-TEEEEEEEECTTCCEEEEEEEEESCHHH-HHHHHH
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHHhCC-CeEEEEEEECCCCCccceEEEEECCHHH-HHHHHH
Confidence 34678888764 356789999986 44 2356666666555 58999999986443 344444
No 268
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.82 E-value=8.4 Score=26.38 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=20.6
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
..+.+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (44)
T 2eoj_A 8 TGENPYECCECGKV---FSRKDQLVSHQKT 34 (44)
T ss_dssp SSCCSCEETTTTEE---CSSHHHHHHHHTT
T ss_pred CCCcCeeCCCCCCc---cCCHHHHHHHHHH
Confidence 45678999999744 7777888888554
No 269
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=42.78 E-value=29 Score=30.33 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=36.7
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCC
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKD 181 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~d 181 (630)
+..+.|-|+|.. .+...|.+.|+. |.+. .+....++ ..++|++.|.|.+.
T Consensus 89 ~~~l~v~nl~~~---------~t~~~l~~~f~~--~G~i~~~~i~~~~~~~~~~g~afV~f~~~ 141 (168)
T 1b7f_A 89 DTNLYVTNLPRT---------ITDDQLDTIFGK--YGSIVQKNILRDKLTGRPRGVAFVRYNKR 141 (168)
T ss_dssp TCEEEEESCCTT---------CCHHHHHHHHTS--SSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred CCCEEEeCCCCC---------CCHHHHHHhhhc--CCcEEEEEEEEcCCCCCcceEEEEEECCH
Confidence 356888998864 367889999999 8775 55555554 33579999999864
No 270
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.74 E-value=10 Score=26.28 Aligned_cols=27 Identities=15% Similarity=0.332 Sum_probs=20.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
..+.+|.|+.|+.. |.....|..|...
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (45)
T 2epu_A 8 TGQKPFECTHCGKS---FRAKGNLVTHQRI 34 (45)
T ss_dssp CSCCSEEETTTTEE---ESSHHHHHHHHTT
T ss_pred CCCcCccCCCCCCc---cCChHHHHHHHHH
Confidence 45678999999744 7777888888543
No 271
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.74 E-value=12 Score=25.85 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=20.4
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ene_A 8 TGEKPYKCNECGKV---FRHNSYLSRHQRI 34 (46)
T ss_dssp CCSSSEECSSSCCE---ESSHHHHHHHHTT
T ss_pred CCCCCeECCCCCch---hCChHHHHHHHhh
Confidence 45778999999744 6677888888543
No 272
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=42.69 E-value=37 Score=28.82 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=24.8
Q ss_pred HHHHH-HhCCCCCc-ccccccCCCC-CceeEEEEeCCChhh
Q 038527 147 LRDEF-RSKGFNPL-KVHPLWSRRG-HSGFAVVEFYKDWAG 184 (630)
Q Consensus 147 L~~~~-~~~GF~p~-kv~~l~g~~G-h~g~aVV~F~~dw~G 184 (630)
|++.| +. |.++ .+.+..+..| ..|++.|.|.+.-..
T Consensus 43 l~~~f~~~--~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 43 VFTEMEEK--YGEVEEMNVCDNLGDHLVGNVYVKFRREEDA 81 (104)
T ss_dssp HHHHHHHH--TCCEEEEEECCSSSSSSEEEEEEEESCHHHH
T ss_pred HHHHhhcc--CCceEEEEEEeCCCCCccEEEEEEECCHHHH
Confidence 33444 88 8875 6666665555 489999999876554
No 273
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=42.65 E-value=9 Score=29.40 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=17.2
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
..+.+|.|++|+.. |.....|..|-.
T Consensus 10 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 35 (72)
T 1x6e_A 10 SGEKPYGCVECGKA---FSRSSILVQHQR 35 (72)
T ss_dssp TTCCCEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCccCCCCCCc---cCCHHHHHHHHH
Confidence 45677888888643 556666777644
No 274
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.53 E-value=13 Score=25.77 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=20.4
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2eq0_A 8 TGEKPYKCHECGKV---FRRNSHLARHQLI 34 (46)
T ss_dssp TCCCCEECTTTCCE---ESSHHHHHHHHTT
T ss_pred CCCCCeECCCCCch---hCCHHHHHHHHHH
Confidence 45678999999744 6777888888543
No 275
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.52 E-value=12 Score=25.84 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=19.1
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
....+|.|+.|+.. |.....|..|-.
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2eor_A 8 TGEKPYNCEECGKA---FIHDSQLQEHQR 33 (46)
T ss_dssp SCCCSEECTTTCCE---ESSHHHHHHHHH
T ss_pred CCCcCccCCCCCCC---cCCHHHHHHHHH
Confidence 45678999999744 666777777743
No 276
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.50 E-value=13 Score=25.51 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=19.8
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |.....|..|-..
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 32 (44)
T 2emx_A 6 SGEKPFGCSCCEKA---FSSKSYLLVHQQT 32 (44)
T ss_dssp SSCCCEECSSSSCE---ESSHHHHHHHHHH
T ss_pred CCCcCccCCCCCcc---cCCHHHHHHHHHH
Confidence 35678999999744 6677778888543
No 277
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.22 E-value=12 Score=25.88 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=20.3
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.++.+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2yso_A 8 SREKSHQCRECGEI---FFQYVSLIEHQVL 34 (46)
T ss_dssp SCCCCEECTTTCCE---ESSHHHHHHHHHH
T ss_pred CCCCCEEccccChh---hCCHHHHHHHHHH
Confidence 46678999999754 6777788888543
No 278
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=42.12 E-value=13 Score=25.63 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=20.7
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2el4_A 8 TGVKPYGCSQCAKT---FSLKSQLIVHQRS 34 (46)
T ss_dssp CCCCSEECSSSSCE---ESSHHHHHHHGGG
T ss_pred CCCCceECCCCCch---hCCHHHHHHHHHH
Confidence 45678999999744 7778888888544
No 279
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.96 E-value=12 Score=25.86 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=19.3
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.++.+|.|+.|+.. |.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2emh_A 8 TGERPYICTVCGKA---FTDRSNLIKHQK 33 (46)
T ss_dssp SCCCSEECTTTCCE---ESSHHHHHHHHH
T ss_pred CCCCCcCCCCCCch---hCCHHHHHHHHH
Confidence 45678999999744 666777777743
No 280
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.89 E-value=13 Score=25.82 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=19.7
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.++.+|.|+.|+.. |.....|..|..
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2eoo_A 8 SGERPYGCNECGKN---FGRHSHLIEHLK 33 (46)
T ss_dssp SCCCCEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCEEccccCcc---cCCHHHHHHHHH
Confidence 45678999999744 677778888854
No 281
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.79 E-value=13 Score=25.60 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=20.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eq4_A 8 TGEKLYNCKECGKS---FSRAPCLLKHERL 34 (46)
T ss_dssp SCCCCCCBTTTTBC---CSCHHHHHHHHHH
T ss_pred CCCCCeECCCCCCc---cCchHHHHHHHHh
Confidence 46678999999754 6777788888543
No 282
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=41.75 E-value=14 Score=25.67 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=19.3
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
....+|.|+.|+.. |..-..|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~ 33 (46)
T 2emj_A 8 TGEKPFECAECGKS---FSISSQLATHQR 33 (46)
T ss_dssp CCCCSEECSSSSCE---ESSHHHHHHHHH
T ss_pred CCCCCEECCCCCcc---cCCHHHHHHHHH
Confidence 45678999999744 666777777754
No 283
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=41.69 E-value=37 Score=27.72 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=33.3
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWA 183 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~ 183 (630)
..+.|-|+|.. .+...|++.|+. |.++....+-. +.|++.|.|...-.
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~i~~v~~~~---~kg~afV~f~~~~~ 63 (99)
T 2cpj_A 16 SRLFVGNLPPD---------ITEEEMRKLFEK--YGKAGEVFIHK---DKGFGFIRLETRTL 63 (99)
T ss_dssp TEEEEESCCTT---------CCHHHHHHHTST--TCCCSEEEEET---TTTEEEEECSSSHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHhh--cCCeEEEEEec---CCCEEEEEECCHHH
Confidence 36778898864 357889999999 87653332221 26899999987544
No 284
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.68 E-value=13 Score=25.75 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=19.9
Q ss_pred EecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 34 EVSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 34 k~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
-.++.+|.|+.|+.. |.....|..|-.
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2yu8_A 7 GTGEKPYKCNECGKV---FTQNSHLARHRR 33 (46)
T ss_dssp CCCCSSEECSSSCCE---ESSSHHHHHHTH
T ss_pred CCCCCCeECCcCCch---hCCHHHHHHHHH
Confidence 346788999999744 666777777743
No 285
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.65 E-value=15 Score=30.82 Aligned_cols=49 Identities=18% Similarity=0.170 Sum_probs=33.1
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcc---cccccCCCCCceeEEEEeCCC
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLK---VHPLWSRRGHSGFAVVEFYKD 181 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~k---v~~l~g~~Gh~g~aVV~F~~d 181 (630)
.++.|-|+|.. .+...|.+.|+. |.++. +..-.....+.|++.|.|.+.
T Consensus 26 ~~l~V~nLp~~---------~t~~~l~~~f~~--~G~v~~~~~~~~~~~g~~~g~afV~f~~~ 77 (115)
T 2cpx_A 26 KVLYLKNLSPR---------VTERDLVSLFAR--FQEKKGPPIQFRMMTGRMRGQAFITFPNK 77 (115)
T ss_dssp SEEEEECCCTT---------CCHHHHHHHTHH--HHHSSSSCCEEEEECSSSCSEEEEECSSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHH--hCCccceEEEEEcCCCccceEEEEEECCH
Confidence 46778898864 366889999999 76642 111112445679999999864
No 286
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=47.73 E-value=5.5 Score=24.06 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=14.8
Q ss_pred eeeccCCCCCCccccchHHHHhhh
Q 038527 39 AYRCPFCRGKKETDYLYKELLQHA 62 (630)
Q Consensus 39 ~~~CP~C~~kkK~~y~~~~LLqHA 62 (630)
+|.|+.|+.. |..-..|..|-
T Consensus 2 p~~C~~C~k~---f~~~~~l~~H~ 22 (26)
T 2lvu_A 2 PYVCERCGKR---FVQSSQLANHI 22 (26)
Confidence 6899999754 55556676773
No 287
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.61 E-value=13 Score=25.74 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=20.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2eml_A 8 TGEKPYECSVCGKA---FSHRQSLSVHQRI 34 (46)
T ss_dssp SSCCSEECSSSCCE---ESSHHHHHHHHGG
T ss_pred CCCCCeeCCCcCCc---cCCHHHHHHHHHH
Confidence 46778999999744 6777888888543
No 288
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=41.52 E-value=30 Score=30.29 Aligned_cols=50 Identities=14% Similarity=0.285 Sum_probs=36.6
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWA 183 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~ 183 (630)
.+.|-|+|.. .+...|.+.|+. |.+. .++...++ .-+.|++.|.|.+.-.
T Consensus 5 ~l~v~nLp~~---------~t~~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~ 57 (167)
T 2cjk_A 5 KMFIGGLNWD---------TTEDNLREYFGK--YGTVTDLKIMKDPATGRSRGFGFLSFEKPSS 57 (167)
T ss_dssp EEEECSCCTT---------CCHHHHHHHHTT--TCCEEEEECCCCTTTSSCCSCEEEEESSTHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--CCCEEEEEEEECCCCCCccceEEEEEccHHH
Confidence 5677888865 367889999999 8764 55555553 3477999999987543
No 289
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.44 E-value=9.6 Score=26.16 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=20.3
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.++.+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~~~~~C~~C~k~---F~~~~~L~~H~~~ 34 (44)
T 2eox_A 8 TDSKSYNCNECGKA---FTRIFHLTRHQKI 34 (44)
T ss_dssp CCCCCEEETTTTEE---ESSSHHHHTTHHH
T ss_pred CCCCCeECcccCcc---cCCHHHHHHHHHH
Confidence 46788999999744 6777788888543
No 290
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.32 E-value=14 Score=25.54 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=21.4
Q ss_pred EEecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 33 VEVSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 33 Vk~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
+-....+|.|+.|+.. |.....|..|-..
T Consensus 6 ~H~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2epz_A 6 SGTGEKPFDCIDCGKA---FSDHIGLNQHRRI 34 (46)
T ss_dssp SCCCCCSBCCTTTCCC---BSSHHHHHHHHTT
T ss_pred CcCCCCCeECCCCCce---eCCHHHHHHHHHH
Confidence 3346778999999754 7777888888543
No 291
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=41.15 E-value=1.8e+02 Score=27.45 Aligned_cols=62 Identities=10% Similarity=0.073 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHH
Q 038527 382 LAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQS 461 (630)
Q Consensus 382 L~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~ 461 (630)
.+..-+.+...+..+|.+|+..|..|.++-- .+...+..|+-++..-++.+..++.-|+.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e--------------------~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTE--------------------RLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666777777777777777665421 13344555555555555666666666666
Q ss_pred HH
Q 038527 462 LI 463 (630)
Q Consensus 462 L~ 463 (630)
||
T Consensus 129 LV 130 (152)
T 3a7p_A 129 LV 130 (152)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 292
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=41.14 E-value=14 Score=26.59 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=20.2
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
...+|.|+.|+.. |.....|..|-..
T Consensus 26 ~~~~~~C~~C~~~---f~~~~~l~~H~~~ 51 (57)
T 1bbo_A 26 DVRPYHCTYCNFS---FKTKGNLTKHMKS 51 (57)
T ss_dssp SCCCEECSSSSCE---ESSHHHHHHHHHS
T ss_pred CCCCccCCCCCch---hcCHHHHHHHHHH
Confidence 4578999999744 7778889899654
No 293
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.08 E-value=14 Score=25.51 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=20.1
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2emy_A 8 TGENPYECHECGKA---FSRKYQLISHQRT 34 (46)
T ss_dssp CSSCCEECSSSCCE---ESSHHHHHHHHHH
T ss_pred CCCcCcCCCCCCcc---cCcHHHHHHHHHH
Confidence 46778999999744 6677778888543
No 294
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=41.04 E-value=1.5e+02 Score=31.23 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHhh--hHHhHHHhhhhhHHHhhc
Q 038527 382 LAQVHKEEKEKLRRKIIELQKGLDAKQA--LELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 382 L~e~hkrEKe~~~~kil~LEkqLd~kQ~--LELEi~qlkg~L~vmKh~ 427 (630)
++++-+.+. ++.+.-..|++||+.-|+ +.+|-|--.-.+-||-.|
T Consensus 385 ~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (471)
T 3mq9_A 385 ARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM 431 (471)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH
Confidence 333333333 455666677777777665 445555555666677665
No 295
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=40.95 E-value=26 Score=29.70 Aligned_cols=45 Identities=29% Similarity=0.383 Sum_probs=32.1
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCC
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKD 181 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~d 181 (630)
+-.+.|-|++.. .+...|.+.|+. |.++....+. .|++.|.|.+.
T Consensus 31 ~~~l~V~nLp~~---------~t~~~L~~~F~~--~G~i~~v~i~-----kg~afV~f~~~ 75 (108)
T 2jvo_A 31 NTRLFVRPFPLD---------VQESELNEIFGP--FGPMKEVKIL-----NGFAFVEFEEA 75 (108)
T ss_dssp CSEEEECSSCTT---------CCHHHHHHHHTT--TSCCCEEEEE-----TTEEEEECSSH
T ss_pred CCEEEEECCCCC---------CCHHHHHHHHHh--cCCEEEEEEE-----CCEEEEEECCH
Confidence 345668888764 356889999999 8775333332 78999999863
No 296
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=40.88 E-value=15 Score=25.39 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=20.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2em0_A 8 MGEKTWKCRECDMC---FSQASSLRLHQNV 34 (46)
T ss_dssp CCCCCCCCSSSCCC---CSSHHHHHHHGGG
T ss_pred CCCcCeECCCCCcc---cCCHHHHHHHHHH
Confidence 46778999999744 7777888888543
No 297
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=40.86 E-value=21 Score=31.61 Aligned_cols=49 Identities=27% Similarity=0.325 Sum_probs=36.5
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCC
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKD 181 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~d 181 (630)
..+.|-|+|.. .+...|.+.|+. |.++ .+....++ ..+.|++.|.|.+.
T Consensus 48 ~~l~V~nLp~~---------~te~~L~~~F~~--~G~i~~v~i~~~~~~g~~~G~afV~F~~~ 99 (135)
T 2lea_A 48 TSLKVDNLTYR---------TSPDTLRRVFEK--YGRVGDVYIPRDRYTKESRGFAFVRFHDK 99 (135)
T ss_dssp CCEEEECCCSS---------CHHHHHHHHHGG--GSCCSEEECCCCSSSSSCCSCCEEECSCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEEecCCCCccceEEEEEECCH
Confidence 46778898865 367889999999 7765 56555553 35789999999863
No 298
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.81 E-value=14 Score=25.71 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=20.8
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
..+.+|.|+.|+.. |.....|..|...
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ytq_A 8 AGEKPYGCSECGKA---FSSKSYLIIHMRT 34 (46)
T ss_dssp SCCCSCBCSSSCCB---CSCHHHHHHHHTT
T ss_pred CCCCCcCCCccChh---hCChHHHHHHHHH
Confidence 46778999999754 7777888888554
No 299
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.78 E-value=13 Score=25.69 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=19.9
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.++.+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ytk_A 8 SGEKPYKCNECGKV---FTQNSHLTNHWRI 34 (46)
T ss_dssp SSSCSEECSSSCCE---ESSHHHHHHHHHH
T ss_pred CCCCCEeCCcCCCc---cCCHHHHHHHHHH
Confidence 46778999999744 6667777777543
No 300
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=46.85 E-value=5.8 Score=24.46 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=15.5
Q ss_pred eeeccCCCCCCccccchHHHHhhhh
Q 038527 39 AYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 39 ~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
+|.|+.|+.. |.....|..|-.
T Consensus 2 ~~~C~~C~k~---f~~~~~l~~H~~ 23 (29)
T 2lvt_A 2 PCQCVMCGKA---FTQASSLIAHVR 23 (29)
Confidence 6899999754 555666777743
No 301
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.58 E-value=14 Score=25.70 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=20.7
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.++.+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2emf_A 8 TGGKHFECTECGKA---FTRKSTLSMHQKI 34 (46)
T ss_dssp SSSCCEECSSSCCE---ESCHHHHHHHGGG
T ss_pred CCCCCeECCCCCch---hCCHHHHHHHHHH
Confidence 46678999999744 7777888888654
No 302
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=40.47 E-value=14 Score=26.43 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=19.4
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.+.+|.|+.|+. .|.....|..|-.
T Consensus 4 ~~kp~~C~~C~k---~F~~~~~L~~H~~ 28 (48)
T 3iuf_A 4 RDKPYACDICGK---RYKNRPGLSYHYA 28 (48)
T ss_dssp TTSCEECTTTCC---EESSHHHHHHHHH
T ss_pred CCcCEECCCcCc---ccCCHHHHHHHhh
Confidence 467899999973 3777788888865
No 303
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=40.42 E-value=14 Score=27.58 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=19.1
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
...+|.||+|+.. |..-..|..|-.
T Consensus 37 ~~~~~~C~~C~k~---f~~~~~L~~H~~ 61 (66)
T 2drp_A 37 NVKVYPCPFCFKE---FTRKDNMTAHVK 61 (66)
T ss_dssp SCCCEECTTTCCE---ESCHHHHHHHHH
T ss_pred CCcCeECCCCCCc---cCCHHHHHHHHH
Confidence 4678999999744 667778888854
No 304
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.34 E-value=14 Score=25.45 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=20.6
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |.....|..|...
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2en8_A 8 SGEKSHTCDECGKN---FCYISALRIHQRV 34 (46)
T ss_dssp CCCSSEECTTTCCE---ESSHHHHHHHHTT
T ss_pred CCCCCeECCCcCcc---cCCHHHHHHHHHH
Confidence 46778999999744 6777888888543
No 305
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=40.26 E-value=22 Score=30.03 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=37.7
Q ss_pred cceEEEeccccccCCCCcccccChhhHH---HHHHhCCCCCc-ccccccCCC-----CCceeEEEEeCCChhhhHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLR---DEFRSKGFNPL-KVHPLWSRR-----GHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~---~~~~~~GF~p~-kv~~l~g~~-----Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.-++.|-|+|.. .+...|. +.|+. |.++ .++...+.. .++|++.|.|...-. -..|+.
T Consensus 15 ~~~l~V~nLp~~---------~~~~~l~~~~~~F~~--~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~-A~~Ai~ 81 (111)
T 2cpi_A 15 KNLVFVVGLSQR---------LADPEVLKRPEYFGK--FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSED-ALRAIQ 81 (111)
T ss_dssp SSCEEEEEECTT---------TCCHHHHHSTTTTTT--TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHH-HHHHHH
T ss_pred CCEEEEECCCCC---------CCHHHHHHHHHHhhc--cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHH-HHHHHH
Confidence 345778898875 2456777 88998 8875 444444332 456899999986433 344444
No 306
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.20 E-value=14 Score=25.47 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=20.7
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
..+.+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ep0_A 8 TGEKPYKCDVCHKS---FRYGSSLTVHQRI 34 (46)
T ss_dssp TTCCSEECSSSCCE---ESSHHHHHHHHTT
T ss_pred CCCCCeeCcccCcc---cCChHHHHHHHHH
Confidence 46678999999744 7778888888543
No 307
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=40.11 E-value=15 Score=25.45 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=19.9
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2emk_A 8 TGEKPYECKECGKA---FSQTTHLIQHQRV 34 (46)
T ss_dssp SSSCSCBCSSSCCB---CSCHHHHHHHHHH
T ss_pred CCCCceECCCCCch---hCCHHHHHHHHHH
Confidence 45678999999754 6677778777543
No 308
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.09 E-value=14 Score=25.46 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=19.6
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.++.+|.|+.|+.. |.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2emm_A 8 TGERPHKCNECGKS---FIQSAHLIQHQR 33 (46)
T ss_dssp SCCCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCeeCCCCChh---hCCHHHHHHHHH
Confidence 45678999999744 667777888854
No 309
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=40.04 E-value=29 Score=30.18 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=38.8
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC--CCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR--GHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~--Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.+.|-|++.. .+...|++.|+. |.++ .++...++. -+.|+|.|.|.+.-. -..|+.
T Consensus 44 ~l~V~nLp~~---------~~~~~l~~~F~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~-a~~A~~ 102 (139)
T 1u6f_A 44 NLMVNYIPTT---------VDEVQLRQLFER--YGPIESVKIVCDRETRQSRGYGFVKFQSGSS-AQQAIA 102 (139)
T ss_dssp EEEEESCSTT---------CCHHHHHHHHHH--HSCEEEEEEEEETTTTEEEEEEEEEESSHHH-HHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEEcCCCCCcceEEEEEECCHHH-HHHHHH
Confidence 4667888764 356889999999 8774 566666543 358999999986433 344444
No 310
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=40.02 E-value=15 Score=25.52 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=20.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
..+.+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2el6_A 8 AGVNPYKCSQCEKS---FSGKLRLLVHQRM 34 (46)
T ss_dssp CCCCSEECSSSSCE---ESSHHHHHHHHGG
T ss_pred CCCCCeECCCCCcc---cCCHHHHHHHHHH
Confidence 46678999999744 6677888888544
No 311
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=39.81 E-value=71 Score=27.12 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=28.8
Q ss_pred HHHHHhchhHHhhhHHhHHHhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhh
Q 038527 397 IIELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEM 452 (630)
Q Consensus 397 il~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l 452 (630)
+++|..||+ .|.-||.+|+|.+++.-| .|..|.+...+-..+|
T Consensus 22 ~~~Lq~Ql~---~Lq~Ev~~LRGqiE~~~~----------~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 22 LTQLQQQLS---DNQSDIDSLRGQIQENQY----------QLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHhHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 455655555 688899999999998877 3444555444444444
No 312
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=39.75 E-value=22 Score=28.73 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=32.7
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCC-cccccccCCCCCceeEEEEeCCCh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNP-LKVHPLWSRRGHSGFAVVEFYKDW 182 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p-~kv~~l~g~~Gh~g~aVV~F~~dw 182 (630)
.+.|-|+|.. .+...|++.|+. |.+ +....+. +.|++.|.|.+.-
T Consensus 10 ~l~V~nLp~~---------~t~~~l~~~F~~--~G~vv~~~~~~----~~g~afV~f~~~~ 55 (93)
T 2cqh_A 10 KLYIGNLSPA---------VTADDLRQLFGD--RKLPLAGQVLL----KSGYAFVDYPDQN 55 (93)
T ss_dssp CEEEECCCTT---------CCHHHHHHHHHH--TTCCCSSCEEE----ETTEEEECCSCHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHH--cCCceEEEEEc----CCCEEEEEECCHH
Confidence 3667888764 367889999999 777 5544442 4689999998644
No 313
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.49 E-value=35 Score=27.56 Aligned_cols=55 Identities=9% Similarity=-0.019 Sum_probs=36.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccc--cccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVH--PLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~--~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
..+.|-|+|.. .+...|++.|+. |.++.-. ...+ ..+|.+.|.|.+.- .-..|+.
T Consensus 16 ~~l~V~nlp~~---------~t~~~l~~~F~~--~G~v~~~~~i~~~--~~~~~afV~f~~~~-~a~~Ai~ 72 (96)
T 2e44_A 16 RKLQIRNIPPH---------LQWEVLDSLLVQ--YGVVESCEQVNTD--SETAVVNVTYSSKD-QARQALD 72 (96)
T ss_dssp CCEEEEEECSS---------SCHHHHHHHHHH--HSCEEEEEEECCS--SSSEEEEEEESSHH-HHHHHHH
T ss_pred CEEEEEcCCCC---------CCHHHHHHHHHh--cCCeEEEEEeecC--CCCCEEEEEECCHH-HHHHHHH
Confidence 56778898865 367889999999 8875433 3333 33455999997543 3344443
No 314
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=39.46 E-value=14 Score=26.95 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=18.8
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHA 62 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA 62 (630)
...+|.||.|+.. |.....|..|-
T Consensus 27 ~~~~~~C~~C~~~---f~~~~~l~~H~ 50 (60)
T 2adr_A 27 NEKPYPCGLCNRA---FTRRDLLIRHA 50 (60)
T ss_dssp SSCSEECTTTCCE---ESSHHHHHHHH
T ss_pred CCCCccCCCCCCc---cCCHHHHHHHH
Confidence 4568999999754 67778888884
No 315
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=39.39 E-value=2e+02 Score=25.46 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=22.1
Q ss_pred HHHHHHHhchh----HHhhhHHhHHHhhhhhHHHhhc
Q 038527 395 RKIIELQKGLD----AKQALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 395 ~kil~LEkqLd----~kQ~LELEi~qlkg~L~vmKh~ 427 (630)
+.|.-|-|.+| .+-.||..|+-|+..|..+|.+
T Consensus 69 ~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 69 NTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555 3556777888888888888876
No 316
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.28 E-value=13 Score=25.72 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=19.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
..+.+|.|+.|+.. |.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2ytt_A 8 EGEKPYQCSECGKS---FSGSYRLTQHWI 33 (46)
T ss_dssp SCCCTTCCSSSCCC---CSSHHHHHHHHT
T ss_pred CCCCCeeCCCCCcc---cCCHHHHHHHHH
Confidence 45678999999754 667777888843
No 317
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.12 E-value=44 Score=26.90 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=30.9
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCC
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKD 181 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~d 181 (630)
-.+.|-|+|.. .+...|++.|+. |.++ .+... .+++.|.|.+-
T Consensus 11 ~~l~V~nLp~~---------~t~~~l~~~F~~--~G~v~~v~~~------~~~afV~f~~~ 54 (92)
T 2dgt_A 11 TKLHVGNISPT---------CTNQELRAKFEE--YGPVIECDIV------KDYAFVHMERA 54 (92)
T ss_dssp EEEEEESCCSS---------CCHHHHHHHHHT--TSCCCEEEEC------SSEEEEEESCH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCeEEEEEE------CCEEEEEECCH
Confidence 35668888764 367889999999 8775 44433 34999999863
No 318
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=38.86 E-value=35 Score=29.58 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=38.3
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC-C-CCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR-R-GHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~-~-Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
++.|-|+|.. .+...|.+.|+. |.+. .++...++ . .+.|++.|.|.+. ..-..|+.
T Consensus 4 ~l~v~nlp~~---------~~~~~l~~~f~~--~G~i~~v~~~~~~~~~~~~g~afV~f~~~-~~A~~a~~ 62 (167)
T 1fxl_A 4 NLIVNYLPQN---------MTQEEFRSLFGS--IGEIESCKLVRDKITGQSLGYGFVNYIDP-KDAEKAIN 62 (167)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHHT--TSCEEEEEEEECTTTCCEEEEEEEEESSH-HHHHHHHH
T ss_pred eEEEcCCCCC---------CCHHHHHHHHHh--cCCeEEEEEEeCCCCCcceeEEEEEECCH-HHHHHHHH
Confidence 4677888865 367889999999 8775 45555554 3 3569999999763 33344443
No 319
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.82 E-value=14 Score=25.51 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=21.0
Q ss_pred EecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 34 EVSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 34 k~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
-.+..+|.|+.|+.. |.....|..|-..
T Consensus 7 H~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ytr_A 7 GTGEKPYKCNECGKA---FSQTSKLARHQRI 34 (46)
T ss_dssp CSSCCTTCCTTTCCC---CSSHHHHHHHHTT
T ss_pred CCCCcCcCCCCCCCc---cCCHHHHHHHHHh
Confidence 346778999999754 7777888888543
No 320
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=38.76 E-value=15 Score=26.64 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=19.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.++.+|.|+.|+.. |..-..|..|-.
T Consensus 20 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 45 (54)
T 1yui_A 20 QSEQPATCPICYAV---IRQSRNLRRHLE 45 (54)
T ss_dssp TSSCCEECTTTCCE---ESSHHHHHHHHH
T ss_pred CCCCCccCCCCCcc---cCCHHHHHHHHH
Confidence 45678999999744 667777888854
No 321
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.42 E-value=49 Score=26.76 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=36.3
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.+.|-|+|.. .+...|++.|+. |.++.-.+.....|. ++.|.|.+ -..-..|+.
T Consensus 10 ~l~V~nl~~~---------~t~~~l~~~F~~--~G~v~~v~~~~~~g~--~afV~f~~-~~~a~~ai~ 63 (94)
T 2e5g_A 10 SVFVSGFPRG---------VDSAQLSEYFLA--FGPVASVVMDKDKGV--FAIVEMGD-VGAREAVLS 63 (94)
T ss_dssp EEEEECCCTT---------CCHHHHHHHGGG--TSCEEEEEECSSSCC--EEEEEESS-HHHHHHHHT
T ss_pred EEEEECCCCC---------CCHHHHHHHHHh--cCCeEEEEEcCCCCc--EEEEEECC-HHHHHHHHh
Confidence 3567788764 367889999999 887654333333444 99999976 445555555
No 322
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.39 E-value=15 Score=25.32 Aligned_cols=26 Identities=23% Similarity=0.407 Sum_probs=19.2
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.+..+|.|+.|+.. |.....|..|-.
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (46)
T 2emp_A 8 TGVKPYMCNECGKA---FSVYSSLTTHQV 33 (46)
T ss_dssp SCCCSEECSSSCCE---ESCHHHHHHHHH
T ss_pred CCCcCeECCCCCch---hCCHHHHHHHHH
Confidence 45678999999744 666777777743
No 323
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=38.38 E-value=28 Score=30.54 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=37.2
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccc---ccc-----CCCCCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVH---PLW-----SRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~---~l~-----g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
++.|-|++.. .+...|.+.|+. |.++... +.+ ....+.|++.|.|.+.-. -..|+.
T Consensus 47 ~l~V~nLp~~---------~te~~L~~~F~~--~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~-A~~Ai~ 110 (143)
T 3egn_A 47 RIYVKNLAKH---------VQEKDLKYIFGR--YVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKA-AAKALK 110 (143)
T ss_dssp EEEEEEECTT---------CCHHHHHHHHGG--GCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHH-HHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHH--hCCcccccccceeeEEeccCCCcccEEEEEeCCHHH-HHHHHH
Confidence 5778898764 367889999999 8765431 111 234568999999975443 344554
No 324
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=38.33 E-value=31 Score=31.05 Aligned_cols=57 Identities=14% Similarity=0.250 Sum_probs=40.1
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC-C-CceeEEEEeCCChhhhHHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR-G-HSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~-G-h~g~aVV~F~~dw~Gf~nA~~l 191 (630)
.+.|-|+|.. .+...|.+.|+. |.++ .++...++. | +.|++.|.|.+ -..-..|+..
T Consensus 15 ~l~V~nLp~~---------~te~~l~~~F~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~-~~~A~~A~~~ 74 (196)
T 1l3k_A 15 KLFIGGLSFE---------TTDESLRSHFEQ--WGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAMNA 74 (196)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESS-HHHHHHHHHT
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--CCCEEEEEEEEcCCCCCccceEEEEeCC-HHHHHHHHhc
Confidence 5778899875 367889999999 8775 566665543 3 68999999975 3344445443
No 325
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=37.90 E-value=17 Score=25.16 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=20.1
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ema_A 8 TGEKRYKCNECGKV---FSRNSQLSQHQKI 34 (46)
T ss_dssp TTSCCEECSSSCCE---ESSHHHHHHHHTG
T ss_pred CCCcCcCCCCCcch---hCCHHHHHHHHHh
Confidence 45678999999744 6777888888543
No 326
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.82 E-value=31 Score=30.09 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=33.7
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCC
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKD 181 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~d 181 (630)
..+-|-|+|.. .+..+|++.|+. |.++ .|+.+.+ .|++.|+|...
T Consensus 17 ~~LfV~nLp~~---------vte~dL~~lF~~--fG~V~~v~i~~~----kGfaFVeF~~~ 62 (105)
T 1sjq_A 17 RVIHIRKLPID---------VTEGEVISLGLP--FGKVTNLLMLKG----KNQAFIEMNTE 62 (105)
T ss_dssp CEEEECSCCTT---------SCHHHHHHHHHH--HCCEEEEEEETT----TTEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEEcC----CCEEEEEECCH
Confidence 45677888764 367889999999 8875 5555543 68999999864
No 327
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.74 E-value=14 Score=25.49 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=20.6
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ytg_A 8 TGEKPFKCGECGKS---YNQRVHLTQHQRV 34 (46)
T ss_dssp SSCCSEECTTTCCE---ESSSHHHHTTGGG
T ss_pred CCCCCeECCCCCcc---cCCHHHHHHHHHH
Confidence 46778999999744 6777888888543
No 328
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=37.71 E-value=11 Score=31.07 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=40.1
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCC--CCCceeEEEEeCCChhhhHHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIMF 191 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~l 191 (630)
+-.+.|-|++.. .+...|++.|+. |.++....+... .-+.|++.|.|.+ -..-..|+.|
T Consensus 17 ~~~l~V~nLp~~---------~t~~~l~~~F~~--~G~v~~~~~~~~~~g~~~g~afV~f~~-~~~a~~A~~l 77 (101)
T 1fj7_A 17 PFNLFIGNLNPN---------KSVAELKVAISE--LFAKNDLAVVDVRTGTNRKFGYVDFES-AEDLEKALEL 77 (101)
T ss_dssp SEEEEEECCCTT---------SCHHHHHHHHHH--HHHHHTCCCCEEEEETTTTEEEEEESS-HHHHHHHHHG
T ss_pred CCEEEEeCCCCC---------CCHHHHHHHHHH--hCCcceEEEecCCCCCcCcEEEEEECC-HHHHHHHHhc
Confidence 346778898865 367889999999 876554334332 2367899999975 4445556653
No 329
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=37.64 E-value=16 Score=27.97 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=19.6
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
....+|.||.|+.. |.....|..|-.
T Consensus 38 ~~~~~~~C~~C~~~---f~~~~~L~~H~~ 63 (72)
T 1x6e_A 38 TGEKPYKCLECGKA---FSQNSGLINHQR 63 (72)
T ss_dssp GCSCCEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 35678999999744 677788888854
No 330
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.54 E-value=14 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=20.6
Q ss_pred EecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 34 EVSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 34 k~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
-..+.+|.|+.|+.. |..-..|..|-..
T Consensus 7 H~~~~~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2en6_A 7 GSGEKPYGCNECGKT---FSQKSILSAHQRT 34 (46)
T ss_dssp CCSSCCEEETTTTEE---ESSHHHHHHHHHH
T ss_pred cCCCcCeECCCCCcc---cCchHHHHHHHHH
Confidence 346788999999744 6677788888543
No 331
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=37.42 E-value=36 Score=31.05 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=38.9
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCC---CcccccccCC--CCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFN---PLKVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~---p~kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
-.+.|-|++.. .+...|++.|+. |. ...|+...++ .-..||+.|.|.+. ..-..|+.
T Consensus 56 ~~lfVgnLp~~---------~te~~L~~~F~~--~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~-~~A~~Ai~ 117 (156)
T 3n9u_C 56 AAVYVGSFSWW---------TTDQQLIQVIRS--IGVYDVVELKFAENRANGQSKGYAEVVVASE-NSVHKLLE 117 (156)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHHH--TTCCCEEEEEEEECTTTCCEEEEEEEEESCH-HHHHHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHH--HCCccEEEEEEEecCCCCccceEEEEEECCH-HHHHHHHH
Confidence 46778888764 367889999999 76 3466666553 23579999999754 33344444
No 332
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=37.40 E-value=68 Score=26.82 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=17.9
Q ss_pred HHHHHhchhHHhhhHHhHHHhhhhhHH
Q 038527 397 IIELQKGLDAKQALELEIEQKRGTIQV 423 (630)
Q Consensus 397 il~LEkqLd~kQ~LELEi~qlkg~L~v 423 (630)
|-.||++|++| +-+|++|+..|.-
T Consensus 42 I~eLEk~L~ek---d~eI~~LqseLDK 65 (72)
T 3nmd_A 42 IDELELELDQK---DELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 77888888765 6778888887753
No 333
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=37.03 E-value=40 Score=30.85 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=40.1
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCCChhhhHHHHH
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
...+.|-|+|.. .+...|.+.|+. |.++ .++.+..+ .-+.|++.|.|.+. ..-..|+.
T Consensus 28 ~~~l~V~nLp~~---------~t~~~l~~~f~~--~G~i~~v~i~~~~~~g~~~g~afV~f~~~-~~A~~A~~ 88 (216)
T 2qfj_A 28 MSRVYVGSIYYE---------LGEDTIRQAFAP--FGPIKSIDMSWDSVTMKHKGFAFVEYEVP-EAAQLALE 88 (216)
T ss_dssp HTEEEEECCCTT---------CCHHHHHHHHGG--GSCEEEEEECCC-CC-CCCSEEEEEESSH-HHHHHHHH
T ss_pred CCEEEEECCCCC---------CCHHHHHHHHHh--CCCEEEEEEeecCCCCccCceEEEEeCCH-HHHHHHHH
Confidence 346889999875 367889999999 8774 56665554 23789999999754 33444444
No 334
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.77 E-value=13 Score=25.61 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=20.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |.....|..|-..
T Consensus 8 ~~~~~~~C~~C~k~---F~~~~~L~~H~~~ 34 (46)
T 2eoe_A 8 TGEKPYKCNECGKV---FTQNSHLANHQRI 34 (46)
T ss_dssp CCCCSSEETTTTEE---CSSHHHHHHHHGG
T ss_pred CCCCCeECCCcChh---hCCHHHHHHHHHH
Confidence 46778999999744 7777888888543
No 335
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=36.68 E-value=49 Score=28.21 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=52.4
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCC---CCceeEEEEeCCChhhhHHHHHHHhhhhhc
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRR---GHSGFAVVEFYKDWAGFKNAIMFEKSFEVD 198 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~---Gh~g~aVV~F~~dw~Gf~nA~~lek~Fe~~ 198 (630)
+++|.|+.+. . .+.-.....|++.|+. |.++ .|.+...+. ...|++.|.|.+.-..-.-...|+..+
T Consensus 10 ~l~l~Nm~~~-~---~l~dd~~~dl~~~f~~--~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~--- 80 (105)
T 2pe8_A 10 VVLLRNMVGA-G---EVDEDLEVETKEECEK--YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY--- 80 (105)
T ss_dssp EEEEESSSCS-C---CC---CHHHHHHHGGG--GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE---
T ss_pred EEEEEcCCCh-H---HhhHHHHHHHHHHHHh--cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE---
Confidence 6888898753 1 1222356889999999 8875 666555432 347999999987654433222333221
Q ss_pred CCChhhhhhhcCCCccceeeeeecCCCCC
Q 038527 199 HHGKKDFYAVKNLGDKLYGWIARDDDYNS 227 (630)
Q Consensus 199 ~~GKkdW~~~~~~~~~LYGWvAradDy~s 227 (630)
-+++.|+--.|..++|..
T Consensus 81 -----------~~Gr~i~v~~a~~~~f~~ 98 (105)
T 2pe8_A 81 -----------FGGRVVKACFYNLDKFRV 98 (105)
T ss_dssp -----------ETTEECEEEECCHHHHHT
T ss_pred -----------ECCcEEEEEEcCHHHhhh
Confidence 135678887787777653
No 336
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=36.50 E-value=17 Score=27.64 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=11.7
Q ss_pred CCeeeccCCCCCCccccchHHHHhh
Q 038527 37 ETAYRCPFCRGKKETDYLYKELLQH 61 (630)
Q Consensus 37 ~~~~~CP~C~~kkK~~y~~~~LLqH 61 (630)
..+|.|+.|+.. |.....|..|
T Consensus 47 ~~~~~C~~C~~~---f~~~~~l~~H 68 (73)
T 1f2i_G 47 QKPFQCRICMRN---FSRSDHLTTH 68 (73)
T ss_dssp CCCEECTTTCCE---ESCHHHHHHH
T ss_pred CCCeECCCCCch---hCCHHHHHHH
Confidence 345666666532 4445555555
No 337
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.44 E-value=18 Score=24.97 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=19.7
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+..+|.|+.|+.. |..-..|..|...
T Consensus 8 ~~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2ytd_A 8 SGEKPYKCSECGKA---FHRHTHLNEHRRI 34 (46)
T ss_dssp CCCCSEECSSSCCE---ESSHHHHHHHHHH
T ss_pred CCCcCeECCCCCCe---eCChHHHHHHHHH
Confidence 45678999999744 6667777778543
No 338
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=36.33 E-value=1.7e+02 Score=25.52 Aligned_cols=45 Identities=9% Similarity=0.242 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhcccccH
Q 038527 388 EEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMREENV 432 (630)
Q Consensus 388 rEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~ 432 (630)
+.+..+..||.+|++++...+.=---+..|.+-..-=-+|||..+
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s 59 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPAS 59 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHH
Confidence 456778899999998887665544444444444443344554433
No 339
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=35.94 E-value=42 Score=30.68 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=35.6
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC--CCCceeEEEEeCC
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR--RGHSGFAVVEFYK 180 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~--~Gh~g~aVV~F~~ 180 (630)
-++.|-|++.. .+..+|++.|+. |.++ .++.+.++ .-+.|++.|.|.+
T Consensus 126 ~~l~v~nlp~~---------~t~~~l~~~f~~--~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 126 NRIYVASVHQD---------LSDDDIKSVFEA--FGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp CEEEEECCCTT---------CCHHHHHHHHTT--SSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred cEEEEeCCCCc---------CCHHHHHHHHhc--cCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 46778898864 367889999999 8765 56666553 2358999999976
No 340
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=35.65 E-value=43 Score=28.52 Aligned_cols=53 Identities=19% Similarity=0.141 Sum_probs=36.1
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcc-cccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLK-VHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~k-v~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.++.|-|+|.. .+..+|++.|+. |..+. |..+. ..|+|.|+|.. ...-..|+.
T Consensus 16 ~~l~V~nLp~~---------~te~~L~~~F~~--fG~V~~v~i~~----~kg~aFVef~~-~~~A~~Ai~ 69 (104)
T 1wex_A 16 PVVHVRGLCES---------VVEADLVEALEK--FGTICYVMMMP----FKRQALVEFEN-IDSAKECVT 69 (104)
T ss_dssp SEEEEESCCSS---------CCHHHHHHHHTT--TSCEEEEEEET----TTTEEEEEESS-HHHHHHHHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--CCCEEEEEEEC----CCCEEEEEECC-HHHHHHHHH
Confidence 46778898764 367889999999 88754 33332 26899999976 333344443
No 341
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=35.19 E-value=2.4e+02 Score=25.60 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhchhHHhhhHHhHH-----------HhhhhhHHHhhc-ccccHHHHHHHHHHHHHHHHHHhhhHHH
Q 038527 388 EEKEKLRRKIIELQKGLDAKQALELEIE-----------QKRGTIQVMKHM-REENVEVQEKMDAIIKEIKEKEGEMDVV 455 (630)
Q Consensus 388 rEKe~~~~kil~LEkqLd~kQ~LELEi~-----------qlkg~L~vmKh~-~~~d~~~~~k~~~l~~~l~ek~~~l~~~ 455 (630)
|--++..+.-.-|+.||-..|.-=++-+ -|+..|...|.= -..-.++...|..|+.+|++...+++.+
T Consensus 18 rAq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erl 97 (121)
T 3mq7_A 18 RAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 97 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHHHHHH
Q 038527 456 EALNQSLIVR 465 (630)
Q Consensus 456 e~~nq~L~~k 465 (630)
-.-|+.|-++
T Consensus 98 r~~~~~~~~r 107 (121)
T 3mq7_A 98 RRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HhhchhhhhH
No 342
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.01 E-value=16 Score=25.30 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=20.5
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.++.+|.|+.|+.. |..-..|..|-..
T Consensus 8 ~~~~~~~C~~C~k~---f~~~~~L~~H~~~ 34 (46)
T 2en1_A 8 SGEKPFKCEECGKR---FTQNSQLHSHQRV 34 (46)
T ss_dssp CCCCSEEETTTTEE---ESSHHHHHHHGGG
T ss_pred CCCCCeeCCCCCcc---cCCHHHHHHHHHH
Confidence 46778999999744 6777888888644
No 343
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=34.94 E-value=41 Score=31.90 Aligned_cols=49 Identities=16% Similarity=0.015 Sum_probs=34.2
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCCh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDW 182 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw 182 (630)
.++.|-|++.. .+...|++.|+.-||....++.+.. ..|++.|+|.+.-
T Consensus 152 ~~l~V~nlp~~---------~t~~~l~~~f~~~G~~i~~v~i~~~---~~g~afV~f~~~~ 200 (229)
T 2adc_A 152 ATLHLSNIPPS---------VSEEDLKVLFSSNGGVVKGFKFFQK---DRKMALIQMGSVE 200 (229)
T ss_dssp SEEEEECCCTT---------CCHHHHHHHHHTTSCCEEEEEECSS---STTCEEEEESSHH
T ss_pred CEEEEeCCCcc---------CCHHHHHHHHHHcCCCeeEEEEEEC---CCcEEEEEECCHH
Confidence 67788898764 2568899999994444445555432 3689999997743
No 344
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=34.49 E-value=37 Score=29.71 Aligned_cols=88 Identities=11% Similarity=0.025 Sum_probs=52.3
Q ss_pred eEEEeccccccC-CCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHHHHHhhhhhcCCC
Q 038527 123 VGIVANIKTQRG-EDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKSFEVDHHG 201 (630)
Q Consensus 123 mgII~Ni~~e~~-~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~lek~Fe~~~~G 201 (630)
+++|.|+.+... .|..+...=-..|++.|+. |..+.-..+. .....|++.|+|...-..-.-...|+ |
T Consensus 9 vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~k--fG~V~~v~i~-~~~~~G~~fV~f~~~e~A~~Ai~~ln--------G 77 (114)
T 3s6e_A 9 CFQLSNMFNPQTEEEVGWDTEIKDDVIEECNK--HGGVIHIYVD-KNSAQGNVYVKCPSIAAAIAAVNALH--------G 77 (114)
T ss_dssp EEEEESSCCTTTCCSTTHHHHHHHHHHHHHTT--TTCCSEEEEC-TTCTTCCEEEECSSHHHHHHHHHHHT--------T
T ss_pred EEEEECCCChHHccChhHHHHHHHHHHHHHhc--cCCEEEEEEe-cCCCcEEEEEEECCHHHHHHHHHHhC--------C
Confidence 688999988522 2444444445678888988 8875332232 22348999999987543322111222 1
Q ss_pred hhhhhhhcCCCccceeeeeecCCCCC
Q 038527 202 KKDFYAVKNLGDKLYGWIARDDDYNS 227 (630)
Q Consensus 202 KkdW~~~~~~~~~LYGWvAradDy~s 227 (630)
+ .-+|+.|+--.+..++|.+
T Consensus 78 ~------~f~GR~i~v~~~~~~~y~~ 97 (114)
T 3s6e_A 78 R------WFAGKMITAAYVPLPTYHN 97 (114)
T ss_dssp C------EETTEECEEEEECHHHHHH
T ss_pred C------EECCEEEEEEEEcHHHHHH
Confidence 1 1236778887777777753
No 345
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=34.24 E-value=1.8e+02 Score=26.74 Aligned_cols=11 Identities=9% Similarity=0.223 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 038527 328 SQLEAQKMQLE 338 (630)
Q Consensus 328 ~eLe~k~~eL~ 338 (630)
..++.+|+++.
T Consensus 35 ~~vd~km~ei~ 45 (138)
T 3hnw_A 35 SYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 34444555444
No 346
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.23 E-value=37 Score=27.25 Aligned_cols=50 Identities=22% Similarity=0.261 Sum_probs=33.3
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.+.|-|+|.. .+...|++.|+. |.++ .+... .|++.|.|.+.- .-..|+.
T Consensus 11 ~l~V~nlp~~---------~t~~~l~~~F~~--~G~v~~~~~~------~~~afV~f~~~~-~a~~A~~ 61 (90)
T 2dnp_A 11 KIFVGNVSAA---------CTSQELRSLFER--RGRVIECDVV------KDYAFVHMEKEA-DAKAAIA 61 (90)
T ss_dssp CEEEESCCTT---------CCHHHHHHHHHH--HSCEEEEEEC------SSCEEEEESCHH-HHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHc--CCCEEEEEEE------CCEEEEEECCHH-HHHHHHH
Confidence 4668888764 367889999999 8774 33333 349999998543 3344443
No 347
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=33.70 E-value=35 Score=28.21 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=34.0
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.+.|-|+|.. .+...|.+.|+. |.++....+. .|++.|.|.+.-. -..|+.
T Consensus 13 ~l~V~nl~~~---------~t~~~l~~~F~~--~G~i~~v~~~-----~~~afV~f~~~~~-a~~A~~ 63 (103)
T 2dgu_A 13 VLFVRNLANT---------VTEEILEKAFSQ--FGKLERVKKL-----KDYAFIHFDERDG-AVKAME 63 (103)
T ss_dssp CEEEECCCTT---------CCHHHHHHHHHH--HSCEEEEEEC-----SSCEEEEESSHHH-HHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEE-----CCEEEEEeCCHHH-HHHHHH
Confidence 4668888764 367889999999 8775333332 4599999986433 344443
No 348
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=33.38 E-value=17 Score=25.71 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=19.2
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHA 62 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA 62 (630)
.+.+|.|+.|+.. |.....|..|-
T Consensus 5 gekp~~C~~CgK~---F~~~s~L~~H~ 28 (36)
T 1fv5_A 5 KPARFMCLPCGIA---FSSPSTLEAHQ 28 (36)
T ss_dssp SCCCCEETTTTEE---CSCHHHHHHHH
T ss_pred CccCeECCCCCCc---cCCHhHccCcC
Confidence 5678999999744 77788888885
No 349
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=32.99 E-value=38 Score=28.30 Aligned_cols=52 Identities=17% Similarity=0.317 Sum_probs=36.0
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
-.+.|-|++.. ..+...|++.|+. |.++.-..+ +.|++.|.|...-.. ..|+
T Consensus 28 ~~l~V~nl~~~--------~~t~~~l~~~F~~--~G~v~~v~i-----~~g~afV~f~~~~~A-~~A~ 79 (110)
T 1wf1_A 28 SRVFIGNLNTA--------LVKKSDVETIFSK--YGRVAGCSV-----HKGYAFVQYSNERHA-RAAV 79 (110)
T ss_dssp SEEEECSCCCS--------SCCHHHHHHHHGG--GSCCSEEEE-----ETTEEEEECSSSHHH-HHHH
T ss_pred cEEEEeCCCcc--------cCCHHHHHHHHHh--CCCeEEEEE-----eCCEEEEEECCHHHH-HHHH
Confidence 36778888753 0357889999999 877544333 679999999775543 4444
No 350
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=32.92 E-value=54 Score=28.34 Aligned_cols=50 Identities=16% Similarity=0.239 Sum_probs=36.4
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCC-CC-CceeEEEEeCCCh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSR-RG-HSGFAVVEFYKDW 182 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~-~G-h~g~aVV~F~~dw 182 (630)
..+.|-|+|.. .+...|.+.|+. |.+. .++...++ .| +.|++.|.|.+.-
T Consensus 89 ~~l~v~nl~~~---------~t~~~l~~~f~~--~G~i~~~~i~~~~~~g~~~g~afV~f~~~~ 141 (167)
T 1fxl_A 89 ANLYVSGLPKT---------MTQKELEQLFSQ--YGRIITSRILVDQVTGVSRGVGFIRFDKRI 141 (167)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHGG--GSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CcEEECCCCCc---------CCHHHHHHHHHh--cCCEeEEEEEecCCCCCccceEEEEeCCHH
Confidence 45778898864 367889999999 8775 55555554 33 5799999998743
No 351
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=32.90 E-value=45 Score=32.24 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=34.7
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAG 184 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~G 184 (630)
.++.|-|++.. .+...|++.|+. |.++.-..+. .+..|++.|+|.+.-..
T Consensus 208 ~~l~v~nl~~~---------~~~~~l~~~F~~--~G~i~~v~~~--~~~~g~afV~f~~~~~A 257 (282)
T 3pgw_A 208 HILFLTNLPEE---------TNELMLSMLFNQ--FPGFKEVRLV--PGRHDIAFVEFDNEVQA 257 (282)
T ss_pred CEEEEeCCCCc---------CCHHHHHHHHHh--cCCeEEEEEe--cCCCcEEEEEeCCHHHH
Confidence 45778888754 366889999999 8775433333 34468999999875443
No 352
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.84 E-value=23 Score=27.09 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=19.0
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.+..+|.|+.|+.. |.....|..|-.
T Consensus 13 ~~~~~~~C~~C~k~---f~~~~~l~~H~~ 38 (74)
T 2lce_A 13 HSDKPYKCDRCQAS---FRYKGNLASHKT 38 (74)
T ss_dssp CCCCSBCCTTSSCC---BSCHHHHHHHHH
T ss_pred CCCCCeECCCCCce---eCCHHHHHHHHH
Confidence 35678999999855 666677777754
No 353
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.59 E-value=23 Score=25.04 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=18.8
Q ss_pred cCCeeeccC--CCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPF--CRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~--C~~kkK~~y~~~~LLqHA~ 63 (630)
.+.+|.|++ |+.. |..-..|..|-.
T Consensus 6 gekp~~C~~~~C~k~---F~~~~~L~~H~r 32 (38)
T 2eln_A 6 SGILLKCPTDGCDYS---TPDKYKLQAHLK 32 (38)
T ss_dssp CCCCEECSSSSCCCE---ESCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCc---cCCHHHHHHHHH
Confidence 567899987 9743 777788888854
No 354
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=32.56 E-value=1.1e+02 Score=25.76 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHh
Q 038527 434 VQEKMDAIIKEIKEKEGEMDVVEAL 458 (630)
Q Consensus 434 ~~~k~~~l~~~l~ek~~~l~~~e~~ 458 (630)
+...++++..+|.+..+....|+++
T Consensus 61 l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 61 VLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777777766655544
No 355
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.52 E-value=2.1e+02 Score=26.45 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc
Q 038527 381 RLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 381 kL~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~ 427 (630)
+.|-.-.++...+..+.-+|+.||..+..| |.-|..+|.-+|++
T Consensus 89 ~MVa~ar~~~~~~e~r~~~L~~ql~e~e~l---l~~lq~QL~~LK~v 132 (135)
T 2e7s_A 89 NLVADARMEKYAIEILNKRLTEQLREKDML---LDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHTTTHHHHC---C-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 344555788888999999999999998654 55567777777664
No 356
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=32.49 E-value=43 Score=32.43 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=40.7
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCC---CcccccccCC-CC-CceeEEEEeCCChhhhHHHHH
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFN---PLKVHPLWSR-RG-HSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~---p~kv~~l~g~-~G-h~g~aVV~F~~dw~Gf~nA~~ 190 (630)
..+.|-|++.. .+...|++.|+. |. ...|+++.++ .| ..||+.|.|.+.-. -..|+.
T Consensus 69 ~~lfVgnL~~~---------~te~~L~~~F~~--~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~-a~~Ai~ 130 (229)
T 3q2s_C 69 IALYIGNLTWW---------TTDEDLTEAVHS--LGVNDILEIKFFENRANGQSKGFALVGVGSEAS-SKKLMD 130 (229)
T ss_dssp CEEEEESCCTT---------CCHHHHHHHHHT--TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTH-HHHHHT
T ss_pred cEEEEeCCCCC---------CCHHHHHHHHHH--HCCcceEEEEEEecCCCCccceEEEEEECCHHH-HHHHHH
Confidence 35778888764 357889999999 76 5677777764 33 67999999987644 355554
No 357
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.44 E-value=4.7e+02 Score=27.54 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038527 299 KSRNEEIRKMQQSAHDHFQKIY 320 (630)
Q Consensus 299 ~~yneE~~kmQ~~a~~~~~~i~ 320 (630)
..|..|+.-+-+.-|+++-++.
T Consensus 324 ~eF~~Eve~L~~i~HrNLV~L~ 345 (487)
T 3oja_A 324 ETERLECERENQARQREIDALK 345 (487)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhHH
Confidence 4566666666666566554443
No 358
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.35 E-value=22 Score=25.77 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=19.3
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
...+|.|+.|+.. |.....|..|-.
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~~ 33 (54)
T 2eps_A 9 VGKPYICQSCGKG---FSRPDHLNGHIK 33 (54)
T ss_dssp SSCCEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCeECCCCCcc---cCCHHHHHHHHH
Confidence 4578999999754 677788888853
No 359
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=32.05 E-value=1.7e+02 Score=25.37 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=34.5
Q ss_pred HhhhhhHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHH
Q 038527 416 QKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELIN 482 (630)
Q Consensus 416 qlkg~L~vmKh~~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~ 482 (630)
.+|.++++||.- -.....+.+.+..++.+.+......+.-..+|-.|-+..-++|..+...|-.
T Consensus 6 aIKkKm~~lk~e---~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~e 69 (101)
T 3u1c_A 6 AIKKKMQMLKLD---KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHK 69 (101)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666651 1224455556666666655555555555555555555555555555544433
No 360
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=31.88 E-value=1e+02 Score=33.03 Aligned_cols=53 Identities=25% Similarity=0.408 Sum_probs=35.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhcc-CCccccc--------eeecCCC
Q 038527 431 NVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEG-RTRATIG--------VKRMGEI 501 (630)
Q Consensus 431 d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~~l~~~-~~~~~Ig--------iKrmGel 501 (630)
-.+++..+.+|.+++.+.+.++. ++++....++-.+..+ ....++| |++-|+-
T Consensus 70 ~~~l~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~ipN~~~~~vp~g~~e~~n~~~~~~g~~ 131 (425)
T 2dq3_A 70 TTEIQNRVKELKEEIDRLEEELR------------------KVEEELKNTLLWIPNLPHPSVPVGEDEKDNVEVRRWGEP 131 (425)
T ss_dssp TTTSTTHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHTSCCCCCTTSCCCSSGGGCEEEEEESCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHhCCCCCCCCCCCCCCccCcEEEEEeCCC
Confidence 34566777777777776666663 5555566666677777 4555665 8999973
No 361
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=31.81 E-value=22 Score=28.21 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=20.1
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
++++|.|+.|+.. |.....|..|-..
T Consensus 5 ~~~~~~C~~C~~~---f~~~~~l~~H~~~ 30 (96)
T 2dmd_A 5 SSGPHKCEVCGKC---FSRKDKLKTHMRC 30 (96)
T ss_dssp CCCCCCBTTTTBC---CCCHHHHHHHGGG
T ss_pred CCcCeECCCCCCc---cCCHHHHHHHHHh
Confidence 5678999999754 6778888888654
No 362
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.71 E-value=21 Score=27.56 Aligned_cols=29 Identities=17% Similarity=0.359 Sum_probs=21.0
Q ss_pred eEEecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 32 KVEVSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 32 kVk~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.+-..+.+|.|+.|+.. |.....|..|-.
T Consensus 8 ~~H~~~k~~~C~~C~k~---f~~~~~L~~H~~ 36 (77)
T 2ct1_A 8 RTHSGEKPYECYICHAR---FTQSGTMKMHIL 36 (77)
T ss_dssp CCCSCCCSEECTTTCCE---ESCHHHHHHHHH
T ss_pred cccCCCCCeECCCcCch---hCCHHHHHHHHH
Confidence 34456788999999754 667778888853
No 363
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.58 E-value=23 Score=26.80 Aligned_cols=26 Identities=19% Similarity=0.117 Sum_probs=19.2
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
++.+|.|+.|+.. |.....|..|-..
T Consensus 6 ~~~~~~C~~C~k~---f~~~~~L~~H~~~ 31 (70)
T 1x5w_A 6 SGHPEKCSECSYS---CSSKAALRIHERI 31 (70)
T ss_dssp CCCSEECSSSSCE---ESSHHHHHHHHGG
T ss_pred CCCCeECCCCCcc---cCCHHHHHHHHHH
Confidence 4678999999744 6667778888554
No 364
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=31.55 E-value=19 Score=25.28 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=20.0
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
...+|.|+.|+.. |.....|..|-..
T Consensus 9 ~~k~~~C~~C~k~---f~~~~~L~~H~~~ 34 (48)
T 2epr_A 9 TRKQVACEICGKI---FRDVYHLNRHKLS 34 (48)
T ss_dssp CCCSEEETTTTEE---ESSHHHHHHHGGG
T ss_pred CCcCeeCCCCCcc---cCCHHHHHHHHHh
Confidence 5678999999744 7778888888554
No 365
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=31.55 E-value=43 Score=32.37 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=38.6
Q ss_pred cceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCC-ceeEEEEeCCChh
Q 038527 121 PWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGH-SGFAVVEFYKDWA 183 (630)
Q Consensus 121 PwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh-~g~aVV~F~~dw~ 183 (630)
+..+.|-|+|.. . .+...|.+.|+. |.++ .++...++.|. +|++.|.|.+.-.
T Consensus 184 ~~~l~v~nlp~~-~-------~~~~~l~~~f~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~ 238 (284)
T 3smz_A 184 SRCLCVDRLPPG-F-------NDVDALCRALSA--VHSPTFCQLACGQDGQLKGFAVLEYETAEM 238 (284)
T ss_dssp CSEEEEECCCTT-C-------CCHHHHHHHTCS--SSCCSEEEEEECSSCCEEEEEEEECSSHHH
T ss_pred ccEEEEecCCcc-c-------CCHHHHHHHhhC--CCCeEEEEEEECCCCCcccEEEEEeCCHHH
Confidence 456778898764 1 145789999998 8764 67767666664 8999999986543
No 366
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.53 E-value=25 Score=27.38 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=18.5
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
..++|.||-|... |-.+.+|-.|-.
T Consensus 9 ~~~~~~CPrCn~~---f~~~~sLr~Hmk 33 (49)
T 2e72_A 9 DGGRKICPRCNAQ---FRVTEALRGHMC 33 (49)
T ss_dssp CSSCCCCTTTCCC---CSSHHHHHHHHH
T ss_pred cCCceeCCccccc---ccchHHHHhhhh
Confidence 3479999999865 555778887743
No 367
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=31.37 E-value=18 Score=24.96 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=19.8
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
..+.+|.|+.|+.. |..-..|..|-..
T Consensus 6 ~~~k~~~C~~C~k~---f~~~~~l~~H~~~ 32 (45)
T 2epq_A 6 SGEKPYSCPVCGLR---FKRKDRMSYHVRS 32 (45)
T ss_dssp SSCCSSEETTTTEE---CSCHHHHHHHHHH
T ss_pred CCCCCCcCCCCCcc---cCCHHHHHHHHHH
Confidence 46678999999744 6667777777543
No 368
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.35 E-value=49 Score=29.33 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=34.7
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCCh
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDW 182 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw 182 (630)
.++.|-|+|.. .+..+|++.|+. |..+ .|+.+.+ .|+|.|+|...-
T Consensus 32 ~~LfVgNLp~~---------vte~dL~~lF~~--fG~V~~v~i~~~----kG~AFVeF~~~e 78 (119)
T 2ad9_A 32 RVIHIRKLPID---------VTEGEVISLGLP--FGKVTNLLMLKG----KNQAFIEMNTEE 78 (119)
T ss_dssp SEEEEESCCTT---------CCHHHHHHHHTT--TSCCCEEEEEGG----GTEEEEECSCHH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEeCC----CCEEEEEECCHH
Confidence 46778898864 367889999999 8875 4665543 689999998744
No 369
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=31.35 E-value=27 Score=21.83 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=17.9
Q ss_pred Ceeecc--CCCCCCccccchHHHHhhhhc
Q 038527 38 TAYRCP--FCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 38 ~~~~CP--~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+|.|+ .|+.. |.....|..|-..
T Consensus 2 k~~~C~~~~C~k~---f~~~~~L~~H~~~ 27 (32)
T 1zfd_A 2 RPYSCDHPGCDKA---FVRNHDLIRHKKS 27 (32)
T ss_dssp CSBCCCCTTCCCC---BSSSHHHHHHHGG
T ss_pred CCCcCcCCCCCCc---cCCHHHHHHHHHH
Confidence 579999 89744 7777888888543
No 370
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=31.32 E-value=1.8e+02 Score=26.48 Aligned_cols=73 Identities=19% Similarity=0.346 Sum_probs=39.5
Q ss_pred hhHHhHHHhhhhhHHHhhc-cccc----HHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhc------cHHHHHHH
Q 038527 409 ALELEIEQKRGTIQVMKHM-REEN----VEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKS------NDELQEAR 477 (630)
Q Consensus 409 ~LELEi~qlkg~L~vmKh~-~~~d----~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~s------ndElq~ar 477 (630)
...--|..+++.+.--.++ .... .++..--.+|...|..-+.+| ++|..+..|-|+.. .+||+. |
T Consensus 35 EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dL---eDLe~sI~ivE~np~kF~l~~~Ei~~-R 110 (130)
T 4dnd_A 35 EVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDL---EDLEETIGIVEANPGKFKLPAGDLQE-R 110 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCHHHHCCCHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCHHhcCCCHHHHHH-H
Confidence 3334444555555555554 2221 244444555555555555555 56667777767554 677766 6
Q ss_pred HHHHHhhh
Q 038527 478 KELINSLK 485 (630)
Q Consensus 478 k~li~~l~ 485 (630)
+..|..++
T Consensus 111 r~fV~~~r 118 (130)
T 4dnd_A 111 KVFVERMR 118 (130)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
No 371
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=30.83 E-value=14 Score=31.77 Aligned_cols=14 Identities=43% Similarity=1.103 Sum_probs=11.3
Q ss_pred ecCCeeeccCCCCC
Q 038527 35 VSETAYRCPFCRGK 48 (630)
Q Consensus 35 ~~~~~~~CP~C~~k 48 (630)
.-+..|.||||...
T Consensus 19 ~L~t~F~CPfCnh~ 32 (85)
T 1wii_A 19 TLETQFTCPFCNHE 32 (85)
T ss_dssp CCSSCCCCTTTCCS
T ss_pred CCCCeEcCCCCCCC
Confidence 35689999999755
No 372
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.41 E-value=23 Score=27.03 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=19.9
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
....+|.|+.|+.. |.....|..|-.
T Consensus 41 ~~~~~~~C~~C~k~---f~~~~~L~~H~~ 66 (74)
T 2lce_A 41 TGEKPYRCNICGAQ---FNRPANLKTHTR 66 (74)
T ss_dssp CCCCSEECTTTCCE---ESCHHHHHHHHH
T ss_pred CCCCCEECCCCCch---hCCHHHHHHHHH
Confidence 45678999999854 667788888854
No 373
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=30.41 E-value=14 Score=28.18 Aligned_cols=14 Identities=29% Similarity=0.702 Sum_probs=10.2
Q ss_pred eeeccCCCCCCccc
Q 038527 39 AYRCPFCRGKKETD 52 (630)
Q Consensus 39 ~~~CP~C~~kkK~~ 52 (630)
.|+||.|+..+.+|
T Consensus 30 dw~CP~Cg~~k~~F 43 (46)
T 6rxn_A 30 DWCCPVCGVSKDQF 43 (46)
T ss_dssp TCBCTTTCCBGGGE
T ss_pred CCcCcCCCCcHHHc
Confidence 49999998655443
No 374
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=30.38 E-value=6.2e+02 Score=28.31 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 038527 288 DLTMEQMDEMNKSRNEEI 305 (630)
Q Consensus 288 ~r~meEk~~l~~~yneE~ 305 (630)
+..+.+.+.+...|++.-
T Consensus 434 ~~~~~~~~~~~~~Y~~~~ 451 (592)
T 1f5n_A 434 RLFVQKLQDLKKKYYEEP 451 (592)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455666777777777654
No 375
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=30.31 E-value=24 Score=26.62 Aligned_cols=26 Identities=15% Similarity=0.487 Sum_probs=19.2
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
...+|.|++|... |.....|..|-..
T Consensus 34 ~~~~~~C~~C~~~---f~~~~~L~~H~~~ 59 (70)
T 1x5w_A 34 TDRPFKCNYCSFD---TKQPSNLSKHMKK 59 (70)
T ss_dssp CSCSEECSSSSCE---ESSHHHHHHHHHH
T ss_pred CCCCEeCCCCCCc---cCCHHHHHHHHHH
Confidence 5678999999754 6667778888543
No 376
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=30.07 E-value=34 Score=27.49 Aligned_cols=52 Identities=15% Similarity=0.136 Sum_probs=34.4
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.+.|-|+|.. .+..+|++.|+. |....++.. .+.|++.|.|.+. ..-..|+.
T Consensus 7 ~l~V~nLp~~---------~t~~~l~~~F~~--~~v~~~~i~----~~~g~afV~f~~~-~~a~~Ai~ 58 (88)
T 1wg1_A 7 GILVKNLPQD---------SNCQEVHDLLKD--YDLKYCYVD----RNKRTAFVTLLNG-EQAQNAIQ 58 (88)
T ss_dssp CEEEESCCSS---------CCHHHHHHHTCS--SCCCCEEEE----GGGTEEEECCSCH-HHHHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHhh--CCeEEEEEe----CCCcEEEEEECCH-HHHHHHHH
Confidence 4567888764 367889999999 833344331 5779999999753 33344444
No 377
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.73 E-value=46 Score=28.28 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=32.7
Q ss_pred ceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCC
Q 038527 122 WVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKD 181 (630)
Q Consensus 122 wmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~d 181 (630)
.++.|-|+|.. .+...|++.|+. |..+ .|..+.+ .|+|.|+|...
T Consensus 16 ~~l~V~nLp~~---------~te~~L~~~F~~--fG~v~~v~i~~~----kg~aFVef~~~ 61 (101)
T 2cq1_A 16 RVLHIRKLPGE---------VTETEVIALGLP--FGKVTNILMLKG----KNQAFLELATE 61 (101)
T ss_dssp SEEEEESCCTT---------CCHHHHHHTTTT--TSCEEEEEEETT----TTEEEEEESSH
T ss_pred CEEEEeCCCCC---------CCHHHHHHHHHh--cCCEEEEEEECC----CCEEEEEECCH
Confidence 35777898864 367889999999 8775 4444432 78999999874
No 378
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=29.24 E-value=18 Score=28.12 Aligned_cols=15 Identities=27% Similarity=0.789 Sum_probs=11.3
Q ss_pred CeeeccCCCCCCccc
Q 038527 38 TAYRCPFCRGKKETD 52 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~ 52 (630)
..|.||.|+..+.+|
T Consensus 35 ~dw~CP~Cg~~K~~F 49 (52)
T 1e8j_A 35 DDWACPVCGASKDAF 49 (52)
T ss_dssp TTCCCSSSCCCTTSC
T ss_pred CCCcCCCCCCcHHHc
Confidence 459999998765555
No 379
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=29.21 E-value=26 Score=26.75 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=11.8
Q ss_pred CCeeeccCCCCCCccccchHHHHhh
Q 038527 37 ETAYRCPFCRGKKETDYLYKELLQH 61 (630)
Q Consensus 37 ~~~~~CP~C~~kkK~~y~~~~LLqH 61 (630)
+.+|.|+.|+.. |.....|..|
T Consensus 55 ~~~~~C~~C~~~---f~~~~~l~~H 76 (82)
T 2kmk_A 55 EKPHKCQVCGKA---FSQSSNLITH 76 (82)
T ss_dssp CCCEECTTTSCE---ESSHHHHHHH
T ss_pred CCCCcCCCcchh---hCChHHHHHH
Confidence 445666666422 4455555555
No 380
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.90 E-value=27 Score=26.89 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=17.0
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHA 62 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA 62 (630)
.+.+|.|+.|+.. |.....|..|-
T Consensus 4 ~~k~~~C~~C~k~---f~~~~~L~~H~ 27 (78)
T 2d9h_A 4 GSSGLQCEICGFT---CRQKASLNWHQ 27 (78)
T ss_dssp SCCCEECSSSCCE---ESSHHHHHHHH
T ss_pred CCcCeECCCCCCe---eCCHHHHHHHH
Confidence 4678999999754 55666676664
No 381
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.58 E-value=2e+02 Score=23.68 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=5.5
Q ss_pred HHHHHHHHhchh
Q 038527 394 RRKIIELQKGLD 405 (630)
Q Consensus 394 ~~kil~LEkqLd 405 (630)
-.||..|+.+.|
T Consensus 5 kkKm~~lk~e~d 16 (81)
T 1ic2_A 5 KKKMQMLKLDKE 16 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 382
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.50 E-value=26 Score=29.08 Aligned_cols=27 Identities=19% Similarity=0.486 Sum_probs=19.2
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
..+.+|.|++|+.. |.....|..|-..
T Consensus 52 ~~~k~~~C~~C~k~---F~~~~~L~~H~~~ 78 (85)
T 2lv2_A 52 HAAQVFPCKYCPAT---FYSSPGLTRHINK 78 (85)
T ss_dssp SCSSSEECTTSSCE---ESSHHHHHHHHHT
T ss_pred cCCCccCCCCCCCE---eCCHHHHHHhCcc
Confidence 35678888888643 7778888888543
No 383
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=28.13 E-value=25 Score=27.29 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=21.4
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
..+.+|.|+.|+.. |.....|..|-..
T Consensus 28 t~ekp~~C~~C~k~---F~~~~~L~~H~~~ 54 (60)
T 4gzn_C 28 LGYRPRSCPECGKC---FRDQSEVNRHLKV 54 (60)
T ss_dssp HTCCCEECTTTCCE---ESSHHHHHHHGGG
T ss_pred CCCcCeECCCCCCC---cCCHHHHHHHhCc
Confidence 46789999999754 7788889888543
No 384
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=28.11 E-value=28 Score=27.22 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=14.8
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
+..+|.||.|+.. |.....|..|-.
T Consensus 59 ~~~~~~C~~C~~~---f~~~~~l~~H~~ 83 (90)
T 1a1h_A 59 GEKPFACDICGRK---FARSDERKRHTK 83 (90)
T ss_dssp CCCCEECTTTCCE---ESSHHHHHHHHG
T ss_pred CCCCccCCCCCch---hCCHHHHHHHHH
Confidence 3456777777533 555666666643
No 385
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.90 E-value=1.4e+02 Score=25.01 Aligned_cols=45 Identities=20% Similarity=0.238 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHH
Q 038527 438 MDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELIN 482 (630)
Q Consensus 438 ~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~ 482 (630)
|.+|+.-|+.|.+++...+.+...|-..-..-.+++++-|.+|-+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888888887777766666666777777777643
No 386
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=27.57 E-value=1.3e+02 Score=26.25 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=17.7
Q ss_pred HhhhHHhHHHhhhhhHHHhhc
Q 038527 407 KQALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 407 kQ~LELEi~qlkg~L~vmKh~ 427 (630)
.-++-.||+.++++..||.-|
T Consensus 8 ~~k~~~el~~v~~n~~lL~EM 28 (103)
T 1wrd_A 8 IGKLRSELEMVSGNVRVMSEM 28 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346778889999999999988
No 387
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.52 E-value=28 Score=26.78 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=14.6
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
...+|.|++|+.. |.....|..|-.
T Consensus 43 ~~~~~~C~~C~~~---f~~~~~L~~H~~ 67 (77)
T 2cot_A 43 GEKPYKCDECGKA---FIQRSHLIGHHR 67 (77)
T ss_dssp CSCSEECSSSCCE---ESSHHHHHHHGG
T ss_pred CCcCeeCCCCCCc---cCCHHHHHHHHH
Confidence 3456777777533 555666666643
No 388
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=27.31 E-value=17 Score=28.57 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=12.4
Q ss_pred CeeeccCCCCCCccccc
Q 038527 38 TAYRCPFCRGKKETDYL 54 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y~ 54 (630)
..|.||.|+..+.+|..
T Consensus 35 ~dw~CP~Cga~K~~F~~ 51 (55)
T 2v3b_B 35 ADWVCPDCGVGKIDFEM 51 (55)
T ss_dssp TTCCCTTTCCCGGGEEE
T ss_pred CCCcCCCCCCCHHHcee
Confidence 45999999876655543
No 389
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=27.18 E-value=34 Score=22.53 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=18.2
Q ss_pred cCCeeeccC--CCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPF--CRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~--C~~kkK~~y~~~~LLqHA~ 63 (630)
...+|.|++ |+.. |..-..|..|-.
T Consensus 5 ~~k~~~C~~~~C~k~---f~~~~~L~~H~~ 31 (37)
T 1va1_A 5 KKKQHICHIQGCGKV---YGKTSHLRAHLR 31 (37)
T ss_dssp SCCCEECCSTTCCCE---ESCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCc---cCCHHHHHHHHH
Confidence 457899996 9743 667777888844
No 390
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.07 E-value=51 Score=28.17 Aligned_cols=38 Identities=26% Similarity=0.186 Sum_probs=27.9
Q ss_pred ccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCCh
Q 038527 141 GESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDW 182 (630)
Q Consensus 141 G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw 182 (630)
+.+...|++.|+. |.++.-..+- ..+.|++.|+|...-
T Consensus 28 ~~te~~L~~~F~~--~G~V~~v~i~--~~~rGfaFVeF~~~~ 65 (100)
T 2d9o_A 28 GYSKDVLLRLLQK--YGEVLNLVLS--SKKPGTAVVEFATVK 65 (100)
T ss_dssp SCCHHHHHHHHHT--TSCEEEEEEE--SSSSSEEEEEESCHH
T ss_pred CCCHHHHHHHHHh--cCCEEEEEEc--cCCCCEEEEEECCHH
Confidence 4577899999999 8875333332 357899999998744
No 391
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=27.05 E-value=18 Score=28.21 Aligned_cols=16 Identities=25% Similarity=0.613 Sum_probs=11.6
Q ss_pred CeeeccCCCCCCcccc
Q 038527 38 TAYRCPFCRGKKETDY 53 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y 53 (630)
..|.||.|+..+.+|.
T Consensus 34 ~dw~CP~Cg~~K~~F~ 49 (52)
T 1yk4_A 34 DDWVCPLCGAPKSEFE 49 (52)
T ss_dssp TTCBCTTTCCBGGGEE
T ss_pred CCCcCCCCCCCHHHcE
Confidence 4599999987655543
No 392
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=33.05 E-value=13 Score=31.50 Aligned_cols=56 Identities=21% Similarity=0.195 Sum_probs=36.7
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcc---------cccccCCC--CCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLK---------VHPLWSRR--GHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~k---------v~~l~g~~--Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
.+.|-|+|.. .+...|++.|+. |.++. +....++. -+.|+|.|.|.+.-.. ..|+.
T Consensus 9 ~l~V~nLp~~---------~t~~~l~~~F~~--~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A-~~Ai~ 75 (116)
T 2lcw_A 9 TIFVQGLGEN---------VTIESVADYFKQ--IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSA-KAAID 75 (116)
Confidence 3556777754 245678999999 87765 55555532 3579999999865443 34443
No 393
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=26.97 E-value=29 Score=27.46 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=19.3
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
+..+|.|+.|+.. |.....|..|-..
T Consensus 4 ~~~~~~C~~C~~~---f~~~~~l~~H~~~ 29 (95)
T 2yt9_A 4 GSSGVACEICGKI---FRDVYHLNRHKLS 29 (95)
T ss_dssp CCSCEECSSSCCE---ESSSHHHHHHHHH
T ss_pred CCCCeECCCCCCc---cCChHHHHHHHHh
Confidence 4678999999744 6677788888654
No 394
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.88 E-value=88 Score=25.42 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=17.0
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
...+|.||+|+.. |.....|..|-.
T Consensus 34 ~~~~~~C~~C~~~---f~~~~~l~~H~~ 58 (110)
T 2csh_A 34 GLRPYGCGVCGKK---FKMKHHLVGHMK 58 (110)
T ss_dssp CCCSEECTTTSCE---ESSSHHHHHHHT
T ss_pred CCcCccCCCCCcc---cCCHHHHHHHHH
Confidence 3467888888643 566677777754
No 395
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=26.78 E-value=34 Score=21.25 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=17.2
Q ss_pred eeecc--CCCCCCccccchHHHHhhhhc
Q 038527 39 AYRCP--FCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 39 ~~~CP--~C~~kkK~~y~~~~LLqHA~g 64 (630)
+|.|+ .|+.. |.....|..|-..
T Consensus 2 p~~C~~~~C~k~---f~~~~~L~~H~~~ 26 (31)
T 1sp2_A 2 PFMCTWSYCGKR---FTRSDELQRHKRT 26 (31)
T ss_dssp CCBCCSTTCCCB---CSSHHHHHHHHTT
T ss_pred CcCCcCCCCCcc---cCCHhHHHHHHHH
Confidence 68998 89744 7778888888543
No 396
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=26.68 E-value=31 Score=26.82 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=15.0
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHA 62 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA 62 (630)
+..+|.||.|+.. |.....|..|-
T Consensus 62 ~~~~~~C~~C~~~---f~~~~~l~~H~ 85 (89)
T 2wbs_A 62 GHRPFQCQKCDRA---FSRSDHLALHM 85 (89)
T ss_dssp CCCCEECSSSSCE---ESSHHHHHHHG
T ss_pred CCCCccCCCCCcc---cCCHHHHHHHH
Confidence 3456777777633 55666666664
No 397
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=26.52 E-value=30 Score=26.59 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=18.9
Q ss_pred CeeeccCCCCCCccccchHHHHhhhhc
Q 038527 38 TAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+|.||.|+.. |.....|..|-..
T Consensus 44 ~~~~C~~C~~~---f~~~~~L~~H~~~ 67 (77)
T 2ct1_A 44 AKFHCPHCDTV---IARKSDLGVHLRK 67 (77)
T ss_dssp SSEECSSSSCE---ESSHHHHHHHHHH
T ss_pred CccCCCCCCCc---cCCHHHHHHHHHH
Confidence 68999999744 7778888888654
No 398
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=26.36 E-value=30 Score=30.45 Aligned_cols=86 Identities=14% Similarity=0.206 Sum_probs=51.4
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCC------CceeEEEEeCCChhhhHHHHHHHhhh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRG------HSGFAVVEFYKDWAGFKNAIMFEKSF 195 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~G------h~g~aVV~F~~dw~Gf~nA~~lek~F 195 (630)
+++|.|+.+... +.-.-..+|++.|+. |.++ .|++.-.+.+ ..|++.|+|...-.. .+--..+
T Consensus 22 vl~L~Nm~~~~e----l~ddleedl~eef~k--~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A----~~Ai~~L 91 (118)
T 3ue2_A 22 VMVLRNMVDPKD----IDDDLEGEVTEECGK--FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASET----HKAIQAL 91 (118)
T ss_dssp EEEEESCSCGGG----CCTTHHHHHHHHHTT--TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHH----HHHHHHH
T ss_pred EEEEECCCCHHH----HHHHHHHHHHHHHhc--cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHH----HHHHHHH
Confidence 578999876411 111134789999999 8886 4555444332 249999999875433 3222222
Q ss_pred hhcCCChhhhhhhcCCCccceeeeeecCCCCCC
Q 038527 196 EVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSK 228 (630)
Q Consensus 196 e~~~~GKkdW~~~~~~~~~LYGWvAradDy~s~ 228 (630)
. || | -+++.|..-.+..++|...
T Consensus 92 n----Gr--~----f~GR~i~v~~~~~~~f~~~ 114 (118)
T 3ue2_A 92 N----GR--W----FAGRKVVAEVYDQERFDNS 114 (118)
T ss_dssp T----TC--E----ETTEECEEEEECHHHHHTT
T ss_pred C----CC--E----ECCcEEEEEEcChHhcccc
Confidence 2 21 1 2367788888777777643
No 399
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=26.28 E-value=19 Score=28.45 Aligned_cols=16 Identities=25% Similarity=0.576 Sum_probs=11.8
Q ss_pred CeeeccCCCCCCcccc
Q 038527 38 TAYRCPFCRGKKETDY 53 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y 53 (630)
..|.||.|+..+.+|.
T Consensus 35 ~dw~CP~Cg~~K~~F~ 50 (54)
T 4rxn_A 35 DDWVCPLCGVGKDEFE 50 (54)
T ss_dssp TTCBCTTTCCBGGGEE
T ss_pred CCCcCcCCCCcHHHce
Confidence 4599999987665554
No 400
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=26.13 E-value=6.3e+02 Score=27.02 Aligned_cols=185 Identities=9% Similarity=0.030 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHH
Q 038527 282 ETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSE 361 (630)
Q Consensus 282 e~~~sL~r~meEk~~l~~~yneE~~kmQ~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E 361 (630)
.....|...+.+|-.+-..|...+.++-..++.-+.+ -.+.--+..-+..-+.+++..+..-..
T Consensus 36 ~~~~el~~f~keRa~iE~eYAk~L~kLakk~~~~~~~-~~e~gtl~~aw~~~~~e~e~~a~~H~~--------------- 99 (486)
T 3haj_A 36 RLCSDLMNCLHERARIEKAYAQQLTEWARRWRQLVEK-GPQYGTVEKAWMAFMSEAERVSELHLE--------------- 99 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SSCCSHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCccHHHHHHHHHHHHHHHHHHHHHH---------------
Q ss_pred HHHhHhhhHHHhhhhHHHHHHHHHH--------HHHHHHHHHHHHHHHhch--------hHHhhhHHhHHHhhhhhHHHh
Q 038527 362 KIMNERATLEQKKADEKVWRLAQVH--------KEEKEKLRRKIIELQKGL--------DAKQALELEIEQKRGTIQVMK 425 (630)
Q Consensus 362 ~~kn~lA~~EQ~kade~vlkL~e~h--------krEKe~~~~kil~LEkqL--------d~kQ~LELEi~qlkg~L~vmK 425 (630)
+|..-+...-+.+..+..+| -++...+..-+.+++++| .+|.+.+...++.+.......
T Consensus 100 -----~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~ 174 (486)
T 3haj_A 100 -----VKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREA 174 (486)
T ss_dssp -----HHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhcc
Q 038527 426 HMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEG 487 (630)
Q Consensus 426 h~~~~d~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~~l~~~ 487 (630)
....+-.-..+.++.++.+++.....+...+.--...+.+--....+.......+++.|.++
T Consensus 175 ~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~l 236 (486)
T 3haj_A 175 NSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQF 236 (486)
T ss_dssp HHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 401
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=25.97 E-value=19 Score=30.73 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=12.3
Q ss_pred CeeeccCCCCCCccccc
Q 038527 38 TAYRCPFCRGKKETDYL 54 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y~ 54 (630)
..|.||.|+..+.+|..
T Consensus 59 ddW~CPvCga~K~~F~~ 75 (81)
T 2kn9_A 59 DDWSCPDCGAAKSDFEM 75 (81)
T ss_dssp TTCCCTTTCCCGGGEEE
T ss_pred CCCcCCCCCCCHHHcEE
Confidence 45999999876655543
No 402
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.97 E-value=32 Score=26.47 Aligned_cols=25 Identities=20% Similarity=0.390 Sum_probs=18.9
Q ss_pred CCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 37 ETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 37 ~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
..+|.|+.|+.. |..-..|..|-..
T Consensus 36 ~~~~~C~~C~k~---f~~~~~L~~H~~~ 60 (78)
T 2d9h_A 36 ALRFPCEFCGKR---FEKPDSVAAHRSK 60 (78)
T ss_dssp TCCEECTTTCCE---ESSHHHHHHHHHH
T ss_pred CcccCCCCCCch---hCCHHHHHHHHHH
Confidence 578999999844 6677788888543
No 403
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=25.61 E-value=37 Score=22.16 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=17.9
Q ss_pred cCCeeeccC--CCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPF--CRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~--C~~kkK~~y~~~~LLqHA~ 63 (630)
.+.+|.|++ |+.. |.....|..|-.
T Consensus 3 ~~k~~~C~~~~C~k~---f~~~~~L~~H~~ 29 (38)
T 1bhi_A 3 DDKPFLCTAPGCGQR---FTNEDHLAVHKH 29 (38)
T ss_dssp TCCCEECCCTTTCCE---ESSHHHHHHHHH
T ss_pred CCcceECCCCCCCcc---cCCHHHHHHHHH
Confidence 457899995 9744 666777877753
No 404
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=25.50 E-value=65 Score=29.23 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=36.8
Q ss_pred eEEEecccc-ccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKT-QRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~-e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
++.|-|+|. . .+...|.+.|+. |.+. .++....+ .|++.|.|.+.-. -..|+.
T Consensus 5 ~l~v~nlp~~~---------~~~~~l~~~F~~--~G~i~~v~i~~~~---~g~afV~f~~~~~-a~~A~~ 59 (198)
T 1qm9_A 5 VLLVSNLNPER---------VTPQSLFILFGV--YGDVQRVKILFNK---KENALVQMADGNQ-AQLAMS 59 (198)
T ss_dssp EEEEECCCSSS---------CCHHHHHHHHHT--TCCCSEEECSTTC---SSCCEEECTTTHH-HHHHHH
T ss_pred EEEEeCCCccc---------CCHHHHHHHHHh--cCCEEEEEEEeCC---CCEEEEEECCHHH-HHHHHH
Confidence 567888876 4 356889999999 8764 45555444 6799999986443 345554
No 405
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=25.40 E-value=2.5e+02 Score=23.36 Aligned_cols=43 Identities=26% Similarity=0.279 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHH------HhhhhhHHHhhc
Q 038527 383 AQVHKEEKEKLRRKIIELQKGLDAKQALELEIE------QKRGTIQVMKHM 427 (630)
Q Consensus 383 ~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~------qlkg~L~vmKh~ 427 (630)
++.-..|++++.+++-.++.++.... +-||. +|+.+|+..+-|
T Consensus 6 v~~l~~E~eel~~klk~~~ee~~~~~--eee~~~~~~k~~lek~L~~E~~L 54 (71)
T 1uix_A 6 VANLANEKEELNNKLKEAQEQLSRLK--DEEISAAAIKAQFEKQLLTERTL 54 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445778888888888888887755 55566 666666655443
No 406
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=25.38 E-value=1.3e+02 Score=27.88 Aligned_cols=37 Identities=3% Similarity=0.191 Sum_probs=28.8
Q ss_pred cChhhHHHHHHhCCCCCc-ccccccCCCC--CceeEEEEeCC
Q 038527 142 ESGSKLRDEFRSKGFNPL-KVHPLWSRRG--HSGFAVVEFYK 180 (630)
Q Consensus 142 ~s~~~L~~~~~~~GF~p~-kv~~l~g~~G--h~g~aVV~F~~ 180 (630)
.+-..|+++|+. |.++ .+...+++.. +.|++.|+|..
T Consensus 18 tte~~Lk~~Fs~--fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 18 IQDISIKNYFKK--YGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CCHHHHHHHHHT--TSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred CCHHHHHHHHHh--cCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 367889999999 8774 6666666643 68999999995
No 407
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=25.28 E-value=33 Score=24.68 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=15.9
Q ss_pred eeeccCCCCCCccccchHHHHhh
Q 038527 39 AYRCPFCRGKKETDYLYKELLQH 61 (630)
Q Consensus 39 ~~~CP~C~~kkK~~y~~~~LLqH 61 (630)
-|-||.|. ++.-....|..|
T Consensus 5 GFiCP~C~---~~l~s~~~L~~H 24 (34)
T 3mjh_B 5 GFICPQCM---KSLGSADELFKH 24 (34)
T ss_dssp EEECTTTC---CEESSHHHHHHH
T ss_pred ccCCcHHH---HHcCCHHHHHHH
Confidence 39999996 346778888888
No 408
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.06 E-value=6.1e+02 Score=26.50 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=11.0
Q ss_pred hhhHHHHHHHhhhhhcC
Q 038527 183 AGFKNAIMFEKSFEVDH 199 (630)
Q Consensus 183 ~Gf~nA~~lek~Fe~~~ 199 (630)
.++.+|+.+-..+-..|
T Consensus 200 ~~~~~al~~~~~l~~~g 216 (471)
T 3mq9_A 200 AGAKAGLTFLVDLIKNK 216 (471)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 56777777766665443
No 409
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=24.99 E-value=77 Score=28.02 Aligned_cols=48 Identities=21% Similarity=0.144 Sum_probs=31.2
Q ss_pred eEEEeccccccCCCCcccccChhh----HHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCCh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSK----LRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDW 182 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~----L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw 182 (630)
++.|-|++.. .+... |.+.|+. |.++ .|... ......|++.|.|...-
T Consensus 31 ~LfV~nL~~~---------~~e~~L~~~L~~~F~~--~G~I~~v~i~-~~~~~rG~aFV~F~~~~ 83 (127)
T 2a3j_A 31 VVLITNINPE---------VPKEKLQALLYALASS--QGDILDIVVD-LSDDNSGKAYIVFATQE 83 (127)
T ss_dssp EEEEESCCTT---------SCHHHHHHHHHHHHHH--HSCEEEEEEC-CCCSSCCCEEEEESSHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHHhcc--CCCeEEEEec-cCCCcCCEEEEEECCHH
Confidence 5778888754 13344 4468999 8876 33332 23456899999997643
No 410
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=24.73 E-value=35 Score=27.00 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=14.3
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
...+|.|++|+.. |.....|..|-.
T Consensus 61 ~~~~~~C~~C~~~---f~~~~~l~~H~~ 85 (96)
T 2dmd_A 61 DERPFKCQICPYA---SRNSSQLTVHLR 85 (96)
T ss_dssp CCCCEECSSSSCE---ESSHHHHHHHHT
T ss_pred CCCCccCCCCCCc---cCCHHHHHHHHH
Confidence 3455667776533 555666666643
No 411
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.67 E-value=1.5e+02 Score=29.32 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhchhHHhhhHHhHHHhhhhhHHHhhc
Q 038527 389 EKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 389 EKe~~~~kil~LEkqLd~kQ~LELEi~qlkg~L~vmKh~ 427 (630)
|.+.+|..|.+|+.++ ..|.-|+++|+...++..||
T Consensus 116 EN~~Lh~~ie~l~eEi---~~LkeEn~eLkeLae~~q~l 151 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEI---ARLKKENKELAEVAEHVQYM 151 (209)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3344444444443332 25666677777777777775
No 412
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=24.54 E-value=83 Score=30.32 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=34.6
Q ss_pred eEEEeccccccCCCCcccccChhhHH----HHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLR----DEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAI 189 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~----~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~ 189 (630)
.+.|-|++.. .+...|+ +.|+. |.++.-..+....-+.|++.|.|.+.-. -..|+
T Consensus 11 ~l~V~nlp~~---------~~~~~l~~~L~~~F~~--~G~i~~v~~~~~~~~~g~afV~f~~~~~-a~~A~ 69 (282)
T 3pgw_A 11 TIYINNLNEK---------IKKDELKKSLYAIFSQ--FGQILDILVSRSLKMRGQAFVIFKEVSS-ATNAL 69 (282)
T ss_pred EEEEeCCCCC---------CCHHHHHHHHHHHHhc--cCCeEEEEEcCCCCcceEEEEEECCHHH-HHHHH
Confidence 4668888764 2455655 78988 8775433332344477999999975443 34444
No 413
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=24.45 E-value=85 Score=27.04 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=35.3
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
++-|-|+|.. .+..+|.+.|+. |.++ .|..+- ..|+|.|+|...-. -..|..
T Consensus 23 ~l~V~NLp~~---------~te~~L~~lF~~--fG~V~~v~i~~----~kg~AFVef~~~~~-A~~Av~ 75 (100)
T 3r27_A 23 VVHIRGLIDG---------VVEADLVEALQE--FGPISYVVVMP----KKRQALVEFEDVLG-ACNAVN 75 (100)
T ss_dssp EEEEESCCTT---------CCHHHHHHHHGG--GSCEEEEEEET----TTTEEEEEESSHHH-HHHHHH
T ss_pred EEEEeCCCCC---------CCHHHHHHHHhc--cCCEEEEEEEc----CCCEEEEEECCHHH-HHHHHH
Confidence 4667888764 367889999999 9875 344432 35899999986433 344443
No 414
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=24.44 E-value=12 Score=24.00 Aligned_cols=22 Identities=27% Similarity=0.550 Sum_probs=15.4
Q ss_pred eeeccCCCCCCccccchHHHHhhhh
Q 038527 39 AYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 39 ~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
+|.|+.|+.. |..-..|..|-.
T Consensus 2 p~~C~~C~k~---f~~~~~L~~H~~ 23 (32)
T 2kfq_A 2 AFACPACPKR---FMRSDALSKHIK 23 (32)
T ss_dssp CSSSSSSCTT---HHHHHTTSSSTT
T ss_pred CCCCCCCCcc---cCCHHHHHHHHH
Confidence 6899999744 555666777743
No 415
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.31 E-value=30 Score=28.65 Aligned_cols=31 Identities=19% Similarity=0.194 Sum_probs=23.7
Q ss_pred ceEEecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 31 LKVEVSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 31 ~kVk~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
+.+..+..+|.||.|+.. |.....|..|-..
T Consensus 20 ~~~~~~~~~h~C~~Cgk~---F~~~~~L~~H~~~ 50 (85)
T 2lv2_A 20 LGLSASAECHLCPVCGES---FASKGAQERHLRL 50 (85)
T ss_dssp CSSCCCCTTEECTTSCCE---ESSHHHHHHHHHT
T ss_pred CCCCCCCCCEECCCCCCC---cCcHHHHhhhhhh
Confidence 345567788999999844 7788889999654
No 416
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=24.28 E-value=37 Score=27.01 Aligned_cols=22 Identities=18% Similarity=0.387 Sum_probs=11.5
Q ss_pred CCeeeccCCCCCCccccchHHHHhh
Q 038527 37 ETAYRCPFCRGKKETDYLYKELLQH 61 (630)
Q Consensus 37 ~~~~~CP~C~~kkK~~y~~~~LLqH 61 (630)
..+|.|+.|+.. |.....|..|
T Consensus 73 ~~~~~C~~C~~~---f~~~~~l~~H 94 (100)
T 2ebt_A 73 AKPFQCGVCNRS---FSRSDHLALH 94 (100)
T ss_dssp CCSCBCSSSCCB---CSSHHHHHHH
T ss_pred CCCeECCCCcCc---cCCHHHHHHH
Confidence 345666666432 4445555555
No 417
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.19 E-value=37 Score=26.20 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=20.1
Q ss_pred EecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 34 EVSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 34 k~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
-..+.+|.|+.|+.. |.....|..|-.
T Consensus 10 H~~~k~~~C~~C~~~---f~~~~~l~~H~~ 36 (86)
T 1x6h_A 10 HTGEKPYACSHCDKT---FRQKQLLDMHFK 36 (86)
T ss_dssp CCCCCCEECSSSSCE---ESSHHHHHHHHH
T ss_pred ecCCCCCcCCCCCCc---cCCHHHHHHHHH
Confidence 346788999999754 666778888854
No 418
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=23.78 E-value=65 Score=30.36 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=33.4
Q ss_pred EEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhh
Q 038527 124 GIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAG 184 (630)
Q Consensus 124 gII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~G 184 (630)
+.|-|++.. .+...|.+.|+. |..+.-..++.+ ...|++.|+|...-..
T Consensus 49 l~VgNL~~~---------vted~L~~~Fs~--fG~V~~V~i~~k-~~rgfAFVeF~d~~~A 97 (164)
T 1sjr_A 49 IIVENLFYP---------VTLDVLHQIFSK--FGTVLKIITFTK-NNQFQALLQYADPVSA 97 (164)
T ss_dssp EEECSCCSC---------CCHHHHHHHHHH--HSCEEEEEEEES-SSCEEEEEEESCHHHH
T ss_pred EEEeCcCCC---------CCHHHHHHHHHh--cCCEEEEEEEeC-CCCCEEEEEECCHHHH
Confidence 557787653 356789999999 887644444332 2568999999765443
No 419
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.63 E-value=39 Score=25.34 Aligned_cols=25 Identities=12% Similarity=0.449 Sum_probs=18.8
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
+.++|.|++|+.. |. ...|..|-..
T Consensus 7 ~~~~~~C~~C~k~---f~-~~~L~~H~~~ 31 (66)
T 2eod_A 7 GKRTQPCTYCTKE---FV-FDTIQSHQYQ 31 (66)
T ss_dssp CCCEEECSSSCCE---EE-HHHHHHHHHH
T ss_pred CCCCeeccccCCc---cC-HHHHHHHHHH
Confidence 5678999999643 66 7888888654
No 420
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=23.32 E-value=38 Score=26.73 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=19.6
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
+..+|.|+.|+.. |.....|..|-..
T Consensus 28 ~~~~~~C~~C~k~---f~~~~~L~~H~~~ 53 (88)
T 1llm_C 28 GEKPFACDICGRK---FARSDERKRHRDI 53 (88)
T ss_dssp CCCCEECTTTCCE---ESSHHHHHHHHHH
T ss_pred CCCCccCCCCCCc---cCCHHHHHHHHHH
Confidence 4568999999744 6777888888554
No 421
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=23.29 E-value=23 Score=29.26 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=12.9
Q ss_pred CeeeccCCCCCCccccch
Q 038527 38 TAYRCPFCRGKKETDYLY 55 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y~~ 55 (630)
..|.||.|...+.+|..+
T Consensus 39 ddw~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 39 DSFMCPACRSPKNQFKSI 56 (70)
T ss_dssp TTCBCTTTCCBGGGEEEC
T ss_pred CCCcCCCCCCCHHHceEc
Confidence 459999998766655543
No 422
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.28 E-value=39 Score=25.96 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=20.3
Q ss_pred ecCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 35 VSETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
....+|.|+.|+.. |.....|..|-..
T Consensus 14 ~~~~~~~C~~C~~~---f~~~~~l~~H~~~ 40 (77)
T 2cot_A 14 RERRRYKCDECGKS---FSHSSDLSKHRRT 40 (77)
T ss_dssp CCSCSSBCSSSCCB---CSCHHHHHHHHTT
T ss_pred CCCCCEECCCCCcc---cCCHHHHHHHHHH
Confidence 35678999999744 6677788888543
No 423
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=23.20 E-value=1.4e+02 Score=28.13 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHhhhhHHH---HHHH-HHHHHHHHHHHHHHHH
Q 038527 324 EKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKV---WRLA-QVHKEEKEKLRRKIIE 399 (630)
Q Consensus 324 ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~kade~v---lkL~-e~hkrEKe~~~~kil~ 399 (630)
+++..+|.+....+|.-+.||+- +-+++..|..+..... .+-.| +..+ ..=..|+...+.++-+
T Consensus 28 e~l~~~l~~~i~q~d~elqQLef-------q~kr~~~e~~~q~~~~-----~~p~~~~qi~~iq~q~~~ek~~r~e~k~~ 95 (150)
T 4dci_A 28 EEAEREISNGIANADQQLAQLEQ-------EGQTVVDQVRRQSANP-----LDPRVQEQVANIQQQVAGKRSELEEQKRN 95 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTSCT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhccCCC-----CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777764 2233333333310000 00000 1111 1223677778888999
Q ss_pred HHhchhHHhhhHHhHHHhhhhhHHHhhc
Q 038527 400 LQKGLDAKQALELEIEQKRGTIQVMKHM 427 (630)
Q Consensus 400 LEkqLd~kQ~LELEi~qlkg~L~vmKh~ 427 (630)
|..||.+=+.|+|.-+=..|+++-+=-+
T Consensus 96 l~~ql~qv~~L~lGsEv~qg~vE~~v~V 123 (150)
T 4dci_A 96 LLQQQAQVRELEMDQIVEQGQLESSCEI 123 (150)
T ss_dssp HHHHHHHHHHSCTTCEEEEEEEEECCEE
T ss_pred HHHHHHHHhcCCCcCEEeeceeeEEEEE
Confidence 9999999999999877777777655444
No 424
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=23.09 E-value=23 Score=30.24 Aligned_cols=13 Identities=31% Similarity=0.851 Sum_probs=10.1
Q ss_pred CeeeccCCCCCCc
Q 038527 38 TAYRCPFCRGKKE 50 (630)
Q Consensus 38 ~~~~CP~C~~kkK 50 (630)
..+|||.|++-+=
T Consensus 25 ~~LRCp~Cqnqsi 37 (84)
T 2hl7_A 25 QELRCPKCQNQDI 37 (84)
T ss_dssp HHEECTTSSSCBT
T ss_pred HcCcCCCCCCCch
Confidence 3599999998653
No 425
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=23.08 E-value=72 Score=30.12 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=36.5
Q ss_pred eEEEecccc-ccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527 123 VGIVANIKT-QRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM 190 (630)
Q Consensus 123 mgII~Ni~~-e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~ 190 (630)
++.|-|+|. . .+...|.+.|+. |.++ .++..... .|++.|.|.+- ..-..|+.
T Consensus 36 ~l~V~nLp~~~---------~te~~L~~~F~~--~G~i~~v~i~~~~---~g~afV~F~~~-~~A~~Ai~ 90 (229)
T 2adc_A 36 VLLVSNLNPER---------VTPQSLFILFGV--YGDVQRVKILFNK---KENALVQMADG-NQAQLAMS 90 (229)
T ss_dssp EEEEESCCTTT---------CCHHHHHHHHHH--HTCEEEEEECCTT---SCCEEEEESCH-HHHHHHHH
T ss_pred EEEEeCCCccc---------CCHHHHHHHHHh--CCCeEEEEEEECC---CCEEEEEECCH-HHHHHHHH
Confidence 467889886 4 256889999999 8764 45555444 68999999863 33344543
No 426
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=22.88 E-value=22 Score=30.86 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=10.0
Q ss_pred CeeeccCCCCCCc
Q 038527 38 TAYRCPFCRGKKE 50 (630)
Q Consensus 38 ~~~~CP~C~~kkK 50 (630)
..+|||.|++-+=
T Consensus 22 ~~LRCpvCqnqsI 34 (90)
T 2kw0_A 22 EELRCPKCQNNSI 34 (90)
T ss_dssp HSSBCSCTTSCTT
T ss_pred HcCcCCCCCCCch
Confidence 3589999998653
No 427
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=22.84 E-value=72 Score=28.94 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=41.3
Q ss_pred eEEEeccccccCCCCcccccChhhHHHHHHhCCC---CCcccccccCCCCCceeEEEEeCCChhhhHHHHHHHhh
Q 038527 123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGF---NPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKS 194 (630)
Q Consensus 123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF---~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~lek~ 194 (630)
++-|.|+|-. ++...++..+.. | .+...+-++-.++|.| |||+|...-+.=+-+++|+..
T Consensus 23 tiaL~~ipDt---------vndarIr~lve~--~~~i~~g~i~KI~L~pDH~G-Aivef~d~~~AgKasLaL~G~ 85 (117)
T 2l9w_A 23 LICLFPLSDK---------VSPSLICQFLQE--EIHINEKDIRKILLVSDFNG-AIIIFRDSKFAAKMLMILNGS 85 (117)
T ss_dssp CEEEECCCTT---------CCHHHHHHHHHH--HTCCCTTTCSEEEEETTTTE-EEEECSCHHHHHHHHHHHSSE
T ss_pred EEEEecCCCC---------CCHHHHHHHHhh--hhccCccceeEEEEecCCCc-eEEEEccchhhHHHHhhcCCe
Confidence 5668888865 345566665555 4 3334445555678878 999999988888888887653
No 428
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=22.59 E-value=5.2e+02 Score=24.85 Aligned_cols=71 Identities=13% Similarity=0.074 Sum_probs=48.8
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 270 DMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQ-QSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQY 346 (630)
Q Consensus 270 n~~l~elE~k~~e~~~sL~r~meEk~~l~~~yneE~~kmQ-~~a~~~~~~i~~e~ekl~~eLe~k~~eL~~r~k~L~~ 346 (630)
..++.+++..+...-.++...+++-..|..+|..-...|+ ..+..++. .-|...|...+.+.|.-|..|.+
T Consensus 78 ae~ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp------~~L~~~L~~a~~e~eeeS~~l~~ 149 (192)
T 2p22_C 78 FKQLEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGD------IALKKKLEQNTKKLDEESSQLET 149 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344577777777888888888888888888866666663 44444443 34556677777777877777765
No 429
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=22.57 E-value=3e+02 Score=22.83 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHhhhHHhHH----HhhhhhHHHhhc
Q 038527 382 LAQVHKEEKEKLRRKIIELQKGLDAKQALELEIE----QKRGTIQVMKHM 427 (630)
Q Consensus 382 L~e~hkrEKe~~~~kil~LEkqLd~kQ~LELEi~----qlkg~L~vmKh~ 427 (630)
-++.-..|++++.+++-.++.++.... +-||. +|+.+|+.-+-+
T Consensus 7 ~i~~l~~E~eel~~klk~~~ee~~~~~--eee~~~~~~~lek~L~~E~~L 54 (71)
T 1s1c_X 7 DIEILRRENEELTEKMKKAEEEYKLEK--EEEISNLKAAFEKNINTERTL 54 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 345555788889988888888887765 77777 777777655544
No 430
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=22.57 E-value=18 Score=31.28 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=11.7
Q ss_pred CeeeccCCCCCCccccc
Q 038527 38 TAYRCPFCRGKKETDYL 54 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y~ 54 (630)
..|.||.|+..+.+|..
T Consensus 67 ddW~CPvCga~K~~F~~ 83 (87)
T 1s24_A 67 DDWCCPDCGATKEDYVL 83 (87)
T ss_dssp TTCCCSSSCCCGGGEEE
T ss_pred CCCCCCCCCCCHHHhhh
Confidence 34899999876555543
No 431
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.49 E-value=40 Score=23.68 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=19.2
Q ss_pred eEEecCCeeecc--CCCCCCccccchHHHHhhhh
Q 038527 32 KVEVSETAYRCP--FCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 32 kVk~~~~~~~CP--~C~~kkK~~y~~~~LLqHA~ 63 (630)
.+-.++.+|.|+ .|+.. |..-..|..|-.
T Consensus 11 ~~H~~~k~~~C~~~~C~k~---F~~~~~L~~H~~ 41 (47)
T 1ncs_A 11 VKEMPDKTFECLFPGCTKT---FKRRYNIRSHIQ 41 (47)
T ss_dssp CEEETTTEEECCCTTCCCE---ECSSSSHHHHHH
T ss_pred hccCCCCCeECCCCCCCCc---cCCHHHHHHHHH
Confidence 344678899996 59744 555566666743
No 432
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.48 E-value=42 Score=27.42 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=20.8
Q ss_pred ceEEecCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 31 LKVEVSETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 31 ~kVk~~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
..+-..+.+|.|+.|+.. |.....|..|-.
T Consensus 8 ~~~h~~~~~~~C~~C~~~---f~~~~~l~~H~~ 37 (107)
T 1wjp_A 8 ASPVENKEVYQCRLCNAK---LSSLLEQGSHER 37 (107)
T ss_dssp CCCCCCCCCCBCTTTCCB---CSSHHHHHHHHH
T ss_pred CcccCCCcCeECCCCCCc---cCCHHHHHHHHH
Confidence 344457788999999754 666677777743
No 433
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=22.27 E-value=62 Score=31.28 Aligned_cols=39 Identities=10% Similarity=-0.015 Sum_probs=32.2
Q ss_pred HHHHHHHHHhhhhCCCCCcccccccccccccccchHHHH
Q 038527 576 NAVALAQSEMNQYNPSGRYTIPELWNFKENRKATLKEGA 614 (630)
Q Consensus 576 ~aV~~Al~E~neyN~sgry~v~elWN~ke~rkAtl~E~v 614 (630)
..+..|+..||-+...||.+.-.+..-++.|++.+...+
T Consensus 237 ~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~ 275 (284)
T 3smz_A 237 EMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALI 275 (284)
T ss_dssp HHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhh
Confidence 467789999999999999888888888888888777654
No 434
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=22.12 E-value=45 Score=26.32 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=16.6
Q ss_pred CeeeccCCCCCCccccchHHHHhhhh
Q 038527 38 TAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.+|.|+.|+.. |.....|..|-.
T Consensus 64 ~~~~C~~C~~~---f~~~~~L~~H~~ 86 (95)
T 2yt9_A 64 KPYICQSCGKG---FSRPDHLNGHIK 86 (95)
T ss_dssp SSBCCSSSCCC---BSSHHHHHHHHH
T ss_pred CceECCCccch---hCCHHHHHHHHH
Confidence 67888888643 667777888853
No 435
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=21.80 E-value=58 Score=35.64 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=29.0
Q ss_pred ChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChh
Q 038527 143 SGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWA 183 (630)
Q Consensus 143 s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~ 183 (630)
|-.+|.++|+. |.|+.-.+.|-..| -||||+|...-+
T Consensus 65 ~~~~l~~y~~~--~g~i~~~~~~~~~g--~~~~vef~~~~~ 101 (464)
T 3pq1_A 65 SENKFLKYLSQ--FGPINNHFFYESFG--LYAVVEFCQKES 101 (464)
T ss_dssp --CHHHHHHGG--GSCCCCEEEECSSS--EEEEEECC---C
T ss_pred CHHHHHHHHHh--cCCcceEEEEccCC--eEEEEEeCCHHH
Confidence 67899999999 99999999998777 699999998643
No 436
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=21.61 E-value=2.6e+02 Score=31.14 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038527 325 KATSQLEAQKMQLEEHEKQLQY 346 (630)
Q Consensus 325 kl~~eLe~k~~eL~~r~k~L~~ 346 (630)
++|.+.|..+.+|+.|..+++.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~ 349 (575)
T 2i1j_A 328 AARERAEKKQQEYQDRLRQMQE 349 (575)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3455666666667666666654
No 437
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=21.17 E-value=43 Score=26.42 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=16.8
Q ss_pred CeeeccCCCCCCccccchHHHHhhhh
Q 038527 38 TAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 38 ~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.+|.|+.|+.. |..-..|..|-.
T Consensus 2 k~~~C~~C~k~---f~~~~~L~~H~~ 24 (88)
T 1llm_C 2 KPFQCRICMRN---FSRSDHLTTHIR 24 (88)
T ss_dssp CCEECTTTCCE---ESCHHHHHHHHH
T ss_pred CCCcCCCCCCc---cCCHHHHHHHHH
Confidence 57999999754 566677777744
No 438
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=20.92 E-value=48 Score=26.40 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=19.9
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhhc
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHASD 64 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~g 64 (630)
.+.+|.|+.|... |..-..|.+|-..
T Consensus 10 ~ekpy~C~~CgK~---F~~~s~L~~H~r~ 35 (66)
T 2epp_A 10 EAGILPCGLCGKV---FTDANRLRQHEAQ 35 (66)
T ss_dssp CCCCCCCTTTCCC---CSCHHHHHHHHHH
T ss_pred CccCcCCCCCCCc---cCCHHHHHhhhhh
Confidence 5678999999743 7777888888554
No 439
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=20.81 E-value=38 Score=26.97 Aligned_cols=17 Identities=24% Similarity=0.739 Sum_probs=12.7
Q ss_pred eEEecCCeeeccCCCCC
Q 038527 32 KVEVSETAYRCPFCRGK 48 (630)
Q Consensus 32 kVk~~~~~~~CP~C~~k 48 (630)
.|-...+.|.||||...
T Consensus 26 ~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 26 QVDYRAKLWACNFCYQR 42 (59)
T ss_dssp EEEGGGTEEECSSSCCE
T ss_pred EEECCCCEEEcccCCCc
Confidence 55555679999999743
No 440
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.76 E-value=8e+02 Score=26.32 Aligned_cols=32 Identities=6% Similarity=0.023 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHH
Q 038527 260 TNLTRTLEVKDMRYKEMEMKYLETSTYLDLTM 291 (630)
Q Consensus 260 ~~L~n~I~~kn~~l~elE~k~~e~~~sL~r~m 291 (630)
.+|.+.|+.-+..|..+...+..+..-...++
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~ 94 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIV 94 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 55666666666666666555555554444444
No 441
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.76 E-value=44 Score=27.54 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=14.7
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
.+.+|.||.|+.. |.....|..|-.
T Consensus 91 ~~~~~~C~~C~~~---f~~~~~l~~H~~ 115 (124)
T 2dlq_A 91 GEMPYKCSSCSQQ---FMQKKDLQSHMI 115 (124)
T ss_dssp SSCSEECSSSCCE---ESSHHHHHHHHH
T ss_pred CCCCccCCCccch---hCCHHHHHHHHH
Confidence 3455777777533 555666666644
No 442
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.61 E-value=46 Score=27.39 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=18.7
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
+..+|.||.|+.. |.....|..|-.
T Consensus 4 ~~~~~~C~~C~~~---f~~~~~l~~H~~ 28 (124)
T 2dlq_A 4 GSSGVECPTCHKK---FLSKYYLKVHNR 28 (124)
T ss_dssp CCSSCCCTTTCCC---CSSHHHHHHHHH
T ss_pred CCCCCCCCCCCCc---CCCHHHHHHHHH
Confidence 4578999999744 667778888854
No 443
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=20.44 E-value=41 Score=20.06 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=16.1
Q ss_pred eeecc--CCCCCCccccchHHHHhhhh
Q 038527 39 AYRCP--FCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 39 ~~~CP--~C~~kkK~~y~~~~LLqHA~ 63 (630)
+|.|+ .|+.. |.....|..|-.
T Consensus 2 ~~~C~~~~C~k~---f~~~~~l~~H~~ 25 (29)
T 2ab3_A 2 VYVCHFENCGRS---FNDRRKLNRHKK 25 (29)
T ss_dssp CEEECSTTTCEE---ESSHHHHHHHHG
T ss_pred CCCCcCCcCcCc---cCCHHHHHHHHH
Confidence 68999 99744 666777888843
No 444
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=20.41 E-value=9.1e+02 Score=26.80 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHhhHHHHHHhHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038527 321 LEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIEL 400 (630)
Q Consensus 321 ~e~ekl~~eLe~k~~eL~~r~k~L~~~~a~~~~er~kl~~E~~kn~lA~~EQ~kade~vlkL~e~hkrEKe~~~~kil~L 400 (630)
.++++|+..|.....++.+=...++.+.++-. + .+-||+.|..+.-.+. +||..+.+.+-.+
T Consensus 349 ae~~~lrQRlddArNEItsaeSaInslqaqvS--a------------~t~e~k~A~d~l~a~~----kek~~~~n~~a~~ 410 (602)
T 1cii_A 349 AEWDKLRQRLLDARNKITSAESAVNSARNNLS--A------------RTNEQKHANDALNALL----KEKENIRNQLSGI 410 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H------------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H------------HHHHHHHHHHHHHHHH----HHHHHHHHHhhhh
Confidence 35677776666666666665555554332211 1 1223333333222111 4566666777777
Q ss_pred HhchhHHhhhHHhHHHhhhhhHHHhhcccccHH-HHHHHHHHHHHHHH
Q 038527 401 QKGLDAKQALELEIEQKRGTIQVMKHMREENVE-VQEKMDAIIKEIKE 447 (630)
Q Consensus 401 EkqLd~kQ~LELEi~qlkg~L~vmKh~~~~d~~-~~~k~~~l~~~l~e 447 (630)
.+...++|+=+-|..+++..+..+--++.+=++ +-.|...|-.+|.+
T Consensus 411 ~~KiAE~KrK~dE~~aIKDAVkfTAdFykkIsEkyGeKykkIAkELAe 458 (602)
T 1cii_A 411 NQKIAEEKRKQDELKATKDAINFTTEFLKSVSEKYGAKAEQLAREMAG 458 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777888898888877665332221 23445566666655
No 445
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=20.19 E-value=51 Score=26.65 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=18.7
Q ss_pred cCCeeeccCCCCCCccccchHHHHhhhh
Q 038527 36 SETAYRCPFCRGKKETDYLYKELLQHAS 63 (630)
Q Consensus 36 ~~~~~~CP~C~~kkK~~y~~~~LLqHA~ 63 (630)
...+|.|+.|+.. |.....|..|-.
T Consensus 14 ~~~~~~C~~C~~~---f~~~~~l~~H~~ 38 (106)
T 2ee8_A 14 TKKEFICKFCGRH---FTKSYNLLIHER 38 (106)
T ss_dssp CCCCCBCSSSCCB---CSSHHHHHHHHH
T ss_pred CCcCeECCCCCCc---cCCHHHHHHHHH
Confidence 5678999999754 666777888854
No 446
>2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2
Probab=20.16 E-value=1.7e+02 Score=23.11 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=23.1
Q ss_pred hhhHHHHHHhCCCCCcc-cccccCCCCCceeEEEEeCC
Q 038527 144 GSKLRDEFRSKGFNPLK-VHPLWSRRGHSGFAVVEFYK 180 (630)
Q Consensus 144 ~~~L~~~~~~~GF~p~k-v~~l~g~~Gh~g~aVV~F~~ 180 (630)
...++.+|..+||.|+. ++++...+ ..|-.+|....
T Consensus 19 ~~~~~~rL~~lGl~pG~~v~v~~~~p-~~gpi~v~v~~ 55 (75)
T 2gcx_A 19 SPAYRQKLLSLGMLPGSSFHVVRVAP-LGDPVHIETRR 55 (75)
T ss_dssp CHHHHHHHTTTTCCSSEEEEECCCCS-SCCEEEEEETT
T ss_pred CHHHHHHHHHCCCCCCCEEEEEEeCC-CCCCEEEEECC
Confidence 46788899999999974 55544322 12555666543
No 447
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.13 E-value=3.1e+02 Score=29.26 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHhhccHHHHHHHHHHHHhhhcc-CCccccc-------eeecCCC
Q 038527 432 VEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEG-RTRATIG-------VKRMGEI 501 (630)
Q Consensus 432 ~~~~~k~~~l~~~l~ek~~~l~~~e~~nq~L~~ker~sndElq~ark~li~~l~~~-~~~~~Ig-------iKrmGel 501 (630)
.+++..+.+|.+++.+.+.++ .++++....++-.+..+ ...+++| |++-|+-
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~ipN~~~~~vp~g~e~~n~~~~~~g~~ 126 (421)
T 1ses_A 67 EALIARGKALGEEAKRLEEAL------------------REKEARLEALLLQVPLPPWPGAPVGGEEANREIKRVGGP 126 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHTTCCCCCCTTSCSSSGGGCEEEEEESCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhCCCCCCCCCCCCCccccEEEEEeCCC
Confidence 345666666666666665555 35555566666677776 4555665 8888863
No 448
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.12 E-value=48 Score=27.06 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=18.4
Q ss_pred ecCCeeeccCCCCCCcccc-chHHHHhhhh
Q 038527 35 VSETAYRCPFCRGKKETDY-LYKELLQHAS 63 (630)
Q Consensus 35 ~~~~~~~CP~C~~kkK~~y-~~~~LLqHA~ 63 (630)
....+|.|+.|+.. |. ....|..|-.
T Consensus 20 ~~~~~~~C~~C~k~---f~~~~~~L~~H~~ 46 (98)
T 2gqj_A 20 HERGEAVCPTCNVV---TRKTLVGLKKHME 46 (98)
T ss_dssp TTTSCCCCTTTCCC---CSSCSHHHHHHHH
T ss_pred ccCCCcCCCCCCCC---hhhhHHHHHHHHH
Confidence 35688999999855 55 5666766643
Done!