BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038533
(337 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 20/222 (9%)
Query: 134 WNEIEPKRIGTCSIDTTCTIWDI-----EKGVVETQLI--AHDKEVYDICWG--EARVFA 184
WN + + S D T +WDI E VV+ + I H V D+ W +F
Sbjct: 185 WNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFG 244
Query: 185 SVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI 244
SV+ D + I+D R S + + L++N +AT D V + D+
Sbjct: 245 SVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDL 303
Query: 245 RSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWEL-----PLPPVAGPNGI 299
R+ L + E H+ + + W+P + + S G D + +W+L P +G
Sbjct: 304 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGP 363
Query: 300 DPMSMYSAG--SEINQLQWSPAQPDWL--AIAFSNKMQLLKV 337
+ G ++I+ W+P +P W+ +++ N MQ+ ++
Sbjct: 364 PELLFIHGGHTAKISDFSWNPNEP-WVICSVSEDNIMQVWQM 404
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 20/225 (8%)
Query: 131 SFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI-------AHDKEVYDICWG--EAR 181
WN + + S D T +WDI G E +++ H V D+ W
Sbjct: 184 GLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHES 243
Query: 182 VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI 241
+F SV+ D + I+D R S + + L++N +AT D V +
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKT-VAL 302
Query: 242 LDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL--PPVAGPNGI 299
D+R+ L + E H+ + + W+P + + S G D + +W+L + +
Sbjct: 303 WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAE 362
Query: 300 D--PMSMYSAG---SEINQLQWSPAQPDWLAIAFS--NKMQLLKV 337
D P ++ G ++I+ W+P +P W+ + S N MQ+ ++
Sbjct: 363 DGPPELLFIHGGHTAKISDFSWNPNEP-WVICSVSEDNIMQIWQM 406
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 22/216 (10%)
Query: 92 HLLASSGDF-LRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTT 150
HLL++S D + LWD+ E V + + A + W+ + G+ + D
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 151 CTIWDIEKGVVE--TQLI-AHDKEVYDICWGEARVF--ASVSADGSVRIFDLRDKEHSTI 205
IWD + L+ AH EV + + F A+ SAD +V ++DLR+ +
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 206 IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR-------------SPTLPVA 252
+ES + + + ++ W+ + +A+ D ++ + D+ P +
Sbjct: 314 TFESHKDE--IFQVHWSPHNETILASSGTD-RRLNVWDLSKIGEEQSAEDAEDGPPELLF 370
Query: 253 ELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWEL 288
H A ++ +W P ICSV +D+ IW++
Sbjct: 371 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 10/164 (6%)
Query: 134 WNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI-------AHDKEVYDICWG--EARVFA 184
WN + + S D T +WDI G E +++ H V D+ W +F
Sbjct: 187 WNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFG 246
Query: 185 SVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI 244
SV+ D + I+D R S + + L++N +AT D V + D+
Sbjct: 247 SVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDL 305
Query: 245 RSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWEL 288
R+ L + E H+ + + W+P + + S G D + +W+L
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 22/215 (10%)
Query: 92 HLLASSGDF-LRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTT 150
HLL++S D + LWD+ E V + + A + W+ + G+ + D
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 151 CTIWDIEKGVVE--TQLI-AHDKEVYDICWGEARVF--ASVSADGSVRIFDLRDKEHSTI 205
IWD + L+ AH EV + + F A+ SAD +V ++DLR+ +
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 206 IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR-------------SPTLPVA 252
+ES + + + ++ W+ + +A+ D ++ + D+ P +
Sbjct: 314 TFESHKDE--IFQVHWSPHNETILASSGTD-RRLNVWDLSKIGEEQSAEDAEDGPPELLF 370
Query: 253 ELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWE 287
H A ++ +W P ICSV +D+ IW+
Sbjct: 371 IHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 107/247 (43%), Gaps = 32/247 (12%)
Query: 107 GDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKG------- 159
+++I +A +N SS + + +N + + + + IWD+ K
Sbjct: 99 ANNAINSMARFSNHSSS-----VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY 153
Query: 160 --VVETQLIAHDKEVYDICWGE--ARVFASVSADGSVRIFDLR-DKEHSTIIYESPQPDT 214
+ Q ++ EV + W + A VFAS + I+DL+ KE + Y SP
Sbjct: 154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGI 213
Query: 215 P--LLRLAWNKQDLRYMATILMDSN--KVVILDIRSPTLPVAELER-HRACVNAIAWAPQ 269
L + W+ ++ +AT N ++I D+R+ P+ L + H+ + ++ W Q
Sbjct: 214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ 273
Query: 270 SRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSA-GSEINQLQWSPAQPDWLAIA- 327
+ S G D+ +W P + +S + A G+ + +++P PD A A
Sbjct: 274 DEHLLLSSGRDNTVLLWN--------PESAEQLSQFPARGNWCFKTKFAPEAPDLFACAS 325
Query: 328 FSNKMQL 334
F NK+++
Sbjct: 326 FDNKIEV 332
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 28/226 (12%)
Query: 134 WNEIEPKRIGTCSIDTTCTIWDI-----EKGVVETQLI--AHDKEVYDICWG--EARVFA 184
WN + + S D T +WDI E V++ + I H V D+ W +F
Sbjct: 193 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 252
Query: 185 SVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI 244
SV+ D + I+D R+ S + + L++N +AT D V + D+
Sbjct: 253 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDL 311
Query: 245 RSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL--------PPVAGP 296
R+ L + E H+ + + W+P + + S G D + +W+L GP
Sbjct: 312 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 371
Query: 297 NGIDPMSMYSAG---SEINQLQWSPAQPDWL--AIAFSNKMQLLKV 337
P ++ G ++I+ W+P +P W+ +++ N MQ+ ++
Sbjct: 372 ----PELLFIHGGHTAKISDFSWNPNEP-WIICSVSEDNIMQVWQM 412
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 91/216 (42%), Gaps = 22/216 (10%)
Query: 92 HLLASSGDF-LRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTT 150
+LL++S D + LWD+ + E + + + A + W+ + G+ + D
Sbjct: 200 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 259
Query: 151 CTIWDIEKGVVET---QLIAHDKEVYDICWGEARVF--ASVSADGSVRIFDLRDKEHSTI 205
IWD + AH EV + + F A+ SAD +V ++DLR+ +
Sbjct: 260 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 319
Query: 206 IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR-------------SPTLPVA 252
+ES + + + ++ W+ + +A+ D ++ + D+ P +
Sbjct: 320 SFESHKDE--IFQVQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPELLF 376
Query: 253 ELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWEL 288
H A ++ +W P ICSV +D+ +W++
Sbjct: 377 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 28/226 (12%)
Query: 134 WNEIEPKRIGTCSIDTTCTIWDI-----EKGVVETQLI--AHDKEVYDICWG--EARVFA 184
WN + + S D T +WDI E V++ + I H V D+ W +F
Sbjct: 189 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 248
Query: 185 SVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI 244
SV+ D + I+D R+ S + + L++N +AT D V + D+
Sbjct: 249 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDL 307
Query: 245 RSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL--------PPVAGP 296
R+ L + E H+ + + W+P + + S G D + +W+L GP
Sbjct: 308 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 367
Query: 297 NGIDPMSMYSAG---SEINQLQWSPAQPDWL--AIAFSNKMQLLKV 337
P ++ G ++I+ W+P +P W+ +++ N MQ+ ++
Sbjct: 368 ----PELLFIHGGHTAKISDFSWNPNEP-WIICSVSEDNIMQVWQM 408
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 91/216 (42%), Gaps = 22/216 (10%)
Query: 92 HLLASSGDF-LRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTT 150
+LL++S D + LWD+ + E + + + A + W+ + G+ + D
Sbjct: 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255
Query: 151 CTIWDIEKGVVET---QLIAHDKEVYDICWGEARVF--ASVSADGSVRIFDLRDKEHSTI 205
IWD + AH EV + + F A+ SAD +V ++DLR+ +
Sbjct: 256 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 315
Query: 206 IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR-------------SPTLPVA 252
+ES + + + ++ W+ + +A+ D ++ + D+ P +
Sbjct: 316 SFESHKDE--IFQVQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPELLF 372
Query: 253 ELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWEL 288
H A ++ +W P ICSV +D+ +W++
Sbjct: 373 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 28/226 (12%)
Query: 134 WNEIEPKRIGTCSIDTTCTIWDI-----EKGVVETQLI--AHDKEVYDICWG--EARVFA 184
WN + + S D T +WDI E V++ + I H V D+ W +F
Sbjct: 191 WNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFG 250
Query: 185 SVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI 244
SV+ D + I+D R+ S + + L++N +AT D V + D+
Sbjct: 251 SVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALWDL 309
Query: 245 RSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL--------PPVAGP 296
R+ L + E H+ + + W+P + + S G D + +W+L GP
Sbjct: 310 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 369
Query: 297 NGIDPMSMYSAG---SEINQLQWSPAQPDWL--AIAFSNKMQLLKV 337
P ++ G ++I+ W+P +P W+ +++ N MQ+ ++
Sbjct: 370 ----PELLFIHGGHTAKISDFSWNPNEP-WIICSVSEDNIMQVWQM 410
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 91/216 (42%), Gaps = 22/216 (10%)
Query: 92 HLLASSGDF-LRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTT 150
+LL++S D + LWD+ + E + + + A + W+ + G+ + D
Sbjct: 198 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 257
Query: 151 CTIWDIEKGVVET---QLIAHDKEVYDICWGEARVF--ASVSADGSVRIFDLRDKEHSTI 205
IWD + AH EV + + F A+ SAD +V ++DLR+ +
Sbjct: 258 LMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 317
Query: 206 IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR-------------SPTLPVA 252
+ES + + + ++ W+ + +A+ D ++ + D+ P +
Sbjct: 318 SFESHKDE--IFQVQWSPHNETILASSGTD-RRLHVWDLSKIGEEQSTEDAEDGPPELLF 374
Query: 253 ELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWEL 288
H A ++ +W P ICSV +D+ +W++
Sbjct: 375 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 90/204 (44%), Gaps = 23/204 (11%)
Query: 144 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEH 202
+ S D T +WD+ G + + H EVY + + + R S A+ ++++++ +
Sbjct: 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK 152
Query: 203 STIIYESPQPD-------TPLLRLAWNKQDLR-YMATILMDSNKVVILDIRSPTLPVA-E 253
+ + D +P+++ A Q Y A++ D L + + +
Sbjct: 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR----LKVWNTNFQIRYT 208
Query: 254 LERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQ 313
+ H + VN ++ +P ++I + G D + IW++ N P + AGS INQ
Sbjct: 209 FKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDI-------LNLTYPQREFDAGSTINQ 260
Query: 314 LQWSPAQPDWLAIAFSNKMQLLKV 337
+ ++P + W+A+ +++ +
Sbjct: 261 IAFNP-KLQWVAVGTDQGVKIFNL 283
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 16/168 (9%)
Query: 153 IWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQP 212
I+D+E + H V + W V +S S G++ D+R H +
Sbjct: 160 IYDVESQTKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS 218
Query: 213 DTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRR 272
+ + LAW L+ + + N V I D RS ++P H A V A+AW P
Sbjct: 219 E--VCGLAWRSDGLQLASG--GNDNVVQIWDARS-SIPKFTKTNHNAAVKAVAWCPWQSN 273
Query: 273 HICSVGD--DSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSP 318
+ + G D Q W A N +D AGS++ L WSP
Sbjct: 274 LLATGGGTMDKQIHFWNAATG--ARVNTVD------AGSQVTSLIWSP 313
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 17/121 (14%)
Query: 93 LLASSG--DFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPK-RIGTCSIDT 149
LLASS D +R+W D E VAVLN + + + S D+++ E R+ + S D+
Sbjct: 167 LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT-----VWSSDFDKTEGVFRLCSGSDDS 221
Query: 150 TCTIW--------DIEKGVVETQL-IAHDKEVYDICWGEARVFASVSADGSVRIFDLRDK 200
T +W D ++ V E L H ++VY++ WG + ASV ADG + +++ D
Sbjct: 222 TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDG 281
Query: 201 E 201
E
Sbjct: 282 E 282
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 140 KRIGTCSIDTTCTIWDIE---KGVVETQLIAHDKEVYDICWGEAR---VFASVSADGSVR 193
KR+ TCS D T I+++E +++T L H+ V+ + W + + AS S DG V
Sbjct: 22 KRMATCSSDKTIKIFEVEGETHKLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 194 IFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR--SPTLPV 251
I+ + S I + + + W + M + KV +++ + T P+
Sbjct: 81 IWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPI 139
Query: 252 AELERHRACVNAIAWAP------------QSRRHICSVGDDSQAFIWE 287
++ H VN+ +WAP + R + G D+ IW+
Sbjct: 140 I-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 92/231 (39%), Gaps = 39/231 (16%)
Query: 95 ASSGDFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDW-NEIEPKRIGTCSIDTTCTI 153
ASSGD L+L L + E+ ++S W E +GT S + +
Sbjct: 52 ASSGDILQL-------------LQMEQPGEY---ISSVAWIKEGNYLAVGTSSAEVQ--L 93
Query: 154 WDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPD 213
WD+++ + +H V + W + + +S S G + D+R EH +
Sbjct: 94 WDVQQQKRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 152
Query: 214 TPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT----LPVAELERHRACVNAIAWAPQ 269
LR A D R++A+ ++ +V + +P +P+ +H+ V A+AW P
Sbjct: 153 VCGLRWA---PDGRHLAS--GGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207
Query: 270 SRRHICSVGD--DSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSP 318
+ + G D IW + +S A S++ + WSP
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSGAC--------LSAVDAHSQVCSILWSP 250
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 92/231 (39%), Gaps = 39/231 (16%)
Query: 95 ASSGDFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDW-NEIEPKRIGTCSIDTTCTI 153
ASSGD L+L L + E+ ++S W E +GT S + +
Sbjct: 143 ASSGDILQL-------------LQMEQPGEY---ISSVAWIKEGNYLAVGTSSAEVQ--L 184
Query: 154 WDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPD 213
WD+++ + +H V + W + + +S S G + D+R EH +
Sbjct: 185 WDVQQQKRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 243
Query: 214 TPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT----LPVAELERHRACVNAIAWAPQ 269
LR A D R++A+ D+ +V + +P +P+ +H+ V A+AW P
Sbjct: 244 VCGLRWA---PDGRHLASGGNDN--LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 298
Query: 270 SRRHICSVGD--DSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSP 318
+ + G D IW + +S A S++ + WSP
Sbjct: 299 QSNVLATGGGTSDRHIRIWNVCSGAC--------LSAVDAHSQVCSILWSP 341
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 140 KRIGTCSIDTTCTIWDIE---KGVVETQLIAHDKEVYDICWGEAR---VFASVSADGSVR 193
KR+ TCS D T I+++E +++T L H+ V+ + W + + AS S DG V
Sbjct: 24 KRLATCSSDKTIKIFEVEGETHKLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 194 IFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR--SPTLPV 251
I+ + S I + + + W + + + KV +++ + T P+
Sbjct: 83 IWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 141
Query: 252 AELERHRACVNAIAWAP------------QSRRHICSVGDDSQAFIWE 287
++ H VN+ +WAP + R + G D+ IW+
Sbjct: 142 I-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 188
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 92/231 (39%), Gaps = 39/231 (16%)
Query: 95 ASSGDFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDW-NEIEPKRIGTCSIDTTCTI 153
ASSGD L+L L + E+ ++S W E +GT S + +
Sbjct: 132 ASSGDILQL-------------LQMEQPGEY---ISSVAWIKEGNYLAVGTSSAEVQ--L 173
Query: 154 WDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPD 213
WD+++ + +H V + W + + +S S G + D+R EH +
Sbjct: 174 WDVQQQKRLRNMTSHSARVGSLSW-NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE 232
Query: 214 TPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT----LPVAELERHRACVNAIAWAPQ 269
LR A D R++A+ D+ +V + +P +P+ +H+ V A+AW P
Sbjct: 233 VCGLRWA---PDGRHLASGGNDN--LVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287
Query: 270 SRRHICSVGD--DSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSP 318
+ + G D IW + +S A S++ + WSP
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGAC--------LSAVDAHSQVCSILWSP 330
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 140 KRIGTCSIDTTCTIWDIE---KGVVETQLIAHDKEVYDICWGEAR---VFASVSADGSVR 193
KR+ TCS D T I+++E +++T L H+ V+ + W + + AS S DG V
Sbjct: 22 KRLATCSSDKTIKIFEVEGETHKLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 194 IFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR--SPTLPV 251
I+ + S I + + + W + + + KV +++ + T P+
Sbjct: 81 IWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139
Query: 252 AELERHRACVNAIAWAP------------QSRRHICSVGDDSQAFIWE 287
++ H VN+ +WAP + R + G D+ IW+
Sbjct: 140 I-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 72/168 (42%), Gaps = 23/168 (13%)
Query: 140 KRIGTCSIDTTCTIWDIE---KGVVETQLIAHDKEVYDICWGEAR---VFASVSADGSVR 193
KR+ TCS D T I+++E +++T L H+ V+ + W + + AS S DG V
Sbjct: 22 KRLATCSSDKTIKIFEVEGETHKLIDT-LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 194 IFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR--SPTLPV 251
I+ + S I + + + W + + + KV +++ + T P+
Sbjct: 81 IWKEENGRWSQIAVHAVHS-ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI 139
Query: 252 AELERHRACVNAIAWAP------------QSRRHICSVGDDSQAFIWE 287
++ H VN+ +WAP + R + G D+ IW+
Sbjct: 140 I-IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 143 GTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLR-DK 200
G C D + +WD+ +G+ H+ ++ IC+ FA+ S D + R+FDLR D+
Sbjct: 202 GAC--DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 201 EHSTIIYES 209
E T +++
Sbjct: 260 ELMTYSHDN 268
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 137 IEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIF 195
++ +I T S DTTC +WDIE G T H +V + + R+F S + D S +++
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 196 DLRD 199
D+R+
Sbjct: 212 DVRE 215
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 143 GTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLR-DK 200
G C D + +WD+ +G+ H+ ++ IC+ FA+ S D + R+FDLR D+
Sbjct: 202 GAC--DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 201 EHSTIIYES 209
E T +++
Sbjct: 260 ELMTYSHDN 268
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 137 IEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIF 195
++ +I T S DTTC +WDIE G T H +V + + R+F S + D S +++
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 196 DLRD 199
D+R+
Sbjct: 212 DVRE 215
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 143 GTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLR-DK 200
G C D + +WD+ +G+ H+ ++ IC+ FA+ S D + R+FDLR D+
Sbjct: 213 GAC--DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 270
Query: 201 EHSTIIYES 209
E T +++
Sbjct: 271 ELMTYSHDN 279
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 137 IEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIF 195
++ +I T S DTTC +WDIE G T H +V + + R+F S + D S +++
Sbjct: 163 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 222
Query: 196 DLRD 199
D+R+
Sbjct: 223 DVRE 226
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 143 GTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLR-DK 200
G C D + +WD+ +G+ H+ ++ IC+ FA+ S D + R+FDLR D+
Sbjct: 202 GAC--DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 201 EHSTIIYES 209
E T +++
Sbjct: 260 ELMTYSHDN 268
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 137 IEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIF 195
++ +I T S DTTC +WDIE G T H +V + + R+F S + D S +++
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 196 DLRD 199
D+R+
Sbjct: 212 DVRE 215
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 143 GTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLR-DK 200
G C D + +WD+ +G+ H+ ++ IC+ FA+ S D + R+FDLR D+
Sbjct: 202 GAC--DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259
Query: 201 EHSTIIYES 209
E T +++
Sbjct: 260 ELMTYSHDN 268
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 137 IEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIF 195
++ +I T S DTTC +WDIE G T H +V + + R+F S + D S +++
Sbjct: 152 LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Query: 196 DLRD 199
D+R+
Sbjct: 212 DVRE 215
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 92/208 (44%), Gaps = 40/208 (19%)
Query: 144 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEH 202
+ S D + +W+++ G + + + H K+V + + + R S D ++R+++++ +
Sbjct: 84 SASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECM 143
Query: 203 STI-----------IYESPQPDTP-LLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLP 250
T+ + SP D P ++ W+ N V + D+ + L
Sbjct: 144 HTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWD--------------NLVKVWDLATGRL- 188
Query: 251 VAELERHRACVNAIAWAPQSRRHICSVGD-DSQAFIWELPLPPVAGPNGIDPMSMYSAGS 309
V +L+ H V ++ +P +C+ D D A +W+L + +S +AG+
Sbjct: 189 VTDLKGHTNYVTSVTVSPDGS--LCASSDKDGVARLWDLTKG--------EALSEMAAGA 238
Query: 310 EINQLQWSPAQPDWLAIAFSNKMQLLKV 337
INQ+ +SP + W+ A +++ +
Sbjct: 239 PINQICFSPNRY-WMCAATEKGIRIFDL 265
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 148 DTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKE 201
D +WD+ KG +++ A + IC+ R + + + +RIFDL +K+
Sbjct: 217 DGVARLWDLTKGEALSEMAA-GAPINQICFSPNRYWMCAATEKGIRIFDLENKD 269
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 86/206 (41%), Gaps = 16/206 (7%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 81 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 132
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G+ L AH V + + + + S S DG RI+D + + +
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERH-RACVNAIAWA 267
P ++ + N +Y+ +D++ + + L ++ + C+ A ++
Sbjct: 193 DDNPPVSFVKFSPNG---KYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA-NFS 248
Query: 268 PQSRRHICSVGDDSQAFIWELPLPPV 293
+ I S +D+ +IW L +
Sbjct: 249 VTGGKWIVSGSEDNMVYIWNLQTKEI 274
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 101 KCLKTLKGHSNYVF 114
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 18/207 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 81 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 132
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G+ L AH V + + + + S S DG RI+D + + +
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 193 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 247
Query: 267 APQSRRHICSVGDDSQAFIWELPLPPV 293
+ + I S +D+ +IW L +
Sbjct: 248 SVTGGKWIVSGSEDNMVYIWNLQTKEI 274
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 101 KCLKTLKGHSNYVF 114
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 17/134 (12%)
Query: 138 EPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDL 197
E KR + S+DTT IWD+E G + L H V + + S +ADGS+R +D
Sbjct: 321 ERKRCISASMDTTIRIWDLENGELMYTLQGHTALV-GLLRLSDKFLVSAAADGSIRGWDA 379
Query: 198 RDKEHS-----------TIIYESPQPDTPLLRLAWNKQDLR----YMATILMDSNKVVIL 242
D T Y S +N +LR A IL D++++ +
Sbjct: 380 NDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSV 439
Query: 243 DIRSPTLPVAELER 256
+ + TL VA +E+
Sbjct: 440 NFKGKTL-VAAVEK 452
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Query: 96 SSGDFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWN--------EIEPKRIGTCSI 147
S D LRL S +E + +L N + +F T+ + + E + T +
Sbjct: 86 SQQDRLRL-----SFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGAD 140
Query: 148 DTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIY 207
D ++D QL HD V+ + + + S S D +VR++D++ K T ++
Sbjct: 141 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK-KGCCTHVF 199
Query: 208 ESPQPDTPLLRLAWNKQDLRYMAT 231
E L + ++++Y+ T
Sbjct: 200 EGHNSTVRCLDIV-EYKNIKYIVT 222
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 146 SIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHST 204
S D T +WD+ + L H +Y + E + S S D ++RI+DL + E
Sbjct: 287 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE--- 343
Query: 205 IIYESPQPDTPLLRL 219
++Y + Q T L+ L
Sbjct: 344 LMY-TLQGHTALVGL 357
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 37/229 (16%)
Query: 3 NSSQESHLRSENSVTHESPYPLY---------AMAVCGQRIAVGSF-----IEDYTNRVD 48
++SQ+ L N++T + + + A A GQ +A G I + +++ D
Sbjct: 83 SASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD 142
Query: 49 VVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPXXXXXXXXXXXHLLASSGD-FLRLWDVG 107
P S + H + Y P + L+ SGD LWDV
Sbjct: 143 RDGNMPVSRVLTGHKGYASSCQYVPDQ--------------ETRLITGSGDQTCVLWDV- 187
Query: 108 DSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWD--IEKGVVETQL 165
++ + +++ + S A + S N + + S DTT +WD I V T
Sbjct: 188 -TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT-Y 245
Query: 166 IAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPD 213
H+ ++ + + + + F + S DG+ R+FD+R H +Y + +PD
Sbjct: 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR-TGHQLQVY-NREPD 292
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 17/134 (12%)
Query: 138 EPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDL 197
E KR + S DTT IWD+E G + L H V + + S +ADGS+R +D
Sbjct: 321 ERKRCISASXDTTIRIWDLENGELXYTLQGHTALV-GLLRLSDKFLVSAAADGSIRGWDA 379
Query: 198 RDKEHS-----------TIIYESPQPDTPLLRLAWNKQDLR----YMATILMDSNKVVIL 242
D T Y S +N +LR A IL D++++ +
Sbjct: 380 NDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSV 439
Query: 243 DIRSPTLPVAELER 256
+ + TL VA +E+
Sbjct: 440 NFKGKTL-VAAVEK 452
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 61/144 (42%), Gaps = 15/144 (10%)
Query: 96 SSGDFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWN--------EIEPKRIGTCSI 147
S D LRL S +E + +L N + +F T+ + + E + T +
Sbjct: 86 SQQDRLRL-----SFLENIFILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGAD 140
Query: 148 DTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIY 207
D ++D QL HD V+ + + + S S D +VR++D++ K T ++
Sbjct: 141 DKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK-KGCCTHVF 199
Query: 208 ESPQPDTPLLRLAWNKQDLRYMAT 231
E L + ++++Y+ T
Sbjct: 200 EGHNSTVRCLDIV-EYKNIKYIVT 222
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 146 SIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHST 204
S D T +WD+ + L H +Y + E + S S D ++RI+DL + E
Sbjct: 287 SYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXY 346
Query: 205 IIYESPQPDTPLLRLA 220
+ + LLRL+
Sbjct: 347 TL-QGHTALVGLLRLS 361
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 40/196 (20%)
Query: 146 SIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFD-------- 196
S D T +WD+ G + + H K+V + + + R S S D ++++++
Sbjct: 105 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT 164
Query: 197 LRDKEHS---TIIYESPQPDTPLL-RLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVA 252
++D+ HS + + SP P++ W+K V + ++ + L
Sbjct: 165 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL--------------VKVWNLANCKLKTN 210
Query: 253 ELERHRACVNAIAWAPQSRRHIC-SVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEI 311
+ H +N + +P +C S G D QA +W+L N + G I
Sbjct: 211 HIG-HTGYLNTVTVSPDGS--LCASGGKDGQAMLWDL--------NEGKHLYTLDGGDII 259
Query: 312 NQLQWSPAQPDWLAIA 327
N L +SP + WL A
Sbjct: 260 NALCFSPNRY-WLCAA 274
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 18/202 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 84 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 135
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G L AH V + + + + S S DG RI+D + + +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 196 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 250
Query: 267 APQSRRHICSVGDDSQAFIWEL 288
+ + I S +D+ +IW L
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNL 272
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 104 KCLKTLKGHSNYVF 117
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 93 LLASSGDFL-RLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTC 151
+++SS D L R+WD + +++ P SF K I ++D T
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDN-------PPVSFVKFSPNGKYILAATLDNTL 222
Query: 152 TIWDIEKGVVETQLIAHDKEVY----DICWGEARVFASVSADGSVRIFDLRDKE 201
+WD KG H E Y + + S S D V I++L+ KE
Sbjct: 223 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 215 PLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT-LPVAELERHRACVNAIAWAPQSRRH 273
P+ AWNK R I ++++V I + + V EL+ H V I WAP S R
Sbjct: 10 PISCHAWNKD--RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNR- 66
Query: 274 ICSVGDDSQAFIWEL 288
I + G D A++W L
Sbjct: 67 IVTCGTDRNAYVWTL 81
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 40/196 (20%)
Query: 146 SIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFD-------- 196
S D T +WD+ G + + H K+V + + + R S S D ++++++
Sbjct: 82 SWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT 141
Query: 197 LRDKEHS---TIIYESPQPDTPLL-RLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVA 252
++D+ HS + + SP P++ W+K V + ++ + L
Sbjct: 142 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL--------------VKVWNLANCKLKTN 187
Query: 253 ELERHRACVNAIAWAPQSRRHIC-SVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEI 311
+ H +N + +P +C S G D QA +W+L N + G I
Sbjct: 188 HIG-HTGYLNTVTVSPDGS--LCASGGKDGQAMLWDL--------NEGKHLYTLDGGDII 236
Query: 312 NQLQWSPAQPDWLAIA 327
N L +SP + WL A
Sbjct: 237 NALCFSPNRY-WLCAA 251
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 18/207 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 95 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 146
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G L AH V + + + + S S DG RI+D + + +
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 206
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 207 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 261
Query: 267 APQSRRHICSVGDDSQAFIWELPLPPV 293
+ + I S +D+ +IW L +
Sbjct: 262 SVTGGKWIVSGSEDNLVYIWNLQTKEI 288
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 55 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 114
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 115 KCLKTLKGHSNYVF 128
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 18/207 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 81 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 132
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G L AH V + + + + S S DG RI+D + + +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 193 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 247
Query: 267 APQSRRHICSVGDDSQAFIWELPLPPV 293
+ + I S +D+ +IW L +
Sbjct: 248 SVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 101 KCLKTLKGHSNYVF 114
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 18/207 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 79 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 130
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G L AH V + + + + S S DG RI+D + + +
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 190
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 191 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 245
Query: 267 APQSRRHICSVGDDSQAFIWELPLPPV 293
+ + I S +D+ +IW L +
Sbjct: 246 SVTGGKWIVSGSEDNLVYIWNLQTKEI 272
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 39 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 98
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 99 KCLKTLKGHSNYVF 112
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 18/207 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 81 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 132
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G L AH V + + + + S S DG RI+D + + +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 193 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 247
Query: 267 APQSRRHICSVGDDSQAFIWELPLPPV 293
+ + I S +D+ +IW L +
Sbjct: 248 SVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 41 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 101 KCLKTLKGHSNYVF 114
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 18/202 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 77 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 128
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G L AH V + + + + S S DG RI+D + + +
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 188
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 189 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 243
Query: 267 APQSRRHICSVGDDSQAFIWEL 288
+ + I S +D+ +IW L
Sbjct: 244 SVTGGKWIVSGSEDNLVYIWNL 265
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 37 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 96
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 97 KCLKTLKGHSNYVF 110
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 93 LLASSGDFL-RLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTC 151
+++SS D L R+WD + +++ P SF K I ++D T
Sbjct: 163 IVSSSYDGLCRIWDTASGQCLKTLIDDDN-------PPVSFVKFSPNGKYILAATLDNTL 215
Query: 152 TIWDIEKGVVETQLIAHDKEVYDICWG----EARVFASVSADGSVRIFDLRDKE 201
+WD KG H E Y I + S S D V I++L+ KE
Sbjct: 216 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 269
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 18/207 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 83 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 134
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G L AH V + + + + S S DG RI+D + + +
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 194
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 195 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 249
Query: 267 APQSRRHICSVGDDSQAFIWELPLPPV 293
+ + I S +D+ +IW L +
Sbjct: 250 SVTGGKWIVSGSEDNLVYIWNLQTKEI 276
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 43 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 102
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 103 KCLKTLKGHSNYVF 116
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 18/202 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 84 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 135
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G L AH V + + + + S S DG RI+D + + +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 196 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 250
Query: 267 APQSRRHICSVGDDSQAFIWEL 288
+ + I S +D+ +IW L
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNL 272
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 104 KCLKTLKGHSNYVF 117
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 93 LLASSGDFL-RLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTC 151
+++SS D L R+WD + +++ P SF K I ++D T
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDN-------PPVSFVKFSPNGKYILAATLDNTL 222
Query: 152 TIWDIEKGVVETQLIAHDKEVYDICWG----EARVFASVSADGSVRIFDLRDKE 201
+WD KG H E Y I + S S D V I++L+ KE
Sbjct: 223 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 215 PLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT-LPVAELERHRACVNAIAWAPQSRRH 273
P+ AWNK R I ++++V I + + V EL+ H V + WAP S R
Sbjct: 10 PISCHAWNKD--RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR- 66
Query: 274 ICSVGDDSQAFIWEL 288
I + G D A++W L
Sbjct: 67 IVTCGTDRNAYVWTL 81
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 18/202 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 78 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 129
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G L AH V + + + + S S DG RI+D + + +
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 190 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 244
Query: 267 APQSRRHICSVGDDSQAFIWEL 288
+ + I S +D+ +IW L
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNL 266
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 98 KCLKTLKGHSNYVF 111
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 93 LLASSGDFL-RLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTC 151
+++SS D L R+WD + +++ P SF K I ++D T
Sbjct: 164 IVSSSYDGLCRIWDTASGQCLKTLIDDDN-------PPVSFVKFSPNGKYILAATLDNTL 216
Query: 152 TIWDIEKGVVETQLIAHDKEVYDICWG----EARVFASVSADGSVRIFDLRDKE 201
+WD KG H E Y I + S S D V I++L+ KE
Sbjct: 217 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 18/207 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 78 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 129
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G L AH V + + + + S S DG RI+D + + +
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 190 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 244
Query: 267 APQSRRHICSVGDDSQAFIWELPLPPV 293
+ + I S +D+ +IW L +
Sbjct: 245 SVTGGKWIVSGSEDNLVYIWNLQTKEI 271
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 38 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 98 KCLKTLKGHSNYVF 111
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 18/207 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 81 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 132
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G L AH V + + + + S S DG RI+D + + +
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 193 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 247
Query: 267 APQSRRHICSVGDDSQAFIWELPLPPV 293
+ + I S +D+ +IW L +
Sbjct: 248 SVTGGKWIVSGSEDNLVYIWNLQTKEI 274
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 146 SIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD----- 199
S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 45 SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK 104
Query: 200 --KEHSTIIY 207
K HS ++
Sbjct: 105 TLKGHSNYVF 114
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 86/207 (41%), Gaps = 18/207 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 84 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 135
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G L AH V + + + + S S DG RI+D + + +
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 196 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 250
Query: 267 APQSRRHICSVGDDSQAFIWELPLPPV 293
+ + I S +D+ +IW L +
Sbjct: 251 SVTGGKWIVSGSEDNLVYIWNLQTKEI 277
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 44 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 103
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 104 KCLKTLKGHSNYVF 117
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 18/202 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 74 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 125
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G L AH V + + + + S S DG RI+D + + +
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 185
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 186 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 240
Query: 267 APQSRRHICSVGDDSQAFIWEL 288
+ + I S +D+ +IW L
Sbjct: 241 SVTGGKWIVSGSEDNLVYIWNL 262
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 34 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 93
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 94 KCLKTLKGHSNYVF 107
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 93 LLASSGDFL-RLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTC 151
+++SS D L R+WD + +++ P SF K I ++D T
Sbjct: 160 IVSSSYDGLCRIWDTASGQCLKTLIDDDN-------PPVSFVKFSPNGKYILAATLDNTL 212
Query: 152 TIWDIEKGVVETQLIAHDKEVYDICWG----EARVFASVSADGSVRIFDLRDKE 201
+WD KG H E Y I + S S D V I++L+ KE
Sbjct: 213 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 266
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 18/202 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 100 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 151
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G L AH V + + + + S S DG RI+D + + +
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 212 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 266
Query: 267 APQSRRHICSVGDDSQAFIWEL 288
+ + I S +D+ +IW L
Sbjct: 267 SVTGGKWIVSGSEDNLVYIWNL 288
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 60 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 119
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 120 KCLKTLKGHSNYVF 133
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 93 LLASSGDFL-RLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTC 151
+++SS D L R+WD + +++ P SF K I ++D T
Sbjct: 186 IVSSSYDGLCRIWDTASGQCLKTLIDDDN-------PPVSFVKFSPNGKYILAATLDNTL 238
Query: 152 TIWDIEKGVVETQLIAHDKEVY----DICWGEARVFASVSADGSVRIFDLRDKE 201
+WD KG H E Y + + S S D V I++L+ KE
Sbjct: 239 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 85/202 (42%), Gaps = 18/202 (8%)
Query: 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149
+LL S+ D L++WDV SS + + L + FC + I + S D
Sbjct: 102 NLLVSASDDKTLKIWDV--SSGKCLKTLKGHSNYVFCCNFNP------QSNLIVSGSFDE 153
Query: 150 TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208
+ IWD++ G L AH V + + + + S S DG RI+D + + +
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 213
Query: 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI-RSPTLPVAELERH-RACVNAIAW 266
P ++ + N +Y+ +D N + + D + L ++ + C+ A +
Sbjct: 214 DDNPPVSFVKFSPNG---KYILAATLD-NTLKLWDYSKGKCLKTYTGHKNEKYCIFA-NF 268
Query: 267 APQSRRHICSVGDDSQAFIWEL 288
+ + I S +D+ +IW L
Sbjct: 269 SVTGGKWIVSGSEDNLVYIWNL 290
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFASVSADGSVRIFDLRD- 199
+ + S D IW G E + H + D+ W ++ + S S D +++I+D+
Sbjct: 62 LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 121
Query: 200 ------KEHSTIIY 207
K HS ++
Sbjct: 122 KCLKTLKGHSNYVF 135
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 12/114 (10%)
Query: 93 LLASSGDFL-RLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTC 151
+++SS D L R+WD + +++ P SF K I ++D T
Sbjct: 188 IVSSSYDGLCRIWDTASGQCLKTLIDDDN-------PPVSFVKFSPNGKYILAATLDNTL 240
Query: 152 TIWDIEKGVVETQLIAHDKEVY----DICWGEARVFASVSADGSVRIFDLRDKE 201
+WD KG H E Y + + S S D V I++L+ KE
Sbjct: 241 KLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Query: 92 HLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTT 150
+++++SGD +++W+ S+ E V LN K C + + + + S D T
Sbjct: 268 YIVSASGDRTIKVWNT--STCEFVRTLNGHKRGIACL--------QYRDRLVVSGSSDNT 317
Query: 151 CTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDL 197
+WDIE G L H++ V I + R+ S + DG ++++DL
Sbjct: 318 IRLWDIECGACLRVLEGHEELVRCIRFDNKRI-VSGAYDGKIKVWDL 363
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 101 LRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV 160
+++WD +++E +L S C + + + I T S D+T +WD+ G
Sbjct: 155 IKIWD--KNTLECKRILTGHTGSVLCL--------QYDERVIITGSSDSTVRVWDVNTGE 204
Query: 161 VETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDL 197
+ LI H + V + + + + S D S+ ++D+
Sbjct: 205 MLNTLIHHCEAVLHLRFNNG-MMVTCSKDRSIAVWDM 240
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 183 FASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVIL 242
A+ S+D SV+IFD+R+ +I + + P+ ++AW + KV+I
Sbjct: 28 LATCSSDRSVKIFDVRNGGQ-ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
Query: 243 DIRSPTLPVA-ELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDP 301
+ T + E H + VN++ WAP I + G A + L G +
Sbjct: 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGA----ISLLTYTGEGQWEV 142
Query: 302 MSMYSAGS-EINQLQWSPA 319
+ +A + N + W+PA
Sbjct: 143 KKINNAHTIGCNAVSWAPA 161
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 12/137 (8%)
Query: 141 RIGTCSIDTTCTIWDIEKG--VVETQLIAHDKEVYDICWGE---ARVFASVSADGSVRIF 195
R+ TCS D + I+D+ G ++ L H+ V+ + W + AS S D V I+
Sbjct: 27 RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86
Query: 196 DLRDKEHSTI--IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRS-PTLPVA 252
+E+ T +E D+ + + W D + + +L V
Sbjct: 87 ---REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 143
Query: 253 ELER-HRACVNAIAWAP 268
++ H NA++WAP
Sbjct: 144 KINNAHTIGCNAVSWAP 160
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 44/220 (20%), Positives = 70/220 (31%), Gaps = 28/220 (12%)
Query: 142 IGTCSIDTTCTIWDIEKGVVET--QLIAHDKEVYDICWG---EARVFASVSADGSVRIFD 196
+ +CS D IW E G E + HD V +CW + A S+DG++ +
Sbjct: 74 LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLT 133
Query: 197 LRDKEHSTIIYESPQPDTPLLRLAW-------------NKQDLRYMATILMDSNKVVILD 243
+ + + ++W + Q Y+ +I
Sbjct: 134 YTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKL 193
Query: 244 IRSPT----LPVAELERHRACVNAIAWAPQ---SRRHICSVGDDSQAFIWELPLPPVAGP 296
+ +LE H V +AWAP I S D + FIW A
Sbjct: 194 WKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTC---DDASS 250
Query: 297 NGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336
N P ++ + + WS NK+ L K
Sbjct: 251 NTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK 290
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 84/204 (41%), Gaps = 31/204 (15%)
Query: 142 IGTCSIDTTCTIWDIEK-----GVVETQLIAHDKEVYDICWG-----EARVFASVSADGS 191
I T S D T +WD + +E + ++ + + +G E RV + +G
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGD 191
Query: 192 VRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDL---RYMATILMDSNKVVILDIRSPT 248
+++FDLR+ + +E+ + L ++++D+ + +AT L V + + PT
Sbjct: 192 IKLFDLRN---MALRWET-NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247
Query: 249 LPVAEL--ERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYS 306
A + + H++ V + PQ+R + G +W+ P + + M
Sbjct: 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGV 307
Query: 307 AGS------------EINQLQWSP 318
AGS I+ L WSP
Sbjct: 308 AGSVSLLQNVTLSTQPISSLDWSP 331
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 83/196 (42%), Gaps = 14/196 (7%)
Query: 144 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDI-CWGEARVFASVSADGSVRIFDLRDKEH 202
+ S D T +WD+ G + + H +V + +A + S S D +++++ ++ +
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 141
Query: 203 STIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPV-AELERHRACV 261
+T++ + +R+ N++ TI+ N ++ + A+ H + +
Sbjct: 142 ATLLGHNDW--VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 262 NAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQP 321
N + +P I S G D + +W L M SA E+ L +SP +
Sbjct: 200 NTLTASPDGTL-IASAGKDGEIMLWNLAAKK--------AMYTLSAQDEVFSLAFSPNRY 250
Query: 322 DWLAIAFSNKMQLLKV 337
WLA A + +++ +
Sbjct: 251 -WLAAATATGIKVFSL 265
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 83/196 (42%), Gaps = 14/196 (7%)
Query: 144 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDI-CWGEARVFASVSADGSVRIFDLRDKEH 202
+ S D T +WD+ G + + H +V + +A + S S D +++++ ++ +
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 141
Query: 203 STIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPV-AELERHRACV 261
+T++ + +R+ N++ TI+ N ++ + A+ H + +
Sbjct: 142 ATLLGHNDW--VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 262 NAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQP 321
N + +P I S G D + +W L M SA E+ L +SP +
Sbjct: 200 NTLTASPDGTL-IASAGKDGEIMLWNLAAKK--------AMYTLSAQDEVFSLAFSPNRY 250
Query: 322 DWLAIAFSNKMQLLKV 337
WLA A + +++ +
Sbjct: 251 -WLAAATATGIKVFSL 265
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 83/196 (42%), Gaps = 14/196 (7%)
Query: 144 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDI-CWGEARVFASVSADGSVRIFDLRDKEH 202
+ S D T +WD+ G + + H +V + +A + S S D +++++ ++ +
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 141
Query: 203 STIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPV-AELERHRACV 261
+T++ + +R+ N++ TI+ N ++ + A+ H + +
Sbjct: 142 ATLLGHNDW--VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 262 NAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQP 321
N + +P I S G D + +W L M SA E+ L +SP +
Sbjct: 200 NTLTASPDGTL-IASAGKDGEIMLWNLAAKK--------AMYTLSAQDEVFSLAFSPNRY 250
Query: 322 DWLAIAFSNKMQLLKV 337
WLA A + +++ +
Sbjct: 251 -WLAAATATGIKVFSL 265
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 83/196 (42%), Gaps = 14/196 (7%)
Query: 144 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDI-CWGEARVFASVSADGSVRIFDLRDKEH 202
+ S D T +WD+ G + + H +V + +A + S S D +++++ ++ +
Sbjct: 76 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 135
Query: 203 STIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPV-AELERHRACV 261
+T++ + +R+ N++ TI+ N ++ + A+ H + +
Sbjct: 136 ATLLGHNDW--VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 193
Query: 262 NAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQP 321
N + +P I S G D + +W L M SA E+ L +SP +
Sbjct: 194 NTLTASPDGTL-IASAGKDGEIMLWNLAAKK--------AMYTLSAQDEVFSLAFSPNRY 244
Query: 322 DWLAIAFSNKMQLLKV 337
WLA A + +++ +
Sbjct: 245 -WLAAATATGIKVFSL 259
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 83/196 (42%), Gaps = 14/196 (7%)
Query: 144 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDI-CWGEARVFASVSADGSVRIFDLRDKEH 202
+ S D T +WD+ G + + H +V + +A + S S D +++++ ++ +
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCL 141
Query: 203 STIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPV-AELERHRACV 261
+T++ + +R+ N++ TI+ N ++ + A+ H + +
Sbjct: 142 ATLLGHNDW--VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNI 199
Query: 262 NAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQP 321
N + +P I S G D + +W L M SA E+ L +SP +
Sbjct: 200 NTLTASPDGTL-IASAGKDGEIMLWNLAAKK--------AMYTLSAQDEVFSLAFSPNRY 250
Query: 322 DWLAIAFSNKMQLLKV 337
WLA A + +++ +
Sbjct: 251 -WLAAATATGIKVFSL 265
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 22/203 (10%)
Query: 69 HPYPPTKLMFDPXXXXXXXXXXXHLLASSGDFLRLWDVGDSSIEPVAVLNNSKSSEFCAP 128
H P T+++F P + AS +++WD E + +
Sbjct: 107 HRSPVTRVIFHPVFSVM-------VSASEDATIKVWDYETGDFERTLKGHTDSVQDI--- 156
Query: 129 LTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDIC-WGEARVFASVS 187
SFD + K + +CS D T +WD + + HD V + S S
Sbjct: 157 --SFDHS---GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 211
Query: 188 ADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP 247
D ++++++++ + ++ +R+ QD +A+ D + V + + +
Sbjct: 212 RDKTIKMWEVQ----TGYCVKTFTGHREWVRMVRPNQDGTLIASCSND--QTVRVWVVAT 265
Query: 248 TLPVAELERHRACVNAIAWAPQS 270
AEL HR V I+WAP+S
Sbjct: 266 KECKAELREHRHVVECISWAPES 288
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 146 SIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFA-SVSADGSVRIFDLRDK 200
S D T +WD+ G+ L+ HD V + + F S + D ++R++D ++K
Sbjct: 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Query: 127 APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW-GEARVFAS 185
P++ ++N+ K + + S D T IW G + H + + W G+ +V S
Sbjct: 248 GPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVI-S 305
Query: 186 VSADGSVRIFDLRDKEHSTIIYESPQPDTPLL--RLAWNKQDLRYMATILMDSNKVVILD 243
S DGSVR++ L+ +T++ S P+ R++ QD + A MD +V + D
Sbjct: 306 CSMDGSVRLWSLK---QNTLLALSIVDGVPIFAGRIS---QDGQKYAVAFMDG-QVNVYD 358
Query: 244 IR 245
++
Sbjct: 359 LK 360
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 215 PLLRLAWNKQDLRYMATILMDSNKVV--------ILDIRSPTLPVAELERHRACVNAIAW 266
P+L +AW + +A+ D +V +L +R P V LE H V +AW
Sbjct: 83 PVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP---VITLEGHTKRVGIVAW 139
Query: 267 APQSRRHICSVGDDSQAFIWELPLPPVA---GPNGIDPMSMYS 306
P ++ + S G D+ +W++ GP+ + P ++YS
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPD-VHPDTIYS 181
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 15/119 (12%)
Query: 227 RYMATILMDSNKVVILDIRSPTLPVAELER----------HRACVNAIAWAPQSRRHICS 276
++MA I S L LP+ + R H A V IAW P + I S
Sbjct: 45 KFMALIXEASGGGAFL-----VLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIAS 99
Query: 277 VGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLL 335
+D +WE+P + P +++ + + W P + L A + + L+
Sbjct: 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILV 158
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 101 LRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV 160
L++WD EP +L+ + PL D + + + T D +IWD+ +G
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDR---VPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGT 270
Query: 161 VETQLI-AHDKEVYDICW--GEARVFASVSADGSVRIFDLRDK--EHSTIIYESPQPDTP 215
+ L+ AH+ E++++ + + S DGS+ +D E S++ ++ + T
Sbjct: 271 MPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTF 330
Query: 216 L 216
L
Sbjct: 331 L 331
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 47/103 (45%)
Query: 185 SVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI 244
+V++ G ++I+D R + + S D L + +++ + I D+
Sbjct: 207 TVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDV 266
Query: 245 RSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWE 287
R T+PV+ L+ H A + + + P + H+ + +D + W+
Sbjct: 267 RQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 138 EPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW---GEARVFASVSADGSVRI 194
+ K + T + D IWDIE + L H++++Y + + G+ V S S D +VRI
Sbjct: 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV--SGSGDRTVRI 191
Query: 195 FDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMD 235
+DLR + S + + + +A + D +Y+A +D
Sbjct: 192 WDLRTGQCSLTL----SIEDGVTTVAVSPGDGKYIAAGSLD 228
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 36/219 (16%)
Query: 93 LLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTC 151
L++ SGD +R+WD+ + + ++ +P + K I S+D
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG--------DGKYIAAGSLDRAV 231
Query: 152 TIWDIEKGVVETQL-------IAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHS 203
+WD E G + +L H VY + + + + S S D SV++++L++ +
Sbjct: 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 291
Query: 204 TIIYESPQPDTPLLRLAW--NKQDLRYMATILMD--------SNKVVILDIRSPTLPVAE 253
+ +S P++ + + +K + +AT D V+ D +S P+
Sbjct: 292 S---DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLM 347
Query: 254 LERHRACVNAIAWAPQS----RRHICSVG-DDSQAFIWE 287
L+ HR V ++A A S ++ + G D +A IW+
Sbjct: 348 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 82/223 (36%), Gaps = 52/223 (23%)
Query: 92 HLLASSGD---FLRLWDVGDSSIEPVAVLNNSKSSEFC--APLTSFDWNEIEPKRIGTCS 146
HLL ++G FL+LWD+ + ++ S C +P + K + +CS
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRN-TMFGHTNSVNHCRFSP---------DDKLLASCS 768
Query: 147 IDTTCTIWDI-----EKGVVETQLIAH------DKEVYDIC--WGEARVFASVSADGSVR 193
D T +WD K + Q + D EV C W V+A +
Sbjct: 769 ADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIF 828
Query: 194 IFDLRDK---------EHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI 244
+FD+ HSTI Y P L +A ++ + T D
Sbjct: 829 LFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNT-----------DS 877
Query: 245 RSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWE 287
RS VA+ H + V+ + ++P + S DD +WE
Sbjct: 878 RS---KVADCRGHLSWVHGVMFSPDGSSFLTS-SDDQTIRLWE 916
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 130 TSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVY--DICWGEARVFASVS 187
T D+ ++ R+ + S D T +W+I G E + H V DI +A F+S S
Sbjct: 1052 TVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDIS-HDATKFSSTS 1110
Query: 188 ADGSVRI--FDL 197
AD + +I FDL
Sbjct: 1111 ADKTAKIWSFDL 1122
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 215 PLLRLAWNKQDLRYMATILMDSNKVV--------ILDIRSPTLPVAELERHRACVNAIAW 266
P+L +AW + +A+ D +V +L +R P V LE H V +AW
Sbjct: 83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREP---VITLEGHTKRVGIVAW 139
Query: 267 APQSRRHICSVGDDSQAFIWELPLPPVA---GPNGIDPMSMYS 306
P ++ + S G D+ +W++ GP+ + P ++YS
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD-VHPDTIYS 181
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 15/119 (12%)
Query: 227 RYMATILMDSNKVVILDIRSPTLPVAELER----------HRACVNAIAWAPQSRRHICS 276
++MA I S L LP+ + R H A V IAW P + I S
Sbjct: 45 KFMALICEASGGGAFL-----VLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIAS 99
Query: 277 VGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLL 335
+D +WE+P + P +++ + + W P + L A + + L+
Sbjct: 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILV 158
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 26/139 (18%)
Query: 92 HLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTT 150
+L +SGD LWDV S + + + + C L P G +
Sbjct: 168 QILTASGDGTCALWDV--ESGQLLQSFHGHGADVLCLDLA--------PSETGNTFVSGG 217
Query: 151 C----TIWDIEKGVVETQLIAHDKEVYDICW---GEARVFASVSADGSVRIFDLR-DKE- 201
C +WD+ G H+ +V + + G+A FAS S D + R++DLR D+E
Sbjct: 218 CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA--FASGSDDATCRLYDLRADREV 275
Query: 202 ----HSTIIYESPQPDTPL 216
+II+ + D L
Sbjct: 276 AIYSKESIIFGASSVDFSL 294
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 141 RIGTCSIDTTCTIWDIEKGVVETQLIAHDKEV--YDICWGE-ARVFASVSADGSVRIFDL 197
+I T S D TC +WD+E G + H +V D+ E F S D ++D+
Sbjct: 168 QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Query: 198 RDKEHSTIIYESPQPDTPLLR 218
R + +E+ + D +R
Sbjct: 228 RSGQ-CVQAFETHESDVNSVR 247
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 14/138 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDK 200
+ T S D +WD+ + + H V + + + AS SADG++R++D+R
Sbjct: 723 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 782
Query: 201 EHSTIIY--------ESPQPDTPLLR--LAWNKQDLRYMATILMDSNKVVILDIRSPTLP 250
I E P D ++ +W+ + I+ NKV++ DI + L
Sbjct: 783 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK---IIVAAKNKVLLFDIHTSGLL 839
Query: 251 VAELERHRACVNAIAWAP 268
H + + ++P
Sbjct: 840 AEIHTGHHSTIQYCDFSP 857
>pdb|3KCP|A Chain A, Crystal Structure Of Interacting Clostridium
Thermocellum Multimodular Components
pdb|4FL4|C Chain C, Scaffoldin Conformation And Dynamics Revealed By A
Ternary Complex From The Clostridium Thermocellum
Cellulosome
pdb|4FL4|F Chain F, Scaffoldin Conformation And Dynamics Revealed By A
Ternary Complex From The Clostridium Thermocellum
Cellulosome
pdb|4FL4|I Chain I, Scaffoldin Conformation And Dynamics Revealed By A
Ternary Complex From The Clostridium Thermocellum
Cellulosome
pdb|4FL4|L Chain L, Scaffoldin Conformation And Dynamics Revealed By A
Ternary Complex From The Clostridium Thermocellum
Cellulosome
Length = 321
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 17 THESPYPLYAMAVCGQRIAVGSFIEDYT-NRVDVVSFEPESLSIKTHPSLSFDHP-YPPT 74
T E P LY + G IA G F+ Y N ++++ EP L + +P+ SFD YP
Sbjct: 23 TVEIPVNLYGVPQKG--IASGDFVVSYDPNVLEIIEIEPGELIVDPNPTKSFDTAVYPDR 80
Query: 75 KLM 77
K++
Sbjct: 81 KMI 83
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 14/138 (10%)
Query: 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDK 200
+ T S D +WD+ + + H V + + + AS SADG++R++D+R
Sbjct: 716 LATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSA 775
Query: 201 EHSTIIY--------ESPQPDTPLLR--LAWNKQDLRYMATILMDSNKVVILDIRSPTLP 250
I E P D ++ +W+ + I+ NKV++ DI + L
Sbjct: 776 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK---IIVAAKNKVLLFDIHTSGLL 832
Query: 251 VAELERHRACVNAIAWAP 268
H + + ++P
Sbjct: 833 AEIHTGHHSTIQYCDFSP 850
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/170 (19%), Positives = 71/170 (41%), Gaps = 9/170 (5%)
Query: 169 DKEVYDICWGEA-RVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLR 227
D + + W A + AS D +RI+ S + ++AW+
Sbjct: 16 DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-N 74
Query: 228 YMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWE 287
Y+A+ D+ + + V LE H V ++AWAP S + + D ++WE
Sbjct: 75 YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWE 133
Query: 288 LPLPPVAGPNGIDPMSMYSAGSE-INQLQWSPAQPDWLAIAFSNKMQLLK 336
V + + +S+ ++ ++ + + W P+Q + ++ + ++L +
Sbjct: 134 -----VDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 58/171 (33%), Gaps = 60/171 (35%)
Query: 140 KRIGTCSIDTTCTIW-----DIEKGV-----------VETQLIAHDKEVYDICWGE-ARV 182
+R+ +CS D T IW E+GV + T H + +YDI W +
Sbjct: 207 QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA 266
Query: 183 FASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVIL 242
A+ D ++R+F E P D
Sbjct: 267 LATACGDDAIRVFQ-----------EDPNSDP---------------------------- 287
Query: 243 DIRSPTLPV-AELER-HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLP 291
+ PT + A L + H VN +AW P+ + S DD + W+ P
Sbjct: 288 --QQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 21/203 (10%)
Query: 142 IGTCSIDTTCTIWDI-EKGVVE--TQLIAHDKEVYDICWGEAR-VFASVSADGSVRIFDL 197
+ TCS D + +W++ E+ E + L +H ++V + W ++ + AS S D +V+++
Sbjct: 120 LATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY-- 177
Query: 198 RDKE------------HSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR 245
R++E ST+ + P L + + +R L + + V
Sbjct: 178 REEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGS 237
Query: 246 SPTLP-VAELER-HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMS 303
P+ + L H + IAW + + GDD+ E P P
Sbjct: 238 DPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297
Query: 304 MYSAGSE-INQLQWSPAQPDWLA 325
++ A S+ +N + W+P +P LA
Sbjct: 298 LHQAHSQDVNCVAWNPKEPGLLA 320
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 9/156 (5%)
Query: 167 AHDKEVYDICWGE-ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQD 225
AH++ ++D + A+ S+D +++IF++ + H I + + P+ R+ W
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPK 65
Query: 226 L-RYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRR-HICSVGDDSQA 283
+A+ D + + +A H A VN++ WAP + D +
Sbjct: 66 FGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKV 125
Query: 284 FIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPA 319
+ E P ID ++ +N W+PA
Sbjct: 126 SVVEFKENGTTSPIIIDAHAI-----GVNSASWAPA 156
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 148 DTTCTIWDIEKGVVETQLIAHDKEVYDI--CWGEARVFASVSADGSVRIFDLRDKEHSTI 205
D + +WD+ + V AH EV + C G+ +F S DG + ++D R + +T
Sbjct: 160 DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219
Query: 206 IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIA 265
I + DT + W+ + A ++ V +++I++P H + +A
Sbjct: 220 I-DFCASDTIPTSVTWHPEKDDTFA-CGDETGNVSLVNIKNPD-SAQTSAVHSQNITGLA 276
Query: 266 WAPQSRRHICSVGDD 280
++ S + S+ +D
Sbjct: 277 YSYHSSPFLASISED 291
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 80/196 (40%), Gaps = 14/196 (7%)
Query: 144 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDI-CWGEARVFASVSADGSVRIFDLRDKEH 202
+ S D T +WD+ G + + H +V + +A S S D +++++ ++ +
Sbjct: 82 SASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCL 141
Query: 203 STIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPV-AELERHRACV 261
+T++ + +R+ N++ TI+ N + + A+ H + +
Sbjct: 142 ATLLGHNDW--VSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNI 199
Query: 262 NAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQP 321
N + +P I S G D + +W L SA E+ L +SP +
Sbjct: 200 NTLTASPDGTL-IASAGKDGEIXLWNLAAKK--------AXYTLSAQDEVFSLAFSPNRY 250
Query: 322 DWLAIAFSNKMQLLKV 337
WLA A + +++ +
Sbjct: 251 -WLAAATATGIKVFSL 265
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 238 KVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP-----LPP 292
KV + D++S + L+ HR + A++W+P+ + + DS+ +W++ L
Sbjct: 167 KVQLCDLKSGSCSHI-LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT 225
Query: 293 VAGPNGIDPMSMYSAGS----EINQLQWSPAQPDWLAIAFSNKMQL 334
+ NG ++ SA + ++N L ++ L + N+M+L
Sbjct: 226 LDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Query: 138 EPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFD 196
+ K + + +ID I+DI G + L H + + + ++++ + S DG ++I+D
Sbjct: 175 DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYD 234
Query: 197 LRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELER 256
+ +H+ + + +L +A+ D ++++ S KV + R+ V
Sbjct: 235 V---QHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC---VHTFFD 288
Query: 257 HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL 290
H+ V + + + I SVGDD + I++ P+
Sbjct: 289 HQDQVWGVKYNGNGSK-IVSVGDDQEIHIYDCPI 321
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 96 SSGDFLRLW-DVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIW 154
S G FLR + + D ++E + + N S A SF +G ID T W
Sbjct: 263 SMGRFLREYAEFSDEAVEAIGTIENMTSRLHLAFFHSF---------LGRSDIDPRATYW 313
Query: 155 DIEKG 159
+IE G
Sbjct: 314 EIEGG 318
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|A Chain A, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|A Chain A, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|B Chain B, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|E Chain E, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|F Chain F, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 419
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 133 DWNEIEPKRIGTCSIDTTCTIWDIEKGVVET 163
D N + PK IG SID TC + D+ K ET
Sbjct: 188 DTNPVHPKHIG--SIDPTCNVADVVKDAYET 216
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 95 ASSGDFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIW 154
S+ L++W+ + E + L S+ C L KR+ + S D T +W
Sbjct: 175 GSTDRTLKVWNA--ETGECIHTLYGHTSTVRCMHL--------HEKRVVSGSRDATLRVW 224
Query: 155 DIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFD 196
DIE G L+ H V + + + R S + D V+++D
Sbjct: 225 DIETGQCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVWD 265
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/140 (19%), Positives = 56/140 (40%), Gaps = 17/140 (12%)
Query: 146 SIDTTCTIWDIEKGVVETQLIAHDK-----EVYDICWGEARVFASVSADGSVRIFDLRDK 200
S+DT+ +WD+E G L H E+ D + S +AD +V+I+D++
Sbjct: 296 SLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD------NILVSGNADSTVKIWDIKTG 349
Query: 201 EHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRAC 260
+ + + + + L +NK D V + D+++ +
Sbjct: 350 QCLQTLQGPNKHQSAVTCLQFNKN----FVITSSDDGTVKLWDLKTGEFIRNLVTLESGG 405
Query: 261 VNAIAWAPQS--RRHICSVG 278
+ W ++ + +C+VG
Sbjct: 406 SGGVVWRIRASNTKLVCAVG 425
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 166 IAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQ 224
+AH V+ + W + AS SAD +++I+++ + I + + L + W KQ
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 295
Query: 225 DL 226
L
Sbjct: 296 AL 297
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 144 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEH 202
+ S D +WD+ GV + + H K+V + + + R S S D ++++++ +
Sbjct: 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK 506
Query: 203 STI 205
TI
Sbjct: 507 YTI 509
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 137 IEPKRIGTCSIDTTCTIWD------IEKGVVETQLIAHDKEVYDICWGEARVFASVSADG 190
++ ++ T D T +WD ++K ++ Q + +++V + G R+ S+S DG
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG-NQQVGVVATGNGRII-SLSLDG 319
Query: 191 SVRIFDLRDKE 201
++ ++L E
Sbjct: 320 TLNFYELGHDE 330
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 137 IEPKRIGTCSIDTTCTIWD------IEKGVVETQLIAHDKEVYDICWGEARVFASVSADG 190
++ ++ T D T +WD ++K ++ Q + +++V + G R+ S+S DG
Sbjct: 262 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLG-NQQVGVVATGNGRII-SLSLDG 319
Query: 191 SVRIFDLRDKE 201
++ ++L E
Sbjct: 320 TLNFYELGHDE 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,978,693
Number of Sequences: 62578
Number of extensions: 389581
Number of successful extensions: 1168
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 951
Number of HSP's gapped (non-prelim): 202
length of query: 337
length of database: 14,973,337
effective HSP length: 99
effective length of query: 238
effective length of database: 8,778,115
effective search space: 2089191370
effective search space used: 2089191370
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)