BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038528
         (91 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9PA69|RLMKL_XYLFA Ribosomal RNA large subunit methyltransferase K/L OS=Xylella
           fastidiosa (strain 9a5c) GN=rlmL PE=3 SV=2
          Length = 724

 Score = 31.2 bits (69), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 4   ADEDDIRTLDIR--RGDVYRLQPGSVFYIESNLEQEREKLRIYAIFSNTEDDS 54
           AD+ D++   +R  R  V RL PG V Y  +N  + R  +   A F+  E+ S
Sbjct: 650 ADDFDVQRDHVRLLRAAVARLTPGGVLYFSNNFRRFRLDVDAVAAFAQCEEIS 702


>sp|Q87A16|RLMKL_XYLFT Ribosomal RNA large subunit methyltransferase K/L OS=Xylella
           fastidiosa (strain Temecula1 / ATCC 700964) GN=rlmL PE=3
           SV=2
          Length = 724

 Score = 30.8 bits (68), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 4   ADEDDIRTLDIR--RGDVYRLQPGSVFYIESNLEQEREKLRIYAIFSNTEDDS 54
           AD+ D++   +R  R  V RL PG V Y  +N  + R  +   A F+  E+ S
Sbjct: 650 ADDFDVQRDHVRLLRAAVARLTPGGVLYFSNNFRRFRLDVDAVAAFAQCEEIS 702


>sp|B2IA87|RLMKL_XYLF2 Ribosomal RNA large subunit methyltransferase K/L OS=Xylella
           fastidiosa (strain M23) GN=rlmL PE=3 SV=2
          Length = 724

 Score = 30.8 bits (68), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 4   ADEDDIRTLDIR--RGDVYRLQPGSVFYIESNLEQEREKLRIYAIFSNTEDDS 54
           AD+ D++   +R  R  V RL PG V Y  +N  + R  +   A F+  E+ S
Sbjct: 650 ADDFDVQRDHVRLLRAAVARLTPGGVLYFSNNFRRFRLDVDAVAAFAQCEEIS 702


>sp|B0U5Z5|RLMKL_XYLFM Ribosomal RNA large subunit methyltransferase K/L OS=Xylella
           fastidiosa (strain M12) GN=rlmL PE=3 SV=1
          Length = 724

 Score = 30.8 bits (68), Expect = 2.4,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 4   ADEDDIRTLDIR--RGDVYRLQPGSVFYIESNLEQEREKLRIYAIFSNTEDDS 54
           AD+ D++   +R  R  V RL PG V Y  +N  + R  +   A F+  E+ S
Sbjct: 650 ADDFDVQRDHVRLLRAAVARLTPGGVLYFSNNFRRFRLDVDAVAAFAQCEEIS 702


>sp|Q9CBJ6|Y1910_MYCLE UPF0336 protein ML1910 OS=Mycobacterium leprae (strain TN)
          GN=ML1910 PE=3 SV=1
          Length = 159

 Score = 30.8 bits (68), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 33 NLEQEREKLRIYAIFSNTEDDSYFE 57
          + E EREK+R YA+    ED SYFE
Sbjct: 17 HYEVEREKIREYAVAVQNEDTSYFE 41


>sp|P47635|Y395_MYCGE Uncharacterized lipoprotein MG395 OS=Mycoplasma genitalium (strain
           ATCC 33530 / G-37 / NCTC 10195) GN=MG395 PE=3 SV=1
          Length = 524

 Score = 29.6 bits (65), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 34  LEQEREKLRIYAIFSNTEDDSYFEPVIGAYTSISDLILGFDRKVLQSAFKRAVLLLGY 91
           LE   E LR + IF     + + +P I  Y S+ D    F+ K L+  +  +  LLGY
Sbjct: 240 LELNLENLRDWQIF-----NEFIKPAINTYKSLGDSTNIFETKDLEQHWNHSHYLLGY 292


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.141    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,892,547
Number of Sequences: 539616
Number of extensions: 1148295
Number of successful extensions: 3641
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3639
Number of HSP's gapped (non-prelim): 11
length of query: 91
length of database: 191,569,459
effective HSP length: 61
effective length of query: 30
effective length of database: 158,652,883
effective search space: 4759586490
effective search space used: 4759586490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)