Query 038532
Match_columns 164
No_of_seqs 132 out of 756
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 20:57:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v7d_A Suppressor of kinetocho 100.0 9.5E-56 3.3E-60 330.5 14.4 157 1-163 4-168 (169)
2 2p1m_A SKP1-like protein 1A; F 100.0 1.6E-53 5.6E-58 316.0 3.3 157 1-163 1-160 (160)
3 2ast_A S-phase kinase-associat 100.0 5.7E-49 1.9E-53 291.3 13.5 151 6-161 2-159 (159)
4 1fs1_B SKP1, cyclin A/CDK2-ass 100.0 2.8E-46 9.4E-51 271.9 10.7 137 6-148 3-141 (141)
5 1hv2_A Elongin C, ELC1; protei 99.9 2.4E-27 8.1E-32 162.3 1.9 96 1-113 1-99 (99)
6 1vcb_B Protein (elongin C); tu 99.9 6.2E-26 2.1E-30 158.4 2.8 91 4-113 16-112 (112)
7 2fnj_C Transcription elongatio 99.9 8.9E-26 3.1E-30 153.6 1.7 90 5-113 1-96 (96)
8 4ajy_C Transcription elongatio 99.9 2.9E-23 1E-27 141.4 2.0 89 6-113 3-97 (97)
9 2yy9_A Zinc finger and BTB dom 99.0 4.9E-10 1.7E-14 79.6 4.8 97 6-134 27-125 (135)
10 2vkp_A BTB/POZ domain-containi 98.9 9.8E-09 3.4E-13 69.7 8.6 92 6-127 10-108 (109)
11 1buo_A POZ domain, protein (pr 98.8 2.2E-08 7.4E-13 69.5 8.5 90 6-128 30-121 (121)
12 2q81_A MIZ-1 protein; BTB/POZ 98.8 4.2E-08 1.4E-12 67.9 9.2 87 6-125 29-117 (119)
13 3htm_A Speckle-type POZ protei 98.8 5.9E-08 2E-12 70.7 10.1 102 6-138 36-142 (172)
14 3b84_A Zinc finger and BTB dom 98.8 2.2E-08 7.5E-13 69.4 7.3 89 6-126 26-116 (119)
15 2if5_A Zinc finger and BTB dom 98.7 7.3E-08 2.5E-12 66.5 9.3 88 6-124 27-119 (120)
16 1r29_A B-cell lymphoma 6 prote 98.7 1E-07 3.4E-12 66.6 8.4 89 6-125 31-124 (127)
17 2ppi_A Gigaxonin; BTB domain, 98.7 7.1E-08 2.4E-12 69.1 7.7 88 6-124 49-143 (144)
18 2vpk_A Myoneurin; transcriptio 98.6 1.8E-07 6.3E-12 64.2 9.0 88 6-125 24-115 (116)
19 4eoz_A Speckle-type POZ protei 98.6 3.9E-08 1.3E-12 69.7 5.6 99 6-135 27-130 (145)
20 3ga1_A Nucleus accumbens-assoc 98.6 4.7E-08 1.6E-12 68.6 4.7 89 6-126 35-126 (129)
21 2z8h_A Transcription regulator 98.5 1.9E-07 6.6E-12 66.2 5.6 94 6-130 38-135 (138)
22 3hve_A Gigaxonin; ubiquitin, c 98.5 2.2E-07 7.4E-12 72.2 6.0 96 6-132 33-135 (256)
23 3m5b_A Zinc finger and BTB dom 98.4 1.2E-07 4.2E-12 65.8 3.4 84 6-126 32-117 (119)
24 3hqi_A Speckle-type POZ protei 98.4 1.2E-06 4.2E-11 69.7 9.5 102 6-138 176-282 (312)
25 3fkc_A Transcriptional regulat 98.3 1.1E-06 3.9E-11 60.5 6.7 80 6-118 33-115 (116)
26 3i3n_A Kelch-like protein 11; 98.3 5.3E-07 1.8E-11 70.9 5.3 102 6-137 34-148 (279)
27 3ohu_A Transcription regulator 98.3 1.1E-07 3.8E-12 66.1 1.1 86 6-122 34-123 (125)
28 2ihc_A Transcription regulator 98.2 4.2E-07 1.4E-11 63.2 1.2 88 6-124 31-122 (124)
29 3drz_A BTB/POZ domain-containi 88.6 3.8 0.00013 27.0 8.6 93 4-126 5-106 (107)
30 2k9n_A MYB24; R2R3 domain, DNA 65.4 12 0.0004 24.5 4.8 36 122-157 25-67 (107)
31 3tnt_A SARS coronavirus main p 65.2 6 0.00021 31.0 3.7 68 79-152 226-297 (306)
32 3tlo_A 3CL-Pro, 3CLP, 3C-like 61.9 4.3 0.00015 31.8 2.4 101 43-152 191-294 (303)
33 1gv2_A C-MYB, MYB proto-oncoge 61.5 9.3 0.00032 24.8 3.7 36 122-157 28-70 (105)
34 1h8a_C AMV V-MYB, MYB transfor 60.5 14 0.00047 24.9 4.6 36 121-156 50-92 (128)
35 3g5o_A Uncharacterized protein 59.3 18 0.00063 23.8 4.9 49 96-144 47-97 (108)
36 3d23_B 3C-like proteinase; mai 57.7 11 0.00037 29.5 3.9 101 42-152 192-296 (302)
37 2xf7_A GP23.1; viral protein; 53.4 16 0.00054 20.4 3.1 36 124-161 11-47 (51)
38 3osg_A MYB21; transcription-DN 51.9 19 0.00064 24.2 4.1 36 121-156 33-75 (126)
39 4eef_G F-HB80.4, designed hema 51.7 3.7 0.00013 25.6 0.4 22 122-143 47-68 (74)
40 1pd7_B MAD1; PAH2, SIN3, eukar 51.4 3.3 0.00011 20.3 0.1 12 101-112 5-16 (26)
41 1jr5_A 10 kDa anti-sigma facto 51.2 9.4 0.00032 24.6 2.2 33 129-164 45-79 (90)
42 1wgx_A KIAA1903 protein; MYB D 50.6 10 0.00036 23.5 2.3 20 122-141 35-54 (73)
43 3zqc_A MYB3; transcription-DNA 49.2 9 0.00031 26.0 2.1 35 122-156 26-67 (131)
44 2cqq_A RSGI RUH-037, DNAJ homo 49.1 12 0.00041 23.0 2.5 19 122-141 35-53 (72)
45 1ug2_A 2610100B20RIK gene prod 47.2 14 0.00046 24.0 2.5 20 122-141 59-78 (95)
46 3lsg_A Two-component response 46.1 52 0.0018 20.5 8.9 79 49-144 1-82 (103)
47 2jsp_A Transcriptional regulat 45.6 9.5 0.00033 24.5 1.6 18 130-147 43-60 (87)
48 3few_X Colicin S4; cell lysis, 44.7 22 0.00076 29.4 4.0 29 120-148 164-192 (505)
49 3mkl_A HTH-type transcriptiona 43.8 63 0.0022 20.8 9.1 78 47-143 4-84 (120)
50 3htm_A Speckle-type POZ protei 41.1 36 0.0012 23.3 4.4 45 84-129 121-165 (172)
51 3d55_A Antitoxin, uncharacteri 40.4 18 0.00063 22.8 2.4 42 102-143 44-90 (91)
52 1lvo_A Replicase, hydrolase do 39.9 10 0.00034 29.7 1.2 100 42-152 189-293 (302)
53 3i3n_A Kelch-like protein 11; 39.1 57 0.0019 24.5 5.5 57 85-142 129-194 (279)
54 3phx_B Ubiquitin-like protein 38.9 21 0.00072 21.3 2.5 35 1-35 1-35 (79)
55 2qq4_A Iron-sulfur cluster bio 38.4 32 0.0011 23.6 3.6 21 120-140 70-90 (138)
56 1x41_A Transcriptional adaptor 38.1 24 0.00081 20.4 2.5 20 122-141 32-51 (60)
57 1ni7_A ER75, hypothetical prot 37.7 41 0.0014 23.8 4.1 34 116-149 87-128 (155)
58 3lvl_A NIFU-like protein; prot 37.6 31 0.001 23.5 3.3 37 105-141 54-91 (129)
59 1h89_C C-MYB, MYB proto-oncoge 37.0 31 0.0011 24.0 3.4 35 122-156 82-123 (159)
60 2q6f_A Fragment, infectious br 36.6 33 0.0011 26.9 3.6 66 79-151 232-299 (309)
61 1xjs_A NIFU-like protein; SR17 36.5 35 0.0012 23.7 3.6 37 105-141 56-93 (147)
62 2eqr_A N-COR1, N-COR, nuclear 36.5 22 0.00075 20.8 2.2 20 122-141 35-54 (61)
63 2cjj_A Radialis; plant develop 36.5 21 0.00072 23.0 2.2 20 122-141 35-54 (93)
64 4eo3_A Bacterioferritin comigr 35.2 10 0.00035 29.9 0.6 36 101-146 245-280 (322)
65 3g0m_A Cysteine desulfuration 34.2 34 0.0012 23.7 3.2 29 120-148 84-120 (141)
66 1su0_B NIFU like protein ISCU; 33.8 46 0.0016 23.5 3.9 37 105-141 55-92 (159)
67 3hm5_A DNA methyltransferase 1 33.8 45 0.0015 21.5 3.5 19 122-140 53-76 (93)
68 1d5y_A ROB transcription facto 33.7 1.4E+02 0.0049 22.0 8.8 18 50-69 3-20 (292)
69 3hve_A Gigaxonin; ubiquitin, c 33.4 72 0.0025 23.5 5.2 74 88-163 124-207 (256)
70 2yus_A SWI/SNF-related matrix- 33.1 31 0.001 21.4 2.5 39 97-141 22-60 (79)
71 2lr8_A CAsp8-associated protei 39.1 9.2 0.00031 23.5 0.0 21 120-141 38-58 (70)
72 2ki0_A DS119; beta-alpha-beta, 31.3 30 0.001 17.7 1.8 11 147-157 13-23 (36)
73 2eqx_A Kelch repeat and BTB do 30.5 36 0.0012 21.9 2.6 46 96-141 8-62 (105)
74 2cqr_A RSGI RUH-043, DNAJ homo 30.4 16 0.00056 22.4 0.9 21 121-141 44-64 (73)
75 2yum_A ZZZ3 protein, zinc fing 30.2 36 0.0012 20.5 2.5 20 121-140 36-55 (75)
76 2elk_A SPCC24B10.08C protein; 29.7 40 0.0014 19.3 2.5 20 121-140 32-52 (58)
77 2ra2_A Putative lipoprotein; X 29.6 35 0.0012 20.5 2.2 18 1-19 1-18 (64)
78 4b0z_A RPN12, 26S proteasome r 28.5 37 0.0013 25.3 2.8 65 97-164 149-221 (229)
79 2fre_A NAD(P)H-flavin oxidored 27.4 14 0.00048 26.5 0.2 37 100-146 117-153 (200)
80 1bl0_A Protein (multiple antib 27.2 1.3E+02 0.0045 19.5 9.8 21 47-69 8-28 (129)
81 3drx_A BTB/POZ domain-containi 27.1 54 0.0018 24.2 3.3 93 5-127 12-113 (202)
82 2z7e_A ISCU protein, NIFU-like 27.0 40 0.0014 23.8 2.5 22 120-141 69-90 (157)
83 2ftc_M Mitochondrial ribosomal 26.7 43 0.0015 22.1 2.5 21 121-141 13-33 (110)
84 3oio_A Transcriptional regulat 26.6 1.2E+02 0.0043 19.0 10.0 79 48-144 5-86 (113)
85 3few_X Colicin S4; cell lysis, 26.4 47 0.0016 27.5 3.1 40 121-160 252-292 (505)
86 3ge6_A Nitroreductase; structu 26.3 13 0.00044 26.8 -0.2 34 103-146 148-182 (212)
87 3kdf_A Replication protein A 1 26.0 53 0.0018 22.1 2.9 20 3-22 37-56 (121)
88 1vfr_A NAD(P)H\:FMN oxidoreduc 25.7 13 0.00045 26.7 -0.2 36 101-146 147-183 (218)
89 4eb5_C NIFU protein (NIFU-1); 25.1 46 0.0016 23.4 2.6 22 119-140 63-84 (153)
90 1j2j_B ADP-ribosylation factor 24.9 94 0.0032 17.2 3.3 20 120-139 9-28 (45)
91 2kw0_A CCMH protein; oxidoredu 24.7 49 0.0017 21.2 2.4 12 129-140 55-66 (90)
92 1a92_A Delta antigen; leucine 24.5 28 0.00097 19.7 1.1 14 148-161 27-40 (50)
93 3h4o_A Nitroreductase family p 24.5 19 0.00064 25.8 0.4 36 101-146 119-154 (191)
94 1i4j_A 50S ribosomal protein L 24.3 49 0.0017 21.8 2.5 21 121-141 17-37 (110)
95 2hj8_A Interferon-induced 17 k 24.1 46 0.0016 20.4 2.2 36 1-36 1-36 (88)
96 2rb6_A Uncharacterized protein 24.1 68 0.0023 19.0 2.8 17 1-19 1-17 (61)
97 3gag_A Putative NADH dehydroge 24.0 23 0.00079 25.3 0.8 36 101-146 140-175 (206)
98 2hl7_A Cytochrome C-type bioge 23.8 52 0.0018 20.8 2.4 12 129-140 58-69 (84)
99 2pi2_E Replication protein A 1 23.8 60 0.0021 22.5 2.9 19 3-21 58-76 (142)
100 2guz_B Mitochondrial import in 23.8 68 0.0023 19.0 2.8 22 131-152 1-25 (65)
101 2cu7_A KIAA1915 protein; nucle 23.7 56 0.0019 19.5 2.5 20 122-141 32-51 (72)
102 2b67_A COG0778: nitroreductase 23.3 17 0.00057 25.9 -0.1 36 101-146 139-174 (204)
103 1ywq_A Nitroreductase family p 23.2 24 0.00083 24.8 0.8 38 101-146 133-170 (200)
104 1nox_A NADH oxidase; flavoenzy 23.1 19 0.00064 25.6 0.2 36 101-146 140-175 (205)
105 1guu_A C-MYB, MYB proto-oncoge 23.0 43 0.0015 18.5 1.7 19 122-140 27-45 (52)
106 1tc3_C Protein (TC3 transposas 22.9 84 0.0029 15.9 3.0 16 128-143 19-34 (51)
107 3mn2_A Probable ARAC family tr 22.7 1.5E+02 0.005 18.5 9.2 77 50-144 2-83 (108)
108 2c35_A Human RPB4, DNA-directe 22.6 2E+02 0.0068 20.0 7.5 41 116-157 102-143 (152)
109 3r2c_J Protein NUSE, 30S ribos 22.5 1.2E+02 0.0041 18.9 3.9 39 1-46 1-43 (83)
110 3bem_A Putative NAD(P)H nitror 22.4 19 0.00066 26.0 0.1 36 101-146 151-186 (218)
111 3r8s_S 50S ribosomal protein L 22.2 57 0.002 21.5 2.5 21 121-141 17-37 (110)
112 2pjh_A Protein NPL4, nuclear p 22.0 43 0.0015 20.6 1.7 19 1-20 1-19 (80)
113 2guz_A Mitochondrial import in 21.7 1.1E+02 0.0039 17.9 3.6 23 130-152 10-33 (71)
114 3oou_A LIN2118 protein; protei 21.6 1.6E+02 0.0053 18.4 9.3 78 49-144 4-84 (108)
115 1dd4_C 50S ribosomal protein L 21.0 1.1E+02 0.0037 16.4 3.2 23 122-144 4-33 (40)
116 4dyq_A Gene 1 protein; GP1, oc 20.8 92 0.0032 21.0 3.4 26 116-144 17-42 (140)
117 2f2c_A Cyclin homolog, V-cycli 20.8 94 0.0032 23.1 3.8 40 115-154 95-135 (254)
118 2d9a_A B-MYB, MYB-related prot 20.7 61 0.0021 18.4 2.1 20 122-141 32-51 (60)
119 3of4_A Nitroreductase; structu 20.7 12 0.00041 27.2 -1.3 36 101-146 139-175 (209)
120 2isk_A BLUB; oxidoreductase, f 20.3 16 0.00054 26.7 -0.8 37 100-146 151-187 (230)
No 1
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=100.00 E-value=9.5e-56 Score=330.50 Aligned_cols=157 Identities=40% Similarity=0.745 Sum_probs=132.4
Q ss_pred CCCCCeEEEEcCCCCEEEecHHHHHHHHHHHHHHHhcCC-----C--Ccccce-ecHHHHHHHHHHhcccccCCCCCCCC
Q 038532 1 MATTSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAA-----D--GEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNN 72 (164)
Q Consensus 1 m~~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~~~~~~~-----~--~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~ 72 (164)
||+ ++|+|+|+||++|.|++.+|++|++|++|+++.+. + .+|||| |++.+|++|++||+ ||+.++++..
T Consensus 4 m~~-~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~--~h~~~~~~~~ 80 (169)
T 3v7d_A 4 MVT-SNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAE--HHRDSNFPDE 80 (169)
T ss_dssp --C-CEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHH--HTTTCCCCC-
T ss_pred CCC-CeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHH--HcccCCCccc
Confidence 676 89999999999999999999999999999997653 3 789999 99999999999999 9998875432
Q ss_pred CCCCchhhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHH
Q 038532 73 DNNKEEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEK 152 (164)
Q Consensus 73 ~~~~~~~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee~ 152 (164)
+..+.+....+++||++| ++++...||+|+.|||||+|++|+++||++||++|+||||+|||++|||++||||||++
T Consensus 81 ~~~~~~~~~~i~~wD~~F---l~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~ 157 (169)
T 3v7d_A 81 DDDDSRKSAPVDSWDREF---LKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEA 157 (169)
T ss_dssp -------CCCCCHHHHHH---TCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHH
T ss_pred ccccccccccccHHHHHH---HcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHH
Confidence 222223456789999999 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCccC
Q 038532 153 AVMDEHGWALH 163 (164)
Q Consensus 153 ~i~~e~~W~~~ 163 (164)
+||+||+|+|+
T Consensus 158 ~ir~en~W~~~ 168 (169)
T 3v7d_A 158 AIRRENEWAED 168 (169)
T ss_dssp HHHTTC-----
T ss_pred HHHHhcccccc
Confidence 99999999997
No 2
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=100.00 E-value=1.6e-53 Score=316.01 Aligned_cols=157 Identities=46% Similarity=0.802 Sum_probs=88.1
Q ss_pred CCCCCeEEEEcCCCCEEEecHHHHHHHHHHHHHHHhcCCCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCC--Cc
Q 038532 1 MATTSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNN--KE 77 (164)
Q Consensus 1 m~~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~--~~ 77 (164)
|++ ++|+|+|+||+.|.|++.+|++|++|++|+++.+..++|||| |++.+|++|++||+ ||+.++++..... +.
T Consensus 1 ~~~-~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~--~h~~~~~~~~~~~~~~~ 77 (160)
T 2p1m_A 1 MSA-KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCK--RHVEAAASKAEAVEGAA 77 (160)
T ss_dssp --------CCC---------CHHHHTCTTTC------------CCTTSCHHHHHHHHHC---------------------
T ss_pred CCC-CEEEEEcCCCCEEEECHHHHHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHH--HcccCCCcccccccccc
Confidence 454 789999999999999999999999999999987767899999 99999999999999 9998764432211 12
Q ss_pred hhhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHHHH
Q 038532 78 EEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDE 157 (164)
Q Consensus 78 ~~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee~~i~~e 157 (164)
.....+++||++| ++++.+.|++|+.|||||+|++|+++||+++|++|+||||+|||++|||++||||||+++||+|
T Consensus 78 ~~~~~i~~wD~~F---l~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 78 TSDDDLKAWDADF---MKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRE 154 (160)
T ss_dssp --------------------------CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred cccchhhHHHHHH---HcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 3556799999999 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccC
Q 038532 158 HGWALH 163 (164)
Q Consensus 158 ~~W~~~ 163 (164)
|+|+|+
T Consensus 155 n~w~~~ 160 (160)
T 2p1m_A 155 NQWAFE 160 (160)
T ss_dssp HHHHHC
T ss_pred CccccC
Confidence 999985
No 3
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=100.00 E-value=5.7e-49 Score=291.30 Aligned_cols=151 Identities=45% Similarity=0.821 Sum_probs=132.2
Q ss_pred eEEEEcCCCCEEEecHHHHHHHHHHHHHHHhcC-C----CCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCC-CCch
Q 038532 6 TVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDA-A----DGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDN-NKEE 78 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a~~S~~l~~~~~~~~-~----~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~-~~~~ 78 (164)
.|+|+|+||+.|.|++.+|.+|++|++|+++.+ . ..+|||| |++.+|++|++||+ +|+.++++..+. ....
T Consensus 2 ~v~L~ssDg~~f~v~~~vA~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~--~h~~~~~~~~~~~~~~~ 79 (159)
T 2ast_A 2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCT--HHKDDPPPPEDDENKEK 79 (159)
T ss_dssp EEEEECTTSCEEEEEHHHHHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHH--HTTTCCC----------
T ss_pred eEEEEcCCCCEEEeCHHHHHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHH--HcCcCCCCccccccccc
Confidence 489999999999999999999999999999743 2 2689999 99999999999999 999887544321 1123
Q ss_pred hhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHHHHc
Q 038532 79 EEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDEH 158 (164)
Q Consensus 79 ~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee~~i~~e~ 158 (164)
....+++||++| ++++.+.+++|+.||+||+|++|+++||+++|++|+||||+|||++|||++||||||+++||+||
T Consensus 80 ~~~~i~~wD~~F---~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~I~~d~t~eEe~~ir~en 156 (159)
T 2ast_A 80 RTDDIPVWDQEF---LKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKEN 156 (159)
T ss_dssp -CCCCCHHHHHH---TCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTTCCCCSCTTHHHHHHHHT
T ss_pred chhhhhHHHHHH---HcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhC
Confidence 456789999999 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc
Q 038532 159 GWA 161 (164)
Q Consensus 159 ~W~ 161 (164)
+|+
T Consensus 157 ~w~ 159 (159)
T 2ast_A 157 QWC 159 (159)
T ss_dssp TTC
T ss_pred CCC
Confidence 997
No 4
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=100.00 E-value=2.8e-46 Score=271.88 Aligned_cols=137 Identities=45% Similarity=0.811 Sum_probs=110.5
Q ss_pred eEEEEcCCCCEEEecHHHHHHHHHHHHHHHhcCCCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCC-CCchhhhhH
Q 038532 6 TVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDN-NKEEEEEEE 83 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~-~~~~~~~~~ 83 (164)
.|+|+|+||++|.|++.+|++|++|++|+++.| +++|||| |++.+|++|++||+ ||+.++.+..+. ........+
T Consensus 3 ~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~-~~~Ipl~~V~~~iL~kVieyc~--~h~~~~~~~~~~~~~~~~~~~i 79 (141)
T 1fs1_B 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCT--HHKDDPPPPEDDENKEKRTDDI 79 (141)
T ss_dssp EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHH--HHTTCC----------------
T ss_pred eEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcC-CCceecCCcCHHHHHHHHHHHH--HhccCCCccccccccccchhhh
Confidence 499999999999999999999999999999876 7799999 99999999999999 999886543321 112345678
Q ss_pred HHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCH
Q 038532 84 EEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTP 148 (164)
Q Consensus 84 ~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~t~ 148 (164)
++||++| ++++.+.+++|+.|||||+|++|+++||+++|++|+||||+|||++|||++||||
T Consensus 80 ~~wD~~F---~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp 141 (141)
T 1fs1_B 80 PVWDQEF---LKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE 141 (141)
T ss_dssp -HHHHHH---TCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred hHHHHHH---HhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence 9999999 8899999999999999999999999999999999999999999999999999997
No 5
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=99.93 E-value=2.4e-27 Score=162.29 Aligned_cols=96 Identities=29% Similarity=0.468 Sum_probs=80.2
Q ss_pred CCCCCeEEEEcCCCCEEEecHHHHHHHHHHHHHHHhcC--CCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCc
Q 038532 1 MATTSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDA--ADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKE 77 (164)
Q Consensus 1 m~~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~~~~~~--~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~ 77 (164)
|++ ++|+|+|+||++|.|++++|++|++|++|+++.. ..++|||| |++.+|++|++||+ ||+.++.+..
T Consensus 1 m~~-~~v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~--~h~~~~~~~~----- 72 (99)
T 1hv2_A 1 MSQ-DFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLN--YNLKYSGVSE----- 72 (99)
T ss_dssp CCC-SEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHH--HHHHHHHHCS-----
T ss_pred CCC-cEEEEEecCCCEEEECHHHHHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHH--HhcccCCCcc-----
Confidence 776 7999999999999999999999999999999732 23789999 99999999999999 9987643211
Q ss_pred hhhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCC
Q 038532 78 EEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEI 113 (164)
Q Consensus 78 ~~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I 113 (164)
....+++| +++++.||+|+.|||||+|
T Consensus 73 -~~~~i~~w--------~vd~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 73 -DDDEIPEF--------EIPTEMSLELLLAADYLSI 99 (99)
T ss_dssp -SCSSCCCC--------CCCHHHHHHHHHHHHHHCC
T ss_pred -ccccCCCc--------cCCHHHHHHHHHHHHHhCc
Confidence 12234544 5799999999999999997
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=99.91 E-value=6.2e-26 Score=158.39 Aligned_cols=91 Identities=30% Similarity=0.435 Sum_probs=76.4
Q ss_pred CCeEEEEcCCCCEEEecHHHHHHHHHHHHHHHhcCC-----CCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCc
Q 038532 4 TSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAA-----DGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKE 77 (164)
Q Consensus 4 ~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~~~~~~~-----~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~ 77 (164)
+++|+|+|+||++|.|++++|++|++|++|+++.+. ..+|||| |++.+|+||++||+ ||+.++...
T Consensus 16 ~~~v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~--~h~~~~~~~------ 87 (112)
T 1vcb_B 16 AMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT--YKVRYTNSS------ 87 (112)
T ss_dssp -CEEEEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHH--HHHHHSSCS------
T ss_pred CCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHH--HhhhccCCc------
Confidence 578999999999999999999999999999997542 2589999 99999999999999 998764321
Q ss_pred hhhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCC
Q 038532 78 EEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEI 113 (164)
Q Consensus 78 ~~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I 113 (164)
..+++| +++++.||+|+.|||||+|
T Consensus 88 ---~~i~~w--------~vd~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 88 ---TEIPEF--------PIAPEIALELLMAANFLDC 112 (112)
T ss_dssp ---SCCCCC--------CCCHHHHHHHHHHHHHHTC
T ss_pred ---CCCCCc--------ccCHHHHHHHHHHHHHhCc
Confidence 224444 5799999999999999997
No 7
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=99.91 E-value=8.9e-26 Score=153.64 Aligned_cols=90 Identities=30% Similarity=0.437 Sum_probs=75.5
Q ss_pred CeEEEEcCCCCEEEecHHHHHHHHHHHHHHHhcCC-----CCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCch
Q 038532 5 STVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDAA-----DGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEE 78 (164)
Q Consensus 5 ~~i~l~s~DG~~f~v~~~~a~~S~~l~~~~~~~~~-----~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~ 78 (164)
++|+|+|+||++|.|++++|++|++|++|+++.|. .++|||| |++.+|++|++||+ ||+.++.+.
T Consensus 1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~--~h~~~~~~~------- 71 (96)
T 2fnj_C 1 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT--YKVRYTNSS------- 71 (96)
T ss_dssp CEEEEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHH--HHHHHHSCC-------
T ss_pred CeEEEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHH--HccccCCCc-------
Confidence 47999999999999999999999999999997542 2589999 99999999999999 998654321
Q ss_pred hhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCC
Q 038532 79 EEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEI 113 (164)
Q Consensus 79 ~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I 113 (164)
..+++| +++++.||+|+.|||||+|
T Consensus 72 --~~i~~w--------~vd~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 72 --TEIPEF--------PIAPEIALELLMAANFLDC 96 (96)
T ss_dssp --SCCCCC--------CCCTTTHHHHHHHHHHHTC
T ss_pred --ccCCCc--------ccCHHHHHHHHHHHHHhCc
Confidence 223444 5789999999999999997
No 8
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.86 E-value=2.9e-23 Score=141.36 Aligned_cols=89 Identities=30% Similarity=0.448 Sum_probs=74.5
Q ss_pred eEEEEcCCCCEEEecHHHHHHHHHHHHHHHhcC-----CCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchh
Q 038532 6 TVKLRSSDNEVFEVEKQVMIQSGTIRNMIEDDA-----ADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEE 79 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a~~S~~l~~~~~~~~-----~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~ 79 (164)
+|+|+|+||++|.|++.+|.+|++|++|+++.| ...+|||| |++.+|++|++||+ ||+.++..+
T Consensus 3 ~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~--~h~~~~~~~-------- 72 (97)
T 4ajy_C 3 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFT--YKVRYTNSS-------- 72 (97)
T ss_dssp EEEEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHH--HHHHHTTCC--------
T ss_pred EEEEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHH--HhcccCCCc--------
Confidence 699999999999999999999999999999753 25789999 99999999999999 998765321
Q ss_pred hhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCC
Q 038532 80 EEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEI 113 (164)
Q Consensus 80 ~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I 113 (164)
..+++| +++.+.+++|+.||+||+.
T Consensus 73 -~~i~~~--------~i~~~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 73 -TEIPEF--------PIAPEIALELLMAANFLDC 97 (97)
T ss_dssp -SCCCCC--------CCCGGGHHHHHHHHHHHTC
T ss_pred -CCCCcC--------cCCHHHHHHHHHHHhhhCC
Confidence 224443 4789999999999999983
No 9
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=98.97 E-value=4.9e-10 Score=79.61 Aligned_cols=97 Identities=14% Similarity=0.178 Sum_probs=71.9
Q ss_pred eEEEEcCCCCEEEecHHH-HHHHHHHHHHHHhcCCCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhhhhH
Q 038532 6 TVKLRSSDNEVFEVEKQV-MIQSGTIRNMIEDDAADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEEEE 83 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~-a~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~~~ 83 (164)
.++|+. +|+.|.+.+.+ +..|.+++.|+... ....|.++ ++..+++.+++|++ ...
T Consensus 27 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~-~~~~i~l~~~~~~~f~~lL~fiY--tg~------------------ 84 (135)
T 2yy9_A 27 DATLDV-GGLVFKAHWSVLACCSHFFQRIYGDG-TGGSVVLPAGFAEIFGLLLDFFY--TGH------------------ 84 (135)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHTCC-----CCEEECGGGHHHHHHHHHHHH--HSC------------------
T ss_pred ceEEEE-CCEEEehHHHHHHHhCHHHHHHHcCC-CCCeEEeCCCCHHHHHHHHHHHh--CCC------------------
Confidence 466665 68999999998 56899999998764 25779999 99999999999999 411
Q ss_pred HHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHH
Q 038532 84 EEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPE 134 (164)
Q Consensus 84 ~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~e 134 (164)
+.++.+.+.+|+.||++|+|+.|.+.|++++...+.|+++.
T Consensus 85 ----------~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~~ 125 (135)
T 2yy9_A 85 ----------LALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQS 125 (135)
T ss_dssp ----------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC---------
T ss_pred ----------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCCC
Confidence 23445668999999999999999999999999999888653
No 10
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=98.88 E-value=9.8e-09 Score=69.70 Aligned_cols=92 Identities=16% Similarity=0.233 Sum_probs=74.6
Q ss_pred eEEEEcCCC---CEEEecHHHH-HHHHHHHHHHHhcC--CCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCch
Q 038532 6 TVKLRSSDN---EVFEVEKQVM-IQSGTIRNMIEDDA--ADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEE 78 (164)
Q Consensus 6 ~i~l~s~DG---~~f~v~~~~a-~~S~~l~~~~~~~~--~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~ 78 (164)
.++|+..+| +.|.+.+.++ ..|++++.|+...- ....|.++ ++..+++.+++|++ . +.
T Consensus 10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iY--t---~~---------- 74 (109)
T 2vkp_A 10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMY--S---DE---------- 74 (109)
T ss_dssp CEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHH--H---CC----------
T ss_pred cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHc--C---CC----------
Confidence 588888886 9999999995 58999999998531 12789999 99999999999999 3 11
Q ss_pred hhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHH
Q 038532 79 EEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADI 127 (164)
Q Consensus 79 ~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~ 127 (164)
+.++.+.+.+|+.||++++++.|.+.|..++...
T Consensus 75 ---------------~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 75 ---------------IDLEADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp ---------------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------ccCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 2234466789999999999999999999998764
No 11
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=98.81 E-value=2.2e-08 Score=69.55 Aligned_cols=90 Identities=19% Similarity=0.282 Sum_probs=74.7
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhcCCCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhhhhH
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDDAADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEEEE 83 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~~~ 83 (164)
.++|+. +|+.|.+.+.++ ..|++++.|+.. ....|.++ ++..+++.+++|++ . +.
T Consensus 30 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~--~~~~i~l~~~~~~~f~~ll~~~Y--t---g~--------------- 86 (121)
T 1buo_A 30 DVVIMV-DSQEFHAHRTVLACTSKMFEILFHR--NSQHYTLDFLSPKTFQQILEYAY--T---AT--------------- 86 (121)
T ss_dssp CEEEEE-SSCEEEECHHHHHHHCHHHHHHTTS--CCSEEEECSSCHHHHHHHHHHHH--H---SC---------------
T ss_pred CEEEEE-CCEEEehhHHHHhhcCHHHHHHHcC--CCcEEEeCCCCHHHHHHHHHhhc--C---CC---------------
Confidence 466665 689999999994 689999999975 35789999 99999999999999 3 11
Q ss_pred HHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHh
Q 038532 84 EEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIV 128 (164)
Q Consensus 84 ~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i 128 (164)
+.++.+.+.+|+.||++|++++|.+.|+..+...|
T Consensus 87 ----------~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 87 ----------LQAKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp ----------CCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ----------cCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 22345568999999999999999999999987654
No 12
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=98.78 E-value=4.2e-08 Score=67.93 Aligned_cols=87 Identities=15% Similarity=0.246 Sum_probs=72.1
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhcCCCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhhhhH
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDDAADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEEEE 83 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~~~ 83 (164)
.++|+. +|+.|.+.+.++ ..|++++.|+... ...|.++ ++..+++.+++|++ . +.
T Consensus 29 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Y--t---g~--------------- 85 (119)
T 2q81_A 29 DCTFVV-DGVHFKAHKAVLAACSEYFKMLFVDQ--KDVVHLDISNAAGLGQVLEFMY--T---AK--------------- 85 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHC--CSGGGGGGCCHHHHHHHHHHHH--H---SC---------------
T ss_pred ceEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHHHc--C---CC---------------
Confidence 466665 689999999995 5899999999873 5779999 99999999999999 3 11
Q ss_pred HHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHH
Q 038532 84 EEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAA 125 (164)
Q Consensus 84 ~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia 125 (164)
+.++.+.+.+|+.||++|+++.|.+.|+.+++
T Consensus 86 ----------~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 86 ----------LSLSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp ----------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ----------CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 22344568999999999999999999998874
No 13
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=98.77 E-value=5.9e-08 Score=70.75 Aligned_cols=102 Identities=13% Similarity=0.160 Sum_probs=81.6
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhc---CCCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhh
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDD---AADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEE 80 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~---~~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~ 80 (164)
.++|+. +|+.|.+.+.++ ..|++++.|+... +....|.++ ++..+++.+++|++ ...
T Consensus 36 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Y--t~~--------------- 97 (172)
T 3htm_A 36 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIY--TGK--------------- 97 (172)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHH--HSC---------------
T ss_pred ceEEEE-CCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHh--CCC---------------
Confidence 466665 689999999995 6899999999863 134789999 99999999999999 411
Q ss_pred hhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHh
Q 038532 81 EEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRR 138 (164)
Q Consensus 81 ~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~ 138 (164)
+.++.+.+.+|+.+|++++++.|.+.|..++...+...++-++..
T Consensus 98 -------------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~~ 142 (172)
T 3htm_A 98 -------------APNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI 142 (172)
T ss_dssp -------------CTTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHHH
T ss_pred -------------CCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 122345578999999999999999999999998887777666543
No 14
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=98.76 E-value=2.2e-08 Score=69.38 Aligned_cols=89 Identities=15% Similarity=0.191 Sum_probs=71.8
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhcCCCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhhhhH
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDDAADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEEEE 83 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~~~ 83 (164)
.++|+. +|+.|.+.+.++ ..|++++.|+... ....|.++ ++..+++.+++|++ . +.
T Consensus 26 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~-~~~~i~l~~~~~~~f~~ll~~iY--t---g~--------------- 83 (119)
T 3b84_A 26 DATLDV-GGLVFKAHWSVLACCSHFFQSLYGDG-SGGSVVLPAGFAEIFGLLLDFFY--T---GH--------------- 83 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTT-TCCCEEECGGGHHHHHHHHHHHH--H---SC---------------
T ss_pred ceEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCC-CCCeEEeCCCCHHHHHHHHHHHc--C---CC---------------
Confidence 466665 689999999994 6899999999864 36789999 99999999999999 3 11
Q ss_pred HHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHH
Q 038532 84 EEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAAD 126 (164)
Q Consensus 84 ~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~ 126 (164)
+.++.+.+.+|+.||++|+++.|.+.|+.++..
T Consensus 84 ----------~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~ 116 (119)
T 3b84_A 84 ----------LALTSGNRDQVLLAARELRVPEAVELCQSFKPK 116 (119)
T ss_dssp ----------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC--
T ss_pred ----------CccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 223445678999999999999999999987643
No 15
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=98.74 E-value=7.3e-08 Score=66.53 Aligned_cols=88 Identities=17% Similarity=0.262 Sum_probs=71.3
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhc---CCCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhh
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDD---AADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEE 80 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~---~~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~ 80 (164)
.++|+. +|+.|.+.+.++ ..|++++.|+... +....|.++ ++..+++.+++|++ .- .
T Consensus 27 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Y--t~---~------------ 88 (120)
T 2if5_A 27 DVVILV-EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAY--TA---T------------ 88 (120)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHH--HS---C------------
T ss_pred CeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHc--CC---C------------
Confidence 466665 689999999995 5899999999854 234679999 99999999999999 31 1
Q ss_pred hhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHH
Q 038532 81 EEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLA 124 (164)
Q Consensus 81 ~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~i 124 (164)
+.++.+.+.+|+.||+++++++|.+.|.+++
T Consensus 89 -------------~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 89 -------------LTVSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp -------------CCCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------------CccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 2234566899999999999999999998865
No 16
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=98.67 E-value=1e-07 Score=66.55 Aligned_cols=89 Identities=16% Similarity=0.263 Sum_probs=72.8
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhcC--CCCcccc-e-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhh
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDDA--ADGEIPV-Q-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEE 80 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~~--~~~~I~l-~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~ 80 (164)
.++|+. +|+.|.+.+.++ ..|++++.|+.... ....|.+ + ++..+++.+++|++ . +.
T Consensus 31 Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Y--t---g~------------ 92 (127)
T 1r29_A 31 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMY--T---SR------------ 92 (127)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHH--H---SC------------
T ss_pred CEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHc--C---CC------------
Confidence 466665 589999999995 68999999998642 2467899 7 99999999999999 3 11
Q ss_pred hhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHH
Q 038532 81 EEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAA 125 (164)
Q Consensus 81 ~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia 125 (164)
+.++.+.+.+|+.||++|+++.|.+.|..++.
T Consensus 93 -------------~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~ 124 (127)
T 1r29_A 93 -------------LNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 124 (127)
T ss_dssp -------------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------cCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 22345668999999999999999999998875
No 17
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=98.67 E-value=7.1e-08 Score=69.13 Aligned_cols=88 Identities=20% Similarity=0.293 Sum_probs=71.5
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhcC-----CCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCch
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDDA-----ADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEE 78 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~~-----~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~ 78 (164)
.++|+. +|+.|.+.+.++ ..|++++.|+.... ....|.++ ++..+++.+++|++ . +.
T Consensus 49 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiY--t---g~---------- 112 (144)
T 2ppi_A 49 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIF--S---GQ---------- 112 (144)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHT--T---SC----------
T ss_pred ceEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHh--C---CC----------
Confidence 466665 689999999995 58999999998632 34679999 99999999999999 3 11
Q ss_pred hhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHH
Q 038532 79 EEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLA 124 (164)
Q Consensus 79 ~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~i 124 (164)
+.++.+.+.+|+.||++|++++|.+.|++++
T Consensus 113 ---------------~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 113 ---------------IRLNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp ---------------CCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred ---------------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 2234556899999999999999999998754
No 18
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=98.64 E-value=1.8e-07 Score=64.16 Aligned_cols=88 Identities=11% Similarity=0.167 Sum_probs=70.1
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhcCCCCc--ccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhhh
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDDAADGE--IPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEE 81 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~~~~~~--I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (164)
.++|+. +|+.|.+.+.++ ..|++++.|+... .... |+++ ++..+++.+++|++ . +.
T Consensus 24 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~-~~~~i~l~~~~~~~~~f~~ll~~~Y--t---~~------------- 83 (116)
T 2vpk_A 24 DCTIVI-GEFQFKAHRNVLASFSEYFGAIYRST-SENNVFLDQSQVKADGFQKLLEFIY--T---GT------------- 83 (116)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTC-CCSCEECCTTTCCHHHHHHHHHHHH--H---SC-------------
T ss_pred cEEEEE-CCEEEeccHHHHhhcCHHHHHHHcCC-CCCeEEeecCCCCHHHHHHHHHHHc--C---CC-------------
Confidence 466665 589999999995 6899999999865 2344 4555 99999999999999 3 11
Q ss_pred hHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHH
Q 038532 82 EEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAA 125 (164)
Q Consensus 82 ~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia 125 (164)
+.++.+.+.+|+.||++|+++.|.+.|+.++.
T Consensus 84 ------------~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 84 ------------LNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp ------------CCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred ------------cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 22345568999999999999999999998763
No 19
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=98.64 E-value=3.9e-08 Score=69.75 Aligned_cols=99 Identities=12% Similarity=0.160 Sum_probs=70.9
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhcC---CCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhh
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDDA---ADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEE 80 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~~---~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~ 80 (164)
.++|+. +|+.|.+.+.++ ..|++++.|+...- ....|.++ ++..+++.+++|++ ...
T Consensus 27 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y--~~~--------------- 88 (145)
T 4eoz_A 27 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIY--TGK--------------- 88 (145)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHH--HSC---------------
T ss_pred ceEEEE-CCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhc--cCc---------------
Confidence 466765 689999999995 68999999998531 23679999 99999999999999 411
Q ss_pred hhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHH
Q 038532 81 EEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEE 135 (164)
Q Consensus 81 ~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~ee 135 (164)
+.++.+.+.+|+.+|++++++.|.+.|+..+...+...+.-+
T Consensus 89 -------------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~ 130 (145)
T 4eoz_A 89 -------------APNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAE 130 (145)
T ss_dssp -------------CTTGGGTHHHHHHHHHHTTCHHHHHHHHCC------------
T ss_pred -------------cCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHHHH
Confidence 122345678999999999999999999999887665544433
No 20
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=98.59 E-value=4.7e-08 Score=68.57 Aligned_cols=89 Identities=15% Similarity=0.351 Sum_probs=68.4
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhcCCCCcccce--ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhhhh
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDDAADGEIPVQ--ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEEE 82 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~~~~~~I~l~--v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~~ 82 (164)
.++|+. +|+.|.+.+.++ ..|++++.|+... ....|.++ ++..+++.+++|++ .-.
T Consensus 35 Dv~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~-~~~~i~l~~~~~~~~f~~ll~~iY--tg~----------------- 93 (129)
T 3ga1_A 35 DVSVVV-KGHAFKAHRAVLAASSSYFRDLFNNS-RSAVVELPAAVQPQSFQQILSFCY--TGR----------------- 93 (129)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHHHC-CCSEEECCTTCCHHHHHHHHHHHH--HSE-----------------
T ss_pred ceEEEE-CCEEEEehHHHHHHcCHHHHHHHcCC-CCCEEEECCCCCHHHHHHHHHHHh--CCc-----------------
Confidence 466665 799999999995 5899999999975 45778884 99999999999999 310
Q ss_pred HHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHH
Q 038532 83 EEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAAD 126 (164)
Q Consensus 83 ~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~ 126 (164)
+.++.+.+.+|+.||++|+++.|.+.|+.++..
T Consensus 94 -----------~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~ 126 (129)
T 3ga1_A 94 -----------LSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLK 126 (129)
T ss_dssp -----------EECCTTTHHHHHHHHHHTTBTTSSCC-------
T ss_pred -----------cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 234556689999999999999999999988754
No 21
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=98.48 E-value=1.9e-07 Score=66.17 Aligned_cols=94 Identities=11% Similarity=0.172 Sum_probs=74.4
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhcC-CCCcccce--ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhhh
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDDA-ADGEIPVQ--ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEE 81 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~~-~~~~I~l~--v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (164)
.++|+. +|+.|.+.+.++ ..|++++.|+.... ....|.++ |+...++.+++|++ . +.
T Consensus 38 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Y--t---g~------------- 98 (138)
T 2z8h_A 38 DVTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAY--T---AK------------- 98 (138)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHH--H---SC-------------
T ss_pred CeEEEE-CCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhc--C---CC-------------
Confidence 466665 589999999995 68999999998643 23567784 99999999999999 3 11
Q ss_pred hHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcC
Q 038532 82 EEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKG 130 (164)
Q Consensus 82 ~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~g 130 (164)
+.++.+.+.+|+.||++|+++.|.+.|++++...+..
T Consensus 99 ------------~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~ 135 (138)
T 2z8h_A 99 ------------LILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD 135 (138)
T ss_dssp ------------CCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred ------------cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 2344556899999999999999999999988765543
No 22
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=98.46 E-value=2.2e-07 Score=72.24 Aligned_cols=96 Identities=19% Similarity=0.284 Sum_probs=64.4
Q ss_pred eEEEEcCCCCEEEecHHHHH-HHHHHHHHHHhcC-----CCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCch
Q 038532 6 TVKLRSSDNEVFEVEKQVMI-QSGTIRNMIEDDA-----ADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEE 78 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a~-~S~~l~~~~~~~~-----~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~ 78 (164)
.++|+. +|+.|.+.+.++. .|++++.|+.... ....|+++ ++..+++.+++|++ .-.
T Consensus 33 Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Y--t~~------------- 96 (256)
T 3hve_A 33 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIF--SGQ------------- 96 (256)
T ss_dssp CEEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHH--HSC-------------
T ss_pred ceEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhcc--CCC-------------
Confidence 466665 6899999999964 7999999987531 34679999 99999999999999 411
Q ss_pred hhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCC
Q 038532 79 EEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKT 132 (164)
Q Consensus 79 ~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks 132 (164)
+.++.+.+.+|+.||++|+++.|.+.|+.++...+.-.+
T Consensus 97 ---------------~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n 135 (256)
T 3hve_A 97 ---------------IRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAEN 135 (256)
T ss_dssp ---------------CCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSST
T ss_pred ---------------CcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhh
Confidence 112333456666666666666666666666655544433
No 23
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=98.43 E-value=1.2e-07 Score=65.85 Aligned_cols=84 Identities=15% Similarity=0.105 Sum_probs=67.6
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhcCCCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhhhhH
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDDAADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEEEE 83 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~~~ 83 (164)
.++|+. +|+.|.+.+.++ ..|.+++. ....|.++ |+..+++.+++|++ . +.
T Consensus 32 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~------~~~~i~l~~v~~~~f~~ll~fiY--t---g~--------------- 84 (119)
T 3m5b_A 32 DTLITV-GSQEFPAHSLVLAGVSQQLGR------RGQWALGEGISPSTFAQLLNFVY--G---ES--------------- 84 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHTTCGGGCC------CEEEECCSSCCHHHHHHHHHHHT--T---CC---------------
T ss_pred ceEEEE-CCEEEeeEHHHHHHcCHHHhc------CCCEEEeCCCCHHHHHHHHHHHc--C---CC---------------
Confidence 366665 699999999995 57888874 24678999 99999999999999 3 10
Q ss_pred HHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHH
Q 038532 84 EEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAAD 126 (164)
Q Consensus 84 ~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~ 126 (164)
+.++.+.+.+|+.||++|+++.|.+.|++++.+
T Consensus 85 ----------~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 85 ----------VELQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp ----------EEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred ----------cCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 345667789999999999999999999998754
No 24
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=98.41 E-value=1.2e-06 Score=69.74 Aligned_cols=102 Identities=13% Similarity=0.155 Sum_probs=80.4
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhc---CCCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhh
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDD---AADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEE 80 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~---~~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~ 80 (164)
.++|+. +|+.|.+.+.++ ..|++++.|+... +....|.++ ++..+++.+++|++ . +.
T Consensus 176 Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY--t---~~------------ 237 (312)
T 3hqi_A 176 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIY--T---GK------------ 237 (312)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHH--H---SC------------
T ss_pred ceEEEE-CCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhc--C---CC------------
Confidence 466666 789999999994 6899999998753 234789999 99999999999999 3 11
Q ss_pred hhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHh
Q 038532 81 EEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRR 138 (164)
Q Consensus 81 ~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~ 138 (164)
+.+..+.+.+|+.||++++++.|...|...+...+...++-++..
T Consensus 238 -------------~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~ 282 (312)
T 3hqi_A 238 -------------APNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI 282 (312)
T ss_dssp -------------CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHH
T ss_pred -------------CCChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 112335688999999999999999999999987777777655543
No 25
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=98.34 E-value=1.1e-06 Score=60.46 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=66.4
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhcCCCCcccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhhhhH
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDDAADGEIPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEEEE 83 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~~~~~~I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~~~ 83 (164)
.++|+. +|+.|.+.+.++ ..|++++.++... ...|.++ ++..+++.+++|++ . +.
T Consensus 33 Dv~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~--~~~i~l~~~~~~~f~~~l~~~Y--t---g~--------------- 89 (116)
T 3fkc_A 33 DVTVIV-EDRKFRAHKNILSASSTYFHQLFSVA--GQVVELSFIRAEIFAEILNYIY--S---SK--------------- 89 (116)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHT--T---SC---------------
T ss_pred eEEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHhhc--C---CC---------------
Confidence 466665 689999999995 6899999999763 5789999 99999999999999 3 11
Q ss_pred HHHHHHhhhhh-cCcHHHHHHHHHhhhcCCChhHHH
Q 038532 84 EEWEKKFDEEV-SEDKDLHFGLLLAANYLEIPALLD 118 (164)
Q Consensus 84 ~~wd~~F~~~l-~~~~~~l~~Ll~AA~~L~I~~L~~ 118 (164)
+ .++.+.+.+|+.||++|+|++|.+
T Consensus 90 ----------~~~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 90 ----------IVRVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp ----------CCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred ----------cCCCCHHHHHHHHHHHHHhCccccCc
Confidence 2 356677899999999999999975
No 26
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=98.33 E-value=5.3e-07 Score=70.92 Aligned_cols=102 Identities=10% Similarity=0.148 Sum_probs=75.1
Q ss_pred eEEEEcC--CCCEEEecHHHH-HHHHHHHHHHHhc---CCCCcccc-------eecHHHHHHHHHHhcccccCCCCCCCC
Q 038532 6 TVKLRSS--DNEVFEVEKQVM-IQSGTIRNMIEDD---AADGEIPV-------QISSRNLAKIVEWCKCMQHRDRNNNNN 72 (164)
Q Consensus 6 ~i~l~s~--DG~~f~v~~~~a-~~S~~l~~~~~~~---~~~~~I~l-------~v~s~~L~~Ii~~~~~~~h~~~~~~~~ 72 (164)
.++|+.. ||+.|.+.+.++ ..|++++.|+.+. +....|.+ .++..+++.+++|++ .-.
T Consensus 34 Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Y--tg~------- 104 (279)
T 3i3n_A 34 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMY--TGR------- 104 (279)
T ss_dssp CEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHH--HSE-------
T ss_pred CeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhC--cCC-------
Confidence 4777766 799999999995 5899999998753 12356666 378999999999999 311
Q ss_pred CCCCchhhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHH
Q 038532 73 DNNKEEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIR 137 (164)
Q Consensus 73 ~~~~~~~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir 137 (164)
+.++.+.+.+|+.||++|+++.|.+.|+.++...+...+.-.+.
T Consensus 105 ---------------------~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i~ 148 (279)
T 3i3n_A 105 ---------------------IRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIH 148 (279)
T ss_dssp ---------------------EEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHHH
T ss_pred ---------------------cccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHHH
Confidence 23345568899999999999999999999888877776655553
No 27
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=98.32 E-value=1.1e-07 Score=66.11 Aligned_cols=86 Identities=13% Similarity=0.233 Sum_probs=69.1
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhcC-CCCcccce--ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhhh
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDDA-ADGEIPVQ--ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEE 81 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~~-~~~~I~l~--v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (164)
.++|+. +|+.|.+.+.++ ..|++++.|+.... ....|.++ ++..+++.+++|++ . +.
T Consensus 34 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iY--t---g~------------- 94 (125)
T 3ohu_A 34 DVTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAY--T---AK------------- 94 (125)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHT--T---SE-------------
T ss_pred ceEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHc--C---Cc-------------
Confidence 466665 689999999994 58999999998643 24567776 89999999999999 3 10
Q ss_pred hHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHH
Q 038532 82 EEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQ 122 (164)
Q Consensus 82 ~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~ 122 (164)
+.++.+.+.+|+.||++|+++.|.+.|++
T Consensus 95 ------------~~~~~~~v~~ll~~A~~l~i~~L~~~C~~ 123 (125)
T 3ohu_A 95 ------------LLLSRENIREVIRCAEFLRMHNLEDSCFS 123 (125)
T ss_dssp ------------EEECTTTHHHHHHHHHHHTBSSCTTSSCC
T ss_pred ------------eEECHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 23455678999999999999999998865
No 28
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=98.16 E-value=4.2e-07 Score=63.24 Aligned_cols=88 Identities=11% Similarity=0.230 Sum_probs=69.3
Q ss_pred eEEEEcCCCCEEEecHHHH-HHHHHHHHHHHhcC-CCCcccc-e-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhhh
Q 038532 6 TVKLRSSDNEVFEVEKQVM-IQSGTIRNMIEDDA-ADGEIPV-Q-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEE 81 (164)
Q Consensus 6 ~i~l~s~DG~~f~v~~~~a-~~S~~l~~~~~~~~-~~~~I~l-~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~ 81 (164)
.++|+. +|+.|.+.+.++ ..|++++.|+.... ....|.+ . |+...++.+++|++ .-.
T Consensus 31 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iY--tg~---------------- 91 (124)
T 2ihc_A 31 DVTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAY--TAK---------------- 91 (124)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHH--HSE----------------
T ss_pred CEEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhc--CCC----------------
Confidence 466665 589999999995 68999999998642 2356777 4 99999999999999 310
Q ss_pred hHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHH
Q 038532 82 EEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLA 124 (164)
Q Consensus 82 ~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~i 124 (164)
+.++.+.+.+|+.||++|+++.|.+.|++++
T Consensus 92 ------------~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l 122 (124)
T 2ihc_A 92 ------------LILSKENVDEVCKCVEFLSVHNIEESCFQFL 122 (124)
T ss_dssp ------------EEEETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred ------------cccCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 2345566899999999999999999998754
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=88.62 E-value=3.8 Score=27.03 Aligned_cols=93 Identities=13% Similarity=0.242 Sum_probs=62.0
Q ss_pred CCeEEEEcCCCCEEEecHHHHHHH--HHHHHHHHhc---C----CCCcccceecHHHHHHHHHHhcccccCCCCCCCCCC
Q 038532 4 TSTVKLRSSDNEVFEVEKQVMIQS--GTIRNMIEDD---A----ADGEIPVQISSRNLAKIVEWCKCMQHRDRNNNNNDN 74 (164)
Q Consensus 4 ~~~i~l~s~DG~~f~v~~~~a~~S--~~l~~~~~~~---~----~~~~I~l~v~s~~L~~Ii~~~~~~~h~~~~~~~~~~ 74 (164)
++.|+|.- .|+.|.++...+..- .++..|+... + ..+.+-+.-++..++.|+.|+. .-. -..+
T Consensus 5 ~~~v~LNV-GG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fiDRdp~~F~~IL~~lr--~g~-l~~p---- 76 (107)
T 3drz_A 5 SKWVRLNV-GGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLR--HGK-LVIN---- 76 (107)
T ss_dssp CCEEEEEE-TTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEECSCHHHHHHHHHHHH--HSC-CCCC----
T ss_pred CCEEEEEE-CCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEecCChHHHHHHHHHhC--CCe-eCCC----
Confidence 45566654 499999999887542 3567776532 1 2244545589999999999999 421 1111
Q ss_pred CCchhhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHH
Q 038532 75 NKEEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAAD 126 (164)
Q Consensus 75 ~~~~~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~ 126 (164)
. ++. ...++..|.|.+|++|+++|-..|..
T Consensus 77 ------~-------------~~~---~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 77 ------K-------------DLA---EEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp ------T-------------TSC---HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------C-------------CCC---HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 0 111 24577899999999999999877653
No 30
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=65.44 E-value=12 Score=24.51 Aligned_cols=36 Identities=17% Similarity=0.451 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCHHHHHhHcC------CC-CCCCHHHHHHHHHH
Q 038532 122 QLAADIVKGKTPEEIRRTFN------IK-KDFTPEEEKAVMDE 157 (164)
Q Consensus 122 ~~ia~~i~gks~eeir~~f~------i~-~d~t~eee~~i~~e 157 (164)
..||..+.|+|+.+.|+.+. |. ..+|+||.+.+.+-
T Consensus 25 ~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~ 67 (107)
T 2k9n_A 25 IRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQK 67 (107)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHH
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHH
Confidence 56888889999999998742 33 35999998877653
No 31
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=65.22 E-value=6 Score=30.99 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=51.4
Q ss_pred hhhhHHHHHHH--hhhhhcCcHH--HHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHH
Q 038532 79 EEEEEEEWEKK--FDEEVSEDKD--LHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEK 152 (164)
Q Consensus 79 ~~~~~~~wd~~--F~~~l~~~~~--~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee~ 152 (164)
.-+.+.+|-.. | -....+ ..++.|.|..=-.+..|+...-+.+.+-+.|++ |--...++++|||+|--
T Consensus 226 sv~dfN~WA~~ngf---t~~~~~~~~~~~~Laa~TGVsVe~lL~aI~~ll~~g~~G~~---IlG~~~leDE~Tp~~V~ 297 (306)
T 3tnt_A 226 TLNDFNLVAMKYNY---EPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRT---ILGSTILEDEFTPFDVV 297 (306)
T ss_dssp CHHHHHHHHHHTTB---CCCCHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHHCCTTCC---BTTBSSCCCSCCHHHHH
T ss_pred cHHHHHHHHHhcCC---ccccccHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCcCCce---eeccccccccCCHHHHH
Confidence 45677888544 4 234443 468999999999999999988877777778887 66677889999998643
No 32
>3tlo_A 3CL-Pro, 3CLP, 3C-like proteinase; hydrolysis, hydrolase, protein binding; 1.60A {Human coronavirus} PDB: 2zu2_A 1p9s_A
Probab=61.88 E-value=4.3 Score=31.75 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=60.2
Q ss_pred ccce-ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhhhhHHHHHH--HhhhhhcCcHHHHHHHHHhhhcCCChhHHHH
Q 038532 43 IPVQ-ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEEEEEEWEK--KFDEEVSEDKDLHFGLLLAANYLEIPALLDR 119 (164)
Q Consensus 43 I~l~-v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~~~~~wd~--~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l 119 (164)
..++ -+.-+=..|+.|++ -+--+..+---.......+.+.+|-. .| -.+.....+++|.|..=-++..|+..
T Consensus 191 ~Q~~~~d~~~T~NVvAwLY--AAilng~~wfl~~~~~sv~dfN~WA~~ngf---t~~~~~~~~~~Laa~TGVsV~~lL~a 265 (303)
T 3tlo_A 191 LQVESANLMLSDNVVAFLY--AALLNGCRWWLCSTRVNVDGFNEWAMANGY---TSVSSVECYSILAAKTGVSVEQLLAS 265 (303)
T ss_dssp CCCCCCCCBCHHHHHHHHH--HHHHTTCCTTCCCCCCCHHHHHHHHHHHTB---CCCCCSGGGHHHHHHHTCCHHHHHHH
T ss_pred hcccCccceeehhHHHHHH--HHHHcCCCeeeccceecHHHHHHHHHhcCc---cccccchHHHHHHHHhCCcHHHHHHH
Confidence 3444 33333456788887 44322110000011234567888843 35 34555678899999999999999876
Q ss_pred HHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHH
Q 038532 120 LCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEK 152 (164)
Q Consensus 120 ~~~~ia~~i~gks~eeir~~f~i~~d~t~eee~ 152 (164)
.-+ ++.-+.|+ .|--...++++|||+|--
T Consensus 266 I~~-L~~g~~G~---~IlG~~~leDE~Tp~~V~ 294 (303)
T 3tlo_A 266 IQH-LHEGFGGK---NILGYSSLCDEFTLAEVV 294 (303)
T ss_dssp HHH-HTTCCTTC---CBTTBSSCCCCCCHHHHH
T ss_pred HHH-HhcCCCCc---eecccccccccCCHHHHH
Confidence 654 54444455 355567788899998653
No 33
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=61.48 E-value=9.3 Score=24.76 Aligned_cols=36 Identities=22% Similarity=0.497 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCHHHHHhHcC------CC-CCCCHHHHHHHHHH
Q 038532 122 QLAADIVKGKTPEEIRRTFN------IK-KDFTPEEEKAVMDE 157 (164)
Q Consensus 122 ~~ia~~i~gks~eeir~~f~------i~-~d~t~eee~~i~~e 157 (164)
..||..+.|+|+.+.|..+. +. ..+|+||.+.+.+-
T Consensus 28 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~ 70 (105)
T 1gv2_A 28 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 70 (105)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHH
T ss_pred HHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHH
Confidence 56788888999999998753 33 35999998877653
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=60.48 E-value=14 Score=24.92 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCHHHHHhHcC------CC-CCCCHHHHHHHHH
Q 038532 121 CQLAADIVKGKTPEEIRRTFN------IK-KDFTPEEEKAVMD 156 (164)
Q Consensus 121 ~~~ia~~i~gks~eeir~~f~------i~-~d~t~eee~~i~~ 156 (164)
=..||..+.|+|..++|..+. +. ..+|+||.+.+.+
T Consensus 50 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 92 (128)
T 1h8a_C 50 WSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 92 (128)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHH
Confidence 357888899999999998753 33 3599998887765
No 35
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=59.30 E-value=18 Score=23.80 Aligned_cols=49 Identities=24% Similarity=0.408 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCC--CHHHHHhHcCCCC
Q 038532 96 EDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGK--TPEEIRRTFNIKK 144 (164)
Q Consensus 96 ~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gk--s~eeir~~f~i~~ 144 (164)
++.+..-.|....+.|..+.+.......+++.-.|+ |.+|+++.+|+..
T Consensus 47 ~s~e~ye~l~etl~LL~~~~~~~~L~~a~~~~~~G~~~s~eev~~~lgl~~ 97 (108)
T 3g5o_A 47 VGADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGEDEIRAEFGVPR 97 (108)
T ss_dssp EEHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHTCEECHHHHHHHHTCCC
T ss_pred ecHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCc
Confidence 455555666677777888899999988888888886 8999999999975
No 36
>3d23_B 3C-like proteinase; main protease, ATP-binding, endonuclease, exonuclease, helic hydrolase, membrane, metal-binding, nuclease; HET: 3IH; 2.50A {Human coronavirus}
Probab=57.72 E-value=11 Score=29.48 Aligned_cols=101 Identities=15% Similarity=0.192 Sum_probs=61.4
Q ss_pred cccce-ecHHHHHHHHHHhcccccCCC-CCCCCCCCCchhhhhHHHHHH--HhhhhhcCcHHHHHHHHHhhhcCCChhHH
Q 038532 42 EIPVQ-ISSRNLAKIVEWCKCMQHRDR-NNNNNDNNKEEEEEEEEEWEK--KFDEEVSEDKDLHFGLLLAANYLEIPALL 117 (164)
Q Consensus 42 ~I~l~-v~s~~L~~Ii~~~~~~~h~~~-~~~~~~~~~~~~~~~~~~wd~--~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~ 117 (164)
...++ -+.-.=..|+.|++ -+.-+ +..=.. .....-+.+.+|-. .| -.+.....++.|.|..=-.+..|+
T Consensus 192 ~~Q~~~~d~~~T~NVvA~LY--AAilng~~Wf~~-~~~~s~~~fN~WA~~ngf---t~~~~~~~~~~Laa~TgVsVe~lL 265 (302)
T 3d23_B 192 VVQLPVKDYVQTVNVIAWLY--AAILNNCAWFVQ-NDVCSTEDFNVWAMANGF---SQVKADLVLDALASMTGVSIETLL 265 (302)
T ss_dssp SCCCCCCCCBCHHHHHHHHH--HHHHTTCCTTCC-SCCCCHHHHHHHHHHHTB---CCCCCCHHHHHHHHHHSCCHHHHH
T ss_pred hhhccCccceeehhHHHHHH--HHHHcCCceeec-cceecHHHHHHHHHhCCc---ccccchhHHHHHHHHhCCcHHHHH
Confidence 33444 33334456788887 44322 211100 11234567888844 35 345566789999999999999998
Q ss_pred HHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHH
Q 038532 118 DRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEK 152 (164)
Q Consensus 118 ~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee~ 152 (164)
...-+. +.-+.||+ |--...++++|||++--
T Consensus 266 aaI~~L-~~gf~G~~---IlG~~~leDE~Tp~~V~ 296 (302)
T 3d23_B 266 AAIKRL-YMGFQGRQ---ILGSCTFEDELAPSDVY 296 (302)
T ss_dssp HHHHHH-HTCCTTCC---BTTBSSCCCSSCHHHHH
T ss_pred HHHHHH-hcCCCCce---eeccccccccCCHHHHH
Confidence 755443 44445553 55566788899998643
No 37
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=53.39 E-value=16 Score=20.44 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=26.7
Q ss_pred HHHHhcCC-CHHHHHhHcCCCCCCCHHHHHHHHHHcCCc
Q 038532 124 AADIVKGK-TPEEIRRTFNIKKDFTPEEEKAVMDEHGWA 161 (164)
Q Consensus 124 ia~~i~gk-s~eeir~~f~i~~d~t~eee~~i~~e~~W~ 161 (164)
.-.+..|. +.+++|+.-+- .++|++|..+|. +++|-
T Consensus 11 ~D~W~~GT~~~~~mR~AV~~-G~iTQ~E~D~I~-~ypwg 47 (51)
T 2xf7_A 11 LDSWLDGTASEELLRVAVNA-GDLTQEEADKIM-SYPWG 47 (51)
T ss_dssp HHHHHHTCCCHHHHHHHHHH-TSSCHHHHHHHH-TSCTT
T ss_pred HHHHhcchhhHHHHHHHHhc-CcccHHHHHHHH-hCccc
Confidence 34566674 78899988663 479999999984 67874
No 38
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=51.89 E-value=19 Score=24.24 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCCHHHHHhHcC------CCC-CCCHHHHHHHHH
Q 038532 121 CQLAADIVKGKTPEEIRRTFN------IKK-DFTPEEEKAVMD 156 (164)
Q Consensus 121 ~~~ia~~i~gks~eeir~~f~------i~~-d~t~eee~~i~~ 156 (164)
=..||..+.|+|+.+.|+.+. +.. .+|+||.+.+.+
T Consensus 33 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 75 (126)
T 3osg_A 33 WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQ 75 (126)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHH
Confidence 467888888999999998743 433 599999887765
No 39
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=51.74 E-value=3.7 Score=25.59 Aligned_cols=22 Identities=36% Similarity=0.810 Sum_probs=17.1
Q ss_pred HHHHHHhcCCCHHHHHhHcCCC
Q 038532 122 QLAADIVKGKTPEEIRRTFNIK 143 (164)
Q Consensus 122 ~~ia~~i~gks~eeir~~f~i~ 143 (164)
..||..+-|||++|+++.+.++
T Consensus 47 ekIA~~VpGKT~eEVk~hY~~~ 68 (74)
T 4eef_G 47 KKVAQYVKGRTPEEVKKHYELE 68 (74)
T ss_dssp TTTGGGSCSSCHHHHHGGGC--
T ss_pred HHHHHHcCCCCHHHHHHHHHHh
Confidence 3577778899999999999875
No 40
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=51.38 E-value=3.3 Score=20.33 Aligned_cols=12 Identities=58% Similarity=0.537 Sum_probs=9.8
Q ss_pred HHHHHHhhhcCC
Q 038532 101 HFGLLLAANYLE 112 (164)
Q Consensus 101 l~~Ll~AA~~L~ 112 (164)
+.-|+.||.||+
T Consensus 5 vq~LLeAAeyLE 16 (26)
T 1pd7_B 5 IQMLLEAADYLE 16 (26)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 567899999985
No 41
>1jr5_A 10 kDa anti-sigma factor; all-alpha, helix-turn-helix, coiled-coil, transcription; NMR {Enterobacteria phage T4} SCOP: a.150.1.1 PDB: 1tkv_A 1tl6_A 1tlh_A
Probab=51.17 E-value=9.4 Score=24.58 Aligned_cols=33 Identities=21% Similarity=0.512 Sum_probs=26.4
Q ss_pred cCC--CHHHHHhHcCCCCCCCHHHHHHHHHHcCCccCC
Q 038532 129 KGK--TPEEIRRTFNIKKDFTPEEEKAVMDEHGWALHD 164 (164)
Q Consensus 129 ~gk--s~eeir~~f~i~~d~t~eee~~i~~e~~W~~~~ 164 (164)
.|+ |..-+|++++ ++|++|.+++.+|+.|-+++
T Consensus 45 ~G~~~t~~sfr~m~~---~lt~~ek~elieeFn~G~e~ 79 (90)
T 1jr5_A 45 EGRKLNQNSFRKIVS---ELTQEDKKTLIDEFNEGFEG 79 (90)
T ss_dssp SSSCCCSHHHHHHHH---TCCHHHHHHHHTTSSSSSTT
T ss_pred CcchhHHHHHHHHHH---HCCHHHHHHHHHHHhccchH
Confidence 454 5667777776 79999999999999998765
No 42
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=50.56 E-value=10 Score=23.45 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=16.4
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 038532 122 QLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 122 ~~ia~~i~gks~eeir~~f~ 141 (164)
..||..+-|||++|+++.|.
T Consensus 35 e~IA~~V~gKT~eE~~~hY~ 54 (73)
T 1wgx_A 35 SEVAAAVGSRSPEECQRKYM 54 (73)
T ss_dssp HHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 46888889999999987653
No 43
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=49.24 E-value=9 Score=26.04 Aligned_cols=35 Identities=20% Similarity=0.538 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCHHHHHhHc------CCCC-CCCHHHHHHHHH
Q 038532 122 QLAADIVKGKTPEEIRRTF------NIKK-DFTPEEEKAVMD 156 (164)
Q Consensus 122 ~~ia~~i~gks~eeir~~f------~i~~-d~t~eee~~i~~ 156 (164)
..||..+.|+|+.+.|+.+ ++.. .+|+||.+.+.+
T Consensus 26 ~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 67 (131)
T 3zqc_A 26 PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFR 67 (131)
T ss_dssp GGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHH
Confidence 3567777899999999886 4443 599999887765
No 44
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=49.06 E-value=12 Score=22.96 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=14.4
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 038532 122 QLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 122 ~~ia~~i~gks~eeir~~f~ 141 (164)
..||..+ |+|++|+++.+.
T Consensus 35 ~~IA~~l-gRt~~eV~~~y~ 53 (72)
T 2cqq_A 35 EKIAHEL-GRSVTDVTTKAK 53 (72)
T ss_dssp HHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHh-CCCHHHHHHHHH
Confidence 3466666 899999998764
No 45
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=47.16 E-value=14 Score=24.03 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=17.2
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 038532 122 QLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 122 ~~ia~~i~gks~eeir~~f~ 141 (164)
.++|..+.+||++|++..|.
T Consensus 59 a~iA~~L~Nks~nqV~~RFq 78 (95)
T 1ug2_A 59 SVISQQLGNKTPVEVSHRFR 78 (95)
T ss_dssp HHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHH
Confidence 45888999999999999884
No 46
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=46.14 E-value=52 Score=20.53 Aligned_cols=79 Identities=9% Similarity=-0.034 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcccccCCCCCCCCCCCCchhhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHH-HHHHHHH
Q 038532 49 SRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRL-CQLAADI 127 (164)
Q Consensus 49 s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~-~~~ia~~ 127 (164)
+..+++|.+|++ .|..++..+ +.+.=.. ++++...|..++....-+....++... ......+
T Consensus 1 s~~~~~i~~~i~--~~~~~~~~~-----------~~~lA~~----~~~S~~~l~r~fk~~~g~s~~~~~~~~Rl~~A~~l 63 (103)
T 3lsg_A 1 SNAKELIQNIIE--ESYTDSQFT-----------LSVLSEK----LDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLL 63 (103)
T ss_dssp CHHHHHHHHHHH--HHTTCTTCC-----------HHHHHHH----TTCCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH--HHccCCCCC-----------HHHHHHH----HCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 357889999999 887653321 2221112 467777777777777666666665555 2333333
Q ss_pred h--cCCCHHHHHhHcCCCC
Q 038532 128 V--KGKTPEEIRRTFNIKK 144 (164)
Q Consensus 128 i--~gks~eeir~~f~i~~ 144 (164)
+ .+.+..+|-..+|..+
T Consensus 64 L~~~~~si~~iA~~~Gf~~ 82 (103)
T 3lsg_A 64 LLTTELKNYEIAEQVGFED 82 (103)
T ss_dssp HHHCCCCHHHHHHHTTCSC
T ss_pred HHCCCCCHHHHHHHhCCCC
Confidence 3 2578888888888654
No 47
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=45.60 E-value=9.5 Score=24.50 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=16.6
Q ss_pred CCCHHHHHhHcCCCCCCC
Q 038532 130 GKTPEEIRRTFNIKKDFT 147 (164)
Q Consensus 130 gks~eeir~~f~i~~d~t 147 (164)
|.|++|=|+.||++.|+.
T Consensus 43 gltpeeYR~kwGlp~dyP 60 (87)
T 2jsp_A 43 SMTPEEYREKWDLPVDYP 60 (87)
T ss_dssp CSCHHHHHHHTTCGGGCC
T ss_pred CCCHHHHHHHhCCCCCCc
Confidence 999999999999999864
No 48
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=44.70 E-value=22 Score=29.37 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCCHHHHHhHcCCCCCCCH
Q 038532 120 LCQLAADIVKGKTPEEIRRTFNIKKDFTP 148 (164)
Q Consensus 120 ~~~~ia~~i~gks~eeir~~f~i~~d~t~ 148 (164)
+-+-|-.+|.-||||||.+.+|+++|-.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (505)
T 3few_X 164 AKAGIMEKINHKTPEEIYEALGFNKDESQ 192 (505)
T ss_dssp HHHHHHHHTTCCCHHHHHHHTTTTTTHHH
T ss_pred hhhhHHHHhcCCCHHHHHHHhCCCccchH
Confidence 34557788999999999999999998443
No 49
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=43.85 E-value=63 Score=20.84 Aligned_cols=78 Identities=9% Similarity=0.031 Sum_probs=39.3
Q ss_pred ecHHHHHHHHHHhcccccCCCCCCCCCCCCchhhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHH-HHHHH
Q 038532 47 ISSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRL-CQLAA 125 (164)
Q Consensus 47 v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~-~~~ia 125 (164)
+....+.+|++|+. .|...+.. +.+.=.. ++++...|..++... =+....++... .....
T Consensus 4 ~~~~~~~~~~~~i~--~~~~~~~~------------~~~lA~~----~~~S~~~l~r~fk~~-G~s~~~~~~~~Rl~~A~ 64 (120)
T 3mkl_A 4 LQPNMRTRVCTVIN--NNIAHEWT------------LARIASE----LLMSPSLLKKKLREE-ETSYSQLLTECRMQRAL 64 (120)
T ss_dssp -CCCHHHHHHHHHH--TSTTSCCC------------HHHHHHH----TTCCHHHHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH--HhccCCCC------------HHHHHHH----HCcCHHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 44567899999999 87665432 1211111 355666666666542 33333333322 23333
Q ss_pred HHhc--CCCHHHHHhHcCCC
Q 038532 126 DIVK--GKTPEEIRRTFNIK 143 (164)
Q Consensus 126 ~~i~--gks~eeir~~f~i~ 143 (164)
.++. +.+..+|-..+|..
T Consensus 65 ~lL~~~~~si~eIA~~~Gf~ 84 (120)
T 3mkl_A 65 QLIVIHGFSIKRVAVSCGYH 84 (120)
T ss_dssp HHHTSTTCCHHHHHHHTTCS
T ss_pred HHHHcCCCCHHHHHHHHCCC
Confidence 3333 45566655555544
No 50
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=41.13 E-value=36 Score=23.28 Aligned_cols=45 Identities=7% Similarity=-0.076 Sum_probs=34.7
Q ss_pred HHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhc
Q 038532 84 EEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVK 129 (164)
Q Consensus 84 ~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~ 129 (164)
...-.+|+.+ .++.+..++++..|...+.+.|.+.|.++|+..+.
T Consensus 121 ~~~c~~~l~~-~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~ 165 (172)
T 3htm_A 121 KVMCEDALCS-NLSVENAAEILILADLHSADQLKTQAVDFINYHAT 165 (172)
T ss_dssp HHHHHHHHHH-TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 3344456322 36788899999999999999999999999987554
No 51
>3d55_A Antitoxin, uncharacterized protein RV3357/MT3465; tetramer, toxin neutraliSer, toxin inhibitor; 2.13A {Mycobacterium tuberculosis} PDB: 3cto_A 3oei_A* 3oei_E*
Probab=40.40 E-value=18 Score=22.81 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=16.3
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHHHhcCC-----CHHHHHhHcCCC
Q 038532 102 FGLLLAANYLEIPALLDRLCQLAADIVKGK-----TPEEIRRTFNIK 143 (164)
Q Consensus 102 ~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gk-----s~eeir~~f~i~ 143 (164)
-.+....+.|..+.+.+...+.++..-.|+ +.+|+++.+|+.
T Consensus 44 ~~l~et~~ll~~~~~~~~l~~a~~~~~~G~~~~~~~l~el~~~lg~~ 90 (91)
T 3d55_A 44 DAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAGGE 90 (91)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHTC----------------------
T ss_pred hhHHHHHHHHhChHHHHHHHHHHHHHHcCCCccCCCHHHHHHHhCCC
Confidence 344455666777777777777776665665 448899999874
No 52
>1lvo_A Replicase, hydrolase domain; 3C like, corona, proteinase, chymotrypsin, cysteine histidine DYAD, beta barrel; 1.96A {Transmissible gastroenteritis virus} SCOP: b.47.1.4 PDB: 1p9u_A 2amp_A*
Probab=39.91 E-value=10 Score=29.66 Aligned_cols=100 Identities=20% Similarity=0.243 Sum_probs=59.4
Q ss_pred cccce-ecHHHHHHHHHHhcccccCCCC-C-CCCCCCCchhhhhHHHHHHH--hhhhhcCcHHHHHHHHHhhhcCCChhH
Q 038532 42 EIPVQ-ISSRNLAKIVEWCKCMQHRDRN-N-NNNDNNKEEEEEEEEEWEKK--FDEEVSEDKDLHFGLLLAANYLEIPAL 116 (164)
Q Consensus 42 ~I~l~-v~s~~L~~Ii~~~~~~~h~~~~-~-~~~~~~~~~~~~~~~~wd~~--F~~~l~~~~~~l~~Ll~AA~~L~I~~L 116 (164)
...++ -+.-.=..|+.|++ -+.-+. + ... .....-+.+.+|-.. | -.+.....++.|.|..=-.+..|
T Consensus 189 ~~Q~~~~~~~~T~NVvA~LY--AAilng~~wfl~--~~~~s~~~fN~WA~~ngf---t~~~~~~~~~~Laa~TgVsVe~l 261 (302)
T 1lvo_A 189 SMQLEGTNVMSSDNVVAFLY--AALINGERWFVT--NTSMSLESYNTWAKTNSF---TELSSTDAFSMLAAKTGQSVEKL 261 (302)
T ss_dssp CCCCCCCCCBCHHHHHHHHH--HHHHTTCCTTCC--SCCCCHHHHHHHHTTTTB---CCCCCSGGGHHHHHHHCCCHHHH
T ss_pred hhhccCcceeeehhHHHHHH--HHHHcCCceeec--cceecHHHHHHHHHhCCc---ccccchhHhHHHHHHhCCcHHHH
Confidence 33444 33334456788887 443221 1 111 112345667888443 4 33455668999999999999998
Q ss_pred HHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHHH
Q 038532 117 LDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEEK 152 (164)
Q Consensus 117 ~~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee~ 152 (164)
+...-+. +.-+.|++ |--...++++|||++--
T Consensus 262 LaaI~~L-~~g~~G~~---IlG~~~leDE~Tp~~V~ 293 (302)
T 1lvo_A 262 LDSIVRL-NKGFGGRT---ILSYGSLCDEFTPTEVI 293 (302)
T ss_dssp HHHHHHH-TTCCTTCC---BTTBSSCCCCSCHHHHH
T ss_pred HHHHHHH-hcCCCCce---ecccccccccCCHHHHH
Confidence 8765443 44444553 45556788899998643
No 53
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=39.07 E-value=57 Score=24.49 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=43.0
Q ss_pred HHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhc---------CCCHHHHHhHcCC
Q 038532 85 EWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVK---------GKTPEEIRRTFNI 142 (164)
Q Consensus 85 ~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~---------gks~eeir~~f~i 142 (164)
..-.+|+.+ .++.+..+.++..|...+.+.|.+.|..+++..+. ..+.+++.+.++=
T Consensus 129 ~~c~~~L~~-~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~ 194 (279)
T 3i3n_A 129 EFCGEFLKK-KLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSD 194 (279)
T ss_dssp HHHHHHHHH-HCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHHHHTTSSGGGGSCHHHHHHHHTC
T ss_pred HHHHHHHHH-cCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCcChhcCCHHHHHHHhcC
Confidence 334456422 36778899999999999999999999888865542 3478888888874
No 54
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=38.88 E-value=21 Score=21.34 Aligned_cols=35 Identities=9% Similarity=0.187 Sum_probs=21.8
Q ss_pred CCCCCeEEEEcCCCCEEEecHHHHHHHHHHHHHHH
Q 038532 1 MATTSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIE 35 (164)
Q Consensus 1 m~~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~~~ 35 (164)
|++...|.+++.+|+.+.++...-.--.-|+..+.
T Consensus 1 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~ 35 (79)
T 3phx_B 1 MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVS 35 (79)
T ss_dssp --CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHH
T ss_pred CCCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHH
Confidence 66767899999999998876543222334444444
No 55
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=38.40 E-value=32 Score=23.65 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCCHHHHHhHc
Q 038532 120 LCQLAADIVKGKTPEEIRRTF 140 (164)
Q Consensus 120 ~~~~ia~~i~gks~eeir~~f 140 (164)
++-.++++++|||.+|.++..
T Consensus 70 SaS~~te~i~Gkt~~ea~~i~ 90 (138)
T 2qq4_A 70 SASLMTEAVKGKKVAEALELS 90 (138)
T ss_dssp HHHHHHHHHTTSBHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHH
Confidence 356779999999999998875
No 56
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=38.10 E-value=24 Score=20.43 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=16.9
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 038532 122 QLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 122 ~~ia~~i~gks~eeir~~f~ 141 (164)
..||..+.|+|+.++|..+.
T Consensus 32 ~~Ia~~~~~Rt~~qcr~r~~ 51 (60)
T 1x41_A 32 QDVANQMCTKTKEECEKHYM 51 (60)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHH
Confidence 66888889999999998753
No 57
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=37.66 E-value=41 Score=23.78 Aligned_cols=34 Identities=18% Similarity=0.404 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHhH--------cCCCCCCCHH
Q 038532 116 LLDRLCQLAADIVKGKTPEEIRRT--------FNIKKDFTPE 149 (164)
Q Consensus 116 L~~l~~~~ia~~i~gks~eeir~~--------f~i~~d~t~e 149 (164)
++.-.++.+...+.|+||+||.++ +|+..-+||-
T Consensus 87 IvkGL~AlL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSps 128 (155)
T 1ni7_A 87 IVRGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSAS 128 (155)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCch
Confidence 334445566677899999999654 6788778874
No 58
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=37.57 E-value=31 Score=23.48 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=23.4
Q ss_pred HHhhhcCCChhHH-HHHHHHHHHHhcCCCHHHHHhHcC
Q 038532 105 LLAANYLEIPALL-DRLCQLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 105 l~AA~~L~I~~L~-~l~~~~ia~~i~gks~eeir~~f~ 141 (164)
+..+.|-.-=--+ -.++-.++++++|||.+|.++..+
T Consensus 54 I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~ 91 (129)
T 3lvl_A 54 IEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKN 91 (129)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4444444333333 334567799999999999987643
No 59
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=37.02 E-value=31 Score=24.00 Aligned_cols=35 Identities=23% Similarity=0.511 Sum_probs=27.2
Q ss_pred HHHHHHhcCCCHHHHHhHcC------CC-CCCCHHHHHHHHH
Q 038532 122 QLAADIVKGKTPEEIRRTFN------IK-KDFTPEEEKAVMD 156 (164)
Q Consensus 122 ~~ia~~i~gks~eeir~~f~------i~-~d~t~eee~~i~~ 156 (164)
..||..+.|.|..++|..+. +. ..+|+||.+.+.+
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 123 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 123 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHH
Confidence 56888889999999998753 33 3599998887765
No 60
>2q6f_A Fragment, infectious bronchitis virus (IBV) main protease; coronavirus, 3C-like proteinase, michael acceptor inhibitor, hydrolase; HET: 3IH; 2.00A {Infectious bronchitis virus} PDB: 2q6d_A*
Probab=36.65 E-value=33 Score=26.88 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=47.5
Q ss_pred hhhhHHHHHHH--hhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCCCHHHH
Q 038532 79 EEEEEEEWEKK--FDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDFTPEEE 151 (164)
Q Consensus 79 ~~~~~~~wd~~--F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~t~eee 151 (164)
.-+.+.+|-.. | -.......++.|.|..=-.+..|+...- .++.-+.|++ |--...++++|||++-
T Consensus 232 s~e~fN~WA~~ngf---t~~~~~~~~~~Laa~TGVsVe~lL~aI~-~L~~gf~G~~---IlG~~~leDE~Tp~~V 299 (309)
T 2q6f_A 232 SIEDYNRWASDNGF---TPFSTSTAITKLSAITGVDVCKLLRTIM-VKSAQWGSDP---ILGQYNFEDELTPESV 299 (309)
T ss_dssp CHHHHHHHHHHHTB---CCCCCCHHHHHHHHHHTCCHHHHHHHHH-HHHHCCCSCC---BTTBSSCCCSCCHHHH
T ss_pred cHHHHHHHHHhCCC---cccchhhHHHHHHHHhCCcHHHHHHHHH-HHhcCCCCce---ecccccccccCCHHHH
Confidence 45677888443 5 3456678999999999999999988665 5555556664 4445668888999864
No 61
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=36.55 E-value=35 Score=23.73 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=23.8
Q ss_pred HHhhhcCCChhHHHHH-HHHHHHHhcCCCHHHHHhHcC
Q 038532 105 LLAANYLEIPALLDRL-CQLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 105 l~AA~~L~I~~L~~l~-~~~ia~~i~gks~eeir~~f~ 141 (164)
+..+.|-.-=--+..+ +-.++++++|||.+|.++..+
T Consensus 56 I~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 93 (147)
T 1xjs_A 56 VEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSK 93 (147)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4444444433333333 567799999999999988753
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.54 E-value=22 Score=20.76 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=16.0
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 038532 122 QLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 122 ~~ia~~i~gks~eeir~~f~ 141 (164)
..||..+.|+|+.++++++-
T Consensus 35 ~~Ia~~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 35 GLIASYLERKSVPDCVLYYY 54 (61)
T ss_dssp HHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 45678889999999988753
No 63
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=36.52 E-value=21 Score=23.01 Aligned_cols=20 Identities=35% Similarity=0.727 Sum_probs=17.4
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 038532 122 QLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 122 ~~ia~~i~gks~eeir~~f~ 141 (164)
..||..+-|+|.+|+|..|.
T Consensus 35 ~~IA~~vpGRT~~q~k~ry~ 54 (93)
T 2cjj_A 35 ANVARAVEGRTPEEVKKHYE 54 (93)
T ss_dssp HHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 57888999999999998875
No 64
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=35.15 E-value=10 Score=29.89 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=27.0
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCC
Q 038532 101 HFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDF 146 (164)
Q Consensus 101 l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~ 146 (164)
+..++.||..+|+-.. ++.|-.++++|+.|||++++
T Consensus 245 ~~nl~LaA~~~GLgs~----------~~~~~~~~~v~~~L~lP~~~ 280 (322)
T 4eo3_A 245 VGNLLVQATQMGLVAH----------PVAGYDPVKVKEILKIPEDH 280 (322)
T ss_dssp HHHHHHHHHHTTCEEE----------EECCSCHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHcCcCEE----------EcCccCHHHHHHHcCcCCCC
Confidence 4567777777777542 35567899999999999875
No 65
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=34.18 E-value=34 Score=23.75 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=21.0
Q ss_pred HHHHHHHHhcCCCHHHHHhH--------cCCCCCCCH
Q 038532 120 LCQLAADIVKGKTPEEIRRT--------FNIKKDFTP 148 (164)
Q Consensus 120 ~~~~ia~~i~gks~eeir~~--------f~i~~d~t~ 148 (164)
.++.+...+.|+||+||.++ +|+...+||
T Consensus 84 l~alL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSp 120 (141)
T 3g0m_A 84 LMAVVFILYHQMTAQDIVHFDVRPWFEKMALAQHLTP 120 (141)
T ss_dssp HHHHHHHHHTTCBHHHHHHCCCHHHHHHHTCGGGSCH
T ss_pred HHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCc
Confidence 34555666799999999754 577777776
No 66
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=33.83 E-value=46 Score=23.46 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=23.7
Q ss_pred HHhhhcCCChhHHHHH-HHHHHHHhcCCCHHHHHhHcC
Q 038532 105 LLAANYLEIPALLDRL-CQLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 105 l~AA~~L~I~~L~~l~-~~~ia~~i~gks~eeir~~f~ 141 (164)
+..+.|-.-=--+-.+ +-.++++++|||.+|.++..+
T Consensus 55 I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 92 (159)
T 1su0_B 55 IEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALAD 92 (159)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4444444333333333 466799999999999988754
No 67
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=33.76 E-value=45 Score=21.50 Aligned_cols=19 Identities=16% Similarity=0.378 Sum_probs=14.5
Q ss_pred HHHHHHh-----cCCCHHHHHhHc
Q 038532 122 QLAADIV-----KGKTPEEIRRTF 140 (164)
Q Consensus 122 ~~ia~~i-----~gks~eeir~~f 140 (164)
..|++.. .+.|.++|+..|
T Consensus 53 ~vI~DRy~~~~~~~Rt~EdLK~Ry 76 (93)
T 3hm5_A 53 VVIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp HHHHHHSCTTTSCCCCHHHHHHHH
T ss_pred eeehhhhccCCCCCCCHHHHHHHH
Confidence 3578887 468999998775
No 68
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=33.74 E-value=1.4e+02 Score=22.02 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcccccCCCCC
Q 038532 50 RNLAKIVEWCKCMQHRDRNN 69 (164)
Q Consensus 50 ~~L~~Ii~~~~~~~h~~~~~ 69 (164)
..+.++++|++ .|...+.
T Consensus 3 ~~~~~~~~~i~--~~~~~~~ 20 (292)
T 1d5y_A 3 GIIRDLLIWLE--GHLDQPL 20 (292)
T ss_dssp HHHHHHHHHHH--TTSSSSC
T ss_pred HHHHHHHHHHH--hCCCCCC
Confidence 56889999999 8875443
No 69
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=33.42 E-value=72 Score=23.51 Aligned_cols=74 Identities=11% Similarity=0.122 Sum_probs=46.1
Q ss_pred HHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhc---------CCCHHHHHhHcCCCCCCC-HHHHHHHHHH
Q 038532 88 KKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADIVK---------GKTPEEIRRTFNIKKDFT-PEEEKAVMDE 157 (164)
Q Consensus 88 ~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~---------gks~eeir~~f~i~~d~t-~eee~~i~~e 157 (164)
.+|+.+ .++.+..+.++..|...+.+.|.+.|..+++..+. ..+.+++.+.+.=. ++. +.|++-.+-=
T Consensus 124 ~~~L~~-~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~~v~~~~~f~~L~~~~l~~lL~~d-~L~v~~E~~v~~av 201 (256)
T 3hve_A 124 CEFLEG-CIAAENCIGIRDFALHYCLHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLE-KLNVGNERYVFEAV 201 (256)
T ss_dssp HHHHHH-TCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHSSCHHHHHHHHHCC--------CTTHHHH
T ss_pred HHHHHh-hCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhCCcchhcCCHHHHHHHHccC-CCCCCCHHHHHHHH
Confidence 356322 36777889999999999999999999888875543 34567777666532 233 2233333333
Q ss_pred cCCccC
Q 038532 158 HGWALH 163 (164)
Q Consensus 158 ~~W~~~ 163 (164)
..|+.+
T Consensus 202 ~~W~~~ 207 (256)
T 3hve_A 202 IRWIAH 207 (256)
T ss_dssp TTTCCC
T ss_pred HHHHHc
Confidence 667654
No 70
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=33.05 E-value=31 Score=21.41 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=25.5
Q ss_pred cHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcC
Q 038532 97 DKDLHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 97 ~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~ 141 (164)
..++-.-|+.|-.-.+ . -=..||..+.++|+.|+|..|.
T Consensus 22 T~eEd~~Ll~~v~~~G-~-----~W~~IA~~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 22 TEQETLLLLEALEMYK-D-----DWNKVSEHVGSRTQDECILHFL 60 (79)
T ss_dssp CHHHHHHHHHHHHHSS-S-----CHHHHHHHHSSCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC-C-----CHHHHHHHcCCCCHHHHHHHHH
Confidence 3444444444444444 1 1367888899999999998865
No 71
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=39.14 E-value=9.2 Score=23.46 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=16.7
Q ss_pred HHHHHHHHhcCCCHHHHHhHcC
Q 038532 120 LCQLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 120 ~~~~ia~~i~gks~eeir~~f~ 141 (164)
+-+.+|..+ +||++|+...|.
T Consensus 38 tfa~iA~~L-nks~~QV~~RF~ 58 (70)
T 2lr8_A 38 TFAYLAAKL-DKNPNQVSERFQ 58 (70)
Confidence 345678888 899999988875
No 72
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=31.27 E-value=30 Score=17.66 Aligned_cols=11 Identities=55% Similarity=0.727 Sum_probs=6.5
Q ss_pred CHHHHHHHHHH
Q 038532 147 TPEEEKAVMDE 157 (164)
Q Consensus 147 t~eee~~i~~e 157 (164)
||||..++++|
T Consensus 13 tpeelkklkee 23 (36)
T 2ki0_A 13 TPEELKKLKEE 23 (36)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 56666666554
No 73
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.45 E-value=36 Score=21.86 Aligned_cols=46 Identities=9% Similarity=-0.007 Sum_probs=35.4
Q ss_pred CcHHHHHHHHHhhhcCCChhHHHHHHHHHHHHhc---------CCCHHHHHhHcC
Q 038532 96 EDKDLHFGLLLAANYLEIPALLDRLCQLAADIVK---------GKTPEEIRRTFN 141 (164)
Q Consensus 96 ~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~---------gks~eeir~~f~ 141 (164)
++.++.+.++..|...+.+.|.+.|-+++...+. .-+.+++..++.
T Consensus 8 L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF~~v~~~~eFl~L~~~~L~~lL~ 62 (105)
T 2eqx_A 8 VQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIIS 62 (105)
T ss_dssp CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTCHHHHTSHHHHHSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccHhhCCHHHHHHHHc
Confidence 6778899999999999999999999888865432 235666666655
No 74
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=30.41 E-value=16 Score=22.41 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCCHHHHHhHcC
Q 038532 121 CQLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 121 ~~~ia~~i~gks~eeir~~f~ 141 (164)
=..||..+-|+|..|+|..|.
T Consensus 44 W~~IA~~vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 44 WDKIARCVPSKSKEDCIARYK 64 (73)
T ss_dssp HHHHGGGCSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 357888889999999998864
No 75
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.19 E-value=36 Score=20.49 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCCHHHHHhHc
Q 038532 121 CQLAADIVKGKTPEEIRRTF 140 (164)
Q Consensus 121 ~~~ia~~i~gks~eeir~~f 140 (164)
-..||..+.|+|..|+|..+
T Consensus 36 W~~IA~~~~~Rt~~qcr~r~ 55 (75)
T 2yum_A 36 WQKIADELGNRTAKQVASQV 55 (75)
T ss_dssp HHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 46788889999999999876
No 76
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=29.68 E-value=40 Score=19.29 Aligned_cols=20 Identities=35% Similarity=0.386 Sum_probs=16.5
Q ss_pred HHHHHHHhc-CCCHHHHHhHc
Q 038532 121 CQLAADIVK-GKTPEEIRRTF 140 (164)
Q Consensus 121 ~~~ia~~i~-gks~eeir~~f 140 (164)
=..||..+. |+|+.+.|..+
T Consensus 32 W~~IA~~~~~~Rt~~qcr~r~ 52 (58)
T 2elk_A 32 WADIADYVGNARTKEECRDHY 52 (58)
T ss_dssp HHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHH
Confidence 356788898 89999999865
No 77
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=29.60 E-value=35 Score=20.52 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=10.7
Q ss_pred CCCCCeEEEEcCCCCEEEe
Q 038532 1 MATTSTVKLRSSDNEVFEV 19 (164)
Q Consensus 1 m~~~~~i~l~s~DG~~f~v 19 (164)
|||+ ...+.+.||+.+..
T Consensus 1 ~sSS-~yVitt~DG~~IvT 18 (64)
T 2ra2_A 1 MSGP-NYVMHTNDGRSIVT 18 (64)
T ss_dssp ---C-CEEEEETTSCEEEC
T ss_pred CCCC-CEEEEeCCCcEEEc
Confidence 6664 56777888888753
No 78
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=28.47 E-value=37 Score=25.25 Aligned_cols=65 Identities=14% Similarity=0.298 Sum_probs=41.6
Q ss_pred cHHHHHHHHHhhhcCCChhHHHHHH--------HHHHHHhcCCCHHHHHhHcCCCCCCCHHHHHHHHHHcCCccCC
Q 038532 97 DKDLHFGLLLAANYLEIPALLDRLC--------QLAADIVKGKTPEEIRRTFNIKKDFTPEEEKAVMDEHGWALHD 164 (164)
Q Consensus 97 ~~~~l~~Ll~AA~~L~I~~L~~l~~--------~~ia~~i~gks~eeir~~f~i~~d~t~eee~~i~~e~~W~~~~ 164 (164)
+-..++.+...+.......|++... +.+..-...-+..++.+.+|.++ ++|.++.-++..|...|
T Consensus 149 nY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s---~~e~~~f~~~~gw~i~d 221 (229)
T 4b0z_A 149 AFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLEN---TKETEKLAEERGWDIRD 221 (229)
T ss_dssp CHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSS---HHHHHHHHHHHTCEEET
T ss_pred CHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCC---HHHHHHHHHHcCCEEeC
Confidence 3455667776665444444544432 22222333458999999999975 57788888888998643
No 79
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1
Probab=27.38 E-value=14 Score=26.47 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=28.4
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCC
Q 038532 100 LHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDF 146 (164)
Q Consensus 100 ~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~ 146 (164)
.+..|+.||..||+-.. ++.|-..+++++.|||++++
T Consensus 117 a~~nl~LaA~~~Glgs~----------~~~~~~~~~~~~~l~lp~~~ 153 (200)
T 2fre_A 117 AWFSLAMQAHLLGYHAH----------GMGGIFKDRIVEKLDIPDGF 153 (200)
T ss_dssp HHHHHHHHHHHTTCEEE----------EECCBCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHHHHCCccee----------eEcccCHHHHHHHcCCCCCc
Confidence 46788888888888652 24466889999999999763
No 80
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=27.24 E-value=1.3e+02 Score=19.53 Aligned_cols=21 Identities=10% Similarity=0.359 Sum_probs=15.9
Q ss_pred ecHHHHHHHHHHhcccccCCCCC
Q 038532 47 ISSRNLAKIVEWCKCMQHRDRNN 69 (164)
Q Consensus 47 v~s~~L~~Ii~~~~~~~h~~~~~ 69 (164)
-....+.+|++|+. .|...+.
T Consensus 8 ~~~~~i~~~~~~i~--~~~~~~~ 28 (129)
T 1bl0_A 8 TDAITIHSILDWIE--DNLESPL 28 (129)
T ss_dssp -CHHHHHHHHHHHH--TTTTSCC
T ss_pred chHHHHHHHHHHHH--HccCCCC
Confidence 35678899999999 8876653
No 81
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=27.08 E-value=54 Score=24.24 Aligned_cols=93 Identities=13% Similarity=0.245 Sum_probs=59.9
Q ss_pred CeEEEEcCCCCEEEecHHHHHHH--HHHHHHHHhc---C----CCCcccceecHHHHHHHHHHhcccccCCCCCCCCCCC
Q 038532 5 STVKLRSSDNEVFEVEKQVMIQS--GTIRNMIEDD---A----ADGEIPVQISSRNLAKIVEWCKCMQHRDRNNNNNDNN 75 (164)
Q Consensus 5 ~~i~l~s~DG~~f~v~~~~a~~S--~~l~~~~~~~---~----~~~~I~l~v~s~~L~~Ii~~~~~~~h~~~~~~~~~~~ 75 (164)
..|+|-= .|+.|.+....+..- .+|..|+... + ..+.+-+.-++..++.|+.|+. .-. -..+
T Consensus 12 ~~V~LNV-GG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFIDRDP~~F~~ILnyLR--tG~-L~lP----- 82 (202)
T 3drx_A 12 KWVRLNV-GGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLIDRDPTYFGPVLNYLR--HGK-LVIN----- 82 (202)
T ss_dssp CEEEEEE-TTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEECSCSTTHHHHHHHHH--HSC-CCCC-----
T ss_pred CEEEEEE-CCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEecCChHHHHHHHHHhc--CCc-cCCC-----
Confidence 4566554 499999998876532 2456665431 0 1234444478999999999998 421 1111
Q ss_pred CchhhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHHHHHHHHH
Q 038532 76 KEEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRLCQLAADI 127 (164)
Q Consensus 76 ~~~~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~~~~ia~~ 127 (164)
. ++ . ...++..|.|.+|.+|+++|-..+..+
T Consensus 83 -----~-------~~------~---~~~l~eEA~FygL~~Lv~~l~~~i~er 113 (202)
T 3drx_A 83 -----K-------DL------A---EEGVLEEAEFYNITSLIKLVKDKIRER 113 (202)
T ss_dssp -----T-------TS------C---HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----C-------CC------C---HHHHHHHHHHCCcHHHHHHHHHHHHHH
Confidence 0 11 2 135788999999999999998877544
No 82
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=26.95 E-value=40 Score=23.82 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCCHHHHHhHcC
Q 038532 120 LCQLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 120 ~~~~ia~~i~gks~eeir~~f~ 141 (164)
++-.++.+++|||.+|.++..+
T Consensus 69 SaS~mte~v~Gkt~~EA~~i~~ 90 (157)
T 2z7e_A 69 VSSMLTEMVKGKPIQYALNLTY 90 (157)
T ss_dssp HHHHHHHHHTTSBHHHHHHCCH
T ss_pred HHHHHHHHHcCCcHHHHHHHHh
Confidence 4567899999999999987654
No 83
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=26.71 E-value=43 Score=22.10 Aligned_cols=21 Identities=10% Similarity=0.232 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCCHHHHHhHcC
Q 038532 121 CQLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 121 ~~~ia~~i~gks~eeir~~f~ 141 (164)
++.+|+.|+|+++++-..++.
T Consensus 13 ~r~va~~IrG~~v~eAl~~L~ 33 (110)
T 2ftc_M 13 MWYLAKLIRGMSIDQALAQLE 33 (110)
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 457899999999999888876
No 84
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=26.55 E-value=1.2e+02 Score=19.04 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHhcccccCCCCCCCCCCCCchhhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHH-HHHHHH
Q 038532 48 SSRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRL-CQLAAD 126 (164)
Q Consensus 48 ~s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~-~~~ia~ 126 (164)
....+.++++|+. .|...+.. +.+.= +- ++++...|..++....-+....++... ......
T Consensus 5 ~~~~i~~~~~~i~--~~~~~~~~------------~~~lA-~~---~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~ 66 (113)
T 3oio_A 5 SQPKLTEAVSLME--ANIEEPLS------------TDDIA-YY---VGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQ 66 (113)
T ss_dssp GCHHHHHHHHHHH--TCSSSCCC------------HHHHH-HH---HTSCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH--hhhcCCCC------------HHHHH-HH---HCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3567889999999 88765532 11111 11 355555566665555444444443333 222222
Q ss_pred Hhc--CCCHHHHHhHcCCCC
Q 038532 127 IVK--GKTPEEIRRTFNIKK 144 (164)
Q Consensus 127 ~i~--gks~eeir~~f~i~~ 144 (164)
++. +.+..||-..+|..+
T Consensus 67 lL~~~~~~i~eIA~~~Gf~~ 86 (113)
T 3oio_A 67 LLQQTSKSIVQIGLACGFSS 86 (113)
T ss_dssp HHHHCCCCHHHHHHHTTCSC
T ss_pred HHHcCCCCHHHHHHHHCCCC
Confidence 222 456666655555543
No 85
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=26.44 E-value=47 Score=27.47 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCHHHHHhHcCCCCCCCH-HHHHHHHHHcCC
Q 038532 121 CQLAADIVKGKTPEEIRRTFNIKKDFTP-EEEKAVMDEHGW 160 (164)
Q Consensus 121 ~~~ia~~i~gks~eeir~~f~i~~d~t~-eee~~i~~e~~W 160 (164)
-+-|-+++..|||+||-+-+|+..|-++ ++..+.+-.+.|
T Consensus 252 kagim~k~~hktpeeiyealgfn~de~qrq~~ak~~a~d~~ 292 (505)
T 3few_X 252 KAGIMDKVDHKTPEEIYEALGFNNEEPQRQNQAKKAAYDVF 292 (505)
T ss_dssp HHHHHHHTTCCCHHHHHHHHTTTTTHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhccCCHHHHHHHhCCCccchHHHHHHHHHHHHHH
Confidence 4556778999999999999999988532 333344444444
No 86
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0
Probab=26.33 E-value=13 Score=26.77 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=22.5
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCC-CCCC
Q 038532 103 GLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNI-KKDF 146 (164)
Q Consensus 103 ~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i-~~d~ 146 (164)
.++.||..||+... .+.|-..+++|+.||| ++++
T Consensus 148 nl~LaA~~~Glgsc----------~i~~~~~~~v~~~L~l~p~~~ 182 (212)
T 3ge6_A 148 QLMLVARAHGYDTN----------PIGGYEKDQIAEAFGMEKDRY 182 (212)
T ss_dssp HHHHHHHHTTCEEE----------EECCSCHHHHHHHTTCCSSSE
T ss_pred HHHHHHHHcCCCee----------eecccCHHHHHHHhCCCCCCc
Confidence 45555555555432 2345678999999999 7764
No 87
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=25.97 E-value=53 Score=22.06 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=16.7
Q ss_pred CCCeEEEEcCCCCEEEecHH
Q 038532 3 TTSTVKLRSSDNEVFEVEKQ 22 (164)
Q Consensus 3 ~~~~i~l~s~DG~~f~v~~~ 22 (164)
+++.+++.|.||+.+.|...
T Consensus 37 ~g~~~~l~s~Dg~~Vtv~l~ 56 (121)
T 3kdf_A 37 TGKMFILSDGEGKNGTIELM 56 (121)
T ss_dssp TSSEEEEECTTSCEEEEECS
T ss_pred CCCEEEEEeCCCCEEEEEeC
Confidence 35789999999999998763
No 88
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*
Probab=25.70 E-value=13 Score=26.67 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=24.3
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCC-CCC
Q 038532 101 HFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIK-KDF 146 (164)
Q Consensus 101 l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~-~d~ 146 (164)
+..|+.||..||+... ++.|-..+++++.|||+ +++
T Consensus 147 ~~nl~LaA~~~Glgs~----------~~~~~~~~~v~~~l~lp~~~~ 183 (218)
T 1vfr_A 147 LGNALHTLARLNIDST----------TMEGIDPELLSEIFADELKGY 183 (218)
T ss_dssp HHHHHHHHHHHTCEEE----------EECCSCHHHHHHHTTTTTTTE
T ss_pred HHHHHHHHHHcCCCcc----------cccccCHHHHHHHhCCCcccc
Confidence 4456666666666541 23456789999999998 663
No 89
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=25.07 E-value=46 Score=23.43 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=17.0
Q ss_pred HHHHHHHHHhcCCCHHHHHhHc
Q 038532 119 RLCQLAADIVKGKTPEEIRRTF 140 (164)
Q Consensus 119 l~~~~ia~~i~gks~eeir~~f 140 (164)
.++-.++.+++|||.+|.++..
T Consensus 63 ASaS~mtelv~GKtleEA~~i~ 84 (153)
T 4eb5_C 63 ATSSMATEMAKGKTIEEALKIT 84 (153)
T ss_dssp HHHHHHHHHHTTCBHHHHTTCC
T ss_pred HHHHHHHHHHcCCCHHHHHHhh
Confidence 3456778999999999987543
No 90
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=24.88 E-value=94 Score=17.24 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCCHHHHHhH
Q 038532 120 LCQLAADIVKGKTPEEIRRT 139 (164)
Q Consensus 120 ~~~~ia~~i~gks~eeir~~ 139 (164)
.++.++.+++.+.|++++..
T Consensus 9 kSk~L~~Ll~s~~P~Dlq~A 28 (45)
T 1j2j_B 9 KSKMLARLLKSSHPEDLRAA 28 (45)
T ss_dssp HHHHHHHHHTCSCHHHHHHH
T ss_pred HHHHHHHHHHcCChhhHHHH
Confidence 46788999999999988754
No 91
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=24.69 E-value=49 Score=21.24 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=10.1
Q ss_pred cCCCHHHHHhHc
Q 038532 129 KGKTPEEIRRTF 140 (164)
Q Consensus 129 ~gks~eeir~~f 140 (164)
.|+|.+||+.+|
T Consensus 55 ~G~Sd~eI~~~m 66 (90)
T 2kw0_A 55 EGKSKKEIVDYM 66 (90)
T ss_dssp HTCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 499999998874
No 92
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=24.49 E-value=28 Score=19.66 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=10.6
Q ss_pred HHHHHHHHHHcCCc
Q 038532 148 PEEEKAVMDEHGWA 161 (164)
Q Consensus 148 ~eee~~i~~e~~W~ 161 (164)
.....+++.||+|+
T Consensus 27 kk~iKklEdeNPWL 40 (50)
T 1a92_A 27 KKKIKKLEEDNPWL 40 (50)
T ss_dssp HHHHHHHHHHCTTH
T ss_pred HHHHHhhhccCCch
Confidence 34566888899996
No 93
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=24.47 E-value=19 Score=25.84 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=26.9
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCC
Q 038532 101 HFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDF 146 (164)
Q Consensus 101 l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~ 146 (164)
+..|+.||..||+-.. ++.|-..+++++.|||++++
T Consensus 119 ~~nl~LaA~~lGLgsc----------~~~~~~~~~v~~~l~lp~~~ 154 (191)
T 3h4o_A 119 TDHMMLQATELGLASV----------WVCYFNPDIIREEFSLPDNL 154 (191)
T ss_dssp HHHHHHHHHHTTCEEE----------EECCSCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHHHCCCCEE----------EEcccCHHHHHHHhCcCCCc
Confidence 5677788888887654 23456789999999998764
No 94
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=24.29 E-value=49 Score=21.83 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCCHHHHHhHcC
Q 038532 121 CQLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 121 ~~~ia~~i~gks~eeir~~f~ 141 (164)
++.+|+.|+|+++++-..++.
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~ 37 (110)
T 1i4j_A 17 VRLVVDLIRGKSLEEARNILR 37 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 456899999999988877765
No 95
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=24.07 E-value=46 Score=20.41 Aligned_cols=36 Identities=8% Similarity=0.183 Sum_probs=21.4
Q ss_pred CCCCCeEEEEcCCCCEEEecHHHHHHHHHHHHHHHh
Q 038532 1 MATTSTVKLRSSDNEVFEVEKQVMIQSGTIRNMIED 36 (164)
Q Consensus 1 m~~~~~i~l~s~DG~~f~v~~~~a~~S~~l~~~~~~ 36 (164)
|.+.-.|.+++.+|+.+.++...-.--.-|+..+..
T Consensus 1 m~~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~ 36 (88)
T 2hj8_A 1 MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSG 36 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHH
T ss_pred CCccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHH
Confidence 667677999999999887654321122334444443
No 96
>2rb6_A Uncharacterized protein; NESG, Q8EI81_sheon, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.50A {Shewanella oneidensis} SCOP: b.38.1.6
Probab=24.06 E-value=68 Score=19.03 Aligned_cols=17 Identities=12% Similarity=0.309 Sum_probs=10.7
Q ss_pred CCCCCeEEEEcCCCCEEEe
Q 038532 1 MATTSTVKLRSSDNEVFEV 19 (164)
Q Consensus 1 m~~~~~i~l~s~DG~~f~v 19 (164)
||| ...+.+.||+.+..
T Consensus 1 ~SS--~yvitT~DG~~IvT 17 (61)
T 2rb6_A 1 MSS--QYIMSTKDGKMITS 17 (61)
T ss_dssp -CC--EEEEEETTSCEEEE
T ss_pred CCC--cEEEEeCCCcEEEc
Confidence 454 56677788877753
No 97
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0
Probab=24.01 E-value=23 Score=25.27 Aligned_cols=36 Identities=8% Similarity=0.254 Sum_probs=24.5
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCC
Q 038532 101 HFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDF 146 (164)
Q Consensus 101 l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~ 146 (164)
+..++.||..||+... ++.|-..+++++.|||++++
T Consensus 140 ~~nl~LaA~~~Glgsc----------~~~~~~~~~v~~~L~lp~~~ 175 (206)
T 3gag_A 140 AMNLMQVVRVYGYDSV----------PMRGVDFDAIKTYLDMPNGW 175 (206)
T ss_dssp HHHHHHHHHHTTCEEC----------CBCCSCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHHHcCCCee----------eecccCHHHHHHHhCcCCCc
Confidence 3456666666665532 23456789999999998764
No 98
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=23.85 E-value=52 Score=20.77 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=10.1
Q ss_pred cCCCHHHHHhHc
Q 038532 129 KGKTPEEIRRTF 140 (164)
Q Consensus 129 ~gks~eeir~~f 140 (164)
.|+|.+||+.+|
T Consensus 58 ~G~sd~eI~~~~ 69 (84)
T 2hl7_A 58 QGKSDGEIVDYM 69 (84)
T ss_dssp HTCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 499999998874
No 99
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=23.81 E-value=60 Score=22.52 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=16.3
Q ss_pred CCCeEEEEcCCCCEEEecH
Q 038532 3 TTSTVKLRSSDNEVFEVEK 21 (164)
Q Consensus 3 ~~~~i~l~s~DG~~f~v~~ 21 (164)
++..+++.|+||+.+.|..
T Consensus 58 ~G~~~~l~s~Dg~~VtV~l 76 (142)
T 2pi2_E 58 TGKMFILSDGEGKNGTIEL 76 (142)
T ss_dssp TSSEEEEECTTSCEEEEEC
T ss_pred CCCEEEEEeCCCcEEEEEe
Confidence 4678999999999999874
No 100
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=23.79 E-value=68 Score=19.02 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=15.6
Q ss_pred CCHHHHHhHcCCCCC---CCHHHHH
Q 038532 131 KTPEEIRRTFNIKKD---FTPEEEK 152 (164)
Q Consensus 131 ks~eeir~~f~i~~d---~t~eee~ 152 (164)
+|.+|-++++||+.+ .+.++..
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~Ik 25 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKIN 25 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHHHH
Confidence 467888888999876 6665433
No 101
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=23.66 E-value=56 Score=19.49 Aligned_cols=20 Identities=5% Similarity=0.134 Sum_probs=16.9
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 038532 122 QLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 122 ~~ia~~i~gks~eeir~~f~ 141 (164)
..||..+.|+|..++|..+.
T Consensus 32 ~~Ia~~~~~Rt~~q~k~r~~ 51 (72)
T 2cu7_A 32 TKISKLIGSRTVLQVKSYAR 51 (72)
T ss_dssp HHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 66888999999999998753
No 102
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=23.30 E-value=17 Score=25.90 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=25.9
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCC
Q 038532 101 HFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDF 146 (164)
Q Consensus 101 l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~ 146 (164)
+..|+.||..||+.... +.|-..+++++.|||++++
T Consensus 139 ~~nl~LaA~~~Glgsc~----------~~~~~~~~v~~~l~lp~~~ 174 (204)
T 2b67_A 139 AMNLVLALTDQGIGSNI----------ILGFDKSKVNEVLEIEDRF 174 (204)
T ss_dssp HHHHHHHHHHTTCEEEE----------ECCBCHHHHHHHHTCCTTE
T ss_pred HHHHHHHHHHCCCceee----------EcccCHHHHHHHhCCCCCC
Confidence 35677777777776422 3456789999999999764
No 103
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc 14579} SCOP: d.90.1.1
Probab=23.18 E-value=24 Score=24.78 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=25.2
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCC
Q 038532 101 HFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDF 146 (164)
Q Consensus 101 l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~ 146 (164)
+..++.||..||+-...- .+.+...+++++.|||++++
T Consensus 133 ~~~l~LaA~~~Glgs~~~--------~~~~~~~~~~~~~l~lp~~~ 170 (200)
T 1ywq_A 133 QHTVWMLLSAEGIGASLQ--------HYNPIVDAEVKETWNIPAEW 170 (200)
T ss_dssp HHHHHHHHHHTTCEECCB--------CCTTTTHHHHHHHTTCCTTE
T ss_pred HHHHHHHHHHCCCccchh--------hcccccHHHHHHHhCCCCCc
Confidence 457778888888875410 00123468999999998764
No 104
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus} SCOP: d.90.1.1
Probab=23.11 E-value=19 Score=25.59 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=23.8
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCC
Q 038532 101 HFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDF 146 (164)
Q Consensus 101 l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~ 146 (164)
+..++.||..||+.. .++.|-..+++++.|||++++
T Consensus 140 ~~nl~LaA~~~Glgs----------~~~~~~~~~~v~~~l~lp~~~ 175 (205)
T 1nox_A 140 LGYLLLLLEAYGLGS----------VPMLGFDPERVRAILGLPSRA 175 (205)
T ss_dssp HHHHHHHHHHTTCEE----------EEECCSCHHHHHHHHTCCTTC
T ss_pred HHHHHHHHHHcCCCc----------ccccCCCHHHHHHHhCCCCCC
Confidence 445566666666543 123355789999999999764
No 105
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=22.97 E-value=43 Score=18.45 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=15.9
Q ss_pred HHHHHHhcCCCHHHHHhHc
Q 038532 122 QLAADIVKGKTPEEIRRTF 140 (164)
Q Consensus 122 ~~ia~~i~gks~eeir~~f 140 (164)
..||..+.|+|+.++|..+
T Consensus 27 ~~Ia~~~~~Rt~~qcr~Rw 45 (52)
T 1guu_A 27 KVIANYLPNRTDVQCQHRW 45 (52)
T ss_dssp HHHHHTSTTCCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHH
Confidence 5678888899999999865
No 106
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=22.89 E-value=84 Score=15.89 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=13.3
Q ss_pred hcCCCHHHHHhHcCCC
Q 038532 128 VKGKTPEEIRRTFNIK 143 (164)
Q Consensus 128 i~gks~eeir~~f~i~ 143 (164)
..|.|..+|-+.|||.
T Consensus 19 ~~g~s~~~IA~~lgis 34 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRS 34 (51)
T ss_dssp HTTCCHHHHHHHHTCC
T ss_pred HcCCCHHHHHHHHCcC
Confidence 4688999999999985
No 107
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=22.67 E-value=1.5e+02 Score=18.47 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcccccCCCCCCCCCCCCchhhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHH-HHHHHHHh
Q 038532 50 RNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRL-CQLAADIV 128 (164)
Q Consensus 50 ~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~-~~~ia~~i 128 (164)
..+.+|++|+. .|...+.. +.+.=.. ++++...|..++....-+....++... ......++
T Consensus 2 ~~i~~~~~~i~--~~~~~~~~------------~~~lA~~----~~~s~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL 63 (108)
T 3mn2_A 2 NAVRQVEEYIE--ANWMRPIT------------IEKLTAL----TGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLL 63 (108)
T ss_dssp HHHHHHHHHHH--HHTTSCCC------------HHHHHHH----HTCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcccCCCC------------HHHHHHH----HCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 46789999999 87755432 1111111 355666666666655555555554444 23333333
Q ss_pred c-C---CCHHHHHhHcCCCC
Q 038532 129 K-G---KTPEEIRRTFNIKK 144 (164)
Q Consensus 129 ~-g---ks~eeir~~f~i~~ 144 (164)
. + .|..+|-..+|..+
T Consensus 64 ~~~~~~~si~~IA~~~Gf~~ 83 (108)
T 3mn2_A 64 SDGATPTTVTAAALSCGFSN 83 (108)
T ss_dssp HSSSSCCCHHHHHHHTTCCC
T ss_pred HcCCCCCCHHHHHHHhCCCC
Confidence 3 2 25666666666543
No 108
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=22.59 E-value=2e+02 Score=19.96 Aligned_cols=41 Identities=22% Similarity=0.227 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHhHcCCCC-CCCHHHHHHHHHH
Q 038532 116 LLDRLCQLAADIVKGKTPEEIRRTFNIKK-DFTPEEEKAVMDE 157 (164)
Q Consensus 116 L~~l~~~~ia~~i~gks~eeir~~f~i~~-d~t~eee~~i~~e 157 (164)
|-..-...|+++ .=.|++|+|.++--.. -+|+|+.++|-+.
T Consensus 102 L~~~E~a~L~NL-~P~t~dEar~lipsl~~r~sdEeLe~ILd~ 143 (152)
T 2c35_A 102 LHKFELACLANL-CPETAEESKALIPSLEGRFEDEELQQILDD 143 (152)
T ss_dssp CCHHHHHHHHHH-CCSSHHHHHHHCGGGTTTSCHHHHHHHHHH
T ss_pred CCHHHHHHhccC-CCCCHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 555555666664 5679999998876544 4889988887654
No 109
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=22.51 E-value=1.2e+02 Score=18.92 Aligned_cols=39 Identities=23% Similarity=0.434 Sum_probs=20.5
Q ss_pred CCCCC-eEEEEcCCCCEEEecHHHHH-HHHHHHHHHHhcCC--CCcccce
Q 038532 1 MATTS-TVKLRSSDNEVFEVEKQVMI-QSGTIRNMIEDDAA--DGEIPVQ 46 (164)
Q Consensus 1 m~~~~-~i~l~s~DG~~f~v~~~~a~-~S~~l~~~~~~~~~--~~~I~l~ 46 (164)
|+..+ .|+|+|.| .+.+. .+.-|-+.....|. .+|||||
T Consensus 1 ~~~~kiRI~L~S~d-------~~~Ld~~~~~Iv~~ak~~g~~v~GPipLP 43 (83)
T 3r2c_J 1 MEQEKIRIKLRAYD-------HRLLDQSVKQIIETVKRTGGVVKGPIPLP 43 (83)
T ss_dssp --CCCEEEEEEESC-------HHHHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCCcEEEEEEEECC-------HHHHHHHHHHHHHHHHHhCCeeeCCcCCC
Confidence 44422 47788877 23332 34444444454443 3788887
No 110
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}
Probab=22.39 E-value=19 Score=26.01 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=24.4
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCC
Q 038532 101 HFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDF 146 (164)
Q Consensus 101 l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~ 146 (164)
+..++.||..||+... ++.|-..+++++.|||++++
T Consensus 151 ~~nl~LaA~~lGLgsc----------~~~~~~~~~v~~~L~lp~~~ 186 (218)
T 3bem_A 151 AMMFMLSAAAAGWDTC----------PMIGFDAEAVKRILNIDDQF 186 (218)
T ss_dssp HHHHHHHHHHTTCEEE----------EECCSCHHHHHHHHTCCTTE
T ss_pred HHHHHHHHHHcCCCcc----------cccCcCHHHHHHHhCCCCCc
Confidence 4456666666666542 23355789999999999764
No 111
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=22.16 E-value=57 Score=21.49 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCCHHHHHhHcC
Q 038532 121 CQLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 121 ~~~ia~~i~gks~eeir~~f~ 141 (164)
+..+|+.|+|+++++-..++.
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~ 37 (110)
T 3r8s_S 17 VRLVADLIRGKKVSQALDILT 37 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHh
Confidence 356899999999998877766
No 112
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=22.02 E-value=43 Score=20.56 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=14.3
Q ss_pred CCCCCeEEEEcCCCCEEEec
Q 038532 1 MATTSTVKLRSSDNEVFEVE 20 (164)
Q Consensus 1 m~~~~~i~l~s~DG~~f~v~ 20 (164)
|+....++++|.|| .+.|.
T Consensus 1 ~~~~m~lRvrs~~G-~~Ri~ 19 (80)
T 2pjh_A 1 MAESIIIRVQSPDG-VKRIT 19 (80)
T ss_dssp -CCCCCCEEECSSE-EEECC
T ss_pred CCCcEEEEEECCCC-CEEEE
Confidence 67767899999999 55665
No 113
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=21.72 E-value=1.1e+02 Score=17.94 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=17.6
Q ss_pred CCCHHHHHhHcCCCC-CCCHHHHH
Q 038532 130 GKTPEEIRRTFNIKK-DFTPEEEK 152 (164)
Q Consensus 130 gks~eeir~~f~i~~-d~t~eee~ 152 (164)
+++.++-.+.|||+. +.|.++..
T Consensus 10 ~m~~~~~y~iLgl~~~~a~~~eIk 33 (71)
T 2guz_A 10 KMNSKEALQILNLTENTLTKKKLK 33 (71)
T ss_dssp SCCHHHHHHHTTCCTTTCCHHHHH
T ss_pred CCCHHHHHHHcCCCCCCCCHHHHH
Confidence 467888899999987 68876544
No 114
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=21.61 E-value=1.6e+02 Score=18.38 Aligned_cols=78 Identities=9% Similarity=0.012 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcccccCCCCCCCCCCCCchhhhhHHHHHHHhhhhhcCcHHHHHHHHHhhhcCCChhHHHHH-HHHHHHH
Q 038532 49 SRNLAKIVEWCKCMQHRDRNNNNNDNNKEEEEEEEEEWEKKFDEEVSEDKDLHFGLLLAANYLEIPALLDRL-CQLAADI 127 (164)
Q Consensus 49 s~~L~~Ii~~~~~~~h~~~~~~~~~~~~~~~~~~~~~wd~~F~~~l~~~~~~l~~Ll~AA~~L~I~~L~~l~-~~~ia~~ 127 (164)
...+.+|++|+. .|...+.. +.+.= +- ++++...|..++....=+....++... ......+
T Consensus 4 ~~~i~~~~~~i~--~~~~~~~~------------~~~lA-~~---~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~l 65 (108)
T 3oou_A 4 SPIIQNVLSYIT--EHFSEGMS------------LKTLG-ND---FHINAVYLGQLFQKEMGEHFTDYLNRYRVNYAKEE 65 (108)
T ss_dssp CCHHHHHHHHHH--HHTTSCCC------------HHHHH-HH---HTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--HHhcCCCC------------HHHHH-HH---HCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 346788999999 87655432 11111 11 456666666666666555555554444 2333333
Q ss_pred h--cCCCHHHHHhHcCCCC
Q 038532 128 V--KGKTPEEIRRTFNIKK 144 (164)
Q Consensus 128 i--~gks~eeir~~f~i~~ 144 (164)
+ .+.|..+|-..+|..+
T Consensus 66 L~~~~~si~~IA~~~Gf~~ 84 (108)
T 3oou_A 66 LLQTKDNLTIIAGKSGYTD 84 (108)
T ss_dssp HHHCCCCHHHHHHHTTCCC
T ss_pred HHcCCCCHHHHHHHcCCCC
Confidence 3 2567777777777654
No 115
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=21.04 E-value=1.1e+02 Score=16.40 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=15.0
Q ss_pred HHHHHHhcCCCHHH-------HHhHcCCCC
Q 038532 122 QLAADIVKGKTPEE-------IRRTFNIKK 144 (164)
Q Consensus 122 ~~ia~~i~gks~ee-------ir~~f~i~~ 144 (164)
..+.+.|++.|.-| +.+.|||+.
T Consensus 4 ~~iie~i~~lTvlE~~eLvk~leekfGVsa 33 (40)
T 1dd4_C 4 DEIIEAIEKLTVSELAELVKKLEDKFGVTA 33 (40)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHCCCc
Confidence 35667778887444 556688864
No 116
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=20.82 E-value=92 Score=21.03 Aligned_cols=26 Identities=15% Similarity=0.402 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHhHcCCCC
Q 038532 116 LLDRLCQLAADIVKGKTPEEIRRTFNIKK 144 (164)
Q Consensus 116 L~~l~~~~ia~~i~gks~eeir~~f~i~~ 144 (164)
+.+..|..+| .|.|..+|.+.+|||.
T Consensus 17 ~~e~I~~~i~---~G~sl~~i~~~~~~ps 42 (140)
T 4dyq_A 17 VADDICSLLS---SGESLLKVCKRPGMPD 42 (140)
T ss_dssp HHHHHHHHHH---TTCCHHHHHTSTTCCC
T ss_pred HHHHHHHHHH---CCCcHHHHHhcCCCCC
Confidence 4445555554 5899999998888864
No 117
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=20.79 E-value=94 Score=23.11 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHhHcCCCCC-CCHHHHHHH
Q 038532 115 ALLDRLCQLAADIVKGKTPEEIRRTFNIKKD-FTPEEEKAV 154 (164)
Q Consensus 115 ~L~~l~~~~ia~~i~gks~eeir~~f~i~~d-~t~eee~~i 154 (164)
.|+-.+|-.+|.++.+..|-.++.+..+.++ ||.++..+.
T Consensus 95 qLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~m 135 (254)
T 2f2c_A 95 QKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQ 135 (254)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHH
Confidence 5777789999999987644455666666654 888765443
No 118
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=20.72 E-value=61 Score=18.43 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=16.9
Q ss_pred HHHHHHhcCCCHHHHHhHcC
Q 038532 122 QLAADIVKGKTPEEIRRTFN 141 (164)
Q Consensus 122 ~~ia~~i~gks~eeir~~f~ 141 (164)
..||..+.|+|..++|..+.
T Consensus 32 ~~Ia~~~~~Rt~~qcr~Rw~ 51 (60)
T 2d9a_A 32 KFLASHFPNRTDQQCQYRWL 51 (60)
T ss_dssp HHHHHHCSSSCHHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHH
Confidence 66888899999999998764
No 119
>3of4_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina loihiensis} SCOP: d.90.1.0
Probab=20.71 E-value=12 Score=27.19 Aligned_cols=36 Identities=22% Similarity=0.260 Sum_probs=25.3
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCC-CC
Q 038532 101 HFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKK-DF 146 (164)
Q Consensus 101 l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~-d~ 146 (164)
+..|+.||..+|+.. .++.|-..+++++.|||++ ++
T Consensus 139 ~~nl~LaA~~~Glgs----------c~i~g~~~~~v~~~L~lp~~~~ 175 (209)
T 3of4_A 139 LGTFLLAAAELEVDS----------CPMEGIEHDAYDNILSLKDLGL 175 (209)
T ss_dssp HHHHHHHHHHTTCEE----------CCBCCSCHHHHHHHTTHHHHTE
T ss_pred HHHHHHHHHHcCCCe----------eeecccCHHHHHHHhCCCCCCc
Confidence 455666666666654 2345678999999999986 53
No 120
>2isk_A BLUB; oxidoreductase, flavin, monooxygenase, flavin destructase, vitamin B12, dithionite, charge transfer complex, flavoprotein; HET: FNR; 2.10A {Sinorhizobium meliloti} PDB: 2isj_A* 2isl_A*
Probab=20.26 E-value=16 Score=26.70 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=25.6
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHHHhcCCCHHHHHhHcCCCCCC
Q 038532 100 LHFGLLLAANYLEIPALLDRLCQLAADIVKGKTPEEIRRTFNIKKDF 146 (164)
Q Consensus 100 ~l~~Ll~AA~~L~I~~L~~l~~~~ia~~i~gks~eeir~~f~i~~d~ 146 (164)
.+..|+.||..||+.. .++.+-..+++++.|||++++
T Consensus 151 a~~nl~LaA~~lGlgs----------~~~~~~~~~~v~~~L~lp~~~ 187 (230)
T 2isk_A 151 AVQNLWLAARAEGVGV----------GWVSIFHESEIKAILGIPDHV 187 (230)
T ss_dssp HHHHHHHHHHHHTEEE----------EECCCSCHHHHHHHHTCCTTE
T ss_pred HHHHHHHHHHHCCCce----------eeecccCHHHHHHHhCCCCCc
Confidence 3456777777777654 223356789999999998763
Done!