Query 038533
Match_columns 337
No_of_seqs 605 out of 1673
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 12:02:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.9E-50 4E-55 316.0 24.3 283 19-336 113-479 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 7.1E-50 1.5E-54 316.2 22.7 281 18-336 172-458 (459)
3 KOG0290 Conserved WD40 repeat- 100.0 3E-44 6.5E-49 271.8 27.3 320 10-337 33-364 (364)
4 KOG0315 G-protein beta subunit 100.0 5E-44 1.1E-48 264.9 26.9 269 32-337 11-287 (311)
5 KOG0286 G-protein beta subunit 100.0 7.4E-43 1.6E-47 264.4 28.3 279 19-336 53-343 (343)
6 KOG0271 Notchless-like WD40 re 100.0 2.3E-43 4.9E-48 276.4 22.6 240 67-337 112-438 (480)
7 KOG0279 G protein beta subunit 100.0 1.3E-40 2.8E-45 250.7 28.7 289 19-337 13-312 (315)
8 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-42 3.4E-47 274.6 18.4 242 14-287 209-458 (459)
9 KOG0284 Polyadenylation factor 100.0 2.1E-42 4.5E-47 272.9 17.6 278 20-336 95-378 (464)
10 KOG0645 WD40 repeat protein [G 100.0 6.5E-40 1.4E-44 245.9 28.7 288 19-337 12-310 (312)
11 KOG0277 Peroxisomal targeting 100.0 3.7E-41 8E-46 250.4 20.4 287 23-336 10-307 (311)
12 KOG0273 Beta-transducin family 100.0 1.6E-39 3.5E-44 260.9 29.4 276 20-337 234-522 (524)
13 KOG0279 G protein beta subunit 100.0 1.2E-39 2.7E-44 245.4 24.7 243 67-337 12-261 (315)
14 KOG0273 Beta-transducin family 100.0 2.1E-39 4.6E-44 260.3 26.1 290 13-337 170-481 (524)
15 KOG0265 U5 snRNP-specific prot 100.0 1.2E-38 2.5E-43 242.5 25.5 279 18-334 44-334 (338)
16 KOG0313 Microtubule binding pr 100.0 6.4E-39 1.4E-43 251.0 24.6 293 9-336 93-416 (423)
17 KOG0295 WD40 repeat-containing 100.0 6.3E-39 1.4E-43 249.8 23.3 281 18-336 105-404 (406)
18 KOG0286 G-protein beta subunit 100.0 3.3E-38 7.2E-43 239.2 26.0 247 15-287 90-343 (343)
19 KOG0291 WD40-repeat-containing 100.0 5.2E-38 1.1E-42 265.6 29.9 279 21-337 265-549 (893)
20 KOG0266 WD40 repeat-containing 100.0 5.6E-38 1.2E-42 272.1 30.1 281 21-336 159-452 (456)
21 KOG0263 Transcription initiati 100.0 2.3E-38 4.9E-43 269.3 26.8 279 14-320 370-697 (707)
22 KOG0285 Pleiotropic regulator 100.0 1.5E-38 3.2E-43 247.4 23.1 282 19-336 149-437 (460)
23 PLN00181 protein SPA1-RELATED; 100.0 4.8E-37 1E-41 285.0 36.3 292 20-337 482-792 (793)
24 KOG0281 Beta-TrCP (transducin 100.0 1.1E-38 2.4E-43 247.5 18.6 273 21-337 197-476 (499)
25 cd00200 WD40 WD40 domain, foun 100.0 2.4E-36 5.2E-41 249.1 33.9 278 19-336 7-289 (289)
26 KOG0263 Transcription initiati 100.0 2.5E-38 5.5E-43 269.0 21.9 239 70-337 378-648 (707)
27 KOG0282 mRNA splicing factor [ 100.0 6.6E-38 1.4E-42 252.5 21.6 289 11-336 203-503 (503)
28 KOG0291 WD40-repeat-containing 100.0 2E-36 4.4E-41 256.0 31.6 292 14-337 299-611 (893)
29 KOG0284 Polyadenylation factor 100.0 1E-38 2.3E-43 252.0 16.3 242 18-291 135-382 (464)
30 KOG0264 Nucleosome remodeling 100.0 5.6E-37 1.2E-41 245.5 25.1 309 12-337 31-403 (422)
31 KOG0293 WD40 repeat-containing 100.0 8.4E-37 1.8E-41 241.8 23.5 281 19-337 222-512 (519)
32 KOG0265 U5 snRNP-specific prot 100.0 7.8E-37 1.7E-41 232.5 22.4 243 66-336 43-294 (338)
33 KOG0292 Vesicle coat complex C 100.0 1.1E-36 2.4E-41 261.8 24.9 280 21-337 9-320 (1202)
34 KOG0318 WD40 repeat stress pro 100.0 2.7E-35 5.7E-40 239.9 31.1 286 20-337 189-601 (603)
35 KOG0296 Angio-associated migra 100.0 1.2E-35 2.6E-40 231.6 27.0 286 14-337 56-397 (399)
36 KOG0316 Conserved WD40 repeat- 100.0 9.6E-36 2.1E-40 219.4 24.7 283 9-335 4-296 (307)
37 KOG0319 WD40-repeat-containing 100.0 4.4E-36 9.5E-41 253.4 25.7 278 21-336 323-617 (775)
38 KOG0315 G-protein beta subunit 100.0 1.1E-34 2.5E-39 215.3 26.4 268 14-317 32-309 (311)
39 KOG0277 Peroxisomal targeting 100.0 3.8E-36 8.2E-41 223.8 17.8 251 12-288 51-308 (311)
40 KOG0278 Serine/threonine kinas 100.0 5.2E-36 1.1E-40 222.7 17.2 284 10-337 3-296 (334)
41 KOG0645 WD40 repeat protein [G 100.0 2.8E-34 6.2E-39 215.7 26.6 239 67-336 11-259 (312)
42 KOG0276 Vesicle coat complex C 100.0 4.6E-35 1E-39 243.1 24.1 274 20-332 12-293 (794)
43 KOG0275 Conserved WD40 repeat- 100.0 1.2E-35 2.6E-40 228.9 17.7 287 16-336 208-507 (508)
44 KOG0295 WD40 repeat-containing 100.0 4.4E-35 9.6E-40 228.4 20.6 241 67-337 105-363 (406)
45 KOG0772 Uncharacterized conser 100.0 7.2E-35 1.6E-39 236.9 22.5 293 16-335 161-484 (641)
46 KOG0310 Conserved WD40 repeat- 100.0 2E-34 4.2E-39 232.8 23.7 274 20-334 25-305 (487)
47 KOG0285 Pleiotropic regulator 100.0 2E-34 4.4E-39 224.5 22.2 237 67-336 148-387 (460)
48 KOG0318 WD40 repeat stress pro 100.0 4.7E-33 1E-37 226.8 30.4 284 19-336 57-390 (603)
49 PLN00181 protein SPA1-RELATED; 100.0 3.5E-33 7.7E-38 259.3 32.2 270 44-336 457-736 (793)
50 KOG1407 WD40 repeat protein [F 100.0 5.7E-33 1.2E-37 207.7 26.9 278 19-336 18-309 (313)
51 KOG0268 Sof1-like rRNA process 100.0 4.9E-35 1.1E-39 228.1 15.7 275 18-336 63-343 (433)
52 KOG0281 Beta-TrCP (transducin 100.0 1.9E-35 4.1E-40 229.6 13.1 230 69-337 196-427 (499)
53 KOG0319 WD40-repeat-containing 100.0 2.4E-33 5.2E-38 237.0 26.2 261 44-337 302-576 (775)
54 KOG0316 Conserved WD40 repeat- 100.0 6.8E-34 1.5E-38 209.7 19.8 239 67-337 14-256 (307)
55 KOG0641 WD40 repeat protein [G 100.0 7.9E-32 1.7E-36 198.0 30.2 299 14-337 25-348 (350)
56 KOG0276 Vesicle coat complex C 100.0 7.6E-34 1.7E-38 236.0 21.3 242 67-336 10-255 (794)
57 KOG0305 Anaphase promoting com 100.0 7.1E-33 1.5E-37 231.6 26.7 272 24-337 180-460 (484)
58 KOG0640 mRNA cleavage stimulat 100.0 2E-33 4.4E-38 215.2 21.1 296 10-336 101-424 (430)
59 KOG0288 WD40 repeat protein Ti 100.0 1.9E-34 4.1E-39 228.4 16.0 280 19-336 173-459 (459)
60 KOG0292 Vesicle coat complex C 100.0 9.7E-34 2.1E-38 243.8 21.1 242 68-337 7-279 (1202)
61 KOG0643 Translation initiation 100.0 8.5E-33 1.8E-37 207.4 23.0 290 14-336 3-315 (327)
62 KOG0266 WD40 repeat-containing 100.0 1.1E-32 2.4E-37 239.1 27.1 243 67-337 156-408 (456)
63 KOG0264 Nucleosome remodeling 100.0 6.6E-33 1.4E-37 222.3 22.1 256 13-289 116-404 (422)
64 KOG0973 Histone transcription 100.0 1.9E-32 4E-37 241.1 25.8 291 19-336 11-353 (942)
65 KOG0647 mRNA export protein (c 100.0 1.7E-31 3.7E-36 203.7 25.8 273 19-329 25-315 (347)
66 KOG0306 WD40-repeat-containing 100.0 6.9E-32 1.5E-36 228.6 25.7 280 14-336 366-662 (888)
67 KOG0313 Microtubule binding pr 100.0 7.7E-32 1.7E-36 211.5 24.1 251 14-289 136-418 (423)
68 KOG0639 Transducin-like enhanc 100.0 2.4E-32 5.1E-37 221.9 20.2 289 12-337 410-703 (705)
69 cd00200 WD40 WD40 domain, foun 100.0 6.6E-31 1.4E-35 216.6 29.4 240 67-337 6-248 (289)
70 KOG1036 Mitotic spindle checkp 100.0 1.1E-30 2.4E-35 199.9 27.0 268 19-327 11-293 (323)
71 KOG1446 Histone H3 (Lys4) meth 100.0 6.9E-30 1.5E-34 196.4 31.1 276 20-335 13-300 (311)
72 KOG0274 Cdc4 and related F-box 100.0 4.9E-31 1.1E-35 228.4 27.0 272 20-337 207-481 (537)
73 PTZ00421 coronin; Provisional 100.0 5E-30 1.1E-34 221.9 32.7 228 66-320 71-315 (493)
74 KOG0282 mRNA splicing factor [ 100.0 1.3E-32 2.8E-37 222.1 15.2 242 67-336 211-460 (503)
75 KOG0283 WD40 repeat-containing 100.0 1.5E-31 3.3E-36 229.7 22.3 240 67-337 264-575 (712)
76 KOG0306 WD40-repeat-containing 100.0 1.4E-30 3.1E-35 220.8 27.5 287 15-336 314-620 (888)
77 KOG1332 Vesicle coat complex C 100.0 2.7E-31 5.8E-36 197.0 19.5 252 66-336 7-284 (299)
78 KOG0299 U3 snoRNP-associated p 100.0 5.4E-30 1.2E-34 205.9 27.7 278 16-327 137-444 (479)
79 KOG0310 Conserved WD40 repeat- 100.0 6.8E-31 1.5E-35 212.5 22.2 241 68-337 24-267 (487)
80 KOG0269 WD40 repeat-containing 100.0 2.6E-31 5.7E-36 225.8 19.8 248 69-337 38-295 (839)
81 KOG0283 WD40 repeat-containing 100.0 1E-30 2.2E-35 224.6 22.8 245 19-289 265-576 (712)
82 KOG0296 Angio-associated migra 100.0 2.3E-30 5E-35 202.3 22.7 237 18-289 103-398 (399)
83 KOG0269 WD40 repeat-containing 100.0 7.2E-31 1.6E-35 223.2 21.0 285 20-333 38-335 (839)
84 PTZ00420 coronin; Provisional 100.0 2.1E-29 4.4E-34 219.1 30.5 262 27-320 34-318 (568)
85 KOG0305 Anaphase promoting com 100.0 2.8E-30 6E-35 216.2 23.2 237 21-289 217-461 (484)
86 KOG0300 WD40 repeat-containing 100.0 4.1E-30 8.9E-35 197.9 21.7 283 20-337 147-475 (481)
87 KOG0270 WD40 repeat-containing 100.0 2.3E-29 5.1E-34 201.4 24.4 290 31-337 137-448 (463)
88 PTZ00421 coronin; Provisional 100.0 7.7E-29 1.7E-33 214.5 29.7 240 71-337 21-289 (493)
89 KOG0293 WD40 repeat-containing 100.0 7.8E-30 1.7E-34 202.4 20.3 242 19-289 267-513 (519)
90 KOG0289 mRNA splicing factor [ 100.0 4.5E-29 9.7E-34 199.3 24.4 277 23-337 221-505 (506)
91 KOG1446 Histone H3 (Lys4) meth 100.0 2.7E-28 5.9E-33 187.7 27.7 238 68-337 12-261 (311)
92 KOG0294 WD40 repeat-containing 100.0 1.3E-28 2.9E-33 189.1 25.6 264 33-337 3-280 (362)
93 KOG0294 WD40 repeat-containing 100.0 8.1E-29 1.7E-33 190.3 24.1 267 13-317 34-306 (362)
94 KOG2055 WD40 repeat protein [G 100.0 6.8E-29 1.5E-33 199.7 24.5 287 21-337 213-511 (514)
95 KOG1407 WD40 repeat protein [F 100.0 2.4E-29 5.2E-34 188.4 20.3 238 67-334 17-257 (313)
96 KOG0308 Conserved WD40 repeat- 100.0 9.6E-30 2.1E-34 212.5 19.6 277 26-336 29-325 (735)
97 KOG0647 mRNA export protein (c 100.0 7.7E-29 1.7E-33 189.3 22.6 240 67-336 24-279 (347)
98 PTZ00420 coronin; Provisional 100.0 2.6E-28 5.7E-33 212.2 28.2 216 100-337 55-292 (568)
99 KOG0278 Serine/threonine kinas 100.0 2.9E-30 6.2E-35 192.3 13.0 242 15-291 52-299 (334)
100 KOG0288 WD40 repeat protein Ti 100.0 2.8E-30 6E-35 204.9 13.7 242 67-337 172-416 (459)
101 KOG0643 Translation initiation 100.0 1.7E-28 3.6E-33 184.5 22.2 234 65-327 5-250 (327)
102 KOG1539 WD repeat protein [Gen 100.0 1.3E-27 2.8E-32 205.1 28.1 291 12-336 234-646 (910)
103 KOG0321 WD40 repeat-containing 100.0 3E-28 6.5E-33 203.3 23.4 286 25-337 53-390 (720)
104 KOG0275 Conserved WD40 repeat- 100.0 8.5E-29 1.8E-33 191.2 18.7 244 64-336 207-465 (508)
105 KOG0640 mRNA cleavage stimulat 100.0 1.4E-28 3.1E-33 188.8 19.4 248 18-289 169-426 (430)
106 KOG0289 mRNA splicing factor [ 100.0 5.2E-28 1.1E-32 193.2 23.1 238 71-336 220-460 (506)
107 KOG1007 WD repeat protein TSSC 100.0 1.4E-27 3E-32 181.5 23.4 285 31-336 26-359 (370)
108 KOG0641 WD40 repeat protein [G 100.0 7E-27 1.5E-31 172.0 26.1 245 20-289 88-349 (350)
109 KOG0302 Ribosome Assembly prot 100.0 6.5E-28 1.4E-32 189.5 22.0 253 67-335 148-435 (440)
110 KOG0772 Uncharacterized conser 100.0 1.7E-28 3.7E-33 200.0 19.5 249 67-336 164-443 (641)
111 KOG0301 Phospholipase A2-activ 100.0 2.1E-27 4.6E-32 199.9 25.3 270 19-336 12-286 (745)
112 KOG1332 Vesicle coat complex C 100.0 4.2E-28 9E-33 180.1 18.7 249 18-289 8-286 (299)
113 KOG4283 Transcription-coupled 100.0 1.7E-27 3.6E-32 181.6 21.8 288 17-336 39-363 (397)
114 KOG1408 WD40 repeat protein [F 100.0 2.6E-27 5.6E-32 200.4 24.3 276 31-337 392-712 (1080)
115 KOG0274 Cdc4 and related F-box 100.0 1.5E-27 3.4E-32 206.8 23.5 234 19-293 247-486 (537)
116 KOG0307 Vesicle coat complex C 100.0 8.9E-29 1.9E-33 219.1 16.0 295 25-337 10-326 (1049)
117 KOG0270 WD40 repeat-containing 100.0 1.3E-27 2.9E-32 191.4 19.4 247 21-289 173-449 (463)
118 KOG0646 WD40 repeat protein [G 100.0 2.9E-27 6.2E-32 190.6 20.9 251 31-321 50-332 (476)
119 KOG1034 Transcriptional repres 100.0 2.9E-27 6.4E-32 182.7 19.7 292 20-336 37-381 (385)
120 KOG0300 WD40 repeat-containing 100.0 2.5E-27 5.4E-32 182.6 19.1 240 67-337 145-427 (481)
121 KOG1036 Mitotic spindle checkp 100.0 2.5E-26 5.5E-31 176.2 23.2 240 67-337 10-261 (323)
122 KOG2096 WD40 repeat protein [G 100.0 4.1E-26 8.8E-31 175.9 24.4 289 20-336 85-400 (420)
123 KOG0308 Conserved WD40 repeat- 100.0 3.1E-27 6.7E-32 197.7 19.7 228 92-336 38-283 (735)
124 KOG2445 Nuclear pore complex c 100.0 4E-26 8.8E-31 175.0 23.4 253 66-336 9-316 (361)
125 KOG4378 Nuclear protein COP1 [ 100.0 1.7E-26 3.8E-31 187.7 21.6 266 21-320 34-305 (673)
126 KOG0646 WD40 repeat protein [G 100.0 8.9E-26 1.9E-30 182.1 25.1 267 43-337 16-306 (476)
127 KOG2445 Nuclear pore complex c 100.0 1.4E-25 3E-30 172.1 23.9 255 18-292 10-321 (361)
128 KOG0299 U3 snoRNP-associated p 100.0 3.2E-26 7E-31 184.3 21.3 250 67-337 139-409 (479)
129 KOG4328 WD40 protein [Function 100.0 6.1E-26 1.3E-30 182.6 22.8 288 20-336 185-493 (498)
130 KOG0650 WD40 repeat nucleolar 100.0 5.8E-26 1.3E-30 188.5 23.2 298 8-335 386-732 (733)
131 KOG0302 Ribosome Assembly prot 100.0 1.8E-26 4E-31 181.4 19.1 248 17-282 147-432 (440)
132 KOG0268 Sof1-like rRNA process 100.0 4.6E-27 1E-31 183.9 15.0 242 14-290 101-346 (433)
133 KOG1539 WD repeat protein [Gen 99.9 2.3E-25 4.9E-30 191.4 25.7 288 12-337 192-605 (910)
134 KOG2106 Uncharacterized conser 99.9 7.1E-25 1.5E-29 178.6 27.0 280 21-337 154-476 (626)
135 KOG1274 WD40 repeat protein [G 99.9 4.3E-25 9.4E-30 191.6 27.4 274 16-331 8-293 (933)
136 KOG2048 WD40 repeat protein [G 99.9 4.8E-25 1E-29 185.4 26.7 280 21-334 25-315 (691)
137 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.7E-24 8.1E-29 178.2 31.3 263 32-337 2-278 (300)
138 KOG0301 Phospholipase A2-activ 99.9 8.8E-26 1.9E-30 190.3 20.8 235 67-337 11-248 (745)
139 KOG1273 WD40 repeat protein [G 99.9 6.6E-25 1.4E-29 169.0 23.6 288 10-337 13-321 (405)
140 KOG0973 Histone transcription 99.9 1E-25 2.3E-30 198.9 21.9 255 13-295 60-361 (942)
141 KOG4283 Transcription-coupled 99.9 7.6E-26 1.6E-30 172.7 17.5 206 127-337 44-275 (397)
142 KOG1445 Tumor-specific antigen 99.9 1.5E-25 3.3E-30 187.5 20.2 140 189-336 602-748 (1012)
143 KOG1007 WD repeat protein TSSC 99.9 8.5E-25 1.8E-29 166.5 21.6 257 19-289 61-361 (370)
144 KOG1063 RNA polymerase II elon 99.9 2.1E-24 4.6E-29 182.0 25.6 295 19-337 189-647 (764)
145 KOG0267 Microtubule severing p 99.9 5.9E-27 1.3E-31 198.2 9.9 231 67-328 25-258 (825)
146 KOG2106 Uncharacterized conser 99.9 3.2E-23 7E-28 169.1 29.4 274 21-336 200-519 (626)
147 KOG4378 Nuclear protein COP1 [ 99.9 2E-24 4.4E-29 175.7 21.3 263 44-337 11-279 (673)
148 KOG4328 WD40 protein [Function 99.9 4.3E-24 9.3E-29 172.0 21.7 250 67-336 183-448 (498)
149 KOG1408 WD40 repeat protein [F 99.9 1.6E-24 3.4E-29 183.7 18.7 248 17-290 455-714 (1080)
150 KOG1274 WD40 repeat protein [G 99.9 1.8E-23 3.9E-28 181.7 25.5 241 67-337 10-261 (933)
151 KOG2096 WD40 repeat protein [G 99.9 2E-23 4.4E-28 161.1 22.8 248 66-336 82-358 (420)
152 KOG0307 Vesicle coat complex C 99.9 2.8E-25 6E-30 197.2 14.0 256 13-290 56-328 (1049)
153 KOG0639 Transducin-like enhanc 99.9 1.6E-24 3.4E-29 176.7 17.1 243 66-337 415-662 (705)
154 KOG1009 Chromatin assembly com 99.9 2E-23 4.3E-28 165.9 21.9 285 20-334 12-368 (434)
155 KOG0267 Microtubule severing p 99.9 2.8E-25 6.2E-30 188.1 9.1 228 21-281 28-260 (825)
156 KOG2919 Guanine nucleotide-bin 99.9 1.4E-22 3E-27 156.8 20.8 283 24-327 52-359 (406)
157 KOG0303 Actin-binding protein 99.9 3.3E-22 7.2E-27 158.5 23.2 238 31-289 44-294 (472)
158 KOG1034 Transcriptional repres 99.9 6.6E-23 1.4E-27 158.8 18.4 244 20-289 88-383 (385)
159 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.9E-21 1.3E-25 158.9 31.4 264 14-318 23-300 (300)
160 KOG2919 Guanine nucleotide-bin 99.9 2.1E-22 4.6E-27 155.8 19.7 252 10-280 93-361 (406)
161 KOG1538 Uncharacterized conser 99.9 3.9E-22 8.5E-27 168.2 22.3 274 19-337 10-292 (1081)
162 KOG1188 WD40 repeat protein [G 99.9 1.1E-21 2.3E-26 152.9 22.1 282 31-337 40-345 (376)
163 KOG1063 RNA polymerase II elon 99.9 2.4E-21 5.2E-26 163.8 25.6 290 19-336 265-697 (764)
164 KOG1273 WD40 repeat protein [G 99.9 4.4E-22 9.5E-27 153.6 19.2 240 73-336 26-278 (405)
165 KOG2055 WD40 repeat protein [G 99.9 7.8E-22 1.7E-26 159.3 21.4 244 68-336 211-465 (514)
166 KOG0290 Conserved WD40 repeat- 99.9 6.3E-22 1.4E-26 151.0 19.4 245 17-285 92-361 (364)
167 KOG4227 WD40 repeat protein [G 99.9 1.2E-21 2.5E-26 155.6 21.1 296 18-336 53-385 (609)
168 KOG0321 WD40 repeat-containing 99.9 8.1E-22 1.7E-26 165.2 21.1 253 18-289 97-391 (720)
169 KOG1587 Cytoplasmic dynein int 99.9 7.4E-21 1.6E-25 164.3 26.8 272 44-337 221-515 (555)
170 KOG2048 WD40 repeat protein [G 99.9 3.8E-21 8.3E-26 162.2 23.9 239 69-336 24-273 (691)
171 KOG0322 G-protein beta subunit 99.9 1.4E-21 3.1E-26 147.2 17.0 257 11-288 3-322 (323)
172 KOG0649 WD40 repeat protein [G 99.9 2.3E-20 5.1E-25 139.1 22.4 280 23-336 12-314 (325)
173 KOG0650 WD40 repeat nucleolar 99.9 3.3E-21 7.1E-26 160.5 19.1 239 67-336 397-678 (733)
174 KOG1587 Cytoplasmic dynein int 99.9 2.5E-20 5.4E-25 161.0 25.0 263 12-289 233-516 (555)
175 KOG1188 WD40 repeat protein [G 99.9 3.8E-21 8.3E-26 149.8 17.0 193 140-337 41-241 (376)
176 KOG4227 WD40 repeat protein [G 99.9 1E-20 2.2E-25 150.3 17.7 247 67-337 53-321 (609)
177 KOG0642 Cell-cycle nuclear pro 99.9 5.2E-21 1.1E-25 158.3 15.4 244 67-337 291-560 (577)
178 KOG0303 Actin-binding protein 99.9 1.3E-20 2.7E-25 149.7 16.8 205 115-337 75-293 (472)
179 KOG1517 Guanine nucleotide bin 99.9 1.4E-19 3E-24 160.0 24.6 296 22-336 1065-1379(1387)
180 KOG2110 Uncharacterized conser 99.9 2.9E-19 6.2E-24 140.9 23.8 236 70-337 5-247 (391)
181 PRK11028 6-phosphogluconolacto 99.9 3.5E-18 7.7E-23 143.9 32.0 265 43-337 10-303 (330)
182 KOG0649 WD40 repeat protein [G 99.9 5.3E-19 1.1E-23 132.0 22.7 244 10-286 50-313 (325)
183 COG2319 FOG: WD40 repeat [Gene 99.9 7.9E-18 1.7E-22 146.7 33.7 284 17-337 61-358 (466)
184 KOG1523 Actin-related protein 99.9 5.4E-19 1.2E-23 136.9 22.7 227 20-269 9-260 (361)
185 KOG0644 Uncharacterized conser 99.9 7.6E-21 1.6E-25 164.1 12.9 239 67-335 187-465 (1113)
186 KOG0771 Prolactin regulatory e 99.8 7.2E-19 1.6E-23 141.0 22.3 197 130-337 148-353 (398)
187 KOG1445 Tumor-specific antigen 99.8 1E-19 2.2E-24 153.0 15.9 241 31-289 591-844 (1012)
188 KOG0642 Cell-cycle nuclear pro 99.8 3.7E-20 8E-25 153.3 12.9 247 19-290 292-562 (577)
189 KOG2110 Uncharacterized conser 99.8 5.4E-17 1.2E-21 128.3 29.6 232 22-292 6-251 (391)
190 KOG1524 WD40 repeat-containing 99.8 1.3E-18 2.8E-23 143.6 20.9 264 19-334 12-282 (737)
191 KOG1963 WD40 repeat protein [G 99.8 2.4E-17 5.2E-22 143.5 29.4 287 24-336 163-536 (792)
192 KOG0322 G-protein beta subunit 99.8 7.4E-19 1.6E-23 132.7 15.4 242 67-337 11-322 (323)
193 KOG1538 Uncharacterized conser 99.8 6.1E-19 1.3E-23 149.2 16.0 234 19-292 51-296 (1081)
194 KOG1272 WD40-repeat-containing 99.8 2.8E-19 6E-24 145.0 12.5 265 21-327 129-397 (545)
195 PRK01742 tolB translocation pr 99.8 7.3E-18 1.6E-22 146.3 22.2 235 44-320 183-427 (429)
196 KOG1523 Actin-related protein 99.8 5.2E-18 1.1E-22 131.5 18.8 234 69-329 9-269 (361)
197 KOG1517 Guanine nucleotide bin 99.8 1.8E-17 3.9E-22 146.9 24.3 247 69-337 1063-1332(1387)
198 COG2319 FOG: WD40 repeat [Gene 99.8 2.7E-16 5.8E-21 137.1 32.0 274 23-337 111-399 (466)
199 KOG1524 WD40 repeat-containing 99.8 2.9E-18 6.4E-23 141.5 17.7 226 67-327 11-245 (737)
200 KOG1354 Serine/threonine prote 99.8 1.3E-17 2.7E-22 130.7 20.0 301 19-336 23-432 (433)
201 KOG1334 WD40 repeat protein [G 99.8 4.5E-18 9.7E-23 138.8 14.9 288 19-336 140-464 (559)
202 KOG1963 WD40 repeat protein [G 99.8 4.3E-17 9.3E-22 142.0 21.6 234 75-336 21-320 (792)
203 KOG1310 WD40 repeat protein [G 99.8 5.2E-18 1.1E-22 140.5 14.9 217 112-337 41-302 (758)
204 KOG0280 Uncharacterized conser 99.8 1.2E-16 2.7E-21 122.6 21.2 289 31-335 24-330 (339)
205 KOG1240 Protein kinase contain 99.8 2.3E-16 4.9E-21 142.1 26.0 298 18-336 1045-1431(1431)
206 KOG0644 Uncharacterized conser 99.8 3E-18 6.6E-23 148.2 12.9 236 19-290 188-469 (1113)
207 KOG2111 Uncharacterized conser 99.8 4.4E-15 9.6E-20 115.4 28.8 276 24-333 8-317 (346)
208 KOG1009 Chromatin assembly com 99.8 4.6E-17 1E-21 130.0 18.3 248 19-294 63-377 (434)
209 KOG0771 Prolactin regulatory e 99.8 1.7E-17 3.7E-22 133.2 15.7 195 74-289 148-354 (398)
210 PRK11028 6-phosphogluconolacto 99.8 1.7E-15 3.6E-20 127.7 28.1 251 14-289 27-304 (330)
211 KOG2111 Uncharacterized conser 99.8 4.7E-16 1E-20 120.7 21.9 235 73-337 8-255 (346)
212 KOG1272 WD40-repeat-containing 99.8 2.9E-18 6.3E-23 139.1 9.8 227 72-336 131-360 (545)
213 KOG1310 WD40 repeat protein [G 99.8 2.2E-17 4.7E-22 136.9 15.0 208 67-292 47-306 (758)
214 KOG2394 WD40 protein DMR-N9 [G 99.7 3.4E-16 7.4E-21 129.5 19.3 250 23-290 125-453 (636)
215 KOG2321 WD40 repeat protein [G 99.7 1.6E-15 3.5E-20 126.5 23.4 283 14-335 44-340 (703)
216 KOG2139 WD40 repeat protein [G 99.7 4.5E-15 9.7E-20 117.3 24.5 239 21-289 98-383 (445)
217 KOG3881 Uncharacterized conser 99.7 4.3E-16 9.3E-21 124.1 19.0 200 69-289 104-320 (412)
218 KOG2139 WD40 repeat protein [G 99.7 2.6E-15 5.7E-20 118.6 21.4 232 70-327 98-364 (445)
219 KOG4497 Uncharacterized conser 99.7 2E-15 4.4E-20 117.9 18.8 266 22-336 49-389 (447)
220 PRK01742 tolB translocation pr 99.7 3.4E-15 7.4E-20 129.7 21.2 205 100-336 185-399 (429)
221 PRK03629 tolB translocation pr 99.7 2.5E-14 5.4E-19 124.1 25.7 233 45-319 179-428 (429)
222 KOG1240 Protein kinase contain 99.7 9.1E-15 2E-19 132.0 22.7 253 67-337 1045-1333(1431)
223 KOG3881 Uncharacterized conser 99.7 6.3E-15 1.4E-19 117.5 18.6 245 67-337 52-319 (412)
224 PRK02889 tolB translocation pr 99.7 3.2E-14 7E-19 123.5 24.7 219 67-319 192-425 (427)
225 KOG2394 WD40 protein DMR-N9 [G 99.7 8.3E-15 1.8E-19 121.4 19.3 208 93-318 138-384 (636)
226 KOG1334 WD40 repeat protein [G 99.7 2.1E-15 4.6E-20 123.4 15.0 253 67-336 139-422 (559)
227 PRK04922 tolB translocation pr 99.7 3.1E-14 6.7E-19 124.0 23.5 232 45-318 184-432 (433)
228 KOG0280 Uncharacterized conser 99.7 2.1E-14 4.5E-19 110.5 18.0 246 21-289 69-333 (339)
229 KOG4497 Uncharacterized conser 99.7 7.2E-16 1.6E-20 120.3 10.1 221 75-336 13-238 (447)
230 PRK05137 tolB translocation pr 99.6 3.5E-13 7.6E-18 117.6 26.0 216 67-319 198-433 (435)
231 PF08662 eIF2A: Eukaryotic tra 99.6 7.3E-14 1.6E-18 107.2 18.3 148 173-337 9-178 (194)
232 PF10282 Lactonase: Lactonase, 99.6 4.3E-12 9.4E-17 107.2 30.8 282 34-337 2-321 (345)
233 COG2706 3-carboxymuconate cycl 99.6 2.8E-11 6.1E-16 96.5 31.8 280 33-336 4-319 (346)
234 KOG2321 WD40 repeat protein [G 99.6 1.4E-13 3E-18 115.2 19.3 237 66-336 47-300 (703)
235 KOG0309 Conserved WD40 repeat- 99.6 1.5E-14 3.2E-19 124.4 13.1 300 15-337 18-338 (1081)
236 PRK03629 tolB translocation pr 99.6 6.3E-13 1.4E-17 115.4 23.5 210 100-336 180-404 (429)
237 PRK04922 tolB translocation pr 99.6 7.4E-13 1.6E-17 115.4 22.6 210 100-336 185-409 (433)
238 PRK05137 tolB translocation pr 99.6 1.3E-12 2.7E-17 114.1 23.7 202 100-328 183-396 (435)
239 PRK02889 tolB translocation pr 99.6 1.1E-12 2.5E-17 113.9 23.2 205 100-329 177-391 (427)
240 KOG1409 Uncharacterized conser 99.6 9.1E-13 2E-17 103.8 20.1 246 17-290 19-271 (404)
241 PF08662 eIF2A: Eukaryotic tra 99.6 4.4E-13 9.5E-18 102.9 17.8 151 26-200 10-181 (194)
242 PF02239 Cytochrom_D1: Cytochr 99.6 1.2E-11 2.6E-16 104.5 27.8 268 31-336 5-345 (369)
243 KOG2315 Predicted translation 99.6 7.7E-12 1.7E-16 104.7 25.0 255 44-337 10-389 (566)
244 KOG1409 Uncharacterized conser 99.5 9.4E-13 2E-17 103.7 17.8 240 67-337 21-269 (404)
245 PRK00178 tolB translocation pr 99.5 8.6E-12 1.9E-16 109.0 25.9 218 67-319 195-428 (430)
246 KOG0974 WD-repeat protein WDR6 99.5 9.1E-13 2E-17 117.5 19.4 192 129-337 90-287 (967)
247 PRK04792 tolB translocation pr 99.5 1E-11 2.3E-16 108.3 25.0 218 67-319 214-447 (448)
248 PRK01029 tolB translocation pr 99.5 3.3E-11 7.2E-16 104.3 27.3 222 68-320 182-426 (428)
249 TIGR02800 propeller_TolB tol-p 99.5 1.5E-11 3.2E-16 107.3 24.7 195 67-289 186-397 (417)
250 KOG1354 Serine/threonine prote 99.5 2.3E-13 4.9E-18 107.1 11.7 213 18-246 81-360 (433)
251 KOG2041 WD40 repeat protein [G 99.5 1.3E-11 2.8E-16 106.5 22.8 282 19-335 12-334 (1189)
252 KOG0309 Conserved WD40 repeat- 99.5 2.9E-13 6.2E-18 116.6 11.6 247 20-289 66-339 (1081)
253 COG5170 CDC55 Serine/threonine 99.5 3.3E-12 7.1E-17 99.6 15.8 254 20-289 25-367 (460)
254 TIGR02800 propeller_TolB tol-p 99.5 2.6E-11 5.5E-16 105.9 22.4 204 100-330 171-386 (417)
255 KOG4547 WD40 repeat-containing 99.5 2.6E-11 5.6E-16 102.2 20.7 186 92-289 6-220 (541)
256 KOG0974 WD-repeat protein WDR6 99.5 2.9E-12 6.4E-17 114.3 15.7 178 99-289 109-288 (967)
257 KOG4547 WD40 repeat-containing 99.4 1.1E-11 2.3E-16 104.4 17.7 185 138-336 4-218 (541)
258 KOG2314 Translation initiation 99.4 1.9E-10 4.2E-15 96.5 23.8 280 14-328 243-557 (698)
259 PF10282 Lactonase: Lactonase, 99.4 1.5E-09 3.4E-14 91.7 28.5 257 20-289 35-322 (345)
260 PF02239 Cytochrom_D1: Cytochr 99.4 2.1E-10 4.5E-15 97.0 22.3 186 139-336 5-200 (369)
261 PRK01029 tolB translocation pr 99.4 4.8E-10 1E-14 97.2 24.8 215 100-336 166-401 (428)
262 COG2706 3-carboxymuconate cycl 99.4 1.3E-08 2.9E-13 81.5 29.5 256 19-289 37-321 (346)
263 KOG4532 WD40-like repeat conta 99.4 3.1E-10 6.6E-15 86.9 18.9 225 93-328 86-322 (344)
264 KOG1064 RAVE (regulator of V-A 99.4 8.6E-12 1.9E-16 117.2 12.4 186 71-290 2209-2399(2439)
265 PRK00178 tolB translocation pr 99.3 8.3E-10 1.8E-14 96.6 24.0 217 19-269 196-428 (430)
266 COG5354 Uncharacterized protei 99.3 2.5E-09 5.4E-14 89.0 24.2 285 14-337 65-394 (561)
267 KOG1064 RAVE (regulator of V-A 99.3 7.9E-12 1.7E-16 117.4 10.4 185 127-337 2209-2397(2439)
268 PRK04792 tolB translocation pr 99.3 7E-10 1.5E-14 96.9 22.0 216 20-269 216-447 (448)
269 KOG2041 WD40 repeat protein [G 99.3 1.3E-10 2.7E-15 100.5 16.8 233 67-329 11-279 (1189)
270 COG4946 Uncharacterized protei 99.3 2.6E-09 5.6E-14 88.3 23.0 217 92-327 280-507 (668)
271 COG4946 Uncharacterized protei 99.3 5.1E-09 1.1E-13 86.6 24.7 168 31-233 332-507 (668)
272 PF04762 IKI3: IKI3 family; I 99.3 5.4E-09 1.2E-13 98.0 28.3 294 21-336 75-454 (928)
273 KOG1912 WD40 repeat protein [G 99.3 1.2E-09 2.6E-14 95.4 21.4 235 72-336 17-302 (1062)
274 KOG4532 WD40-like repeat conta 99.3 1.4E-09 3.1E-14 83.3 18.5 202 100-321 53-263 (344)
275 KOG2315 Predicted translation 99.3 2.5E-09 5.4E-14 90.0 21.2 229 25-289 129-390 (566)
276 PF15492 Nbas_N: Neuroblastoma 99.3 1.5E-08 3.2E-13 78.9 23.5 229 75-337 2-258 (282)
277 TIGR02658 TTQ_MADH_Hv methylam 99.2 1.1E-07 2.4E-12 78.9 29.2 258 45-337 27-329 (352)
278 KOG4714 Nucleoporin [Nuclear s 99.2 3.3E-10 7.2E-15 86.3 12.9 148 138-289 100-254 (319)
279 COG5354 Uncharacterized protei 99.2 6.8E-09 1.5E-13 86.5 21.2 235 69-336 31-304 (561)
280 KOG4190 Uncharacterized conser 99.2 1.2E-10 2.5E-15 98.0 10.6 201 67-289 732-948 (1034)
281 KOG3914 WD repeat protein WDR4 99.2 4.9E-10 1.1E-14 90.4 13.1 152 31-205 74-230 (390)
282 PLN02919 haloacid dehalogenase 99.2 5.4E-08 1.2E-12 93.1 28.9 249 74-337 571-887 (1057)
283 COG5170 CDC55 Serine/threonine 99.2 2.1E-09 4.6E-14 84.2 15.7 249 68-335 24-364 (460)
284 KOG1275 PAB-dependent poly(A) 99.2 1.1E-09 2.5E-14 97.1 14.7 180 92-288 148-341 (1118)
285 KOG4714 Nucleoporin [Nuclear s 99.2 1.4E-09 3E-14 83.0 12.8 145 31-199 101-255 (319)
286 KOG1912 WD40 repeat protein [G 99.1 1.6E-08 3.5E-13 88.6 20.2 246 24-289 18-304 (1062)
287 PF04762 IKI3: IKI3 family; I 99.1 9.4E-08 2E-12 89.9 26.9 238 69-336 74-331 (928)
288 KOG2314 Translation initiation 99.1 3.9E-08 8.5E-13 83.0 21.6 234 70-336 210-476 (698)
289 PF15492 Nbas_N: Neuroblastoma 99.1 2.8E-07 6.2E-12 71.9 24.6 230 31-294 9-262 (282)
290 KOG4190 Uncharacterized conser 99.1 3.1E-10 6.6E-15 95.5 8.8 286 20-334 734-1032(1034)
291 PLN02919 haloacid dehalogenase 99.1 2.2E-07 4.9E-12 89.0 29.1 245 25-291 571-890 (1057)
292 PRK04043 tolB translocation pr 99.1 1.6E-07 3.4E-12 81.2 25.5 190 72-289 189-400 (419)
293 PF08450 SGL: SMP-30/Gluconola 99.1 8.1E-07 1.8E-11 71.6 27.8 217 75-327 4-244 (246)
294 TIGR03300 assembly_YfgL outer 99.1 1.6E-07 3.4E-12 80.9 25.2 217 93-336 148-377 (377)
295 KOG2695 WD40 repeat protein [G 99.1 6.7E-10 1.5E-14 88.0 8.3 180 15-222 206-401 (425)
296 KOG3914 WD repeat protein WDR4 99.0 1E-08 2.2E-13 83.0 13.5 154 174-337 67-222 (390)
297 KOG1645 RING-finger-containing 99.0 2.6E-08 5.7E-13 80.7 14.9 85 112-202 184-270 (463)
298 PF08450 SGL: SMP-30/Gluconola 99.0 1.1E-06 2.5E-11 70.8 24.7 222 26-277 4-244 (246)
299 KOG1008 Uncharacterized conser 99.0 5.4E-10 1.2E-14 95.5 5.2 231 70-320 56-315 (783)
300 TIGR03300 assembly_YfgL outer 99.0 1.5E-06 3.3E-11 74.8 25.8 255 31-336 65-336 (377)
301 KOG1008 Uncharacterized conser 98.9 1.3E-09 2.9E-14 93.2 5.0 245 21-289 56-335 (783)
302 KOG1920 IkappaB kinase complex 98.9 2.4E-06 5.2E-11 79.0 25.6 244 21-289 68-365 (1265)
303 KOG2695 WD40 repeat protein [G 98.9 7.9E-09 1.7E-13 82.1 8.1 149 93-255 227-385 (425)
304 PRK04043 tolB translocation pr 98.9 2.3E-06 5E-11 74.1 22.9 192 22-246 188-401 (419)
305 KOG1275 PAB-dependent poly(A) 98.8 1.1E-07 2.4E-12 84.9 14.6 187 138-336 146-340 (1118)
306 KOG0882 Cyclophilin-related pe 98.8 8.8E-08 1.9E-12 78.9 12.9 202 127-336 10-229 (558)
307 KOG2066 Vacuolar assembly/sort 98.8 3.8E-07 8.2E-12 80.5 17.0 185 21-246 39-234 (846)
308 KOG1832 HIV-1 Vpr-binding prot 98.8 6.4E-09 1.4E-13 92.4 6.2 216 13-276 1092-1318(1516)
309 PF00400 WD40: WD domain, G-be 98.8 1.1E-08 2.4E-13 56.4 4.6 38 249-287 2-39 (39)
310 PF07433 DUF1513: Protein of u 98.8 1.7E-05 3.7E-10 64.0 24.2 231 70-328 4-276 (305)
311 KOG3617 WD40 and TPR repeat-co 98.8 1.4E-06 3E-11 77.7 19.6 111 23-157 17-131 (1416)
312 PF11768 DUF3312: Protein of u 98.8 1.2E-05 2.6E-10 69.3 24.5 144 171-320 207-369 (545)
313 KOG3621 WD40 repeat-containing 98.8 2.7E-06 5.9E-11 74.3 20.1 200 25-249 39-248 (726)
314 PF00400 WD40: WD domain, G-be 98.8 4.3E-08 9.4E-13 53.9 6.0 38 112-155 2-39 (39)
315 PF11768 DUF3312: Protein of u 98.8 9.5E-06 2.1E-10 69.8 22.6 134 100-247 185-331 (545)
316 KOG0882 Cyclophilin-related pe 98.7 3E-07 6.5E-12 75.9 12.9 247 17-290 5-306 (558)
317 KOG1920 IkappaB kinase complex 98.7 8.3E-06 1.8E-10 75.6 23.2 238 69-336 67-320 (1265)
318 KOG1832 HIV-1 Vpr-binding prot 98.7 3E-08 6.5E-13 88.3 5.6 158 112-290 1092-1256(1516)
319 PRK11138 outer membrane biogen 98.7 4E-05 8.7E-10 66.4 24.5 214 93-337 163-393 (394)
320 KOG2066 Vacuolar assembly/sort 98.7 1.1E-06 2.3E-11 77.8 14.5 185 127-336 40-231 (846)
321 KOG2114 Vacuolar assembly/sort 98.6 1.7E-05 3.7E-10 71.0 21.7 214 23-261 27-259 (933)
322 PF13360 PQQ_2: PQQ-like domai 98.6 3.2E-05 6.9E-10 62.0 21.9 213 100-337 4-229 (238)
323 TIGR02658 TTQ_MADH_Hv methylam 98.6 0.00021 4.7E-09 59.7 29.6 235 29-289 53-330 (352)
324 KOG3617 WD40 and TPR repeat-co 98.6 1.5E-06 3.2E-11 77.6 13.6 107 73-198 18-131 (1416)
325 KOG1645 RING-finger-containing 98.6 8.9E-07 1.9E-11 72.1 10.8 164 151-326 175-348 (463)
326 PF07433 DUF1513: Protein of u 98.6 8.1E-05 1.8E-09 60.1 21.7 202 128-337 6-246 (305)
327 PF06977 SdiA-regulated: SdiA- 98.6 0.0002 4.4E-09 56.9 23.7 197 127-336 22-248 (248)
328 PF04053 Coatomer_WDAD: Coatom 98.5 0.0002 4.4E-09 62.1 23.9 220 69-337 31-261 (443)
329 KOG2114 Vacuolar assembly/sort 98.5 5.1E-05 1.1E-09 68.1 20.2 191 77-289 30-243 (933)
330 PF13360 PQQ_2: PQQ-like domai 98.4 0.00012 2.6E-09 58.7 19.5 178 93-289 39-230 (238)
331 PF03178 CPSF_A: CPSF A subuni 98.4 0.00029 6.4E-09 59.2 21.7 220 100-334 3-261 (321)
332 PF08553 VID27: VID27 cytoplas 98.4 7.9E-05 1.7E-09 68.3 19.0 146 138-289 492-647 (794)
333 PF00930 DPPIV_N: Dipeptidyl p 98.4 0.00075 1.6E-08 57.6 24.0 259 44-328 22-347 (353)
334 PF08596 Lgl_C: Lethal giant l 98.2 0.00033 7.1E-09 60.0 19.2 262 23-327 3-325 (395)
335 PRK11138 outer membrane biogen 98.2 0.00074 1.6E-08 58.6 21.9 137 139-288 256-393 (394)
336 PF06977 SdiA-regulated: SdiA- 98.2 0.00079 1.7E-08 53.6 18.5 198 68-286 19-247 (248)
337 PF04841 Vps16_N: Vps16, N-ter 98.1 0.0052 1.1E-07 53.4 25.5 193 100-320 62-271 (410)
338 KOG3621 WD40 repeat-containing 98.1 2.6E-05 5.5E-10 68.5 9.5 112 219-336 39-152 (726)
339 PF03178 CPSF_A: CPSF A subuni 98.1 0.0011 2.3E-08 55.9 19.2 201 18-241 20-261 (321)
340 PRK02888 nitrous-oxide reducta 98.0 0.0009 2E-08 59.5 18.0 164 100-289 216-404 (635)
341 PF04053 Coatomer_WDAD: Coatom 98.0 0.0017 3.6E-08 56.6 19.2 171 127-319 33-207 (443)
342 PF04841 Vps16_N: Vps16, N-ter 98.0 0.00098 2.1E-08 57.8 17.9 168 150-336 62-244 (410)
343 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0036 7.8E-08 53.4 21.1 211 100-327 24-299 (353)
344 COG0823 TolB Periplasmic compo 98.0 0.0018 3.8E-08 56.2 18.8 196 68-289 190-400 (425)
345 KOG4640 Anaphase-promoting com 97.9 5.8E-05 1.3E-09 65.5 8.2 93 127-223 21-115 (665)
346 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.00084 1.8E-08 45.4 11.7 100 129-237 2-107 (111)
347 PF08596 Lgl_C: Lethal giant l 97.9 0.0021 4.6E-08 55.1 17.0 200 128-337 3-289 (395)
348 COG0823 TolB Periplasmic compo 97.8 0.0021 4.5E-08 55.8 16.6 153 127-289 193-358 (425)
349 COG3386 Gluconolactonase [Carb 97.8 0.014 3E-07 48.3 20.6 197 67-280 62-277 (307)
350 PF08553 VID27: VID27 cytoplas 97.8 0.0009 2E-08 61.6 14.6 131 187-329 501-639 (794)
351 smart00320 WD40 WD40 repeats. 97.8 7.1E-05 1.5E-09 40.1 4.8 37 250-287 4-40 (40)
352 PRK02888 nitrous-oxide reducta 97.8 0.0055 1.2E-07 54.7 18.2 107 225-337 287-403 (635)
353 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0048 1E-07 41.8 13.1 102 216-334 2-110 (111)
354 KOG4640 Anaphase-promoting com 97.7 0.00027 5.8E-09 61.6 8.7 94 214-318 21-115 (665)
355 KOG2444 WD40 repeat protein [G 97.6 8.2E-05 1.8E-09 56.6 4.4 141 182-337 32-176 (238)
356 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.007 1.5E-07 47.4 14.4 123 138-268 22-145 (354)
357 smart00320 WD40 WD40 repeats. 97.5 0.00029 6.3E-09 37.6 4.8 37 113-155 4-40 (40)
358 PF06433 Me-amine-dh_H: Methyl 97.5 0.042 9E-07 45.5 24.8 238 31-291 47-322 (342)
359 PF02897 Peptidase_S9_N: Proly 97.5 0.052 1.1E-06 47.6 20.8 199 128-336 125-355 (414)
360 COG3204 Uncharacterized protei 97.5 0.035 7.7E-07 44.5 19.1 160 127-289 86-263 (316)
361 KOG4649 PQQ (pyrrolo-quinoline 97.5 0.032 6.8E-07 43.9 22.3 141 31-199 23-166 (354)
362 PF00780 CNH: CNH domain; Int 97.5 0.042 9.2E-07 45.1 23.7 224 31-290 7-256 (275)
363 KOG2395 Protein involved in va 97.5 0.0013 2.9E-08 56.4 9.7 142 141-289 348-500 (644)
364 KOG2444 WD40 repeat protein [G 97.4 0.00045 9.7E-09 52.7 6.1 142 141-289 32-177 (238)
365 PF14583 Pectate_lyase22: Olig 97.4 0.018 4E-07 48.4 16.0 224 73-326 38-299 (386)
366 KOG2395 Protein involved in va 97.4 0.012 2.6E-07 50.8 14.6 133 182-329 348-492 (644)
367 COG3386 Gluconolactonase [Carb 97.4 0.044 9.5E-07 45.4 17.7 196 133-336 31-241 (307)
368 PF14583 Pectate_lyase22: Olig 97.4 0.068 1.5E-06 45.2 25.2 268 31-335 47-378 (386)
369 PF05096 Glu_cyclase_2: Glutam 97.4 0.051 1.1E-06 43.4 18.8 185 71-278 45-250 (264)
370 PRK13616 lipoprotein LpqB; Pro 97.3 0.021 4.5E-07 51.9 16.3 175 148-336 328-523 (591)
371 COG3391 Uncharacterized conser 97.3 0.097 2.1E-06 45.2 20.7 189 130-334 77-279 (381)
372 PHA02713 hypothetical protein; 97.3 0.034 7.4E-07 50.5 17.5 141 93-247 354-535 (557)
373 PF00780 CNH: CNH domain; Int 97.2 0.088 1.9E-06 43.2 23.1 214 93-337 9-254 (275)
374 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0016 3.4E-08 36.8 5.3 32 127-160 12-43 (47)
375 PHA02713 hypothetical protein; 97.2 0.062 1.4E-06 48.9 18.3 181 93-289 306-533 (557)
376 COG3391 Uncharacterized conser 97.2 0.12 2.7E-06 44.6 21.3 197 72-289 75-283 (381)
377 PF14870 PSII_BNR: Photosynthe 97.2 0.095 2.1E-06 43.2 19.5 233 23-286 63-301 (302)
378 KOG1897 Damage-specific DNA bi 97.1 0.24 5.2E-06 46.5 26.2 225 90-335 683-939 (1096)
379 COG5276 Uncharacterized conser 97.1 0.1 2.2E-06 42.0 23.2 152 127-289 87-241 (370)
380 KOG1897 Damage-specific DNA bi 97.1 0.26 5.7E-06 46.2 25.8 270 31-334 684-1000(1096)
381 cd00216 PQQ_DH Dehydrogenases 97.0 0.23 4.9E-06 44.6 26.1 154 93-254 113-327 (488)
382 KOG4441 Proteins containing BT 97.0 0.16 3.4E-06 46.3 18.9 199 23-246 324-547 (571)
383 PRK13616 lipoprotein LpqB; Pro 97.0 0.26 5.7E-06 45.0 20.1 185 127-333 350-563 (591)
384 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0027 5.9E-08 35.9 4.8 31 258-289 11-41 (47)
385 PF15390 DUF4613: Domain of un 96.9 0.035 7.6E-07 48.8 13.2 160 21-199 19-187 (671)
386 KOG2079 Vacuolar assembly/sort 96.9 0.0074 1.6E-07 56.3 9.7 99 138-237 98-198 (1206)
387 PF10647 Gmad1: Lipoprotein Lp 96.9 0.16 3.4E-06 41.1 17.4 149 171-328 25-185 (253)
388 KOG4441 Proteins containing BT 96.9 0.22 4.8E-06 45.4 19.0 229 31-289 285-546 (571)
389 PF14727 PHTB1_N: PTHB1 N-term 96.8 0.29 6.3E-06 42.4 25.8 153 31-198 37-204 (418)
390 COG3204 Uncharacterized protei 96.8 0.2 4.3E-06 40.4 18.9 163 68-246 83-264 (316)
391 KOG2079 Vacuolar assembly/sort 96.8 0.011 2.3E-07 55.4 9.6 102 180-289 99-203 (1206)
392 PF05694 SBP56: 56kDa selenium 96.7 0.13 2.7E-06 44.1 14.3 196 138-337 86-341 (461)
393 PF02897 Peptidase_S9_N: Proly 96.7 0.4 8.7E-06 42.0 24.7 241 26-289 128-404 (414)
394 cd00216 PQQ_DH Dehydrogenases 96.7 0.47 1E-05 42.6 24.4 140 138-291 227-426 (488)
395 PF15390 DUF4613: Domain of un 96.6 0.51 1.1E-05 42.0 18.4 178 127-319 20-213 (671)
396 PF14870 PSII_BNR: Photosynthe 96.5 0.39 8.5E-06 39.7 25.4 281 15-335 10-301 (302)
397 KOG4499 Ca2+-binding protein R 96.4 0.12 2.6E-06 40.2 11.6 98 71-178 158-262 (310)
398 KOG3630 Nuclear pore complex, 96.4 0.086 1.9E-06 50.1 12.6 153 69-231 99-260 (1405)
399 COG3490 Uncharacterized protei 96.4 0.4 8.6E-06 38.6 21.6 210 68-292 65-313 (366)
400 COG3490 Uncharacterized protei 96.4 0.4 8.7E-06 38.5 17.0 244 14-289 60-348 (366)
401 PHA03098 kelch-like protein; P 96.3 0.48 1E-05 43.1 17.0 174 100-289 312-511 (534)
402 PHA03098 kelch-like protein; P 96.3 0.88 1.9E-05 41.5 19.8 141 93-246 345-512 (534)
403 PF12234 Rav1p_C: RAVE protein 96.1 0.22 4.8E-06 45.3 13.3 105 226-335 40-153 (631)
404 PHA02790 Kelch-like protein; P 95.9 0.98 2.1E-05 40.5 16.8 138 93-246 321-471 (480)
405 KOG3630 Nuclear pore complex, 95.8 0.2 4.4E-06 47.8 12.0 135 185-326 119-261 (1405)
406 KOG2280 Vacuolar assembly/sort 95.8 1.5 3.3E-05 40.3 18.1 175 100-290 65-247 (829)
407 PF10214 Rrn6: RNA polymerase 95.8 1.9 4.1E-05 41.2 23.9 172 68-247 77-278 (765)
408 COG5276 Uncharacterized conser 95.8 0.83 1.8E-05 37.0 26.1 279 16-336 81-367 (370)
409 PF10647 Gmad1: Lipoprotein Lp 95.8 0.85 1.8E-05 36.9 21.5 148 128-281 25-187 (253)
410 PF10313 DUF2415: Uncharacteri 95.6 0.054 1.2E-06 29.6 4.8 32 127-158 1-34 (43)
411 KOG2377 Uncharacterized conser 95.6 0.23 5.1E-06 42.5 10.7 142 172-324 25-169 (657)
412 KOG2280 Vacuolar assembly/sort 95.5 0.89 1.9E-05 41.7 14.6 175 148-335 63-243 (829)
413 PF10313 DUF2415: Uncharacteri 95.5 0.085 1.8E-06 28.9 5.3 32 214-246 1-34 (43)
414 PHA02790 Kelch-like protein; P 95.3 2 4.3E-05 38.6 16.6 177 93-289 274-470 (480)
415 PF06433 Me-amine-dh_H: Methyl 95.3 1.5 3.2E-05 36.7 17.1 164 32-208 148-330 (342)
416 PF10168 Nup88: Nuclear pore c 95.2 1.8 3.9E-05 40.6 16.0 74 213-289 84-179 (717)
417 PF12234 Rav1p_C: RAVE protein 95.0 0.68 1.5E-05 42.3 12.5 113 129-246 32-157 (631)
418 KOG2377 Uncharacterized conser 94.9 0.68 1.5E-05 39.9 11.4 107 168-278 65-173 (657)
419 PRK13684 Ycf48-like protein; P 94.8 2.3 4.9E-05 36.1 22.3 152 127-289 173-331 (334)
420 PF14781 BBS2_N: Ciliary BBSom 94.8 0.94 2E-05 32.1 10.0 83 11-109 37-127 (136)
421 PF02333 Phytase: Phytase; In 94.7 2.4 5.2E-05 36.3 18.6 188 138-336 67-288 (381)
422 COG4590 ABC-type uncharacteriz 94.7 0.29 6.2E-06 42.0 8.6 158 71-246 221-387 (733)
423 COG5167 VID27 Protein involved 94.6 0.41 8.9E-06 41.8 9.6 143 138-289 478-632 (776)
424 COG3823 Glutamine cyclotransfe 94.5 1.6 3.5E-05 33.5 13.9 174 93-278 58-248 (262)
425 PF14761 HPS3_N: Hermansky-Pud 94.5 1.7 3.8E-05 33.6 15.4 157 173-337 21-213 (215)
426 TIGR02604 Piru_Ver_Nterm putat 94.4 3 6.4E-05 36.0 15.2 144 128-278 15-202 (367)
427 KOG4499 Ca2+-binding protein R 94.2 2.2 4.8E-05 33.5 16.3 101 129-233 160-273 (310)
428 KOG1900 Nuclear pore complex, 94.1 2.4 5.1E-05 41.7 14.2 150 44-200 98-274 (1311)
429 PF05694 SBP56: 56kDa selenium 94.1 3.6 7.9E-05 35.7 19.0 102 100-206 223-350 (461)
430 PF14655 RAB3GAP2_N: Rab3 GTPa 94.0 1.4 3E-05 38.3 11.6 77 127-206 308-406 (415)
431 TIGR02604 Piru_Ver_Nterm putat 93.6 4.3 9.3E-05 35.0 21.8 143 71-235 14-204 (367)
432 PF05096 Glu_cyclase_2: Glutam 93.5 3.4 7.3E-05 33.4 20.7 193 13-232 34-249 (264)
433 KOG1898 Splicing factor 3b, su 93.4 7.9 0.00017 37.4 17.2 178 100-289 854-1048(1205)
434 KOG1916 Nuclear protein, conta 93.3 0.28 6.2E-06 45.7 6.7 78 100-178 154-233 (1283)
435 KOG2247 WD40 repeat-containing 93.0 0.0098 2.1E-07 50.9 -2.7 142 173-331 38-181 (615)
436 KOG1896 mRNA cleavage and poly 92.9 5.1 0.00011 39.2 14.1 163 16-198 1020-1213(1366)
437 PF14655 RAB3GAP2_N: Rab3 GTPa 92.8 6.1 0.00013 34.5 24.4 94 75-178 6-117 (415)
438 PF08728 CRT10: CRT10; InterP 92.8 1.9 4.1E-05 40.0 11.0 117 21-156 100-245 (717)
439 KOG4460 Nuclear pore complex, 92.8 2.1 4.5E-05 37.8 10.6 72 215-289 105-198 (741)
440 PF07569 Hira: TUP1-like enhan 92.7 1.2 2.6E-05 35.1 8.6 63 225-290 21-96 (219)
441 KOG4460 Nuclear pore complex, 92.4 1.5 3.1E-05 38.7 9.2 75 260-337 105-197 (741)
442 PRK10115 protease 2; Provision 92.4 10 0.00022 35.9 26.8 193 71-289 127-344 (686)
443 KOG1898 Splicing factor 3b, su 92.3 6.7 0.00015 37.8 13.9 156 23-198 879-1048(1205)
444 KOG2247 WD40 repeat-containing 92.3 0.023 5E-07 48.7 -1.4 136 31-194 46-184 (615)
445 COG5167 VID27 Protein involved 92.2 7.9 0.00017 34.3 15.5 138 93-245 481-632 (776)
446 KOG1916 Nuclear protein, conta 91.7 0.25 5.5E-06 46.0 4.3 136 148-289 110-265 (1283)
447 PF12657 TFIIIC_delta: Transcr 91.7 2.9 6.4E-05 31.5 9.5 31 170-200 86-123 (173)
448 PF07676 PD40: WD40-like Beta 91.5 0.79 1.7E-05 24.4 4.7 30 257-286 7-38 (39)
449 PF14781 BBS2_N: Ciliary BBSom 91.5 3.8 8.2E-05 29.1 10.6 117 27-160 4-128 (136)
450 PF07569 Hira: TUP1-like enhan 91.0 1.4 3.1E-05 34.7 7.5 69 266-336 18-93 (219)
451 PLN02153 epithiospecifier prot 90.6 9.9 0.00022 32.4 21.4 148 93-246 88-285 (341)
452 PF12657 TFIIIC_delta: Transcr 90.5 2.4 5.1E-05 32.1 8.0 30 260-289 87-121 (173)
453 PF02333 Phytase: Phytase; In 90.5 11 0.00023 32.5 18.1 203 31-254 67-299 (381)
454 PF12768 Rax2: Cortical protei 90.4 7.5 0.00016 32.0 11.2 98 149-246 16-124 (281)
455 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.4 14 0.0003 33.7 21.2 192 93-293 72-337 (527)
456 COG5290 IkappaB kinase complex 90.1 10 0.00023 35.5 12.6 68 262-336 250-322 (1243)
457 PF08728 CRT10: CRT10; InterP 89.9 17 0.00037 34.1 16.5 106 225-337 113-245 (717)
458 PRK13684 Ycf48-like protein; P 89.7 12 0.00026 31.8 31.7 273 19-336 43-329 (334)
459 PF14761 HPS3_N: Hermansky-Pud 89.6 3.2 7E-05 32.2 8.0 48 93-147 31-79 (215)
460 TIGR03548 mutarot_permut cycli 89.4 12 0.00026 31.5 19.8 64 138-202 123-198 (323)
461 PF10168 Nup88: Nuclear pore c 89.2 21 0.00045 33.9 21.1 81 127-208 85-189 (717)
462 KOG1900 Nuclear pore complex, 88.9 11 0.00025 37.3 12.5 140 147-290 97-273 (1311)
463 TIGR03075 PQQ_enz_alc_DH PQQ-d 88.8 18 0.0004 32.9 25.5 53 150-202 272-337 (527)
464 PF07995 GSDH: Glucose / Sorbo 88.7 14 0.0003 31.4 23.1 243 73-333 4-330 (331)
465 PF12768 Rax2: Cortical protei 88.5 13 0.00028 30.7 11.5 113 100-223 17-146 (281)
466 TIGR03548 mutarot_permut cycli 88.3 14 0.00031 31.1 18.7 83 100-189 140-233 (323)
467 COG4257 Vgb Streptogramin lyas 88.2 13 0.00027 30.3 14.3 154 128-289 63-218 (353)
468 PLN02153 epithiospecifier prot 87.8 16 0.00035 31.1 17.2 64 138-201 85-170 (341)
469 COG4590 ABC-type uncharacteriz 87.4 8.5 0.00018 33.5 9.7 160 165-337 216-385 (733)
470 PF10433 MMS1_N: Mono-function 87.2 23 0.00049 32.2 18.8 252 31-318 222-503 (504)
471 TIGR02276 beta_rpt_yvtn 40-res 87.2 3.2 6.9E-05 22.3 5.6 31 225-256 2-32 (42)
472 PF03022 MRJP: Major royal jel 86.6 17 0.00037 30.1 15.6 171 150-326 35-253 (287)
473 KOG2006 WD40 repeat protein [G 86.6 18 0.00038 35.0 12.0 66 31-109 160-227 (1023)
474 PLN02193 nitrile-specifier pro 86.1 25 0.00055 31.6 20.0 138 100-246 245-411 (470)
475 PF10214 Rrn6: RNA polymerase 85.2 37 0.00081 32.7 22.5 99 213-319 145-257 (765)
476 PF12341 DUF3639: Protein of u 83.5 2.9 6.3E-05 20.3 3.2 24 23-50 3-26 (27)
477 PF09826 Beta_propel: Beta pro 83.5 35 0.00077 31.1 21.7 176 149-337 304-517 (521)
478 PF07250 Glyoxal_oxid_N: Glyox 83.4 22 0.00047 28.6 11.2 134 151-289 48-197 (243)
479 COG5290 IkappaB kinase complex 82.3 47 0.001 31.6 13.8 98 174-276 251-354 (1243)
480 TIGR03606 non_repeat_PQQ dehyd 82.1 37 0.00079 30.3 13.1 55 214-270 30-90 (454)
481 PRK13614 lipoprotein LpqB; Pro 82.1 42 0.00091 30.9 17.4 172 147-326 319-503 (573)
482 COG5308 NUP170 Nuclear pore co 81.9 34 0.00073 32.9 11.5 143 44-201 101-278 (1263)
483 TIGR03547 muta_rot_YjhT mutatr 81.7 32 0.00069 29.3 22.9 41 149-189 168-210 (346)
484 TIGR03118 PEPCTERM_chp_1 conse 81.2 30 0.00066 28.7 19.1 203 74-292 26-282 (336)
485 KOG1983 Tomosyn and related SN 80.4 62 0.0013 32.3 13.6 34 67-109 32-67 (993)
486 TIGR02171 Fb_sc_TIGR02171 Fibr 80.1 27 0.00059 33.6 10.6 93 182-278 320-418 (912)
487 PF08801 Nucleoporin_N: Nup133 79.8 43 0.00092 29.6 13.7 30 259-289 190-219 (422)
488 TIGR03074 PQQ_membr_DH membran 79.8 60 0.0013 31.3 21.5 67 139-206 260-352 (764)
489 PF13449 Phytase-like: Esteras 78.2 41 0.00089 28.5 15.3 150 170-324 20-230 (326)
490 smart00564 PQQ beta-propeller 78.2 3.4 7.4E-05 20.8 2.7 24 140-163 7-30 (33)
491 PF11715 Nup160: Nucleoporin N 78.2 12 0.00027 34.2 8.1 67 138-204 157-254 (547)
492 PF11715 Nup160: Nucleoporin N 78.1 11 0.00024 34.5 7.8 33 260-293 216-252 (547)
493 KOG1896 mRNA cleavage and poly 77.9 80 0.0017 31.7 21.7 142 140-289 1047-1213(1366)
494 PF07995 GSDH: Glucose / Sorbo 77.9 42 0.00092 28.5 22.8 69 214-284 253-330 (331)
495 PF11635 Med16: Mediator compl 77.8 70 0.0015 30.9 18.9 72 259-333 260-345 (753)
496 PF10395 Utp8: Utp8 family; I 77.7 62 0.0013 30.3 15.7 173 14-201 122-308 (670)
497 TIGR02276 beta_rpt_yvtn 40-res 77.6 5.8 0.00013 21.2 3.8 30 138-167 2-32 (42)
498 TIGR03547 muta_rot_YjhT mutatr 74.8 52 0.0011 28.0 22.5 52 138-189 63-128 (346)
499 PRK10115 protease 2; Provision 74.4 82 0.0018 30.0 31.4 241 23-289 128-394 (686)
500 PRK13613 lipoprotein LpqB; Pro 74.2 76 0.0017 29.6 15.2 158 171-336 364-535 (599)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-50 Score=315.99 Aligned_cols=283 Identities=21% Similarity=0.345 Sum_probs=250.7
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.|..+|.|++|+ +..||+|+. |.++++||++.++..+.. .+|..-|.|++|+||++ .||+
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsG----D~TvR~WD~~TeTp~~t~-----KgH~~WVlcvawsPDgk---------~iAS 174 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSG----DTTVRLWDLDTETPLFTC-----KGHKNWVLCVAWSPDGK---------KIAS 174 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCC----CceEEeeccCCCCcceee-----cCCccEEEEEEECCCcc---------hhhc
Confidence 367899999999 999999997 999999999998877776 89999999999999999 9999
Q ss_pred eC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecC----CCCeEEEeeCCCcEEEEeCCCccchhhhhccCC
Q 038533 97 SG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEI----EPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDK 170 (337)
Q Consensus 97 ~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 170 (337)
|+ + +|++||..+++ ..-..|.+|+ ..|++++|.|. ...+|++++.||.|+|||+..++++..+.+|..
T Consensus 175 G~~dg~I~lwdpktg~-~~g~~l~gH~-----K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~ 248 (480)
T KOG0271|consen 175 GSKDGSIRLWDPKTGQ-QIGRALRGHK-----KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA 248 (480)
T ss_pred cccCCeEEEecCCCCC-cccccccCcc-----cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc
Confidence 99 5 99999999986 5667899999 99999999873 456999999999999999999999999999999
Q ss_pred ceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeee-------------------------------------------
Q 038533 171 EVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIY------------------------------------------- 207 (337)
Q Consensus 171 ~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------------------------------------- 207 (337)
+|+|++|--..++++|+.|++|++|+...+.....+.
T Consensus 249 ~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 249 SVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred ceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 9999999966799999999999999976543111000
Q ss_pred ---------------------------------cCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEe
Q 038533 208 ---------------------------------ESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAEL 254 (337)
Q Consensus 208 ---------------------------------~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 254 (337)
...+|..-|+.+.|+| +++++++++.|.. |++||.++ ++.+..+
T Consensus 329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkS-VkLW~g~t-Gk~lasf 405 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKS-VKLWDGRT-GKFLASF 405 (480)
T ss_pred HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccc-eeeeeCCC-cchhhhh
Confidence 0114567789999999 9999999999999 99999999 7789999
Q ss_pred ecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEE
Q 038533 255 ERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQL 334 (337)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 334 (337)
++|-.+|..++|+.|.+ +|++|+.|.++++|+++..+ ...-+.+|.+.|.++.|+|||..+++++.|..+++
T Consensus 406 RGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkK-------l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~l 477 (480)
T KOG0271|consen 406 RGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKK-------LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRL 477 (480)
T ss_pred hhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeee-------ecccCCCCCceEEEEEecCCCceeecCCCceEEEe
Confidence 99999999999999999 99999999999999999333 13356789999999999999999999999999999
Q ss_pred Ee
Q 038533 335 LK 336 (337)
Q Consensus 335 w~ 336 (337)
|+
T Consensus 478 w~ 479 (480)
T KOG0271|consen 478 WR 479 (480)
T ss_pred ec
Confidence 96
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=7.1e-50 Score=316.20 Aligned_cols=281 Identities=21% Similarity=0.309 Sum_probs=254.5
Q ss_pred eeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCC-CcccCcCCccEE
Q 038533 18 HESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNS-SSRKSSSNRHLL 94 (337)
Q Consensus 18 ~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~-~~~~~~~~~~~l 94 (337)
+....||..+.|+ ++.||||+. +|.+++|+.+.-...... .+|...|.++.|+|.. . .-+
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~sw----sG~~kvW~~~~~~~~~~l-----~gH~~~v~~~~fhP~~~~--------~~l 234 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSW----SGLVKVWSVPQCNLLQTL-----RGHTSRVGAAVFHPVDSD--------LNL 234 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeec----CCceeEeecCCcceeEEE-----eccccceeeEEEccCCCc--------cce
Confidence 4457899999999 999999999 999999998876444443 8999999999999983 3 378
Q ss_pred EEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCce
Q 038533 95 ASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEV 172 (337)
Q Consensus 95 ~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v 172 (337)
|+|+ | ++++|++.+. .++..+.+|. ..|..++|+| +|++|++++.|.+-++||++++..+....+|...|
T Consensus 235 at~s~Dgtvklw~~~~e--~~l~~l~gH~-----~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 235 ATASADGTVKLWKLSQE--TPLQDLEGHL-----ARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred eeeccCCceeeeccCCC--cchhhhhcch-----hhheeeeecC-CCceeeecccccchhhcccccchhhHhhccccccc
Confidence 8888 6 9999999998 7899999998 9999999999 99999999999999999999999999999999999
Q ss_pred eEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCe
Q 038533 173 YDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPV 251 (337)
Q Consensus 173 ~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~ 251 (337)
.+++|+ +|.++++|+.|..-+|||+|+++++..+. +|..+|.+|+|+| +|..|++|+.|+. ++|||+|. ..++
T Consensus 307 ~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~---gH~k~I~~V~fsP-NGy~lATgs~Dnt-~kVWDLR~-r~~l 380 (459)
T KOG0272|consen 307 FSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA---GHIKEILSVAFSP-NGYHLATGSSDNT-CKVWDLRM-RSEL 380 (459)
T ss_pred ceeEecCCCceeeccCccchhheeecccCcEEEEec---ccccceeeEeECC-CceEEeecCCCCc-EEEeeecc-cccc
Confidence 999999 89999999999999999999999655543 4889999999999 9999999999999 99999998 6679
Q ss_pred EEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCc
Q 038533 252 AELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNK 331 (337)
Q Consensus 252 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 331 (337)
.++.+|..-|+.++|+|....+|+|++.|++++||..+ + ......+.+|.+.|.+++.+|++..+++++.|.+
T Consensus 381 y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~--~-----~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 381 YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR--T-----WSPLKSLAGHEGKVISLDISPDSQAIATSSFDRT 453 (459)
T ss_pred eecccccchhhheEecccCCeEEEEcccCcceeeecCC--C-----cccchhhcCCccceEEEEeccCCceEEEeccCce
Confidence 99999999999999999555599999999999999998 3 2234588899999999999999999999999999
Q ss_pred EEEEe
Q 038533 332 MQLLK 336 (337)
Q Consensus 332 i~iw~ 336 (337)
+++|.
T Consensus 454 ~KLW~ 458 (459)
T KOG0272|consen 454 IKLWR 458 (459)
T ss_pred eeecc
Confidence 99996
No 3
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=100.00 E-value=3e-44 Score=271.80 Aligned_cols=320 Identities=62% Similarity=1.047 Sum_probs=287.6
Q ss_pred CCccceeeeeCCCceeEEEEe-----cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCc
Q 038533 10 LRSENSVTHESPYPLYAMAVC-----GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSS 84 (337)
Q Consensus 10 ~~~~~~~~~~~~~~v~~~~~s-----~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 84 (337)
...+.++.|..+.+++++.|+ +.+||.|+..+++.+.|.|..++.+..++.... .+.|..+++.+.|.|+..
T Consensus 33 ~r~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a--~fd~~YP~tK~~wiPd~~- 109 (364)
T KOG0290|consen 33 PRRKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDA--NFDHPYPVTKLMWIPDSK- 109 (364)
T ss_pred cccceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccC--CCCCCCCccceEecCCcc-
Confidence 356779999999999999999 789999999999999999999998888877633 379999999999999987
Q ss_pred ccCcCCccEEEEeCCeEEEEecC--CCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccc-
Q 038533 85 RKSSSNRHLLASSGDFLRLWDVG--DSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVV- 161 (337)
Q Consensus 85 ~~~~~~~~~l~~~~~~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~- 161 (337)
+..+.+||+++|.+|+|.+. ..+..+...+..++..++++++++++|+..+.+++.+++-|-++.|||++++..
T Consensus 110 ---g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~ 186 (364)
T KOG0290|consen 110 ---GVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG 186 (364)
T ss_pred ---ccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc
Confidence 55668999999999999998 455566677888888889999999999998999999999999999999998743
Q ss_pred --hhhhhccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC
Q 038533 162 --ETQLIAHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN 237 (337)
Q Consensus 162 --~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 237 (337)
...+.+|..+|..++|. .-+.|++++.||.+++||+|..+....+++.+....++..++|++.+.+++++...|..
T Consensus 187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~ 266 (364)
T KOG0290|consen 187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSN 266 (364)
T ss_pred ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCc
Confidence 45667899999999999 36799999999999999999999999999987767899999999999999999999988
Q ss_pred EEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEc
Q 038533 238 KVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWS 317 (337)
Q Consensus 238 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 317 (337)
.|.+.|+|.+..++..++.|.+.|+.++|.|.....|++++.|..+.+||+. ...++....|...+.-.+.|+.+.|+
T Consensus 267 ~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~--q~~~~~~~dPilay~a~~EVNqi~Ws 344 (364)
T KOG0290|consen 267 KVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ--QMPRENGEDPILAYTAGGEVNQIQWS 344 (364)
T ss_pred eEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc--cccccCCCCchhhhhccceeeeeeec
Confidence 8999999999999999999999999999999988899999999999999999 66665567787777788899999999
Q ss_pred cCCCceEEEEcCCcEEEEeC
Q 038533 318 PAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 318 ~~~~~l~~~~~d~~i~iw~l 337 (337)
|..+..++.+.++++.|.+|
T Consensus 345 ~~~~Dwiai~~~kkleiLRV 364 (364)
T KOG0290|consen 345 SSQPDWIAICFGKKLEILRV 364 (364)
T ss_pred ccCCCEEEEEecCeeeEEeC
Confidence 99999999999999998875
No 4
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5e-44 Score=264.92 Aligned_cols=269 Identities=16% Similarity=0.248 Sum_probs=234.1
Q ss_pred ceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCC-CCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCC
Q 038533 32 QRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDH-PYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDS 109 (337)
Q Consensus 32 ~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~ 109 (337)
-+||+++. |.+|++|+......... ..| ...|+.+...|+++ .||+++. .||+||++++
T Consensus 11 viLvsA~Y----DhTIRfWqa~tG~C~rT------iqh~dsqVNrLeiTpdk~---------~LAaa~~qhvRlyD~~S~ 71 (311)
T KOG0315|consen 11 VILVSAGY----DHTIRFWQALTGICSRT------IQHPDSQVNRLEITPDKK---------DLAAAGNQHVRLYDLNSN 71 (311)
T ss_pred eEEEeccC----cceeeeeehhcCeEEEE------EecCccceeeEEEcCCcc---------hhhhccCCeeEEEEccCC
Confidence 47888885 99999987665433332 344 56899999999999 9999997 9999999999
Q ss_pred CccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcC
Q 038533 110 SIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSA 188 (337)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~ 188 (337)
+..++.++.+|+ ..|+.+.|.. ++..+++|++||+++|||++...+.+.++ |..+|+++..+ +...|++|..
T Consensus 72 np~Pv~t~e~h~-----kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dq 144 (311)
T KOG0315|consen 72 NPNPVATFEGHT-----KNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQ 144 (311)
T ss_pred CCCceeEEeccC-----CceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecC
Confidence 888999999998 9999999998 99999999999999999999977666665 77999999999 5778999999
Q ss_pred CCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCC-----CCCeEEeecccceeeE
Q 038533 189 DGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP-----TLPVAELERHRACVNA 263 (337)
Q Consensus 189 dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~-----~~~~~~~~~~~~~v~~ 263 (337)
+|.|++||++.......+... ....+.++...| +|.+++.+...|+ .++|++-.. -.|+..++.|.+.+..
T Consensus 145 sg~irvWDl~~~~c~~~liPe--~~~~i~sl~v~~-dgsml~a~nnkG~-cyvW~l~~~~~~s~l~P~~k~~ah~~~il~ 220 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPE--DDTSIQSLTVMP-DGSMLAAANNKGN-CYVWRLLNHQTASELEPVHKFQAHNGHILR 220 (311)
T ss_pred CCcEEEEEccCCccccccCCC--CCcceeeEEEcC-CCcEEEEecCCcc-EEEEEccCCCccccceEhhheecccceEEE
Confidence 999999999998766555444 458899999999 9999999999998 999998652 2567788999999999
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 264 IAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 264 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
+.+||+++ +||+++.|.+++||+.+ .+.+ ....+.+|...+++++||.|+++|++++.|+.+++|++
T Consensus 221 C~lSPd~k-~lat~ssdktv~iwn~~--~~~k----le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~ 287 (311)
T KOG0315|consen 221 CLLSPDVK-YLATCSSDKTVKIWNTD--DFFK----LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDL 287 (311)
T ss_pred EEECCCCc-EEEeecCCceEEEEecC--Ccee----eEEEeecCCceEEeeeeccCccEEEecCCCCceeeccc
Confidence 99999999 99999999999999999 5311 23477789999999999999999999999999999985
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=7.4e-43 Score=264.36 Aligned_cols=279 Identities=17% Similarity=0.221 Sum_probs=242.1
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.|...|+++.|+ .++|++++. ||.+.|||.-..++.... .-...-|..++|+|.+. ++|+
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSq----DGklIvWDs~TtnK~hai-----pl~s~WVMtCA~sPSg~---------~VAc 114 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQ----DGKLIVWDSFTTNKVHAI-----PLPSSWVMTCAYSPSGN---------FVAC 114 (343)
T ss_pred ccccceeeeEecCCcCeEEeecc----CCeEEEEEcccccceeEE-----ecCceeEEEEEECCCCC---------eEEe
Confidence 467899999999 899999998 999999997766554443 23445689999999998 9999
Q ss_pred eC-C-eEEEEecCCCC----ccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCC
Q 038533 97 SG-D-FLRLWDVGDSS----IEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDK 170 (337)
Q Consensus 97 ~~-~-~v~vw~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 170 (337)
|+ | ...||++.+.+ ....+.+.+|+ +.+.|+.|- +...|++++.|.++.+||+++++.+..|.+|.+
T Consensus 115 GGLdN~Csiy~ls~~d~~g~~~v~r~l~gHt-----gylScC~f~--dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~g 187 (343)
T KOG0286|consen 115 GGLDNKCSIYPLSTRDAEGNVRVSRELAGHT-----GYLSCCRFL--DDNHILTGSGDMTCALWDIETGQQTQVFHGHTG 187 (343)
T ss_pred cCcCceeEEEecccccccccceeeeeecCcc-----ceeEEEEEc--CCCceEecCCCceEEEEEcccceEEEEecCCcc
Confidence 99 6 99999998542 34567789998 999999996 467899999999999999999999999999999
Q ss_pred ceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCC
Q 038533 171 EVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT 248 (337)
Q Consensus 171 ~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~ 248 (337)
.|.++.++ +++.|++|+-|+..++||+|.+.....+ ++|+..|+++.|.| +|.-+++|+.|+. .++||+|. .
T Consensus 188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF---~ghesDINsv~ffP-~G~afatGSDD~t-cRlyDlRa-D 261 (343)
T KOG0286|consen 188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTF---EGHESDINSVRFFP-SGDAFATGSDDAT-CRLYDLRA-D 261 (343)
T ss_pred cEEEEecCCCCCCeEEecccccceeeeeccCcceeEee---cccccccceEEEcc-CCCeeeecCCCce-eEEEeecC-C
Confidence 99999999 4899999999999999999999755444 35889999999999 9999999999999 99999998 4
Q ss_pred CCeEEeec--ccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEE
Q 038533 249 LPVAELER--HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAI 326 (337)
Q Consensus 249 ~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 326 (337)
+.+..+.. -..+|++++|+..|+ +|++|..|.++.+||.- + ++....+.+|..+|.++..+|||..+.++
T Consensus 262 ~~~a~ys~~~~~~gitSv~FS~SGR-lLfagy~d~~c~vWDtl--k-----~e~vg~L~GHeNRvScl~~s~DG~av~Tg 333 (343)
T KOG0286|consen 262 QELAVYSHDSIICGITSVAFSKSGR-LLFAGYDDFTCNVWDTL--K-----GERVGVLAGHENRVSCLGVSPDGMAVATG 333 (343)
T ss_pred cEEeeeccCcccCCceeEEEccccc-EEEeeecCCceeEeecc--c-----cceEEEeeccCCeeEEEEECCCCcEEEec
Confidence 44555542 235899999999999 99999999999999998 4 33466888999999999999999999999
Q ss_pred EcCCcEEEEe
Q 038533 327 AFSNKMQLLK 336 (337)
Q Consensus 327 ~~d~~i~iw~ 336 (337)
+.|..++||.
T Consensus 334 SWDs~lriW~ 343 (343)
T KOG0286|consen 334 SWDSTLRIWA 343 (343)
T ss_pred chhHheeecC
Confidence 9999999994
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-43 Score=276.35 Aligned_cols=240 Identities=23% Similarity=0.371 Sum_probs=206.0
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT 144 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 144 (337)
.+|.++|.+++|+|++. .||+|+ | ++|+||+.+. .+..+.++|. .-|.|++|+| +++.||+
T Consensus 112 ~GH~e~Vl~~~fsp~g~---------~l~tGsGD~TvR~WD~~Te--Tp~~t~KgH~-----~WVlcvawsP-Dgk~iAS 174 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGS---------RLVTGSGDTTVRLWDLDTE--TPLFTCKGHK-----NWVLCVAWSP-DGKKIAS 174 (480)
T ss_pred CCCCCcEEEEEecCCCc---------eEEecCCCceEEeeccCCC--CcceeecCCc-----cEEEEEEECC-Ccchhhc
Confidence 68999999999999999 999998 5 9999999998 7899999999 9999999999 9999999
Q ss_pred eeCCCcEEEEeCCCccch-hhhhccCCceeEEEeCC------CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCce
Q 038533 145 CSIDTTCTIWDIEKGVVE-TQLIAHDKEVYDICWGE------ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLL 217 (337)
Q Consensus 145 ~~~dg~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~ 217 (337)
|+.||+|++||.++++.+ ..+.+|...|++++|.| .++|++++.||.++|||+..+.+...+ .+|..+|+
T Consensus 175 G~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l---sgHT~~VT 251 (480)
T KOG0271|consen 175 GSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL---SGHTASVT 251 (480)
T ss_pred cccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe---ccCccceE
Confidence 999999999999998754 67889999999999983 678999999999999999887744333 35777888
Q ss_pred EEEeecCCCcEEEEEEecCCEEEEEE------------------------------------------------------
Q 038533 218 RLAWNKQDLRYMATILMDSNKVVILD------------------------------------------------------ 243 (337)
Q Consensus 218 ~~~~~~~~~~~l~~~~~d~~~i~i~d------------------------------------------------------ 243 (337)
|+.|. ...++++++.|+. |++|+
T Consensus 252 CvrwG--G~gliySgS~Drt-Ikvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY 328 (480)
T KOG0271|consen 252 CVRWG--GEGLIYSGSQDRT-IKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERY 328 (480)
T ss_pred EEEEc--CCceEEecCCCce-EEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHH
Confidence 88885 3455666666665 66665
Q ss_pred ------------------------CCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 038533 244 ------------------------IRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGI 299 (337)
Q Consensus 244 ------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 299 (337)
.....+|+..+.+|..-|+.+.|+||++ ++|+++.|..|++|+.+. +.
T Consensus 329 ~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r-~IASaSFDkSVkLW~g~t-------Gk 400 (480)
T KOG0271|consen 329 EAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGR-YIASASFDKSVKLWDGRT-------GK 400 (480)
T ss_pred HHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCcc-EEEEeecccceeeeeCCC-------cc
Confidence 3333345556667888999999999999 999999999999999993 33
Q ss_pred CceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 300 DPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 300 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
....+.+|-.+|+.++|+.|.+.|++++.|.++++|+|
T Consensus 401 ~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V 438 (480)
T KOG0271|consen 401 FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDV 438 (480)
T ss_pred hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEe
Confidence 46688899999999999999999999999999999986
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-40 Score=250.69 Aligned_cols=289 Identities=18% Similarity=0.223 Sum_probs=232.3
Q ss_pred eCCCceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 19 ESPYPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 19 ~~~~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
.|++.|..++.. .+.|..++. |..+.+|++......+-.......+|+..|..+..++++. +..
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasr----Dk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~---------~al 79 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASR----DKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN---------FAL 79 (315)
T ss_pred CCCceEEEEEeecCCCceEEEccc----ceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc---------eEE
Confidence 468999999998 788889997 9999999998775544222233478999999999999998 777
Q ss_pred EeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhc-cCCce
Q 038533 96 SSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIA-HDKEV 172 (337)
Q Consensus 96 ~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v 172 (337)
+++ | ++++||+.++ +..+.|.+|. ..|.+++|++ +...+++|+.|.+|++|++..+........ +.+.|
T Consensus 80 S~swD~~lrlWDl~~g--~~t~~f~GH~-----~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 80 SASWDGTLRLWDLATG--ESTRRFVGHT-----KDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWV 151 (315)
T ss_pred eccccceEEEEEecCC--cEEEEEEecC-----CceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcCcE
Confidence 777 7 9999999999 7889999999 9999999999 999999999999999999865543332222 27899
Q ss_pred eEEEeCC---CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCC
Q 038533 173 YDICWGE---ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTL 249 (337)
Q Consensus 173 ~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~ 249 (337)
.++.|+| ..++++++.|+++++||+++.+..... .+|.+.++.++++| +|.+.++|+.|+. +.+||++. ++
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~---~gh~~~v~t~~vSp-DGslcasGgkdg~-~~LwdL~~-~k 225 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF---IGHSGYVNTVTVSP-DGSLCASGGKDGE-AMLWDLNE-GK 225 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc---ccccccEEEEEECC-CCCEEecCCCCce-EEEEEccC-Cc
Confidence 9999994 568999999999999999998854443 35789999999999 9999999999998 99999998 55
Q ss_pred CeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCce--eeeeCCCceeEEEEccCCCceEEEE
Q 038533 250 PVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPM--SMYSAGSEINQLQWSPAQPDWLAIA 327 (337)
Q Consensus 250 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~ 327 (337)
.+..+. |...|.+++|+|+.. .|+.+. +..|+|||++....-.....+.. ........-.+++|+++|..|+++-
T Consensus 226 ~lysl~-a~~~v~sl~fspnry-wL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 226 NLYSLE-AFDIVNSLCFSPNRY-WLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred eeEecc-CCCeEeeEEecCCce-eEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 576665 778999999999875 555554 55699999994332211100000 1111233468899999999999999
Q ss_pred cCCcEEEEeC
Q 038533 328 FSNKMQLLKV 337 (337)
Q Consensus 328 ~d~~i~iw~l 337 (337)
.|+.|++|.|
T Consensus 303 td~~irv~qv 312 (315)
T KOG0279|consen 303 TDNVIRVWQV 312 (315)
T ss_pred cCCcEEEEEe
Confidence 9999999985
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-42 Score=274.63 Aligned_cols=242 Identities=20% Similarity=0.328 Sum_probs=220.6
Q ss_pred ceee-eeCCCceeEEEEe----cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCc
Q 038533 14 NSVT-HESPYPLYAMAVC----GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSS 88 (337)
Q Consensus 14 ~~~~-~~~~~~v~~~~~s----~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 88 (337)
.+.+ ..|...|.++.|+ +..||+|+. ||++++|+++.+...... .+|...|..++|+|+|+
T Consensus 209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~----Dgtvklw~~~~e~~l~~l-----~gH~~RVs~VafHPsG~----- 274 (459)
T KOG0272|consen 209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASA----DGTVKLWKLSQETPLQDL-----EGHLARVSRVAFHPSGK----- 274 (459)
T ss_pred eeEEEeccccceeeEEEccCCCccceeeecc----CCceeeeccCCCcchhhh-----hcchhhheeeeecCCCc-----
Confidence 3344 4578999999999 358999997 999999999887544443 79999999999999999
Q ss_pred CCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh
Q 038533 89 SNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI 166 (337)
Q Consensus 89 ~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 166 (337)
+|++++ | +-++||+.++ ..+....||. ..|.+++|+| +|.++++|+.|..-+|||+++++++..+.
T Consensus 275 ----~L~TasfD~tWRlWD~~tk--~ElL~QEGHs-----~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~ 342 (459)
T KOG0272|consen 275 ----FLGTASFDSTWRLWDLETK--SELLLQEGHS-----KGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLA 342 (459)
T ss_pred ----eeeecccccchhhcccccc--hhhHhhcccc-----cccceeEecC-CCceeeccCccchhheeecccCcEEEEec
Confidence 999998 7 9999999999 5666778888 9999999999 99999999999999999999999999999
Q ss_pred ccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECC
Q 038533 167 AHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR 245 (337)
Q Consensus 167 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~ 245 (337)
+|..+|.+|+|+ +|..++||+.|++++|||++..+. ++..+.|..-|..|.|+|..|.+|++++.|+. +++|..+
T Consensus 343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~---ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~ 418 (459)
T KOG0272|consen 343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE---LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTR 418 (459)
T ss_pred ccccceeeEeECCCceEEeecCCCCcEEEeeeccccc---ceecccccchhhheEecccCCeEEEEcccCcc-eeeecCC
Confidence 999999999999 799999999999999999998875 45556789999999999988999999999999 9999999
Q ss_pred CCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEe
Q 038533 246 SPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWE 287 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 287 (337)
+ ..+++.+.+|.+.|.++..+|++. ++++++.|+++++|.
T Consensus 419 ~-~~~~ksLaGHe~kV~s~Dis~d~~-~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 419 T-WSPLKSLAGHEGKVISLDISPDSQ-AIATSSFDRTIKLWR 458 (459)
T ss_pred C-cccchhhcCCccceEEEEeccCCc-eEEEeccCceeeecc
Confidence 8 788999999999999999999999 999999999999995
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.1e-42 Score=272.91 Aligned_cols=278 Identities=18% Similarity=0.293 Sum_probs=239.2
Q ss_pred CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe
Q 038533 20 SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS 97 (337)
Q Consensus 20 ~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~ 97 (337)
..-+|..+.|. |++|++|+. .|.+.+|+...-.-+. . ...|..+|.++.|++++. .+++|
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~----SGEFtLWNg~~fnFEt----i-lQaHDs~Vr~m~ws~~g~---------wmiSg 156 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQ----SGEFTLWNGTSFNFET----I-LQAHDSPVRTMKWSHNGT---------WMISG 156 (464)
T ss_pred cccceeeEEEcCCCceeEeecc----cccEEEecCceeeHHH----H-hhhhcccceeEEEccCCC---------EEEEc
Confidence 35689999999 899999997 9999998764322222 2 379999999999999998 99999
Q ss_pred CC--eEEEEecCCCCccceeeec-CCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeE
Q 038533 98 GD--FLRLWDVGDSSIEPVAVLN-NSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 98 ~~--~v~vw~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
.+ .|++|+..-. .++.++ .|. ..|.+++|+| +...|++++.||+|+|||....+....+.+|.-.|.+
T Consensus 157 D~gG~iKyWqpnmn---nVk~~~ahh~-----eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 157 DKGGMIKYWQPNMN---NVKIIQAHHA-----EAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred CCCceEEecccchh---hhHHhhHhhh-----hhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 84 9999998876 233333 344 7899999999 8899999999999999999999988899999999999
Q ss_pred EEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEE
Q 038533 175 ICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAE 253 (337)
Q Consensus 175 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 253 (337)
++|+ ...++++++.|..|++||.+++.++..+ ..|+..|..+.|+| ++++|++++.|.. +++||+|+ .+.++.
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~cl~tl---h~HKntVl~~~f~~-n~N~Llt~skD~~-~kv~DiR~-mkEl~~ 301 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL---HGHKNTVLAVKFNP-NGNWLLTGSKDQS-CKVFDIRT-MKELFT 301 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcchhhhh---hhccceEEEEEEcC-CCCeeEEccCCce-EEEEehhH-hHHHHH
Confidence 9999 5779999999999999999999966554 35788999999999 8899999999998 99999996 455888
Q ss_pred eecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEE
Q 038533 254 LERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQ 333 (337)
Q Consensus 254 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 333 (337)
+++|...++++.|+|-.+.+|.+|+.||.|..|.+. . ..| ....-.+|...|++++|+|-|-.|++++.|.+++
T Consensus 302 ~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~--~-~~p---~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~r 375 (464)
T KOG0284|consen 302 YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG--L-EEP---LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVR 375 (464)
T ss_pred hhcchhhheeeccccccccceeeccCCCceEEEecc--c-ccc---ccCCCcccccceeeeeccccceeEeecCCCccee
Confidence 999999999999999888899999999999999998 2 111 1234557999999999999998888888999999
Q ss_pred EEe
Q 038533 334 LLK 336 (337)
Q Consensus 334 iw~ 336 (337)
+|.
T Consensus 376 fw~ 378 (464)
T KOG0284|consen 376 FWT 378 (464)
T ss_pred eec
Confidence 995
No 10
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.5e-40 Score=245.90 Aligned_cols=288 Identities=18% Similarity=0.289 Sum_probs=235.1
Q ss_pred eCCCceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 19 ESPYPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 19 ~~~~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
.|.+.+..++|+ |..||+++. |..|+||+... ...+..+..+..+|...|..++|+|.++ +||
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~----Dk~vriw~~~~-~~s~~ck~vld~~hkrsVRsvAwsp~g~---------~La 77 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGT----DKAVRIWSTSS-GDSWTCKTVLDDGHKRSVRSVAWSPHGR---------YLA 77 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecC----CceEEEEecCC-CCcEEEEEeccccchheeeeeeecCCCc---------EEE
Confidence 357789999999 448999997 99999999885 3334443355678999999999999999 999
Q ss_pred EeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc---chhhhhccCC
Q 038533 96 SSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV---VETQLIAHDK 170 (337)
Q Consensus 96 ~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~ 170 (337)
+++ | ++.||.-..++++++..+.+|. ..|.|++|++ ++++||++++|+.|-||.+..+. +...++.|..
T Consensus 78 ~aSFD~t~~Iw~k~~~efecv~~lEGHE-----nEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDGEFECVATLEGHE-----NEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred EeeccceEEEeecCCCceeEEeeeeccc-----cceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc
Confidence 999 7 9999999999999999999999 9999999998 99999999999999999987543 6678889999
Q ss_pred ceeEEEeCC-CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCC
Q 038533 171 EVYDICWGE-ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTL 249 (337)
Q Consensus 171 ~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~ 249 (337)
.|..+.|+| ..+|++++.|.+|++|+-.....-.......+|...+.+++|+| .|..|++++.|+. ++||-... .
T Consensus 152 DVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~t-v~Iw~~~~-~- 227 (312)
T KOG0645|consen 152 DVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGT-VSIWRLYT-D- 227 (312)
T ss_pred cccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcc-eEeeeecc-C-
Confidence 999999994 78999999999999999874332222233335677999999999 9999999999999 99999774 2
Q ss_pred CeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCc-eeeeeCCCceeEEEEccC-CCceEEEE
Q 038533 250 PVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDP-MSMYSAGSEINQLQWSPA-QPDWLAIA 327 (337)
Q Consensus 250 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~~l~~~~ 327 (337)
+ -..|..++..+.|. ++ .|++++.|+.|++|.-.... ..|.-... .....|...|++++|+|. ...|++++
T Consensus 228 -~--~~~~sr~~Y~v~W~-~~--~IaS~ggD~~i~lf~~s~~~-d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~ 300 (312)
T KOG0645|consen 228 -L--SGMHSRALYDVPWD-NG--VIASGGGDDAIRLFKESDSP-DEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGG 300 (312)
T ss_pred -c--chhcccceEeeeec-cc--ceEeccCCCEEEEEEecCCC-CCchHHHHHhhhcccccccceEEEcCCCCCceeecC
Confidence 1 12367889999999 44 79999999999999887211 11111111 134468889999999994 45788889
Q ss_pred cCCcEEEEeC
Q 038533 328 FSNKMQLLKV 337 (337)
Q Consensus 328 ~d~~i~iw~l 337 (337)
.||.|++|.+
T Consensus 301 DDG~v~~W~l 310 (312)
T KOG0645|consen 301 DDGIVNFWEL 310 (312)
T ss_pred CCceEEEEEe
Confidence 9999999985
No 11
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-41 Score=250.43 Aligned_cols=287 Identities=22% Similarity=0.333 Sum_probs=238.3
Q ss_pred ceeEEEEe---cceEEEeee---eccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE-
Q 038533 23 PLYAMAVC---GQRIAVGSF---IEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA- 95 (337)
Q Consensus 23 ~v~~~~~s---~~~la~g~~---~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~- 95 (337)
.=+++.|| .++||++.. .-...|++.|.+.+...+..+. ....-++.+..++|++... +.++
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~---~s~d~~D~LfdV~Wse~~e--------~~~~~ 78 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQEC---QSYDTEDGLFDVAWSENHE--------NQVIA 78 (311)
T ss_pred ccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEE---EeeecccceeEeeecCCCc--------ceEEE
Confidence 45788999 777777654 2223789999887633332221 1256778899999999876 3444
Q ss_pred EeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeE
Q 038533 96 SSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 96 ~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
+++| ++++||+.... .++..++.|+ ..|.++.|++.....+++++.|++|++|+...++.+.++.+|...|+.
T Consensus 79 a~GDGSLrl~d~~~~s-~Pi~~~kEH~-----~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~ 152 (311)
T KOG0277|consen 79 ASGDGSLRLFDLTMPS-KPIHKFKEHK-----REVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQ 152 (311)
T ss_pred EecCceEEEeccCCCC-cchhHHHhhh-----hheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEE
Confidence 4456 99999966554 6889999998 999999999988899999999999999999999999999999999999
Q ss_pred EEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeE
Q 038533 175 ICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVA 252 (337)
Q Consensus 175 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 252 (337)
.+|+ .++++++++.|+++++||++....... .+ .|...+.++.|+..+.+.+++|+.|+. |+.||+|+.+.|+.
T Consensus 153 a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~--ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~ 228 (311)
T KOG0277|consen 153 AAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IE--AHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLF 228 (311)
T ss_pred EecCCCCCCeEEEccCCceEEEEEecCCCceeE-EE--eccceeEeecccccCCcEEEecCCCce-EEEEehhhccccce
Confidence 9999 489999999999999999998764444 22 467899999999999999999999998 99999999999999
Q ss_pred EeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCC-ceEEEEcCCc
Q 038533 253 ELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQP-DWLAIAFSNK 331 (337)
Q Consensus 253 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~ 331 (337)
.+.+|.-.|+.++|+|....+|++++.|-+++|||...+. . .......|..-+..+.|++..+ ++++++.|+.
T Consensus 229 eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s----~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 229 ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--S----AIETVDHHTEFVCGLDWSLFDPGQVASTGWDEL 302 (311)
T ss_pred eecCCceEEEEEecCcchhhHhhhccccceEEecccccch--h----hhhhhhccceEEeccccccccCceeeecccccc
Confidence 9999999999999999988799999999999999998322 1 1224456888899999998543 5667889999
Q ss_pred EEEEe
Q 038533 332 MQLLK 336 (337)
Q Consensus 332 i~iw~ 336 (337)
+.||+
T Consensus 303 l~Vw~ 307 (311)
T KOG0277|consen 303 LYVWN 307 (311)
T ss_pred eeeec
Confidence 99997
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.6e-39 Score=260.94 Aligned_cols=276 Identities=21% Similarity=0.338 Sum_probs=238.0
Q ss_pred CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe
Q 038533 20 SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS 97 (337)
Q Consensus 20 ~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~ 97 (337)
....|++++|+ |..||+|+. ||.++||+.+... .. . ...|.++|.+++|+..+. +|+++
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~----~G~~riw~~~G~l--~~---t-l~~HkgPI~slKWnk~G~---------yilS~ 294 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSE----DGEARIWNKDGNL--IS---T-LGQHKGPIFSLKWNKKGT---------YILSG 294 (524)
T ss_pred ccCCcceEEecCCCCeEEEeec----CcEEEEEecCchh--hh---h-hhccCCceEEEEEcCCCC---------EEEec
Confidence 34679999999 999999996 9999998876432 22 2 268999999999999999 88888
Q ss_pred C-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEE
Q 038533 98 G-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDI 175 (337)
Q Consensus 98 ~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~ 175 (337)
+ | ++.+||..++ ...+.+..|. .+-.++.|- +...|++++.|+.|+|+.+....++.++.+|.++|.++
T Consensus 295 ~vD~ttilwd~~~g--~~~q~f~~~s-----~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al 365 (524)
T KOG0273|consen 295 GVDGTTILWDAHTG--TVKQQFEFHS-----APALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL 365 (524)
T ss_pred cCCccEEEEeccCc--eEEEeeeecc-----CCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEE
Confidence 8 7 9999999999 5666777776 666789996 56889999999999999999999999999999999999
Q ss_pred EeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecC--------CCcEEEEEEecCCEEEEEECCC
Q 038533 176 CWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQ--------DLRYMATILMDSNKVVILDIRS 246 (337)
Q Consensus 176 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~l~~~~~d~~~i~i~d~~~ 246 (337)
.|+ .+.+|++++.|++++||..........+. .|...|+.+.|+|. .+..+++++.|+. |++||+..
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~---~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~ 441 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ---AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVES 441 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCCcchhhhh---hhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccC
Confidence 999 59999999999999999988776444433 46788898988873 3557899999998 99999998
Q ss_pred CCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEE
Q 038533 247 PTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAI 326 (337)
Q Consensus 247 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 326 (337)
+.++..+..|..+|.+++|+|+|+ ++|+|+.||.|.+|+.+.++ .+....-.+.|..++|+.+|..+.++
T Consensus 442 -gv~i~~f~kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~~--------l~~s~~~~~~Ifel~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 442 -GVPIHTLMKHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTGK--------LVKSYQGTGGIFELCWNAAGDKLGAC 511 (524)
T ss_pred -CceeEeeccCCCceEEEEecCCCc-EEEecCCCCeeEeccccchh--------eeEeecCCCeEEEEEEcCCCCEEEEE
Confidence 788999999999999999999999 99999999999999999333 45555667789999999999888888
Q ss_pred EcCCcEEEEeC
Q 038533 327 AFSNKMQLLKV 337 (337)
Q Consensus 327 ~~d~~i~iw~l 337 (337)
..|+.+.+.++
T Consensus 512 ~sd~~vcvldl 522 (524)
T KOG0273|consen 512 ASDGSVCVLDL 522 (524)
T ss_pred ecCCCceEEEe
Confidence 89999998764
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-39 Score=245.37 Aligned_cols=243 Identities=20% Similarity=0.318 Sum_probs=213.3
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCc---cceeeecCCCCCcccCCeeEEEeecCCCCe
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSI---EPVAVLNNSKSSEFCAPLTSFDWNEIEPKR 141 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 141 (337)
.+|++.|+.++..+.+. .++.+++ | ++.+|++...+. .+++.+.+|. ..|..++.++ ++++
T Consensus 12 ~gh~d~Vt~la~~~~~~--------~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHs-----H~v~dv~~s~-dg~~ 77 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNS--------DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHS-----HFVSDVVLSS-DGNF 77 (315)
T ss_pred cCCCceEEEEEeecCCC--------ceEEEcccceEEEEEEeccCccccCceeeeeeccc-----eEecceEEcc-CCce
Confidence 78999999999999876 6888888 6 999999976543 4588899998 8999999998 9999
Q ss_pred EEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEE
Q 038533 142 IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLA 220 (337)
Q Consensus 142 l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~ 220 (337)
.++++.|+.+++||+.+++..+.|.+|...|.+++|+ +++.+++|+.|.+|++|+........... . .+...|.|+.
T Consensus 78 alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~-~-~~~~WVscvr 155 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE-D-SHREWVSCVR 155 (315)
T ss_pred EEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec-C-CCcCcEEEEE
Confidence 9999999999999999999999999999999999999 89999999999999999998765333322 2 2378999999
Q ss_pred eecCC-CcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 038533 221 WNKQD-LRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGI 299 (337)
Q Consensus 221 ~~~~~-~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 299 (337)
|+|.. ..++++++.|+. |++||+++ .+....+.+|.+.++.++++|||. ++++|+.||.+.+||++.++
T Consensus 156 fsP~~~~p~Ivs~s~Dkt-vKvWnl~~-~~l~~~~~gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k------- 225 (315)
T KOG0279|consen 156 FSPNESNPIIVSASWDKT-VKVWNLRN-CQLRTTFIGHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGK------- 225 (315)
T ss_pred EcCCCCCcEEEEccCCce-EEEEccCC-cchhhccccccccEEEEEECCCCC-EEecCCCCceEEEEEccCCc-------
Confidence 99933 778999999998 99999998 667788999999999999999999 99999999999999999322
Q ss_pred CceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 300 DPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 300 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
......|...|.+++|+|+. +.++.+.+..|+||++
T Consensus 226 -~lysl~a~~~v~sl~fspnr-ywL~~at~~sIkIwdl 261 (315)
T KOG0279|consen 226 -NLYSLEAFDIVNSLCFSPNR-YWLCAATATSIKIWDL 261 (315)
T ss_pred -eeEeccCCCeEeeEEecCCc-eeEeeccCCceEEEec
Confidence 45667899999999999997 6777777788999985
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-39 Score=260.28 Aligned_cols=290 Identities=19% Similarity=0.314 Sum_probs=246.3
Q ss_pred cceeeeeCCCceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCcceec----CCC-----cCCCCCCCCeEEEecC
Q 038533 13 ENSVTHESPYPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIKT----HPS-----LSFDHPYPPTKLMFDP 80 (337)
Q Consensus 13 ~~~~~~~~~~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~----~~~-----~~~~~~~~i~~i~~~~ 80 (337)
.....+.|..+|.+.+|+ ...||+|+. +-..++|++......... +.. .....+..|++++|+.
T Consensus 170 ~~~kvl~~~~~V~~~~WnP~~~~llasg~~----~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~ 245 (524)
T KOG0273|consen 170 SKAKVLRHESEVFICAWNPLRDGLLASGSG----DSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNN 245 (524)
T ss_pred cceeeccCCCceEEEecCchhhhhhhccCC----ccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecC
Confidence 334455689999999999 458999986 999999998752221111 000 0123457899999999
Q ss_pred CCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCC
Q 038533 81 NSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEK 158 (337)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 158 (337)
+|. +||+|+ + .+++|+.... +..++..|+ +||.++.|+. .+++|++++.|+++.+||..+
T Consensus 246 ~G~---------~LatG~~~G~~riw~~~G~---l~~tl~~Hk-----gPI~slKWnk-~G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 246 DGT---------LLATGSEDGEARIWNKDGN---LISTLGQHK-----GPIFSLKWNK-KGTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred CCC---------eEEEeecCcEEEEEecCch---hhhhhhccC-----CceEEEEEcC-CCCEEEeccCCccEEEEeccC
Confidence 999 999998 5 9999998875 778889999 9999999998 999999999999999999999
Q ss_pred ccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCE
Q 038533 159 GVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNK 238 (337)
Q Consensus 159 ~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~ 238 (337)
++....+..|+.+-.++.|-+...|++++.|+.|+++.+........+. +|.++|.++.|+| .+.+|++++.|++
T Consensus 308 g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~---GH~g~V~alk~n~-tg~LLaS~SdD~T- 382 (524)
T KOG0273|consen 308 GTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFI---GHHGEVNALKWNP-TGSLLASCSDDGT- 382 (524)
T ss_pred ceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeee---cccCceEEEEECC-CCceEEEecCCCe-
Confidence 9988888888888788999988899999999999999998877554443 3789999999999 9999999999999
Q ss_pred EEEEECCCCCCCeEEeecccceeeEEEeCCCCC--------CeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCc
Q 038533 239 VVILDIRSPTLPVAELERHRACVNAIAWAPQSR--------RHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSE 310 (337)
Q Consensus 239 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 310 (337)
++||.... ......+.+|...|..+.|+|.|+ ..+++++.|++|++||+..+ .....+..|..+
T Consensus 383 lkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-------v~i~~f~kH~~p 454 (524)
T KOG0273|consen 383 LKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-------VPIHTLMKHQEP 454 (524)
T ss_pred eEeeecCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-------ceeEeeccCCCc
Confidence 99999887 556888999999999999999764 37999999999999999932 334577799999
Q ss_pred eeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 311 INQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 311 v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
|.+++|+|+|+++++++.||.|.||++
T Consensus 455 VysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 455 VYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred eEEEEecCCCcEEEecCCCCeeEeccc
Confidence 999999999999999999999999974
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-38 Score=242.48 Aligned_cols=279 Identities=16% Similarity=0.243 Sum_probs=238.6
Q ss_pred eeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 18 HESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 18 ~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
..|++.|+.+.|+ |.+||+|+. |..|.+|+...+.+.+-. ..+|.++|..+.|.+|+. .++
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~----Dr~I~LWnv~gdceN~~~----lkgHsgAVM~l~~~~d~s---------~i~ 106 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGS----DRAIVLWNVYGDCENFWV----LKGHSGAVMELHGMRDGS---------HIL 106 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCC----cceEEEEeccccccceee----eccccceeEeeeeccCCC---------EEE
Confidence 4568999999999 999999997 999999997665555443 379999999999999999 777
Q ss_pred EeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCcee
Q 038533 96 SSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVY 173 (337)
Q Consensus 96 ~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~ 173 (337)
+++ | +|+.||++++ +..+.+++|. .-|..+.-+.....++.+|+.|+++++||+++...++++. ...+++
T Consensus 107 S~gtDk~v~~wD~~tG--~~~rk~k~h~-----~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqlt 178 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETG--KRIRKHKGHT-----SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLT 178 (338)
T ss_pred EecCCceEEEEecccc--eeeehhcccc-----ceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEE
Confidence 776 6 9999999999 7888999998 8888888555456789999999999999999998888876 456899
Q ss_pred EEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCC---C
Q 038533 174 DICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT---L 249 (337)
Q Consensus 174 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~---~ 249 (337)
++.|. .+..+.+|+-|+.|++||++.......+ .+|..+|+.+..+| ++.++.+-+.|.. +++||++... +
T Consensus 179 Av~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~l---sGh~DtIt~lsls~-~gs~llsnsMd~t-vrvwd~rp~~p~~R 253 (338)
T KOG0265|consen 179 AVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTL---SGHADTITGLSLSR-YGSFLLSNSMDNT-VRVWDVRPFAPSQR 253 (338)
T ss_pred EEEecccccceeeccccCceeeeccccCcceEEe---ecccCceeeEEecc-CCCccccccccce-EEEEEecccCCCCc
Confidence 99999 7899999999999999999998854443 35889999999999 9999999999998 9999998532 3
Q ss_pred CeEEeecccc----eeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEE
Q 038533 250 PVAELERHRA----CVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLA 325 (337)
Q Consensus 250 ~~~~~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 325 (337)
++..+.+|.. ....++|+|++. .+.+|+.|..+++||.. .. ...+.+.+|.+.|++++|+|..+.+++
T Consensus 254 ~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~--~r-----~~lyklpGh~gsvn~~~Fhp~e~iils 325 (338)
T KOG0265|consen 254 CVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTT--SR-----RILYKLPGHYGSVNEVDFHPTEPIILS 325 (338)
T ss_pred eEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeecc--cc-----cEEEEcCCcceeEEEeeecCCCcEEEE
Confidence 3666666543 446789999999 99999999999999998 31 235678899999999999999999999
Q ss_pred EEcCCcEEE
Q 038533 326 IAFSNKMQL 334 (337)
Q Consensus 326 ~~~d~~i~i 334 (337)
++.|.+|.+
T Consensus 326 ~~sdk~i~l 334 (338)
T KOG0265|consen 326 CSSDKTIYL 334 (338)
T ss_pred eccCceeEe
Confidence 999999876
No 16
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=6.4e-39 Score=251.04 Aligned_cols=293 Identities=18% Similarity=0.287 Sum_probs=244.6
Q ss_pred cCCccceeeeeCCCceeEEEEecceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCc
Q 038533 9 HLRSENSVTHESPYPLYAMAVCGQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSS 88 (337)
Q Consensus 9 ~~~~~~~~~~~~~~~v~~~~~s~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 88 (337)
-.+++++..+.|++-|.++.-.++.|++|+. ||.++||+...... .. ..+|.++|.+++|.-.+.
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~~~~IltgsY----Dg~~riWd~~Gk~~-~~-----~~Ght~~ik~v~~v~~n~----- 157 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGASKWILTGSY----DGTSRIWDLKGKSI-KT-----IVGHTGPIKSVAWVIKNS----- 157 (423)
T ss_pred cCCCCccccccchhhhhhhcccCceEEEeec----CCeeEEEecCCceE-EE-----EecCCcceeeeEEEecCC-----
Confidence 3567788888999999999888999999996 99999998765432 22 279999999998865544
Q ss_pred CCccEEEEeC-C-eEEEEecCCCCc--cceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCC------
Q 038533 89 SNRHLLASSG-D-FLRLWDVGDSSI--EPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEK------ 158 (337)
Q Consensus 89 ~~~~~l~~~~-~-~v~vw~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~------ 158 (337)
....|++++ | ++++|.++.++. +......||+ ..|-+++..+ ++..+++|+.|..|.+|+..+
T Consensus 158 -~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk-----~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~ 230 (423)
T KOG0313|consen 158 -SSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK-----RSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDEL 230 (423)
T ss_pred -ccceEEEecCCceEEEEEecCchhhhhHHhHhcccc-----cceeEEEecC-CCCeEEeecccceeeecccCCCccccc
Confidence 012577877 6 999999887753 3334445888 9999999998 999999999999999999321
Q ss_pred -------------------ccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEE
Q 038533 159 -------------------GVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRL 219 (337)
Q Consensus 159 -------------------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~ 219 (337)
+.++..+.+|..+|.++.|++...+++++.|.+|+.||+.+++....+... ..+.++
T Consensus 231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~----ksl~~i 306 (423)
T KOG0313|consen 231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN----KSLNCI 306 (423)
T ss_pred cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecC----cceeEe
Confidence 124455678999999999998889999999999999999999876666544 789999
Q ss_pred EeecCCCcEEEEEEecCCEEEEEECCCCC--CCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCC
Q 038533 220 AWNKQDLRYMATILMDSNKVVILDIRSPT--LPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPN 297 (337)
Q Consensus 220 ~~~~~~~~~l~~~~~d~~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 297 (337)
..+| ..++|++|+.|.. +++||.|++. .+.+.+.+|...|.++.|+|...++|++|+.|+++++||++..+ .
T Consensus 307 ~~~~-~~~Ll~~gssdr~-irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--~-- 380 (423)
T KOG0313|consen 307 SYSP-LSKLLASGSSDRH-IRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--A-- 380 (423)
T ss_pred eccc-ccceeeecCCCCc-eeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--C--
Confidence 9999 9999999999999 9999999864 34567889999999999999999899999999999999999332 2
Q ss_pred CCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 298 GIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 298 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
..+.+.+|.+.|.++.|+..+ .+++++.|++|+|++
T Consensus 381 --plydI~~h~DKvl~vdW~~~~-~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 381 --PLYDIAGHNDKVLSVDWNEGG-LIVSGGADNKLRIFK 416 (423)
T ss_pred --cceeeccCCceEEEEeccCCc-eEEeccCcceEEEec
Confidence 256788999999999999766 799999999999985
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.3e-39 Score=249.80 Aligned_cols=281 Identities=18% Similarity=0.279 Sum_probs=245.4
Q ss_pred eeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 18 HESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 18 ~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
..+..+|+.+-|+ -...++++. |.+|++||+.....+- .+ .+|.+.+..|+|+..|+ +||
T Consensus 105 ~g~r~~vt~v~~hp~~~~v~~as~----d~tikv~D~~tg~~e~----~L-rGHt~sv~di~~~a~Gk---------~l~ 166 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEALVVSASE----DATIKVFDTETGELER----SL-RGHTDSVFDISFDASGK---------YLA 166 (406)
T ss_pred hccccceeeeeeccCceEEEEecC----CceEEEEEccchhhhh----hh-hccccceeEEEEecCcc---------EEE
Confidence 3467788888888 556667764 9999999887655422 23 89999999999999999 999
Q ss_pred EeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCcee
Q 038533 96 SSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVY 173 (337)
Q Consensus 96 ~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~ 173 (337)
+++ | .+++||..+. .++++.+.+|. ..|.++.|-| .++++++++.|.+|+.|++.++-++.++.+|...|.
T Consensus 167 tcSsDl~~~LWd~~~~-~~c~ks~~gh~-----h~vS~V~f~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr 239 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTF-FRCIKSLIGHE-----HGVSSVFFLP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR 239 (406)
T ss_pred ecCCccchhheeHHHH-HHHHHHhcCcc-----cceeeEEEEe-cCCeeeecccccceeEEecccceeEEeccCchHhEE
Confidence 998 6 7999999885 47888899998 8999999999 889999999999999999999999999999999999
Q ss_pred EEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecC--------------CCcEEEEEEecCCE
Q 038533 174 DICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQ--------------DLRYMATILMDSNK 238 (337)
Q Consensus 174 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------~~~~l~~~~~d~~~ 238 (337)
.++.+ ++.++++++.|.++++|-+.++++...+. .|+-++.+++|.|. .+.++.+++.|+.
T Consensus 240 ~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR---~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt- 315 (406)
T KOG0295|consen 240 MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR---EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT- 315 (406)
T ss_pred EEEecCCeeEEEecCCCceEEEEEeccchhhhhhh---ccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-
Confidence 99999 99999999999999999999986544433 36778999999773 2358999999998
Q ss_pred EEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEcc
Q 038533 239 VVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSP 318 (337)
Q Consensus 239 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 318 (337)
|++||+.+ +.++.++.+|...|..++|+|.|+ ||+++.+|+++++||++ ... ....+..|..-+++++|+.
T Consensus 316 Ik~wdv~t-g~cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDktlrvwdl~--~~~-----cmk~~~ah~hfvt~lDfh~ 386 (406)
T KOG0295|consen 316 IKIWDVST-GMCLFTLVGHDNWVRGVAFSPGGK-YILSCADDKTLRVWDLK--NLQ-----CMKTLEAHEHFVTSLDFHK 386 (406)
T ss_pred EEEEeccC-CeEEEEEecccceeeeeEEcCCCe-EEEEEecCCcEEEEEec--cce-----eeeccCCCcceeEEEecCC
Confidence 99999999 678999999999999999999999 99999999999999999 422 2335567888999999999
Q ss_pred CCCceEEEEcCCcEEEEe
Q 038533 319 AQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 319 ~~~~l~~~~~d~~i~iw~ 336 (337)
+.+++++|+-|..+++|.
T Consensus 387 ~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 387 TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred CCceEEeccccceeeeee
Confidence 999999999999999996
No 18
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.3e-38 Score=239.20 Aligned_cols=247 Identities=18% Similarity=0.290 Sum_probs=216.7
Q ss_pred eeeeeC-CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCC--CcceecCCCcCCCCCCCCeEEEecCCCCcccCcC
Q 038533 15 SVTHES-PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPE--SLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSS 89 (337)
Q Consensus 15 ~~~~~~-~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~ 89 (337)
.+.++. ..-|.++||+ ++++|+|+- |+...||++... .+.......+ .+|.+.+.|+.|-+|+.
T Consensus 90 ~haipl~s~WVMtCA~sPSg~~VAcGGL----dN~Csiy~ls~~d~~g~~~v~r~l-~gHtgylScC~f~dD~~------ 158 (343)
T KOG0286|consen 90 VHAIPLPSSWVMTCAYSPSGNFVACGGL----DNKCSIYPLSTRDAEGNVRVSREL-AGHTGYLSCCRFLDDNH------ 158 (343)
T ss_pred eeEEecCceeEEEEEECCCCCeEEecCc----CceeEEEecccccccccceeeeee-cCccceeEEEEEcCCCc------
Confidence 344444 3459999999 999999998 999999999855 2223322233 89999999999999875
Q ss_pred CccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhcc
Q 038533 90 NRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAH 168 (337)
Q Consensus 90 ~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 168 (337)
+|.+++| ++.+||++++ +....+.+|. +.|.+++++|.+++.+++|+-|+..++||++.+.++++|.+|
T Consensus 159 ---ilT~SGD~TCalWDie~g--~~~~~f~GH~-----gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh 228 (343)
T KOG0286|consen 159 ---ILTGSGDMTCALWDIETG--QQTQVFHGHT-----GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH 228 (343)
T ss_pred ---eEecCCCceEEEEEcccc--eEEEEecCCc-----ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccc
Confidence 6666667 9999999999 7889999999 999999999989999999999999999999999999999999
Q ss_pred CCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCC
Q 038533 169 DKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP 247 (337)
Q Consensus 169 ~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~ 247 (337)
+..|++++|. +|.-|++|+.|+++++||+|..+.... +.......+|++++|+. .|++|++|..|.+ +.+||.-.
T Consensus 229 esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~-ys~~~~~~gitSv~FS~-SGRlLfagy~d~~-c~vWDtlk- 304 (343)
T KOG0286|consen 229 ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV-YSHDSIICGITSVAFSK-SGRLLFAGYDDFT-CNVWDTLK- 304 (343)
T ss_pred ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee-eccCcccCCceeEEEcc-cccEEEeeecCCc-eeEeeccc-
Confidence 9999999999 699999999999999999999875544 44445668999999998 9999999999998 99999987
Q ss_pred CCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEe
Q 038533 248 TLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWE 287 (337)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 287 (337)
++.+..+.+|...|+++..+|+|. .+++|+.|..++||.
T Consensus 305 ~e~vg~L~GHeNRvScl~~s~DG~-av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 305 GERVGVLAGHENRVSCLGVSPDGM-AVATGSWDSTLRIWA 343 (343)
T ss_pred cceEEEeeccCCeeEEEEECCCCc-EEEecchhHheeecC
Confidence 566888999999999999999999 999999999999994
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.2e-38 Score=265.62 Aligned_cols=279 Identities=15% Similarity=0.233 Sum_probs=244.0
Q ss_pred CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC
Q 038533 21 PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG 98 (337)
Q Consensus 21 ~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~ 98 (337)
+..|+|.+|+ -+.||+|-. .|...+|++......... .-...+|..+.|+..|. .+|.|+
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~L-----Sis~~~I~t~~~N~tGD---------WiA~g~ 326 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSL-----SISDQKILTVSFNSTGD---------WIAFGC 326 (893)
T ss_pred ccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEe-----ecccceeeEEEecccCC---------EEEEcC
Confidence 4789999999 678888886 899999988866554443 33457799999999998 999988
Q ss_pred C---eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEE
Q 038533 99 D---FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDI 175 (337)
Q Consensus 99 ~---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~ 175 (337)
. .+-||+++.. ..+...++|. ..+++++++| +++++++|++||.|+|||..++-+..++..|...|+.+
T Consensus 327 ~klgQLlVweWqsE--sYVlKQQgH~-----~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v 398 (893)
T KOG0291|consen 327 SKLGQLLVWEWQSE--SYVLKQQGHS-----DRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAV 398 (893)
T ss_pred CccceEEEEEeecc--ceeeeccccc-----cceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEE
Confidence 4 9999999998 5677778888 9999999999 99999999999999999999999999999999999999
Q ss_pred EeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEe
Q 038533 176 CWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAEL 254 (337)
Q Consensus 176 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 254 (337)
.|+ .++.+++.+-||+|+.||+...+.-+.+... ......|++..| .|.++.+|+.|.-.|.+|++++ ++.+..+
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P--~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qT-GqllDiL 474 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP--EPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQT-GQLLDIL 474 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeecccceeeeecCC--CceeeeEEEEcC-CCCEEEeeccceEEEEEEEeec-Ceeeehh
Confidence 999 8999999999999999999988766555433 345678899998 8999999999988899999999 7889999
Q ss_pred ecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEE
Q 038533 255 ERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQL 334 (337)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 334 (337)
.+|.++|.+++|+|.+. .|++++.|.+|++||+-... . ......+...+..++|+|+|+.++.+.-||.|.+
T Consensus 475 sGHEgPVs~l~f~~~~~-~LaS~SWDkTVRiW~if~s~--~-----~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf 546 (893)
T KOG0291|consen 475 SGHEGPVSGLSFSPDGS-LLASGSWDKTVRIWDIFSSS--G-----TVETLEIRSDVLAVSFRPDGKELAVATLDGQITF 546 (893)
T ss_pred cCCCCcceeeEEccccC-eEEeccccceEEEEEeeccC--c-----eeeeEeeccceeEEEEcCCCCeEEEEEecceEEE
Confidence 99999999999999999 99999999999999998322 1 2344456778999999999999999999999999
Q ss_pred EeC
Q 038533 335 LKV 337 (337)
Q Consensus 335 w~l 337 (337)
|++
T Consensus 547 ~d~ 549 (893)
T KOG0291|consen 547 FDI 549 (893)
T ss_pred EEh
Confidence 984
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.6e-38 Score=272.11 Aligned_cols=281 Identities=19% Similarity=0.328 Sum_probs=238.6
Q ss_pred CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC
Q 038533 21 PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG 98 (337)
Q Consensus 21 ~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~ 98 (337)
...|.++.|+ |+.|++++. ++.+++|+.......... .+ .+|...|.+++|+|++. ++++++
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~----~~~i~~~~~~~~~~~~~~--~l-~~h~~~v~~~~fs~d~~---------~l~s~s 222 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASS----DGLIRIWKLEGIKSNLLR--EL-SGHTRGVSDVAFSPDGS---------YLLSGS 222 (456)
T ss_pred cCceEEEEEcCCCCeEEEccC----CCcEEEeecccccchhhc--cc-cccccceeeeEECCCCc---------EEEEec
Confidence 5789999999 899999987 999999998544421111 22 78999999999999999 999998
Q ss_pred -C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEE
Q 038533 99 -D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDIC 176 (337)
Q Consensus 99 -~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~ 176 (337)
| +|+|||+.... ..++++.+|. ..|++++|+| .++++++|+.|++|++||+++++++..+.+|.+.|++++
T Consensus 223 ~D~tiriwd~~~~~-~~~~~l~gH~-----~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 223 DDKTLRIWDLKDDG-RNLKTLKGHS-----TYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLA 295 (456)
T ss_pred CCceEEEeeccCCC-eEEEEecCCC-----CceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEE
Confidence 5 99999993332 6889999999 9999999999 789999999999999999999999999999999999999
Q ss_pred eC-CCcEEEEEcCCCeEEEEECCCCCC--ceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEE
Q 038533 177 WG-EARVFASVSADGSVRIFDLRDKEH--STIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAE 253 (337)
Q Consensus 177 ~~-~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 253 (337)
|+ ++++|++++.|+.|++||+.++.. ...+....... ++++++|+| ++.++++++.|+. +++||++. ......
T Consensus 296 f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp-~~~~ll~~~~d~~-~~~w~l~~-~~~~~~ 371 (456)
T KOG0266|consen 296 FSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSP-NGKYLLSASLDRT-LKLWDLRS-GKSVGT 371 (456)
T ss_pred ECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECC-CCcEEEEecCCCe-EEEEEccC-Ccceee
Confidence 99 899999999999999999999983 33433332223 799999999 9999999999998 99999998 556777
Q ss_pred eecccce---eeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeC-CCceeEEEEccCCCceEEEE--
Q 038533 254 LERHRAC---VNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSA-GSEINQLQWSPAQPDWLAIA-- 327 (337)
Q Consensus 254 ~~~~~~~---v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-- 327 (337)
+.+|... +.+...++.+. ++++|+.|+.|++|+.. +. .....+.+| ...+..++|+|..+++++.+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~--s~-----~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~ 443 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSS--SG-----GILQRLEGHSKAAVSDLSSHPTENLIASSSFE 443 (456)
T ss_pred ecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCC--cc-----chhhhhcCCCCCceeccccCCCcCeeeecCcC
Confidence 7777764 44455677888 99999999999999999 42 224567778 88999999999998888877
Q ss_pred cCCcEEEEe
Q 038533 328 FSNKMQLLK 336 (337)
Q Consensus 328 ~d~~i~iw~ 336 (337)
.|+.+++|+
T Consensus 444 ~d~~~~~w~ 452 (456)
T KOG0266|consen 444 GDGLIRLWK 452 (456)
T ss_pred CCceEEEec
Confidence 699999996
No 21
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.3e-38 Score=269.31 Aligned_cols=279 Identities=20% Similarity=0.298 Sum_probs=234.6
Q ss_pred ceeeeeC-CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCc-------ceec-------------------CCC
Q 038533 14 NSVTHES-PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESL-------SIKT-------------------HPS 64 (337)
Q Consensus 14 ~~~~~~~-~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~-------~~~~-------------------~~~ 64 (337)
.++++.. ...+.|..|+ +.+||.|.. |..|++|.+..... .+.. ...
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~----dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~ 445 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFV----DSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSR 445 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhcccc----ccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeE
Confidence 4455544 6789999999 788888887 99999999884220 0000 001
Q ss_pred cCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeE
Q 038533 65 LSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRI 142 (337)
Q Consensus 65 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 142 (337)
...+|.++|..+.|+|+.+ +|++|+ | ++|+|.+.+. .++..+++|. .||.++.|+| .|.+|
T Consensus 446 ~L~GH~GPVyg~sFsPd~r---------fLlScSED~svRLWsl~t~--s~~V~y~GH~-----~PVwdV~F~P-~GyYF 508 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRR---------FLLSCSEDSSVRLWSLDTW--SCLVIYKGHL-----APVWDVQFAP-RGYYF 508 (707)
T ss_pred EeecCCCceeeeeeccccc---------ceeeccCCcceeeeecccc--eeEEEecCCC-----cceeeEEecC-CceEE
Confidence 1368999999999999999 999998 5 9999999998 7888899998 9999999999 89999
Q ss_pred EEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEe
Q 038533 143 GTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAW 221 (337)
Q Consensus 143 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~ 221 (337)
|+++.|++.++|......+++.+.+|-+.|.|+.|+ +.+++++|+.|.++++||..++...+.+ .+|.++|.+++|
T Consensus 509 atas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF---~GH~~~V~al~~ 585 (707)
T KOG0263|consen 509 ATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF---TGHKGPVTALAF 585 (707)
T ss_pred EecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEe---cCCCCceEEEEE
Confidence 999999999999999999999999999999999999 6899999999999999999999865554 358999999999
Q ss_pred ecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCC-------
Q 038533 222 NKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVA------- 294 (337)
Q Consensus 222 ~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~------- 294 (337)
+| +|++|++|+.|+. |.+||+.+ +.++..+.+|.+.|.++.|+.+|. +||+|+.|.+|++||+......
T Consensus 586 Sp-~Gr~LaSg~ed~~-I~iWDl~~-~~~v~~l~~Ht~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~~~~~~~~~~~ 661 (707)
T KOG0263|consen 586 SP-CGRYLASGDEDGL-IKIWDLAN-GSLVKQLKGHTGTIYSLSFSRDGN-VLASGGADNSVRLWDLTKVIELLNLGHIS 661 (707)
T ss_pred cC-CCceEeecccCCc-EEEEEcCC-CcchhhhhcccCceeEEEEecCCC-EEEecCCCCeEEEEEchhhcccccccccc
Confidence 99 9999999999999 99999998 677889999999999999999999 9999999999999999833222
Q ss_pred -------CCCCC---CceeeeeCCCceeEEEEccCC
Q 038533 295 -------GPNGI---DPMSMYSAGSEINQLQWSPAQ 320 (337)
Q Consensus 295 -------~~~~~---~~~~~~~~~~~v~~~~~~~~~ 320 (337)
++.+. ....+..-..+|..+.|....
T Consensus 662 ~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN 697 (707)
T KOG0263|consen 662 TSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN 697 (707)
T ss_pred cccccccccCCCCcceeeeeeecCceEEEEEEeccc
Confidence 00001 111334455688888888766
No 22
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-38 Score=247.45 Aligned_cols=282 Identities=16% Similarity=0.207 Sum_probs=243.6
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.|.+-|.|+++. ..+|++|+. |++++|||+......... .+|...|..+++|+-.+ ++.+
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~----DrtikIwDlatg~Lkltl-----tGhi~~vr~vavS~rHp---------YlFs 210 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSA----DRTIKIWDLATGQLKLTL-----TGHIETVRGVAVSKRHP---------YLFS 210 (460)
T ss_pred hccceEEEEeeCCCceeEEecCC----CceeEEEEcccCeEEEee-----cchhheeeeeeecccCc---------eEEE
Confidence 357889999999 899999998 999999999877655554 78999999999999999 8888
Q ss_pred eC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeE
Q 038533 97 SG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 97 ~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
++ | .|+.||+... +.++.+.+|- +.|.|++.+| .-+.|++|+.|.+++|||+++...+..+.+|..+|..
T Consensus 211 ~gedk~VKCwDLe~n--kvIR~YhGHl-----S~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~ 282 (460)
T KOG0285|consen 211 AGEDKQVKCWDLEYN--KVIRHYHGHL-----SGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVAS 282 (460)
T ss_pred ecCCCeeEEEechhh--hhHHHhcccc-----ceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCccee
Confidence 77 5 9999999999 7889999998 9999999999 8899999999999999999999999999999999999
Q ss_pred EEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEE
Q 038533 175 ICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAE 253 (337)
Q Consensus 175 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 253 (337)
+.+. -+..+++|+.|++|++||++.++....+. .|+..+.+++.+| ....+++++.|. |+-|++.. +..+..
T Consensus 283 V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt---~hkksvral~lhP-~e~~fASas~dn--ik~w~~p~-g~f~~n 355 (460)
T KOG0285|consen 283 VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLT---HHKKSVRALCLHP-KENLFASASPDN--IKQWKLPE-GEFLQN 355 (460)
T ss_pred EEeecCCCceEEecCCceEEEeeeccCceeEeee---cccceeeEEecCC-chhhhhccCCcc--ceeccCCc-cchhhc
Confidence 9999 46689999999999999999998544433 5788999999999 889999998886 99999988 556777
Q ss_pred eecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCC--CCceeeeeCCCceeEEEEccCCCceEEEEcCCc
Q 038533 254 LERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNG--IDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNK 331 (337)
Q Consensus 254 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 331 (337)
+.+|..-|++++.+.|+ ++++|++.|.+.+||.+.+...+... ..|- ....+..|.+.+|...|..|+++..|.+
T Consensus 356 lsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpG-Sl~sEagI~as~fDktg~rlit~eadKt 432 (460)
T KOG0285|consen 356 LSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPG-SLESEAGIFASCFDKTGSRLITGEADKT 432 (460)
T ss_pred cccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccccccccCC-ccccccceeEEeecccCceEEeccCCcc
Confidence 99999999999999887 79999999999999999554333110 0010 1123557999999999999999999999
Q ss_pred EEEEe
Q 038533 332 MQLLK 336 (337)
Q Consensus 332 i~iw~ 336 (337)
|++|+
T Consensus 433 Ik~~k 437 (460)
T KOG0285|consen 433 IKMYK 437 (460)
T ss_pred eEEEe
Confidence 99996
No 23
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.8e-37 Score=285.00 Aligned_cols=292 Identities=17% Similarity=0.287 Sum_probs=231.1
Q ss_pred CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCc--ceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 20 SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESL--SIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 20 ~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
|...|.+++|+ +++||+|+. |+.|+||+...... ...........+...|.+++|+|... .+|+
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~----D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~--------~~la 549 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGV----NKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIK--------SQVA 549 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeC----CCEEEEEECCcccccccccccceEEecccCceeeEEeccCCC--------CEEE
Confidence 67889999999 899999997 99999999754211 00000011134456899999998643 3888
Q ss_pred EeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCcee
Q 038533 96 SSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVY 173 (337)
Q Consensus 96 ~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~ 173 (337)
+++ | +|++||+.++ +.+..+.+|. ..|++++|+|.++.+|++|+.||.|++||++++..+..+..+ ..+.
T Consensus 550 s~~~Dg~v~lWd~~~~--~~~~~~~~H~-----~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~ 621 (793)
T PLN00181 550 SSNFEGVVQVWDVARS--QLVTEMKEHE-----KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANIC 621 (793)
T ss_pred EEeCCCeEEEEECCCC--eEEEEecCCC-----CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeE
Confidence 887 5 9999999988 6778888888 999999999767899999999999999999998877777644 6789
Q ss_pred EEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCC----
Q 038533 174 DICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP---- 247 (337)
Q Consensus 174 ~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~---- 247 (337)
++.|+ ++.+|++|+.||.|++||++..+...... ..|...|.++.|. ++.+|++++.|+. |++||++..
T Consensus 622 ~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~--~~h~~~V~~v~f~--~~~~lvs~s~D~~-ikiWd~~~~~~~~ 696 (793)
T PLN00181 622 CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM--IGHSKTVSYVRFV--DSSTLVSSSTDNT-LKLWDLSMSISGI 696 (793)
T ss_pred EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe--cCCCCCEEEEEEe--CCCEEEEEECCCE-EEEEeCCCCcccc
Confidence 99996 58999999999999999998765322222 2477899999996 6789999999998 999999853
Q ss_pred -CCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCC---CCCCc---eeeeeCCCceeEEEEccCC
Q 038533 248 -TLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGP---NGIDP---MSMYSAGSEINQLQWSPAQ 320 (337)
Q Consensus 248 -~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---~~~~~---~~~~~~~~~v~~~~~~~~~ 320 (337)
..++..+.+|...+..++|+|++. +|++|+.|+.|++|+...+..... ..... .....+...|.+++|+|++
T Consensus 697 ~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~ 775 (793)
T PLN00181 697 NETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS 775 (793)
T ss_pred CCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence 256788999999999999999998 999999999999999863211000 00000 1123456679999999999
Q ss_pred CceEEEEcCCcEEEEeC
Q 038533 321 PDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 321 ~~l~~~~~d~~i~iw~l 337 (337)
..|++++.||.|+||++
T Consensus 776 ~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 776 STLVAANSTGNIKILEM 792 (793)
T ss_pred CeEEEecCCCcEEEEec
Confidence 99999999999999986
No 24
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-38 Score=247.53 Aligned_cols=273 Identities=17% Similarity=0.274 Sum_probs=228.9
Q ss_pred CCceeEEEEecceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C
Q 038533 21 PYPLYAMAVCGQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D 99 (337)
Q Consensus 21 ~~~v~~~~~s~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~ 99 (337)
...|+|+.+....+++|.. |++|+|||.+....... ..+|++.|.|+.|. .+ ++++|+ |
T Consensus 197 skgVYClQYDD~kiVSGlr----DnTikiWD~n~~~c~~~-----L~GHtGSVLCLqyd--~r---------viisGSSD 256 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLR----DNTIKIWDKNSLECLKI-----LTGHTGSVLCLQYD--ER---------VIVSGSSD 256 (499)
T ss_pred CCceEEEEecchhhhcccc----cCceEEeccccHHHHHh-----hhcCCCcEEeeecc--ce---------EEEecCCC
Confidence 4679999999888999997 99999998765433322 38999999999985 44 888887 6
Q ss_pred -eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc---chhhhhccCCceeEE
Q 038533 100 -FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV---VETQLIAHDKEVYDI 175 (337)
Q Consensus 100 -~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~~~~v~~~ 175 (337)
+|+|||++++ +++.++-+|. ..|..+.|+ ..++++++.|.++.+||+.... +.+.+.+|...|+.+
T Consensus 257 sTvrvWDv~tg--e~l~tlihHc-----eaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV 326 (499)
T KOG0281|consen 257 STVRVWDVNTG--EPLNTLIHHC-----EAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 326 (499)
T ss_pred ceEEEEeccCC--chhhHHhhhc-----ceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeee
Confidence 9999999999 7899999998 999999996 4899999999999999998765 445677999999999
Q ss_pred EeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEee
Q 038533 176 CWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELE 255 (337)
Q Consensus 176 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 255 (337)
.|+ .+++++++.|.+|++|++.+.+....+ .+|+..|.|+.+ .++++++|+.|.+ |++||+.. +.+++.++
T Consensus 327 dfd-~kyIVsASgDRTikvW~~st~efvRtl---~gHkRGIAClQY---r~rlvVSGSSDnt-IRlwdi~~-G~cLRvLe 397 (499)
T KOG0281|consen 327 DFD-DKYIVSASGDRTIKVWSTSTCEFVRTL---NGHKRGIACLQY---RDRLVVSGSSDNT-IRLWDIEC-GACLRVLE 397 (499)
T ss_pred ccc-cceEEEecCCceEEEEeccceeeehhh---hcccccceehhc---cCeEEEecCCCce-EEEEeccc-cHHHHHHh
Confidence 997 559999999999999999998855544 457889999988 7899999999998 99999998 77899999
Q ss_pred cccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCC-CCC-ceeeeeCCCceeEEEEccCCCceEEEEcCCcEE
Q 038533 256 RHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPN-GID-PMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQ 333 (337)
Q Consensus 256 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 333 (337)
+|..-|.++.|... .+++|+.||+|++||+..+...+.. +.. ...+..|.++|..+.|..- .+++++.|.+|.
T Consensus 398 GHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f--qIvsssHddtIL 472 (499)
T KOG0281|consen 398 GHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF--QIISSSHDDTIL 472 (499)
T ss_pred chHHhhhheeecCc---eeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce--EEEeccCCCeEE
Confidence 99999999999743 7999999999999999933222111 111 1255678999999999644 689999999999
Q ss_pred EEeC
Q 038533 334 LLKV 337 (337)
Q Consensus 334 iw~l 337 (337)
||+.
T Consensus 473 iWdF 476 (499)
T KOG0281|consen 473 IWDF 476 (499)
T ss_pred EEEc
Confidence 9984
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.4e-36 Score=249.12 Aligned_cols=278 Identities=21% Similarity=0.349 Sum_probs=235.9
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.|..+|++++|+ +++|++++. +|.+.+|+++........ ..|...+..+.|+|++. ++++
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~----~g~i~i~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~---------~l~~ 68 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSG----DGTIKVWDLETGELLRTL-----KGHTGPVRDVAASADGT---------YLAS 68 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeec----CcEEEEEEeeCCCcEEEE-----ecCCcceeEEEECCCCC---------EEEE
Confidence 468999999999 799999996 999999999866533332 57888899999999998 7777
Q ss_pred eC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeE
Q 038533 97 SG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 97 ~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
++ + .|++|++.++ +....+..|. ..|.++.|++ +++++++++.+|.|++||+++++....+..|...+.+
T Consensus 69 ~~~~~~i~i~~~~~~--~~~~~~~~~~-----~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~ 140 (289)
T cd00200 69 GSSDKTIRLWDLETG--ECVRTLTGHT-----SYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS 140 (289)
T ss_pred EcCCCeEEEEEcCcc--cceEEEeccC-----CcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEE
Confidence 77 5 9999999987 5666777776 7899999998 7888888888999999999988888888889999999
Q ss_pred EEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEE
Q 038533 175 ICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAE 253 (337)
Q Consensus 175 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 253 (337)
++|+ ++.++++++.++.|++||++..+....+. .+...+.++.|+| +++.+++++.++. |++||++. ..++..
T Consensus 141 ~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~~~~-i~i~d~~~-~~~~~~ 214 (289)
T cd00200 141 VAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSP-DGEKLLSSSSDGT-IKLWDLST-GKCLGT 214 (289)
T ss_pred EEEcCcCCEEEEEcCCCcEEEEEccccccceeEe---cCccccceEEECC-CcCEEEEecCCCc-EEEEECCC-Cceecc
Confidence 9999 57788888779999999999776554443 3567899999999 8888988888888 99999987 556777
Q ss_pred eecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEE
Q 038533 254 LERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQ 333 (337)
Q Consensus 254 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 333 (337)
+..|...+.++.|+|++. ++++++.||.|++|++. +. .....+..|...|.+++|+|+++.+++++.|+.++
T Consensus 215 ~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~i~~~~--~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 215 LRGHENGVNSVAFSPDGY-LLASGSEDGTIRVWDLR--TG-----ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIR 286 (289)
T ss_pred hhhcCCceEEEEEcCCCc-EEEEEcCCCcEEEEEcC--Cc-----eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEE
Confidence 778888999999999977 88888889999999998 31 12334557888999999999999999999999999
Q ss_pred EEe
Q 038533 334 LLK 336 (337)
Q Consensus 334 iw~ 336 (337)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 996
No 26
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.5e-38 Score=269.00 Aligned_cols=239 Identities=20% Similarity=0.291 Sum_probs=212.7
Q ss_pred CCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCC-----------------------------ccceeeec
Q 038533 70 PYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSS-----------------------------IEPVAVLN 118 (337)
Q Consensus 70 ~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~-----------------------------~~~~~~~~ 118 (337)
...++|..|++++. +||.|- | .|++|.+...+ ......+-
T Consensus 378 ~~~v~ca~fSddss---------mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~ 448 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSS---------MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLY 448 (707)
T ss_pred CCcceeEeecCCcc---------hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEee
Confidence 45689999999998 999887 5 99999987311 12234466
Q ss_pred CCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEEC
Q 038533 119 NSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDL 197 (337)
Q Consensus 119 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~ 197 (337)
+|. ++|....|+| +.++|+++++|+++++|.+.+...+..+++|..+|..+.|+ -|-+||+++.|++-++|..
T Consensus 449 GH~-----GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 449 GHS-----GPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST 522 (707)
T ss_pred cCC-----Cceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence 777 9999999999 99999999999999999999999999999999999999999 4999999999999999999
Q ss_pred CCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEE
Q 038533 198 RDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSV 277 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 277 (337)
......+.+. +|...+.|+.|+| +..|+++|+.|.. +++||..+ +..++.+.+|.++|.+++|+|+|. +|++|
T Consensus 523 d~~~PlRifa---ghlsDV~cv~FHP-Ns~Y~aTGSsD~t-VRlWDv~~-G~~VRiF~GH~~~V~al~~Sp~Gr-~LaSg 595 (707)
T KOG0263|consen 523 DHNKPLRIFA---GHLSDVDCVSFHP-NSNYVATGSSDRT-VRLWDVST-GNSVRIFTGHKGPVTALAFSPCGR-YLASG 595 (707)
T ss_pred ccCCchhhhc---ccccccceEEECC-cccccccCCCCce-EEEEEcCC-CcEEEEecCCCCceEEEEEcCCCc-eEeec
Confidence 8876444432 4788999999999 9999999999998 99999998 667999999999999999999999 99999
Q ss_pred cCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 278 GDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 278 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
+.||.|.+||+. . +.....+.+|.+.|.++.|+.+|..|++++.|++|++||+
T Consensus 596 ~ed~~I~iWDl~--~-----~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 596 DEDGLIKIWDLA--N-----GSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred ccCCcEEEEEcC--C-----CcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 999999999999 3 2345688899999999999999999999999999999986
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.6e-38 Score=252.52 Aligned_cols=289 Identities=19% Similarity=0.293 Sum_probs=241.2
Q ss_pred Cccceeeee-CCCceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCccc
Q 038533 11 RSENSVTHE-SPYPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRK 86 (337)
Q Consensus 11 ~~~~~~~~~-~~~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 86 (337)
|.+.++.+. |...|+++.|. +.+|++++. |+.|+||++-.....+.. . .+|..+|.+++|++++.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gm----D~~vklW~vy~~~~~lrt---f-~gH~k~Vrd~~~s~~g~--- 271 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGM----DGLVKLWNVYDDRRCLRT---F-KGHRKPVRDASFNNCGT--- 271 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCC----CceEEEEEEecCcceehh---h-hcchhhhhhhhccccCC---
Confidence 555666664 58889999999 899999998 999999998875554443 3 79999999999999999
Q ss_pred CcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhh
Q 038533 87 SSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQ 164 (337)
Q Consensus 87 ~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 164 (337)
.+.+++ | .+++||++++ ++...+... ..++|+.|+|.+.+.+++|+.|+.|+.||+++++.++.
T Consensus 272 ------~fLS~sfD~~lKlwDtETG--~~~~~f~~~------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 272 ------SFLSASFDRFLKLWDTETG--QVLSRFHLD------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred ------eeeeeecceeeeeeccccc--eEEEEEecC------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHH
Confidence 555555 8 9999999999 666666653 57899999995559999999999999999999999999
Q ss_pred hhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEE
Q 038533 165 LIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILD 243 (337)
Q Consensus 165 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d 243 (337)
+..|-+.|..+.|- .+..+++.+.|+++++|+.+.+-....+.... .-...++..+| ++.+++.=+.|+. |.+|.
T Consensus 338 Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P-~~~~~~aQs~dN~-i~ifs 413 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHP-NGKWFAAQSMDNY-IAIFS 413 (503)
T ss_pred HHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh--hccCcceecCC-CCCeehhhccCce-EEEEe
Confidence 99999999999999 79999999999999999999887666655542 34567888899 9999999999988 99998
Q ss_pred CCCCC--CCeEEeecccc--eeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccC
Q 038533 244 IRSPT--LPVAELERHRA--CVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPA 319 (337)
Q Consensus 244 ~~~~~--~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 319 (337)
+.... ...+.+.+|.. .-..+.|||||. +|++|+.||.+.+||.+ +.. ....+..|.+++..+.|+|.
T Consensus 414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~-~l~SGdsdG~v~~wdwk--t~k-----l~~~lkah~~~ci~v~wHP~ 485 (503)
T KOG0282|consen 414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGR-TLCSGDSDGKVNFWDWK--TTK-----LVSKLKAHDQPCIGVDWHPV 485 (503)
T ss_pred cccccccCHhhhhcceeccCceeeEEEcCCCC-eEEeecCCccEEEeech--hhh-----hhhccccCCcceEEEEecCC
Confidence 76532 23345677753 456789999999 99999999999999999 422 23477789999999999997
Q ss_pred CCc-eEEEEcCCcEEEEe
Q 038533 320 QPD-WLAIAFSNKMQLLK 336 (337)
Q Consensus 320 ~~~-l~~~~~d~~i~iw~ 336 (337)
.+. +++++.||.|++|+
T Consensus 486 e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 486 EPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CcceeEecccCceeEecC
Confidence 654 66777999999996
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-36 Score=256.03 Aligned_cols=292 Identities=17% Similarity=0.243 Sum_probs=241.7
Q ss_pred ceeeeeC-CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCC
Q 038533 14 NSVTHES-PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSN 90 (337)
Q Consensus 14 ~~~~~~~-~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~ 90 (337)
.++.+.- ..+|..++|+ |++||.|+. .-|.+.||+|+.+...++. .+|-..+++++++||+.
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQ-----QgH~~~i~~l~YSpDgq------- 363 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQ-----QGHSDRITSLAYSPDGQ------- 363 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeec-----cccccceeeEEECCCCc-------
Confidence 3445544 5789999999 999999995 4579999999998887776 89999999999999999
Q ss_pred ccEEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhcc
Q 038533 91 RHLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAH 168 (337)
Q Consensus 91 ~~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 168 (337)
++|+|++ .|+|||...+ -+..++..|+ +.|+.+.|+. .++.+++.+.||+|+.||+...+..+++...
T Consensus 364 --~iaTG~eDgKVKvWn~~Sg--fC~vTFteHt-----s~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P 433 (893)
T KOG0291|consen 364 --LIATGAEDGKVKVWNTQSG--FCFVTFTEHT-----SGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP 433 (893)
T ss_pred --EEEeccCCCcEEEEeccCc--eEEEEeccCC-----CceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCC
Confidence 9999984 9999999998 7999999999 9999999998 9999999999999999999999888888743
Q ss_pred -CCceeEEEeC-CCcEEEEEcCCCe-EEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECC
Q 038533 169 -DKEVYDICWG-EARVFASVSADGS-VRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR 245 (337)
Q Consensus 169 -~~~v~~~~~~-~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~ 245 (337)
.-...+++.. .|.++..|+.|.. |.+|++.+++.... ..+|+++|.+++|+| .+..|++++.|.+ |++||+-
T Consensus 434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi---LsGHEgPVs~l~f~~-~~~~LaS~SWDkT-VRiW~if 508 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI---LSGHEGPVSGLSFSP-DGSLLASGSWDKT-VRIWDIF 508 (893)
T ss_pred CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh---hcCCCCcceeeEEcc-ccCeEEeccccce-EEEEEee
Confidence 2345666666 4778888887764 99999999984433 346899999999999 9999999999999 9999998
Q ss_pred CCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCC-CCCCC----------ce--eeeeCCCcee
Q 038533 246 SPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAG-PNGID----------PM--SMYSAGSEIN 312 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~----------~~--~~~~~~~~v~ 312 (337)
.....+.+++ +...+..++|.|+|+ -|++++.||.|.+||........ .++.. .. .........+
T Consensus 509 ~s~~~vEtl~-i~sdvl~vsfrPdG~-elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ft 586 (893)
T KOG0291|consen 509 SSSGTVETLE-IRSDVLAVSFRPDGK-ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFT 586 (893)
T ss_pred ccCceeeeEe-eccceeEEEEcCCCC-eEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceE
Confidence 7555566665 667899999999999 99999999999999998322110 00100 00 1112346789
Q ss_pred EEEEccCCCceEEEEcCCcEEEEeC
Q 038533 313 QLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 313 ~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
.+++++||..+++++..+.|.|+++
T Consensus 587 ti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 587 TICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred EEEEcCCCCEEEecCCcccEEEEEC
Confidence 9999999999999999999999985
No 29
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1e-38 Score=252.03 Aligned_cols=242 Identities=19% Similarity=0.324 Sum_probs=213.0
Q ss_pred eeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 18 HESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 18 ~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
..|+.+|+++.|+ +.++++|.. +|.|++|+.+........ ..|..+|++++|+|+.. .++
T Consensus 135 QaHDs~Vr~m~ws~~g~wmiSgD~----gG~iKyWqpnmnnVk~~~-----ahh~eaIRdlafSpnDs---------kF~ 196 (464)
T KOG0284|consen 135 QAHDSPVRTMKWSHNGTWMISGDK----GGMIKYWQPNMNNVKIIQ-----AHHAEAIRDLAFSPNDS---------KFL 196 (464)
T ss_pred hhhcccceeEEEccCCCEEEEcCC----CceEEecccchhhhHHhh-----HhhhhhhheeccCCCCc---------eeE
Confidence 4589999999999 999999997 999999988766554443 46669999999999887 888
Q ss_pred EeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCcee
Q 038533 96 SSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVY 173 (337)
Q Consensus 96 ~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~ 173 (337)
+|+| +|+|||.... +....+.+|. -.|.+++|+| ...++++|+.|..|++||.++++++.++.+|...|.
T Consensus 197 t~SdDg~ikiWdf~~~--kee~vL~GHg-----wdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl 268 (464)
T KOG0284|consen 197 TCSDDGTIKIWDFRMP--KEERVLRGHG-----WDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVL 268 (464)
T ss_pred EecCCCeEEEEeccCC--chhheeccCC-----CCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEE
Confidence 8885 9999999887 5666778887 8999999999 889999999999999999999999999999999999
Q ss_pred EEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeE
Q 038533 174 DICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVA 252 (337)
Q Consensus 174 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 252 (337)
.+.|+ ++++|++++.|..++++|+|+.+. +....+|+..++++.|+|-...+|.+|+.|+. |..|.+.. ..++.
T Consensus 269 ~~~f~~n~N~Llt~skD~~~kv~DiR~mkE---l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs-vvh~~v~~-~~p~~ 343 (464)
T KOG0284|consen 269 AVKFNPNGNWLLTGSKDQSCKVFDIRTMKE---LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS-VVHWVVGL-EEPLG 343 (464)
T ss_pred EEEEcCCCCeeEEccCCceEEEEehhHhHH---HHHhhcchhhheeeccccccccceeeccCCCc-eEEEeccc-ccccc
Confidence 99999 799999999999999999996653 33344588999999999999999999999999 99999885 33443
Q ss_pred E-eecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCC
Q 038533 253 E-LERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLP 291 (337)
Q Consensus 253 ~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 291 (337)
. -.+|...|++++|+|-|. +|++|+.|.++++|.-..+
T Consensus 344 ~i~~AHd~~iwsl~~hPlGh-il~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 344 EIPPAHDGEIWSLAYHPLGH-ILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred CCCcccccceeeeeccccce-eEeecCCCcceeeeccCCC
Confidence 3 467999999999999998 9999999999999988743
No 30
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=5.6e-37 Score=245.52 Aligned_cols=309 Identities=21% Similarity=0.345 Sum_probs=242.9
Q ss_pred ccceeeeeCCCceeEEEEe-c-----------ceEEEeeeecc-CcceEEEEEecCC--------------Ccce-----
Q 038533 12 SENSVTHESPYPLYAMAVC-G-----------QRIAVGSFIED-YTNRVDVVSFEPE--------------SLSI----- 59 (337)
Q Consensus 12 ~~~~~~~~~~~~v~~~~~s-~-----------~~la~g~~~~~-~d~~i~i~~~~~~--------------~~~~----- 59 (337)
+..+++.....|-.++.|- . ++|+.|+...+ +.+.+.|=+++-. .+++
T Consensus 31 YDlv~th~LeWPSLt~qWlPd~~~~~~~~~~~~rliLGthTs~~~~n~L~iA~v~lp~~~~~~~~~~~~~e~~e~~g~~~ 110 (422)
T KOG0264|consen 31 YDLVITHALEWPSLTVQWLPDVTKPEEKDFSKQRLILGTHTSGSEQNYLVIASVQLPTDDAQFEDKHYDEERGEFGGFGA 110 (422)
T ss_pred HHHhhhccccccceEEEEcCCcccccCCCceeEEEEEEeecCCCCccEEEEEeecCCCcccccccccccccccccCCccc
Confidence 4445566668888888887 1 46777776333 6778888653311 1010
Q ss_pred ---ecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCC--------ccceeeecCCCCCccc
Q 038533 60 ---KTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSS--------IEPVAVLNNSKSSEFC 126 (337)
Q Consensus 60 ---~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~--------~~~~~~~~~~~~~~~~ 126 (337)
.........|.+.|+.+++.|+.. .++|+.+. .|.|||..+.. ..+...+.+|+
T Consensus 111 ~~~~v~i~~~i~h~gEVnRaRymPQnp--------~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~----- 177 (422)
T KOG0264|consen 111 VSGKVEISQKINHDGEVNRARYMPQNP--------NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE----- 177 (422)
T ss_pred cccceEEEEeccCCccchhhhhCCCCC--------cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec-----
Confidence 000122357999999999999998 67777764 99999987542 23445788998
Q ss_pred CCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc-------chhhhhccCCceeEEEeC--CCcEEEEEcCCCeEEEEEC
Q 038533 127 APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV-------VETQLIAHDKEVYDICWG--EARVFASVSADGSVRIFDL 197 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~ 197 (337)
+.-.+++|++.....+++++.|+.|.+||+.... +...+.+|...|..++|+ ...+|++++.|+.+.|||+
T Consensus 178 ~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~ 257 (422)
T KOG0264|consen 178 KEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDT 257 (422)
T ss_pred ccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEc
Confidence 4566799999888899999999999999997543 334567999999999999 6889999999999999999
Q ss_pred CCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEE
Q 038533 198 RDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSV 277 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 277 (337)
|+. ..........|...+.|++|+|.++.+||+|+.|+. |++||+|+...++.++.+|...|.++.|+|....+||++
T Consensus 258 R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t-V~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 258 RSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT-VALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred CCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCc-EEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec
Confidence 974 223333444688999999999999999999999999 999999999999999999999999999999998899999
Q ss_pred cCCCcEEEEeCCCCCCCCCC-------C--CCceeeeeCCCceeEEEEccCCCceEE-EEcCCcEEEEeC
Q 038533 278 GDDSQAFIWELPLPPVAGPN-------G--IDPMSMYSAGSEINQLQWSPAQPDWLA-IAFSNKMQLLKV 337 (337)
Q Consensus 278 ~~dg~i~iw~~~~~~~~~~~-------~--~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~iw~l 337 (337)
+.|+.+.|||+. ...... + +..+...+|...|.++.|+|..+++++ ++.|+.++||++
T Consensus 336 g~D~rl~vWDls--~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 336 GTDRRLNVWDLS--RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQM 403 (422)
T ss_pred ccCCcEEEEecc--ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeec
Confidence 999999999998 433221 1 112355588999999999999998775 568999999985
No 31
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.4e-37 Score=241.77 Aligned_cols=281 Identities=19% Similarity=0.332 Sum_probs=227.2
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.|.++|.-+.|| |++||+|+. |.+..||+...... +....++ .+|..+|..|.||||.+ +|++
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSk----D~Taiiw~v~~d~~-~kl~~tl-vgh~~~V~yi~wSPDdr---------yLla 286 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASK----DSTAIIWIVVYDVH-FKLKKTL-VGHSQPVSYIMWSPDDR---------YLLA 286 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccC----CceEEEEEEecCcc-eeeeeee-ecccCceEEEEECCCCC---------eEEe
Confidence 468999999999 999999998 99999999887765 4433344 89999999999999999 6666
Q ss_pred eC-C-eEEEEecCCCCccceeeecC-CCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccC-Cce
Q 038533 97 SG-D-FLRLWDVGDSSIEPVAVLNN-SKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHD-KEV 172 (337)
Q Consensus 97 ~~-~-~v~vw~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~-~~v 172 (337)
|+ + .+.+||+.++ .....+.. +. ..+.+++|.| ++..+++|+.|+.|..||+. |..+...++.. ..|
T Consensus 287 Cg~~e~~~lwDv~tg--d~~~~y~~~~~-----~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v 357 (519)
T KOG0293|consen 287 CGFDEVLSLWDVDTG--DLRHLYPSGLG-----FSVSSCAWCP-DGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKV 357 (519)
T ss_pred cCchHheeeccCCcc--hhhhhcccCcC-----CCcceeEEcc-CCceeEecCCCCcEEEecCC-cchhhccccccccee
Confidence 66 6 9999999999 44444443 23 6789999999 99999999999999999985 44444444332 468
Q ss_pred eEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCe
Q 038533 173 YDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPV 251 (337)
Q Consensus 173 ~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~ 251 (337)
.+++.. +|+++++.+.|..|++++..+......+.+ ..+|++++.+. +++++++.-.+.. +++||++. ...+
T Consensus 358 ~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise----~~~its~~iS~-d~k~~LvnL~~qe-i~LWDl~e-~~lv 430 (519)
T KOG0293|consen 358 HDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE----EQPITSFSISK-DGKLALVNLQDQE-IHLWDLEE-NKLV 430 (519)
T ss_pred EEEEEcCCCcEEEEEecccceeeechhhhhhhccccc----cCceeEEEEcC-CCcEEEEEcccCe-eEEeecch-hhHH
Confidence 999999 899999999999999999988765544433 37999999998 9999988888887 99999996 5667
Q ss_pred EEeecccce--eeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCce-EEEEc
Q 038533 252 AELERHRAC--VNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDW-LAIAF 328 (337)
Q Consensus 252 ~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~ 328 (337)
..+.+|... +..-+|--....++++|++|+.|+||+...+ .....+.+|...|++++|+|..+.+ ++++.
T Consensus 431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-------kll~~LsGHs~~vNcVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-------KLLAVLSGHSKTVNCVSWNPADPEMFASASD 503 (519)
T ss_pred HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC-------ceeEeecCCcceeeEEecCCCCHHHhhccCC
Confidence 778888653 4444566544349999999999999999932 2355889999999999999987655 45678
Q ss_pred CCcEEEEeC
Q 038533 329 SNKMQLLKV 337 (337)
Q Consensus 329 d~~i~iw~l 337 (337)
||+|+||..
T Consensus 504 DgtIRIWg~ 512 (519)
T KOG0293|consen 504 DGTIRIWGP 512 (519)
T ss_pred CCeEEEecC
Confidence 999999963
No 32
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.8e-37 Score=232.54 Aligned_cols=243 Identities=19% Similarity=0.280 Sum_probs=211.7
Q ss_pred CCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEE
Q 038533 66 SFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIG 143 (337)
Q Consensus 66 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 143 (337)
..+|++.|+.+.|+|++. +||+|+ | .|.+|++.... +....+++|+ ++|+.+.|.+ +++.++
T Consensus 43 l~gh~geI~~~~F~P~gs---------~~aSgG~Dr~I~LWnv~gdc-eN~~~lkgHs-----gAVM~l~~~~-d~s~i~ 106 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGS---------CFASGGSDRAIVLWNVYGDC-ENFWVLKGHS-----GAVMELHGMR-DGSHIL 106 (338)
T ss_pred cCCCcceEEEEEECCCCC---------eEeecCCcceEEEEeccccc-cceeeecccc-----ceeEeeeecc-CCCEEE
Confidence 479999999999999999 999988 7 99999987653 6777888998 9999999998 999999
Q ss_pred EeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEe
Q 038533 144 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAW 221 (337)
Q Consensus 144 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~ 221 (337)
+++.|.+++.||+++|+.++.+++|...|+++.-. ...++.+++.||++++||+|+....+... .+.+++++.|
T Consensus 107 S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~----~kyqltAv~f 182 (338)
T KOG0265|consen 107 SCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE----NKYQLTAVGF 182 (338)
T ss_pred EecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc----cceeEEEEEe
Confidence 99999999999999999999999999999999976 46678899999999999999888665543 2478999999
Q ss_pred ecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCC-
Q 038533 222 NKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGID- 300 (337)
Q Consensus 222 ~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~- 300 (337)
.. .+..+.+|+-|+. |++||++. ......+.+|..+|+.+..+|+|. ++.+-+.|.++++||++ .... +..
T Consensus 183 ~d-~s~qv~sggIdn~-ikvWd~r~-~d~~~~lsGh~DtIt~lsls~~gs-~llsnsMd~tvrvwd~r--p~~p--~~R~ 254 (338)
T KOG0265|consen 183 KD-TSDQVISGGIDND-IKVWDLRK-NDGLYTLSGHADTITGLSLSRYGS-FLLSNSMDNTVRVWDVR--PFAP--SQRC 254 (338)
T ss_pred cc-cccceeeccccCc-eeeecccc-CcceEEeecccCceeeEEeccCCC-ccccccccceEEEEEec--ccCC--CCce
Confidence 98 8999999999998 99999998 567899999999999999999999 99999999999999999 3322 112
Q ss_pred ceeeeeC----CCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 301 PMSMYSA----GSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 301 ~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
...+.+| ......++|+|++..+-+++.|..+++|+
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWD 294 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEee
Confidence 2233333 33467889999999999999999999997
No 33
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-36 Score=261.77 Aligned_cols=280 Identities=16% Similarity=0.225 Sum_probs=241.5
Q ss_pred CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC
Q 038533 21 PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG 98 (337)
Q Consensus 21 ~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~ 98 (337)
...|..++|+ ..+++++-. .|.|++||+.-.+..-.. .+|.++|..++|+|..+ ++++|+
T Consensus 9 SsRvKglsFHP~rPwILtslH----sG~IQlWDYRM~tli~rF-----deHdGpVRgv~FH~~qp---------lFVSGG 70 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLH----SGVIQLWDYRMGTLIDRF-----DEHDGPVRGVDFHPTQP---------LFVSGG 70 (1202)
T ss_pred cccccceecCCCCCEEEEeec----CceeeeehhhhhhHHhhh-----hccCCccceeeecCCCC---------eEEecC
Confidence 4678999999 889999998 999999999877765554 78999999999999999 999999
Q ss_pred C--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEE
Q 038533 99 D--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDIC 176 (337)
Q Consensus 99 ~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~ 176 (337)
| .|+||+..+. +++.++.+|- +.|..+.|++ .-.+|+++|.|.+|+||+..+++++..+.+|...|.|..
T Consensus 71 DDykIkVWnYk~r--rclftL~GHl-----DYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 71 DDYKIKVWNYKTR--RCLFTLLGHL-----DYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred CccEEEEEecccc--eehhhhcccc-----ceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 6 9999999998 8999999998 9999999998 889999999999999999999999999999999999999
Q ss_pred eCC-CcEEEEEcCCCeEEEEECCCCCCce--------------------------eeecCCCCCCCceEEEeecCCCcEE
Q 038533 177 WGE-ARVFASVSADGSVRIFDLRDKEHST--------------------------IIYESPQPDTPLLRLAWNKQDLRYM 229 (337)
Q Consensus 177 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~--------------------------~~~~~~~~~~~i~~~~~~~~~~~~l 229 (337)
|+| .++++++|-|.+|++||+...+... ...-..+|+..|+-++|+| .-.++
T Consensus 143 FhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-Tlpli 221 (1202)
T KOG0292|consen 143 FHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLI 221 (1202)
T ss_pred cCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceE
Confidence 995 8999999999999999986432100 0111235888999999999 88999
Q ss_pred EEEEecCCEEEEEECCCCC-CCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCC
Q 038533 230 ATILMDSNKVVILDIRSPT-LPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAG 308 (337)
Q Consensus 230 ~~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 308 (337)
++|+.|.. |++|.+...+ -.+.+..+|...|.++-|+|... ++++.++|++|+|||+. +.. ....+....
T Consensus 222 VSG~DDRq-VKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~--kRt-----~v~tfrren 292 (1202)
T KOG0292|consen 222 VSGADDRQ-VKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMT--KRT-----SVQTFRREN 292 (1202)
T ss_pred EecCCcce-eeEEEeccccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecc--ccc-----ceeeeeccC
Confidence 99999988 9999987633 24566789999999999999988 99999999999999999 321 234555667
Q ss_pred CceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 309 SEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 309 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
++-+.++-+|..+ |++++.|+.+.||++
T Consensus 293 dRFW~laahP~lN-LfAAgHDsGm~VFkl 320 (1202)
T KOG0292|consen 293 DRFWILAAHPELN-LFAAGHDSGMIVFKL 320 (1202)
T ss_pred CeEEEEEecCCcc-eeeeecCCceEEEEE
Confidence 8899999999995 788888888888864
No 34
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-35 Score=239.88 Aligned_cols=286 Identities=17% Similarity=0.265 Sum_probs=222.6
Q ss_pred CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe
Q 038533 20 SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS 97 (337)
Q Consensus 20 ~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~ 97 (337)
|..-|+|++|+ |.++|+++. ||++.|||=. +++......-..+|.+.|.+++|+||+. .++++
T Consensus 189 HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGk--tge~vg~l~~~~aHkGsIfalsWsPDs~---------~~~T~ 253 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGK--TGEKVGELEDSDAHKGSIFALSWSPDST---------QFLTV 253 (603)
T ss_pred cccceeeEEECCCCCeEEEecC----CccEEEEcCC--CccEEEEecCCCCccccEEEEEECCCCc---------eEEEe
Confidence 45679999999 999999997 9999996543 4333321122368999999999999999 66666
Q ss_pred C-C-eEEEEecCCCC-----------------------------------------ccceeeecCCCCCcccCCeeEEEe
Q 038533 98 G-D-FLRLWDVGDSS-----------------------------------------IEPVAVLNNSKSSEFCAPLTSFDW 134 (337)
Q Consensus 98 ~-~-~v~vw~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~i~~~~~ 134 (337)
+ | +++|||+.+.+ ......+.+|. ..|+++..
T Consensus 254 SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHn-----K~ITaLtv 328 (603)
T KOG0318|consen 254 SADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHN-----KSITALTV 328 (603)
T ss_pred cCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccc-----cceeEEEE
Confidence 5 7 99999987642 12334455565 99999999
Q ss_pred ecCCCCeEEEeeCCCcEEEEeCCCccchhhh-hccCC-------------------------------------------
Q 038533 135 NEIEPKRIGTCSIDTTCTIWDIEKGVVETQL-IAHDK------------------------------------------- 170 (337)
Q Consensus 135 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~------------------------------------------- 170 (337)
+| ++++|++|+.||.|.-||..++..-+.. +.|..
T Consensus 329 ~~-d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q 407 (603)
T KOG0318|consen 329 SP-DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ 407 (603)
T ss_pred cC-CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCC
Confidence 99 9999999999999999998765311100 00000
Q ss_pred -------------------------------------ceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCC
Q 038533 171 -------------------------------------EVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQP 212 (337)
Q Consensus 171 -------------------------------------~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 212 (337)
...+++++ +++.++.|+.|+.|++|.+........... ..|
T Consensus 408 P~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~-~~h 486 (603)
T KOG0318|consen 408 PKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL-LEH 486 (603)
T ss_pred ceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeee-ecc
Confidence 14466677 678899999999999999988664333222 247
Q ss_pred CCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCC
Q 038533 213 DTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPP 292 (337)
Q Consensus 213 ~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 292 (337)
..++++++++| ++.+|+++...+. +.+||..+.......+.-|...|.+++|+|+.. ++|||+.|..|.||+++.|.
T Consensus 487 ~a~iT~vaySp-d~~yla~~Da~rk-vv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~-~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 487 RAAITDVAYSP-DGAYLAAGDASRK-VVLYDVASREVKTNRWAFHTAKINCVAWSPNNK-LVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred cCCceEEEECC-CCcEEEEeccCCc-EEEEEcccCceecceeeeeeeeEEEEEeCCCce-EEEeccccceEEEEEccChh
Confidence 89999999999 9999999999998 999999985443445566999999999999999 99999999999999999433
Q ss_pred CCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 293 VAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
........|...|+.+.|-.+. .+++++.|..|++|++
T Consensus 564 ------~~i~iknAH~~gVn~v~wlde~-tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 564 ------KHIIIKNAHLGGVNSVAWLDES-TVVSSGQDANIKVWNV 601 (603)
T ss_pred ------hheEeccccccCceeEEEecCc-eEEeccCcceeEEecc
Confidence 1233455788889999998665 6999999999999986
No 35
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.2e-35 Score=231.63 Aligned_cols=286 Identities=13% Similarity=0.181 Sum_probs=236.4
Q ss_pred ceeee-eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCC
Q 038533 14 NSVTH-ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSN 90 (337)
Q Consensus 14 ~~~~~-~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~ 90 (337)
.+.+| .|..+|++++.+ .+++|+|+. |..-.||+.......... .+|.+.|+++.|+.++.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGg----DD~AflW~~~~ge~~~el-----tgHKDSVt~~~Fshdgt------- 119 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGG----DDLAFLWDISTGEFAGEL-----TGHKDSVTCCSFSHDGT------- 119 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCC----CceEEEEEccCCcceeEe-----cCCCCceEEEEEccCce-------
Confidence 44444 579999999999 788899885 999999999887755554 89999999999999999
Q ss_pred ccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhcc
Q 038533 91 RHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAH 168 (337)
Q Consensus 91 ~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 168 (337)
+||+|+ + .|+||+..++ .....+...- ..|.-+.|+| .+..|++|+.||.+.+|.+.++...+.+.+|
T Consensus 120 --lLATGdmsG~v~v~~~stg--~~~~~~~~e~-----~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh 189 (399)
T KOG0296|consen 120 --LLATGDMSGKVLVFKVSTG--GEQWKLDQEV-----EDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGH 189 (399)
T ss_pred --EEEecCCCccEEEEEcccC--ceEEEeeccc-----CceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCC
Confidence 999998 5 9999999998 4555554333 6788899999 9999999999999999999998888889999
Q ss_pred CCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCC-------------------------------------
Q 038533 169 DKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESP------------------------------------- 210 (337)
Q Consensus 169 ~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------------- 210 (337)
..++++=.|. +|+.++++..||+|++||+.+++....+....
T Consensus 190 ~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 190 NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 9999999999 89999999999999999999886543332100
Q ss_pred -----------CCCCCceEEEeecC--CCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEE
Q 038533 211 -----------QPDTPLLRLAWNKQ--DLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSV 277 (337)
Q Consensus 211 -----------~~~~~i~~~~~~~~--~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 277 (337)
.+...+.++.+.|. .-.+.|+|+-||. |.|||+.. .+ ++....|..+|..+.|-+ .. +|+++
T Consensus 270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~-i~iyD~a~-~~-~R~~c~he~~V~~l~w~~-t~-~l~t~ 344 (399)
T KOG0296|consen 270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGT-IAIYDLAA-ST-LRHICEHEDGVTKLKWLN-TD-YLLTA 344 (399)
T ss_pred ecCCCCccccccchhhhhhhhhcccccccchhhcccccce-EEEEeccc-ch-hheeccCCCceEEEEEcC-cc-hheee
Confidence 01122233333331 3456788999998 99999987 33 455666999999999999 55 89999
Q ss_pred cCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 278 GDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 278 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
+.+|.|+.||.+ + +.....+.+|...|.+++.+|+++.+++++.|++.+||++
T Consensus 345 c~~g~v~~wDaR--t-----G~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 345 CANGKVRQWDAR--T-----GQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred ccCceEEeeecc--c-----cceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 999999999999 3 3456688999999999999999999999999999999975
No 36
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.6e-36 Score=219.38 Aligned_cols=283 Identities=17% Similarity=0.237 Sum_probs=231.0
Q ss_pred cCCccceeeee-CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcc
Q 038533 9 HLRSENSVTHE-SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSR 85 (337)
Q Consensus 9 ~~~~~~~~~~~-~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~ 85 (337)
+.|++.+..+. ++++|.++.|+ |++.++++. |.+|++|+.......... .+|...|..++.+.|+.
T Consensus 4 e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGs----drtvrLWNp~rg~liktY-----sghG~EVlD~~~s~Dns-- 72 (307)
T KOG0316|consen 4 ELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGS----DRTVRLWNPLRGALIKTY-----SGHGHEVLDAALSSDNS-- 72 (307)
T ss_pred cCcchhceeecccccceEEEEEccCCCEEEEcCC----CceEEeecccccceeeee-----cCCCceeeecccccccc--
Confidence 34555666555 48999999999 999999887 999999876655444333 78999999999999998
Q ss_pred cCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCc--cc
Q 038533 86 KSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKG--VV 161 (337)
Q Consensus 86 ~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~ 161 (337)
-+++|+ | .|.+||+.++ +..+.+.+|. +.|+.++|+. +...+++|+.|.++++||.++. ++
T Consensus 73 -------kf~s~GgDk~v~vwDV~TG--kv~Rr~rgH~-----aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~eP 137 (307)
T KOG0316|consen 73 -------KFASCGGDKAVQVWDVNTG--KVDRRFRGHL-----AQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEP 137 (307)
T ss_pred -------ccccCCCCceEEEEEcccC--eeeeeccccc-----ceeeEEEecC-cceEEEeccccceeEEEEcccCCCCc
Confidence 777766 6 9999999999 7899999998 9999999998 8999999999999999999865 47
Q ss_pred hhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEE
Q 038533 162 ETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI 241 (337)
Q Consensus 162 ~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i 241 (337)
++.+....+.|.++..+ +..+++|+.||+++.||+|.++...-. ...+|+++.|++ +++..++++.++. +++
T Consensus 138 iQildea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~-d~nc~La~~l~st-lrL 209 (307)
T KOG0316|consen 138 IQILDEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSK-DGNCSLASSLDST-LRL 209 (307)
T ss_pred cchhhhhcCceeEEEec-ccEEEeeccCCcEEEEEeecceeehhh-----cCCcceeEEecC-CCCEEEEeeccce-eee
Confidence 78888778889999886 668999999999999999998743222 246999999999 9999999999998 999
Q ss_pred EECCCCCCCeEEeecccceee--EEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCc-eeEEEEcc
Q 038533 242 LDIRSPTLPVAELERHRACVN--AIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSE-INQLQWSP 318 (337)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~ 318 (337)
.|-.+ ++.++.+.+|...=. ..+++.... .+++|++||.+.+||+...+ ....+..+... |.+++++|
T Consensus 210 lDk~t-GklL~sYkGhkn~eykldc~l~qsdt-hV~sgSEDG~Vy~wdLvd~~-------~~sk~~~~~~v~v~dl~~hp 280 (307)
T KOG0316|consen 210 LDKET-GKLLKSYKGHKNMEYKLDCCLNQSDT-HVFSGSEDGKVYFWDLVDET-------QISKLSVVSTVIVTDLSCHP 280 (307)
T ss_pred cccch-hHHHHHhcccccceeeeeeeecccce-eEEeccCCceEEEEEeccce-------eeeeeccCCceeEEeeeccc
Confidence 99988 778888999876443 345666666 89999999999999999322 23344445555 89999999
Q ss_pred CCCceEEEEcCCcEEEE
Q 038533 319 AQPDWLAIAFSNKMQLL 335 (337)
Q Consensus 319 ~~~~l~~~~~d~~i~iw 335 (337)
....++++. ++.+..|
T Consensus 281 ~~~~f~~A~-~~~~~~~ 296 (307)
T KOG0316|consen 281 TMDDFITAT-GHGDLFW 296 (307)
T ss_pred CccceeEec-CCceece
Confidence 987777665 3444444
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.4e-36 Score=253.41 Aligned_cols=278 Identities=18% Similarity=0.234 Sum_probs=238.2
Q ss_pred CCceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe
Q 038533 21 PYPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS 97 (337)
Q Consensus 21 ~~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~ 97 (337)
.+.|..|.|- .++||++++ .+.+++|+.......+ ..+|++.|.++....++. +|++|
T Consensus 323 ndEI~Dm~~lG~e~~~laVATN----s~~lr~y~~~~~~c~i------i~GH~e~vlSL~~~~~g~---------llat~ 383 (775)
T KOG0319|consen 323 NDEILDMKFLGPEESHLAVATN----SPELRLYTLPTSYCQI------IPGHTEAVLSLDVWSSGD---------LLATG 383 (775)
T ss_pred chhheeeeecCCccceEEEEeC----CCceEEEecCCCceEE------EeCchhheeeeeecccCc---------EEEEe
Confidence 5789999998 599999998 9999999766554443 379999999999666677 99999
Q ss_pred C-C-eEEEEecCCCC--ccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc---------chhh
Q 038533 98 G-D-FLRLWDVGDSS--IEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV---------VETQ 164 (337)
Q Consensus 98 ~-~-~v~vw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------~~~~ 164 (337)
+ | ++++|.++.+. ..++....+|. ..|.+++++......|++++.|+++++|++...+ ....
T Consensus 384 sKD~svilWr~~~~~~~~~~~a~~~gH~-----~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 384 SKDKSVILWRLNNNCSKSLCVAQANGHT-----NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred cCCceEEEEEecCCcchhhhhhhhcccc-----cccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence 9 6 99999995442 34556677887 9999999987667899999999999999997622 1223
Q ss_pred hhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEE
Q 038533 165 LIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILD 243 (337)
Q Consensus 165 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d 243 (337)
...|...|++++.+ ++++++||+.|.+.++|++........ ..+|...+.++.|+| ..+.+++++.|.+ |+||.
T Consensus 459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v---LsGH~RGvw~V~Fs~-~dq~laT~SgD~T-vKIW~ 533 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV---LSGHTRGVWCVSFSK-NDQLLATCSGDKT-VKIWS 533 (775)
T ss_pred HHhhcccccceEecCCCceEEecccccceeeecccCceEEEE---eeCCccceEEEEecc-ccceeEeccCCce-EEEEE
Confidence 45799999999999 688999999999999999995553333 346899999999999 8999999999998 99999
Q ss_pred CCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCce
Q 038533 244 IRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDW 323 (337)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 323 (337)
+.+ ..+++++.+|...|..+.|-.+++ .|++++.||.|++|++. + ++....+-.|.++|++++-+|...++
T Consensus 534 is~-fSClkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnik--t-----~eC~~tlD~H~DrvWaL~~~~~~~~~ 604 (775)
T KOG0319|consen 534 IST-FSCLKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIK--T-----NECEMTLDAHNDRVWALSVSPLLDMF 604 (775)
T ss_pred ecc-ceeeeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEecc--c-----hhhhhhhhhccceeEEEeecCcccee
Confidence 998 778999999999999999999999 99999999999999999 4 22345777899999999999999889
Q ss_pred EEEEcCCcEEEEe
Q 038533 324 LAIAFSNKMQLLK 336 (337)
Q Consensus 324 ~~~~~d~~i~iw~ 336 (337)
++++.||.|.+|+
T Consensus 605 ~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 605 VTGGGDGRIIFWK 617 (775)
T ss_pred EecCCCeEEEEee
Confidence 9999999999996
No 38
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=215.34 Aligned_cols=268 Identities=13% Similarity=0.221 Sum_probs=221.2
Q ss_pred ceeeeeC-CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCC
Q 038533 14 NSVTHES-PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSN 90 (337)
Q Consensus 14 ~~~~~~~-~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~ 90 (337)
...+++| +..|..+... ++.||+|+ ...|++||+...+..... .+ .+|...|.++.|..+++
T Consensus 32 C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~--t~-e~h~kNVtaVgF~~dgr------- 96 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVA--TF-EGHTKNVTAVGFQCDGR------- 96 (311)
T ss_pred EEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCcee--EE-eccCCceEEEEEeecCe-------
Confidence 4556777 5789999998 88999998 799999999877653222 33 68999999999999999
Q ss_pred ccEEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh-c
Q 038533 91 RHLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI-A 167 (337)
Q Consensus 91 ~~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~ 167 (337)
.+++|++ +++|||++.. .+.+.++ |. ++|+++..+| +...|++|..+|.|++||+....+...+. .
T Consensus 97 --WMyTgseDgt~kIWdlR~~--~~qR~~~-~~-----spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 97 --WMYTGSEDGTVKIWDLRSL--SCQRNYQ-HN-----SPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred --EEEecCCCceEEEEeccCc--ccchhcc-CC-----CCcceEEecC-CcceEEeecCCCcEEEEEccCCccccccCCC
Confidence 9999994 9999999986 4555554 33 8999999999 88999999999999999998876555443 3
Q ss_pred cCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCce---eeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEE
Q 038533 168 HDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHST---IIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILD 243 (337)
Q Consensus 168 ~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d 243 (337)
....|.++... ++.+++.+...|.+++|++-...... .+.+.+.|++.+..+.++| ++++|++++.|.. ++||+
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdkt-v~iwn 243 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKT-VKIWN 243 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCce-EEEEe
Confidence 45678999999 89999999999999999998754322 2233456889999999999 9999999999998 99999
Q ss_pred CCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEc
Q 038533 244 IRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWS 317 (337)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 317 (337)
....-+....+.+|...+...+||.+++ ||+||+.|+.+++|+++.+ +......+|.....+++.+
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~~~-------k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSADGE-YLVTASSDHTARLWDLSAG-------KEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeeccCcc-EEEecCCCCceeecccccC-------ceeeecCCcccccEEEEee
Confidence 9986455667889999999999999999 9999999999999999933 2355667787777776653
No 39
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-36 Score=223.80 Aligned_cols=251 Identities=17% Similarity=0.285 Sum_probs=218.1
Q ss_pred ccceeeeeCCCceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCc
Q 038533 12 SENSVTHESPYPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSS 88 (337)
Q Consensus 12 ~~~~~~~~~~~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 88 (337)
......|...+.++.++|+ .+.+++++. ||+++||+......++.. ..+|...|.++.|++..+
T Consensus 51 i~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G----DGSLrl~d~~~~s~Pi~~----~kEH~~EV~Svdwn~~~r----- 117 (311)
T KOG0277|consen 51 IQECQSYDTEDGLFDVAWSENHENQVIAASG----DGSLRLFDLTMPSKPIHK----FKEHKREVYSVDWNTVRR----- 117 (311)
T ss_pred eEEEEeeecccceeEeeecCCCcceEEEEec----CceEEEeccCCCCcchhH----HHhhhhheEEeccccccc-----
Confidence 3455667778999999999 777777775 999999997766665554 379999999999999876
Q ss_pred CCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh
Q 038533 89 SNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI 166 (337)
Q Consensus 89 ~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 166 (337)
+.+++++ | +|++|+...+ ..++++.+|. ..|...+|+|..++++++++.|+.+++||++.......+.
T Consensus 118 ---~~~ltsSWD~TiKLW~~~r~--~Sv~Tf~gh~-----~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ 187 (311)
T KOG0277|consen 118 ---RIFLTSSWDGTIKLWDPNRP--NSVQTFNGHN-----SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIE 187 (311)
T ss_pred ---eeEEeeccCCceEeecCCCC--cceEeecCCc-----cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEE
Confidence 4666666 7 9999999888 6788999998 9999999999999999999999999999998755444588
Q ss_pred ccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEEC
Q 038533 167 AHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI 244 (337)
Q Consensus 167 ~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~ 244 (337)
.|..++.++.|+ +.+.++||+.|+.|+.||+|+.+.+.... .+|.-.|..+.|+|.....|++++.|-+ ++|||.
T Consensus 188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL--~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~ 264 (311)
T KOG0277|consen 188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL--NGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDP 264 (311)
T ss_pred eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee--cCCceEEEEEecCcchhhHhhhccccce-EEeccc
Confidence 999999999999 78999999999999999999988554433 4588899999999988899999999998 999999
Q ss_pred CCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeC
Q 038533 245 RSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWEL 288 (337)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 288 (337)
..+...+.+...|..-+..+.|++..+.++|+++.|..+.||+.
T Consensus 265 ~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 97677788888899999999999987779999999999999984
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.2e-36 Score=222.69 Aligned_cols=284 Identities=15% Similarity=0.221 Sum_probs=235.8
Q ss_pred CCccceeeeeCCCceeEEEEe-----cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCc
Q 038533 10 LRSENSVTHESPYPLYAMAVC-----GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSS 84 (337)
Q Consensus 10 ~~~~~~~~~~~~~~v~~~~~s-----~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 84 (337)
+..-|+.+..|..||..++|+ |-+|++++. |+.-.+ -+.+++...- ++ .+|.++|.......+..
T Consensus 3 ~~~~pl~c~ghtrpvvdl~~s~itp~g~flisa~k----d~~pml--r~g~tgdwig--tf-eghkgavw~~~l~~na~- 72 (334)
T KOG0278|consen 3 MRQTPLTCHGHTRPVVDLAFSPITPDGYFLISASK----DGKPML--RNGDTGDWIG--TF-EGHKGAVWSATLNKNAT- 72 (334)
T ss_pred cccCceEEcCCCcceeEEeccCCCCCceEEEEecc----CCCchh--ccCCCCCcEE--ee-eccCcceeeeecCchhh-
Confidence 445678888999999999999 788888987 888777 4445554443 33 78999999999988887
Q ss_pred ccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc-c
Q 038533 85 RKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV-V 161 (337)
Q Consensus 85 ~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~ 161 (337)
..|+++ | +-+|||.-++ ..+..+. |+ .-|..++|+. +.++|++|+.+..++|||++..+ +
T Consensus 73 --------~aasaaadftakvw~a~tg--delhsf~-hk-----hivk~~af~~-ds~~lltgg~ekllrvfdln~p~Ap 135 (334)
T KOG0278|consen 73 --------RAASAAADFTAKVWDAVTG--DELHSFE-HK-----HIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAP 135 (334)
T ss_pred --------hhhhhcccchhhhhhhhhh--hhhhhhh-hh-----heeeeEEecc-cchhhhccchHHHhhhhhccCCCCC
Confidence 777776 6 9999999998 4555654 44 6799999998 99999999999999999998765 6
Q ss_pred hhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEE
Q 038533 162 ETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVV 240 (337)
Q Consensus 162 ~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~ 240 (337)
...+.+|.+.|..+-|. .++.+++...|++|++||.+++.....+.. +.++.++..++ ++++|.++.. ++ |.
T Consensus 136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~----~s~VtSlEvs~-dG~ilTia~g-ss-V~ 208 (334)
T KOG0278|consen 136 PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF----NSPVTSLEVSQ-DGRILTIAYG-SS-VK 208 (334)
T ss_pred chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec----CCCCcceeecc-CCCEEEEecC-ce-eE
Confidence 67888999999999999 788899999999999999999997766654 37899999998 8888877543 33 99
Q ss_pred EEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCcee-eeeCCCceeEEEEccC
Q 038533 241 ILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMS-MYSAGSEINQLQWSPA 319 (337)
Q Consensus 241 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~ 319 (337)
+||..+ ..+++.+.. ...|.+...+|+.. .+++|+.|+.++.||.. + +++... ..+|.++|.++.|+|+
T Consensus 209 Fwdaks-f~~lKs~k~-P~nV~SASL~P~k~-~fVaGged~~~~kfDy~--T-----geEi~~~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 209 FWDAKS-FGLLKSYKM-PCNVESASLHPKKE-FFVAGGEDFKVYKFDYN--T-----GEEIGSYNKGHFGPVHCVRFSPD 278 (334)
T ss_pred Eecccc-ccceeeccC-ccccccccccCCCc-eEEecCcceEEEEEecc--C-----CceeeecccCCCCceEEEEECCC
Confidence 999998 445665553 45789999999997 99999999999999999 4 223334 4789999999999999
Q ss_pred CCceEEEEcCCcEEEEeC
Q 038533 320 QPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 320 ~~~l~~~~~d~~i~iw~l 337 (337)
|...++++.||+|+||++
T Consensus 279 GE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 279 GELYASGSEDGTIRLWQT 296 (334)
T ss_pred CceeeccCCCceEEEEEe
Confidence 998888999999999974
No 41
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.8e-34 Score=215.68 Aligned_cols=239 Identities=21% Similarity=0.346 Sum_probs=204.5
Q ss_pred CCCCCCCeEEEecCC-CCcccCcCCccEEEEeC-C-eEEEEecCC-CCccceeeec-CCCCCcccCCeeEEEeecCCCCe
Q 038533 67 FDHPYPPTKLMFDPN-SSSRKSSSNRHLLASSG-D-FLRLWDVGD-SSIEPVAVLN-NSKSSEFCAPLTSFDWNEIEPKR 141 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~-~~~~~~~~~~~~l~~~~-~-~v~vw~~~~-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~ 141 (337)
.+|.+++..++|+|- |. +||+|+ | .|++|+... ....+...+. +|+ ..|.+++|+| .+++
T Consensus 11 ~gh~~r~W~~awhp~~g~---------ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hk-----rsVRsvAwsp-~g~~ 75 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGV---------ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHK-----RSVRSVAWSP-HGRY 75 (312)
T ss_pred cCCCCcEEEEEeccCCce---------EEEeecCCceEEEEecCCCCcEEEEEeccccch-----heeeeeeecC-CCcE
Confidence 689999999999999 76 999999 5 999999984 3334444443 465 8999999999 9999
Q ss_pred EEEeeCCCcEEEEeCCCc--cchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceE
Q 038533 142 IGTCSIDTTCTIWDIEKG--VVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLR 218 (337)
Q Consensus 142 l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~ 218 (337)
|++|+.|.++.||.-..+ +++..+.+|+..|.+++|+ +|++||+++.|..+-+|.+..........-...|...|..
T Consensus 76 La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 76 LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH 155 (312)
T ss_pred EEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence 999999999999987655 4788899999999999999 8999999999999999999876655555445568889999
Q ss_pred EEeecCCCcEEEEEEecCCEEEEEECCCC--CCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCC
Q 038533 219 LAWNKQDLRYMATILMDSNKVVILDIRSP--TLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGP 296 (337)
Q Consensus 219 ~~~~~~~~~~l~~~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 296 (337)
+.|+| ...+|++++.|++ |++|+-... -.+.+++.+|...|.+++|+|.|. .|++++.|++++||... .
T Consensus 156 V~WHP-t~dlL~S~SYDnT-Ik~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD~tv~Iw~~~--~---- 226 (312)
T KOG0645|consen 156 VIWHP-TEDLLFSCSYDNT-IKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS-RLVSCSDDGTVSIWRLY--T---- 226 (312)
T ss_pred EEEcC-CcceeEEeccCCe-EEEEeecCCCCeeEEEEecCccceEEEEEecCCCc-eEEEecCCcceEeeeec--c----
Confidence 99999 9999999999999 999987632 257889999999999999999998 99999999999999966 1
Q ss_pred CCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 297 NGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 297 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
.....|..+++.++|. ++ .+++++.|+.|++++
T Consensus 227 -----~~~~~~sr~~Y~v~W~-~~-~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 227 -----DLSGMHSRALYDVPWD-NG-VIASGGGDDAIRLFK 259 (312)
T ss_pred -----CcchhcccceEeeeec-cc-ceEeccCCCEEEEEE
Confidence 2223477889999999 55 688899999999986
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-35 Score=243.15 Aligned_cols=274 Identities=15% Similarity=0.195 Sum_probs=231.9
Q ss_pred CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe
Q 038533 20 SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS 97 (337)
Q Consensus 20 ~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~ 97 (337)
+...|.++.|+ ..+++++-. +|.+.||+++.+...... .-.+.+|.+..|-+... .+++|
T Consensus 12 rSdRVKsVd~HPtePw~la~Ly----nG~V~IWnyetqtmVksf-----eV~~~PvRa~kfiaRkn---------Wiv~G 73 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILAALY----NGDVQIWNYETQTMVKSF-----EVSEVPVRAAKFIARKN---------WIVTG 73 (794)
T ss_pred cCCceeeeecCCCCceEEEeee----cCeeEEEecccceeeeee-----eecccchhhheeeeccc---------eEEEe
Confidence 57889999999 888888886 999999999877654332 33567899999998887 99999
Q ss_pred CC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCc-cchhhhhccCCceeE
Q 038533 98 GD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKG-VVETQLIAHDKEVYD 174 (337)
Q Consensus 98 ~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~ 174 (337)
+| .|+||+.++. +.+..+..|. +.|.+++.+| ...++++++.|-.|++||-+.. .+.+++.+|...|++
T Consensus 74 sDD~~IrVfnynt~--ekV~~FeAH~-----DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTG--EKVKTFEAHS-----DYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ 145 (794)
T ss_pred cCCceEEEEecccc--eeeEEeeccc-----cceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence 96 9999999999 7899999998 9999999999 8889999999999999998764 477889999999999
Q ss_pred EEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecC-CCcEEEEEEecCCEEEEEECCCCCCCe
Q 038533 175 ICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQ-DLRYMATILMDSNKVVILDIRSPTLPV 251 (337)
Q Consensus 175 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~~i~i~d~~~~~~~~ 251 (337)
++|+ +.+.+++++-|++|++|.+.+......+. +|...|+|+.+-+. +..+|++|+.|.. +++||.++ +.++
T Consensus 146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQt-k~CV 220 (794)
T KOG0276|consen 146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQT-KSCV 220 (794)
T ss_pred EEecCCCccceeeeeccccEEEEEcCCCCCceeee---ccccCcceEEeccCCCcceEEecCCCce-EEEeecch-HHHH
Confidence 9999 68899999999999999999887544433 58899999999762 3459999999988 99999999 7889
Q ss_pred EEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCc
Q 038533 252 AELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNK 331 (337)
Q Consensus 252 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 331 (337)
+++.+|...|..+.|+|.-+ ++++|++||+++||+.. +... ...+.-...++++++-.+.+..++.+...|.
T Consensus 221 ~TLeGHt~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~--Ty~l-----E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~ 292 (794)
T KOG0276|consen 221 QTLEGHTNNVSFVFFHPELP-IIISGSEDGTVRIWNSK--TYKL-----EKTLNYGLERVWCIAAHKGDGKIAVGFDEGS 292 (794)
T ss_pred HHhhcccccceEEEecCCCc-EEEEecCCccEEEecCc--ceeh-----hhhhhcCCceEEEEeecCCCCeEEEeccCCc
Confidence 99999999999999999999 99999999999999998 4332 1233334568999998887765444444454
Q ss_pred E
Q 038533 332 M 332 (337)
Q Consensus 332 i 332 (337)
+
T Consensus 293 i 293 (794)
T KOG0276|consen 293 V 293 (794)
T ss_pred E
Confidence 4
No 43
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=228.94 Aligned_cols=287 Identities=15% Similarity=0.235 Sum_probs=245.6
Q ss_pred eeeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcce----ecCCCcCCCCCCCCeEEEecCCCCcccCcC
Q 038533 16 VTHESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSI----KTHPSLSFDHPYPPTKLMFDPNSSSRKSSS 89 (337)
Q Consensus 16 ~~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~----~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~ 89 (337)
..|.....+.|..|+ |++|++|+. ||.|.+|++....... +....+ .-+..+|.|+.|+.|..
T Consensus 208 IKFg~KSh~EcA~FSPDgqyLvsgSv----DGFiEVWny~~GKlrKDLkYQAqd~f-MMmd~aVlci~FSRDsE------ 276 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSPDGQYLVSGSV----DGFIEVWNYTTGKLRKDLKYQAQDNF-MMMDDAVLCISFSRDSE------ 276 (508)
T ss_pred eecccccchhheeeCCCCceEeeccc----cceeeeehhccchhhhhhhhhhhcce-eecccceEEEeecccHH------
Confidence 345567789999999 999999998 9999999987654321 111112 45789999999999998
Q ss_pred CccEEEEeC-C-eEEEEecCCCCccceeeec-CCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh
Q 038533 90 NRHLLASSG-D-FLRLWDVGDSSIEPVAVLN-NSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI 166 (337)
Q Consensus 90 ~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 166 (337)
+||+|+ | .|++|.+.++ .+++.+. .|+ ..|+|+.|+. ++..+++++.|.++++.-+++|++++.+.
T Consensus 277 ---MlAsGsqDGkIKvWri~tG--~ClRrFdrAHt-----kGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfr 345 (508)
T KOG0275|consen 277 ---MLASGSQDGKIKVWRIETG--QCLRRFDRAHT-----KGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFR 345 (508)
T ss_pred ---HhhccCcCCcEEEEEEecc--hHHHHhhhhhc-----cCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhc
Confidence 999999 5 9999999999 6888777 677 8999999998 99999999999999999999999999999
Q ss_pred ccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECC
Q 038533 167 AHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR 245 (337)
Q Consensus 167 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~ 245 (337)
+|.+.|+...|. +|+.+++++.||+|++|+..+.++...+... ..+.+|.++..-|.+...++++...+. +++.++.
T Consensus 346 GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsnt-v~imn~q 423 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNT-VYIMNMQ 423 (508)
T ss_pred CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCe-EEEEecc
Confidence 999999999999 8999999999999999999999987766544 466789999999989999999988887 9999887
Q ss_pred CCCCCeEEeec---ccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCc
Q 038533 246 SPTLPVAELER---HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPD 322 (337)
Q Consensus 246 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 322 (337)
++.++.+.. ..+...+.+.+|.|. ++.+.++|+.++.|.+..+++ ...+.-|...+..++-+|..+.
T Consensus 424 --GQvVrsfsSGkREgGdFi~~~lSpkGe-wiYcigED~vlYCF~~~sG~L-------E~tl~VhEkdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 424 --GQVVRSFSSGKREGGDFINAILSPKGE-WIYCIGEDGVLYCFSVLSGKL-------ERTLPVHEKDVIGLTHHPHQNL 493 (508)
T ss_pred --ceEEeeeccCCccCCceEEEEecCCCc-EEEEEccCcEEEEEEeecCce-------eeeeecccccccccccCcccch
Confidence 556666643 234567778999999 999999999999999985543 2356678899999999999988
Q ss_pred eEEEEcCCcEEEEe
Q 038533 323 WLAIAFSNKMQLLK 336 (337)
Q Consensus 323 l~~~~~d~~i~iw~ 336 (337)
+++-+.||.+++|+
T Consensus 494 lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 494 LASYSEDGLLKLWK 507 (508)
T ss_pred hhhhcccchhhhcC
Confidence 88999999999996
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-35 Score=228.42 Aligned_cols=241 Identities=20% Similarity=0.334 Sum_probs=216.2
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT 144 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 144 (337)
.+|..+|+.+.|+|+-. ++++++ | +|++||..++ ++...+++|. +.+.+++|+. .+.++++
T Consensus 105 ~g~r~~vt~v~~hp~~~---------~v~~as~d~tikv~D~~tg--~~e~~LrGHt-----~sv~di~~~a-~Gk~l~t 167 (406)
T KOG0295|consen 105 AGHRSSVTRVIFHPSEA---------LVVSASEDATIKVFDTETG--ELERSLRGHT-----DSVFDISFDA-SGKYLAT 167 (406)
T ss_pred hccccceeeeeeccCce---------EEEEecCCceEEEEEccch--hhhhhhhccc-----cceeEEEEec-CccEEEe
Confidence 67999999999999998 999997 4 9999999999 5688999999 8899999998 9999999
Q ss_pred eeCCCcEEEEeCCC-ccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEee
Q 038533 145 CSIDTTCTIWDIEK-GVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWN 222 (337)
Q Consensus 145 ~~~dg~i~v~d~~~-~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~ 222 (337)
++.|-.+++||..+ .++++.+.+|+..|.+++|- .++++++++.|.+|+.|++.++-+...+ ++|...+..++.+
T Consensus 168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~---~~h~ewvr~v~v~ 244 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF---PGHSEWVRMVRVN 244 (406)
T ss_pred cCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEec---cCchHhEEEEEec
Confidence 99999999999987 45788888999999999999 5899999999999999999999855444 3567799999999
Q ss_pred cCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCC--------------CCeEEEEcCCCcEEEEeC
Q 038533 223 KQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQS--------------RRHICSVGDDSQAFIWEL 288 (337)
Q Consensus 223 ~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~l~~~~~dg~i~iw~~ 288 (337)
. +|.++++++.|.. +++|-+.+ +++...++.|..+|.+++|-|.. ..++.+++.|++|++||+
T Consensus 245 ~-DGti~As~s~dqt-l~vW~~~t-~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv 321 (406)
T KOG0295|consen 245 Q-DGTIIASCSNDQT-LRVWVVAT-KQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV 321 (406)
T ss_pred C-CeeEEEecCCCce-EEEEEecc-chhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec
Confidence 8 9999999999998 99999998 66678899999999999997742 138999999999999999
Q ss_pred CCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 289 PLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
. + +...+.+.+|...|..++|+|.|++|++++.|+++++|++
T Consensus 322 ~--t-----g~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl 363 (406)
T KOG0295|consen 322 S--T-----GMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL 363 (406)
T ss_pred c--C-----CeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence 9 3 3346689999999999999999999999999999999986
No 45
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=7.2e-35 Score=236.92 Aligned_cols=293 Identities=17% Similarity=0.244 Sum_probs=232.7
Q ss_pred eeeeC-CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCcc
Q 038533 16 VTHES-PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRH 92 (337)
Q Consensus 16 ~~~~~-~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~ 92 (337)
.+++| ...|.++++. |-+|++|+. |..|++||++.....+.....+...-...|++++|++.+. .
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~--------~ 228 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSL----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGD--------Q 228 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccc----cceEEEEecccccccchhhhccCcccccccceeeecCCCC--------e
Confidence 34444 6789999999 999999996 9999999999877766655555556677899999999998 5
Q ss_pred EEEEeCC-eEEEEecCCCC----------ccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccc
Q 038533 93 LLASSGD-FLRLWDVGDSS----------IEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVV 161 (337)
Q Consensus 93 ~l~~~~~-~v~vw~~~~~~----------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~ 161 (337)
+|+..+. ..+|+|-...+ +.-...-++|. ..++|.+|+|.+.+.+++++.||++++||++..+.
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHi-----a~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHI-----AELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCce-----eeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 6666666 99999976542 11223344565 99999999998889999999999999999986542
Q ss_pred -hhhhh-----ccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCC--CceEEEeecCCCcEEEEE
Q 038533 162 -ETQLI-----AHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDT--PLLRLAWNKQDLRYMATI 232 (337)
Q Consensus 162 -~~~~~-----~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~l~~~ 232 (337)
+..++ +..-+++.++|+ +++++|+|..||.|.+||.+.............|.. .|+|+.|++ +|++|++-
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSR 382 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSR 382 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhc
Confidence 22222 234468899999 899999999999999999977655444444445655 899999999 99999999
Q ss_pred EecCCEEEEEECCCCCCCeEEeecc--cceeeEEEeCCCCCCeEEEEcC------CCcEEEEeCCCCCCCCCCCCCceee
Q 038533 233 LMDSNKVVILDIRSPTLPVAELERH--RACVNAIAWAPQSRRHICSVGD------DSQAFIWELPLPPVAGPNGIDPMSM 304 (337)
Q Consensus 233 ~~d~~~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~~ 304 (337)
+.|+. +++||++...+++....+- ..+-+.++|+|+.+ +|++|+. .|.+.+||.. ++.. ...+
T Consensus 383 g~D~t-LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~--t~d~-----v~ki 453 (641)
T KOG0772|consen 383 GFDDT-LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRM--TLDT-----VYKI 453 (641)
T ss_pred cCCCc-eeeeeccccccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEecc--ceee-----EEEe
Confidence 99999 9999999988888766543 23567899999999 9999873 4789999988 5432 3344
Q ss_pred eeCCCceeEEEEccCCCceEEEEcCCcEEEE
Q 038533 305 YSAGSEINQLQWSPAQPDWLAIAFSNKMQLL 335 (337)
Q Consensus 305 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 335 (337)
.-....|..+.|+|.-+.+++++.||.++|+
T Consensus 454 ~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 454 DISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 4457789999999999899999999999986
No 46
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-34 Score=232.83 Aligned_cols=274 Identities=16% Similarity=0.180 Sum_probs=230.2
Q ss_pred CCCceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 20 SPYPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 20 ~~~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
...+|.+++|+ +.-+|+.+ .-.+.||+.......... ......+.++.|..||+ +||+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-----S~rvqly~~~~~~~~k~~-----srFk~~v~s~~fR~DG~---------Llaa 85 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-----SVRVQLYSSVTRSVRKTF-----SRFKDVVYSVDFRSDGR---------LLAA 85 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-----ccEEEEEecchhhhhhhH-----HhhccceeEEEeecCCe---------EEEc
Confidence 35789999999 66777777 678999776544332222 56678899999999999 9999
Q ss_pred eCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeE
Q 038533 97 SGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 97 ~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
|.+ .|+|||+.+. ..++.+..|+ .+|..+.|+|.++..+++|+.|+.+++||+.+......+.+|++.|.+
T Consensus 86 GD~sG~V~vfD~k~r--~iLR~~~ah~-----apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 86 GDESGHVKVFDMKSR--VILRQLYAHQ-----APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred cCCcCcEEEeccccH--HHHHHHhhcc-----CceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 985 9999997665 6788899998 999999999988899999999999999999988876688899999999
Q ss_pred EEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeE
Q 038533 175 ICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVA 252 (337)
Q Consensus 175 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 252 (337)
.+|+ .+.++++|+.||.|++||++.... .. .+. .|..+|..+.+-| .|..+++++.+. +++||+-++++.+.
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~v-~el-nhg~pVe~vl~lp-sgs~iasAgGn~--vkVWDl~~G~qll~ 232 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLTS-RV-VEL-NHGCPVESVLALP-SGSLIASAGGNS--VKVWDLTTGGQLLT 232 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCCc-ee-EEe-cCCCceeeEEEcC-CCCEEEEcCCCe--EEEEEecCCceehh
Confidence 9999 467899999999999999998852 22 222 4778999999999 889999887654 99999998777777
Q ss_pred EeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcE
Q 038533 253 ELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKM 332 (337)
Q Consensus 253 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 332 (337)
.+..|...|+|+++..++. .|++|+-|+.+++||+. . .+......-.++|.+++.+|+++.+++|-.||.+
T Consensus 233 ~~~~H~KtVTcL~l~s~~~-rLlS~sLD~~VKVfd~t--~------~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 233 SMFNHNKTVTCLRLASDST-RLLSGSLDRHVKVFDTT--N------YKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred hhhcccceEEEEEeecCCc-eEeecccccceEEEEcc--c------eEEEEeeecccceeeEEecCCCceEEEeccccee
Confidence 7777999999999999998 99999999999999977 3 1233444568899999999999999999899887
Q ss_pred EE
Q 038533 333 QL 334 (337)
Q Consensus 333 ~i 334 (337)
.+
T Consensus 304 ~~ 305 (487)
T KOG0310|consen 304 SI 305 (487)
T ss_pred ee
Confidence 54
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2e-34 Score=224.49 Aligned_cols=237 Identities=17% Similarity=0.254 Sum_probs=212.8
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT 144 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 144 (337)
.+|.+-|.|+++.|.+. +|++|+ | +++|||+.++ ++..++.+|. ..|..+++|+ ...++++
T Consensus 148 ~gHlgWVr~vavdP~n~---------wf~tgs~DrtikIwDlatg--~LkltltGhi-----~~vr~vavS~-rHpYlFs 210 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNE---------WFATGSADRTIKIWDLATG--QLKLTLTGHI-----ETVRGVAVSK-RHPYLFS 210 (460)
T ss_pred hhccceEEEEeeCCCce---------eEEecCCCceeEEEEcccC--eEEEeecchh-----heeeeeeecc-cCceEEE
Confidence 68999999999999988 999998 6 9999999999 7888999998 9999999998 8889999
Q ss_pred eeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeec
Q 038533 145 CSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNK 223 (337)
Q Consensus 145 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 223 (337)
++.|+.|+.||++..+.++.+.+|-..|.+++.+ .-+.|++|+.|.++++||+|+......+ .+|..+|.++.+.|
T Consensus 211 ~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l---~GH~~~V~~V~~~~ 287 (460)
T KOG0285|consen 211 AGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVL---SGHTNPVASVMCQP 287 (460)
T ss_pred ecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEe---cCCCCcceeEEeec
Confidence 9999999999999999999999999999999999 4789999999999999999998744443 36889999999998
Q ss_pred CCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCcee
Q 038533 224 QDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMS 303 (337)
Q Consensus 224 ~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 303 (337)
....+++|+.|+. |++||++. ++...++..|...+.+++.+|... .+|+++.| .|+-|++..+ .....
T Consensus 288 -~dpqvit~S~D~t-vrlWDl~a-gkt~~tlt~hkksvral~lhP~e~-~fASas~d-nik~w~~p~g-------~f~~n 355 (460)
T KOG0285|consen 288 -TDPQVITGSHDST-VRLWDLRA-GKTMITLTHHKKSVRALCLHPKEN-LFASASPD-NIKQWKLPEG-------EFLQN 355 (460)
T ss_pred -CCCceEEecCCce-EEEeeecc-CceeEeeecccceeeEEecCCchh-hhhccCCc-cceeccCCcc-------chhhc
Confidence 7778899999999 99999998 556778888999999999999987 88888876 5899999833 33445
Q ss_pred eeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 304 MYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 304 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
+.+|..-|++++.+.|+ .+++++.+|.+.+|+
T Consensus 356 lsgh~~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 356 LSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred cccccceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 77899999999999998 789999999999997
No 48
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.7e-33 Score=226.83 Aligned_cols=284 Identities=19% Similarity=0.300 Sum_probs=237.7
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
+|..+++-..|+ |.++|+|.. .|.|+||+....+..++. .+ ....++|..|+|+++++ ++.|+
T Consensus 57 EH~~~vtVAkySPsG~yiASGD~----sG~vRIWdtt~~~hiLKn--ef-~v~aG~I~Di~Wd~ds~--------RI~av 121 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASGDV----SGKVRIWDTTQKEHILKN--EF-QVLAGPIKDISWDFDSK--------RIAAV 121 (603)
T ss_pred cccceeEEEEeCCCceEEeecCC----cCcEEEEeccCcceeeee--ee-eecccccccceeCCCCc--------EEEEE
Confidence 567889999999 999999997 999999998876544443 22 45679999999999999 55556
Q ss_pred eCC-----eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCc
Q 038533 97 SGD-----FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKE 171 (337)
Q Consensus 97 ~~~-----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 171 (337)
|.+ .+.+|| ++ ..+-.+.+|. ..|.+++|-|..+-.+++|+.|++|.+|+-.--+...++..|..-
T Consensus 122 GEGrerfg~~F~~D--SG--~SvGei~GhS-----r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskF 192 (603)
T KOG0318|consen 122 GEGRERFGHVFLWD--SG--NSVGEITGHS-----RRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKF 192 (603)
T ss_pred ecCccceeEEEEec--CC--Cccceeeccc-----eeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccc
Confidence 553 455555 44 4567888998 999999999977889999999999999987666666778889999
Q ss_pred eeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCC--
Q 038533 172 VYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT-- 248 (337)
Q Consensus 172 v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~-- 248 (337)
|+++.|+ ++.+|++++.||++.+||-.+++....+.....|++.|.+++|+| ++..+++++.|.. ++|||+.+..
T Consensus 193 V~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsP-Ds~~~~T~SaDkt-~KIWdVs~~slv 270 (603)
T KOG0318|consen 193 VNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSP-DSTQFLTVSADKT-IKIWDVSTNSLV 270 (603)
T ss_pred eeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECC-CCceEEEecCCce-EEEEEeeccceE
Confidence 9999999 899999999999999999999998888776778999999999999 9999999999999 9999976421
Q ss_pred ----------------------------------------CCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeC
Q 038533 249 ----------------------------------------LPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWEL 288 (337)
Q Consensus 249 ----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 288 (337)
.+++.+.+|...|+++..+|+++ +|++|+.||.|.-|+.
T Consensus 271 ~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~ 349 (603)
T KOG0318|consen 271 STWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDS 349 (603)
T ss_pred EEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEec
Confidence 12334457999999999999998 9999999999999999
Q ss_pred CCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 289 PLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
..+.. ..+.-..|...|.+++-+..+ .+++++.|.++++..
T Consensus 350 ~~g~~------~~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~ 390 (603)
T KOG0318|consen 350 GSGTS------DRLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVIS 390 (603)
T ss_pred CCccc------cccccccccceEEEEeecCCC-cEEEEecCCeEEEEe
Confidence 94331 233446799999999998866 699999999999874
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.5e-33 Score=259.29 Aligned_cols=270 Identities=18% Similarity=0.301 Sum_probs=212.9
Q ss_pred cceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCC------cccee
Q 038533 44 TNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSS------IEPVA 115 (337)
Q Consensus 44 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~------~~~~~ 115 (337)
+|.+++|+...-.........-...|...|.+++|+|++. ++|+|+ | .|+||++.... ..+..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~---------~latgg~D~~I~iwd~~~~~~~~~~~~~~~~ 527 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGE---------FFATAGVNKKIKIFECESIIKDGRDIHYPVV 527 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCC---------EEEEEeCCCEEEEEECCcccccccccccceE
Confidence 4556676655332222111111246899999999999998 999888 5 99999986421 01222
Q ss_pred eecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC--CCcEEEEEcCCCeEE
Q 038533 116 VLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG--EARVFASVSADGSVR 193 (337)
Q Consensus 116 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~ 193 (337)
.+.++ ..+.+++|++..+.+|++++.||.|++||+.+++.+..+.+|...|++++|+ ++.+|++|+.||.|+
T Consensus 528 ~~~~~------~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~ 601 (793)
T PLN00181 528 ELASR------SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVK 601 (793)
T ss_pred Eeccc------CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEE
Confidence 23322 6789999998668899999999999999999999888899999999999998 478999999999999
Q ss_pred EEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCe
Q 038533 194 IFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRH 273 (337)
Q Consensus 194 iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 273 (337)
+||++++.....+. +...+.++.|++.++.+|++|+.|+. |++||+++...++..+.+|...|.++.|. ++. +
T Consensus 602 iWd~~~~~~~~~~~----~~~~v~~v~~~~~~g~~latgs~dg~-I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~ 674 (793)
T PLN00181 602 LWSINQGVSIGTIK----TKANICCVQFPSESGRSLAFGSADHK-VYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-T 674 (793)
T ss_pred EEECCCCcEEEEEe----cCCCeEEEEEeCCCCCEEEEEeCCCe-EEEEECCCCCccceEecCCCCCEEEEEEe-CCC-E
Confidence 99999887554443 23578999997668999999999998 99999998655677888999999999997 566 8
Q ss_pred EEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 274 ICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 274 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
|++++.|+.|++||++.+.... .......+.+|...+..++|+|+++++++++.|+.|++|+
T Consensus 675 lvs~s~D~~ikiWd~~~~~~~~-~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 675 LVSSSTDNTLKLWDLSMSISGI-NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred EEEEECCCEEEEEeCCCCcccc-CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 9999999999999998321110 1122346678999999999999999999999999999997
No 50
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=5.7e-33 Score=207.68 Aligned_cols=278 Identities=19% Similarity=0.278 Sum_probs=227.5
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.+...|.+++|+ |..||+|+. |+++.+|+++........ .. .+|.+.|-.++|+|..+ .++++
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~----dktv~v~n~e~~r~~~~~--~~-~gh~~svdql~w~~~~~--------d~~at 82 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSF----DKTVSVWNLERDRFRKEL--VY-RGHTDSVDQLCWDPKHP--------DLFAT 82 (313)
T ss_pred hhhhcceEEEEcccCceeeeccc----CCceEEEEecchhhhhhh--cc-cCCCcchhhheeCCCCC--------cceEE
Confidence 356789999999 999999998 999999999877333222 22 78999999999999876 57777
Q ss_pred eC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeE
Q 038533 97 SG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 97 ~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
++ | +|++||...+ ++........ .. .-+.|+| +++++++++.|..|...|.++.+.+...+ ....++.
T Consensus 83 as~dk~ir~wd~r~~--k~~~~i~~~~-----en-i~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne 152 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSG--KCTARIETKG-----EN-INITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNE 152 (313)
T ss_pred ecCCceEEEEEeccC--cEEEEeeccC-----cc-eEEEEcC-CCCEEEEecCcccEEEEEecccceeehhc-ccceeee
Confidence 66 5 9999999999 4555554432 33 3689999 99999999999999999999888776655 4566888
Q ss_pred EEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEE
Q 038533 175 ICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAE 253 (337)
Q Consensus 175 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 253 (337)
++|+ ++++|+.....|.|.|......+....+ ..|...+.|+.|+| +|++|++|+.|.. +.+||+.. -.+++.
T Consensus 153 ~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si---~AH~snCicI~f~p-~GryfA~GsADAl-vSLWD~~E-LiC~R~ 226 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI---KAHPSNCICIEFDP-DGRYFATGSADAL-VSLWDVDE-LICERC 226 (313)
T ss_pred eeecCCCCEEEEecCCceEEEEecccccccccc---ccCCcceEEEEECC-CCceEeeccccce-eeccChhH-hhhhee
Confidence 9999 7888888788899999998876644333 35789999999999 9999999999998 99999987 567888
Q ss_pred eecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcC----
Q 038533 254 LERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFS---- 329 (337)
Q Consensus 254 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 329 (337)
+..+.-+|+.+.|+-+|+ +||+|++|-.|-|=+++.+. ......+.++...++|+|..+.|+-++.|
T Consensus 227 isRldwpVRTlSFS~dg~-~lASaSEDh~IDIA~vetGd--------~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d 297 (313)
T KOG1407|consen 227 ISRLDWPVRTLSFSHDGR-MLASASEDHFIDIAEVETGD--------RVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGD 297 (313)
T ss_pred eccccCceEEEEeccCcc-eeeccCccceEEeEecccCC--------eEEEeeccCCceeEEecCCCceeeEEecCCCCc
Confidence 888999999999999999 99999999999999988332 34445688999999999999877755543
Q ss_pred -----CcEEEEe
Q 038533 330 -----NKMQLLK 336 (337)
Q Consensus 330 -----~~i~iw~ 336 (337)
|.+++|-
T Consensus 298 ~~reag~vKiFG 309 (313)
T KOG1407|consen 298 SNREAGTVKIFG 309 (313)
T ss_pred cccccceeEEec
Confidence 5677763
No 51
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.9e-35 Score=228.15 Aligned_cols=275 Identities=15% Similarity=0.218 Sum_probs=232.2
Q ss_pred eeCCCceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEE
Q 038533 18 HESPYPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLL 94 (337)
Q Consensus 18 ~~~~~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l 94 (337)
..|.+.|+|++=+ -..+|+|+. ||.|+||++......... ..|.+.|..|++.. +. ++
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~----DG~VkiWnlsqR~~~~~f-----~AH~G~V~Gi~v~~-~~---------~~ 123 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSC----DGEVKIWNLSQRECIRTF-----KAHEGLVRGICVTQ-TS---------FF 123 (433)
T ss_pred cccccccchhhcCcchhhhhhcccc----CceEEEEehhhhhhhhee-----ecccCceeeEEecc-cc---------eE
Confidence 3567889999999 357899997 999999999876655544 78999999999987 43 67
Q ss_pred EEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCcee
Q 038533 95 ASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVY 173 (337)
Q Consensus 95 ~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~ 173 (337)
.+|.| +|+.|.+... +..++.+. ..+..++-+. ..+.++|+++ .|.|||.+...++..+.-....|.
T Consensus 124 tvgdDKtvK~wk~~~~---p~~tilg~------s~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~ 191 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGP---PLHTILGK------SVYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSIS 191 (433)
T ss_pred EecCCcceeeeeccCC---cceeeecc------cccccccccc-ccccccccCc--eeeecccccCCccceeecCCCcee
Confidence 66777 9999998874 56666654 5677888776 7789999985 599999999899999987788899
Q ss_pred EEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCe
Q 038533 174 DICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPV 251 (337)
Q Consensus 174 ~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~ 251 (337)
++.|+ ....|+++..|+.|.+||+|+......+... ..-+.++|+| ....++++++|.+ ++.||+|....|+
T Consensus 192 svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~----mRTN~IswnP-eafnF~~a~ED~n-lY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 192 SVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT----MRTNTICWNP-EAFNFVAANEDHN-LYTYDMRNLSRPL 265 (433)
T ss_pred EEecCCCcchheeeeccCCceEEEecccCCccceeeee----ccccceecCc-cccceeecccccc-ceehhhhhhcccc
Confidence 99999 4778999999999999999999876666543 5668899999 9999999999999 9999999999999
Q ss_pred EEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCc
Q 038533 252 AELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNK 331 (337)
Q Consensus 252 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 331 (337)
....+|.+.|.++.|+|.|+ -+++||.|.+|+||..+.+... +.. ...--..|.++.||-|.+++++|+.|+.
T Consensus 266 ~v~~dhvsAV~dVdfsptG~-EfvsgsyDksIRIf~~~~~~SR-----diY-htkRMq~V~~Vk~S~Dskyi~SGSdd~n 338 (433)
T KOG0268|consen 266 NVHKDHVSAVMDVDFSPTGQ-EFVSGSYDKSIRIFPVNHGHSR-----DIY-HTKRMQHVFCVKYSMDSKYIISGSDDGN 338 (433)
T ss_pred hhhcccceeEEEeccCCCcc-hhccccccceEEEeecCCCcch-----hhh-hHhhhheeeEEEEeccccEEEecCCCcc
Confidence 99999999999999999999 9999999999999999943311 111 1122356999999999999999999999
Q ss_pred EEEEe
Q 038533 332 MQLLK 336 (337)
Q Consensus 332 i~iw~ 336 (337)
|++|+
T Consensus 339 vRlWk 343 (433)
T KOG0268|consen 339 VRLWK 343 (433)
T ss_pred eeeee
Confidence 99997
No 52
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.9e-35 Score=229.63 Aligned_cols=230 Identities=16% Similarity=0.291 Sum_probs=200.5
Q ss_pred CCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee
Q 038533 69 HPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS 146 (337)
Q Consensus 69 ~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 146 (337)
....|.|+.+. .. .+++|. | +|+|||.++. .+...+.+|+ +.|.|+.| +...+++|+
T Consensus 196 ~skgVYClQYD--D~---------kiVSGlrDnTikiWD~n~~--~c~~~L~GHt-----GSVLCLqy---d~rviisGS 254 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DE---------KIVSGLRDNTIKIWDKNSL--ECLKILTGHT-----GSVLCLQY---DERVIVSGS 254 (499)
T ss_pred cCCceEEEEec--ch---------hhhcccccCceEEeccccH--HHHHhhhcCC-----CcEEeeec---cceEEEecC
Confidence 45678999884 33 778887 5 9999999988 7899999999 99999998 457999999
Q ss_pred CCCcEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCC
Q 038533 147 IDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDL 226 (337)
Q Consensus 147 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 226 (337)
.|.+|++||.++++++.++..|...|..+.|+ +.++++++.|.++.+||+.............+|...++.+.| +.
T Consensus 255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---d~ 330 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DD 330 (499)
T ss_pred CCceEEEEeccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc---cc
Confidence 99999999999999999999999999999997 568999999999999999988754444444468899999999 56
Q ss_pred cEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeee
Q 038533 227 RYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYS 306 (337)
Q Consensus 227 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 306 (337)
+++++++.|.+ |++|++.+ ...++++.+|...|.|+.+. ++ ++++|+.|.+|++||++.+. ....+.+
T Consensus 331 kyIVsASgDRT-ikvW~~st-~efvRtl~gHkRGIAClQYr--~r-lvVSGSSDntIRlwdi~~G~-------cLRvLeG 398 (499)
T KOG0281|consen 331 KYIVSASGDRT-IKVWSTST-CEFVRTLNGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECGA-------CLRVLEG 398 (499)
T ss_pred ceEEEecCCce-EEEEeccc-eeeehhhhcccccceehhcc--Ce-EEEecCCCceEEEEeccccH-------HHHHHhc
Confidence 79999999998 99999998 77899999999999888774 56 99999999999999999333 3457889
Q ss_pred CCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 307 AGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 307 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
|+.-|.++.|. .+.+++++.||+|+||++
T Consensus 399 HEeLvRciRFd--~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 399 HEELVRCIRFD--NKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred hHHhhhheeec--CceeeeccccceEEEEec
Confidence 99999999996 447999999999999985
No 53
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=236.96 Aligned_cols=261 Identities=16% Similarity=0.218 Sum_probs=217.5
Q ss_pred cceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCCccceeeecCCC
Q 038533 44 TNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSSIEPVAVLNNSK 121 (337)
Q Consensus 44 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~ 121 (337)
+..+.+|+.+. ..+.. .+ .+..+.|..++|-.... .+||.+++ .+|+|++.+.. +. .+.+|+
T Consensus 302 eQnl~l~d~~~--l~i~k--~i-vG~ndEI~Dm~~lG~e~--------~~laVATNs~~lr~y~~~~~~--c~-ii~GH~ 365 (775)
T KOG0319|consen 302 EQNLFLYDEDE--LTIVK--QI-VGYNDEILDMKFLGPEE--------SHLAVATNSPELRLYTLPTSY--CQ-IIPGHT 365 (775)
T ss_pred cceEEEEEccc--cEEeh--hh-cCCchhheeeeecCCcc--------ceEEEEeCCCceEEEecCCCc--eE-EEeCch
Confidence 89999975543 33332 23 67888999999864433 38888886 99999998873 33 889998
Q ss_pred CCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc----chhhhhccCCceeEEEeC--CCcEEEEEcCCCeEEEE
Q 038533 122 SSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV----VETQLIAHDKEVYDICWG--EARVFASVSADGSVRIF 195 (337)
Q Consensus 122 ~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~iw 195 (337)
..|.+++... ++.+|++|+.|.++++|.++++. ++....+|...|.+++++ ....|++++.|+++++|
T Consensus 366 -----e~vlSL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W 439 (775)
T KOG0319|consen 366 -----EAVLSLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLW 439 (775)
T ss_pred -----hheeeeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEe
Confidence 9999999433 67899999999999999885443 456667999999999999 47799999999999999
Q ss_pred ECCCCCCc--eeee----cCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCC
Q 038533 196 DLRDKEHS--TIIY----ESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQ 269 (337)
Q Consensus 196 d~~~~~~~--~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (337)
++...+.. .... ....|+..|++++.+| +..++++|+.|.. .++|++.. ...+.++.+|...|.++.|+|.
T Consensus 440 ~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDkt-aKiW~le~-~~l~~vLsGH~RGvw~V~Fs~~ 516 (775)
T KOG0319|consen 440 DLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKT-AKIWDLEQ-LRLLGVLSGHTRGVWCVSFSKN 516 (775)
T ss_pred cCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccc-eeeecccC-ceEEEEeeCCccceEEEEeccc
Confidence 99873321 1111 2335889999999999 9999999999999 99999995 6788999999999999999999
Q ss_pred CCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 270 SRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 270 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
.+ +++|+|.|++|+||.+. +.. ....+.+|...|..+.|-.++..|++++.||.+++|++
T Consensus 517 dq-~laT~SgD~TvKIW~is--~fS-----ClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 517 DQ-LLATCSGDKTVKIWSIS--TFS-----CLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred cc-eeEeccCCceEEEEEec--cce-----eeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 98 99999999999999999 432 34578899999999999999999999999999999986
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-34 Score=209.67 Aligned_cols=239 Identities=14% Similarity=0.174 Sum_probs=201.3
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEe
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTC 145 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 145 (337)
..++++|.++.|+-+++ +.|++|+| +|++|+...+ .+++++.+|. ..|..++.+. +...|++|
T Consensus 14 ~~~qgaV~avryN~dGn--------Y~ltcGsdrtvrLWNp~rg--~liktYsghG-----~EVlD~~~s~-Dnskf~s~ 77 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGN--------YCLTCGSDRTVRLWNPLRG--ALIKTYSGHG-----HEVLDAALSS-DNSKFASC 77 (307)
T ss_pred cccccceEEEEEccCCC--------EEEEcCCCceEEeeccccc--ceeeeecCCC-----ceeeeccccc-cccccccC
Confidence 67899999999999999 34444457 9999999999 7999999998 8899999987 89999999
Q ss_pred eCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecC
Q 038533 146 SIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQ 224 (337)
Q Consensus 146 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 224 (337)
+.|..+.+||+++|+.++.+.+|.+.|+.++|+ +...+++|+.|.++++||.|+.......... .....|.++..
T Consensus 78 GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v--- 153 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDV--- 153 (307)
T ss_pred CCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-hhcCceeEEEe---
Confidence 999999999999999999999999999999999 7889999999999999999987643322211 24578899988
Q ss_pred CCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceee
Q 038533 225 DLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSM 304 (337)
Q Consensus 225 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 304 (337)
.+..+++|+.||+ ++.||+|. ++...... ..+|+++.|+++++ ..+.++.|+++++.|-+.++ .....
T Consensus 154 ~~heIvaGS~DGt-vRtydiR~-G~l~sDy~--g~pit~vs~s~d~n-c~La~~l~stlrLlDk~tGk-------lL~sY 221 (307)
T KOG0316|consen 154 AEHEIVAGSVDGT-VRTYDIRK-GTLSSDYF--GHPITSVSFSKDGN-CSLASSLDSTLRLLDKETGK-------LLKSY 221 (307)
T ss_pred cccEEEeeccCCc-EEEEEeec-ceeehhhc--CCcceeEEecCCCC-EEEEeeccceeeecccchhH-------HHHHh
Confidence 6789999999999 99999998 44333333 45899999999999 99999999999999998433 23355
Q ss_pred eeCCCc--eeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 305 YSAGSE--INQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 305 ~~~~~~--v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
.+|... -...+++.....++++++||.|.+|++
T Consensus 222 kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 222 KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred cccccceeeeeeeecccceeEEeccCCceEEEEEe
Confidence 666543 456677777778999999999999986
No 55
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.9e-32 Score=197.95 Aligned_cols=299 Identities=16% Similarity=0.188 Sum_probs=233.4
Q ss_pred ceeeeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCc------ceec----CCCcCCCCCCCCeEEEecCC
Q 038533 14 NSVTHESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESL------SIKT----HPSLSFDHPYPPTKLMFDPN 81 (337)
Q Consensus 14 ~~~~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~------~~~~----~~~~~~~~~~~i~~i~~~~~ 81 (337)
.+-.+.....|.+++|+ |.+.|+|++ ..+++|-.+..-.. .... .......|.+.|.|.+|+|+
T Consensus 25 ~i~~l~dsqairav~fhp~g~lyavgsn----skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAFHPAGGLYAVGSN----SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred EEEEecchhheeeEEecCCCceEEeccC----CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence 34455667899999999 999999998 89999976542111 0000 00123578999999999999
Q ss_pred CCcccCcCCccEEEEeCC--eEEEEecCCCCc---cceeeecCCCCCcccCCeeEEEeecC---CCCeEEEee-CCCcEE
Q 038533 82 SSSRKSSSNRHLLASSGD--FLRLWDVGDSSI---EPVAVLNNSKSSEFCAPLTSFDWNEI---EPKRIGTCS-IDTTCT 152 (337)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~-~dg~i~ 152 (337)
+. ++|+|++ +|++..++.... .....+.-|. +.|..++|... .+.+|++++ .|..|+
T Consensus 101 ge---------liatgsndk~ik~l~fn~dt~~~~g~dle~nmhd-----gtirdl~fld~~~s~~~il~s~gagdc~iy 166 (350)
T KOG0641|consen 101 GE---------LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHD-----GTIRDLAFLDDPESGGAILASAGAGDCKIY 166 (350)
T ss_pred cC---------eEEecCCCceEEEEecccccccccCcceeeeecC-----CceeeeEEecCCCcCceEEEecCCCcceEE
Confidence 99 9999994 888887765421 1233455566 89999999641 234666665 466777
Q ss_pred EEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCC----CCCCceEEEeecCCCcE
Q 038533 153 IWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQ----PDTPLLRLAWNKQDLRY 228 (337)
Q Consensus 153 v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~ 228 (337)
+-|..+++....+.+|.+.|.++---++-.+++|+.|.+|++||++-..+...+..... ....+.+++..| .+++
T Consensus 167 ~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrl 245 (350)
T KOG0641|consen 167 ITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRL 245 (350)
T ss_pred EeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-Ccce
Confidence 77999999999999999999877433688999999999999999998876555433211 235789999999 9999
Q ss_pred EEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCC
Q 038533 229 MATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAG 308 (337)
Q Consensus 229 l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 308 (337)
|++|..|.. ..+||+|. +++++.+..|...|.++.|+|... ++++++.|..|++-|+.-. +.. .....+...|.
T Consensus 246 l~sg~~dss-c~lydirg-~r~iq~f~phsadir~vrfsp~a~-yllt~syd~~ikltdlqgd-la~--el~~~vv~ehk 319 (350)
T KOG0641|consen 246 LASGHADSS-CMLYDIRG-GRMIQRFHPHSADIRCVRFSPGAH-YLLTCSYDMKIKLTDLQGD-LAH--ELPIMVVAEHK 319 (350)
T ss_pred eeeccCCCc-eEEEEeeC-CceeeeeCCCccceeEEEeCCCce-EEEEecccceEEEeecccc-hhh--cCceEEEEecc
Confidence 999999998 99999998 778999999999999999999887 9999999999999999821 111 11233666799
Q ss_pred CceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 309 SEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 309 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
..+..+.|+|+.-.+++.+.|.++.+|-+
T Consensus 320 dk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 320 DKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred CceEEEEecCccceeeeccCcceEEEecc
Confidence 99999999999988899999999999953
No 56
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.6e-34 Score=235.95 Aligned_cols=242 Identities=15% Similarity=0.241 Sum_probs=215.7
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEe-CC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASS-GD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT 144 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~-~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 144 (337)
..+..+|.++.|+|..+ .+.++ .. .|.|||.++. ..++.+.-.. -||.+..|-+ ..+.+++
T Consensus 10 ~~rSdRVKsVd~HPteP---------w~la~LynG~V~IWnyetq--tmVksfeV~~-----~PvRa~kfia-RknWiv~ 72 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEP---------WILAALYNGDVQIWNYETQ--TMVKSFEVSE-----VPVRAAKFIA-RKNWIVT 72 (794)
T ss_pred hccCCceeeeecCCCCc---------eEEEeeecCeeEEEecccc--eeeeeeeecc-----cchhhheeee-ccceEEE
Confidence 45889999999999998 55554 45 9999999998 6777777666 8999999988 8899999
Q ss_pred eeCCCcEEEEeCCCccchhhhhccCCceeEEEeCC-CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeec
Q 038533 145 CSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGE-ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNK 223 (337)
Q Consensus 145 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 223 (337)
|+.|..|+||+.++++.+..+.+|.+.|.+++.+| ..++++++.|-+|++||....=.....++. |.-.|++++|+|
T Consensus 73 GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG--H~HyVMqv~fnP 150 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG--HEHYVMQVAFNP 150 (794)
T ss_pred ecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC--cceEEEEEEecC
Confidence 99999999999999999999999999999999994 779999999999999999887655666665 778999999999
Q ss_pred CCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCC-CCeEEEEcCCCcEEEEeCCCCCCCCCCCCCce
Q 038533 224 QDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQS-RRHICSVGDDSQAFIWELPLPPVAGPNGIDPM 302 (337)
Q Consensus 224 ~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~ 302 (337)
.+.+.+++++.|++ |++|.+.+ ..+..++.+|...|+++.+-+.| +.+|++|+.|..|+|||.. + .....
T Consensus 151 kD~ntFaS~sLDrT-VKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ--t-----k~CV~ 221 (794)
T KOG0276|consen 151 KDPNTFASASLDRT-VKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ--T-----KSCVQ 221 (794)
T ss_pred CCccceeeeecccc-EEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecc--h-----HHHHH
Confidence 99999999999999 99999998 56789999999999999998755 2399999999999999999 3 12344
Q ss_pred eeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 303 SMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 303 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
.+.+|...|..+.|+|.-+.++++++||+++||+
T Consensus 222 TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 222 TLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN 255 (794)
T ss_pred HhhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence 7889999999999999999999999999999996
No 57
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-33 Score=231.62 Aligned_cols=272 Identities=18% Similarity=0.249 Sum_probs=224.9
Q ss_pred eeEEEEe-cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-e
Q 038533 24 LYAMAVC-GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-F 100 (337)
Q Consensus 24 v~~~~~s-~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~ 100 (337)
..-++|+ .+.||+|. ...|.+|+-......... .-+.+.|+++.|+++|. +||+|. + .
T Consensus 180 ~nlldWss~n~laVal-----g~~vylW~~~s~~v~~l~-----~~~~~~vtSv~ws~~G~---------~LavG~~~g~ 240 (484)
T KOG0305|consen 180 LNLLDWSSANVLAVAL-----GQSVYLWSASSGSVTELC-----SFGEELVTSVKWSPDGS---------HLAVGTSDGT 240 (484)
T ss_pred hhHhhcccCCeEEEEe-----cceEEEEecCCCceEEeE-----ecCCCceEEEEECCCCC---------EEEEeecCCe
Confidence 3446777 88999998 789999876655432222 22288999999999999 999987 4 9
Q ss_pred EEEEecCCCCccceeeecC-CCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhh-hhccCCceeEEEeC
Q 038533 101 LRLWDVGDSSIEPVAVLNN-SKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQ-LIAHDKEVYDICWG 178 (337)
Q Consensus 101 v~vw~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~~~~v~~~~~~ 178 (337)
|.|||.... +....+.+ |. ..|.+++|+ ...+.+|+.|+.|..+|++..+.... +.+|...|..++|+
T Consensus 241 v~iwD~~~~--k~~~~~~~~h~-----~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws 310 (484)
T KOG0305|consen 241 VQIWDVKEQ--KKTRTLRGSHA-----SRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS 310 (484)
T ss_pred EEEEehhhc--cccccccCCcC-----ceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC
Confidence 999999988 66777777 77 999999995 58999999999999999998875554 88999999999999
Q ss_pred -CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEE--ecCCEEEEEECCCCCCCeEEee
Q 038533 179 -EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATIL--MDSNKVVILDIRSPTLPVAELE 255 (337)
Q Consensus 179 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d~~~i~i~d~~~~~~~~~~~~ 255 (337)
++.++++|+.|+.+.|||....+....+. .|...|..++|+|....+||+|+ .|+. |++||..+ +..+..+.
T Consensus 311 ~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~---~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~-g~~i~~vd 385 (484)
T KOG0305|consen 311 PDGNQLASGGNDNVVFIWDGLSPEPKFTFT---EHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNT-GARIDSVD 385 (484)
T ss_pred CCCCeeccCCCccceEeccCCCccccEEEe---ccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCC-CcEecccc
Confidence 89999999999999999996665433332 47899999999999999999965 4666 99999997 65666665
Q ss_pred cccceeeEEEeCCCCCCeEEEE-cCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEE
Q 038533 256 RHRACVNAIAWAPQSRRHICSV-GDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQL 334 (337)
Q Consensus 256 ~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 334 (337)
-...|.++.|++..+.++.+- ..++.|.||+.. ++. ....+.+|..+|..++++|||..+++++.|.++++
T Consensus 386 -tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p--s~~-----~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrf 457 (484)
T KOG0305|consen 386 -TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP--SMK-----LVAELLGHTSRVLYLALSPDGETIVTGAADETLRF 457 (484)
T ss_pred -cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc--ccc-----eeeeecCCcceeEEEEECCCCCEEEEecccCcEEe
Confidence 357899999999986344443 367799999998 533 25578899999999999999999999999999999
Q ss_pred EeC
Q 038533 335 LKV 337 (337)
Q Consensus 335 w~l 337 (337)
|++
T Consensus 458 w~~ 460 (484)
T KOG0305|consen 458 WNL 460 (484)
T ss_pred ccc
Confidence 986
No 58
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=2e-33 Score=215.22 Aligned_cols=296 Identities=15% Similarity=0.235 Sum_probs=233.4
Q ss_pred CCccceeeeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCC-----------Cccee---cCCCcCCCCCCCC
Q 038533 10 LRSENSVTHESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPE-----------SLSIK---THPSLSFDHPYPP 73 (337)
Q Consensus 10 ~~~~~~~~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~-----------~~~~~---~~~~~~~~~~~~i 73 (337)
...+..+...|..++.+.+|+ |.++|+|+. |-.|+|.+.+.. +.... ...++ ..|.++|
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsa----D~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~dev 175 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSA----DASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEV 175 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCcEEEccCC----cceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcc
Confidence 344556667789999999999 999999998 999999887611 01111 11123 7899999
Q ss_pred eEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCcc-ceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCc
Q 038533 74 TKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIE-PVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTT 150 (337)
Q Consensus 74 ~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 150 (337)
+++.|+|... +|++|+ | +|++||+.....+ ..+.++. . .+|.++.|+| .|.++++|.....
T Consensus 176 n~l~FHPre~---------ILiS~srD~tvKlFDfsK~saKrA~K~~qd-~-----~~vrsiSfHP-sGefllvgTdHp~ 239 (430)
T KOG0640|consen 176 NDLDFHPRET---------ILISGSRDNTVKLFDFSKTSAKRAFKVFQD-T-----EPVRSISFHP-SGEFLLVGTDHPT 239 (430)
T ss_pred cceeecchhh---------eEEeccCCCeEEEEecccHHHHHHHHHhhc-c-----ceeeeEeecC-CCceEEEecCCCc
Confidence 9999999998 999999 5 9999999876322 2233332 2 6899999999 9999999999999
Q ss_pred EEEEeCCCccchhhh---hccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCC
Q 038533 151 CTIWDIEKGVVETQL---IAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDL 226 (337)
Q Consensus 151 i~v~d~~~~~~~~~~---~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 226 (337)
+++||+++-++...- ..|.+.|+++.++ .+++.++++.||.|++||--+.++...+... +....|.+..|.. ++
T Consensus 240 ~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~A-H~gsevcSa~Ftk-n~ 317 (430)
T KOG0640|consen 240 LRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNA-HGGSEVCSAVFTK-NG 317 (430)
T ss_pred eeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhh-cCCceeeeEEEcc-CC
Confidence 999999998754332 3789999999999 7999999999999999999999888776655 3346789999998 99
Q ss_pred cEEEEEEecCCEEEEEECCCCCCCeEEeecc-----cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCc
Q 038533 227 RYMATILMDSNKVVILDIRSPTLPVAELERH-----RACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDP 301 (337)
Q Consensus 227 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 301 (337)
+++++.+.|.. +++|.+.+ ++++..+.+- ..--+...|+....++|.---..+.++-||.+ +..+ ..
T Consensus 318 kyiLsSG~DS~-vkLWEi~t-~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaR--tadr----~~ 389 (430)
T KOG0640|consen 318 KYILSSGKDST-VKLWEIST-GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDAR--TADR----VA 389 (430)
T ss_pred eEEeecCCcce-eeeeeecC-CceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeecccc--chhh----hh
Confidence 99999999998 99999998 6667776543 11224456777666333333356789999999 4222 23
Q ss_pred eeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 302 MSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 302 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
+...+|.+.+..+.-||.++.+++++.|-.+++|.
T Consensus 390 l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 390 LLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred hcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 45668999999999999999999999999999995
No 59
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=228.36 Aligned_cols=280 Identities=18% Similarity=0.287 Sum_probs=228.6
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.|.+.|..+.|- ...|++|+. |..|++|+...++..+.. .+ .+..+.|+.+.|.+++. ++||+
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~----Dr~Ik~W~v~~~k~~~~~--tL-aGs~g~it~~d~d~~~~--------~~iAa 237 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGS----DRIIKLWNVLGEKSELIS--TL-AGSLGNITSIDFDSDNK--------HVIAA 237 (459)
T ss_pred ccccccceeEEccCcchhhhcch----hhhhhhhhcccchhhhhh--hh-hccCCCcceeeecCCCc--------eEEee
Confidence 357899999998 599999998 999999998877744443 44 67788999999999998 56777
Q ss_pred eCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEE
Q 038533 97 SGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDI 175 (337)
Q Consensus 97 ~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~ 175 (337)
+.| .+++|++... +...+|.+|+ ..|+++.|.. ....+++|+.|.+|++||+....+.+++.. ...+.+|
T Consensus 238 s~d~~~r~Wnvd~~--r~~~TLsGHt-----dkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI 308 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSL--RLRHTLSGHT-----DKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDI 308 (459)
T ss_pred cCCCceeeeeccch--hhhhhhcccc-----cceeeehhhc-cccceeeccccchhhhhhhhhhheeccccc-cccccce
Confidence 777 9999999998 7889999999 9999999986 555599999999999999999887776653 3456666
Q ss_pred EeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEee
Q 038533 176 CWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELE 255 (337)
Q Consensus 176 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 255 (337)
+.+ ...+++|..|++|++||.++.......... +.|+++..++ ++..+.+++.|.. +.+.|+++ ......+.
T Consensus 309 ~~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~-~g~~lLsssRDdt-l~viDlRt-~eI~~~~s 380 (459)
T KOG0288|consen 309 VCS-ISDVISGHFDKKVRFWDIRSADKTRSVPLG----GRVTSLDLSM-DGLELLSSSRDDT-LKVIDLRT-KEIRQTFS 380 (459)
T ss_pred Eec-ceeeeecccccceEEEeccCCceeeEeecC----cceeeEeecc-CCeEEeeecCCCc-eeeeeccc-ccEEEEee
Confidence 665 567899999999999999999866655433 6999999999 9999999999999 99999998 44444443
Q ss_pred cc----cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCc
Q 038533 256 RH----RACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNK 331 (337)
Q Consensus 256 ~~----~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 331 (337)
.. ....+.+.|||++. |+++|+.||.|+||++..+++.. ..........|++++|+|.|..+++++.++.
T Consensus 381 A~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgKlE~-----~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~ 454 (459)
T KOG0288|consen 381 AEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTGKLEK-----VLSLSTSNAAITSLSWNPSGSGLLSADKQKA 454 (459)
T ss_pred ccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCceEEE-----EeccCCCCcceEEEEEcCCCchhhcccCCcc
Confidence 21 22478999999999 99999999999999999444221 1122222336999999999999999999999
Q ss_pred EEEEe
Q 038533 332 MQLLK 336 (337)
Q Consensus 332 i~iw~ 336 (337)
+.+|.
T Consensus 455 v~lW~ 459 (459)
T KOG0288|consen 455 VTLWT 459 (459)
T ss_pred eEecC
Confidence 99994
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.7e-34 Score=243.82 Aligned_cols=242 Identities=17% Similarity=0.255 Sum_probs=215.1
Q ss_pred CCCCCCeEEEecCCCCcccCcCCccEEEEeC--CeEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEe
Q 038533 68 DHPYPPTKLMFDPNSSSRKSSSNRHLLASSG--DFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTC 145 (337)
Q Consensus 68 ~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~--~~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 145 (337)
..+.+|..++|+|..+ .+.++- +.|++||.+-+ .++..|..|. ++|..++|+| .+.++++|
T Consensus 7 skSsRvKglsFHP~rP---------wILtslHsG~IQlWDYRM~--tli~rFdeHd-----GpVRgv~FH~-~qplFVSG 69 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRP---------WILTSLHSGVIQLWDYRMG--TLIDRFDEHD-----GPVRGVDFHP-TQPLFVSG 69 (1202)
T ss_pred cccccccceecCCCCC---------EEEEeecCceeeeehhhhh--hHHhhhhccC-----CccceeeecC-CCCeEEec
Confidence 3457899999999999 877775 39999999998 7889999998 9999999999 99999999
Q ss_pred eCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecC
Q 038533 146 SIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQ 224 (337)
Q Consensus 146 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 224 (337)
+.|-.|+||+..+.+++.++.+|-+.|..+.|+ .-.+++++|.|.+|+||+..+.+++..+. +|+-.|+|..|+|
T Consensus 70 GDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt---GHnHYVMcAqFhp- 145 (1202)
T KOG0292|consen 70 GDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT---GHNHYVMCAQFHP- 145 (1202)
T ss_pred CCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe---cCceEEEeeccCC-
Confidence 999999999999999999999999999999999 67799999999999999999998665543 4778999999999
Q ss_pred CCcEEEEEEecCCEEEEEECCCCC----------------------------CCeEEeecccceeeEEEeCCCCCCeEEE
Q 038533 225 DLRYMATILMDSNKVVILDIRSPT----------------------------LPVAELERHRACVNAIAWAPQSRRHICS 276 (337)
Q Consensus 225 ~~~~l~~~~~d~~~i~i~d~~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 276 (337)
....+++++.|.+ |++||+...+ ...+.+.+|...|+-++|+|.-+ ++++
T Consensus 146 tEDlIVSaSLDQT-VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVS 223 (1202)
T KOG0292|consen 146 TEDLIVSASLDQT-VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVS 223 (1202)
T ss_pred ccceEEEecccce-EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEe
Confidence 9999999999999 9999985211 01235678999999999999999 9999
Q ss_pred EcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 277 VGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 277 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
|+.|..|++|.++..+ ..+.-...+|...|.++-|+|....+++.++|++|+|||+
T Consensus 224 G~DDRqVKlWrmnetK-----aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 224 GADDRQVKLWRMNETK-----AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred cCCcceeeEEEecccc-----ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 9999999999998332 3445688899999999999999989999999999999996
No 61
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-33 Score=207.45 Aligned_cols=290 Identities=16% Similarity=0.169 Sum_probs=228.0
Q ss_pred ceeeeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCc
Q 038533 14 NSVTHESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNR 91 (337)
Q Consensus 14 ~~~~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 91 (337)
|+....|+.|++.+.|+ |++|.+++. |....+|--. +.+.+-. ..+|.+.|.|+...-+.+
T Consensus 3 pi~l~GHERplTqiKyN~eGDLlFscaK----D~~~~vw~s~-nGerlGt----y~GHtGavW~~Did~~s~-------- 65 (327)
T KOG0643|consen 3 PILLQGHERPLTQIKYNREGDLLFSCAK----DSTPTVWYSL-NGERLGT----YDGHTGAVWCCDIDWDSK-------- 65 (327)
T ss_pred ccccccCccccceEEecCCCcEEEEecC----CCCceEEEec-CCceeee----ecCCCceEEEEEecCCcc--------
Confidence 45566789999999999 999999997 9999999543 3333332 279999999999999998
Q ss_pred cEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee-----CCCcEEEEeCC-------
Q 038533 92 HLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS-----IDTTCTIWDIE------- 157 (337)
Q Consensus 92 ~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-----~dg~i~v~d~~------- 157 (337)
.+++|+ | ++++||+.++ +.+..++.. .+|..+.|++ ++++++... ..+.|.++|++
T Consensus 66 -~liTGSAD~t~kLWDv~tG--k~la~~k~~------~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~ 135 (327)
T KOG0643|consen 66 -HLITGSADQTAKLWDVETG--KQLATWKTN------SPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSSDID 135 (327)
T ss_pred -eeeeccccceeEEEEcCCC--cEEEEeecC------CeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChhhhc
Confidence 889988 6 9999999999 677777654 7899999998 888888775 34679999998
Q ss_pred CccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecC
Q 038533 158 KGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDS 236 (337)
Q Consensus 158 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 236 (337)
..++...+..+...++.+-|. -++.+++|..||.|..||.++++....... .|...|+.++++| +..++++++.|.
T Consensus 136 s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~--~h~~~Ind~q~s~-d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 136 SEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE--EHSSKINDLQFSR-DRTYFITGSKDT 212 (327)
T ss_pred ccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh--hhccccccccccC-CcceEEecccCc
Confidence 344566777788999999999 599999999999999999999875444333 4778999999999 999999999999
Q ss_pred CEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCC-cEEEEeCCCCCCCCC-----CCCCceeeeeCCCc
Q 038533 237 NKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDS-QAFIWELPLPPVAGP-----NGIDPMSMYSAGSE 310 (337)
Q Consensus 237 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~ 310 (337)
. -++||.++ -..++++. -..+|++.+++|....+++.|+.+- -|.-=+.+.++++.. ..++.-...+|-++
T Consensus 213 t-akl~D~~t-l~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP 289 (327)
T KOG0643|consen 213 T-AKLVDVRT-LEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP 289 (327)
T ss_pred c-ceeeeccc-eeeEEEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC
Confidence 8 99999998 55667776 3579999999998884455555432 122222222222110 01223367789999
Q ss_pred eeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 311 INQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 311 v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
|++++|+|+|+...++++||.|++..
T Consensus 290 INsvAfhPdGksYsSGGEDG~VR~h~ 315 (327)
T KOG0643|consen 290 INSVAFHPDGKSYSSGGEDGYVRLHH 315 (327)
T ss_pred cceeEECCCCcccccCCCCceEEEEE
Confidence 99999999999999999999999853
No 62
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=239.09 Aligned_cols=243 Identities=18% Similarity=0.260 Sum_probs=203.5
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT 144 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 144 (337)
..+...|.++.|++++. .+++++ + .+++|+....+......+.+|. ..|.+++|+| ++.++++
T Consensus 156 ~~~~~sv~~~~fs~~g~---------~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~-----~~v~~~~fs~-d~~~l~s 220 (456)
T KOG0266|consen 156 GHECPSVTCVDFSPDGR---------ALAAASSDGLIRIWKLEGIKSNLLRELSGHT-----RGVSDVAFSP-DGSYLLS 220 (456)
T ss_pred ccccCceEEEEEcCCCC---------eEEEccCCCcEEEeecccccchhhccccccc-----cceeeeEECC-CCcEEEE
Confidence 34478899999999999 788776 6 9999999666322566667777 9999999999 9999999
Q ss_pred eeCCCcEEEEeC-CCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEee
Q 038533 145 CSIDTTCTIWDI-EKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWN 222 (337)
Q Consensus 145 ~~~dg~i~v~d~-~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~ 222 (337)
++.|++|++||+ ..+..++++++|...|++++|+ .++++++|+.|++|++||+++++....+ ..|...|.+++|+
T Consensus 221 ~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l---~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 221 GSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL---KGHSDGISGLAFS 297 (456)
T ss_pred ecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee---eccCCceEEEEEC
Confidence 999999999999 5557889999999999999999 6899999999999999999997744443 3578899999999
Q ss_pred cCCCcEEEEEEecCCEEEEEECCCCCC-CeEEeecccce--eeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 038533 223 KQDLRYMATILMDSNKVVILDIRSPTL-PVAELERHRAC--VNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGI 299 (337)
Q Consensus 223 ~~~~~~l~~~~~d~~~i~i~d~~~~~~-~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 299 (337)
+ ++.+|++++.|+. |++||+.+... +...+..+... ++.+.|+|++. +++++..|+.+++||+..+.
T Consensus 298 ~-d~~~l~s~s~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~-~ll~~~~d~~~~~w~l~~~~------- 367 (456)
T KOG0266|consen 298 P-DGNLLVSASYDGT-IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK-YLLSASLDRTLKLWDLRSGK------- 367 (456)
T ss_pred C-CCCEEEEcCCCcc-EEEEECCCCceeeeecccCCCCCCceeEEEECCCCc-EEEEecCCCeEEEEEccCCc-------
Confidence 9 9999999999998 99999998432 35566666554 99999999999 99999999999999999322
Q ss_pred CceeeeeCCC---ceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 300 DPMSMYSAGS---EINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 300 ~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
......+|.. .+.+...++.++++++++.|+.|++|++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 368 SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeC
Confidence 2345555655 3445556788999999999999999985
No 63
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=6.6e-33 Score=222.27 Aligned_cols=256 Identities=19% Similarity=0.315 Sum_probs=215.2
Q ss_pred cceeeeeCCCceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCccee------cCCCcCCCCCCCCeEEEecCCCC
Q 038533 13 ENSVTHESPYPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIK------THPSLSFDHPYPPTKLMFDPNSS 83 (337)
Q Consensus 13 ~~~~~~~~~~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~------~~~~~~~~~~~~i~~i~~~~~~~ 83 (337)
+....+.|++.|.-+++- ...+|+++. .+.+.|||+........ .... ..+|.+.=++++|++...
T Consensus 116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~----~~dv~Vfd~tk~~s~~~~~~~~~Pdl~-L~gH~~eg~glsWn~~~~ 190 (422)
T KOG0264|consen 116 EISQKINHDGEVNRARYMPQNPNIVATKTS----SGDVYVFDYTKHPSKPKASGECRPDLR-LKGHEKEGYGLSWNRQQE 190 (422)
T ss_pred EEEEeccCCccchhhhhCCCCCcEEEecCC----CCCEEEEEeccCCCcccccccCCCceE-EEeecccccccccccccc
Confidence 445567889999999998 778888885 99999999876543222 1112 378888888999999877
Q ss_pred cccCcCCccEEEEeC-C-eEEEEecCCCC-----ccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeC
Q 038533 84 SRKSSSNRHLLASSG-D-FLRLWDVGDSS-----IEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDI 156 (337)
Q Consensus 84 ~~~~~~~~~~l~~~~-~-~v~vw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~ 156 (337)
-.|++++ | +|++||+.... ..+...+.+|. ..|..++|++.+.++|++++.|+.+.|||+
T Consensus 191 --------g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~-----~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~ 257 (422)
T KOG0264|consen 191 --------GTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE-----DVVEDVAWHPLHEDLFGSVGDDGKLMIWDT 257 (422)
T ss_pred --------eeEeeccCCCcEEEEeccccccCCccccceEEeecCC-----cceehhhccccchhhheeecCCCeEEEEEc
Confidence 4666666 5 99999998643 34667788888 999999999999999999999999999999
Q ss_pred C--CccchhhhhccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEE
Q 038533 157 E--KGVVETQLIAHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATI 232 (337)
Q Consensus 157 ~--~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 232 (337)
+ +.++.....+|.++|++++|+ ++..||+|+.|++|++||+|+........ ..|+..|.+|.|+|.....|+++
T Consensus 258 R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~--e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 258 RSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTF--EGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred CCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceec--cCCCcceEEEEeCCCCCceeEec
Confidence 9 556677788999999999999 58899999999999999999988644433 45899999999999999999999
Q ss_pred EecCCEEEEEECCCCC-------------CCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 233 LMDSNKVVILDIRSPT-------------LPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 233 ~~d~~~i~i~d~~~~~-------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
+.|+. +.+||+..-+ +++....+|...|..+.|+|..++.+++.+.|+.+.||++.
T Consensus 336 g~D~r-l~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 336 GTDRR-LNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ccCCc-EEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 99999 9999997433 23467789999999999999999999999999999999998
No 64
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.9e-32 Score=241.06 Aligned_cols=291 Identities=21% Similarity=0.354 Sum_probs=231.0
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCc-------ceecCCCcCCCCCCCCeEEEecCCCCcccCcC
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESL-------SIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSS 89 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~-------~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~ 89 (337)
+....|++++.+ +..+|+|+. ..|+.++||+.+.-.. .+.........|.+.|+|+.|+||+.
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq--~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~------ 82 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQ--VLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS------ 82 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCc--cccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC------
Confidence 336779999999 899999982 3399999999763221 11110111257999999999999999
Q ss_pred CccEEEEeCC--eEEEEecCC----------C------CccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcE
Q 038533 90 NRHLLASSGD--FLRLWDVGD----------S------SIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTC 151 (337)
Q Consensus 90 ~~~~l~~~~~--~v~vw~~~~----------~------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 151 (337)
+||+|+| .|.||.... + +.+....+.+|. ..|..++|+| ++.++++++.|++|
T Consensus 83 ---~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~-----~DV~Dv~Wsp-~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 83 ---YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD-----SDVLDVNWSP-DDSLLVSVSLDNSV 153 (942)
T ss_pred ---eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCC-----CccceeccCC-CccEEEEecccceE
Confidence 9999996 899999873 0 145778888998 9999999999 99999999999999
Q ss_pred EEEeCCCccchhhhhccCCceeEEEeCC-CcEEEEEcCCCeEEEEECCCCCCceeeecCC---CCCCCceEEEeecCCCc
Q 038533 152 TIWDIEKGVVETQLIAHDKEVYDICWGE-ARVFASVSADGSVRIFDLRDKEHSTIIYESP---QPDTPLLRLAWNKQDLR 227 (337)
Q Consensus 152 ~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~ 227 (337)
.+||.++.+.+..+.+|.+.|..+.|+| |++|++-+.|++|++|++......+.+.... .....+..+.|+| +|.
T Consensus 154 iiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~ 232 (942)
T KOG0973|consen 154 IIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGH 232 (942)
T ss_pred EEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcC
Confidence 9999999999999999999999999995 9999999999999999987765544443321 2345678999999 999
Q ss_pred EEEEEEecC---CEEEEEECCCCCCCeEEeecccceeeEEEeCCC--------CC---C-----eEEEEcCCCcEEEEeC
Q 038533 228 YMATILMDS---NKVVILDIRSPTLPVAELERHRACVNAIAWAPQ--------SR---R-----HICSVGDDSQAFIWEL 288 (337)
Q Consensus 228 ~l~~~~~d~---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~---~-----~l~~~~~dg~i~iw~~ 288 (337)
+|++...-+ ..+.|.+-.+ -+.-..+-+|..++.+++|+|. |. . .+|+|+.|++|.||..
T Consensus 233 ~las~nA~n~~~~~~~IieR~t-Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 233 HLASPNAVNGGKSTIAIIERGT-WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred eecchhhccCCcceeEEEecCC-ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 999865432 2478887755 4445678899999999999982 11 1 6889999999999999
Q ss_pred CCCCCCCCCCCCcee--eeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 289 PLPPVAGPNGIDPMS--MYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 289 ~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
..+. |+. ..-....|.+++|+|||..|++++.||+|.+++
T Consensus 312 ~~~R--------Pl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 312 ALPR--------PLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred CCCC--------chhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEE
Confidence 7221 332 222467899999999999999999999999875
No 65
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-31 Score=203.72 Aligned_cols=273 Identities=19% Similarity=0.254 Sum_probs=214.7
Q ss_pred eCCCceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 19 ESPYPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 19 ~~~~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
..++.|.+++|| ..++++|+. ||+||+|+++... .... .....|.++|.+++|+.++. .++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SW----D~tVR~wevq~~g-~~~~--ka~~~~~~PvL~v~Wsddgs---------kVf 88 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSW----DGTVRIWEVQNSG-QLVP--KAQQSHDGPVLDVCWSDDGS---------KVF 88 (347)
T ss_pred CcccchheeEeccccCceEEeccc----CCceEEEEEecCC-cccc--hhhhccCCCeEEEEEccCCc---------eEE
Confidence 447889999999 677889998 9999999998753 2222 22368999999999999998 666
Q ss_pred EeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCC--eEEEeeCCCcEEEEeCCCccchhhhhccCCc
Q 038533 96 SSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPK--RIGTCSIDTTCTIWDIEKGVVETQLIAHDKE 171 (337)
Q Consensus 96 ~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 171 (337)
+|+ | .+++||+.++ ....+..|. ++|..+.|-+ ... .|++|+.|++|+.||++...++.++. -.+.
T Consensus 89 ~g~~Dk~~k~wDL~S~---Q~~~v~~Hd-----~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeR 158 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASG---QVSQVAAHD-----APVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPER 158 (347)
T ss_pred eeccCCceEEEEccCC---Ceeeeeecc-----cceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeee-ccce
Confidence 655 7 9999999998 455677787 9999999976 444 89999999999999999988888876 4566
Q ss_pred eeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCC-CC
Q 038533 172 VYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT-LP 250 (337)
Q Consensus 172 v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~-~~ 250 (337)
++++..- ..+++++..++.|.+|+++++......... ..+-.++|++..+ +....+.|+-+|. +.+..+..+. ..
T Consensus 159 vYa~Dv~-~pm~vVata~r~i~vynL~n~~te~k~~~S-pLk~Q~R~va~f~-d~~~~alGsiEGr-v~iq~id~~~~~~ 234 (347)
T KOG0647|consen 159 VYAADVL-YPMAVVATAERHIAVYNLENPPTEFKRIES-PLKWQTRCVACFQ-DKDGFALGSIEGR-VAIQYIDDPNPKD 234 (347)
T ss_pred eeehhcc-CceeEEEecCCcEEEEEcCCCcchhhhhcC-cccceeeEEEEEe-cCCceEeeeecce-EEEEecCCCCccC
Confidence 7777664 457888888999999999877543332222 2345788999888 7777799999998 9888887631 33
Q ss_pred eEEeecccc---------eeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCC
Q 038533 251 VAELERHRA---------CVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQP 321 (337)
Q Consensus 251 ~~~~~~~~~---------~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 321 (337)
-.+++.|+. .|++|+|+|... .|+|++.||++.+||-+... +......|..+|++.+|+.+|.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg-tlvTaGsDGtf~FWDkdar~-------kLk~s~~~~qpItcc~fn~~G~ 306 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHG-TLVTAGSDGTFSFWDKDART-------KLKTSETHPQPITCCSFNRNGS 306 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccc-eEEEecCCceEEEecchhhh-------hhhccCcCCCccceeEecCCCC
Confidence 456777762 688999999888 99999999999999998322 2445567899999999999998
Q ss_pred ceE-EEEcC
Q 038533 322 DWL-AIAFS 329 (337)
Q Consensus 322 ~l~-~~~~d 329 (337)
.++ +.+.|
T Consensus 307 ifaYA~gYD 315 (347)
T KOG0647|consen 307 IFAYALGYD 315 (347)
T ss_pred EEEEEeecc
Confidence 766 44544
No 66
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.9e-32 Score=228.64 Aligned_cols=280 Identities=15% Similarity=0.183 Sum_probs=235.2
Q ss_pred ceeeeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCc
Q 038533 14 NSVTHESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNR 91 (337)
Q Consensus 14 ~~~~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 91 (337)
.+-...|...|.++++| ...+++|+ .+.++||+.+........ . .+.+.+..|.|.++
T Consensus 366 ~i~~~GHR~dVRsl~vS~d~~~~~Sga-----~~SikiWn~~t~kciRTi------~-~~y~l~~~Fvpgd~-------- 425 (888)
T KOG0306|consen 366 NIEIGGHRSDVRSLCVSSDSILLASGA-----GESIKIWNRDTLKCIRTI------T-CGYILASKFVPGDR-------- 425 (888)
T ss_pred eeeeccchhheeEEEeecCceeeeecC-----CCcEEEEEccCcceeEEe------c-cccEEEEEecCCCc--------
Confidence 34445678889999999 45555555 899999988765433322 2 23789999999998
Q ss_pred cEEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCc-----cchh-
Q 038533 92 HLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKG-----VVET- 163 (337)
Q Consensus 92 ~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-----~~~~- 163 (337)
+++.|.+ .+.+||+... ..+.+.+.|. +.|.+++.+| ++..+++|+.|.+|++||..-- ...+
T Consensus 426 -~Iv~G~k~Gel~vfdlaS~--~l~Eti~AHd-----gaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ 496 (888)
T KOG0306|consen 426 -YIVLGTKNGELQVFDLASA--SLVETIRAHD-----GAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKV 496 (888)
T ss_pred -eEEEeccCCceEEEEeehh--hhhhhhhccc-----cceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCccccee
Confidence 9999885 9999999998 6777788888 9999999999 9999999999999999997521 1111
Q ss_pred -hh-----hccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecC
Q 038533 164 -QL-----IAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDS 236 (337)
Q Consensus 164 -~~-----~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 236 (337)
.+ -.-.+.|.|+.++ ++++|+++--|.++++|-+.+.+.- ....+|.-||.|+..+| +++.+++|+.|.
T Consensus 497 lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFf---lsLYGHkLPV~smDIS~-DSklivTgSADK 572 (888)
T KOG0306|consen 497 LSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFF---LSLYGHKLPVLSMDISP-DSKLIVTGSADK 572 (888)
T ss_pred eeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeee---eeecccccceeEEeccC-CcCeEEeccCCC
Confidence 11 1245779999999 7999999999999999999988743 33346889999999999 999999999999
Q ss_pred CEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEE
Q 038533 237 NKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQW 316 (337)
Q Consensus 237 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 316 (337)
+ |++|-+.- +.+-+.+-+|...|.++.|.|+.. ++++++.|+.|+-||-. ++.. ...+.+|...|++++.
T Consensus 573 n-VKiWGLdF-GDCHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~--kFe~-----iq~L~~H~~ev~cLav 642 (888)
T KOG0306|consen 573 N-VKIWGLDF-GDCHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGE--KFEE-----IQKLDGHHSEVWCLAV 642 (888)
T ss_pred c-eEEecccc-chhhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechh--hhhh-----heeeccchheeeeeEE
Confidence 9 99999987 667788889999999999999877 99999999999999998 6443 6688899999999999
Q ss_pred ccCCCceEEEEcCCcEEEEe
Q 038533 317 SPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 317 ~~~~~~l~~~~~d~~i~iw~ 336 (337)
+|+|.++++++.|.+|++|.
T Consensus 643 ~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 643 SPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred cCCCCeEEeccCCceeEeee
Confidence 99999999999999999996
No 67
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.7e-32 Score=211.49 Aligned_cols=251 Identities=20% Similarity=0.341 Sum_probs=213.1
Q ss_pred ceeee-eCCCceeEEEEe-----cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccC
Q 038533 14 NSVTH-ESPYPLYAMAVC-----GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKS 87 (337)
Q Consensus 14 ~~~~~-~~~~~v~~~~~s-----~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 87 (337)
...++ .|.++|.+++|. ...|++++. |.++++|.++........... ..+|...|.++...+++.
T Consensus 136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~----Dqtl~Lw~~~~~~~~~~~~~~-~~GHk~~V~sVsv~~sgt---- 206 (423)
T KOG0313|consen 136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM----DQTLRLWKWNVGENKVKALKV-CRGHKRSVDSVSVDSSGT---- 206 (423)
T ss_pred eEEEEecCCcceeeeEEEecCCccceEEEecC----CceEEEEEecCchhhhhHHhH-hcccccceeEEEecCCCC----
Confidence 33443 568999999998 446999997 999999999987655443111 259999999999999998
Q ss_pred cCCccEEEEeC-C-eEEEEecCCC-----------------------CccceeeecCCCCCcccCCeeEEEeecCCCCeE
Q 038533 88 SSNRHLLASSG-D-FLRLWDVGDS-----------------------SIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRI 142 (337)
Q Consensus 88 ~~~~~~l~~~~-~-~v~vw~~~~~-----------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 142 (337)
.+++|+ | .|+||+.... ...++..+.+|+ .+|.++.|++ ...+
T Consensus 207 -----r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt-----~~Vs~V~w~d--~~v~ 274 (423)
T KOG0313|consen 207 -----RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT-----EPVSSVVWSD--ATVI 274 (423)
T ss_pred -----eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc-----cceeeEEEcC--CCce
Confidence 899988 8 9999993321 124667788898 9999999985 7899
Q ss_pred EEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEe
Q 038533 143 GTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAW 221 (337)
Q Consensus 143 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~ 221 (337)
.+++.|.+|+.||++++..+.++.+ ...++++..+ ..++|++|+.|..|++||.|++.-........+|+..|.++.|
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkw 353 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKW 353 (423)
T ss_pred EeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheec
Confidence 9999999999999999998887774 5678999999 6889999999999999999988655555555578899999999
Q ss_pred ecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 222 NKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 222 ~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
+|.+...|++++.|+. +++||+|+...|+..+.+|...|.++.|...+ ++++|+.|.+|+|+...
T Consensus 354 sp~~~~~~~S~S~D~t-~klWDvRS~k~plydI~~h~DKvl~vdW~~~~--~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 354 SPTNEFQLVSGSYDNT-VKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGG--LIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCCCceEEEEEecCCe-EEEEEeccCCCcceeeccCCceEEEEeccCCc--eEEeccCcceEEEeccc
Confidence 9988899999999999 99999999777999999999999999998654 79999999999999876
No 68
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=100.00 E-value=2.4e-32 Score=221.87 Aligned_cols=289 Identities=17% Similarity=0.220 Sum_probs=240.6
Q ss_pred ccceeeeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcC
Q 038533 12 SENSVTHESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSS 89 (337)
Q Consensus 12 ~~~~~~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~ 89 (337)
-+.+.++.|..-|.++..| .+++.||+ .|.|+|||+............-.......|.++...||++
T Consensus 410 arq~~tL~HGEvVcAvtIS~~trhVyTgG-----kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgr------ 478 (705)
T KOG0639|consen 410 ARQINTLAHGEVVCAVTISNPTRHVYTGG-----KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGR------ 478 (705)
T ss_pred HHhhhhhccCcEEEEEEecCCcceeEecC-----CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCc------
Confidence 3566778888889999999 88999999 8999999998765544332222244667899999999999
Q ss_pred CccEEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhc
Q 038533 90 NRHLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIA 167 (337)
Q Consensus 90 ~~~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 167 (337)
-|.+|+. ++.|||+.....+....+.... ..+.+++.+| +.+..+++..||.|.|||+.+...++.|++
T Consensus 479 ---tLivGGeastlsiWDLAapTprikaeltssa-----paCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqG 549 (705)
T KOG0639|consen 479 ---TLIVGGEASTLSIWDLAAPTPRIKAELTSSA-----PACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQG 549 (705)
T ss_pred ---eEEeccccceeeeeeccCCCcchhhhcCCcc-----hhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccC
Confidence 7777775 9999999988655555555433 5677899999 999999999999999999999999999999
Q ss_pred cCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCC
Q 038533 168 HDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRS 246 (337)
Q Consensus 168 ~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~ 246 (337)
|.+.+.||..+ +|..|.+|+-|.+|+.||+|+++...... ....|.++..+| ++.++++|-.++. +.+.....
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd----F~SQIfSLg~cP-~~dWlavGMens~-vevlh~sk 623 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD----FSSQIFSLGYCP-TGDWLAVGMENSN-VEVLHTSK 623 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh----hhhhheecccCC-CccceeeecccCc-EEEEecCC
Confidence 99999999999 89999999999999999999987544322 347899999999 9999999999988 88887765
Q ss_pred CCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEE
Q 038533 247 PTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAI 326 (337)
Q Consensus 247 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 326 (337)
+ ....+..|..-|.++.|.+.|+ ++++.+.|+-+..|.+.++. .+........|.++..|.+.++++++
T Consensus 624 p--~kyqlhlheScVLSlKFa~cGk-wfvStGkDnlLnawrtPyGa--------siFqskE~SsVlsCDIS~ddkyIVTG 692 (705)
T KOG0639|consen 624 P--EKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYGA--------SIFQSKESSSVLSCDISFDDKYIVTG 692 (705)
T ss_pred c--cceeecccccEEEEEEecccCc-eeeecCchhhhhhccCcccc--------ceeeccccCcceeeeeccCceEEEec
Confidence 3 3456777999999999999999 99999999999999998544 22222356789999999999999999
Q ss_pred EcCCcEEEEeC
Q 038533 327 AFSNKMQLLKV 337 (337)
Q Consensus 327 ~~d~~i~iw~l 337 (337)
+.|....||.|
T Consensus 693 SGdkkATVYeV 703 (705)
T KOG0639|consen 693 SGDKKATVYEV 703 (705)
T ss_pred CCCcceEEEEE
Confidence 99998888864
No 69
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.6e-31 Score=216.60 Aligned_cols=240 Identities=21% Similarity=0.366 Sum_probs=202.3
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT 144 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 144 (337)
.+|..+|.+++|+|++. +|++++ + .+++|++.++ .....+..|. ..+..+.|+| +++.+++
T Consensus 6 ~~h~~~i~~~~~~~~~~---------~l~~~~~~g~i~i~~~~~~--~~~~~~~~~~-----~~i~~~~~~~-~~~~l~~ 68 (289)
T cd00200 6 KGHTGGVTCVAFSPDGK---------LLATGSGDGTIKVWDLETG--ELLRTLKGHT-----GPVRDVAASA-DGTYLAS 68 (289)
T ss_pred cccCCCEEEEEEcCCCC---------EEEEeecCcEEEEEEeeCC--CcEEEEecCC-----cceeEEEECC-CCCEEEE
Confidence 57999999999999988 888887 5 9999999987 4666777777 8889999998 8889999
Q ss_pred eeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeec
Q 038533 145 CSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNK 223 (337)
Q Consensus 145 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 223 (337)
++.+|.|++||+++++.+..+..|...+.++.|+ +++++++++.++.+.+||+++.+....+. .+...+.++.|+|
T Consensus 69 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~i~~~~~~~ 145 (289)
T cd00200 69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR---GHTDWVNSVAFSP 145 (289)
T ss_pred EcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec---cCCCcEEEEEEcC
Confidence 9999999999999888888888898899999999 56788888889999999999766443332 4667899999999
Q ss_pred CCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCcee
Q 038533 224 QDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMS 303 (337)
Q Consensus 224 ~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 303 (337)
++.++++++.++. |++||++. .+++..+..|...+.++.|+|+++ .+++++.|+.|++||++... ....
T Consensus 146 -~~~~l~~~~~~~~-i~i~d~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~-------~~~~ 214 (289)
T cd00200 146 -DGTFVASSSQDGT-IKLWDLRT-GKCVATLTGHTGEVNSVAFSPDGE-KLLSSSSDGTIKLWDLSTGK-------CLGT 214 (289)
T ss_pred -cCCEEEEEcCCCc-EEEEEccc-cccceeEecCccccceEEECCCcC-EEEEecCCCcEEEEECCCCc-------eecc
Confidence 7888888877888 99999987 556778888888999999999998 88888889999999998322 1223
Q ss_pred eeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 304 MYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 304 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
+..|...+.+++|+|++..+++++.|+.+++|++
T Consensus 215 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDL 248 (289)
T ss_pred hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEc
Confidence 4478889999999999766666666999999985
No 70
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.1e-30 Score=199.92 Aligned_cols=268 Identities=18% Similarity=0.214 Sum_probs=211.3
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
...+.|.++.|+ ++.|+++++ ||.+++|+........ ...|..++.+++|.++.. .+..
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssW----DgslrlYdv~~~~l~~------~~~~~~plL~c~F~d~~~---------~~~G 71 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSW----DGSLRLYDVPANSLKL------KFKHGAPLLDCAFADEST---------IVTG 71 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEec----cCcEEEEeccchhhhh------heecCCceeeeeccCCce---------EEEe
Confidence 346789999999 777778888 9999999998774333 368999999999999765 5555
Q ss_pred eCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEE
Q 038533 97 SGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDI 175 (337)
Q Consensus 97 ~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~ 175 (337)
+.| .|+.+|+.++ ....+..|. .+|.|+.+++ ..+.+++|+.|++|++||.+.......+.. ...|.++
T Consensus 72 ~~dg~vr~~Dln~~---~~~~igth~-----~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~ 141 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTG---NEDQIGTHD-----EGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCM 141 (323)
T ss_pred ccCceEEEEEecCC---cceeeccCC-----CceEEEEeec-cCCeEEEcccCccEEEEecccccccccccc-CceEEEE
Confidence 557 9999999998 344566777 9999999998 888999999999999999987555555553 3478887
Q ss_pred EeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCC---CCCeE
Q 038533 176 CWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP---TLPVA 252 (337)
Q Consensus 176 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~---~~~~~ 252 (337)
... ++.|++|+.+..+.+||+|+........+. .-+..+.|+++.| ++.-+++++-+|. |.+=.+... .....
T Consensus 142 ~v~-g~~LvVg~~~r~v~iyDLRn~~~~~q~reS-~lkyqtR~v~~~p-n~eGy~~sSieGR-VavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 142 DVS-GNRLVVGTSDRKVLIYDLRNLDEPFQRRES-SLKYQTRCVALVP-NGEGYVVSSIEGR-VAVEYFDDSEEAQSKKY 217 (323)
T ss_pred ecc-CCEEEEeecCceEEEEEcccccchhhhccc-cceeEEEEEEEec-CCCceEEEeecce-EEEEccCCchHHhhhce
Confidence 775 778999999999999999998765543333 3457899999999 8888888899998 777655442 12344
Q ss_pred Eeecccc---------eeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCce
Q 038533 253 ELERHRA---------CVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDW 323 (337)
Q Consensus 253 ~~~~~~~---------~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 323 (337)
.++.|.. +|++++|+|-.. .|+||+.||.|.+||+. ... ....+..-...|.+++|+.+|..|
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~~~-tfaTgGsDG~V~~Wd~~--~rK-----rl~q~~~~~~SI~slsfs~dG~~L 289 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPIHG-TFATGGSDGIVNIWDLF--NRK-----RLKQLAKYETSISSLSFSMDGSLL 289 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccccc-eEEecCCCceEEEccCc--chh-----hhhhccCCCCceEEEEeccCCCeE
Confidence 5666643 899999999987 89999999999999998 322 233444556779999999999888
Q ss_pred EEEE
Q 038533 324 LAIA 327 (337)
Q Consensus 324 ~~~~ 327 (337)
+.++
T Consensus 290 Aia~ 293 (323)
T KOG1036|consen 290 AIAS 293 (323)
T ss_pred EEEe
Confidence 7665
No 71
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-30 Score=196.39 Aligned_cols=276 Identities=14% Similarity=0.221 Sum_probs=215.8
Q ss_pred CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe
Q 038533 20 SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS 97 (337)
Q Consensus 20 ~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~ 97 (337)
....|.++.|+ |.+|++++. |..++||+.......... ..+...+..++|..... .++.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~----dDsl~LYd~~~g~~~~ti-----~skkyG~~~~~Fth~~~--------~~i~sS 75 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSE----DDSLRLYDSLSGKQVKTI-----NSKKYGVDLACFTHHSN--------TVIHSS 75 (311)
T ss_pred CCCceeEEEecCCCCEEEEecC----CCeEEEEEcCCCceeeEe-----ecccccccEEEEecCCc--------eEEEcc
Confidence 37899999999 999999886 999999988765543332 45667899999977666 355554
Q ss_pred C--C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeE
Q 038533 98 G--D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 98 ~--~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
. | +|+..++.+. +.++.+.||. ..|.+++.+| -++.+++++.|++|++||++..++...+.... -..
T Consensus 76 tk~d~tIryLsl~dN--kylRYF~GH~-----~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi 145 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDN--KYLRYFPGHK-----KRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPI 145 (311)
T ss_pred CCCCCceEEEEeecC--ceEEEcCCCC-----ceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCC--Ccc
Confidence 4 4 9999999999 7999999999 9999999999 67999999999999999999777665554333 345
Q ss_pred EEeC-CCcEEEEEcCCCeEEEEECCCCCC-ceeeecC-CCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCe
Q 038533 175 ICWG-EARVFASVSADGSVRIFDLRDKEH-STIIYES-PQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPV 251 (337)
Q Consensus 175 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~ 251 (337)
++|+ .|-++|++.....|++||+|.-.. +...... .........+.|+| +|++|+.++..+. +++.|.-. +..+
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~-~~~lDAf~-G~~~ 222 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASF-IYLLDAFD-GTVK 222 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCc-EEEEEccC-CcEe
Confidence 7888 577777887777999999997633 2222222 13457889999999 9999999998888 99999988 5667
Q ss_pred EEeeccccee---eEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeee-CCCceeEEEEccCCCceEEEE
Q 038533 252 AELERHRACV---NAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYS-AGSEINQLQWSPAQPDWLAIA 327 (337)
Q Consensus 252 ~~~~~~~~~v---~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 327 (337)
.++..+...- ...+|.|+++ ++++|+.||+|.+|+++ + +.......+ +..++.++.|+|.-. ..++
T Consensus 223 ~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~--t-----g~~v~~~~~~~~~~~~~~~fnP~~~--mf~s 292 (311)
T KOG1446|consen 223 STFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLE--T-----GKKVAVLRGPNGGPVSCVRFNPRYA--MFVS 292 (311)
T ss_pred eeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcC--C-----CcEeeEecCCCCCCccccccCCcee--eeee
Confidence 7777665432 5778999999 99999999999999998 3 223445555 688999999999854 4444
Q ss_pred cCCcEEEE
Q 038533 328 FSNKMQLL 335 (337)
Q Consensus 328 ~d~~i~iw 335 (337)
.+..+.+|
T Consensus 293 a~s~l~fw 300 (311)
T KOG1446|consen 293 ASSNLVFW 300 (311)
T ss_pred cCceEEEE
Confidence 55667666
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.9e-31 Score=228.44 Aligned_cols=272 Identities=16% Similarity=0.232 Sum_probs=230.6
Q ss_pred CCCceeEEEEecceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-
Q 038533 20 SPYPLYAMAVCGQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG- 98 (337)
Q Consensus 20 ~~~~v~~~~~s~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~- 98 (337)
+...+.+..|.++++++++. +.+|++|+.......... ..+|.+.|.++++...+. +|++|+
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~----~~tl~~~~~~~~~~i~~~----l~GH~g~V~~l~~~~~~~---------~lvsgS~ 269 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSD----DSTLHLWDLNNGYLILTR----LVGHFGGVWGLAFPSGGD---------KLVSGST 269 (537)
T ss_pred CcchhhhheeecCeEEecCC----CceeEEeecccceEEEee----ccCCCCCceeEEEecCCC---------EEEEEec
Confidence 36678888998888889987 999999988765544441 279999999999987565 999998
Q ss_pred C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEe
Q 038533 99 D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW 177 (337)
Q Consensus 99 ~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 177 (337)
| ++++||..++ .+...+.+|. ..|.++.. .+..+++|+.|.+|++|+++++..+..+.+|.++|+++..
T Consensus 270 D~t~rvWd~~sg--~C~~~l~gh~-----stv~~~~~---~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~ 339 (537)
T KOG0274|consen 270 DKTERVWDCSTG--ECTHSLQGHT-----SSVRCLTI---DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQL 339 (537)
T ss_pred CCcEEeEecCCC--cEEEEecCCC-----ceEEEEEc---cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEe
Confidence 7 9999999999 7999999998 99999987 4578999999999999999999999999999999999999
Q ss_pred CCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecc
Q 038533 178 GEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERH 257 (337)
Q Consensus 178 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~ 257 (337)
+ +.++++|+.|++|++||.++.+....+ .+|...|+++.+.+ . ..+++|+.|+. |++||+++..+++..+.+|
T Consensus 340 ~-~~~lvsgs~d~~v~VW~~~~~~cl~sl---~gH~~~V~sl~~~~-~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~h 412 (537)
T KOG0274|consen 340 D-EPLLVSGSYDGTVKVWDPRTGKCLKSL---SGHTGRVYSLIVDS-E-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQGH 412 (537)
T ss_pred c-CCEEEEEecCceEEEEEhhhceeeeee---cCCcceEEEEEecC-c-ceEEeeeeccc-eEeecCCchhhhhhhhcCC
Confidence 7 789999999999999999988755554 35889999998854 2 99999999988 9999999943789999999
Q ss_pred cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeee-CCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 258 RACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYS-AGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 258 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
..-+..+.+. ++ +|++++.|+.|++||....+ ....+.+ |...|..+++. .+.+++++.|+.+++|+
T Consensus 413 ~~~v~~l~~~--~~-~Lvs~~aD~~Ik~WD~~~~~-------~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 413 TSLVSSLLLR--DN-FLVSSSADGTIKLWDAEEGE-------CLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred cccccccccc--cc-eeEeccccccEEEeecccCc-------eeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 9888776654 44 89999999999999999322 2334555 66888888887 45788999999999998
Q ss_pred C
Q 038533 337 V 337 (337)
Q Consensus 337 l 337 (337)
+
T Consensus 481 l 481 (537)
T KOG0274|consen 481 L 481 (537)
T ss_pred c
Confidence 6
No 73
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=5e-30 Score=221.87 Aligned_cols=228 Identities=15% Similarity=0.297 Sum_probs=177.7
Q ss_pred CCCCCCCCeEEEecC-CCCcccCcCCccEEEEeC-C-eEEEEecCCCCc-----cceeeecCCCCCcccCCeeEEEeecC
Q 038533 66 SFDHPYPPTKLMFDP-NSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSI-----EPVAVLNNSKSSEFCAPLTSFDWNEI 137 (337)
Q Consensus 66 ~~~~~~~i~~i~~~~-~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~ 137 (337)
..+|.+.|.+++|+| ++. +|++|+ | +|++||+.++.. .++..+.+|. ..|.+++|+|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~---------~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~-----~~V~~l~f~P~ 136 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQ---------KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHT-----KKVGIVSFHPS 136 (493)
T ss_pred EeCCCCCEEEEEEcCCCCC---------EEEEEeCCCEEEEEecCCCccccccCcceEEecCCC-----CcEEEEEeCcC
Confidence 368999999999999 666 888888 5 999999976531 3566788888 99999999994
Q ss_pred CCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCC-C
Q 038533 138 EPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDT-P 215 (337)
Q Consensus 138 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~ 215 (337)
..++|++|+.|+.|++||+++++.+..+.+|...|.+++|+ ++.+|++++.|+.|++||+++++....+. .|.. .
T Consensus 137 ~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~---~H~~~~ 213 (493)
T PTZ00421 137 AMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE---AHASAK 213 (493)
T ss_pred CCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEe---cCCCCc
Confidence 45799999999999999999999888888999999999999 79999999999999999999887544332 2333 3
Q ss_pred ceEEEeecCCCcEEEEEEe----cCCEEEEEECCCCCCCeEEeeccc-ceeeEEEeCCCCCCeEEEEc-CCCcEEEEeCC
Q 038533 216 LLRLAWNKQDLRYMATILM----DSNKVVILDIRSPTLPVAELERHR-ACVNAIAWAPQSRRHICSVG-DDSQAFIWELP 289 (337)
Q Consensus 216 i~~~~~~~~~~~~l~~~~~----d~~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~~ 289 (337)
...+.|.+ ++..+++++. |+. |++||+++...++.....+. ..+....|++++. +|++++ .|+.|++||+.
T Consensus 214 ~~~~~w~~-~~~~ivt~G~s~s~Dr~-VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~-~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 214 SQRCLWAK-RKDLIITLGCSKSQQRQ-IMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN-LLYIGSKGEGNIRCFELM 290 (493)
T ss_pred ceEEEEcC-CCCeEEEEecCCCCCCe-EEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC-EEEEEEeCCCeEEEEEee
Confidence 45678888 6666666553 566 99999998666666554333 3556677899998 777776 59999999999
Q ss_pred CCCCCCCCCCCce-eeeeCCCceeEEEEccCC
Q 038533 290 LPPVAGPNGIDPM-SMYSAGSEINQLQWSPAQ 320 (337)
Q Consensus 290 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~ 320 (337)
.+. ... ....+..++..++|.|.-
T Consensus 291 ~~~-------~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 291 NER-------LTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCc-------eEEEeeccCCCCCcceEecccc
Confidence 322 111 223355677888888853
No 74
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.3e-32 Score=222.13 Aligned_cols=242 Identities=18% Similarity=0.278 Sum_probs=203.0
Q ss_pred CCCCCCCeEEEecC-CCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEE
Q 038533 67 FDHPYPPTKLMFDP-NSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIG 143 (337)
Q Consensus 67 ~~~~~~i~~i~~~~-~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 143 (337)
.+|+..|.++.|.| .+. +|++++ | .|+||++.... .+++++.+|. .+|.+++|+. ++..++
T Consensus 211 ~gH~kgvsai~~fp~~~h---------LlLS~gmD~~vklW~vy~~~-~~lrtf~gH~-----k~Vrd~~~s~-~g~~fL 274 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGH---------LLLSGGMDGLVKLWNVYDDR-RCLRTFKGHR-----KPVRDASFNN-CGTSFL 274 (503)
T ss_pred cCCccccchhhhccceee---------EEEecCCCceEEEEEEecCc-ceehhhhcch-----hhhhhhhccc-cCCeee
Confidence 79999999999999 555 999988 7 99999998843 8999999999 9999999998 999999
Q ss_pred EeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-C-CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEe
Q 038533 144 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-E-ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAW 221 (337)
Q Consensus 144 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~ 221 (337)
+++.|+.|++||+++|+++..+. ....++++.|+ + .+.|++|+.|+.|+.||+|+++..... ..|-+.|..+.|
T Consensus 275 S~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY---d~hLg~i~~i~F 350 (503)
T KOG0282|consen 275 SASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY---DRHLGAILDITF 350 (503)
T ss_pred eeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH---HhhhhheeeeEE
Confidence 99999999999999999988886 35568999999 4 489999999999999999999854433 236689999999
Q ss_pred ecCCCcEEEEEEecCCEEEEEECCCCCCCeEE-eecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCC
Q 038533 222 NKQDLRYMATILMDSNKVVILDIRSPTLPVAE-LERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGID 300 (337)
Q Consensus 222 ~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 300 (337)
-+ ++..+++.+.|+. ++||+.+.+- +++. ...+.....++..+|+++ +++.-+.|+.|.++.+. ...+.+.
T Consensus 351 ~~-~g~rFissSDdks-~riWe~~~~v-~ik~i~~~~~hsmP~~~~~P~~~-~~~aQs~dN~i~ifs~~--~~~r~nk-- 422 (503)
T KOG0282|consen 351 VD-EGRRFISSSDDKS-VRIWENRIPV-PIKNIADPEMHTMPCLTLHPNGK-WFAAQSMDNYIAIFSTV--PPFRLNK-- 422 (503)
T ss_pred cc-CCceEeeeccCcc-EEEEEcCCCc-cchhhcchhhccCcceecCCCCC-eehhhccCceEEEEecc--cccccCH--
Confidence 99 9999999999998 9999998743 3332 333344667899999999 99999999999999987 3222111
Q ss_pred ceeeeeC--CCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 301 PMSMYSA--GSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 301 ~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
...+.+| .+.-..+.|||||++|++|..||.+.+|+
T Consensus 423 kK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 423 KKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred hhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence 2244455 45568899999999999999999999997
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-31 Score=229.67 Aligned_cols=240 Identities=17% Similarity=0.252 Sum_probs=193.7
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCC--------------------------------C---
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGD--------------------------------S--- 109 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~--------------------------------~--- 109 (337)
.+|.++|.++.|++||+ +||+|| | .|+||.+.. .
T Consensus 264 ~ah~gaIw~mKFS~DGK---------yLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 264 NAHKGAIWAMKFSHDGK---------YLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred cccCCcEEEEEeCCCCc---------eeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 38999999999999999 999999 6 999999865 0
Q ss_pred -----------------------CccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh
Q 038533 110 -----------------------SIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI 166 (337)
Q Consensus 110 -----------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 166 (337)
..++++.+.+|. +.|.++.|+. .++|++++.|.+|++|++...+++..|.
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt-----~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~ 407 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHT-----ADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFS 407 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccc-----hhheeccccc--CCeeEeccccccEEeecCCCcceeeEEe
Confidence 013445566676 9999999984 6899999999999999999999999987
Q ss_pred ccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEEC
Q 038533 167 AHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI 244 (337)
Q Consensus 167 ~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~ 244 (337)
|.+.|+||+|+ |+++|++|+-||.|+||++...+...- .. -..-|++++|.| +|++.++|+.+|. +++|+.
T Consensus 408 -HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~D---l~~lITAvcy~P-dGk~avIGt~~G~-C~fY~t 480 (712)
T KOG0283|consen 408 -HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-ND---LRDLITAVCYSP-DGKGAVIGTFNGY-CRFYDT 480 (712)
T ss_pred -cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hh---hhhhheeEEecc-CCceEEEEEeccE-EEEEEc
Confidence 99999999999 699999999999999999988763222 22 237899999999 8999999999999 999999
Q ss_pred CCCCCCeEEee--cc------cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeC--CCceeEE
Q 038533 245 RSPTLPVAELE--RH------RACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSA--GSEINQL 314 (337)
Q Consensus 245 ~~~~~~~~~~~--~~------~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~v~~~ 314 (337)
.. .++..... .| ...|+.+.|.|.....+++.+.|..|||+|.+...+ ...+.++ ...=...
T Consensus 481 ~~-lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~l-------v~KfKG~~n~~SQ~~A 552 (712)
T KOG0283|consen 481 EG-LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDL-------VHKFKGFRNTSSQISA 552 (712)
T ss_pred cC-CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhh-------hhhhcccccCCcceee
Confidence 86 33332221 11 227999999987765688888899999999962231 2233333 2233566
Q ss_pred EEccCCCceEEEEcCCcEEEEeC
Q 038533 315 QWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 315 ~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
.|+.||+++++++.|..|+||++
T Consensus 553 sfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 553 SFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred eEccCCCEEEEeecCceEEEEeC
Confidence 89999999999999999999984
No 76
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-30 Score=220.76 Aligned_cols=287 Identities=16% Similarity=0.225 Sum_probs=237.0
Q ss_pred eeeeeCCCceeEEEEe-----cceEEEeeeeccCcceEEEEEecCCCcc-eec--CC-CcCCCCCCCCeEEEecCCCCcc
Q 038533 15 SVTHESPYPLYAMAVC-----GQRIAVGSFIEDYTNRVDVVSFEPESLS-IKT--HP-SLSFDHPYPPTKLMFDPNSSSR 85 (337)
Q Consensus 15 ~~~~~~~~~v~~~~~s-----~~~la~g~~~~~~d~~i~i~~~~~~~~~-~~~--~~-~~~~~~~~~i~~i~~~~~~~~~ 85 (337)
+.+......+.+++|- .+.|+. .. ++.+..|.++..... ... .. .-..+|...|.++++|.+..
T Consensus 314 ~~~ir~~~kiks~dv~~~~~~~~~lv~-l~----nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~-- 386 (888)
T KOG0306|consen 314 LETIRTSAKIKSFDVTPSGGTENTLVL-LA----NNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI-- 386 (888)
T ss_pred HHheechhheeEEEEEecCCcceeEEE-ee----cCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCce--
Confidence 4445567788888887 334555 43 899999998873222 000 00 11268999999999999998
Q ss_pred cCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhh
Q 038533 86 KSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQ 164 (337)
Q Consensus 86 ~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 164 (337)
++++|++ .+++|+..+. ++++++.. ..+.+..|-| ..+++++|...|.+.+||+.+...+.+
T Consensus 387 -------~~~Sga~~SikiWn~~t~--kciRTi~~-------~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Et 449 (888)
T KOG0306|consen 387 -------LLASGAGESIKIWNRDTL--KCIRTITC-------GYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVET 449 (888)
T ss_pred -------eeeecCCCcEEEEEccCc--ceeEEecc-------ccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhh
Confidence 9999987 9999999998 78888887 7799999999 889999999999999999999999999
Q ss_pred hhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCC-----ceeeec----CCCCCCCceEEEeecCCCcEEEEEEe
Q 038533 165 LIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEH-----STIIYE----SPQPDTPLLRLAWNKQDLRYMATILM 234 (337)
Q Consensus 165 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~----~~~~~~~i~~~~~~~~~~~~l~~~~~ 234 (337)
+++|.+.|.+++.+ ++..+++|+.|.+|++||+.-... .+.+.. .-.-...+.|+.++| ++++|+++=.
T Consensus 450 i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLL 528 (888)
T KOG0306|consen 450 IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLL 528 (888)
T ss_pred hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEec
Confidence 99999999999999 799999999999999999752211 110000 001246899999999 9999999999
Q ss_pred cCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEE
Q 038533 235 DSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQL 314 (337)
Q Consensus 235 d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 314 (337)
|.+ +++|-+.+ -+..-.+-+|.-||.|+..+|+++ +++|||.|.+|+||-++.+. ....+++|.+.|.++
T Consensus 529 dnT-VkVyflDt-lKFflsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGD-------CHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 529 DNT-VKVYFLDT-LKFFLSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGD-------CHKSFFAHDDSVMSV 598 (888)
T ss_pred cCe-EEEEEecc-eeeeeeecccccceeEEeccCCcC-eEEeccCCCceEEeccccch-------hhhhhhcccCceeEE
Confidence 998 99999988 444567889999999999999999 99999999999999999655 344788999999999
Q ss_pred EEccCCCceEEEEcCCcEEEEe
Q 038533 315 QWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 315 ~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
.|.|....+++++-|+.++-||
T Consensus 599 ~F~P~~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 599 QFLPKTHLFFTCGKDGKVKQWD 620 (888)
T ss_pred EEcccceeEEEecCcceEEeec
Confidence 9999988889999999999996
No 77
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-31 Score=196.98 Aligned_cols=252 Identities=20% Similarity=0.287 Sum_probs=204.3
Q ss_pred CCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCc-cceeeecCCCCCcccCCeeEEEe-ecCCCCe
Q 038533 66 SFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSI-EPVAVLNNSKSSEFCAPLTSFDW-NEIEPKR 141 (337)
Q Consensus 66 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~ 141 (337)
...|++.|..+...--++ .||+|+ | +|+|+.++.... .++.+|.+|+ +||..++| +|.-|.+
T Consensus 7 dt~H~D~IHda~lDyygk---------rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~-----GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGK---------RLATCSSDGTVKIFEVRNNGQSKLLAELTGHS-----GPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhhhhHhhhhhhcc---------eeeeecCCccEEEEEEcCCCCceeeeEecCCC-----CCeeEEeecccccCcE
Confidence 468999999888877787 888887 6 999999987653 7889999999 99999999 4556899
Q ss_pred EEEeeCCCcEEEEeCCCcc--chhhhhccCCceeEEEeCC---CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCc
Q 038533 142 IGTCSIDTTCTIWDIEKGV--VETQLIAHDKEVYDICWGE---ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPL 216 (337)
Q Consensus 142 l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i 216 (337)
||+++.||.|.||.-++++ .......|...|++++|.| +-.|++++.||.|.+.+.+....-........|.-.+
T Consensus 73 LAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gv 152 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGV 152 (299)
T ss_pred eeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccccc
Confidence 9999999999999988775 3455668999999999994 6789999999999999998762222222233578899
Q ss_pred eEEEeecCC--C-----------cEEEEEEecCCEEEEEECCCCC-CCeEEeecccceeeEEEeCCCC---CCeEEEEcC
Q 038533 217 LRLAWNKQD--L-----------RYMATILMDSNKVVILDIRSPT-LPVAELERHRACVNAIAWAPQS---RRHICSVGD 279 (337)
Q Consensus 217 ~~~~~~~~~--~-----------~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~---~~~l~~~~~ 279 (337)
++++|.|.. + +.|++|+.|.. |+||+..+.. ....++.+|...|+.++|.|.- +..||+++.
T Consensus 153 nsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 153 NSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred ceeeecCcCCCccccccCcccccceeeccCCccc-eeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 999999841 2 56999999999 9999998743 3334589999999999999964 247999999
Q ss_pred CCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 280 DSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 280 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
||++.||..+ .... ..+...+......+..+.||+.|..|+.++.|+.+.+|+
T Consensus 232 Dg~viIwt~~--~e~e--~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 232 DGTVIIWTKD--EEYE--PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred CCcEEEEEec--CccC--cccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 9999999888 3221 122334555678899999999999888888999999996
No 78
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.4e-30 Score=205.85 Aligned_cols=278 Identities=17% Similarity=0.231 Sum_probs=222.6
Q ss_pred eeeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcc---eec---------CCCcC-CCCCCCCeEEEecC
Q 038533 16 VTHESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLS---IKT---------HPSLS-FDHPYPPTKLMFDP 80 (337)
Q Consensus 16 ~~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~---~~~---------~~~~~-~~~~~~i~~i~~~~ 80 (337)
..-.|.-+|.|++++ +.+.++++. +++|.=|+....... ... ..... ..|...+.+++.++
T Consensus 137 ~~~~H~~s~~~vals~d~~~~fsask----~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 137 VIGKHQLSVTSVALSPDDKRVFSASK----DGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred eeccccCcceEEEeeccccceeecCC----CcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 334678899999999 889999997 999999887644321 000 00111 37889999999999
Q ss_pred CCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCC
Q 038533 81 NSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEK 158 (337)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 158 (337)
|++ +||+|+ | .|.||+.++. +.++.+.+|. +.|.+++|-. ..+.+.+++.|+.|++|+++.
T Consensus 213 Dgk---------ylatgg~d~~v~Iw~~~t~--ehv~~~~ghr-----~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~ 275 (479)
T KOG0299|consen 213 DGK---------YLATGGRDRHVQIWDCDTL--EHVKVFKGHR-----GAVSSLAFRK-GTSELYSASADRSVKVWSIDQ 275 (479)
T ss_pred CCc---------EEEecCCCceEEEecCccc--chhhcccccc-----cceeeeeeec-CccceeeeecCCceEEEehhH
Confidence 999 999998 5 9999999999 7888899999 9999999987 778999999999999999999
Q ss_pred ccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC
Q 038533 159 GVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN 237 (337)
Q Consensus 159 ~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 237 (337)
...+.++.+|.+.|.++... -++.+-+|+.|+++++|++... ...++.. +.+.+-|++|- +...|++|+.+|.
T Consensus 276 ~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee--sqlifrg--~~~sidcv~~I--n~~HfvsGSdnG~ 349 (479)
T KOG0299|consen 276 LSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE--SQLIFRG--GEGSIDCVAFI--NDEHFVSGSDNGS 349 (479)
T ss_pred hHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc--ceeeeeC--CCCCeeeEEEe--cccceeeccCCce
Confidence 99999999999999999888 4666666679999999999433 3444444 56789999997 7889999999999
Q ss_pred EEEEEECCCCCCCeEEee-cc-----------cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeee
Q 038533 238 KVVILDIRSPTLPVAELE-RH-----------RACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMY 305 (337)
Q Consensus 238 ~i~i~d~~~~~~~~~~~~-~~-----------~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 305 (337)
|.+|++.+ .+|+.+.. .| ...|++++..|... ++++|+.+|.|++|.+. ...++ ..++...
T Consensus 350 -IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-L~asGS~~G~vrLW~i~--~g~r~--i~~l~~l 422 (479)
T KOG0299|consen 350 -IALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-LLASGSWSGCVRLWKIE--DGLRA--INLLYSL 422 (479)
T ss_pred -EEEeeecc-cCceeEeeccccccCCccccccccceeeeEecccCc-eEEecCCCCceEEEEec--CCccc--cceeeec
Confidence 99999988 56665542 22 23789999999888 99999999999999999 42221 1233333
Q ss_pred eCCCceeEEEEccCCCceEEEE
Q 038533 306 SAGSEINQLQWSPAQPDWLAIA 327 (337)
Q Consensus 306 ~~~~~v~~~~~~~~~~~l~~~~ 327 (337)
.-.+-|++++|+++|..++++.
T Consensus 423 s~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 423 SLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ccccEEEEEEEccCCCEEEEec
Confidence 4567899999999998777654
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-31 Score=212.47 Aligned_cols=241 Identities=18% Similarity=0.222 Sum_probs=205.4
Q ss_pred CCCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee
Q 038533 68 DHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS 146 (337)
Q Consensus 68 ~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 146 (337)
...+.|.+++|+|..+ +-+|+.+. .+.||+..+. ...+++...+ ..+.+++|-. +|.++++|+
T Consensus 24 ke~~~vssl~fsp~~P--------~d~aVt~S~rvqly~~~~~--~~~k~~srFk-----~~v~s~~fR~-DG~LlaaGD 87 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHP--------YDFAVTSSVRVQLYSSVTR--SVRKTFSRFK-----DVVYSVDFRS-DGRLLAAGD 87 (487)
T ss_pred cccCcceeEecCCCCC--------CceEEecccEEEEEecchh--hhhhhHHhhc-----cceeEEEeec-CCeEEEccC
Confidence 3446799999999887 45666665 9999999887 4555555544 7899999997 999999999
Q ss_pred CCCcEEEEeCCCccchhhhhccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecC
Q 038533 147 IDTTCTIWDIEKGVVETQLIAHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQ 224 (337)
Q Consensus 147 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 224 (337)
..|.|+++|+.+...++.+.+|..++..+.|+ ++..|++|+.|+.+++||+.+... .....+|...|.|.+|+|.
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---~~~l~~htDYVR~g~~~~~ 164 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---QAELSGHTDYVRCGDISPA 164 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE---EEEecCCcceeEeeccccC
Confidence 99999999987777889999999999999999 588899999999999999998873 3444578999999999998
Q ss_pred CCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceee
Q 038533 225 DLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSM 304 (337)
Q Consensus 225 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 304 (337)
++.++++|+.||. |++||+|.....+.++. |..+|..+.+-|.|. ++++++ ...+++||+. +..+ .+...
T Consensus 165 ~~hivvtGsYDg~-vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs-~iasAg-Gn~vkVWDl~--~G~q----ll~~~ 234 (487)
T KOG0310|consen 165 NDHIVVTGSYDGK-VRLWDTRSLTSRVVELN-HGCPVESVLALPSGS-LIASAG-GNSVKVWDLT--TGGQ----LLTSM 234 (487)
T ss_pred CCeEEEecCCCce-EEEEEeccCCceeEEec-CCCceeeEEEcCCCC-EEEEcC-CCeEEEEEec--CCce----ehhhh
Confidence 8889999999999 99999999656666675 889999999999998 888887 5689999999 4222 23344
Q ss_pred eeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 305 YSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 305 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
..|...|+|+++..++..|++++-|+.+++|++
T Consensus 235 ~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 235 FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred hcccceEEEEEeecCCceEeecccccceEEEEc
Confidence 459999999999999999999999999999973
No 80
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-31 Score=225.80 Aligned_cols=248 Identities=18% Similarity=0.374 Sum_probs=201.3
Q ss_pred CCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeec-CCCCCcccCCeeEEEeecCCCCeEEEee
Q 038533 69 HPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLN-NSKSSEFCAPLTSFDWNEIEPKRIGTCS 146 (337)
Q Consensus 69 ~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 146 (337)
-....++|...++.. -++.++. .++||.+..........+. +.+... .-.+..+.|+....++||+++
T Consensus 38 ~k~~~nAIs~nr~~~---------qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~-~~S~~DVkW~~~~~NlIAT~s 107 (839)
T KOG0269|consen 38 LKAKANAISVNRDIN---------QIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNK-FYSAADVKWGQLYSNLIATCS 107 (839)
T ss_pred cccccceEeecCCcc---------eeEEecccceeeEeeCcccCCcceeeecccccce-eeehhhcccccchhhhheeec
Confidence 345577888888887 7777776 8888888765433322222 111111 145667889877889999999
Q ss_pred CCCcEEEEeCCC---ccchhhhhccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEe
Q 038533 147 IDTTCTIWDIEK---GVVETQLIAHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAW 221 (337)
Q Consensus 147 ~dg~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~ 221 (337)
.+|.|.+||+.. .+.+..|..|+..++++.|+ ..++|++|+.||+|++||+|..+....... ....|..|.|
T Consensus 108 ~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~---nSESiRDV~f 184 (839)
T KOG0269|consen 108 TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS---NSESIRDVKF 184 (839)
T ss_pred CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc---cchhhhceee
Confidence 999999999987 56778899999999999999 689999999999999999998886555443 4678999999
Q ss_pred ecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCc
Q 038533 222 NKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDP 301 (337)
Q Consensus 222 ~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 301 (337)
+|..+.+|+++...|. +.+||+|.+.++...+.+|.++|.++.|+|++. +||||+.|+.|+||++..+. ..+
T Consensus 185 sp~~~~~F~s~~dsG~-lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~~------~~~ 256 (839)
T KOG0269|consen 185 SPGYGNKFASIHDSGY-LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDSR------AKP 256 (839)
T ss_pred ccCCCceEEEecCCce-EEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCCC------ccc
Confidence 9988889999888887 999999999999999999999999999999888 99999999999999998433 123
Q ss_pred eeeeeCCCceeEEEEccCCCceEEEE---cCCcEEEEeC
Q 038533 302 MSMYSAGSEINQLQWSPAQPDWLAIA---FSNKMQLLKV 337 (337)
Q Consensus 302 ~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iw~l 337 (337)
........+|..+.|-|..++.++.+ .|-.|+||+|
T Consensus 257 ~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 257 KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred eeEEeecceeeeeeeccCccchhhhhhccccceEEEEee
Confidence 44445678899999999988777654 4889999996
No 81
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1e-30 Score=224.65 Aligned_cols=245 Identities=19% Similarity=0.265 Sum_probs=195.4
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCC----------------------------Cc-----------
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPE----------------------------SL----------- 57 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~----------------------------~~----------- 57 (337)
.|.+.|.++.|| |+|||+|+. |+.|+||.+... ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGe----D~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGE----DGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCC----CceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 578999999999 999999996 999999997650 00
Q ss_pred -----ce----------ecCC-CcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecC
Q 038533 58 -----SI----------KTHP-SLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNN 119 (337)
Q Consensus 58 -----~~----------~~~~-~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~ 119 (337)
.. ..++ ....+|.+.|..|.|+.++ +|.+++ | +|+||++... .+++.|.
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~----------fLLSSSMDKTVRLWh~~~~--~CL~~F~- 407 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN----------FLLSSSMDKTVRLWHPGRK--ECLKVFS- 407 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccCC----------eeEeccccccEEeecCCCc--ceeeEEe-
Confidence 00 0000 0125799999999999887 555555 8 9999999987 7888886
Q ss_pred CCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECC
Q 038533 120 SKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLR 198 (337)
Q Consensus 120 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~ 198 (337)
|. .-|+|++|+|.|.++|++|+-||.|+||++...+.+.-...+ .-|++++|. +|+..+.|+.+|.+++|+.+
T Consensus 408 Hn-----dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 408 HN-----DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred cC-----CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEcc
Confidence 44 899999999999999999999999999999887766555544 679999999 89999999999999999998
Q ss_pred CCCCceeeecC-----CCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccc--eeeEEEeCCCCC
Q 038533 199 DKEHSTIIYES-----PQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRA--CVNAIAWAPQSR 271 (337)
Q Consensus 199 ~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~~~ 271 (337)
..+......-. ......|+.+.|.|.+...+++.+.|.. |+|||.+. ..++..+.++.. .-....|+.+|+
T Consensus 482 ~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~-~~lv~KfKG~~n~~SQ~~Asfs~Dgk 559 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSR-IRIYDGRD-KDLVHKFKGFRNTSSQISASFSSDGK 559 (712)
T ss_pred CCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCc-eEEEeccc-hhhhhhhcccccCCcceeeeEccCCC
Confidence 87643322111 0112379999999977777888888988 99999987 566777776543 335678999999
Q ss_pred CeEEEEcCCCcEEEEeCC
Q 038533 272 RHICSVGDDSQAFIWELP 289 (337)
Q Consensus 272 ~~l~~~~~dg~i~iw~~~ 289 (337)
+|+++++|..|++|++.
T Consensus 560 -~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 560 -HIVSASEDSWVYIWKND 576 (712)
T ss_pred -EEEEeecCceEEEEeCC
Confidence 99999999999999985
No 82
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=2.3e-30 Score=202.31 Aligned_cols=237 Identities=21% Similarity=0.311 Sum_probs=198.8
Q ss_pred eeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 18 HESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 18 ~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
-.|++.|+|+.|+ |.+||+|.. +|.|+||+.......... ..--+.|.=+.|+|.+. +|+
T Consensus 103 tgHKDSVt~~~FshdgtlLATGdm----sG~v~v~~~stg~~~~~~-----~~e~~dieWl~WHp~a~---------ill 164 (399)
T KOG0296|consen 103 TGHKDSVTCCSFSHDGTLLATGDM----SGKVLVFKVSTGGEQWKL-----DQEVEDIEWLKWHPRAH---------ILL 164 (399)
T ss_pred cCCCCceEEEEEccCceEEEecCC----CccEEEEEcccCceEEEe-----ecccCceEEEEeccccc---------EEE
Confidence 3578999999999 999999998 999999999887766664 34456677789999888 888
Q ss_pred EeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhcc-----
Q 038533 96 SSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAH----- 168 (337)
Q Consensus 96 ~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~----- 168 (337)
.|+ | .+-+|.+..+ ...+.+.+|. .++++=.|.| +|+.++++..||+|++||+.+++++..+...
T Consensus 165 AG~~DGsvWmw~ip~~--~~~kv~~Gh~-----~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~ 236 (399)
T KOG0296|consen 165 AGSTDGSVWMWQIPSQ--ALCKVMSGHN-----SPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLEL 236 (399)
T ss_pred eecCCCcEEEEECCCc--ceeeEecCCC-----CCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcC
Confidence 888 5 9999999987 6788899998 9999999999 9999999999999999999998766555410
Q ss_pred ----------------------------------------------CCc---eeEEEeC-CCcEEEEEcCCCeEEEEECC
Q 038533 169 ----------------------------------------------DKE---VYDICWG-EARVFASVSADGSVRIFDLR 198 (337)
Q Consensus 169 ----------------------------------------------~~~---v~~~~~~-~~~~l~~~~~dg~i~iwd~~ 198 (337)
... |.++.++ .-.+.|+|+-||+|.|||+.
T Consensus 237 ~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a 316 (399)
T KOG0296|consen 237 PCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLA 316 (399)
T ss_pred CccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecc
Confidence 000 1122222 23468889999999999999
Q ss_pred CCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEc
Q 038533 199 DKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVG 278 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 278 (337)
..+.+... .|..+|..+.|-+ ..+|++++.+|. |+.||.|+ ++++.++.+|...|.+++++|+.+ +++|+|
T Consensus 317 ~~~~R~~c----~he~~V~~l~w~~--t~~l~t~c~~g~-v~~wDaRt-G~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s 387 (399)
T KOG0296|consen 317 ASTLRHIC----EHEDGVTKLKWLN--TDYLLTACANGK-VRQWDART-GQLKFTYTGHQMGILDFALSPQKR-LVVTVS 387 (399)
T ss_pred cchhheec----cCCCceEEEEEcC--cchheeeccCce-EEeeeccc-cceEEEEecCchheeEEEEcCCCc-EEEEec
Confidence 88754443 3668899999975 688999999999 99999999 888999999999999999999999 999999
Q ss_pred CCCcEEEEeCC
Q 038533 279 DDSQAFIWELP 289 (337)
Q Consensus 279 ~dg~i~iw~~~ 289 (337)
.|++.+||+..
T Consensus 388 ~D~~a~VF~v~ 398 (399)
T KOG0296|consen 388 DDNTALVFEVP 398 (399)
T ss_pred CCCeEEEEecC
Confidence 99999999875
No 83
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=7.2e-31 Score=223.16 Aligned_cols=285 Identities=19% Similarity=0.368 Sum_probs=223.7
Q ss_pred CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCc--CCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 20 SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSL--SFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 20 ~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
.+....+|+.+ -..|++++ ...+.||.++............ .......+..++|..... ++||
T Consensus 38 ~k~~~nAIs~nr~~~qiv~AG-----rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~--------NlIA 104 (839)
T KOG0269|consen 38 LKAKANAISVNRDINQIVVAG-----RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYS--------NLIA 104 (839)
T ss_pred cccccceEeecCCcceeEEec-----ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchh--------hhhe
Confidence 35567777777 56777777 6888998887655433321111 011223466788986555 6999
Q ss_pred EeCC--eEEEEecCCC-CccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCce
Q 038533 96 SSGD--FLRLWDVGDS-SIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEV 172 (337)
Q Consensus 96 ~~~~--~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v 172 (337)
+++. .|.+||+... +.+.+..|..|+ ..+.+++|++..+++|++|+.||.|++||++..+...++.+....|
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~-----Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESi 179 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHE-----RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESI 179 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhc-----cceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhh
Confidence 9984 9999999872 125667888888 9999999999999999999999999999999999888888888999
Q ss_pred eEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCC-C
Q 038533 173 YDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT-L 249 (337)
Q Consensus 173 ~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~-~ 249 (337)
.+|+|+ +++.|+++...|.+++||+|........+. .|.+++.|+.|+| ++.+||+||.|+. |+|||+.... .
T Consensus 180 RDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~--AH~GpV~c~nwhP-nr~~lATGGRDK~-vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 180 RDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLT--AHNGPVLCLNWHP-NREWLATGGRDKM-VKIWDMTDSRAK 255 (839)
T ss_pred hceeeccCCCceEEEecCCceEEEeeccCchhHHHHhh--cccCceEEEeecC-CCceeeecCCCcc-EEEEeccCCCcc
Confidence 999999 689999999999999999999875444443 4899999999999 9999999999998 9999998533 3
Q ss_pred CeEEeecccceeeEEEeCCCCCCeEEEEc--CCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCC-ceEEE
Q 038533 250 PVAELERHRACVNAIAWAPQSRRHICSVG--DDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQP-DWLAI 326 (337)
Q Consensus 250 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 326 (337)
++.++. ...+|.+++|-|..++.|++++ .|-.|+|||++.+- .....+..|...++.++|....+ .+.++
T Consensus 256 ~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY------IP~~t~~eH~~~vt~i~W~~~d~~~l~s~ 328 (839)
T KOG0269|consen 256 PKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY------IPYATFLEHTDSVTGIAWDSGDRINLWSC 328 (839)
T ss_pred ceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc------ccceeeeccCccccceeccCCCceeeEee
Confidence 444444 3568999999999998888887 47789999999332 11236667999999999987433 45577
Q ss_pred EcCCcEE
Q 038533 327 AFSNKMQ 333 (337)
Q Consensus 327 ~~d~~i~ 333 (337)
+-||.+.
T Consensus 329 sKD~tv~ 335 (839)
T KOG0269|consen 329 SKDGTVL 335 (839)
T ss_pred cCccHHH
Confidence 7888763
No 84
>PTZ00420 coronin; Provisional
Probab=99.98 E-value=2.1e-29 Score=219.13 Aligned_cols=262 Identities=18% Similarity=0.254 Sum_probs=188.4
Q ss_pred EEEecceEEEeee--eccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCC-CCcccCcCCccEEEEeC-C-eE
Q 038533 27 MAVCGQRIAVGSF--IEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPN-SSSRKSSSNRHLLASSG-D-FL 101 (337)
Q Consensus 27 ~~~s~~~la~g~~--~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~-~~~~~~~~~~~~l~~~~-~-~v 101 (337)
++.+++++|..-. .++.++.+++|+......... ..+|.++|.+++|+|+ +. +||+|+ | +|
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~-----L~gH~~~V~~lafsP~~~~---------lLASgS~DgtI 99 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIK-----LKGHTSSILDLQFNPCFSE---------ILASGSEDLTI 99 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEE-----EcCCCCCEEEEEEcCCCCC---------EEEEEeCCCeE
Confidence 3333556655221 122378899988765432222 2789999999999997 45 899888 5 99
Q ss_pred EEEecCCCCc------cceeeecCCCCCcccCCeeEEEeecCCCC-eEEEeeCCCcEEEEeCCCccchhhhhccCCceeE
Q 038533 102 RLWDVGDSSI------EPVAVLNNSKSSEFCAPLTSFDWNEIEPK-RIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 102 ~vw~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
+|||+.++.. .+...+.+|. ..|.+++|+| ++. ++++++.|+.|++||+++++.+..+. |...|.+
T Consensus 100 rIWDi~t~~~~~~~i~~p~~~L~gH~-----~~V~sVaf~P-~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~S 172 (568)
T PTZ00420 100 RVWEIPHNDESVKEIKDPQCILKGHK-----KKISIIDWNP-MNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSS 172 (568)
T ss_pred EEEECCCCCccccccccceEEeecCC-----CcEEEEEECC-CCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEE
Confidence 9999986421 2345677887 8999999999 655 56799999999999999988766665 5678999
Q ss_pred EEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceE-----EEeecCCCcEEEEEEecC---CEEEEEECC
Q 038533 175 ICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLR-----LAWNKQDLRYMATILMDS---NKVVILDIR 245 (337)
Q Consensus 175 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~~l~~~~~d~---~~i~i~d~~ 245 (337)
++|+ ++.+|++++.|+.|++||+++++....+. .|.+.+.+ ..|++ ++.+|++++.++ .+|+|||++
T Consensus 173 lswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~---gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr 248 (568)
T PTZ00420 173 LKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFH---IHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLK 248 (568)
T ss_pred EEECCCCCEEEEEecCCEEEEEECCCCcEEEEEe---cccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECC
Confidence 9999 79999999999999999999987554432 34444332 33456 788899888775 249999999
Q ss_pred CCCCCeEEeecc--cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCC
Q 038533 246 SPTLPVAELERH--RACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQ 320 (337)
Q Consensus 246 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 320 (337)
....++..+..+ .+.+......+++. ++++|+.|+.|++|++..+.. ..+..+.+..++..++|.|..
T Consensus 249 ~~~~pl~~~~ld~~~~~L~p~~D~~tg~-l~lsGkGD~tIr~~e~~~~~~------~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 249 NTTSALVTMSIDNASAPLIPHYDESTGL-IYLIGKGDGNCRYYQHSLGSI------RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred CCCCceEEEEecCCccceEEeeeCCCCC-EEEEEECCCeEEEEEccCCcE------EeecccccCCCccceEEcccc
Confidence 766777665432 23333333445566 899999999999999983221 112233467788999999975
No 85
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.8e-30 Score=216.16 Aligned_cols=237 Identities=19% Similarity=0.283 Sum_probs=203.2
Q ss_pred CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC
Q 038533 21 PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG 98 (337)
Q Consensus 21 ~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~ 98 (337)
.+.|+++.|+ |++||+|.. +|.|.|||.......-.. ...|...|-+++|. .. .+.+|+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~----~g~v~iwD~~~~k~~~~~----~~~h~~rvg~laW~--~~---------~lssGs 277 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTS----DGTVQIWDVKEQKKTRTL----RGSHASRVGSLAWN--SS---------VLSSGS 277 (484)
T ss_pred CCceEEEEECCCCCEEEEeec----CCeEEEEehhhccccccc----cCCcCceeEEEecc--Cc---------eEEEec
Confidence 7889999999 999999997 999999998766554443 23399999999998 43 777777
Q ss_pred -C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEE
Q 038533 99 -D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDIC 176 (337)
Q Consensus 99 -~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~ 176 (337)
+ .|..+|++..+. ....+.+|. ..|..+.|++ ++.++|+|+.|+.+.|||....+++..+..|...|.+++
T Consensus 278 r~~~I~~~dvR~~~~-~~~~~~~H~-----qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~a 350 (484)
T KOG0305|consen 278 RDGKILNHDVRISQH-VVSTLQGHR-----QEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALA 350 (484)
T ss_pred CCCcEEEEEEecchh-hhhhhhccc-----ceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEee
Confidence 4 999999998853 223588888 9999999999 999999999999999999988888999999999999999
Q ss_pred eCC--CcEEEEEc--CCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeE
Q 038533 177 WGE--ARVFASVS--ADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVA 252 (337)
Q Consensus 177 ~~~--~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 252 (337)
|+| ..+||+|+ .|+.|++||..++.....+... ..|..+.|++....++.+.+.....|.||+..+ ..++.
T Consensus 351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps-~~~~~ 425 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPS-MKLVA 425 (484)
T ss_pred eCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-cceee
Confidence 994 78999875 5999999999998876666544 899999999955555555554444599999998 56788
Q ss_pred EeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 253 ELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 253 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
.+.+|...|..++++|+|. .+++|+.|.++++|++-
T Consensus 426 ~l~gH~~RVl~la~SPdg~-~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 426 ELLGHTSRVLYLALSPDGE-TIVTGAADETLRFWNLF 461 (484)
T ss_pred eecCCcceeEEEEECCCCC-EEEEecccCcEEecccc
Confidence 9999999999999999999 99999999999999998
No 86
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.1e-30 Score=197.89 Aligned_cols=283 Identities=19% Similarity=0.277 Sum_probs=233.5
Q ss_pred CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe
Q 038533 20 SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS 97 (337)
Q Consensus 20 ~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~ 97 (337)
|.+.|..++-. ...+.+++. |.+.+||.++........ .+|.+.|++|+|++.+. +++++
T Consensus 147 HkDGiW~Vaa~~tqpi~gtASA----DhTA~iWs~Esg~CL~~Y-----~GH~GSVNsikfh~s~~---------L~lTa 208 (481)
T KOG0300|consen 147 HKDGIWHVAADSTQPICGTASA----DHTARIWSLESGACLATY-----TGHTGSVNSIKFHNSGL---------LLLTA 208 (481)
T ss_pred cccceeeehhhcCCcceeeccc----ccceeEEeeccccceeee-----cccccceeeEEeccccc---------eEEEc
Confidence 56778888877 668888887 999999999887766665 89999999999999998 88888
Q ss_pred C-C-eEEEEe------cCCC--------C------------------------ccceeeecCCCCCcccCCeeEEEeecC
Q 038533 98 G-D-FLRLWD------VGDS--------S------------------------IEPVAVLNNSKSSEFCAPLTSFDWNEI 137 (337)
Q Consensus 98 ~-~-~v~vw~------~~~~--------~------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~~ 137 (337)
+ | +-.||. +... + ..++..+.+|. +.|.+..|-.
T Consensus 209 SGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~-----~vV~a~dWL~- 282 (481)
T KOG0300|consen 209 SGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHR-----AVVSACDWLA- 282 (481)
T ss_pred cCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccc-----cceEehhhhc-
Confidence 7 4 888998 2210 0 13456677777 8999999987
Q ss_pred CCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCc
Q 038533 138 EPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPL 216 (337)
Q Consensus 138 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i 216 (337)
.++.+++++.|.+..+||+++++.+..+.+|....+.++-+ ..+++++.+.|.+.++||++..-.....+ .+|...+
T Consensus 283 gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VF--QGHtdtV 360 (481)
T KOG0300|consen 283 GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVF--QGHTDTV 360 (481)
T ss_pred CcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeee--cccccce
Confidence 89999999999999999999999999999999999999988 57788899999999999999544333333 4588999
Q ss_pred eEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCC
Q 038533 217 LRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGP 296 (337)
Q Consensus 217 ~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 296 (337)
+++.|. .+..+++|+.|.. |++||+++...++.++.. ..+++.++.+..++ +++.--.+..|++||++...+.
T Consensus 361 TS~vF~--~dd~vVSgSDDrT-vKvWdLrNMRsplATIRt-dS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~Rla-- 433 (481)
T KOG0300|consen 361 TSVVFN--TDDRVVSGSDDRT-VKVWDLRNMRSPLATIRT-DSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGNRLA-- 433 (481)
T ss_pred eEEEEe--cCCceeecCCCce-EEEeeeccccCcceeeec-CCccceeEeecCCc-eEEeccCCceEEEEecCCCccc--
Confidence 999998 5678889998888 999999999999999974 67899999999888 8888888899999999822221
Q ss_pred CCCCce-eeeeCCCceeEEEEccCC--CceEEEEcCCcEEEEeC
Q 038533 297 NGIDPM-SMYSAGSEINQLQWSPAQ--PDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 297 ~~~~~~-~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iw~l 337 (337)
..|. .-.+|..-|.+++|..+- ..|++++.|..+.-|++
T Consensus 434 --RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 434 --RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred --cCCcccccccceeeeeeeccccCcccccccccccceeeeeEe
Confidence 1222 445788889999998653 35899999999999985
No 87
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.3e-29 Score=201.39 Aligned_cols=290 Identities=21% Similarity=0.342 Sum_probs=219.7
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCC
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGD 108 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~ 108 (337)
.++|++|-. +.....+.+|-++.....+.....+ -......|++|...+. ..+..++++|.|. + .|.|||+.-
T Consensus 137 DnlIl~ar~-eddvs~LEvYVyn~~e~nlYvHHD~--ilpafPLC~ewld~~~--~~~~~gNyvAiGtmdp~IeIWDLDI 211 (463)
T KOG0270|consen 137 DNLILCARN-EDDVSYLEVYVYNEEEENLYVHHDF--ILPAFPLCIEWLDHGS--KSGGAGNYVAIGTMDPEIEIWDLDI 211 (463)
T ss_pred CcEEEEeec-cCCceEEEEEEEcCCCcceeEecce--eccCcchhhhhhhcCC--CCCCCcceEEEeccCceeEEecccc
Confidence 455555543 5556788888888766554431111 1234457888865522 3345567999998 6 999999863
Q ss_pred CC-ccceeee-------------cCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeE
Q 038533 109 SS-IEPVAVL-------------NNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 109 ~~-~~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
.. ..+..+| +.+....|...|..++|+....+.||+|+.|.+|++||+.++++..++..|...|.+
T Consensus 212 ~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~ 291 (463)
T KOG0270|consen 212 VDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQT 291 (463)
T ss_pred ccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeE
Confidence 21 0111111 222223344889999999877889999999999999999999999999999999999
Q ss_pred EEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeE
Q 038533 175 ICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVA 252 (337)
Q Consensus 175 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 252 (337)
+.|+ .+..|++|+.|+++.+.|.|........... .+.|-.++|.|.....++++..||. |+-+|+|++++++.
T Consensus 292 l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~-v~~~D~R~~~~~vw 367 (463)
T KOG0270|consen 292 LEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDDGT-VYYFDIRNPGKPVW 367 (463)
T ss_pred EEecCCCceEEEeccccceEEeeeccCccccCceEEe---ccceEEEEecCCCceeEEEecCCce-EEeeecCCCCCcee
Confidence 9999 5889999999999999999965443333333 4789999999988888888888888 99999999999999
Q ss_pred EeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCC---CceeEEEEccCCCceEE-EEc
Q 038533 253 ELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAG---SEINQLQWSPAQPDWLA-IAF 328 (337)
Q Consensus 253 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~-~~~ 328 (337)
++..|..+|.++++++.-+.+++|++.|+.+++|++.... +.....|. +...++++.|+-..+++ ++.
T Consensus 368 t~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~--------~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~ 439 (463)
T KOG0270|consen 368 TLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS--------PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGE 439 (463)
T ss_pred EEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC--------CcccccccccccceeecccCCCcceEEEecCc
Confidence 9999999999999999988899999999999999998322 22222222 23677888888776665 456
Q ss_pred CCcEEEEeC
Q 038533 329 SNKMQLLKV 337 (337)
Q Consensus 329 d~~i~iw~l 337 (337)
.+.++||++
T Consensus 440 k~~~~vwd~ 448 (463)
T KOG0270|consen 440 KAVLRVWDI 448 (463)
T ss_pred cceEEEeec
Confidence 678999985
No 88
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=7.7e-29 Score=214.51 Aligned_cols=240 Identities=20% Similarity=0.283 Sum_probs=180.9
Q ss_pred CCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCc-----------cceeeecCCCCCcccCCeeEEEeecCC
Q 038533 71 YPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSI-----------EPVAVLNNSKSSEFCAPLTSFDWNEIE 138 (337)
Q Consensus 71 ~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~~~~~ 138 (337)
..|.....++++. +++++..+ ....|+...+.. .....+.+|. +.|++++|+|.+
T Consensus 21 ~~i~~~~~~~d~~--------~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~-----~~V~~v~fsP~d 87 (493)
T PTZ00421 21 LNVTPSTALWDCS--------NTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQE-----GPIIDVAFNPFD 87 (493)
T ss_pred eccccccccCCCC--------CcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCC-----CCEEEEEEcCCC
Confidence 3455556666755 24444445 556776544310 0112466777 999999999877
Q ss_pred CCeEEEeeCCCcEEEEeCCCcc-------chhhhhccCCceeEEEeCC--CcEEEEEcCCCeEEEEECCCCCCceeeecC
Q 038533 139 PKRIGTCSIDTTCTIWDIEKGV-------VETQLIAHDKEVYDICWGE--ARVFASVSADGSVRIFDLRDKEHSTIIYES 209 (337)
Q Consensus 139 ~~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~v~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 209 (337)
+++|++|+.|++|++||+.++. ++..+.+|...|.+++|+| +++|++++.|++|++||+++++....+
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l--- 164 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI--- 164 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE---
Confidence 8899999999999999997652 4566788999999999994 479999999999999999987643332
Q ss_pred CCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccce-eeEEEeCCCCCCeEEEEc----CCCcEE
Q 038533 210 PQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRAC-VNAIAWAPQSRRHICSVG----DDSQAF 284 (337)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~----~dg~i~ 284 (337)
..|...|.+++|+| ++.+|++++.|+. |++||+++ +..+..+.+|... +..+.|.+++. .+++++ .|+.|+
T Consensus 165 ~~h~~~V~sla~sp-dG~lLatgs~Dg~-IrIwD~rs-g~~v~tl~~H~~~~~~~~~w~~~~~-~ivt~G~s~s~Dr~Vk 240 (493)
T PTZ00421 165 KCHSDQITSLEWNL-DGSLLCTTSKDKK-LNIIDPRD-GTIVSSVEAHASAKSQRCLWAKRKD-LIITLGCSKSQQRQIM 240 (493)
T ss_pred cCCCCceEEEEEEC-CCCEEEEecCCCE-EEEEECCC-CcEEEEEecCCCCcceEEEEcCCCC-eEEEEecCCCCCCeEE
Confidence 24678899999999 9999999999998 99999998 5567788888764 45678999887 565543 479999
Q ss_pred EEeCCCCCCCCCCCCCceeee--eCCCceeEEEEccCCCceEEEE-cCCcEEEEeC
Q 038533 285 IWELPLPPVAGPNGIDPMSMY--SAGSEINQLQWSPAQPDWLAIA-FSNKMQLLKV 337 (337)
Q Consensus 285 iw~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~l 337 (337)
+||++ +... +.... .+...+....|++++..|++++ .|+.|++|++
T Consensus 241 lWDlr--~~~~-----p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 241 LWDTR--KMAS-----PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred EEeCC--CCCC-----ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 99998 4332 22222 2334566778999998888877 5999999985
No 89
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=7.8e-30 Score=202.44 Aligned_cols=242 Identities=14% Similarity=0.240 Sum_probs=198.3
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.|..+|..+.|| .++|++++. +..+.+||.+........ ..+|...+.+++|.||+. .+++
T Consensus 267 gh~~~V~yi~wSPDdryLlaCg~----~e~~~lwDv~tgd~~~~y----~~~~~~S~~sc~W~pDg~---------~~V~ 329 (519)
T KOG0293|consen 267 GHSQPVSYIMWSPDDRYLLACGF----DEVLSLWDVDTGDLRHLY----PSGLGFSVSSCAWCPDGF---------RFVT 329 (519)
T ss_pred cccCceEEEEECCCCCeEEecCc----hHheeeccCCcchhhhhc----ccCcCCCcceeEEccCCc---------eeEe
Confidence 468899999999 788888887 888999988876544433 244668899999999999 7888
Q ss_pred eC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeE
Q 038533 97 SG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 97 ~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
|+ | ++..||++... ....++-+ ...|.+++..+ +++++++...|..|++++.++...+..+. ...+|++
T Consensus 330 Gs~dr~i~~wdlDgn~---~~~W~gvr----~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its 400 (519)
T KOG0293|consen 330 GSPDRTIIMWDLDGNI---LGNWEGVR----DPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITS 400 (519)
T ss_pred cCCCCcEEEecCCcch---hhcccccc----cceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhcccc-ccCceeE
Confidence 87 6 99999998863 23333321 14699999998 99999999999999999998776655554 4567999
Q ss_pred EEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEE
Q 038533 175 ICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAE 253 (337)
Q Consensus 175 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 253 (337)
+..+ +++++++--.+..+++||+...+.+.. +.+.....-+..-+|...+..++++|++|+. |+||+.++ +.++..
T Consensus 401 ~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~k-Y~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~s-gkll~~ 477 (519)
T KOG0293|consen 401 FSISKDGKLALVNLQDQEIHLWDLEENKLVRK-YFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRIS-GKLLAV 477 (519)
T ss_pred EEEcCCCcEEEEEcccCeeEEeecchhhHHHH-hhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccC-CceeEe
Confidence 9999 899999999999999999996654333 3333334456666787767789999999998 99999998 789999
Q ss_pred eecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 254 LERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 254 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
+.+|...|++++|+|..+.++|+++.||+|+||...
T Consensus 478 LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 478 LSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 999999999999999999899999999999999887
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=4.5e-29 Score=199.25 Aligned_cols=277 Identities=16% Similarity=0.249 Sum_probs=225.3
Q ss_pred ceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C
Q 038533 23 PLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D 99 (337)
Q Consensus 23 ~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~ 99 (337)
.+.++... ...+++|+. |..+.++|.+.+..... ..+|...|+.+.|+|+.. .+++++ |
T Consensus 221 gi~ald~~~s~~~ilTGG~----d~~av~~d~~s~q~l~~-----~~Gh~kki~~v~~~~~~~---------~v~~aSad 282 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGE----DKTAVLFDKPSNQILAT-----LKGHTKKITSVKFHKDLD---------TVITASAD 282 (506)
T ss_pred CeeEEeecCCCCcceecCC----CCceEEEecchhhhhhh-----ccCcceEEEEEEeccchh---------heeecCCc
Confidence 47777777 489999996 98999977665443322 389999999999999998 777777 6
Q ss_pred -eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhc--cCCceeEEE
Q 038533 100 -FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIA--HDKEVYDIC 176 (337)
Q Consensus 100 -~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~v~~~~ 176 (337)
.|+||..... ........|. .+|+.+..+| ++.+|++++.||+..+.|++++..+..... ..-.+++.+
T Consensus 283 ~~i~vws~~~~--s~~~~~~~h~-----~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 283 EIIRVWSVPLS--SEPTSSRPHE-----EPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred ceEEeeccccc--cCcccccccc-----ccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 9999999887 4566677777 9999999999 999999999999999999999987765543 234589999
Q ss_pred eC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEee
Q 038533 177 WG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELE 255 (337)
Q Consensus 177 ~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 255 (337)
|+ ||.+|.+|..||.+++||+.++.. ....++|.++|..++|+. +|.+|++++.|+. |++||+|... ..+++.
T Consensus 355 fHpDgLifgtgt~d~~vkiwdlks~~~---~a~Fpght~~vk~i~FsE-NGY~Lat~add~~-V~lwDLRKl~-n~kt~~ 428 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDGVVKIWDLKSQTN---VAKFPGHTGPVKAISFSE-NGYWLATAADDGS-VKLWDLRKLK-NFKTIQ 428 (506)
T ss_pred EcCCceEEeccCCCceEEEEEcCCccc---cccCCCCCCceeEEEecc-CceEEEEEecCCe-EEEEEehhhc-ccceee
Confidence 99 799999999999999999998873 334456899999999998 9999999999999 9999999844 455554
Q ss_pred c-ccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEE
Q 038533 256 R-HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQL 334 (337)
Q Consensus 256 ~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 334 (337)
- ...++.++.|.+.|. +|+.++.|=+|++++-.... ......+..|.+..+.+.|....+++++++.|..+++
T Consensus 429 l~~~~~v~s~~fD~SGt-~L~~~g~~l~Vy~~~k~~k~-----W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGT-YLGIAGSDLQVYICKKKTKS-----WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRL 502 (506)
T ss_pred ccccccceeEEEcCCCC-eEEeecceeEEEEEeccccc-----ceeeehhhhcccccceeeecccceEEeeccchhheEE
Confidence 3 234799999999999 89998878777776654222 2224466678888999999999999999999999998
Q ss_pred EeC
Q 038533 335 LKV 337 (337)
Q Consensus 335 w~l 337 (337)
+.+
T Consensus 503 ~a~ 505 (506)
T KOG0289|consen 503 YAL 505 (506)
T ss_pred eec
Confidence 753
No 91
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-28 Score=187.67 Aligned_cols=238 Identities=18% Similarity=0.173 Sum_probs=194.0
Q ss_pred CCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEe
Q 038533 68 DHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTC 145 (337)
Q Consensus 68 ~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 145 (337)
.....|+++.|+++|. ++++++ | +++|||..++ +.++++..++ -.+..+.|-. ..+.++.+
T Consensus 12 ~~~~~i~sl~fs~~G~---------~litss~dDsl~LYd~~~g--~~~~ti~skk-----yG~~~~~Fth-~~~~~i~s 74 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGL---------LLITSSEDDSLRLYDSLSG--KQVKTINSKK-----YGVDLACFTH-HSNTVIHS 74 (311)
T ss_pred cCCCceeEEEecCCCC---------EEEEecCCCeEEEEEcCCC--ceeeEeeccc-----ccccEEEEec-CCceEEEc
Confidence 4578899999999998 777665 5 9999999999 6777887766 6777888876 55666666
Q ss_pred eC--CCcEEEEeCCCccchhhhhccCCceeEEEeCC-CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEee
Q 038533 146 SI--DTTCTIWDIEKGVVETQLIAHDKEVYDICWGE-ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWN 222 (337)
Q Consensus 146 ~~--dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~ 222 (337)
+. |.+|+..++.+.+.++.+.+|...|++++.+| ++.+++++.|++|++||+|..++...+.. ..-..++|+
T Consensus 75 Stk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~-----~~~pi~AfD 149 (311)
T KOG1446|consen 75 STKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL-----SGRPIAAFD 149 (311)
T ss_pred cCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-----CCCcceeEC
Confidence 65 88999999999999999999999999999994 78999999999999999998887666543 344568899
Q ss_pred cCCCcEEEEEEecCCEEEEEECCCC-CCCeEEeecc---cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCC
Q 038533 223 KQDLRYMATILMDSNKVVILDIRSP-TLPVAELERH---RACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNG 298 (337)
Q Consensus 223 ~~~~~~l~~~~~d~~~i~i~d~~~~-~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 298 (337)
| .|-++|++...+. |++||+|.. +.|..++... ....+.+.|+|+|+ +|+.++..+.+.+.|.-.++.
T Consensus 150 p-~GLifA~~~~~~~-IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~G~~----- 221 (311)
T KOG1446|consen 150 P-EGLIFALANGSEL-IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFDGTV----- 221 (311)
T ss_pred C-CCcEEEEecCCCe-EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccCCcE-----
Confidence 9 9999999988876 999999976 3566665433 56789999999999 888888899999999985442
Q ss_pred CCceeeeeCCC---ceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 299 IDPMSMYSAGS---EINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 299 ~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
...+..+.. --.+..|.||++++++++.||+|.+|++
T Consensus 222 --~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 222 --KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred --eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 222222222 2267899999999999999999999985
No 92
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=189.11 Aligned_cols=264 Identities=14% Similarity=0.213 Sum_probs=208.4
Q ss_pred eEEEeeeeccCcceEEEEEecCCCc------ceecCCCc-CCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEE
Q 038533 33 RIAVGSFIEDYTNRVDVVSFEPESL------SIKTHPSL-SFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRL 103 (337)
Q Consensus 33 ~la~g~~~~~~d~~i~i~~~~~~~~------~~~~~~~~-~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~v 103 (337)
.|++|+. ...|.-++++.... .+...+.+ ...|.++|++++.+ ++ ++|+|+ | +|+|
T Consensus 3 ~iIvGtY----E~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~---------~~aSGssDetI~I 67 (362)
T KOG0294|consen 3 EIIVGTY----EHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GP---------YVASGSSDETIHI 67 (362)
T ss_pred eEEEeee----eeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ce---------eEeccCCCCcEEE
Confidence 4778885 88888888776551 11111111 25799999999975 66 999988 5 9999
Q ss_pred EecCCCCccceeeecCCCCCcccCCeeEEEeecCCC--CeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CC
Q 038533 104 WDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEP--KRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EA 180 (337)
Q Consensus 104 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~ 180 (337)
||++.. .....+..|. +.|+++.|.+ .. +.|++|+.||.|.+|+......+..+++|.+.|+.++.+ .+
T Consensus 68 YDm~k~--~qlg~ll~Ha-----gsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~ 139 (362)
T KOG0294|consen 68 YDMRKR--KQLGILLSHA-----GSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG 139 (362)
T ss_pred Eeccch--hhhcceeccc-----cceEEEEecC-CcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC
Confidence 999998 6777888888 9999999987 44 389999999999999999999999999999999999999 58
Q ss_pred cEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccce
Q 038533 181 RVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRAC 260 (337)
Q Consensus 181 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~ 260 (337)
++.++.+.|+.+++||+-.++........ .....+.|+| .|.+++.+..++ |-+|.+.+ ......+. ....
T Consensus 140 KLALsVg~D~~lr~WNLV~Gr~a~v~~L~----~~at~v~w~~-~Gd~F~v~~~~~--i~i~q~d~-A~v~~~i~-~~~r 210 (362)
T KOG0294|consen 140 KLALSVGGDQVLRTWNLVRGRVAFVLNLK----NKATLVSWSP-QGDHFVVSGRNK--IDIYQLDN-ASVFREIE-NPKR 210 (362)
T ss_pred ceEEEEcCCceeeeehhhcCccceeeccC----CcceeeEEcC-CCCEEEEEeccE--EEEEeccc-HhHhhhhh-cccc
Confidence 88889999999999999988754443222 3344599999 999998888776 99999887 33333332 2345
Q ss_pred eeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEE--ccCCCceEEEEcCCcEEEEeC
Q 038533 261 VNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQW--SPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 261 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~iw~l 337 (337)
+.++.|...+ .|++|+.|+.|.+||.+ . ...+..+.+|..+|.++.+ .|++.+|+++++||.|+||++
T Consensus 211 ~l~~~~l~~~--~L~vG~d~~~i~~~D~d--s-----~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 211 ILCATFLDGS--ELLVGGDNEWISLKDTD--S-----DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred ceeeeecCCc--eEEEecCCceEEEeccC--C-----CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 7777776554 79999999999999999 3 1235577899999999984 466778999999999999986
No 93
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.1e-29 Score=190.28 Aligned_cols=267 Identities=18% Similarity=0.259 Sum_probs=208.2
Q ss_pred cceeeee-CCCceeEEEEecceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCc
Q 038533 13 ENSVTHE-SPYPLYAMAVCGQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNR 91 (337)
Q Consensus 13 ~~~~~~~-~~~~v~~~~~s~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 91 (337)
.+++.++ |.++|+++|.++.++|+|+. |.+|+|||+......-.. ..|.+.|+++.|.+... .
T Consensus 34 ~~lF~~~aH~~sitavAVs~~~~aSGss----DetI~IYDm~k~~qlg~l-----l~HagsitaL~F~~~~S-------~ 97 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVSGPYVASGSS----DETIHIYDMRKRKQLGIL-----LSHAGSITALKFYPPLS-------K 97 (362)
T ss_pred eccccccccccceeEEEecceeEeccCC----CCcEEEEeccchhhhcce-----eccccceEEEEecCCcc-------h
Confidence 3466664 58999999999999999998 999999999865543332 68999999999998763 0
Q ss_pred cEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccC
Q 038533 92 HLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHD 169 (337)
Q Consensus 92 ~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 169 (337)
..|.+|+ | .|.+|+...- +++..++.|. +.|+.++.+| .+++.++.+.|+.+++||+-.|+.-..+.- .
T Consensus 98 shLlS~sdDG~i~iw~~~~W--~~~~slK~H~-----~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~ 168 (362)
T KOG0294|consen 98 SHLLSGSDDGHIIIWRVGSW--ELLKSLKAHK-----GQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNL-K 168 (362)
T ss_pred hheeeecCCCcEEEEEcCCe--EEeeeecccc-----cccceeEecC-CCceEEEEcCCceeeeehhhcCccceeecc-C
Confidence 2455555 5 9999999887 8999999999 8999999999 999999999999999999999885444331 2
Q ss_pred CceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCC
Q 038533 170 KEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT 248 (337)
Q Consensus 170 ~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~ 248 (337)
...+.+.|+ .|.+|+.+..+ .|-+|.+.+......+.. ...+.|+.|. ++..|++|+.++. |.+||... .
T Consensus 169 ~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~----~~r~l~~~~l--~~~~L~vG~d~~~-i~~~D~ds-~ 239 (362)
T KOG0294|consen 169 NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN----PKRILCATFL--DGSELLVGGDNEW-ISLKDTDS-D 239 (362)
T ss_pred CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc----cccceeeeec--CCceEEEecCCce-EEEeccCC-C
Confidence 223449999 68888888875 588999988765444322 2567788775 7899999999998 99999988 7
Q ss_pred CCeEEeecccceeeEEEe--CCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEc
Q 038533 249 LPVAELERHRACVNAIAW--APQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWS 317 (337)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 317 (337)
.+...+.+|...|..+.+ .|++. +|+|++.||.|+|||++..+...| .++.......+++|+...
T Consensus 240 ~~~~~~~AH~~RVK~i~~~~~~~~~-~lvTaSSDG~I~vWd~~~~~k~~~---~~l~e~n~~~RltCl~~~ 306 (362)
T KOG0294|consen 240 TPLTEFLAHENRVKDIASYTNPEHE-YLVTASSDGFIKVWDIDMETKKRP---TLLAELNTNVRLTCLRVK 306 (362)
T ss_pred ccceeeecchhheeeeEEEecCCce-EEEEeccCceEEEEEccccccCCc---ceeEEeecCCccceeeeh
Confidence 788999999999999984 35666 999999999999999995432221 123333345666666643
No 94
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.8e-29 Score=199.65 Aligned_cols=287 Identities=13% Similarity=0.181 Sum_probs=228.6
Q ss_pred CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC
Q 038533 21 PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG 98 (337)
Q Consensus 21 ~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~ 98 (337)
.++|+++.|+ ...|++|+. |+.++||.++.+...... .+ .-...+|.+.+|.|+|. ..+++++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~----d~~lrifqvDGk~N~~lq--S~-~l~~fPi~~a~f~p~G~--------~~i~~s~ 277 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGL----DGTLRIFQVDGKVNPKLQ--SI-HLEKFPIQKAEFAPNGH--------SVIFTSG 277 (514)
T ss_pred cCCceEEEecCCCceEEEecC----CCcEEEEEecCccChhhe--ee-eeccCccceeeecCCCc--------eEEEecc
Confidence 4789999999 788899997 999999999988777554 22 33467899999999998 5777777
Q ss_pred C--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEE
Q 038533 99 D--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDIC 176 (337)
Q Consensus 99 ~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~ 176 (337)
. .+..||+.+.+...+..+.++. ...+..+..++ ++++|+..+..|.|.+....+++.+..++ ..+.|.+++
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e----~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~ 351 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVE----EKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFT 351 (514)
T ss_pred cceEEEEeeccccccccccCCCCcc----cchhheeEecC-CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEE
Confidence 4 9999999998776776666654 14567788888 99999999999999999999999988887 578899999
Q ss_pred eC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCC-----CCCC
Q 038533 177 WG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRS-----PTLP 250 (337)
Q Consensus 177 ~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~-----~~~~ 250 (337)
|+ +++.|++++.+|.|.+||++...+....... ..-.-++++.++ ++.+||+|+..|. |.|||..+ ..+|
T Consensus 352 fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~--G~v~gts~~~S~-ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 352 FSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD--GSVHGTSLCISL-NGSYLATGSDSGI-VNIYDGNSCFASTNPKP 427 (514)
T ss_pred EecCCcEEEEEcCCceEEEEecCCcceEEEEeec--CccceeeeeecC-CCceEEeccCcce-EEEeccchhhccCCCCc
Confidence 99 8999999999999999999999766555433 122345677777 8999999999998 99999653 2367
Q ss_pred eEEeecccceeeEEEeCCCCCCeEEEEcC--CCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEc
Q 038533 251 VAELERHRACVNAIAWAPQSRRHICSVGD--DSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAF 328 (337)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 328 (337)
+..+..-...|+++.|+|+.+ +||.+|. +..+++-.+..-+.-. ..|. ....-+.|++++|+|.+.+++.+..
T Consensus 428 ik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~TVFs---NfP~-~n~~vg~vtc~aFSP~sG~lAvGNe 502 (514)
T KOG2055|consen 428 IKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSCTVFS---NFPT-SNTKVGHVTCMAFSPNSGYLAVGNE 502 (514)
T ss_pred hhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccceeeec---cCCC-CCCcccceEEEEecCCCceEEeecC
Confidence 777766677999999999999 9888874 5679988887222111 0011 1223456999999999888888899
Q ss_pred CCcEEEEeC
Q 038533 329 SNKMQLLKV 337 (337)
Q Consensus 329 d~~i~iw~l 337 (337)
+|++.+|+|
T Consensus 503 ~grv~l~kL 511 (514)
T KOG2055|consen 503 AGRVHLFKL 511 (514)
T ss_pred CCceeeEee
Confidence 999999986
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.4e-29 Score=188.39 Aligned_cols=238 Identities=17% Similarity=0.281 Sum_probs=202.4
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT 144 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 144 (337)
.+|...|.+++|+.+|. .||+|+ | ++.+|++...+........+|. +.|-.++|+|..++++++
T Consensus 17 ~~~~~~v~Sv~wn~~g~---------~lasgs~dktv~v~n~e~~r~~~~~~~~gh~-----~svdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGT---------KLASGSFDKTVSVWNLERDRFRKELVYRGHT-----DSVDQLCWDPKHPDLFAT 82 (313)
T ss_pred hhhhhcceEEEEcccCc---------eeeecccCCceEEEEecchhhhhhhcccCCC-----cchhhheeCCCCCcceEE
Confidence 57889999999999999 999998 6 9999999988555555667777 889999999989999999
Q ss_pred eeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeec
Q 038533 145 CSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNK 223 (337)
Q Consensus 145 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 223 (337)
++.|.+|++||++.+++...+....+.+ -+.|+ ++++++.++.|..|.+.|.++.+...... ....+.-++|+-
T Consensus 83 as~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~----~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ----FKFEVNEISWNN 157 (313)
T ss_pred ecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc----ccceeeeeeecC
Confidence 9999999999999999888776544444 56777 89999999999999999999887443322 345678889985
Q ss_pred CCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCcee
Q 038533 224 QDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMS 303 (337)
Q Consensus 224 ~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 303 (337)
++++++.....|. |.|..... -+|+..++.|.....||.|+|+|+ +||+|+.|-.+.+||++ ++.. ...
T Consensus 158 -~nd~Fflt~GlG~-v~ILsyps-Lkpv~si~AH~snCicI~f~p~Gr-yfA~GsADAlvSLWD~~--ELiC-----~R~ 226 (313)
T KOG1407|consen 158 -SNDLFFLTNGLGC-VEILSYPS-LKPVQSIKAHPSNCICIEFDPDGR-YFATGSADALVSLWDVD--ELIC-----ERC 226 (313)
T ss_pred -CCCEEEEecCCce-EEEEeccc-cccccccccCCcceEEEEECCCCc-eEeeccccceeeccChh--Hhhh-----hee
Confidence 7777777777787 99998886 678999999999999999999999 99999999999999999 5332 346
Q ss_pred eeeCCCceeEEEEccCCCceEEEEcCCcEEE
Q 038533 304 MYSAGSEINQLQWSPAQPDWLAIAFSNKMQL 334 (337)
Q Consensus 304 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 334 (337)
+..+.-+|..+.||-+|++|+++++|..|-|
T Consensus 227 isRldwpVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 227 ISRLDWPVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred eccccCceEEEEeccCcceeeccCccceEEe
Confidence 6678999999999999999999999977654
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.6e-30 Score=212.50 Aligned_cols=277 Identities=16% Similarity=0.235 Sum_probs=228.3
Q ss_pred EEEEe---cceEEEeeeeccCcceEEEEEecCCCcceecC--CCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C
Q 038533 26 AMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTH--PSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D 99 (337)
Q Consensus 26 ~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~ 99 (337)
++..+ +++|.+|+. ||.|++|+........... ..+ ..|.+-|+.+....+++ -|++++ |
T Consensus 29 ~Lq~da~~~ryLfTgGR----Dg~i~~W~~~~d~~~~s~~~~asm-e~HsDWVNDiiL~~~~~---------tlIS~SsD 94 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGR----DGIIRLWSVTQDSNEPSTPYIASM-EHHSDWVNDIILCGNGK---------TLISASSD 94 (735)
T ss_pred hccccCCCCceEEecCC----CceEEEeccccccCCcccchhhhh-hhhHhHHhhHHhhcCCC---------ceEEecCC
Confidence 44444 778999997 9999999998766542221 122 67899999999999997 666665 7
Q ss_pred -eEEEEecCCCCccceeeecCCCCCcccCCeeEEEe-ecCCCCeEEEeeCCCcEEEEeCCCcc--chhh--------hh-
Q 038533 100 -FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDW-NEIEPKRIGTCSIDTTCTIWDIEKGV--VETQ--------LI- 166 (337)
Q Consensus 100 -~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~--------~~- 166 (337)
+|++|+...+..-+..++..|+ ..|.|+++ -+ +..++|+|+.|+.|.+||++++. .+.. +.
T Consensus 95 tTVK~W~~~~~~~~c~stir~H~-----DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 95 TTVKVWNAHKDNTFCMSTIRTHK-----DYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred ceEEEeecccCcchhHhhhhccc-----chheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 9999999887556788899998 99999999 55 88999999999999999999873 2222 22
Q ss_pred ccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECC
Q 038533 167 AHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR 245 (337)
Q Consensus 167 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~ 245 (337)
++...|++++.+ .+..+++|+..+.|++||.++.+....+. +|...|.++..++ +|..+++++.|+. |++||+.
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLr---GHTdNVr~ll~~d-DGt~~ls~sSDgt-IrlWdLg 243 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR---GHTDNVRVLLVND-DGTRLLSASSDGT-IRLWDLG 243 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccceeeee---ccccceEEEEEcC-CCCeEeecCCCce-EEeeecc
Confidence 678889999999 68899999999999999999998655554 5889999999998 9999999999999 9999999
Q ss_pred CCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEE
Q 038533 246 SPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLA 325 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 325 (337)
. .+++.++..|...|+++..+|+-. .+++|+.||.|..=|++.+. ....+.....+|..+..+.+...+-+
T Consensus 244 q-QrCl~T~~vH~e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n~~-------~~tlick~daPv~~l~~~~~~~~~Wv 314 (735)
T KOG0308|consen 244 Q-QRCLATYIVHKEGVWALQSSPSFT-HVYSGGRDGNIYRTDLRNPA-------KSTLICKEDAPVLKLHLHEHDNSVWV 314 (735)
T ss_pred c-cceeeeEEeccCceEEEeeCCCcc-eEEecCCCCcEEecccCCch-------hheEeecCCCchhhhhhccccCCcee
Confidence 8 678999999999999999999998 99999999999999998321 24455556777888888766555667
Q ss_pred EEcCCcEEEEe
Q 038533 326 IAFSNKMQLLK 336 (337)
Q Consensus 326 ~~~d~~i~iw~ 336 (337)
+..|+.|+-|.
T Consensus 315 tTtds~I~rW~ 325 (735)
T KOG0308|consen 315 TTTDSSIKRWK 325 (735)
T ss_pred eeccccceecC
Confidence 77888888885
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=7.7e-29 Score=189.32 Aligned_cols=240 Identities=15% Similarity=0.288 Sum_probs=188.6
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCC-CccceeeecCCCCCcccCCeeEEEeecCCCCeEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDS-SIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIG 143 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 143 (337)
..-++.|.+|+|||... .++++++ | +||+|+++.. .... +....|. ++|.+++|+. ++..++
T Consensus 24 ~pP~DsIS~l~FSP~~~--------~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~-----~PvL~v~Wsd-dgskVf 88 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQAD--------NLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHD-----GPVLDVCWSD-DGSKVF 88 (347)
T ss_pred CCcccchheeEeccccC--------ceEEecccCCceEEEEEecCCcccc-hhhhccC-----CCeEEEEEcc-CCceEE
Confidence 45678899999999655 3665666 7 9999999874 3323 4445566 9999999998 999999
Q ss_pred EeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CC--cEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEE
Q 038533 144 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EA--RVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLA 220 (337)
Q Consensus 144 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~ 220 (337)
+|+.|+.+++||+.+++ +..+..|.++|..+.|- .. ..|++|+.|.+|++||+|.......+.. .+.++++.
T Consensus 89 ~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L----PeRvYa~D 163 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL----PERVYAAD 163 (347)
T ss_pred eeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec----cceeeehh
Confidence 99999999999999995 55667899999999999 33 4899999999999999998876555543 36777776
Q ss_pred eecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeec-ccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 038533 221 WNKQDLRYMATILMDSNKVVILDIRSPTLPVAELER-HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGI 299 (337)
Q Consensus 221 ~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 299 (337)
. ...+++++..+.. |.+|+++++....+.... -.-.+++++..++.. ..+.|+-+|++.|..++.+.. .
T Consensus 164 v---~~pm~vVata~r~-i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~-~~alGsiEGrv~iq~id~~~~-----~ 233 (347)
T KOG0647|consen 164 V---LYPMAVVATAERH-IAVYNLENPPTEFKRIESPLKWQTRCVACFQDKD-GFALGSIEGRVAIQYIDDPNP-----K 233 (347)
T ss_pred c---cCceeEEEecCCc-EEEEEcCCCcchhhhhcCcccceeeEEEEEecCC-ceEeeeecceEEEEecCCCCc-----c
Confidence 5 4567888888888 999999875433333221 234789999999988 779999999999999995432 1
Q ss_pred CceeeeeCC---------CceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 300 DPMSMYSAG---------SEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 300 ~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
.-+.+.-|+ -.|++++|+|.-..|++++.||+..+||
T Consensus 234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEec
Confidence 234444454 2588999999887899999999999997
No 98
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2.6e-28 Score=212.24 Aligned_cols=216 Identities=18% Similarity=0.228 Sum_probs=167.0
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc--------chhhhhccCCc
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV--------VETQLIAHDKE 171 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--------~~~~~~~~~~~ 171 (337)
.|++|+.... ..+..+.+|. ++|.+++|+|.++++|++|+.||.|++||+.++. ++..+.+|...
T Consensus 55 vI~L~~~~r~--~~v~~L~gH~-----~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 55 AIRLENQMRK--PPVIKLKGHT-----SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred EEEeeecCCC--ceEEEEcCCC-----CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 8899998765 5778889998 9999999999558899999999999999997642 23356789999
Q ss_pred eeEEEeCC-Cc-EEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCC
Q 038533 172 VYDICWGE-AR-VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTL 249 (337)
Q Consensus 172 v~~~~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~ 249 (337)
|.+++|+| +. ++++++.|++|++||+++++....+. +...|.+++|+| ++.+|++++.|+. |++||+++ +.
T Consensus 128 V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~----~~~~V~Slswsp-dG~lLat~s~D~~-IrIwD~Rs-g~ 200 (568)
T PTZ00420 128 ISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN----MPKKLSSLKWNI-KGNLLSGTCVGKH-MHIIDPRK-QE 200 (568)
T ss_pred EEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe----cCCcEEEEEECC-CCCEEEEEecCCE-EEEEECCC-Cc
Confidence 99999994 54 56799999999999999887543332 346899999999 9999999999988 99999998 56
Q ss_pred CeEEeecccceeeE-----EEeCCCCCCeEEEEcCCC----cEEEEeCCCCCCCCCCCCCceeeeeCC---CceeEEEEc
Q 038533 250 PVAELERHRACVNA-----IAWAPQSRRHICSVGDDS----QAFIWELPLPPVAGPNGIDPMSMYSAG---SEINQLQWS 317 (337)
Q Consensus 250 ~~~~~~~~~~~v~~-----~~~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~ 317 (337)
.+..+.+|.+.+.. ..|++++. +|++++.|+ .|+|||++ .... +.....+. ..+.-.-..
T Consensus 201 ~i~tl~gH~g~~~s~~v~~~~fs~d~~-~IlTtG~d~~~~R~VkLWDlr--~~~~-----pl~~~~ld~~~~~L~p~~D~ 272 (568)
T PTZ00420 201 IASSFHIHDGGKNTKNIWIDGLGGDDN-YILSTGFSKNNMREMKLWDLK--NTTS-----ALVTMSIDNASAPLIPHYDE 272 (568)
T ss_pred EEEEEecccCCceeEEEEeeeEcCCCC-EEEEEEcCCCCccEEEEEECC--CCCC-----ceEEEEecCCccceEEeeeC
Confidence 67888889875433 34568888 788877664 79999999 4332 33333332 223333334
Q ss_pred cCCCceEEEEcCCcEEEEeC
Q 038533 318 PAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 318 ~~~~~l~~~~~d~~i~iw~l 337 (337)
+++..+++++.|+.|++|++
T Consensus 273 ~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 273 STGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred CCCCEEEEEECCCeEEEEEc
Confidence 55777778889999999985
No 99
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=2.9e-30 Score=192.25 Aligned_cols=242 Identities=16% Similarity=0.215 Sum_probs=200.5
Q ss_pred eeeee-CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCc
Q 038533 15 SVTHE-SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNR 91 (337)
Q Consensus 15 ~~~~~-~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 91 (337)
+-+|. |.+.|.+...+ ..+-|+++. |-+-+||+--...+... +.|..-|.+++|+.|..
T Consensus 52 igtfeghkgavw~~~l~~na~~aasaaa----dftakvw~a~tgdelhs------f~hkhivk~~af~~ds~-------- 113 (334)
T KOG0278|consen 52 IGTFEGHKGAVWSATLNKNATRAASAAA----DFTAKVWDAVTGDELHS------FEHKHIVKAVAFSQDSN-------- 113 (334)
T ss_pred EEeeeccCcceeeeecCchhhhhhhhcc----cchhhhhhhhhhhhhhh------hhhhheeeeEEecccch--------
Confidence 34454 58889998888 556677776 88999987665443332 68999999999999998
Q ss_pred cEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccC
Q 038533 92 HLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHD 169 (337)
Q Consensus 92 ~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 169 (337)
.|.+|+ + .+||||++..+ .+...+.+|. +.|..+.|.. ..+.|+++..|++||+||.++++.++++. ..
T Consensus 114 -~lltgg~ekllrvfdln~p~-App~E~~ght-----g~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~ 184 (334)
T KOG0278|consen 114 -YLLTGGQEKLLRVFDLNRPK-APPKEISGHT-----GGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE-FN 184 (334)
T ss_pred -hhhccchHHHhhhhhccCCC-CCchhhcCCC-----CcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe-cC
Confidence 888888 4 99999999886 5677888998 9999999987 77889998999999999999999988887 56
Q ss_pred CceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCC
Q 038533 170 KEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTL 249 (337)
Q Consensus 170 ~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~ 249 (337)
.+|+++.+++...+++-...+.|.+||..+....+... ....|.+..++| +...+++|+.|.. ++.||..+ +.
T Consensus 185 s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k----~P~nV~SASL~P-~k~~fVaGged~~-~~kfDy~T-ge 257 (334)
T KOG0278|consen 185 SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK----MPCNVESASLHP-KKEFFVAGGEDFK-VYKFDYNT-GE 257 (334)
T ss_pred CCCcceeeccCCCEEEEecCceeEEeccccccceeecc----CccccccccccC-CCceEEecCcceE-EEEEeccC-Cc
Confidence 78999999943445555567889999999887555543 247889999999 7799999999998 99999999 44
Q ss_pred CeEEe-ecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCC
Q 038533 250 PVAEL-ERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLP 291 (337)
Q Consensus 250 ~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 291 (337)
.+..+ .+|.++|.|+.|+|+|. +.++|+.||+|++|.+..+
T Consensus 258 Ei~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 258 EIGSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred eeeecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCC
Confidence 45554 88999999999999999 9999999999999999843
No 100
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.8e-30 Score=204.87 Aligned_cols=242 Identities=19% Similarity=0.251 Sum_probs=203.0
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT 144 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 144 (337)
..|.+.++.+.|-++.. .|++|+ | .|++|++...+.....++.+.. ++|+.++|.+ ++..+++
T Consensus 172 d~h~gev~~v~~l~~sd---------tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~-----g~it~~d~d~-~~~~~iA 236 (459)
T KOG0288|consen 172 DAHEGEVHDVEFLRNSD---------TLATGGSDRIIKLWNVLGEKSELISTLAGSL-----GNITSIDFDS-DNKHVIA 236 (459)
T ss_pred hccccccceeEEccCcc---------hhhhcchhhhhhhhhcccchhhhhhhhhccC-----CCcceeeecC-CCceEEe
Confidence 67999999999999977 888887 6 9999999988767888888877 8999999998 8899999
Q ss_pred eeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeec
Q 038533 145 CSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNK 223 (337)
Q Consensus 145 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 223 (337)
++.|+.+++|++...+...++.+|.+.|+++.|. ....+++|+.|.+|++||+....+....... ..+..+..+
T Consensus 237 as~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~----S~cnDI~~~- 311 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG----SQCNDIVCS- 311 (459)
T ss_pred ecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc----ccccceEec-
Confidence 9999999999999999999999999999999999 5455999999999999999998776666544 566667663
Q ss_pred CCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCcee
Q 038533 224 QDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMS 303 (337)
Q Consensus 224 ~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 303 (337)
...++++..|+. |++||.+. ..+....+.+. .|+++..++++. -|.+++.|.++.+.|++......+.. -.
T Consensus 312 --~~~~~SgH~Dkk-vRfwD~Rs-~~~~~sv~~gg-~vtSl~ls~~g~-~lLsssRDdtl~viDlRt~eI~~~~s---A~ 382 (459)
T KOG0288|consen 312 --ISDVISGHFDKK-VRFWDIRS-ADKTRSVPLGG-RVTSLDLSMDGL-ELLSSSRDDTLKVIDLRTKEIRQTFS---AE 382 (459)
T ss_pred --ceeeeecccccc-eEEEeccC-CceeeEeecCc-ceeeEeeccCCe-EEeeecCCCceeeeecccccEEEEee---cc
Confidence 577889999999 99999998 55677777654 899999999999 78888999999999999322111100 01
Q ss_pred eeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 304 MYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 304 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
.+......+.+.|||++.++++|+.||.|+||++
T Consensus 383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSV 416 (459)
T ss_pred ccccccccceeEECCCCceeeeccCCCcEEEEEc
Confidence 1122344899999999999999999999999985
No 101
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.7e-28 Score=184.50 Aligned_cols=234 Identities=19% Similarity=0.282 Sum_probs=200.2
Q ss_pred cCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeE
Q 038533 65 LSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRI 142 (337)
Q Consensus 65 ~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 142 (337)
+..+|+.+++.|.++.+|. +|.+|+ | +..||--.++ +.+-++.+|+ +.|+|++.+. +.+.+
T Consensus 5 ~l~GHERplTqiKyN~eGD---------LlFscaKD~~~~vw~s~nG--erlGty~GHt-----GavW~~Did~-~s~~l 67 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD---------LLFSCAKDSTPTVWYSLNG--ERLGTYDGHT-----GAVWCCDIDW-DSKHL 67 (327)
T ss_pred ccccCccccceEEecCCCc---------EEEEecCCCCceEEEecCC--ceeeeecCCC-----ceEEEEEecC-Cccee
Confidence 3479999999999999999 999998 6 9999988888 7899999999 9999999987 88999
Q ss_pred EEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcC-----CCeEEEEECCCCC----CceeeecCCCC
Q 038533 143 GTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSA-----DGSVRIFDLRDKE----HSTIIYESPQP 212 (337)
Q Consensus 143 ~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-----dg~i~iwd~~~~~----~~~~~~~~~~~ 212 (337)
++|+.|.++++||+++|+.+..++ ...+|..+.|+ .+++++.... .+.|.++|++... ........+.+
T Consensus 68 iTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~ 146 (327)
T KOG0643|consen 68 ITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP 146 (327)
T ss_pred eeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC
Confidence 999999999999999999998887 56789999999 7777776643 4679999998443 11112222345
Q ss_pred CCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCC
Q 038533 213 DTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPP 292 (337)
Q Consensus 213 ~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 292 (337)
...++.+-|.| .+.+|++|..+|. |..||+++..+.+...+.|...|+.+.++|+.. ++++++.|.+-++||+. +
T Consensus 147 ~skit~a~Wg~-l~~~ii~Ghe~G~-is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT~s~Dttakl~D~~--t 221 (327)
T KOG0643|consen 147 DSKITSALWGP-LGETIIAGHEDGS-ISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFITGSKDTTAKLVDVR--T 221 (327)
T ss_pred ccceeeeeecc-cCCEEEEecCCCc-EEEEEcccCceeeechhhhccccccccccCCcc-eEEecccCccceeeecc--c
Confidence 68999999999 9999999999999 999999997777888888999999999999999 99999999999999999 5
Q ss_pred CCCCCCCCceeeeeCCCceeEEEEccCCCceEEEE
Q 038533 293 VAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIA 327 (337)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 327 (337)
+. .+..+....||++.+++|....++.++
T Consensus 222 l~------v~Kty~te~PvN~aaisP~~d~VilgG 250 (327)
T KOG0643|consen 222 LE------VLKTYTTERPVNTAAISPLLDHVILGG 250 (327)
T ss_pred ee------eEEEeeecccccceecccccceEEecC
Confidence 32 455566788999999999877777665
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-27 Score=205.06 Aligned_cols=291 Identities=18% Similarity=0.219 Sum_probs=227.7
Q ss_pred ccceeeeeCC-CceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccC
Q 038533 12 SENSVTHESP-YPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKS 87 (337)
Q Consensus 12 ~~~~~~~~~~-~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 87 (337)
.+.+.+|+++ ++|++++|. ...+|+|+. .|.+.+||++........ ...|.+.|....|.|..+
T Consensus 234 dkil~sFk~d~g~VtslSFrtDG~p~las~~~----~G~m~~wDLe~kkl~~v~----~nah~~sv~~~~fl~~ep---- 301 (910)
T KOG1539|consen 234 DKILMSFKQDWGRVTSLSFRTDGNPLLASGRS----NGDMAFWDLEKKKLINVT----RNAHYGSVTGATFLPGEP---- 301 (910)
T ss_pred CcEEEEEEccccceeEEEeccCCCeeEEeccC----CceEEEEEcCCCeeeeee----eccccCCcccceecCCCc----
Confidence 5678889996 999999999 456677775 899999999977655443 357888999999998887
Q ss_pred cCCccEEEEeC-C-eEEEEecC--CCCccceeeecC--------------------------------------------
Q 038533 88 SSNRHLLASSG-D-FLRLWDVG--DSSIEPVAVLNN-------------------------------------------- 119 (337)
Q Consensus 88 ~~~~~~l~~~~-~-~v~vw~~~--~~~~~~~~~~~~-------------------------------------------- 119 (337)
++++++ | .+++|=.+ ++.++.++.-.|
T Consensus 302 -----Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~ 376 (910)
T KOG1539|consen 302 -----VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL 376 (910)
T ss_pred -----eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc
Confidence 777766 5 44444322 110000000000
Q ss_pred -----------------------------------------CC------------------------CCcccCCeeEEEe
Q 038533 120 -----------------------------------------SK------------------------SSEFCAPLTSFDW 134 (337)
Q Consensus 120 -----------------------------------------~~------------------------~~~~~~~i~~~~~ 134 (337)
|. .......+++++.
T Consensus 377 ~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~v 456 (910)
T KOG1539|consen 377 HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCV 456 (910)
T ss_pred ccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEE
Confidence 00 0001246788888
Q ss_pred ecCCCCeEEEeeCCCcEEEEeCCCccchhhh---hccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCC
Q 038533 135 NEIEPKRIGTCSIDTTCTIWDIEKGVVETQL---IAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESP 210 (337)
Q Consensus 135 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 210 (337)
++ .|+..+.|+..|.|-+|++++|-....+ ..|.++|++++.+ -++.+++++.+|.+++||+.+......+..
T Consensus 457 s~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-- 533 (910)
T KOG1539|consen 457 SF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-- 533 (910)
T ss_pred ec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc--
Confidence 87 8999999999999999999999887777 5899999999999 688999999999999999998874444332
Q ss_pred CCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCC
Q 038533 211 QPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL 290 (337)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 290 (337)
...+.++..+. ....++.+..|-. |.++|..+ .+.++.+.+|...|++++|||+|+ +|++++.|++|++||+..
T Consensus 534 --~~~~~~iv~hr-~s~l~a~~~ddf~-I~vvD~~t-~kvvR~f~gh~nritd~~FS~Dgr-WlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 534 --GSSITGIVYHR-VSDLLAIALDDFS-IRVVDVVT-RKVVREFWGHGNRITDMTFSPDGR-WLISASMDSTIRTWDLPT 607 (910)
T ss_pred --CCCcceeeeee-hhhhhhhhcCcee-EEEEEchh-hhhhHHhhccccceeeeEeCCCCc-EEEEeecCCcEEEEeccC
Confidence 36788888887 7788888888887 99999998 677899999999999999999999 999999999999999993
Q ss_pred CCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcC-CcEEEEe
Q 038533 291 PPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFS-NKMQLLK 336 (337)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~iw~ 336 (337)
+. ..-...-..+..++.|+|+|.+|+++..| ..|.+|-
T Consensus 608 ~~--------lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 608 GT--------LIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred cc--------eeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 32 33444467889999999999999999877 7899983
No 103
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=3e-28 Score=203.25 Aligned_cols=286 Identities=18% Similarity=0.272 Sum_probs=209.3
Q ss_pred eEEEEe-----cceEEEeeeeccCcceEEEEEecCCCcceecC-CCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC
Q 038533 25 YAMAVC-----GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTH-PSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG 98 (337)
Q Consensus 25 ~~~~~s-----~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~-~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~ 98 (337)
.+..|+ ...||.+.. +|.|.+++.....-..+.. ...-..|..+|..+.|-|... .|++++
T Consensus 53 f~~sFs~~~n~eHiLavadE----~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~---------~lVsas 119 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADE----DGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGES---------LLVSAS 119 (720)
T ss_pred ccccccCCCCccceEEEecC----CCceeeecchhhhcchhhhhhcccccccceeEeeccCCCce---------eEEEcc
Confidence 456777 678888874 9999998865433321110 011268999999999999544 777766
Q ss_pred -C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc----------------
Q 038533 99 -D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV---------------- 160 (337)
Q Consensus 99 -~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------------- 160 (337)
| ++++||+.+.++.-...+.+|. ..|.+++|+|.+...|++|+.||.|.|||++-..
T Consensus 120 GDsT~r~Wdvk~s~l~G~~~~~GH~-----~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n 194 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGRLNLGHT-----GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHN 194 (720)
T ss_pred CCceeeeeeeccceeecceeecccc-----cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcccc
Confidence 5 9999999999554455588998 9999999999999999999999999999987432
Q ss_pred ----c-------hhhhhccCCc----eeEEEeCCCcEEEEEcC-CCeEEEEECCCCCCceee-----ecCCCC---CCCc
Q 038533 161 ----V-------ETQLIAHDKE----VYDICWGEARVFASVSA-DGSVRIFDLRDKEHSTII-----YESPQP---DTPL 216 (337)
Q Consensus 161 ----~-------~~~~~~~~~~----v~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~---~~~i 216 (337)
+ +..-+++... |+.+.|-|+..|++++. |+.|++||++........ ...+.+ ...+
T Consensus 195 ~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~ 274 (720)
T KOG0321|consen 195 TAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ 274 (720)
T ss_pred CCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee
Confidence 0 0011123333 44555558899999988 999999999987532211 111112 3456
Q ss_pred eEEEeecCCCcEEEEEEecCCEEEEEECCCCC-CCeEEeecccce--eeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCC
Q 038533 217 LRLAWNKQDLRYMATILMDSNKVVILDIRSPT-LPVAELERHRAC--VNAIAWAPQSRRHICSVGDDSQAFIWELPLPPV 293 (337)
Q Consensus 217 ~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~-~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 293 (337)
.++.... .|.+|++.+.|+. |++|+++... .++..+.++... -..-..+|++. ++++|+.|....+|.+. +.
T Consensus 275 ~nL~lDs-sGt~L~AsCtD~s-Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~-~l~SgSsd~~ayiw~vs--~~ 349 (720)
T KOG0321|consen 275 VNLILDS-SGTYLFASCTDNS-IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC-SLLSGSSDEQAYIWVVS--SP 349 (720)
T ss_pred EEEEecC-CCCeEEEEecCCc-EEEEeccccCcCchhhccCcccceeeeeeecCCCCc-eEeccCCCcceeeeeec--Cc
Confidence 7777776 7888888888998 9999998754 345555544321 12335689999 99999999999999999 43
Q ss_pred CCCCCCCceeeeeCCCceeEEEEccCC-CceEEEEcCCcEEEEeC
Q 038533 294 AGPNGIDPMSMYSAGSEINQLQWSPAQ-PDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~l 337 (337)
.. .+..+.+|...|++++|.|.. .-+++++.|..++||++
T Consensus 350 e~----~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 350 EA----PPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred cC----ChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 32 356788999999999999843 24788899999999986
No 104
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=8.5e-29 Score=191.25 Aligned_cols=244 Identities=16% Similarity=0.234 Sum_probs=204.2
Q ss_pred CcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCcccee------eecCCCCCcccCCeeEEEee
Q 038533 64 SLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVA------VLNNSKSSEFCAPLTSFDWN 135 (337)
Q Consensus 64 ~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~ 135 (337)
.+.++....+.|..|+||+. +|++|+ | .|.+||..+++.+.-. .+--+. .+|.|+.|+
T Consensus 207 ~IKFg~KSh~EcA~FSPDgq---------yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd-----~aVlci~FS 272 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQ---------YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMD-----DAVLCISFS 272 (508)
T ss_pred heecccccchhheeeCCCCc---------eEeeccccceeeeehhccchhhhhhhhhhhcceeecc-----cceEEEeec
Confidence 34467778899999999999 999999 6 9999999998532221 222233 899999999
Q ss_pred cCCCCeEEEeeCCCcEEEEeCCCccchhhhh-ccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCC
Q 038533 136 EIEPKRIGTCSIDTTCTIWDIEKGVVETQLI-AHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPD 213 (337)
Q Consensus 136 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 213 (337)
. +...+++|+.||.|++|.+++|.+++.+. +|...|+++.|+ ++..+++++.|.++++.-+.+++..+.+ .+|.
T Consensus 273 R-DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf---rGHs 348 (508)
T KOG0275|consen 273 R-DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF---RGHS 348 (508)
T ss_pred c-cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh---cCcc
Confidence 8 99999999999999999999999999997 899999999999 9999999999999999999999865554 4678
Q ss_pred CCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEee--cccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCC
Q 038533 214 TPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELE--RHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLP 291 (337)
Q Consensus 214 ~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 291 (337)
+.|+...|.+ +|.++++++.|+. |++|+.++ ..++.++. +...+|+++..-|.++..++.+...+++.|-++.
T Consensus 349 Syvn~a~ft~-dG~~iisaSsDgt-vkvW~~Kt-teC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-- 423 (508)
T KOG0275|consen 349 SYVNEATFTD-DGHHIISASSDGT-VKVWHGKT-TECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-- 423 (508)
T ss_pred ccccceEEcC-CCCeEEEecCCcc-EEEecCcc-hhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc--
Confidence 9999999999 9999999999999 99999998 56666664 3456899999999888789999999999999998
Q ss_pred CCCCCCCCCceeee---eCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 292 PVAGPNGIDPMSMY---SAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 292 ~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
. .....+. ...+...+...+|.|.++.+.+.|+.++-|.
T Consensus 424 G------QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 424 G------QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFS 465 (508)
T ss_pred c------eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEE
Confidence 2 1111111 2344567788999999999999999988775
No 105
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.4e-28 Score=188.77 Aligned_cols=248 Identities=18% Similarity=0.216 Sum_probs=199.5
Q ss_pred eeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 18 HESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 18 ~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
|.|.++|.++.|+ ...|++|+. |++|+++|+......... . .+....+|.+|.|+|.|. +|+
T Consensus 169 YDH~devn~l~FHPre~ILiS~sr----D~tvKlFDfsK~saKrA~--K-~~qd~~~vrsiSfHPsGe---------fll 232 (430)
T KOG0640|consen 169 YDHVDEVNDLDFHPRETILISGSR----DNTVKLFDFSKTSAKRAF--K-VFQDTEPVRSISFHPSGE---------FLL 232 (430)
T ss_pred hhccCcccceeecchhheEEeccC----CCeEEEEecccHHHHHHH--H-HhhccceeeeEeecCCCc---------eEE
Confidence 5788999999999 899999997 999999998765433221 1 156678899999999999 999
Q ss_pred EeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh-ccC-Cc
Q 038533 96 SSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI-AHD-KE 171 (337)
Q Consensus 96 ~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~-~~ 171 (337)
.|.+ ++++||+++-+ +... ......+.+.|+++.+++ .+++.++|+.||.|++||--+++++.++. +|. ..
T Consensus 233 vgTdHp~~rlYdv~T~Q--cfvs--anPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gse 307 (430)
T KOG0640|consen 233 VGTDHPTLRLYDVNTYQ--CFVS--ANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSE 307 (430)
T ss_pred EecCCCceeEEecccee--Eeee--cCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCce
Confidence 9997 99999999874 2211 112233449999999999 99999999999999999999999999886 454 56
Q ss_pred eeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCC---CCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCC
Q 038533 172 VYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQ---PDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP 247 (337)
Q Consensus 172 v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~ 247 (337)
|.+..|. +++++++.+.|..+++|.+.+++...... +.+ ...--+...|+. +..+++.-.+....+.-||.|+.
T Consensus 308 vcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt-GAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRta 385 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT-GAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTA 385 (430)
T ss_pred eeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe-cCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccch
Confidence 8899999 99999999999999999999998655433 221 112234566776 78888887766666999999986
Q ss_pred CCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 248 TLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
.+....-.+|.+.+..+.-+|.++ .+++|+.|-.+++|--+
T Consensus 386 dr~~l~slgHn~a~R~i~HSP~~p-~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 386 DRVALLSLGHNGAVRWIVHSPVEP-AFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhcccCCCCCceEEEeCCCCC-ceeeecccceeeeeeec
Confidence 554444468999999999999999 99999999999999765
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=5.2e-28 Score=193.22 Aligned_cols=238 Identities=21% Similarity=0.289 Sum_probs=203.7
Q ss_pred CCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCC
Q 038533 71 YPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSID 148 (337)
Q Consensus 71 ~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 148 (337)
..+.++...|... .+.+|+ | .+.++|...+ +.+..++||. ..|+.+.|+| +...+++++.|
T Consensus 220 pgi~ald~~~s~~---------~ilTGG~d~~av~~d~~s~--q~l~~~~Gh~-----kki~~v~~~~-~~~~v~~aSad 282 (506)
T KOG0289|consen 220 PGITALDIIPSSS---------KILTGGEDKTAVLFDKPSN--QILATLKGHT-----KKITSVKFHK-DLDTVITASAD 282 (506)
T ss_pred CCeeEEeecCCCC---------cceecCCCCceEEEecchh--hhhhhccCcc-----eEEEEEEecc-chhheeecCCc
Confidence 4678888888755 778877 6 9999999998 7889999999 9999999999 99999999999
Q ss_pred CcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCc
Q 038533 149 TTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLR 227 (337)
Q Consensus 149 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 227 (337)
..|+||.............|.++|+.+..+ .+.+|++++.||+..+.|++++......... .....+++.+|+| ||.
T Consensus 283 ~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHp-DgL 360 (506)
T KOG0289|consen 283 EIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHP-DGL 360 (506)
T ss_pred ceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec-cccceeEEeeEcC-Cce
Confidence 999999998887778888999999999999 7999999999999999999999866555432 3346789999999 999
Q ss_pred EEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeC
Q 038533 228 YMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSA 307 (337)
Q Consensus 228 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 307 (337)
+|.+|..|+. |+|||+.++. .+..|.+|.++|..++|+.+|- +|++++.|+.|++||++ +... .+.+. ...
T Consensus 361 ifgtgt~d~~-vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY-~Lat~add~~V~lwDLR--Kl~n---~kt~~-l~~ 431 (506)
T KOG0289|consen 361 IFGTGTPDGV-VKIWDLKSQT-NVAKFPGHTGPVKAISFSENGY-WLATAADDGSVKLWDLR--KLKN---FKTIQ-LDE 431 (506)
T ss_pred EEeccCCCce-EEEEEcCCcc-ccccCCCCCCceeEEEeccCce-EEEEEecCCeEEEEEeh--hhcc---cceee-ccc
Confidence 9999999998 9999999844 6889999999999999999996 99999999999999999 5331 11112 223
Q ss_pred CCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 308 GSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 308 ~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
..++.++.|.+.|.+|++++.|=.|++++
T Consensus 432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~ 460 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIAGSDLQVYICK 460 (506)
T ss_pred cccceeEEEcCCCCeEEeecceeEEEEEe
Confidence 34799999999999999998776666653
No 107
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=181.54 Aligned_cols=285 Identities=19% Similarity=0.313 Sum_probs=219.6
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC----C-----eE
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG----D-----FL 101 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~----~-----~v 101 (337)
.-.+++|++.-.+|+.|.+.+++.+...+.. .....|.+.|..|+-+|..+ .+|+++. + .+
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~s--kvf~h~agEvw~las~P~d~--------~ilaT~yn~~s~s~vl~~a 95 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLS--KVFFHHAGEVWDLASSPFDQ--------RILATVYNDTSDSGVLTGA 95 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhhh--hhhhcCCcceehhhcCCCCC--------ceEEEEEeccCCCcceeeE
Confidence 3456777776667999999999988877665 33367889999999999887 6888763 1 67
Q ss_pred EEEecCCCC-------ccceeeec-CCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccc-hhhhh-----c
Q 038533 102 RLWDVGDSS-------IEPVAVLN-NSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVV-ETQLI-----A 167 (337)
Q Consensus 102 ~vw~~~~~~-------~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~-----~ 167 (337)
.||.+.... ++++..+. .+- +.|.|+.|.| ++..+++.. |..|.+|++..+.. +..+. +
T Consensus 96 aiw~ipe~~~~S~~~tlE~v~~Ldteav-----g~i~cvew~P-ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e 168 (370)
T KOG1007|consen 96 AIWQIPEPLGQSNSSTLECVASLDTEAV-----GKINCVEWEP-NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE 168 (370)
T ss_pred EEEecccccCccccchhhHhhcCCHHHh-----CceeeEEEcC-CCCeeEEec-cCceEEEEcccCcchheeeccccccc
Confidence 899987642 23334443 122 6899999999 888888876 78999999987764 22222 3
Q ss_pred cCCceeEEEeC---CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEEC
Q 038533 168 HDKEVYDICWG---EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI 244 (337)
Q Consensus 168 ~~~~v~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~ 244 (337)
+....++-+|+ +++.+++.+ |+++..||+|+.+....+... |...+..+.|+|....+|++++.|+. |++||.
T Consensus 169 ~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dA--Hgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~ 244 (370)
T KOG1007|consen 169 MRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDA--HGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDT 244 (370)
T ss_pred ccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhh--hcceeeeccCCCCceEEEEEcCCCcc-EEEEec
Confidence 45667888998 366776654 789999999988866665544 66789999999966778888999998 999999
Q ss_pred CCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCC---------------------C-CCCce
Q 038533 245 RSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGP---------------------N-GIDPM 302 (337)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~---------------------~-~~~~~ 302 (337)
|+.+.|++++.+|...|.++.|+|....++++|+.|..|.+|....-...+. . .....
T Consensus 245 R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ 324 (370)
T KOG1007|consen 245 RKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLE 324 (370)
T ss_pred cCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccc
Confidence 9999999999999999999999998887999999999999998863221100 0 00112
Q ss_pred eeeeCCCceeEEEEccCCCceEEE-EcCCcEEEEe
Q 038533 303 SMYSAGSEINQLQWSPAQPDWLAI-AFSNKMQLLK 336 (337)
Q Consensus 303 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~iw~ 336 (337)
.+..|.+.|++++||.-.+++++. +.||++.|=+
T Consensus 325 tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 325 TYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS 359 (370)
T ss_pred cccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence 455799999999999999988865 7899987744
No 108
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7e-27 Score=172.00 Aligned_cols=245 Identities=22% Similarity=0.333 Sum_probs=198.3
Q ss_pred CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe
Q 038533 20 SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS 97 (337)
Q Consensus 20 ~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~ 97 (337)
|.+.|+|.+|+ |++||+|++ |.+|++..++.++....-...-..-|.+.|..++|..+.. .++.+|+++
T Consensus 88 hkgsiyc~~ws~~geliatgsn----dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~-----s~~~il~s~ 158 (350)
T KOG0641|consen 88 HKGSIYCTAWSPCGELIATGSN----DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPE-----SGGAILASA 158 (350)
T ss_pred cCccEEEEEecCccCeEEecCC----CceEEEEecccccccccCcceeeeecCCceeeeEEecCCC-----cCceEEEec
Confidence 58999999999 999999998 9999998887665433221111146899999999976533 233588887
Q ss_pred C--C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEE-eecCCCCeEEEeeCCCcEEEEeCCCccchhhhhc------
Q 038533 98 G--D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFD-WNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIA------ 167 (337)
Q Consensus 98 ~--~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~------ 167 (337)
+ | .|.+-|...+ +...-+.+|+ +.|.++- | ++-.+++|+.|.+|++||++-..++.++..
T Consensus 159 gagdc~iy~tdc~~g--~~~~a~sght-----ghilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g 228 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRG--QGFHALSGHT-----GHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG 228 (350)
T ss_pred CCCcceEEEeecCCC--CcceeecCCc-----ccEEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCC
Confidence 7 4 7777788777 7888899998 8887763 4 678999999999999999998777665531
Q ss_pred -cCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECC
Q 038533 168 -HDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR 245 (337)
Q Consensus 168 -~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~ 245 (337)
....|.+++.. .+++|++|-.|....+||++.++.+..+ ..|...|.|+.|+| ...|+++++.|.. |++-|++
T Consensus 229 lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f---~phsadir~vrfsp-~a~yllt~syd~~-ikltdlq 303 (350)
T KOG0641|consen 229 LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRF---HPHSADIRCVRFSP-GAHYLLTCSYDMK-IKLTDLQ 303 (350)
T ss_pred cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeee---CCCccceeEEEeCC-CceEEEEecccce-EEEeecc
Confidence 23578899999 6999999999999999999999855443 34788999999999 9999999999998 9999997
Q ss_pred CC---CCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 246 SP---TLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 246 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
.. ..++.....|...+..+.|+|..- -+++.+.|.++.+|-++
T Consensus 304 gdla~el~~~vv~ehkdk~i~~rwh~~d~-sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 304 GDLAHELPIMVVAEHKDKAIQCRWHPQDF-SFISSSADKTATLWALN 349 (350)
T ss_pred cchhhcCceEEEEeccCceEEEEecCccc-eeeeccCcceEEEeccC
Confidence 43 234556677999999999999987 78999999999999775
No 109
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=6.5e-28 Score=189.49 Aligned_cols=253 Identities=25% Similarity=0.467 Sum_probs=196.8
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCC--------------CCccceeeecCCCCCcccCCee
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGD--------------SSIEPVAVLNNSKSSEFCAPLT 130 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~--------------~~~~~~~~~~~~~~~~~~~~i~ 130 (337)
.+|.+.++.+.-++-+. ..+.|+=++ .|+||++.. .+.+++.++.+|. ..=.
T Consensus 148 i~h~g~~NRvr~~~~~~-------~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk-----~EGy 215 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGN-------EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK-----GEGY 215 (440)
T ss_pred cccccccceeeecccCC-------cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC-----ccce
Confidence 57788888888877754 124444444 999999853 1246788888998 6667
Q ss_pred EEEeecCCCCeEEEeeCCCcEEEEeCCCccc---hhhhhccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCcee
Q 038533 131 SFDWNEIEPKRIGTCSIDTTCTIWDIEKGVV---ETQLIAHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTI 205 (337)
Q Consensus 131 ~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~ 205 (337)
.++|||.....+++|..-+.|++|...++.- ...+.+|...|..++|+ ....|++|+.||+|+|||+|.+.....
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~ 295 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA 295 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce
Confidence 8999997677899999999999999888752 23456799999999999 478999999999999999999854444
Q ss_pred eecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCC--CCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcE
Q 038533 206 IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP--TLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQA 283 (337)
Q Consensus 206 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 283 (337)
+.. ..|++.|+.+.|+. ...+|++|+.||. ++|||+|.. ++|+..+..|..+|+++.|+|.....|++++.|.+|
T Consensus 296 ~~~-kAh~sDVNVISWnr-~~~lLasG~DdGt-~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~Qi 372 (440)
T KOG0302|consen 296 VST-KAHNSDVNVISWNR-REPLLASGGDDGT-LSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQI 372 (440)
T ss_pred eEe-eccCCceeeEEccC-CcceeeecCCCce-EEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcE
Confidence 433 36889999999998 6669999999998 999999964 478999999999999999999887799999999999
Q ss_pred EEEeCCCCCCC----CCC-----CCCceeeeeC--CCceeEEEEccCCCceE-EEEcCCcEEEE
Q 038533 284 FIWELPLPPVA----GPN-----GIDPMSMYSA--GSEINQLQWSPAQPDWL-AIAFSNKMQLL 335 (337)
Q Consensus 284 ~iw~~~~~~~~----~~~-----~~~~~~~~~~--~~~v~~~~~~~~~~~l~-~~~~d~~i~iw 335 (337)
.+||+...... ++. ...+.+++-| ...+..+.|+++-+-++ +++.|| +.||
T Consensus 373 tiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 373 TIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 99999743321 010 1234466667 45699999999876655 555665 3444
No 110
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.7e-28 Score=200.02 Aligned_cols=249 Identities=18% Similarity=0.271 Sum_probs=186.6
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCc--cceeeecCCCCCcccCCeeEEEeecCCCCeE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSI--EPVAVLNNSKSSEFCAPLTSFDWNEIEPKRI 142 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 142 (337)
.+|...|.++++.|.|. .|++|+ | +|++||+..... +..+.+... .+..|.+++|++ .++.|
T Consensus 164 ~hgtk~Vsal~~Dp~Ga---------R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~----E~h~i~sl~ys~-Tg~~i 229 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGA---------RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC----ETHQINSLQYSV-TGDQI 229 (641)
T ss_pred cCCceEEEEeeecCCCc---------eeeeccccceEEEEecccccccchhhhccCcc----cccccceeeecC-CCCeE
Confidence 67888999999999999 999999 7 999999987542 111222211 125799999999 88888
Q ss_pred EEeeCCCcEEEEeCCCcc---------c---hhhhhccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeec
Q 038533 143 GTCSIDTTCTIWDIEKGV---------V---ETQLIAHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYE 208 (337)
Q Consensus 143 ~~~~~dg~i~v~d~~~~~---------~---~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 208 (337)
++.+.....+|+|-...+ . +..-++|...+++.+|+ ....|++++.||++++||+...+....++.
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe
Confidence 888878899999954322 1 12235899999999999 477899999999999999998765444433
Q ss_pred CC---CCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCC-CC-eEEeecccc--eeeEEEeCCCCCCeEEEEcCCC
Q 038533 209 SP---QPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT-LP-VAELERHRA--CVNAIAWAPQSRRHICSVGDDS 281 (337)
Q Consensus 209 ~~---~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~-~~-~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg 281 (337)
.. +...+++.++|+| +++++|+|+.||. |.+||.+... .+ ...-.+|.. .|++|.|+++|+ +|++-+.|+
T Consensus 310 ~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGS-IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~ 386 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGS-IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDD 386 (641)
T ss_pred eccCCCcccCceeeecCC-CcchhhhcccCCc-eeeeecCCcccccceEeeeccCCCCceeEEEeccccc-hhhhccCCC
Confidence 22 2345789999999 9999999999999 9999987533 22 233356776 899999999999 999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEc------CCcEEEEe
Q 038533 282 QAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAF------SNKMQLLK 336 (337)
Q Consensus 282 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iw~ 336 (337)
.+++||++ ...++.... .-.....+-+.++|||+.+.++++.+ .|.+.+|+
T Consensus 387 tLKvWDLr--q~kkpL~~~--tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 387 TLKVWDLR--QFKKPLNVR--TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred ceeeeecc--ccccchhhh--cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEe
Confidence 99999999 655432111 11112345688999999988887653 35566654
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=2.1e-27 Score=199.93 Aligned_cols=270 Identities=17% Similarity=0.198 Sum_probs=215.6
Q ss_pred eCCCceeEEEEe-cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeE-EEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC-GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTK-LMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s-~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.|...|..+++. +..++.++. ||++++|+-..+ .+.....+ .+|.+-|.. +++-+..+ -.+++
T Consensus 12 gH~~DVr~v~~~~~~~i~s~sR----d~t~~vw~~~~~--~~l~~~~~-~~~~g~i~~~i~y~e~~~--------~~l~~ 76 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDGVCIISGSR----DGTVKVWAKKGK--QYLETHAF-EGPKGFIANSICYAESDK--------GRLVV 76 (745)
T ss_pred cCccchheeEecCCeEEeecCC----CCceeeeeccCc--ccccceec-ccCcceeeccceeccccC--------cceEe
Confidence 457778888888 788999997 999999865332 22211122 456666666 77775332 25666
Q ss_pred eC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeE
Q 038533 97 SG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 97 ~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
|+ | .+.+|.+.+. .+...+.+|+ ..|.+++... ++. +++|+.|.++++|.. +++...+++|...|++
T Consensus 77 g~~D~~i~v~~~~~~--~P~~~LkgH~-----snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 77 GGMDTTIIVFKLSQA--EPLYTLKGHK-----SNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWA 145 (745)
T ss_pred ecccceEEEEecCCC--Cchhhhhccc-----cceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchheee
Confidence 66 6 9999999988 7899999999 9999998764 554 999999999999975 5667779999999999
Q ss_pred EEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEe
Q 038533 175 ICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAEL 254 (337)
Q Consensus 175 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 254 (337)
++.-+.+.++||+.|.+|++|.-.+. . ....+|...|+.+++-+ ...|++++.||. |++|++. +..+.++
T Consensus 146 v~~l~e~~~vTgsaDKtIklWk~~~~--l---~tf~gHtD~VRgL~vl~--~~~flScsNDg~-Ir~w~~~--ge~l~~~ 215 (745)
T KOG0301|consen 146 VASLPENTYVTGSADKTIKLWKGGTL--L---KTFSGHTDCVRGLAVLD--DSHFLSCSNDGS-IRLWDLD--GEVLLEM 215 (745)
T ss_pred eeecCCCcEEeccCcceeeeccCCch--h---hhhccchhheeeeEEec--CCCeEeecCCce-EEEEecc--Cceeeee
Confidence 99887779999999999999987332 2 22235889999999985 567889999999 9999994 5678899
Q ss_pred ecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCC-CceeEEEEccCCCceEEEEcCCcEE
Q 038533 255 ERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAG-SEINQLQWSPAQPDWLAIAFSNKMQ 333 (337)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~ 333 (337)
.+|..-+.++....++. .++++++|++++||+.. . +.....|. ..|+++.+-++| .++++++||.|+
T Consensus 216 ~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~--e--------~~q~I~lPttsiWsa~~L~Ng-DIvvg~SDG~Vr 283 (745)
T KOG0301|consen 216 HGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD--E--------CVQVITLPTTSIWSAKVLLNG-DIVVGGSDGRVR 283 (745)
T ss_pred eccceEEEEEEecCCCC-eEEEecCCceEEEeecC--c--------eEEEEecCccceEEEEEeeCC-CEEEeccCceEE
Confidence 99999999999777776 89999999999999998 3 33333444 479999999999 599999999999
Q ss_pred EEe
Q 038533 334 LLK 336 (337)
Q Consensus 334 iw~ 336 (337)
||.
T Consensus 284 VfT 286 (745)
T KOG0301|consen 284 VFT 286 (745)
T ss_pred EEE
Confidence 995
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.2e-28 Score=180.09 Aligned_cols=249 Identities=17% Similarity=0.241 Sum_probs=198.8
Q ss_pred eeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecC--CCCcccCcCCccE
Q 038533 18 HESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDP--NSSSRKSSSNRHL 93 (337)
Q Consensus 18 ~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~--~~~~~~~~~~~~~ 93 (337)
-.|.+.|..+... |++|||++. |++|+|+........... .. +.+|.++|..++|.. .|. +
T Consensus 8 t~H~D~IHda~lDyygkrlATcsS----D~tVkIf~v~~n~~s~ll-~~-L~Gh~GPVwqv~wahPk~G~---------i 72 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSS----DGTVKIFEVRNNGQSKLL-AE-LTGHSGPVWKVAWAHPKFGT---------I 72 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecC----CccEEEEEEcCCCCceee-eE-ecCCCCCeeEEeecccccCc---------E
Confidence 3567778877777 999999998 999999988776641111 13 389999999999965 455 9
Q ss_pred EEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCC-CCeEEEeeCCCcEEEEeCCCc---cchhhhhc
Q 038533 94 LASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIE-PKRIGTCSIDTTCTIWDIEKG---VVETQLIA 167 (337)
Q Consensus 94 l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~l~~~~~dg~i~v~d~~~~---~~~~~~~~ 167 (337)
||+++ | .|.||.-.+++.........|. ..|++++|.|.+ +-.|++++.||.|.|.+.+.. ...+...+
T Consensus 73 LAScsYDgkVIiWke~~g~w~k~~e~~~h~-----~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGRWTKAYEHAAHS-----ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred eeEeecCceEEEEecCCCchhhhhhhhhhc-----ccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence 99999 6 9999999999877777788888 999999999843 457899999999999988765 23345568
Q ss_pred cCCceeEEEeCC----C-----------cEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCC---CcEE
Q 038533 168 HDKEVYDICWGE----A-----------RVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQD---LRYM 229 (337)
Q Consensus 168 ~~~~v~~~~~~~----~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~l 229 (337)
|.-.|++++|.| + +.|++|+.|..|+||+....+-.... ....|...++.++|.|.. ..+|
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~-~l~~H~dwVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLER-TLEGHKDWVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhh-hhhhcchhhhhhhhccccCCCceee
Confidence 999999999983 3 57999999999999999987432222 134688999999999954 3479
Q ss_pred EEEEecCCEEEEEECCCCCCC--eEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 230 ATILMDSNKVVILDIRSPTLP--VAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 230 ~~~~~d~~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
++++.|+. +.||-.+....+ ...+......+..+.|++.|. +|+.++.|+.+.+|.-+
T Consensus 227 AS~SqDg~-viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 227 ASCSQDGT-VIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-ILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEecCCCc-EEEEEecCccCcccccccccCCcceEEEEEecccc-EEEEecCCcEEEEEEeC
Confidence 99999999 999988753222 122344567899999999999 99999999999999876
No 113
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=1.7e-27 Score=181.64 Aligned_cols=288 Identities=18% Similarity=0.285 Sum_probs=218.6
Q ss_pred eeeCCCceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCc------cee----cCCCcCCCCCCCCeEEEecCCCC
Q 038533 17 THESPYPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESL------SIK----THPSLSFDHPYPPTKLMFDPNSS 83 (337)
Q Consensus 17 ~~~~~~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~------~~~----~~~~~~~~~~~~i~~i~~~~~~~ 83 (337)
.-.|.+.|.++... |+++++|+. ||.|.+||++..+. ... ........|...|..+.|-|-..
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGga----dgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt 114 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGA----DGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT 114 (397)
T ss_pred eccCCCccceeeeccccceEEeecCC----CccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC
Confidence 34567889999998 999999998 99999999986441 010 11122357888999999999776
Q ss_pred cccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCC--CCeEEEeeCCCcEEEEeCCCc
Q 038533 84 SRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIE--PKRIGTCSIDTTCTIWDIEKG 159 (337)
Q Consensus 84 ~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~l~~~~~dg~i~v~d~~~~ 159 (337)
-++.+++ | +++|||.++.+ ....|+-. +.|.+-+|+|.. ..++|+|..+-.|++.|+.+|
T Consensus 115 --------GmFtssSFDhtlKVWDtnTlQ--~a~~F~me------~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG 178 (397)
T KOG4283|consen 115 --------GMFTSSSFDHTLKVWDTNTLQ--EAVDFKME------GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG 178 (397)
T ss_pred --------ceeecccccceEEEeecccce--eeEEeecC------ceeehhhcChhhhcceEEEEecCCCcEEEEeccCC
Confidence 4778877 7 99999999984 44444432 678888888842 358899999999999999999
Q ss_pred cchhhhhccCCceeEEEeCC--CcEEEEEcCCCeEEEEECCCC------------CCceeeecCCCCCCCceEEEeecCC
Q 038533 160 VVETQLIAHDKEVYDICWGE--ARVFASVSADGSVRIFDLRDK------------EHSTIIYESPQPDTPLLRLAWNKQD 225 (337)
Q Consensus 160 ~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~~i~~~~~~~~~ 225 (337)
...+.+.+|.+.|.++.|+| +-.|++|+.||.|++||+|.. +.+........|.+.+..++|.. +
T Consensus 179 s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS-d 257 (397)
T KOG4283|consen 179 SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS-D 257 (397)
T ss_pred cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc-c
Confidence 99999999999999999994 667899999999999999865 12222233446788999999998 9
Q ss_pred CcEEEEEEecCCEEEEEECCCCCCCeEEee--cccc----eeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 038533 226 LRYMATILMDSNKVVILDIRSPTLPVAELE--RHRA----CVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGI 299 (337)
Q Consensus 226 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~--~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 299 (337)
+.++++++.|.. +++|+..++...+..+- .|.. .+. +. +.+.. .++---.++.+.++++- + +.
T Consensus 258 ~~~l~~~gtd~r-~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~-vfv~~p~~~~lall~~~--s-----gs 326 (397)
T KOG4283|consen 258 ARYLASCGTDDR-IRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSD-VFVLFPNDGSLALLNLL--E-----GS 326 (397)
T ss_pred chhhhhccCccc-eEEeecccCcccccccccccccccccceEE-Ee-ecccc-eEEEEecCCeEEEEEcc--C-----ce
Confidence 999999999998 99999987554333221 1111 111 22 23333 45555566888888887 3 33
Q ss_pred CceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 300 DPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 300 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
....+..|...|.+.++-|+-+.+.++..|+.+..|-
T Consensus 327 ~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 327 FVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred EEEeeecccceeeEEeecCchhhhhccccCCcccccc
Confidence 4567778888899999999988899999999998884
No 114
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2.6e-27 Score=200.37 Aligned_cols=276 Identities=14% Similarity=0.189 Sum_probs=217.8
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCC--------------------------------CcCCCCCCCCeEEEe
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHP--------------------------------SLSFDHPYPPTKLMF 78 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~--------------------------------~~~~~~~~~i~~i~~ 78 (337)
...+.+++. |++|++|+++.-........ .-..+....+.+++.
T Consensus 392 ~~cF~TCSs----D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~v 467 (1080)
T KOG1408|consen 392 RGCFTTCSS----DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAV 467 (1080)
T ss_pred ccceeEecC----CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEE
Confidence 456788886 99999999875221100000 000123346889999
Q ss_pred cCCCCcccCcCCccEEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecC--CCCeEEEeeCCCcEEEE
Q 038533 79 DPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEI--EPKRIGTCSIDTTCTIW 154 (337)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~v~ 154 (337)
+|+++ .||+|.. .++||++..- +....+..|. ..|.|+.|+.. ..++|++++.|..|+||
T Consensus 468 Sp~gq---------hLAsGDr~GnlrVy~Lq~l--~~~~~~eAHe-----sEilcLeyS~p~~~~kLLASasrdRlIHV~ 531 (1080)
T KOG1408|consen 468 SPDGQ---------HLASGDRGGNLRVYDLQEL--EYTCFMEAHE-----SEILCLEYSFPVLTNKLLASASRDRLIHVY 531 (1080)
T ss_pred CCCcc---------eecccCccCceEEEEehhh--hhhhheeccc-----ceeEEEeecCchhhhHhhhhccCCceEEEE
Confidence 99999 9999984 9999999987 6777888888 99999999853 35789999999999999
Q ss_pred eCCCc-cchhhhhccCCceeEEEeC-CC--cEEEEEcCCCeEEEEECCCCCCceeeecC--CCCCCCceEEEeecCCCcE
Q 038533 155 DIEKG-VVETQLIAHDKEVYDICWG-EA--RVFASVSADGSVRIFDLRDKEHSTIIYES--PQPDTPLLRLAWNKQDLRY 228 (337)
Q Consensus 155 d~~~~-~~~~~~~~~~~~v~~~~~~-~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~ 228 (337)
|.... .++.++.+|...|+++.|. .+ ..+++++.|..|.+--.+.......+... ......++.++..| +.++
T Consensus 532 Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~ 610 (1080)
T KOG1408|consen 532 DVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKL 610 (1080)
T ss_pred ecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-Ccce
Confidence 98654 4677889999999999999 54 78999999998855333322211111111 11246789999999 9999
Q ss_pred EEEEEecCCEEEEEECCCCCCCeEEee---cccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeee
Q 038533 229 MATILMDSNKVVILDIRSPTLPVAELE---RHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMY 305 (337)
Q Consensus 229 l~~~~~d~~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 305 (337)
+++++.|.+ |+|||+.+ ++..+.|+ +|.+....+...|.|- |+++...|.++.++|.. . ++....++
T Consensus 611 v~t~cQDrn-irif~i~s-gKq~k~FKgs~~~eG~lIKv~lDPSgi-Y~atScsdktl~~~Df~--s-----gEcvA~m~ 680 (1080)
T KOG1408|consen 611 VVTVCQDRN-IRIFDIES-GKQVKSFKGSRDHEGDLIKVILDPSGI-YLATSCSDKTLCFVDFV--S-----GECVAQMT 680 (1080)
T ss_pred EEEEecccc-eEEEeccc-cceeeeecccccCCCceEEEEECCCcc-EEEEeecCCceEEEEec--c-----chhhhhhc
Confidence 999999999 99999998 55566664 4667788999999999 99999999999999999 3 33456889
Q ss_pred eCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 306 SAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 306 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
+|...|+.+.|.+|.+.|++++.||.|.||+|
T Consensus 681 GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 681 GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred CcchheeeeeecccchhheeecCCceEEEEEC
Confidence 99999999999999999999999999999986
No 115
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.5e-27 Score=206.77 Aligned_cols=234 Identities=21% Similarity=0.316 Sum_probs=198.9
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.|.+.|.+++|. ++.|++|+. |.++++|+.......... .+|...|.++...+. ++++
T Consensus 247 GH~g~V~~l~~~~~~~~lvsgS~----D~t~rvWd~~sg~C~~~l-----~gh~stv~~~~~~~~-----------~~~s 306 (537)
T KOG0274|consen 247 GHFGGVWGLAFPSGGDKLVSGST----DKTERVWDCSTGECTHSL-----QGHTSSVRCLTIDPF-----------LLVS 306 (537)
T ss_pred CCCCCceeEEEecCCCEEEEEec----CCcEEeEecCCCcEEEEe-----cCCCceEEEEEccCc-----------eEee
Confidence 468999999999 999999997 999999996655544443 689999999987653 6677
Q ss_pred eC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeE
Q 038533 97 SG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 97 ~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
|+ | +|++|+++++ ..+..+.+|. .+|.++..+ +.++++|+.|++|++||+.++++++.+.+|...|++
T Consensus 307 gs~D~tVkVW~v~n~--~~l~l~~~h~-----~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~s 376 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNG--ACLNLLRGHT-----GPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYS 376 (537)
T ss_pred ccCCceEEEEeccCc--ceEEEecccc-----ccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEE
Confidence 66 6 9999999988 7888888888 999999984 789999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEEcCCCeEEEEECCCC-CCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEE
Q 038533 175 ICWGEARVFASVSADGSVRIFDLRDK-EHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAE 253 (337)
Q Consensus 175 ~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~ 253 (337)
+.+...+.+++|+.|++|++||+++. ++...+ ..|..-+..+.+ .+++|++++.|+. |++||..+ +.+++.
T Consensus 377 l~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl---~~h~~~v~~l~~---~~~~Lvs~~aD~~-Ik~WD~~~-~~~~~~ 448 (537)
T KOG0274|consen 377 LIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTL---QGHTSLVSSLLL---RDNFLVSSSADGT-IKLWDAEE-GECLRT 448 (537)
T ss_pred EEecCcceEEeeeeccceEeecCCchhhhhhhh---cCCccccccccc---ccceeEecccccc-EEEeeccc-Cceeee
Confidence 98873389999999999999999999 544333 345666766666 6799999999998 99999998 667888
Q ss_pred eec-ccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCC
Q 038533 254 LER-HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPV 293 (337)
Q Consensus 254 ~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 293 (337)
+.+ |...|..+++. .+ .+++++.||.+++||++..+.
T Consensus 449 ~~~~~~~~v~~l~~~--~~-~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 449 LEGRHVGGVSALALG--KE-EILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred eccCCcccEEEeecC--cc-eEEEEecCCeeEEEecccCch
Confidence 887 67888888887 33 799999999999999995543
No 116
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.9e-29 Score=219.11 Aligned_cols=295 Identities=22% Similarity=0.351 Sum_probs=227.3
Q ss_pred eEEEEe---cceEEEeeeec------cCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 25 YAMAVC---GQRIAVGSFIE------DYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 25 ~~~~~s---~~~la~g~~~~------~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
-.++|+ ..+||+|+..+ +.+.++.||.++........+..-......+.+.++|.+.+. +. .-++|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~----~~-~GlIa 84 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGS----HS-HGLIA 84 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCC----Cc-cceee
Confidence 346777 33666666522 226678888888766553222233356677899999999887 00 01477
Q ss_pred EeC-C-eEEEEecCC----CCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhh--hc
Q 038533 96 SSG-D-FLRLWDVGD----SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQL--IA 167 (337)
Q Consensus 96 ~~~-~-~v~vw~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--~~ 167 (337)
.|. | .|.+||... .+...+.+...|+ +.|..++|++..++++|+|+.||.|.|||+..-+.-..+ ..
T Consensus 85 GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~-----G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~ 159 (1049)
T KOG0307|consen 85 GGLEDGNIVLYDPASIIANASEEVLATKSKHT-----GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQA 159 (1049)
T ss_pred ccccCCceEEecchhhccCcchHHHhhhcccC-----CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCC
Confidence 776 4 999999865 3345667777888 999999999977889999999999999999875543333 12
Q ss_pred cCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC--EEEEEE
Q 038533 168 HDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN--KVVILD 243 (337)
Q Consensus 168 ~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~--~i~i~d 243 (337)
..+.|.+++|+ -.+.|++++.+|.+.|||+|..+.+..+... .....+..++|+|.....+++++.|.. .|.+||
T Consensus 160 ~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~-~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWD 238 (1049)
T KOG0307|consen 160 PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT-PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWD 238 (1049)
T ss_pred CcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC-CCccceeeeeeCCCCceeeeeecCCCCCceeEeec
Confidence 45789999999 4789999999999999999998755444333 233568899999987888888887765 599999
Q ss_pred CCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCce
Q 038533 244 IRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDW 323 (337)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 323 (337)
+|....+++++++|...|.++.|++.+..+|++++.|++|.+|+.+ + ++....+......+..+.|+|..+.+
T Consensus 239 lR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~--t-----gEvl~~~p~~~nW~fdv~w~pr~P~~ 311 (1049)
T KOG0307|consen 239 LRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN--T-----GEVLGELPAQGNWCFDVQWCPRNPSV 311 (1049)
T ss_pred ccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC--C-----ceEeeecCCCCcceeeeeecCCCcch
Confidence 9998899999999999999999999986699999999999999999 3 22233444567889999999999866
Q ss_pred EE-EEcCCcEEEEeC
Q 038533 324 LA-IAFSNKMQLLKV 337 (337)
Q Consensus 324 ~~-~~~d~~i~iw~l 337 (337)
++ ++.||.|.|+.+
T Consensus 312 ~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 312 MAAASFDGKISIYSL 326 (1049)
T ss_pred hhhheeccceeeeee
Confidence 65 568999999864
No 117
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-27 Score=191.41 Aligned_cols=247 Identities=19% Similarity=0.319 Sum_probs=195.9
Q ss_pred CCceeEEEEe---------cceEEEeeeeccCcceEEEEEecCCCcceec----------------CCCcCCCCCCCCeE
Q 038533 21 PYPLYAMAVC---------GQRIAVGSFIEDYTNRVDVVSFEPESLSIKT----------------HPSLSFDHPYPPTK 75 (337)
Q Consensus 21 ~~~v~~~~~s---------~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~----------------~~~~~~~~~~~i~~ 75 (337)
+....|++|. |+++|+|+. +..|.|||++.....+.. ......+|+.+|.+
T Consensus 173 pafPLC~ewld~~~~~~~~gNyvAiGtm----dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~ 248 (463)
T KOG0270|consen 173 PAFPLCIEWLDHGSKSGGAGNYVAIGTM----DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLA 248 (463)
T ss_pred cCcchhhhhhhcCCCCCCCcceEEEecc----CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHH
Confidence 4556788886 789999998 999999998854432111 00112469999999
Q ss_pred EEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEE
Q 038533 76 LMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTI 153 (337)
Q Consensus 76 i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 153 (337)
+.|+..-+ ++||+|+ | +|++||+.++ ++...+..|. ..|.+++|+|..+..|++|+.|++|.+
T Consensus 249 Ls~n~~~~--------nVLaSgsaD~TV~lWD~~~g--~p~~s~~~~~-----k~Vq~l~wh~~~p~~LLsGs~D~~V~l 313 (463)
T KOG0270|consen 249 LSWNRNFR--------NVLASGSADKTVKLWDVDTG--KPKSSITHHG-----KKVQTLEWHPYEPSVLLSGSYDGTVAL 313 (463)
T ss_pred HHhccccc--------eeEEecCCCceEEEEEcCCC--CcceehhhcC-----CceeEEEecCCCceEEEeccccceEEe
Confidence 99999888 7999999 6 9999999999 6888888887 999999999999999999999999999
Q ss_pred EeCCCccchhhhhccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEE
Q 038533 154 WDIEKGVVETQLIAHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMAT 231 (337)
Q Consensus 154 ~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 231 (337)
.|.+........-...+.|..++|+ ....++++..||+++-+|+|+.... ++....|..+|.++++++....++++
T Consensus 314 ~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~--vwt~~AHd~~ISgl~~n~~~p~~l~t 391 (463)
T KOG0270|consen 314 KDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP--VWTLKAHDDEISGLSVNIQTPGLLST 391 (463)
T ss_pred eeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc--eeEEEeccCCcceEEecCCCCcceee
Confidence 9998643332222356789999999 4778999999999999999998633 33444589999999999988999999
Q ss_pred EEecCCEEEEEECCCCCC-CeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 232 ILMDSNKVVILDIRSPTL-PVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 232 ~~~d~~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
++.++. |++|++..... .+....-.-+...|.++.|+-...++.|+..+.++|||+.
T Consensus 392 ~s~d~~-Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 392 ASTDKV-VKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred ccccce-EEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence 999998 99999875221 1111111123467888889888788999999999999998
No 118
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.9e-27 Score=190.61 Aligned_cols=251 Identities=14% Similarity=0.192 Sum_probs=203.1
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCC
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGD 108 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~ 108 (337)
+.+++++.. ....|.+|.+.......+. .--+++|.+++-+|.|. +|+.|. . .+++|.+.+
T Consensus 50 ~~yllsaq~---~rp~l~vw~i~k~~~~~q~-----~v~Pg~v~al~s~n~G~---------~l~ag~i~g~lYlWelss 112 (476)
T KOG0646|consen 50 NEYLLSAQL---KRPLLHVWEILKKDQVVQY-----IVLPGPVHALASSNLGY---------FLLAGTISGNLYLWELSS 112 (476)
T ss_pred hhheeeecc---cCccccccccCchhhhhhh-----cccccceeeeecCCCce---------EEEeecccCcEEEEEecc
Confidence 346666664 4668899988766544432 45678899999999998 888875 3 999999999
Q ss_pred CCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCC---------ccchhhhhccCCceeEEEeCC
Q 038533 109 SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEK---------GVVETQLIAHDKEVYDICWGE 179 (337)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~---------~~~~~~~~~~~~~v~~~~~~~ 179 (337)
+ .++..+..|- ..|+|+.|+. ++.+|++|+.||.|.+|++.+ -++++.+..|.-+|+++....
T Consensus 113 G--~LL~v~~aHY-----Q~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~ 184 (476)
T KOG0646|consen 113 G--ILLNVLSAHY-----QSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGS 184 (476)
T ss_pred c--cHHHHHHhhc-----cceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecC
Confidence 9 7788888887 9999999997 999999999999999998642 346778889999999999883
Q ss_pred ---CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCC--------
Q 038533 180 ---ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT-------- 248 (337)
Q Consensus 180 ---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~-------- 248 (337)
..++++++.|.++++||+..+.....+... ..+.+++.+| .+..+++|+.+|. |.+.++....
T Consensus 185 Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp----~si~av~lDp-ae~~~yiGt~~G~-I~~~~~~~~~~~~~~v~~ 258 (476)
T KOG0646|consen 185 GGTNARLYTASEDRTIKLWDLSLGVLLLTITFP----SSIKAVALDP-AERVVYIGTEEGK-IFQNLLFKLSGQSAGVNQ 258 (476)
T ss_pred CCccceEEEecCCceEEEEEeccceeeEEEecC----CcceeEEEcc-cccEEEecCCcce-EEeeehhcCCcccccccc
Confidence 578999999999999999999866665443 7899999999 9999999999998 8888775422
Q ss_pred -------CCeEEeecccc--eeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCce-eeeeCCCceeEEEEcc
Q 038533 249 -------LPVAELERHRA--CVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPM-SMYSAGSEINQLQWSP 318 (337)
Q Consensus 249 -------~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~ 318 (337)
..+..+.+|.+ +|+|++.+-||. +|++|+.||+++|||+... +++ .+....++|+.+.+.|
T Consensus 259 k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S~--------Q~iRtl~~~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 259 KGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYSK--------QCIRTLQTSKGPVTNLQINP 329 (476)
T ss_pred cccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecchH--------HHHHHHhhhccccceeEeec
Confidence 12345678887 999999999999 9999999999999999822 233 2222567888888866
Q ss_pred CCC
Q 038533 319 AQP 321 (337)
Q Consensus 319 ~~~ 321 (337)
-.+
T Consensus 330 ~~~ 332 (476)
T KOG0646|consen 330 LER 332 (476)
T ss_pred ccc
Confidence 544
No 119
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.96 E-value=2.9e-27 Score=182.71 Aligned_cols=292 Identities=15% Similarity=0.218 Sum_probs=219.0
Q ss_pred CCCceeEEEEe-------cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCcc
Q 038533 20 SPYPLYAMAVC-------GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRH 92 (337)
Q Consensus 20 ~~~~v~~~~~s-------~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~ 92 (337)
+..+|+.++|+ .+.+|+.+ .+.+.+|+...+........-...+|++....++|+-+.. ++.-
T Consensus 37 ~~~~I~gv~fN~~~~~~e~~vfatvG-----~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~-----~~~p 106 (385)
T KOG1034|consen 37 HNKPIFGVAFNSFLGCDEPQVFATVG-----GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN-----TGNP 106 (385)
T ss_pred CCCccceeeeehhcCCCCCceEEEeC-----CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC-----CCCe
Confidence 45789999998 57788887 7999999998877432221233346888899999986543 1112
Q ss_pred EEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhh---hc
Q 038533 93 LLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQL---IA 167 (337)
Q Consensus 93 ~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~---~~ 167 (337)
++|.++- .|+|.|+.++ ++...+.+|. ..|..+.++|.+.+++++++.|..|++|++++..++..+ .+
T Consensus 107 ~la~~G~~GvIrVid~~~~--~~~~~~~ghG-----~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~eg 179 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSG--QCSKNYRGHG-----GSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEG 179 (385)
T ss_pred eEEeecceeEEEEEecchh--hhccceeccC-----ccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccccc
Confidence 6666663 9999999999 7888899998 999999999988899999999999999999999988766 47
Q ss_pred cCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceee-------------------------ecCCCCCCCceEEEe
Q 038533 168 HDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTII-------------------------YESPQPDTPLLRLAW 221 (337)
Q Consensus 168 ~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------------------~~~~~~~~~i~~~~~ 221 (337)
|.+.|.++.|+ ++.++++++.|.+|++|++...+....+ .....|...|-|+.|
T Consensus 180 HrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw 259 (385)
T KOG1034|consen 180 HRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW 259 (385)
T ss_pred ccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH
Confidence 99999999999 8999999999999999999843211000 011235566777777
Q ss_pred ecCCCcEEEEEEecCCEEEEEECCCCCCC-------------eEEeecccceeeE--EEeCCCCCCeEEEEcCCCcEEEE
Q 038533 222 NKQDLRYMATILMDSNKVVILDIRSPTLP-------------VAELERHRACVNA--IAWAPQSRRHICSVGDDSQAFIW 286 (337)
Q Consensus 222 ~~~~~~~l~~~~~d~~~i~i~d~~~~~~~-------------~~~~~~~~~~v~~--~~~~~~~~~~l~~~~~dg~i~iw 286 (337)
-++++++-+.++. |..|.....++. +.++......|+- .+|.|-++ +||.|...|.+.+|
T Consensus 260 ---~gd~ilSkscena-I~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~-~la~gnq~g~v~vw 334 (385)
T KOG1034|consen 260 ---FGDFILSKSCENA-IVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK-MLALGNQSGKVYVW 334 (385)
T ss_pred ---HhhheeecccCce-EEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH-HHhhccCCCcEEEE
Confidence 4688888888887 999987321211 2223333334444 45677788 99999999999999
Q ss_pred eCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 287 ELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
|++ ....+ ....+........|.+.+|+.|+..|+..+.|+.|.-|+
T Consensus 335 dL~--~~ep~-~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 335 DLD--NNEPP-KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ECC--CCCCc-cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 999 43221 111122223456799999999999999999999998886
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.5e-27 Score=182.65 Aligned_cols=240 Identities=19% Similarity=0.290 Sum_probs=205.7
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT 144 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 144 (337)
.+|.+.|..++-....+ ++.+++ | +.+||.++++ .++..+.+|. +.|.++.|++ .+.++++
T Consensus 145 ~GHkDGiW~Vaa~~tqp---------i~gtASADhTA~iWs~Esg--~CL~~Y~GH~-----GSVNsikfh~-s~~L~lT 207 (481)
T KOG0300|consen 145 EGHKDGIWHVAADSTQP---------ICGTASADHTARIWSLESG--ACLATYTGHT-----GSVNSIKFHN-SGLLLLT 207 (481)
T ss_pred cccccceeeehhhcCCc---------ceeecccccceeEEeeccc--cceeeecccc-----cceeeEEecc-ccceEEE
Confidence 78999999999887777 999988 6 9999999999 8999999999 9999999998 9999999
Q ss_pred eeCCCcEEEEeC------CC----------------------------------ccchhhhhccCCceeEEEeC-CCcEE
Q 038533 145 CSIDTTCTIWDI------EK----------------------------------GVVETQLIAHDKEVYDICWG-EARVF 183 (337)
Q Consensus 145 ~~~dg~i~v~d~------~~----------------------------------~~~~~~~~~~~~~v~~~~~~-~~~~l 183 (337)
++.|++-+||.. .. ..++..+.+|.+.|.+..|. .++.+
T Consensus 208 aSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~ 287 (481)
T KOG0300|consen 208 ASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQM 287 (481)
T ss_pred ccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCccee
Confidence 999999999972 11 01445567888889999999 89999
Q ss_pred EEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeE
Q 038533 184 ASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNA 263 (337)
Q Consensus 184 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~ 263 (337)
++++.|.+..+||+++++....+ .+|+..++.++-+| +.+++++.+.|.. .++||.+..-..+..|++|...|++
T Consensus 288 vTaSWDRTAnlwDVEtge~v~~L---tGHd~ELtHcstHp-tQrLVvTsSrDtT-FRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 288 VTASWDRTANLWDVETGEVVNIL---TGHDSELTHCSTHP-TQRLVVTSSRDTT-FRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred eeeeccccceeeeeccCceeccc---cCcchhccccccCC-cceEEEEeccCce-eEeccchhhcceeeeecccccceeE
Confidence 99999999999999999854443 35788899999999 8999999999988 9999999755677889999999999
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 264 IAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 264 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
+.|..+.+ +++|+.|.+|++||++ .+.. ++.......+++.++.+..++.++.--.+..|++|+|
T Consensus 363 ~vF~~dd~--vVSgSDDrTvKvWdLr--NMRs-----plATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 363 VVFNTDDR--VVSGSDDRTVKVWDLR--NMRS-----PLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred EEEecCCc--eeecCCCceEEEeeec--cccC-----cceeeecCCccceeEeecCCceEEeccCCceEEEEec
Confidence 99998875 9999999999999999 6554 5555567889999999988875555556678999986
No 121
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=2.5e-26 Score=176.16 Aligned_cols=240 Identities=18% Similarity=0.206 Sum_probs=188.2
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEe
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTC 145 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 145 (337)
..-.+.|..+.|+|.+. .+|+++.| ++++|++... .....+. |. .++.+++|. +...+++|
T Consensus 10 npP~d~IS~v~f~~~~~--------~LLvssWDgslrlYdv~~~--~l~~~~~-~~-----~plL~c~F~--d~~~~~~G 71 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSS--------DLLVSSWDGSLRLYDVPAN--SLKLKFK-HG-----APLLDCAFA--DESTIVTG 71 (323)
T ss_pred CCChhceeeEEEcCcCC--------cEEEEeccCcEEEEeccch--hhhhhee-cC-----Cceeeeecc--CCceEEEe
Confidence 44567899999998877 67777778 9999999988 3333443 34 899999997 46889999
Q ss_pred eCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecC
Q 038533 146 SIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQ 224 (337)
Q Consensus 146 ~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 224 (337)
+.||.|+.+|+++++.. .+..|..+|.++... ..+.+++|+.|++|++||.|......... ....|.++..
T Consensus 72 ~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d----~~kkVy~~~v--- 143 (323)
T KOG1036|consen 72 GLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD----QGKKVYCMDV--- 143 (323)
T ss_pred ccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc----cCceEEEEec---
Confidence 99999999999888743 455699999999999 67899999999999999999744333322 2358888877
Q ss_pred CCcEEEEEEecCCEEEEEECCCCCCCeEEe-ecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCcee
Q 038533 225 DLRYMATILMDSNKVVILDIRSPTLPVAEL-ERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMS 303 (337)
Q Consensus 225 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 303 (337)
.++.|++|+.+.. +.+||+|+...+.+.- ......++++++.|++. =++.++-||+|.+=.++..... ....+.
T Consensus 144 ~g~~LvVg~~~r~-v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~e-Gy~~sSieGRVavE~~d~s~~~---~skkya 218 (323)
T KOG1036|consen 144 SGNRLVVGTSDRK-VLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGE-GYVVSSIEGRVAVEYFDDSEEA---QSKKYA 218 (323)
T ss_pred cCCEEEEeecCce-EEEEEcccccchhhhccccceeEEEEEEEecCCC-ceEEEeecceEEEEccCCchHH---hhhcee
Confidence 6789999999988 9999999977655332 23356899999999887 7888999999988777732111 122345
Q ss_pred eeeCC---------CceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 304 MYSAG---------SEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 304 ~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
+..|. -+|++++|+|--..+++++.||.|.+|++
T Consensus 219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccC
Confidence 55553 27999999998778999999999999985
No 122
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.1e-26 Score=175.90 Aligned_cols=289 Identities=13% Similarity=0.166 Sum_probs=204.3
Q ss_pred CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceec--CCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 20 SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKT--HPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 20 ~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~--~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
|.+.|++++|+ |++||+++. |+.|+||+++.-...... ...++.+ -.+.+.|.||.+ .+++
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~----Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~FapDc~--------s~vv 149 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISG----DRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVFAPDCK--------SVVV 149 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeC----CceEEEEecchhhhhhhhHhhccccCC---CceEEEECCCcc--------eEEE
Confidence 67899999999 999999997 999999998753322111 1122233 357889999998 4555
Q ss_pred EeC-C-eEEEEecCCCC---cc-ceeeecC-CCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhcc
Q 038533 96 SSG-D-FLRLWDVGDSS---IE-PVAVLNN-SKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAH 168 (337)
Q Consensus 96 ~~~-~-~v~vw~~~~~~---~~-~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 168 (337)
++- + ++++|.+...+ .. ....... |-+..+...|..+-... ++.+|++++.|..|.+|+++ |+.+..+...
T Consensus 150 ~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtn 227 (420)
T KOG2096|consen 150 SVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTN 227 (420)
T ss_pred EEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence 554 4 99999886432 00 0000110 11222335666666665 78999999999999999997 8888888766
Q ss_pred CCceeEEEeC-CCcEEEEEcCCCeEEEEECCCC-----CCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEE
Q 038533 169 DKEVYDICWG-EARVFASVSADGSVRIFDLRDK-----EHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVIL 242 (337)
Q Consensus 169 ~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~ 242 (337)
...-+..+.+ +|+++++++..--+++|.+--. +.....+...+|...+..++|++ +...+++.+.||. +++|
T Consensus 228 q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~-wriw 305 (420)
T KOG2096|consen 228 QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGK-WRIW 305 (420)
T ss_pred cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCc-EEEe
Confidence 6677788889 7999999999999999987422 22333455567999999999999 9999999999999 9999
Q ss_pred ECCCC------CCCeEEe----ecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCcee
Q 038533 243 DIRSP------TLPVAEL----ERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEIN 312 (337)
Q Consensus 243 d~~~~------~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~ 312 (337)
|+.-. ...+++. ..-.+....++.+|.|+ .||.+. ...++++..+.++ ..+.....|...|.
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA~s~-gs~l~~~~se~g~------~~~~~e~~h~~~Is 377 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLAVSF-GSDLKVFASEDGK------DYPELEDIHSTTIS 377 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEEeec-CCceEEEEcccCc------cchhHHHhhcCcee
Confidence 97531 1112221 11123345899999998 666554 5579999998433 12334456899999
Q ss_pred EEEEccCCCceEEEEcCCcEEEEe
Q 038533 313 QLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 313 ~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
+++|+++|+++++++ |..++++.
T Consensus 378 ~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 378 SISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred eEEecCCCcEEeeec-ceeeeeec
Confidence 999999998665554 66676653
No 123
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.1e-27 Score=197.65 Aligned_cols=228 Identities=18% Similarity=0.233 Sum_probs=191.8
Q ss_pred cEEEEeC-C-eEEEEecCCCCcc----ceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCc--cchh
Q 038533 92 HLLASSG-D-FLRLWDVGDSSIE----PVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKG--VVET 163 (337)
Q Consensus 92 ~~l~~~~-~-~v~vw~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~ 163 (337)
++|.+|| | .|++|++.....+ ....++.|. +-|.+++... +++.|++++.|-+|++|+...+ -++.
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~Hs-----DWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~s 111 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHS-----DWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMS 111 (735)
T ss_pred ceEEecCCCceEEEeccccccCCcccchhhhhhhhH-----hHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHh
Confidence 4788887 6 9999999765422 466778887 8899998876 8899999999999999999877 4778
Q ss_pred hhhccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCC--------ceeeecCCCCCCCceEEEeecCCCcEEEEEE
Q 038533 164 QLIAHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEH--------STIIYESPQPDTPLLRLAWNKQDLRYMATIL 233 (337)
Q Consensus 164 ~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 233 (337)
++..|.+.|.++++- +..++++|+.|+.|.+||+.++.. ........++..++++++.++ ++..+++|+
T Consensus 112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGg 190 (735)
T KOG0308|consen 112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGG 190 (735)
T ss_pred hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC-cceEEEecC
Confidence 889999999999994 688999999999999999997732 111111225678999999998 888999999
Q ss_pred ecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeE
Q 038533 234 MDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQ 313 (337)
Q Consensus 234 ~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~ 313 (337)
.++. +++||.++ ...+..+++|...|..+..+++|. .+++++.||+|++||+. .. .....+..|...|++
T Consensus 191 tek~-lr~wDprt-~~kimkLrGHTdNVr~ll~~dDGt-~~ls~sSDgtIrlWdLg--qQ-----rCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 191 TEKD-LRLWDPRT-CKKIMKLRGHTDNVRVLLVNDDGT-RLLSASSDGTIRLWDLG--QQ-----RCLATYIVHKEGVWA 260 (735)
T ss_pred cccc-eEEecccc-ccceeeeeccccceEEEEEcCCCC-eEeecCCCceEEeeecc--cc-----ceeeeEEeccCceEE
Confidence 9998 99999999 555778889999999999999999 99999999999999999 32 224477789999999
Q ss_pred EEEccCCCceEEEEcCCcEEEEe
Q 038533 314 LQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 314 ~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
+.-+|+-..+++|+.||.|..=+
T Consensus 261 L~~~~sf~~vYsG~rd~~i~~Td 283 (735)
T KOG0308|consen 261 LQSSPSFTHVYSGGRDGNIYRTD 283 (735)
T ss_pred EeeCCCcceEEecCCCCcEEecc
Confidence 99999999999999999887543
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4e-26 Score=174.99 Aligned_cols=253 Identities=21% Similarity=0.317 Sum_probs=191.2
Q ss_pred CCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCC--CccceeeecCCCCCcccCCeeEEEeecC-CCC
Q 038533 66 SFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDS--SIEPVAVLNNSKSSEFCAPLTSFDWNEI-EPK 140 (337)
Q Consensus 66 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~ 140 (337)
..+|.+-|+++.|.+.|+ .+|+|+ | +|+|||.... ...+....+.|. +.|..+.|.++ -|+
T Consensus 9 ~s~h~DlihdVs~D~~GR---------RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~-----~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGR---------RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHD-----GSIWRVVWAHPEFGQ 74 (361)
T ss_pred ccCCcceeeeeeecccCc---------eeeeccCCCcEEEEeccCCCCceEEeeeEEecC-----CcEEEEEecCccccc
Confidence 368999999999999999 888887 6 9999997543 356667777887 99999999653 588
Q ss_pred eEEEeeCCCcEEEEeCCCc---------cchhhhhccCCceeEEEeCC---CcEEEEEcCCCeEEEEECCCCCCc-----
Q 038533 141 RIGTCSIDTTCTIWDIEKG---------VVETQLIAHDKEVYDICWGE---ARVFASVSADGSVRIFDLRDKEHS----- 203 (337)
Q Consensus 141 ~l~~~~~dg~i~v~d~~~~---------~~~~~~~~~~~~v~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~----- 203 (337)
.+|+++.|+++.||.-... ....++......|++++|.| |-.+++++.||.++||+.-.....
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 9999999999999975211 12334455677899999994 778999999999999987654211
Q ss_pred -ee----eecCCCCCCCceEEEeecC--CCcEEEEEEec-----CCEEEEEECCCCC---CCeEEeecccceeeEEEeCC
Q 038533 204 -TI----IYESPQPDTPLLRLAWNKQ--DLRYMATILMD-----SNKVVILDIRSPT---LPVAELERHRACVNAIAWAP 268 (337)
Q Consensus 204 -~~----~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d-----~~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~ 268 (337)
.. +.....+..+..|+.|+|. ...+|++|+.+ +. ++||...... ..+.++.+|..+|+.++|.|
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~-~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNK-VKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccc-eEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 11 1122235578899999973 24578887766 24 8888876544 23456789999999999999
Q ss_pred CCC---CeEEEEcCCCcEEEEeCCCCCCC---------CCC--CCC----ceeeeeCCCceeEEEEccCCCceEEEEcCC
Q 038533 269 QSR---RHICSVGDDSQAFIWELPLPPVA---------GPN--GID----PMSMYSAGSEINQLQWSPAQPDWLAIAFSN 330 (337)
Q Consensus 269 ~~~---~~l~~~~~dg~i~iw~~~~~~~~---------~~~--~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 330 (337)
+-. ++||+++.|| |+||.+. ... .+. ... ...+.+|.+.|..+.|+-.|..|.+++.||
T Consensus 234 n~Gr~y~~lAvA~kDg-v~I~~v~--~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG 310 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKDG-VRIFKVK--VARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG 310 (361)
T ss_pred ccCCceeeEEEeecCc-EEEEEEe--eccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc
Confidence 742 3799999999 9999998 211 110 111 113557999999999999999888999999
Q ss_pred cEEEEe
Q 038533 331 KMQLLK 336 (337)
Q Consensus 331 ~i~iw~ 336 (337)
.||+|+
T Consensus 311 ~VRLWk 316 (361)
T KOG2445|consen 311 CVRLWK 316 (361)
T ss_pred eeeehh
Confidence 999997
No 125
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.95 E-value=1.7e-26 Score=187.69 Aligned_cols=266 Identities=12% Similarity=0.186 Sum_probs=209.6
Q ss_pred CCceeEEEEe-cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-
Q 038533 21 PYPLYAMAVC-GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG- 98 (337)
Q Consensus 21 ~~~v~~~~~s-~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~- 98 (337)
+-.+.++.|+ .+.|++++. ++|..+++|.-+....++...... ..+.-.|++...... ++++|+
T Consensus 34 ~pg~~s~~w~~~n~lvvas~--~gdk~~~~~~K~g~~~~Vp~~~k~---~gd~~~Cv~~~s~S~---------y~~sgG~ 99 (673)
T KOG4378|consen 34 EPGDFSFNWQRRNFLVVASM--AGDKVMRIKEKDGKTPEVPRVRKL---TGDNAFCVACASQSL---------YEISGGQ 99 (673)
T ss_pred CCcceeeeccccceEEEeec--CCceeEEEecccCCCCccceeecc---ccchHHHHhhhhcce---------eeeccCc
Confidence 3449999999 676877775 458999998877665444432222 222334555444556 788877
Q ss_pred C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCC-ceeEEE
Q 038533 99 D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDK-EVYDIC 176 (337)
Q Consensus 99 ~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~-~v~~~~ 176 (337)
. .|+|||++.. .+.+.+++|+ ..|+++.++. ...+||+++..|.|.|..+.++.....+....+ .|.-+.
T Consensus 100 ~~~Vkiwdl~~k--l~hr~lkdh~-----stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 100 SGCVKIWDLRAK--LIHRFLKDHQ-----STVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR 171 (673)
T ss_pred CceeeehhhHHH--HHhhhccCCc-----ceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence 4 9999999966 6788899998 9999999997 889999999999999999999887777764433 456889
Q ss_pred eC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEe
Q 038533 177 WG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAEL 254 (337)
Q Consensus 177 ~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 254 (337)
|+ ...+|.+++.+|.|.+||+........... .|..+...++|+|.+..+|++.+.|.. |.+||.+. ......+
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicfspsne~l~vsVG~Dkk-i~~yD~~s-~~s~~~l 247 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE--AHSAPCRGICFSPSNEALLVSVGYDKK-INIYDIRS-QASTDRL 247 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCCCcccchhh--hccCCcCcceecCCccceEEEecccce-EEEeeccc-cccccee
Confidence 99 356788999999999999987765444333 488999999999999999999999998 99999997 4444445
Q ss_pred ecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCC
Q 038533 255 ERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQ 320 (337)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 320 (337)
. ...+...++|.++|. +|+.|+..|.|..||++ .... ...+...|...|++++|-|.-
T Consensus 248 ~-y~~Plstvaf~~~G~-~L~aG~s~G~~i~YD~R--~~k~----Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 T-YSHPLSTVAFSECGT-YLCAGNSKGELIAYDMR--STKA----PVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred e-ecCCcceeeecCCce-EEEeecCCceEEEEecc--cCCC----CceEeeecccceeEEEeeecc
Confidence 4 356899999999998 99999999999999999 5443 244777899999999998874
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=8.9e-26 Score=182.05 Aligned_cols=267 Identities=13% Similarity=0.141 Sum_probs=203.5
Q ss_pred CcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC--C-eEEEEecCCCCccceeeecC
Q 038533 43 YTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG--D-FLRLWDVGDSSIEPVAVLNN 119 (337)
Q Consensus 43 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~--~-~v~vw~~~~~~~~~~~~~~~ 119 (337)
+...+.+||+...+.....+......+ .++..- .+. +++++. . .+.+|.+....... ....
T Consensus 16 d~~~~~~~dl~TGt~~~~ykg~~~a~~----~sl~~l-~~~---------yllsaq~~rp~l~vw~i~k~~~~~-q~~v- 79 (476)
T KOG0646|consen 16 DPINCIVWDLRTGTSLLQYKGSYLAQA----ASLTAL-NNE---------YLLSAQLKRPLLHVWEILKKDQVV-QYIV- 79 (476)
T ss_pred CCcceeEEecCCCceeEEecCcccccc----hhhhhh-chh---------heeeecccCccccccccCchhhhh-hhcc-
Confidence 345689999988877666532210111 111111 113 555554 3 99999998763212 1111
Q ss_pred CCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECC
Q 038533 120 SKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLR 198 (337)
Q Consensus 120 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~ 198 (337)
..++|.+++-+| +|.+++.|+..|.|++|.+.+|..+..+.+|-..|+++.|+ ++.+|++|+.||.|.+|++.
T Consensus 80 -----~Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 80 -----LPGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred -----cccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 127899999998 99999999899999999999999999999999999999999 89999999999999999874
Q ss_pred CC------CCceeeecCCCCCCCceEEEeecC-CCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCC
Q 038533 199 DK------EHSTIIYESPQPDTPLLRLAWNKQ-DLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSR 271 (337)
Q Consensus 199 ~~------~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 271 (337)
.. .....+.....|.-+|+++...+. ...++++++.|.. +++||+.. +..+.++. ....+.+++..|-+.
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t-~k~wdlS~-g~LLlti~-fp~si~av~lDpae~ 230 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT-IKLWDLSL-GVLLLTIT-FPSSIKAVALDPAER 230 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCce-EEEEEecc-ceeeEEEe-cCCcceeEEEccccc
Confidence 32 123334444568889999988763 4568999999998 99999988 55666654 467899999999998
Q ss_pred CeEEEEcCCCcEEEEeCCCCCCC--C---------CCCCCceeeeeCCC--ceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 272 RHICSVGDDSQAFIWELPLPPVA--G---------PNGIDPMSMYSAGS--EINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 272 ~~l~~~~~dg~i~iw~~~~~~~~--~---------~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
.++.|+.+|.|.+.++. +.. + +.+.....+.+|.. .|++++.+-||..|++++.||++.||++
T Consensus 231 -~~yiGt~~G~I~~~~~~--~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 231 -VVYIGTEEGKIFQNLLF--KLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred -EEEecCCcceEEeeehh--cCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 99999999999999887 333 1 11233446678887 9999999999999999999999999986
No 127
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-25 Score=172.08 Aligned_cols=255 Identities=16% Similarity=0.287 Sum_probs=196.8
Q ss_pred eeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 18 HESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 18 ~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
-.|.+-|+++.|. |+++|+++. |++++||+.+...+........ ..|.+.|..+.|.+-.- ++.+|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSs----Dq~vkI~d~~~~s~~W~~Ts~W-rah~~Si~rV~WAhPEf-------GqvvA 77 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSS----DQTVKIWDSTSDSGTWSCTSSW-RAHDGSIWRVVWAHPEF-------GQVVA 77 (361)
T ss_pred cCCcceeeeeeecccCceeeeccC----CCcEEEEeccCCCCceEEeeeE-EecCCcEEEEEecCccc-------cceEE
Confidence 4567889999999 999999998 9999999998888877765555 68999999999965432 35999
Q ss_pred EeC-C-eEEEEecCCC-------CccceeeecCCCCCcccCCeeEEEeecC-CCCeEEEeeCCCcEEEEeCCCc------
Q 038533 96 SSG-D-FLRLWDVGDS-------SIEPVAVLNNSKSSEFCAPLTSFDWNEI-EPKRIGTCSIDTTCTIWDIEKG------ 159 (337)
Q Consensus 96 ~~~-~-~v~vw~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~~dg~i~v~d~~~~------ 159 (337)
+++ | ++.||.-... +.....++...+ ..|+++.|.|. -|-.+|+++.||.++||+.-..
T Consensus 78 ~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsr-----ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 78 TCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSR-----SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred EEecCCceeeeeecccccccccceeEEEEEeecCC-----cceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc
Confidence 998 7 9999986322 234456666666 89999999984 3568999999999999986542
Q ss_pred cchhhhh-------ccCCceeEEEeCC----CcEEEEEcCC-----CeEEEEECCCCC-CceeeecCCCCCCCceEEEee
Q 038533 160 VVETQLI-------AHDKEVYDICWGE----ARVFASVSAD-----GSVRIFDLRDKE-HSTIIYESPQPDTPLLRLAWN 222 (337)
Q Consensus 160 ~~~~~~~-------~~~~~v~~~~~~~----~~~l~~~~~d-----g~i~iwd~~~~~-~~~~~~~~~~~~~~i~~~~~~ 222 (337)
.....++ .+..+..|+.|++ ..+|+.|+.+ +.+.||...... .-..+.+.+.+..+|+.++|.
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 2333333 3556678899983 5577877766 478899876554 344445555789999999999
Q ss_pred cCCCc---EEEEEEecCCEEEEEECCCCC-------------------CCeEEeecccceeeEEEeCCCCCCeEEEEcCC
Q 038533 223 KQDLR---YMATILMDSNKVVILDIRSPT-------------------LPVAELERHRACVNAIAWAPQSRRHICSVGDD 280 (337)
Q Consensus 223 ~~~~~---~l~~~~~d~~~i~i~d~~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 280 (337)
|.-|+ .|++++.|| |+||.++... +.+..+..|.+.|..+.|+-.|. +|++.+.|
T Consensus 233 Pn~Gr~y~~lAvA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGt-iLsStGdD 309 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGT-ILSSTGDD 309 (361)
T ss_pred cccCCceeeEEEeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeee-EEeecCCC
Confidence 95443 688888887 9999987311 12345678999999999999999 99999999
Q ss_pred CcEEEEeCCCCC
Q 038533 281 SQAFIWELPLPP 292 (337)
Q Consensus 281 g~i~iw~~~~~~ 292 (337)
|.||+|...+..
T Consensus 310 G~VRLWkany~n 321 (361)
T KOG2445|consen 310 GCVRLWKANYNN 321 (361)
T ss_pred ceeeehhhhhhh
Confidence 999999988443
No 128
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.2e-26 Score=184.26 Aligned_cols=250 Identities=18% Similarity=0.225 Sum_probs=197.3
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCcc--ceee---ecCC-----CC-CcccCCeeEEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIE--PVAV---LNNS-----KS-SEFCAPLTSFD 133 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~--~~~~---~~~~-----~~-~~~~~~i~~~~ 133 (337)
..|.-+|.+++++|++. +..+++ + +|.-|++.++... .... ++.| .. ..|...+.+++
T Consensus 139 ~~H~~s~~~vals~d~~---------~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~a 209 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDK---------RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLA 209 (479)
T ss_pred ccccCcceEEEeecccc---------ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEE
Confidence 68999999999999999 888887 4 9999999877411 0000 1101 01 14448899999
Q ss_pred eecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCC
Q 038533 134 WNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQP 212 (337)
Q Consensus 134 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 212 (337)
.++ ++++|++|+.|..|.||+.++.+.++.+++|.+.|.+++|- ..+.+++++.|+.+++|++........++ +|
T Consensus 210 vS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly---GH 285 (479)
T KOG0299|consen 210 VSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY---GH 285 (479)
T ss_pred EcC-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh---CC
Confidence 999 99999999999999999999999999999999999999999 67789999999999999999887555544 56
Q ss_pred CCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCC
Q 038533 213 DTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPP 292 (337)
Q Consensus 213 ~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 292 (337)
...|..+.-.. .++.+-+|+.|.+ +++|++.. .....+.+|.+.+-|++|-.+. .+++|+.+|.|.+|++- +
T Consensus 286 qd~v~~IdaL~-reR~vtVGgrDrT-~rlwKi~e--esqlifrg~~~sidcv~~In~~--HfvsGSdnG~IaLWs~~--K 357 (479)
T KOG0299|consen 286 QDGVLGIDALS-RERCVTVGGRDRT-VRLWKIPE--ESQLIFRGGEGSIDCVAFINDE--HFVSGSDNGSIALWSLL--K 357 (479)
T ss_pred ccceeeechhc-ccceEEeccccce-eEEEeccc--cceeeeeCCCCCeeeEEEeccc--ceeeccCCceEEEeeec--c
Confidence 78899988775 6777777779998 99999954 3345677888899999998775 59999999999999998 3
Q ss_pred CCC----CC--CCCce-eeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 293 VAG----PN--GIDPM-SMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 293 ~~~----~~--~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
... +. +..+. ....+...|++++..|....+++++.+|.|++|.+
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI 409 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence 221 00 00000 00112348999999999988888899999999975
No 129
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.95 E-value=6.1e-26 Score=182.58 Aligned_cols=288 Identities=17% Similarity=0.203 Sum_probs=210.8
Q ss_pred CCCceeEEEEe----cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 20 SPYPLYAMAVC----GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 20 ~~~~v~~~~~s----~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
+..+|++++|+ .+++|+|.. .|.|-+|++..+....... .+-..|..+|.+|.|+|.+. .+++.
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK----~G~VG~Wn~~~~~~d~d~v-~~f~~hs~~Vs~l~F~P~n~-------s~i~s 252 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDK----GGQVGLWNFGTQEKDKDGV-YLFTPHSGPVSGLKFSPANT-------SQIYS 252 (498)
T ss_pred cccceEEEEecccCcceEEEEccC----CCcEEEEecCCCCCccCce-EEeccCCccccceEecCCCh-------hheee
Confidence 46899999999 478888887 9999999995322211110 11378999999999999876 23555
Q ss_pred EeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccc-hhhhhccCCcee
Q 038533 96 SSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVV-ETQLIAHDKEVY 173 (337)
Q Consensus 96 ~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~ 173 (337)
++.| +|++-|+++...+.+..+.... ..+.+++|+. +...++.+..=|...+||++++.. ...+.-|...|.
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~-----~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDN-----IWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccc-----eeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 5557 9999999998666665554333 6778899987 666677777777999999998764 556667888999
Q ss_pred EEEeC--CCcEEEEEcCCCeEEEEECCCCCCcee-eecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECC---CC
Q 038533 174 DICWG--EARVFASVSADGSVRIFDLRDKEHSTI-IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR---SP 247 (337)
Q Consensus 174 ~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~---~~ 247 (337)
+++++ ...+|++++.|++.+|||+|....... +.....|...|.++.|+|.++. |++.+.|.. |+|||.. ..
T Consensus 327 sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~-IRv~dss~~sa~ 404 (498)
T KOG4328|consen 327 SVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNE-IRVFDSSCISAK 404 (498)
T ss_pred eeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCc-eEEeeccccccc
Confidence 99999 478999999999999999997654432 3344468899999999995555 889999998 9999984 22
Q ss_pred CCCeEEeecccc------eeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeC-CCceeE-EEEccC
Q 038533 248 TLPVAELERHRA------CVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSA-GSEINQ-LQWSPA 319 (337)
Q Consensus 248 ~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~v~~-~~~~~~ 319 (337)
..+..++. |.. .....+|.|+.. ++++|..-..|-|+|-..+. ....+... ...|.+ ..|+|.
T Consensus 405 ~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~~q-------~v~el~~P~~~tI~~vn~~HP~ 475 (498)
T KOG4328|consen 405 DEPLGTIP-HNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNGGQ-------MVCELHDPESSTIPSVNEFHPM 475 (498)
T ss_pred CCccceee-ccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCCCE-------EeeeccCccccccccceeeccc
Confidence 34444443 322 345678999988 99999999999999988221 01111111 113333 479998
Q ss_pred CCceEEEE-cCCcEEEEe
Q 038533 320 QPDWLAIA-FSNKMQLLK 336 (337)
Q Consensus 320 ~~~l~~~~-~d~~i~iw~ 336 (337)
+..+++++ ..|.|.||-
T Consensus 476 ~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 476 RDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ccceeccCCccceEEEEe
Confidence 86577665 678898883
No 130
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.8e-26 Score=188.48 Aligned_cols=298 Identities=13% Similarity=0.166 Sum_probs=223.2
Q ss_pred ccCCccceeee-eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCc
Q 038533 8 SHLRSENSVTH-ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSS 84 (337)
Q Consensus 8 ~~~~~~~~~~~-~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 84 (337)
.|.+......| .|.+.|.|+... |.+||+|+. ||+|+||.+........ ....+.|.||+|+|...
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsd----DGtvriWEi~TgRcvr~------~~~d~~I~~vaw~P~~~- 454 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSD----DGTVRIWEIATGRCVRT------VQFDSEIRSVAWNPLSD- 454 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCC----CCcEEEEEeecceEEEE------EeecceeEEEEecCCCC-
Confidence 34554444444 468999999999 999999997 99999999886654333 35567899999999876
Q ss_pred ccCcCCccEEEEeCC-eEEEEecCCCC-----------------------------------ccceeeecCCCCCcccCC
Q 038533 85 RKSSSNRHLLASSGD-FLRLWDVGDSS-----------------------------------IEPVAVLNNSKSSEFCAP 128 (337)
Q Consensus 85 ~~~~~~~~~l~~~~~-~v~vw~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~ 128 (337)
..+||++-+ .+.|-+..-+. ..-++..-.|. ..
T Consensus 455 ------~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~-----k~ 523 (733)
T KOG0650|consen 455 ------LCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHP-----KS 523 (733)
T ss_pred ------ceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecC-----Cc
Confidence 124555444 44444422110 00011222233 78
Q ss_pred eeEEEeecCCCCeEEEeeC---CCcEEEEeCCCccchhhhhccCCceeEEEeCC-CcEEEEEcCCCeEEEEECCCCCCce
Q 038533 129 LTSFDWNEIEPKRIGTCSI---DTTCTIWDIEKGVVETQLIAHDKEVYDICWGE-ARVFASVSADGSVRIFDLRDKEHST 204 (337)
Q Consensus 129 i~~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 204 (337)
|..+.|+. .|.+|++..- ...|.|+++...+...-|....+.|.++.|+| ..+|++++ ...|++||+.......
T Consensus 524 i~~vtWHr-kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvK 601 (733)
T KOG0650|consen 524 IRQVTWHR-KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVK 601 (733)
T ss_pred cceeeeec-CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHH
Confidence 99999998 9999999864 35799999988777677766778899999995 44555555 4689999999876555
Q ss_pred eeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEE
Q 038533 205 IIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAF 284 (337)
Q Consensus 205 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 284 (337)
.+... ...|..++.+| .|..|+.++.|+. +..||+.-..++.+++.-|...+++++|++.-+ ++++|+.||.+.
T Consensus 602 kL~tg---~kwiS~msihp-~GDnli~gs~d~k-~~WfDldlsskPyk~lr~H~~avr~Va~H~ryP-Lfas~sdDgtv~ 675 (733)
T KOG0650|consen 602 KLLTG---SKWISSMSIHP-NGDNLILGSYDKK-MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYP-LFASGSDDGTVI 675 (733)
T ss_pred HHhcC---CeeeeeeeecC-CCCeEEEecCCCe-eEEEEcccCcchhHHhhhhhhhhhhhhhccccc-eeeeecCCCcEE
Confidence 54443 46789999999 9999999999998 999999987889999999999999999999999 999999999999
Q ss_pred EEeCCCCC-CC-CCCCCCceeeeeCCCc----eeEEEEccCCCceEEEEcCCcEEEE
Q 038533 285 IWELPLPP-VA-GPNGIDPMSMYSAGSE----INQLQWSPAQPDWLAIAFSNKMQLL 335 (337)
Q Consensus 285 iw~~~~~~-~~-~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d~~i~iw 335 (337)
|+.-..-+ +. .|.-.....+.+|... |.++.|+|..++|++++.||+|++|
T Consensus 676 Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 676 VFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred EEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 98654211 11 1111112356677655 9999999999999999999999998
No 131
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=1.8e-26 Score=181.38 Aligned_cols=248 Identities=21% Similarity=0.326 Sum_probs=183.6
Q ss_pred eeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCc------------ceecCCCcCCCCCCCCeEEEecCCC
Q 038533 17 THESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESL------------SIKTHPSLSFDHPYPPTKLMFDPNS 82 (337)
Q Consensus 17 ~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~------------~~~~~~~~~~~~~~~i~~i~~~~~~ 82 (337)
...|.+.+.-+.-+ ++-.++++. .+.|.|+||++...-. ......+. .+|...=++|+|||-.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~asw--se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~-~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASW--SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTF-NGHKGEGYGLDWSPIK 223 (440)
T ss_pred ccccccccceeeecccCCcceeeee--cccCcEEEEEchhhhhhhcCccccccccccCceEEe-cccCccceeeeccccc
Confidence 34455555555555 433334443 2499999999763221 11110111 5677888999999955
Q ss_pred CcccCcCCccEEEEeCC--eEEEEecCCCCccc-eeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCc
Q 038533 83 SSRKSSSNRHLLASSGD--FLRLWDVGDSSIEP-VAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKG 159 (337)
Q Consensus 83 ~~~~~~~~~~~l~~~~~--~v~vw~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 159 (337)
. -.|++|.- .|++|...++..+. ...+.+|+ ..|-.++|||.....|++|+.||+|+|||++.+
T Consensus 224 ~--------g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~-----~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~ 290 (440)
T KOG0302|consen 224 T--------GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT-----KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG 290 (440)
T ss_pred c--------cccccCccccceEeeeeccCceeecCccccccc-----cchhhhccCCccCceEEeeecCceEEEEEecCC
Confidence 4 35666652 99999999876422 23456677 999999999988899999999999999999988
Q ss_pred c---chhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEec
Q 038533 160 V---VETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMD 235 (337)
Q Consensus 160 ~---~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 235 (337)
. ++.+ ++|.+.|+.+.|+ ...+|++|+.||+++|||+|+.+....+.....|+.+|+++.|+|.+...|++++.|
T Consensus 291 ~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D 369 (440)
T KOG0302|consen 291 PKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGED 369 (440)
T ss_pred CccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCC
Confidence 4 3333 7899999999999 555999999999999999998876555555556899999999999888899999999
Q ss_pred CCEEEEEECCCCCC---------------CeEEeecc--cceeeEEEeCCCCCCeEEEEcCCCc
Q 038533 236 SNKVVILDIRSPTL---------------PVAELERH--RACVNAIAWAPQSRRHICSVGDDSQ 282 (337)
Q Consensus 236 ~~~i~i~d~~~~~~---------------~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~ 282 (337)
.. |.+||+..... |-+.+-.| ...+..+.|+++-+.++++.+.||-
T Consensus 370 ~Q-itiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf 432 (440)
T KOG0302|consen 370 NQ-ITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF 432 (440)
T ss_pred Cc-EEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence 98 99999864211 11122234 3468889999998889999998884
No 132
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.6e-27 Score=183.86 Aligned_cols=242 Identities=15% Similarity=0.281 Sum_probs=195.9
Q ss_pred ceeeee-CCCceeEEEEe-cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCc
Q 038533 14 NSVTHE-SPYPLYAMAVC-GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNR 91 (337)
Q Consensus 14 ~~~~~~-~~~~v~~~~~s-~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 91 (337)
.+.++. |.+.|..|++. +..+-+|. |++|+.|.++.. ... ...-...+..|.-+..+.
T Consensus 101 ~~~~f~AH~G~V~Gi~v~~~~~~tvgd-----DKtvK~wk~~~~--p~~-----tilg~s~~~gIdh~~~~~-------- 160 (433)
T KOG0268|consen 101 CIRTFKAHEGLVRGICVTQTSFFTVGD-----DKTVKQWKIDGP--PLH-----TILGKSVYLGIDHHRKNS-------- 160 (433)
T ss_pred hhheeecccCceeeEEecccceEEecC-----CcceeeeeccCC--cce-----eeeccccccccccccccc--------
Confidence 344454 57899999999 55555554 999999998873 222 134456677787777777
Q ss_pred cEEEEeCCeEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCc
Q 038533 92 HLLASSGDFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKE 171 (337)
Q Consensus 92 ~~l~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 171 (337)
.+|+||..|.|||.... .++..+.... ..|.++.|+|.....|++|+.|+.|.+||++++.+++.+. ....
T Consensus 161 -~FaTcGe~i~IWD~~R~--~Pv~smswG~-----Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mR 231 (433)
T KOG0268|consen 161 -VFATCGEQIDIWDEQRD--NPVSSMSWGA-----DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMR 231 (433)
T ss_pred -cccccCceeeecccccC--CccceeecCC-----CceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eecc
Confidence 99999999999999887 5677776655 7899999999888999999999999999999999888765 3456
Q ss_pred eeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCC
Q 038533 172 VYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLP 250 (337)
Q Consensus 172 v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~ 250 (337)
-+.++|+ +.-.|++|++|..++.||++..+.+...... |.+.+.+++|+| .|+.+++|+.|.+ |+||..+....
T Consensus 232 TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d--hvsAV~dVdfsp-tG~EfvsgsyDks-IRIf~~~~~~S- 306 (433)
T KOG0268|consen 232 TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD--HVSAVMDVDFSP-TGQEFVSGSYDKS-IRIFPVNHGHS- 306 (433)
T ss_pred ccceecCccccceeeccccccceehhhhhhcccchhhcc--cceeEEEeccCC-Ccchhccccccce-EEEeecCCCcc-
Confidence 7889999 5677899999999999999998876666655 789999999999 9999999999999 99999986331
Q ss_pred eEEe-ecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCC
Q 038533 251 VAEL-ERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL 290 (337)
Q Consensus 251 ~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 290 (337)
-..+ ...-..|.++.|+-|.+ ++++||.|+.|++|....
T Consensus 307 RdiYhtkRMq~V~~Vk~S~Dsk-yi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 307 RDIYHTKRMQHVFCVKYSMDSK-YIISGSDDGNVRLWKAKA 346 (433)
T ss_pred hhhhhHhhhheeeEEEEecccc-EEEecCCCcceeeeecch
Confidence 1111 11234799999999999 999999999999999874
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=2.3e-25 Score=191.42 Aligned_cols=288 Identities=15% Similarity=0.205 Sum_probs=226.4
Q ss_pred ccceeeeeC-CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCC-CCCeEEEecCCCCcccC
Q 038533 12 SENSVTHES-PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHP-YPPTKLMFDPNSSSRKS 87 (337)
Q Consensus 12 ~~~~~~~~~-~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~~~ 87 (337)
.+.+++++. ...|+++.=+ =+.+|+|.. +|+|.|+++..+..... +.|. ++|+.++|..||.
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~s------Fk~d~g~VtslSFrtDG~---- 257 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMS------FKQDWGRVTSLSFRTDGN---- 257 (910)
T ss_pred CcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEE------EEccccceeEEEeccCCC----
Confidence 567888877 7889999998 789999996 99999999887765544 4664 9999999999998
Q ss_pred cCCccEEEEeCC--eEEEEecCCCCccceeeec-CCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc----
Q 038533 88 SSNRHLLASSGD--FLRLWDVGDSSIEPVAVLN-NSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV---- 160 (337)
Q Consensus 88 ~~~~~~l~~~~~--~v~vw~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---- 160 (337)
.++|+|+. .+.+||++..+ ....+. .|. +.|....|-| ....+++++.|+.+++|=..++.
T Consensus 258 ----p~las~~~~G~m~~wDLe~kk--l~~v~~nah~-----~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg~pR 325 (910)
T KOG1539|consen 258 ----PLLASGRSNGDMAFWDLEKKK--LINVTRNAHY-----GSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDGVPR 325 (910)
T ss_pred ----eeEEeccCCceEEEEEcCCCe--eeeeeecccc-----CCcccceecC-CCceEeeccCCCceeEEEeeCCCCcch
Confidence 57887774 89999999883 443333 565 7788888887 77888888888888777332110
Q ss_pred chhhhhccC-----------------------------------------------------------------------
Q 038533 161 VETQLIAHD----------------------------------------------------------------------- 169 (337)
Q Consensus 161 ~~~~~~~~~----------------------------------------------------------------------- 169 (337)
.++.-.+|.
T Consensus 326 ~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~ 405 (910)
T KOG1539|consen 326 LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFEN 405 (910)
T ss_pred heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeeccc
Confidence 000000010
Q ss_pred -------------------------------------------CceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCcee
Q 038533 170 -------------------------------------------KEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTI 205 (337)
Q Consensus 170 -------------------------------------------~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 205 (337)
..+++++.+ -|+..+.|...|.|.+|++.++-....
T Consensus 406 ~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~s 485 (910)
T KOG1539|consen 406 AREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKS 485 (910)
T ss_pred chhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecc
Confidence 125666666 588888899999999999998876666
Q ss_pred eecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEE
Q 038533 206 IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFI 285 (337)
Q Consensus 206 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 285 (337)
....+.|.++|+.++... .++.+++++.+|- +.+||..+ +.++..+. -...+..+..+.... +++.+..|-.|++
T Consensus 486 f~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gi-lkfw~f~~-k~l~~~l~-l~~~~~~iv~hr~s~-l~a~~~ddf~I~v 560 (910)
T KOG1539|consen 486 FGDSPAHKGEVTGLAVDG-TNRLLVSAGADGI-LKFWDFKK-KVLKKSLR-LGSSITGIVYHRVSD-LLAIALDDFSIRV 560 (910)
T ss_pred cccCccccCceeEEEecC-CCceEEEccCcce-EEEEecCC-cceeeeec-cCCCcceeeeeehhh-hhhhhcCceeEEE
Confidence 655667899999999987 8889999999999 99999987 55666665 345788888888887 9999999999999
Q ss_pred EeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 286 WELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 286 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
+|+. +. .....+.+|...|++++|||||++|++++.|++|++|||
T Consensus 561 vD~~--t~-----kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 561 VDVV--TR-----KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred EEch--hh-----hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 9998 41 123477789999999999999999999999999999996
No 134
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=7.1e-25 Score=178.62 Aligned_cols=280 Identities=13% Similarity=0.161 Sum_probs=214.8
Q ss_pred CCceeEEEEe----cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 21 PYPLYAMAVC----GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 21 ~~~v~~~~~s----~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
...|.|++|+ |.+|+.-.. +.+..+.+|+|+.+...-.. ...++.|....|+|.++ +++++
T Consensus 154 ~~GV~~vaFsk~~~G~~l~~vD~--s~~h~lSVWdWqk~~~~~~v-----k~sne~v~~a~FHPtd~--------nliit 218 (626)
T KOG2106|consen 154 DRGVTCVAFSKINGGSLLCAVDD--SNPHMLSVWDWQKKAKLGPV-----KTSNEVVFLATFHPTDP--------NLIIT 218 (626)
T ss_pred cccceeeeecccCCCceEEEecC--CCccccchhhchhhhccCcc-----eeccceEEEEEeccCCC--------cEEEE
Confidence 5679999999 667666542 34778999999977655543 45677899999999988 79999
Q ss_pred eCC-eEEEEecCCCCcc-ceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeE
Q 038533 97 SGD-FLRLWDVGDSSIE-PVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 97 ~~~-~v~vw~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
++. .+.+|+.+++.+. ....++.+. . ..|.|++|.+ + .-+++|.++|.|.||+..+.+..+....|++.|.+
T Consensus 219 ~Gk~H~~Fw~~~~~~l~k~~~~fek~e---k-k~Vl~v~F~e-n-gdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~ 292 (626)
T KOG2106|consen 219 CGKGHLYFWTLRGGSLVKRQGIFEKRE---K-KFVLCVTFLE-N-GDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFS 292 (626)
T ss_pred eCCceEEEEEccCCceEEEeecccccc---c-eEEEEEEEcC-C-CCEEeecCCceEEEEeCCCceEEeEeeecCCceEE
Confidence 997 9999999988532 223333332 2 6799999987 5 45889999999999999888877776799999999
Q ss_pred EEeCCCcEEEEEcCCCeEEEEECCCCCC-----------ceeeec--------------------------CCCCCCCce
Q 038533 175 ICWGEARVFASVSADGSVRIFDLRDKEH-----------STIIYE--------------------------SPQPDTPLL 217 (337)
Q Consensus 175 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~--------------------------~~~~~~~i~ 217 (337)
++...+..|++|+.|+.|..||-.-.+. ++.+.+ ...|.....
T Consensus 293 L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw 372 (626)
T KOG2106|consen 293 LCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELW 372 (626)
T ss_pred EEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccccee
Confidence 9999334566699999999999321110 111111 013455777
Q ss_pred EEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCC
Q 038533 218 RLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPN 297 (337)
Q Consensus 218 ~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 297 (337)
.++.+| +.+.+++++.|+. +++|+ . .+++.+.. ...++.++.|+|.| .+|.|+..|...+.|.+ +
T Consensus 373 gla~hp-s~~q~~T~gqdk~-v~lW~--~-~k~~wt~~-~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e--~----- 437 (626)
T KOG2106|consen 373 GLATHP-SKNQLLTCGQDKH-VRLWN--D-HKLEWTKI-IEDPAECADFHPSG--VVAVGTATGRWFVLDTE--T----- 437 (626)
T ss_pred eEEcCC-ChhheeeccCcce-EEEcc--C-CceeEEEE-ecCceeEeeccCcc--eEEEeeccceEEEEecc--c-----
Confidence 888888 8889999999998 99999 2 44454443 35688999999998 79999999999999999 4
Q ss_pred CCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 298 GIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 298 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
...........+++.++|+|+|.+|+.++.|+.|+||+|
T Consensus 438 -~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~V 476 (626)
T KOG2106|consen 438 -QDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRV 476 (626)
T ss_pred -ceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEE
Confidence 224444445889999999999999999999999999975
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.3e-25 Score=191.62 Aligned_cols=274 Identities=16% Similarity=0.189 Sum_probs=209.9
Q ss_pred eeeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccE
Q 038533 16 VTHESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHL 93 (337)
Q Consensus 16 ~~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 93 (337)
.++.|...-+.++|. |.+|.+++. ||.|++|+.......... + ..+...|.+++-.. . .
T Consensus 8 lRyaht~G~t~i~~d~~gefi~tcgs----dg~ir~~~~~sd~e~P~t---i-~~~g~~v~~ia~~s--~---------~ 68 (933)
T KOG1274|consen 8 LRYAHTGGLTLICYDPDGEFICTCGS----DGDIRKWKTNSDEEEPET---I-DISGELVSSIACYS--N---------H 68 (933)
T ss_pred chhhccCceEEEEEcCCCCEEEEecC----CCceEEeecCCcccCCch---h-hccCceeEEEeecc--c---------c
Confidence 346777779999999 889999887 999999987766433332 1 22777788777543 3 5
Q ss_pred EEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCc
Q 038533 94 LASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKE 171 (337)
Q Consensus 94 l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~ 171 (337)
|++|+ + +|.+|.+..++. -..+...+ -++.+++|+. +|+++|.|+.|-.|++.++.+......+.+|.++
T Consensus 69 f~~~s~~~tv~~y~fps~~~--~~iL~Rft-----lp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap 140 (933)
T KOG1274|consen 69 FLTGSEQNTVLRYKFPSGEE--DTILARFT-----LPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP 140 (933)
T ss_pred eEEeeccceEEEeeCCCCCc--cceeeeee-----ccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence 55555 5 999999998843 33333333 7899999997 9999999999999999999999999999999999
Q ss_pred eeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCC-----CCCCceEEEeecCCCcEEEEEEecCCEEEEEECC
Q 038533 172 VYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQ-----PDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR 245 (337)
Q Consensus 172 v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~ 245 (337)
|.++.|+ .+++||+.+-||.|++||+.++.....+..... ....+..++|+| ++..|++.+.|+. |++|+..
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~-Vkvy~r~ 218 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNT-VKVYSRK 218 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCe-EEEEccC
Confidence 9999999 699999999999999999998875444332211 135677899999 7777777777888 9999988
Q ss_pred CCCCCeEEee--cccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCce
Q 038533 246 SPTLPVAELE--RHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDW 323 (337)
Q Consensus 246 ~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 323 (337)
. ..+...+. .+...+..+.|+|.|+ |||+++.||.|.|||.+ +..+ ......|.+++|.|+.+.+
T Consensus 219 ~-we~~f~Lr~~~~ss~~~~~~wsPnG~-YiAAs~~~g~I~vWnv~--t~~~---------~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 219 G-WELQFKLRDKLSSSKFSDLQWSPNGK-YIAASTLDGQILVWNVD--THER---------HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred C-ceeheeecccccccceEEEEEcCCCc-EEeeeccCCcEEEEecc--cchh---------ccccceeEEEecCCCCCee
Confidence 7 44445443 2334589999999999 99999999999999999 3111 2234679999999998755
Q ss_pred EEEEcCCc
Q 038533 324 LAIAFSNK 331 (337)
Q Consensus 324 ~~~~~d~~ 331 (337)
-....-|.
T Consensus 286 t~~~~~g~ 293 (933)
T KOG1274|consen 286 TLITALGT 293 (933)
T ss_pred EEEeeccc
Confidence 44444443
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=4.8e-25 Score=185.44 Aligned_cols=280 Identities=15% Similarity=0.154 Sum_probs=219.2
Q ss_pred CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC
Q 038533 21 PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG 98 (337)
Q Consensus 21 ~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~ 98 (337)
+.+|.|+||+ .+.||++-. +|.|.||++...-.... .+..+-...|.+++|++.++ ++-++.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt----~g~IEiwN~~~~w~~~~---vi~g~~drsIE~L~W~e~~R---------LFS~g~ 88 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRT----DGNIEIWNLSNNWFLEP---VIHGPEDRSIESLAWAEGGR---------LFSSGL 88 (691)
T ss_pred ccceEEEEEeccCCceeeecc----CCcEEEEccCCCceeeE---EEecCCCCceeeEEEccCCe---------EEeecC
Confidence 7899999999 788999887 99999999876332221 33345567899999998877 777777
Q ss_pred C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchh--hhhccCCceeEE
Q 038533 99 D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVET--QLIAHDKEVYDI 175 (337)
Q Consensus 99 ~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~--~~~~~~~~v~~~ 175 (337)
+ .|.-||+.+. +....+.... ++|++++.+| .+..++.|..||.+..++...++... .+....++|.++
T Consensus 89 sg~i~EwDl~~l--k~~~~~d~~g-----g~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl 160 (691)
T KOG2048|consen 89 SGSITEWDLHTL--KQKYNIDSNG-----GAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL 160 (691)
T ss_pred CceEEEEecccC--ceeEEecCCC-----cceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE
Confidence 7 9999999999 5666666555 8999999999 88999999999988888877665432 334456899999
Q ss_pred EeC-CCcEEEEEcCCCeEEEEECCCCCCceeeec-----CCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCC
Q 038533 176 CWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE-----SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTL 249 (337)
Q Consensus 176 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~ 249 (337)
.|+ ++..+++|+.||.|++||...+........ ......-++++.|- ....+++|...|. |.+||... +.
T Consensus 161 sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~-V~FWd~~~-gT 236 (691)
T KOG2048|consen 161 SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGT-VTFWDSIF-GT 236 (691)
T ss_pred EecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCce-EEEEcccC-cc
Confidence 999 677899999999999999998875542211 11123446777776 4678889998998 99999998 67
Q ss_pred CeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcC
Q 038533 250 PVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFS 329 (337)
Q Consensus 250 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 329 (337)
+++.+..|...|.+++..+++. ++++++.|+.|.-|... .... +.........|...|.+++..++ .+++++.|
T Consensus 237 LiqS~~~h~adVl~Lav~~~~d-~vfsaGvd~~ii~~~~~--~~~~-~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d 310 (691)
T KOG2048|consen 237 LIQSHSCHDADVLALAVADNED-RVFSAGVDPKIIQYSLT--TNKS-EWVINSRRDLHAHDVRSMAVIEN--ALISGGRD 310 (691)
T ss_pred hhhhhhhhhcceeEEEEcCCCC-eEEEccCCCceEEEEec--CCcc-ceeeeccccCCcccceeeeeecc--eEEeccee
Confidence 7889999999999999999988 99999999999998887 3221 01111233457788999999888 78889999
Q ss_pred CcEEE
Q 038533 330 NKMQL 334 (337)
Q Consensus 330 ~~i~i 334 (337)
..+.+
T Consensus 311 ~~l~i 315 (691)
T KOG2048|consen 311 FTLAI 315 (691)
T ss_pred eEEEE
Confidence 88765
No 137
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=3.7e-24 Score=178.20 Aligned_cols=263 Identities=13% Similarity=0.179 Sum_probs=182.7
Q ss_pred ceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCC
Q 038533 32 QRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDS 109 (337)
Q Consensus 32 ~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~ 109 (337)
+.+++++. |+.+.+|+......... ..+...+.+++|+|++. .++++++ + .|++||..++
T Consensus 2 ~~~~s~~~----d~~v~~~d~~t~~~~~~------~~~~~~~~~l~~~~dg~--------~l~~~~~~~~~v~~~d~~~~ 63 (300)
T TIGR03866 2 KAYVSNEK----DNTISVIDTATLEVTRT------FPVGQRPRGITLSKDGK--------LLYVCASDSDTIQVIDLATG 63 (300)
T ss_pred cEEEEecC----CCEEEEEECCCCceEEE------EECCCCCCceEECCCCC--------EEEEEECCCCeEEEEECCCC
Confidence 56777776 99999999865432222 22334477899999998 2345655 4 9999999987
Q ss_pred CccceeeecCCCCCcccCCeeEEEeecCCCCeEE-EeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEc
Q 038533 110 SIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIG-TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVS 187 (337)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 187 (337)
+....+..+ ..+..++|+| +++.++ +++.++.|++||+++.+.+..+.. ...+.+++|+ ++++++++.
T Consensus 64 --~~~~~~~~~------~~~~~~~~~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~ 133 (300)
T TIGR03866 64 --EVIGTLPSG------PDPELFALHP-NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTS 133 (300)
T ss_pred --cEEEeccCC------CCccEEEECC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEe
Confidence 444445443 2346789998 777665 455689999999998776666542 3346889999 788888888
Q ss_pred CCC-eEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEE-ecCCEEEEEECCCCCCCeEEeeccc-------
Q 038533 188 ADG-SVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATIL-MDSNKVVILDIRSPTLPVAELERHR------- 258 (337)
Q Consensus 188 ~dg-~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~~i~i~d~~~~~~~~~~~~~~~------- 258 (337)
.++ .+.+||.++.+....... .....+++|+| ++.+|++++ .++. |++||+++ .+.+..+..+.
T Consensus 134 ~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~s~-dg~~l~~~~~~~~~-v~i~d~~~-~~~~~~~~~~~~~~~~~~ 206 (300)
T TIGR03866 134 ETTNMAHFIDTKTYEIVDNVLV----DQRPRFAEFTA-DGKELWVSSEIGGT-VSVIDVAT-RKVIKKITFEIPGVHPEA 206 (300)
T ss_pred cCCCeEEEEeCCCCeEEEEEEc----CCCccEEEECC-CCCEEEEEcCCCCE-EEEEEcCc-ceeeeeeeeccccccccc
Confidence 765 567789887764333322 23457799999 888876555 4666 99999987 44444443221
Q ss_pred ceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEE-cCCcEEEEeC
Q 038533 259 ACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIA-FSNKMQLLKV 337 (337)
Q Consensus 259 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~l 337 (337)
.....++|+|+++.++++.+.++.+.+||+. +.. ......+...+.+++|+|+++.|++++ .++.|++|++
T Consensus 207 ~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~--~~~------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 207 VQPVGIKLTKDGKTAFVALGPANRVAVVDAK--TYE------VLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred CCccceEECCCCCEEEEEcCCCCeEEEEECC--CCc------EEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 1235688999999334555667789999998 311 222223456799999999999888764 6899999985
No 138
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=8.8e-26 Score=190.28 Aligned_cols=235 Identities=14% Similarity=0.186 Sum_probs=199.3
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeE-EEeecCCCCeEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTS-FDWNEIEPKRIG 143 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~ 143 (337)
.+|...|..++..+.. .+++++ | ++++|+-...+......+.+|. +-|.. +++-+.++..++
T Consensus 11 ~gH~~DVr~v~~~~~~----------~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~-----g~i~~~i~y~e~~~~~l~ 75 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV----------CIISGSRDGTVKVWAKKGKQYLETHAFEGPK-----GFIANSICYAESDKGRLV 75 (745)
T ss_pred ccCccchheeEecCCe----------EEeecCCCCceeeeeccCcccccceecccCc-----ceeeccceeccccCcceE
Confidence 7899999999987665 566666 6 9999998887665556677766 66666 777654666799
Q ss_pred EeeCCCcEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeec
Q 038533 144 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNK 223 (337)
Q Consensus 144 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 223 (337)
+|+.|.+|.+|...+..++..+++|...|.++.......+++|+.|.++++|-...... ...+|...|+++..-|
T Consensus 76 ~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~-----~l~gH~asVWAv~~l~ 150 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVY-----SLQGHTASVWAVASLP 150 (745)
T ss_pred eecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhc-----ccCCcchheeeeeecC
Confidence 99999999999999999999999999999999987333499999999999998866542 2456899999999988
Q ss_pred CCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCcee
Q 038533 224 QDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMS 303 (337)
Q Consensus 224 ~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 303 (337)
.+ .+++|+.|.. |++|.- ++.++++.+|...|+.+++-|++. +++++.||.|++|++. ++....
T Consensus 151 -e~-~~vTgsaDKt-IklWk~---~~~l~tf~gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~--------ge~l~~ 214 (745)
T KOG0301|consen 151 -EN-TYVTGSADKT-IKLWKG---GTLLKTFSGHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLD--------GEVLLE 214 (745)
T ss_pred -CC-cEEeccCcce-eeeccC---CchhhhhccchhheeeeEEecCCC--eEeecCCceEEEEecc--------Cceeee
Confidence 44 8899999999 999976 457889999999999999999875 9999999999999997 455778
Q ss_pred eeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 304 MYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 304 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
+.+|...|.+++..+++..++++++|++++||+.
T Consensus 215 ~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 215 MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK 248 (745)
T ss_pred eeccceEEEEEEecCCCCeEEEecCCceEEEeec
Confidence 9999999999997777778999999999999973
No 139
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.6e-25 Score=168.98 Aligned_cols=288 Identities=16% Similarity=0.262 Sum_probs=208.3
Q ss_pred CCccceeeeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccC
Q 038533 10 LRSENSVTHESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKS 87 (337)
Q Consensus 10 ~~~~~~~~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 87 (337)
.|.+...++.+.. -.|+.|+ |.+||+|.. ||.|.|||+....-.-. ..+|..+|.+++||++|+
T Consensus 13 ~PEel~~tld~~~-a~~~~Fs~~G~~lAvGc~----nG~vvI~D~~T~~iar~-----lsaH~~pi~sl~WS~dgr---- 78 (405)
T KOG1273|consen 13 YPEELTHTLDNPL-AECCQFSRWGDYLAVGCA----NGRVVIYDFDTFRIARM-----LSAHVRPITSLCWSRDGR---- 78 (405)
T ss_pred ChHhhceeccCCc-cceEEeccCcceeeeecc----CCcEEEEEccccchhhh-----hhccccceeEEEecCCCC----
Confidence 3445556666666 8899999 999999998 99999999987652222 379999999999999999
Q ss_pred cCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhh
Q 038533 88 SSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQL 165 (337)
Q Consensus 88 ~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 165 (337)
+|.+++ | .|.+||+..+. +++.+.-. ++|+...|+|.+.+.+++.-.+..-.+-++..++....-
T Consensus 79 -----~LltsS~D~si~lwDl~~gs--~l~rirf~------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 79 -----KLLTSSRDWSIKLWDLLKGS--PLKRIRFD------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP 145 (405)
T ss_pred -----EeeeecCCceeEEEeccCCC--ceeEEEcc------CccceeeeccccCCeEEEEEecCCcEEEEecCCceeecc
Confidence 888877 6 99999999994 55555543 799999999977777777766666666666543211100
Q ss_pred hccCCc----eeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEE
Q 038533 166 IAHDKE----VYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVV 240 (337)
Q Consensus 166 ~~~~~~----v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~ 240 (337)
....+. ..+..|. .|+++++|...|.+.++|..+.++....... ....|..+.++. .++.|+.-+.|.. |+
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rit--s~~~IK~I~~s~-~g~~liiNtsDRv-IR 221 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRIT--SVQAIKQIIVSR-KGRFLIINTSDRV-IR 221 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeec--hheeeeEEEEec-cCcEEEEecCCce-EE
Confidence 111111 1222455 6999999999999999999999876655443 136788899988 9999999999998 99
Q ss_pred EEECCCCC------C--CeEEeec--ccceeeEEEeCCCCCCeEEEEc-CCCcEEEEeCCCCCCCCCCCCCceeeeeCC-
Q 038533 241 ILDIRSPT------L--PVAELER--HRACVNAIAWAPQSRRHICSVG-DDSQAFIWELPLPPVAGPNGIDPMSMYSAG- 308 (337)
Q Consensus 241 i~d~~~~~------~--~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~- 308 (337)
.|+++.-. . +.+.++. ...+=.+++|+.+|. ++++++ .-..++||....++ ....+.+..
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge-Yv~a~s~~aHaLYIWE~~~Gs-------LVKILhG~kg 293 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE-YVCAGSARAHALYIWEKSIGS-------LVKILHGTKG 293 (405)
T ss_pred EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc-EEEeccccceeEEEEecCCcc-------eeeeecCCch
Confidence 99987311 1 1111111 122346788999999 665555 45679999998544 233555555
Q ss_pred CceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 309 SEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 309 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
....++.|+|-.+.+++. ..|.++||.+
T Consensus 294 E~l~DV~whp~rp~i~si-~sg~v~iw~~ 321 (405)
T KOG1273|consen 294 EELLDVNWHPVRPIIASI-ASGVVYIWAV 321 (405)
T ss_pred hheeecccccceeeeeec-cCCceEEEEe
Confidence 568899999998766655 7899999964
No 140
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1e-25 Score=198.85 Aligned_cols=255 Identities=16% Similarity=0.221 Sum_probs=200.7
Q ss_pred cceee-eeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCC--C------------cceecCCCcCCCCCCCCeE
Q 038533 13 ENSVT-HESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPE--S------------LSIKTHPSLSFDHPYPPTK 75 (337)
Q Consensus 13 ~~~~~-~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~--~------------~~~~~~~~~~~~~~~~i~~ 75 (337)
+.+.+ ..|.+.|.|+.|+ |++||+|+. |..|.||..... . +....... ..+|...|..
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD----D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~-l~~H~~DV~D 134 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSD----DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSI-LRGHDSDVLD 134 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccC----cceEEEeeecccCCcccccccccccccceeeEEEE-EecCCCccce
Confidence 33443 4578999999999 999999996 999999998831 0 01111112 3689999999
Q ss_pred EEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEE
Q 038533 76 LMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTI 153 (337)
Q Consensus 76 i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 153 (337)
++|+|++. +||+++ | +|.|||..+. +.+..+.+|. +.|..+.|.| -|++||+-+.|++|++
T Consensus 135 v~Wsp~~~---------~lvS~s~DnsViiwn~~tF--~~~~vl~~H~-----s~VKGvs~DP-~Gky~ASqsdDrtikv 197 (942)
T KOG0973|consen 135 VNWSPDDS---------LLVSVSLDNSVIIWNAKTF--ELLKVLRGHQ-----SLVKGVSWDP-IGKYFASQSDDRTLKV 197 (942)
T ss_pred eccCCCcc---------EEEEecccceEEEEccccc--eeeeeeeccc-----ccccceEECC-ccCeeeeecCCceEEE
Confidence 99999998 999999 6 9999999998 8999999999 9999999999 9999999999999999
Q ss_pred EeCCCccchhhhhcc------CCceeEEEeC-CCcEEEEEcC----CCeEEEEECCCCCCceeeecCCCCCCCceEEEee
Q 038533 154 WDIEKGVVETQLIAH------DKEVYDICWG-EARVFASVSA----DGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWN 222 (337)
Q Consensus 154 ~d~~~~~~~~~~~~~------~~~v~~~~~~-~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~ 222 (337)
|++.+....+.+.++ ...+.-+.|+ +|++|++... -.++.|.+-.+.+....+. +|..++.++.|+
T Consensus 198 wrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~Lv---GH~~p~evvrFn 274 (942)
T KOG0973|consen 198 WRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLV---GHSAPVEVVRFN 274 (942)
T ss_pred EEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeee---cCCCceEEEEeC
Confidence 997775555554432 2347788999 7999988643 3457888876666333332 578899999999
Q ss_pred cC----C--------Cc----EEEEEEecCCEEEEEECCCCCCCeEE-eecccceeeEEEeCCCCCCeEEEEcCCCcEEE
Q 038533 223 KQ----D--------LR----YMATILMDSNKVVILDIRSPTLPVAE-LERHRACVNAIAWAPQSRRHICSVGDDSQAFI 285 (337)
Q Consensus 223 ~~----~--------~~----~l~~~~~d~~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 285 (337)
|. . .+ .+|+|+.|+. |.||....+ +|+.. .+-....|..++|+|||- .|+++|.||+|.+
T Consensus 275 P~lfe~~~~ng~~~~~~~~y~i~AvgSqDrS-lSVW~T~~~-RPl~vi~~lf~~SI~DmsWspdG~-~LfacS~DGtV~~ 351 (942)
T KOG0973|consen 275 PKLFERNNKNGTSTQPNCYYCIAAVGSQDRS-LSVWNTALP-RPLFVIHNLFNKSIVDMSWSPDGF-SLFACSLDGTVAL 351 (942)
T ss_pred hHHhccccccCCccCCCcceEEEEEecCCcc-EEEEecCCC-CchhhhhhhhcCceeeeeEcCCCC-eEEEEecCCeEEE
Confidence 83 1 11 6888999999 999999774 44433 334467899999999998 9999999999999
Q ss_pred EeCCCCCCCC
Q 038533 286 WELPLPPVAG 295 (337)
Q Consensus 286 w~~~~~~~~~ 295 (337)
..++...++.
T Consensus 352 i~Fee~ElG~ 361 (942)
T KOG0973|consen 352 IHFEEKELGV 361 (942)
T ss_pred EEcchHHhCc
Confidence 9998555543
No 141
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=7.6e-26 Score=172.66 Aligned_cols=206 Identities=15% Similarity=0.250 Sum_probs=165.1
Q ss_pred CCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc------------ch---hhhhccCCceeEEEeC--CCcEEEEEcCC
Q 038533 127 APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV------------VE---TQLIAHDKEVYDICWG--EARVFASVSAD 189 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~------------~~---~~~~~~~~~v~~~~~~--~~~~l~~~~~d 189 (337)
+.|.++...+..+.++++|+.||.|.+||++... ++ ..-.+|...|.++.|- +...|.+++.|
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFD 123 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFD 123 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccccc
Confidence 8899999999899999999999999999997543 10 0112577889999998 67899999999
Q ss_pred CeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCC-cEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCC
Q 038533 190 GSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDL-RYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAP 268 (337)
Q Consensus 190 g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 268 (337)
.++++||..+.+....+. .++.|++-+++|... ..|++++.++.+|++.|+.+ +..-+++.+|...|.++.|+|
T Consensus 124 htlKVWDtnTlQ~a~~F~----me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-Gs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAVDFK----MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-GSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ceEEEeecccceeeEEee----cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-CcceeeeccccCceEEEEecc
Confidence 999999999988554443 347889999988433 45555555555599999998 667899999999999999999
Q ss_pred CCCCeEEEEcCCCcEEEEeCCCCCC-----CCCCCCCce---eeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 269 QSRRHICSVGDDSQAFIWELPLPPV-----AGPNGIDPM---SMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 269 ~~~~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
..+++|++|+.||.|++||++.... .+-++..+. .-..|.+.|..++|..++.++++++.|..+++|+.
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 9999999999999999999983210 011111121 23468899999999999999999999999999984
No 142
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.94 E-value=1.5e-25 Score=187.50 Aligned_cols=140 Identities=15% Similarity=0.263 Sum_probs=111.8
Q ss_pred CCeEEEEECCCCCCce-eeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCC------CCeEEeeccccee
Q 038533 189 DGSVRIFDLRDKEHST-IIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT------LPVAELERHRACV 261 (337)
Q Consensus 189 dg~i~iwd~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~------~~~~~~~~~~~~v 261 (337)
.|.|-||+++...... -....-.....|+.+.|+|.+...|++++.|+. |++|.+...+ .+...+..|...|
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~-i~lWr~~a~gl~e~~~tPe~~lt~h~eKI 680 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQ-INLWRLTANGLPENEMTPEKILTIHGEKI 680 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCce-EEEEEeccCCCCcccCCcceeeecccceE
Confidence 3556666655433211 111111234678999999999999999999998 9999987643 4567788999999
Q ss_pred eEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 262 NAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
+++.|+|-...+|+++++|-+|++||+. . +.....+.+|.+.|.+++|||+|+.+++.+-||+|++++
T Consensus 681 ~slRfHPLAadvLa~asyd~Ti~lWDl~--~-----~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 681 TSLRFHPLAADVLAVASYDSTIELWDLA--N-----AKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE 748 (1012)
T ss_pred EEEEecchhhhHhhhhhccceeeeeehh--h-----hhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence 9999999877799999999999999999 3 223557889999999999999999999999999999986
No 143
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.94 E-value=8.5e-25 Score=166.46 Aligned_cols=257 Identities=21% Similarity=0.279 Sum_probs=197.9
Q ss_pred eCCCceeEEEEe---cceEEEeeeeccCc---ceEEEEEecCCCcc-----eecCCCcCCCCCCCCeEEEecCCCCcccC
Q 038533 19 ESPYPLYAMAVC---GQRIAVGSFIEDYT---NRVDVVSFEPESLS-----IKTHPSLSFDHPYPPTKLMFDPNSSSRKS 87 (337)
Q Consensus 19 ~~~~~v~~~~~s---~~~la~g~~~~~~d---~~i~i~~~~~~~~~-----~~~~~~~~~~~~~~i~~i~~~~~~~~~~~ 87 (337)
.+.+.|..++-+ .+.|+++.+..+.. -.+.||.+..+.+. ++....+...+-+.|.|+.|.|++.
T Consensus 61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~---- 136 (370)
T KOG1007|consen 61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD---- 136 (370)
T ss_pred cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC----
Confidence 347889999888 67777776533333 45789998866554 3332234345667899999999998
Q ss_pred cCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeec-CCCCeEEEeeCCCcEEEEeCCCccchhhh
Q 038533 88 SSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNE-IEPKRIGTCSIDTTCTIWDIEKGVVETQL 165 (337)
Q Consensus 88 ~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 165 (337)
-+++-.+ .|.+|++..... .+..+......+.....++-+|+| .+++.+++.+ |+++..||+++.+....+
T Consensus 137 -----klasm~dn~i~l~~l~ess~-~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI 209 (370)
T KOG1007|consen 137 -----KLASMDDNNIVLWSLDESSK-IVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSI 209 (370)
T ss_pred -----eeEEeccCceEEEEcccCcc-hheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcch
Confidence 8888777 999999998742 244444333333346788899999 5777777764 799999999988776665
Q ss_pred h-ccCCceeEEEeCC--CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEE
Q 038533 166 I-AHDKEVYDICWGE--ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVIL 242 (337)
Q Consensus 166 ~-~~~~~v~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~ 242 (337)
. +|...|..+.|+| ..+|++|+.||.|++||.|..+.+.... +.|.-.+.++.|+|....++++++.|.. |.+|
T Consensus 210 ~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el--~~HsHWvW~VRfn~~hdqLiLs~~SDs~-V~Ls 286 (370)
T KOG1007|consen 210 EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL--PGHSHWVWAVRFNPEHDQLILSGGSDSA-VNLS 286 (370)
T ss_pred hhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc--CCCceEEEEEEecCccceEEEecCCCce-eEEE
Confidence 4 7888999999994 5689999999999999999987655444 3577899999999988899999999998 9998
Q ss_pred ECCCCC----------------------------CCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 243 DIRSPT----------------------------LPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 243 d~~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
....-. ..+.++..|...|.+++|+.-.++++|+-++||++.|=.+.
T Consensus 287 ca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 287 CASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 643210 12346677999999999999999899999999999988776
No 144
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=2.1e-24 Score=182.02 Aligned_cols=295 Identities=18% Similarity=0.230 Sum_probs=219.4
Q ss_pred eCCCceeEEEEe-----cceEEEeeeeccCcceEEEEEecCCCc-----------------------ceec---CCCcCC
Q 038533 19 ESPYPLYAMAVC-----GQRIAVGSFIEDYTNRVDVVSFEPESL-----------------------SIKT---HPSLSF 67 (337)
Q Consensus 19 ~~~~~v~~~~~s-----~~~la~g~~~~~~d~~i~i~~~~~~~~-----------------------~~~~---~~~~~~ 67 (337)
.|.+-|.+++|. .-+||+++. |..|+||.+..... .+.. ...+..
T Consensus 189 GH~DWIrsl~f~~~~~~~~~laS~SQ----D~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 189 GHTDWIRSLAFARLGGDDLLLASSSQ----DRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred ccchhhhhhhhhccCCCcEEEEecCC----ceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 468889999999 246778887 99999999764431 0110 002236
Q ss_pred CCCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCC--ccce---eeecCCCCCcccCCeeEEEeecCCCCe
Q 038533 68 DHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSS--IEPV---AVLNNSKSSEFCAPLTSFDWNEIEPKR 141 (337)
Q Consensus 68 ~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~--~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~ 141 (337)
+|++-|+++.|+|.+. .+|.++.| ++.+|...+.. .... -.+.+.. .......|+| +++.
T Consensus 265 GHeDWV~sv~W~p~~~--------~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a-----~GF~g~lw~~-n~~~ 330 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGL--------DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSA-----GGFWGGLWSP-NSNV 330 (764)
T ss_pred CcccceEEEEEccchh--------hheecccCcceEEEecCCccceEEEEEEeecccccc-----cceeeEEEcC-CCCE
Confidence 9999999999999996 36666668 99999887652 1111 2222222 5688999999 8899
Q ss_pred EEEeeCCCcEEEEeCCCc---cchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCC---------------
Q 038533 142 IGTCSIDTTCTIWDIEKG---VVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEH--------------- 202 (337)
Q Consensus 142 l~~~~~dg~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~--------------- 202 (337)
+++-+..|..++|..+.. .....+.+|.+.|.+++|+ .|.+|++++.|.+-|+|-.-..+.
T Consensus 331 ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl 410 (764)
T KOG1063|consen 331 IIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL 410 (764)
T ss_pred EEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccc
Confidence 999999999999983332 2445667999999999999 699999999998877764320000
Q ss_pred -------------------ceeeec-------------------------------------------------------
Q 038533 203 -------------------STIIYE------------------------------------------------------- 208 (337)
Q Consensus 203 -------------------~~~~~~------------------------------------------------------- 208 (337)
....+.
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 000000
Q ss_pred ------------------------------CCCCCCCceEEEeecCCCcEEEEEEecCC----EEEEEECCCCCCCeEEe
Q 038533 209 ------------------------------SPQPDTPLLRLAWNKQDLRYMATILMDSN----KVVILDIRSPTLPVAEL 254 (337)
Q Consensus 209 ------------------------------~~~~~~~i~~~~~~~~~~~~l~~~~~d~~----~i~i~d~~~~~~~~~~~ 254 (337)
..+|...|++++.+| +++++++++.... .|++|+..+ -..++.+
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~-W~~~~~L 568 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTAN-WLQVQEL 568 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccc-hhhhhee
Confidence 003566789999999 9999999886543 499999988 4446689
Q ss_pred ecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEE
Q 038533 255 ERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQL 334 (337)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 334 (337)
.+|.-.|+.++|+|+++ +|++.+.|+++.+|... +..... ..-.....|..-|.++.|+|++.++++++.|.+|+|
T Consensus 569 ~~HsLTVT~l~FSpdg~-~LLsvsRDRt~sl~~~~--~~~~~e-~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkV 644 (764)
T KOG1063|consen 569 EGHSLTVTRLAFSPDGR-YLLSVSRDRTVSLYEVQ--EDIKDE-FRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKV 644 (764)
T ss_pred cccceEEEEEEECCCCc-EEEEeecCceEEeeeee--cccchh-hhhccccccceEEEEcccCcccceeEEecCCceEEE
Confidence 99999999999999999 99999999999999986 322211 111136678999999999999999999999999999
Q ss_pred EeC
Q 038533 335 LKV 337 (337)
Q Consensus 335 w~l 337 (337)
|.+
T Consensus 645 W~~ 647 (764)
T KOG1063|consen 645 WEE 647 (764)
T ss_pred Eec
Confidence 974
No 145
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=5.9e-27 Score=198.19 Aligned_cols=231 Identities=21% Similarity=0.333 Sum_probs=197.3
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT 144 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 144 (337)
..|...+.++..-...+ .+++|+. .+.+|.+... ..+..+.+|. .+|.++.|++ ...+|++
T Consensus 25 ~~hsaav~~lk~~~s~r---------~~~~Gg~~~k~~L~~i~kp--~~i~S~~~he-----spIeSl~f~~-~E~Llaa 87 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSR---------SLVTGGEDEKVNLWAIGKP--NAITSLTGHE-----SPIESLTFDT-SERLLAA 87 (825)
T ss_pred hhhhhhhceeeeeccce---------eeccCCCceeeccccccCC--chhheeeccC-----CcceeeecCc-chhhhcc
Confidence 46888899998866666 8899885 8889999877 5666788998 9999999998 8899999
Q ss_pred eeCCCcEEEEeCCCccchhhhhccCCceeEEEeCC-CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeec
Q 038533 145 CSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGE-ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNK 223 (337)
Q Consensus 145 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 223 (337)
|+.+|+|++||++..+.++++.+|...+.++.|+| +.+++.|+.|+.+++||.+...+... +.. |...+..+.|+|
T Consensus 88 gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~-~~s--~~~vv~~l~lsP 164 (825)
T KOG0267|consen 88 GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHT-YKS--HTRVVDVLRLSP 164 (825)
T ss_pred cccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceee-ecC--CcceeEEEeecC
Confidence 99999999999999999999999999999999995 88899999999999999997775443 333 678899999999
Q ss_pred CCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCcee
Q 038533 224 QDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMS 303 (337)
Q Consensus 224 ~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~ 303 (337)
+|++++.+++|.. +++||+.. ++.+..|..|.+.+..+.|+|..- ++++|+.|+++++||++ ++.. ...
T Consensus 165 -~Gr~v~~g~ed~t-vki~d~~a-gk~~~ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv~f~dle--tfe~-----I~s 233 (825)
T KOG0267|consen 165 -DGRWVASGGEDNT-VKIWDLTA-GKLSKEFKSHEGKVQSLEFHPLEV-LLAPGSSDRTVRFWDLE--TFEV-----ISS 233 (825)
T ss_pred -CCceeeccCCcce-eeeecccc-cccccccccccccccccccCchhh-hhccCCCCceeeeeccc--eeEE-----eec
Confidence 9999999999998 99999987 778889999999999999999887 99999999999999999 4221 112
Q ss_pred eeeCCCceeEEEEccCCCceEEEEc
Q 038533 304 MYSAGSEINQLQWSPAQPDWLAIAF 328 (337)
Q Consensus 304 ~~~~~~~v~~~~~~~~~~~l~~~~~ 328 (337)
.......|.+++|+|++..++++..
T Consensus 234 ~~~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 234 GKPETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred cCCccCCceeeeecCCceeeecCch
Confidence 2223567999999999976665543
No 146
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=3.2e-23 Score=169.07 Aligned_cols=274 Identities=12% Similarity=0.142 Sum_probs=205.7
Q ss_pred CCceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe
Q 038533 21 PYPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS 97 (337)
Q Consensus 21 ~~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~ 97 (337)
+..|...+|+ .+++++.+ .+.+.+|.+......... ..++......|.|++|.+++. .+..-
T Consensus 200 ne~v~~a~FHPtd~nliit~G-----k~H~~Fw~~~~~~l~k~~-~~fek~ekk~Vl~v~F~engd---------viTgD 264 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPNLIITCG-----KGHLYFWTLRGGSLVKRQ-GIFEKREKKFVLCVTFLENGD---------VITGD 264 (626)
T ss_pred cceEEEEEeccCCCcEEEEeC-----CceEEEEEccCCceEEEe-eccccccceEEEEEEEcCCCC---------EEeec
Confidence 5678899999 77888888 899999977655432221 122223347799999999998 76666
Q ss_pred CC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc-----------ch---
Q 038533 98 GD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV-----------VE--- 162 (337)
Q Consensus 98 ~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-----------~~--- 162 (337)
++ .|.||+..+. +..+....|. +.|.++.... ++. |++|+.|..|..||-.-.+ .+
T Consensus 265 S~G~i~Iw~~~~~--~~~k~~~aH~-----ggv~~L~~lr-~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 265 SGGNILIWSKGTN--RISKQVHAHD-----GGVFSLCMLR-DGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTV 335 (626)
T ss_pred CCceEEEEeCCCc--eEEeEeeecC-----CceEEEEEec-Ccc-EeecCccceEEeccccccccccccCchhcCCeeEE
Confidence 66 9999999777 4444445777 9999999986 665 5559999999999832110 00
Q ss_pred --------------------------hhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCC
Q 038533 163 --------------------------TQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTP 215 (337)
Q Consensus 163 --------------------------~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 215 (337)
....+|......++.+ ..+++++++.|+.+++|+ ..+..-... -..+
T Consensus 336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~----~~d~ 409 (626)
T KOG2106|consen 336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI----IEDP 409 (626)
T ss_pred ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE----ecCc
Confidence 0112466677788888 578999999999999999 333222222 2478
Q ss_pred ceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCC
Q 038533 216 LLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAG 295 (337)
Q Consensus 216 i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 295 (337)
+.|+.|+| .+ .++.|...|. ..+.|.++ ...+..... ..++++++|+|+|. +||.|+.|+.|+||.+. ....
T Consensus 410 ~~~~~fhp-sg-~va~Gt~~G~-w~V~d~e~-~~lv~~~~d-~~~ls~v~ysp~G~-~lAvgs~d~~iyiy~Vs--~~g~ 481 (626)
T KOG2106|consen 410 AECADFHP-SG-VVAVGTATGR-WFVLDTET-QDLVTIHTD-NEQLSVVRYSPDGA-FLAVGSHDNHIYIYRVS--ANGR 481 (626)
T ss_pred eeEeeccC-cc-eEEEeeccce-EEEEeccc-ceeEEEEec-CCceEEEEEcCCCC-EEEEecCCCeEEEEEEC--CCCc
Confidence 99999999 77 9999999998 99999998 555555444 78999999999999 99999999999999998 3222
Q ss_pred CCCCCce-eeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 296 PNGIDPM-SMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 296 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
... .-.-+..+|+.+.||+|++++.+-+.|-.|..|.
T Consensus 482 ----~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 482 ----KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred ----EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 111 2233458999999999999999999998888883
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.94 E-value=2e-24 Score=175.74 Aligned_cols=263 Identities=13% Similarity=0.163 Sum_probs=196.1
Q ss_pred cceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE-eC-C-eEEEEecCCC--Cccceeeec
Q 038533 44 TNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS-SG-D-FLRLWDVGDS--SIEPVAVLN 118 (337)
Q Consensus 44 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~-~~-~-~v~vw~~~~~--~~~~~~~~~ 118 (337)
...++|||+......-.... ...+..+.++.|+..+. +++. .+ | .+++|.-... +...+..+.
T Consensus 11 gd~~kl~D~s~~~~~~~~~~---~t~~pg~~s~~w~~~n~---------lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~ 78 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVH---QTAEPGDFSFNWQRRNF---------LVVASMAGDKVMRIKEKDGKTPEVPRVRKLT 78 (673)
T ss_pred CCceEEeecccccCcccccc---CCCCCcceeeeccccce---------EEEeecCCceeEEEecccCCCCccceeeccc
Confidence 57899999876654433200 12223489999988764 3333 22 5 8888875443 222333333
Q ss_pred CCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEEC
Q 038533 119 NSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDL 197 (337)
Q Consensus 119 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~ 197 (337)
+ ..-.|++... ...++++|+..+.|+|||++...+.+.++.|...|+++.++ .+.++++++..|.|.+..+
T Consensus 79 g-------d~~~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 79 G-------DNAFCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred c-------chHHHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 3 2334555544 45799999999999999999777778889999999999999 7899999999999999999
Q ss_pred CCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEE
Q 038533 198 RDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSV 277 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 277 (337)
.++.....+... ....+.-+.|+|....+|.+++.+|. |.+||+........-...|..+...|+|+|.++.+|++.
T Consensus 151 ~t~~~tt~f~~~--sgqsvRll~ys~skr~lL~~asd~G~-VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV 227 (673)
T KOG4378|consen 151 KTKQKTTTFTID--SGQSVRLLRYSPSKRFLLSIASDKGA-VTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV 227 (673)
T ss_pred ccCccccceecC--CCCeEEEeecccccceeeEeeccCCe-EEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe
Confidence 988765555433 23456789999955666777777777 999999874443444578999999999999998899999
Q ss_pred cCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 278 GDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 278 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
+.|.+|.+||..... ......-..+...++|.++|.+|+++...|.|..|||
T Consensus 228 G~Dkki~~yD~~s~~--------s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 228 GYDKKINIYDIRSQA--------STDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred cccceEEEeeccccc--------ccceeeecCCcceeeecCCceEEEeecCCceEEEEec
Confidence 999999999999322 1212223457899999999999999999999999986
No 148
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=4.3e-24 Score=172.05 Aligned_cols=250 Identities=18% Similarity=0.273 Sum_probs=188.1
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCC--ccceeeecCCCCCcccCCeeEEEeecCCCCeE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSS--IEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRI 142 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 142 (337)
.-+.++|++++|+|... ..++|+|.. .|-+||+.+.+ ..-+..+..|. .+|.++.|+|.+...+
T Consensus 183 kv~~~Rit~l~fHPt~~-------~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs-----~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTEN-------RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHS-----GPVSGLKFSPANTSQI 250 (498)
T ss_pred EecccceEEEEecccCc-------ceEEEEccCCCcEEEEecCCCCCccCceEEeccCC-----ccccceEecCCChhhe
Confidence 35778999999999764 136777763 99999996332 24455667777 9999999999888999
Q ss_pred EEeeCCCcEEEEeCCCccchhhhhc--cCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEE
Q 038533 143 GTCSIDTTCTIWDIEKGVVETQLIA--HDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRL 219 (337)
Q Consensus 143 ~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~ 219 (337)
++.+.||+|++-|++.......+.. ....+.++.|+ +...++.+..=|...+||+|+.......... |+..|.++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l--h~kKI~sv 328 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL--HKKKITSV 328 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh--hhccccee
Confidence 9999999999999988764333332 45567788888 6667777777779999999998864444444 66799999
Q ss_pred EeecCCCcEEEEEEecCCEEEEEECCCCC--C-CeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCC
Q 038533 220 AWNKQDLRYMATILMDSNKVVILDIRSPT--L-PVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGP 296 (337)
Q Consensus 220 ~~~~~~~~~l~~~~~d~~~i~i~d~~~~~--~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~ 296 (337)
+++|....+|++++.|+. .+|||+|... . |+-....|...|.+..|||.+. -|+|.+.|..|+|||.. -...
T Consensus 329 ~~NP~~p~~laT~s~D~T-~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g-tl~TT~~D~~IRv~dss--~~sa- 403 (498)
T KOG4328|consen 329 ALNPVCPWFLATASLDQT-AKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG-TLLTTCQDNEIRVFDSS--CISA- 403 (498)
T ss_pred ecCCCCchheeecccCcc-eeeeehhhhcCCCCcceecccccceeeeeEEcCCCC-ceEeeccCCceEEeecc--cccc-
Confidence 999988999999999999 9999999643 1 2334456999999999999999 69999999999999995 2111
Q ss_pred CCCCceeeeeCCC------ceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 297 NGIDPMSMYSAGS------EINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 297 ~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
...+.....|.. .....+|.|+...++.+..-..|-|++
T Consensus 404 -~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 404 -KDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred -cCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 112333333432 245668999987666666655566554
No 149
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=183.67 Aligned_cols=248 Identities=22% Similarity=0.361 Sum_probs=206.5
Q ss_pred eeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEE
Q 038533 17 THESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLL 94 (337)
Q Consensus 17 ~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l 94 (337)
++.....+.+++.+ +++||+|.. -|.++||+++.-...... ..|+..|.|+.|+.... ...+|
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr----~GnlrVy~Lq~l~~~~~~-----eAHesEilcLeyS~p~~------~~kLL 519 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDR----GGNLRVYDLQELEYTCFM-----EAHESEILCLEYSFPVL------TNKLL 519 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCc----cCceEEEEehhhhhhhhe-----ecccceeEEEeecCchh------hhHhh
Confidence 44556789999999 999999997 999999999866554443 78999999999985432 12499
Q ss_pred EEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCC--CeEEEeeCCCcEEEEeCCCccchhhhh----
Q 038533 95 ASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEP--KRIGTCSIDTTCTIWDIEKGVVETQLI---- 166 (337)
Q Consensus 95 ~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~v~d~~~~~~~~~~~---- 166 (337)
|+++ | .|.|||+... ..++.++.+|. ..|+++.|.. ++ ..+++++.|..|.+--.+.......+.
T Consensus 520 ASasrdRlIHV~Dv~rn-y~l~qtld~HS-----ssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~ 592 (1080)
T KOG1408|consen 520 ASASRDRLIHVYDVKRN-YDLVQTLDGHS-----SSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQ 592 (1080)
T ss_pred hhccCCceEEEEecccc-cchhhhhcccc-----cceeEEEEee-cCCceEEEeccCchhhheehhccccCceecccccc
Confidence 9999 5 9999999765 46888999998 9999999987 55 678999999877653332111111121
Q ss_pred -ccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEEC
Q 038533 167 -AHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI 244 (337)
Q Consensus 167 -~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~ 244 (337)
.....+++++.. ..+++++++.|..|+|||+.+++..+.+.....|++....+...| .+.|+++.+.|.+ +.++|.
T Consensus 593 t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdkt-l~~~Df 670 (1080)
T KOG1408|consen 593 TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKT-LCFVDF 670 (1080)
T ss_pred ccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCc-eEEEEe
Confidence 123568899998 588999999999999999999998888888878889999999999 9999999999999 999999
Q ss_pred CCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCC
Q 038533 245 RSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL 290 (337)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 290 (337)
.+ ++++..+.+|...|+.+.|.+|.+ .|++.+.||.|.||.+..
T Consensus 671 ~s-gEcvA~m~GHsE~VTG~kF~nDCk-HlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 671 VS-GECVAQMTGHSEAVTGVKFLNDCK-HLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cc-chhhhhhcCcchheeeeeecccch-hheeecCCceEEEEECch
Confidence 98 778999999999999999999999 899999999999999973
No 150
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.8e-23 Score=181.66 Aligned_cols=241 Identities=20% Similarity=0.318 Sum_probs=191.0
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT 144 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 144 (337)
..|...-+.|+|.|++. +|.+++ | .|++|+.....-++. .+..+. ..|.+++- ..++|++
T Consensus 10 yaht~G~t~i~~d~~ge---------fi~tcgsdg~ir~~~~~sd~e~P~-ti~~~g-----~~v~~ia~---~s~~f~~ 71 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGE---------FICTCGSDGDIRKWKTNSDEEEPE-TIDISG-----ELVSSIAC---YSNHFLT 71 (933)
T ss_pred hhccCceEEEEEcCCCC---------EEEEecCCCceEEeecCCcccCCc-hhhccC-----ceeEEEee---cccceEE
Confidence 57888999999999998 777766 6 999999876631222 222233 67888876 5569999
Q ss_pred eeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeec
Q 038533 145 CSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNK 223 (337)
Q Consensus 145 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 223 (337)
|+.+++|.+|.+..++.-..+....-++.+++++ +|++++.|+.|-.|++.++........+. +|+.+|.++.|+|
T Consensus 72 ~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr---gh~apVl~l~~~p 148 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR---GHDAPVLQLSYDP 148 (933)
T ss_pred eeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec---ccCCceeeeeEcC
Confidence 9999999999998887665566667789999999 99999999999999999998877544433 4789999999999
Q ss_pred CCCcEEEEEEecCCEEEEEECCCCCCCeEEeec--------ccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCC
Q 038533 224 QDLRYMATILMDSNKVVILDIRSPTLPVAELER--------HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAG 295 (337)
Q Consensus 224 ~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 295 (337)
.+++||+.+.||. |++||+.+ +....++.+ ....+..++|+|++. .|+..+.|+.|++|+.. ....
T Consensus 149 -~~~fLAvss~dG~-v~iw~~~~-~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g-~la~~~~d~~Vkvy~r~--~we~ 222 (933)
T KOG1274|consen 149 -KGNFLAVSSCDGK-VQIWDLQD-GILSKTLTGVDKDNEFILSRICTRLAWHPKGG-TLAVPPVDNTVKVYSRK--GWEL 222 (933)
T ss_pred -CCCEEEEEecCce-EEEEEccc-chhhhhcccCCccccccccceeeeeeecCCCC-eEEeeccCCeEEEEccC--Ccee
Confidence 9999999999999 99999987 433433321 134678899999987 78888889999999998 3221
Q ss_pred CCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 296 PNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 296 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
...+....+...+..++|+|.|++|++++.||.|.|||+
T Consensus 223 ---~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 223 ---QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred ---heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 011222234555999999999999999999999999985
No 151
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2e-23 Score=161.10 Aligned_cols=248 Identities=22% Similarity=0.279 Sum_probs=175.9
Q ss_pred CCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEE
Q 038533 66 SFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIG 143 (337)
Q Consensus 66 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 143 (337)
+.+|.+.|++++|+.||+ .||+++ | .|++|++++-..+.-+.+...- +. +..+.+.|.|.....++
T Consensus 82 LKgH~~~vt~~~FsSdGK---------~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~-dhpT~V~FapDc~s~vv 149 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGK---------KLATISGDRSIRLWDVRDFENKEHRCIRQNV--EY-DHPTRVVFAPDCKSVVV 149 (420)
T ss_pred hhccCCceeeeEEcCCCc---------eeEEEeCCceEEEEecchhhhhhhhHhhccc--cC-CCceEEEECCCcceEEE
Confidence 479999999999999999 888887 5 9999999875322222221111 11 35678999994455666
Q ss_pred EeeCCCcEEEEeCCCccc---hh---------hhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCC
Q 038533 144 TCSIDTTCTIWDIEKGVV---ET---------QLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESP 210 (337)
Q Consensus 144 ~~~~dg~i~v~d~~~~~~---~~---------~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 210 (337)
+.-...++++|.+...+. .. --+.|.-.+..+-.. .+.++++++.|..|.+||++ ++....+...
T Consensus 150 ~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn- 227 (420)
T KOG2096|consen 150 SVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN- 227 (420)
T ss_pred EEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc-
Confidence 666777899998754321 10 112355566666666 68899999999999999999 5544444332
Q ss_pred CCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCC-------CCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcE
Q 038533 211 QPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT-------LPVAELERHRACVNAIAWAPQSRRHICSVGDDSQA 283 (337)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 283 (337)
...-+..+.+| +|+++++++.... |++|.+--.+ ..+..+.+|...|..++|+|+.. .+++.+.||++
T Consensus 228 --q~~n~~aavSP-~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-r~vtvSkDG~w 302 (420)
T KOG2096|consen 228 --QSSNYDAAVSP-DGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-RAVTVSKDGKW 302 (420)
T ss_pred --cccccceeeCC-CCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-eeEEEecCCcE
Confidence 35567788999 9999999999988 9999864211 23567889999999999999999 99999999999
Q ss_pred EEEeCCCCCCCCCCCCCceeee-------eCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 284 FIWELPLPPVAGPNGIDPMSMY-------SAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 284 ~iw~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
+|||++..--. ++++..+. ...+....++.+|.|. +++.+....++++.
T Consensus 303 riwdtdVrY~~---~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~-~lA~s~gs~l~~~~ 358 (420)
T KOG2096|consen 303 RIWDTDVRYEA---GQDPKILKEGSAPLHAAGSEPVRLELSPSGD-SLAVSFGSDLKVFA 358 (420)
T ss_pred EEeeccceEec---CCCchHhhcCCcchhhcCCCceEEEeCCCCc-EEEeecCCceEEEE
Confidence 99999732111 12222211 2233445899999995 66666667777663
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.8e-25 Score=197.18 Aligned_cols=256 Identities=20% Similarity=0.275 Sum_probs=204.2
Q ss_pred cceeeeeCCCceeEEEEe--cc----eEEEeeeeccCcceEEEEEecCC--CcceecCCCcCCCCCCCCeEEEecCCCCc
Q 038533 13 ENSVTHESPYPLYAMAVC--GQ----RIAVGSFIEDYTNRVDVVSFEPE--SLSIKTHPSLSFDHPYPPTKLMFDPNSSS 84 (337)
Q Consensus 13 ~~~~~~~~~~~v~~~~~s--~~----~la~g~~~~~~d~~i~i~~~~~~--~~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 84 (337)
+++-.+.....-+.++|. +. +||.|. +||.|.+|+.... +........ ...|.+.|..+.|++...
T Consensus 56 k~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~----edG~I~ly~p~~~~~~~~~~~la~-~~~h~G~V~gLDfN~~q~- 129 (1049)
T KOG0307|consen 56 KPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGL----EDGNIVLYDPASIIANASEEVLAT-KSKHTGPVLGLDFNPFQG- 129 (1049)
T ss_pred cccccccccccceeeeecccCCCccceeeccc----cCCceEEecchhhccCcchHHHhh-hcccCCceeeeeccccCC-
Confidence 455666777889999998 43 366666 5999999998762 332222112 268999999999999987
Q ss_pred ccCcCCccEEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccch
Q 038533 85 RKSSSNRHLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVE 162 (337)
Q Consensus 85 ~~~~~~~~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 162 (337)
++||+|++ .|.|||+...+ .-..+.. ....+.|.+++|+......|++++.+|.+.|||++..+.+
T Consensus 130 -------nlLASGa~~geI~iWDlnn~~--tP~~~~~---~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi 197 (1049)
T KOG0307|consen 130 -------NLLASGADDGEILIWDLNKPE--TPFTPGS---QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI 197 (1049)
T ss_pred -------ceeeccCCCCcEEEeccCCcC--CCCCCCC---CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc
Confidence 79999985 99999999863 2222211 1122789999999867789999999999999999999888
Q ss_pred hhhhccCC--ceeEEEeCC--CcEEEEEcCCC---eEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEec
Q 038533 163 TQLIAHDK--EVYDICWGE--ARVFASVSADG---SVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMD 235 (337)
Q Consensus 163 ~~~~~~~~--~v~~~~~~~--~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 235 (337)
..+..+.+ .+..++|+| ...+++++.|. .|.+||+|.......++. .|...|.++.|++.|..+|++++.|
T Consensus 198 i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~--~H~~GilslsWc~~D~~lllSsgkD 275 (1049)
T KOG0307|consen 198 IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE--GHQRGILSLSWCPQDPRLLLSSGKD 275 (1049)
T ss_pred cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc--ccccceeeeccCCCCchhhhcccCC
Confidence 77775554 467899993 55677776654 599999998876666554 4889999999999888999999999
Q ss_pred CCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCC
Q 038533 236 SNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL 290 (337)
Q Consensus 236 ~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 290 (337)
+. |.+|+.++ ++.+..+......+..+.|+|..+.+++.++.||.|.||.+..
T Consensus 276 ~~-ii~wN~~t-gEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 276 NR-IICWNPNT-GEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred CC-eeEecCCC-ceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 99 99999999 6778888877889999999999988999999999999999983
No 153
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=1.6e-24 Score=176.68 Aligned_cols=243 Identities=14% Similarity=0.193 Sum_probs=196.7
Q ss_pred CCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCC-ccceeeecCCCCCcccCCeeEEEeecCCCCeEE
Q 038533 66 SFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSS-IEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIG 143 (337)
Q Consensus 66 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 143 (337)
...|.+-|.++.++...+ .+.+|+. .|+|||+.... ..++..+..-+ ....|.++...| +++.|+
T Consensus 415 tL~HGEvVcAvtIS~~tr---------hVyTgGkgcVKVWdis~pg~k~PvsqLdcl~---rdnyiRSckL~p-dgrtLi 481 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTR---------HVYTGGKGCVKVWDISQPGNKSPVSQLDCLN---RDNYIRSCKLLP-DGRTLI 481 (705)
T ss_pred hhccCcEEEEEEecCCcc---------eeEecCCCeEEEeeccCCCCCCccccccccC---cccceeeeEecC-CCceEE
Confidence 357888899999999888 9999997 99999997652 12333333221 116788999999 999999
Q ss_pred EeeCCCcEEEEeCCCccchh--hhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEE
Q 038533 144 TCSIDTTCTIWDIEKGVVET--QLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLA 220 (337)
Q Consensus 144 ~~~~dg~i~v~d~~~~~~~~--~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~ 220 (337)
+|++-.++.|||+....+.. .+....-..++++.+ +.+..+++..||.|.|||+++.... ....+|.....|+.
T Consensus 482 vGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V---rqfqGhtDGascId 558 (705)
T KOG0639|consen 482 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV---RQFQGHTDGASCID 558 (705)
T ss_pred eccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee---ecccCCCCCceeEE
Confidence 99999999999998765332 333333456778888 7889999999999999999988744 34456889999999
Q ss_pred eecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCC
Q 038533 221 WNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGID 300 (337)
Q Consensus 221 ~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 300 (337)
.++ +|..|-+|+.|+. |+-||+|...++. .. .....|.++..+|++. +|+.|-.++.+.|-... + .+
T Consensus 559 is~-dGtklWTGGlDnt-vRcWDlregrqlq-qh-dF~SQIfSLg~cP~~d-WlavGMens~vevlh~s--k------p~ 625 (705)
T KOG0639|consen 559 ISK-DGTKLWTGGLDNT-VRCWDLREGRQLQ-QH-DFSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTS--K------PE 625 (705)
T ss_pred ecC-CCceeecCCCccc-eeehhhhhhhhhh-hh-hhhhhheecccCCCcc-ceeeecccCcEEEEecC--C------cc
Confidence 999 9999999999999 9999999854432 22 2457899999999999 99999999999998888 2 23
Q ss_pred ceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 301 PMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 301 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
...+..|..-|.++.|.+-|+++++++.|+.+..|+.
T Consensus 626 kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 626 KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred ceeecccccEEEEEEecccCceeeecCchhhhhhccC
Confidence 5577779999999999999999999999999999973
No 154
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.93 E-value=2e-23 Score=165.87 Aligned_cols=285 Identities=19% Similarity=0.282 Sum_probs=212.5
Q ss_pred CCCceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCc-----ceecCCCcCCCCCCCCeEEEecCCCCcccCcCCc
Q 038533 20 SPYPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESL-----SIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNR 91 (337)
Q Consensus 20 ~~~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~-----~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 91 (337)
...+|+++.|. .+.||+|+. |..|+||.++.... .......+ ..|..+|+++.|+|++.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~----D~~iriW~v~r~~~~~~~~~V~y~s~L-s~H~~aVN~vRf~p~ge-------- 78 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGG----DKDIRIWKVNRSEPGGGDMKVEYLSSL-SRHTRAVNVVRFSPDGE-------- 78 (434)
T ss_pred CCCceEEEEeccCcccceecccC----ccceeeeeeeecCCCCCceeEEEeecc-cCCcceeEEEEEcCCcC--------
Confidence 46899999999 458999997 99999999864321 23332244 78999999999999999
Q ss_pred cEEEEeCC--eEEEEecC--------C------CCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEe
Q 038533 92 HLLASSGD--FLRLWDVG--------D------SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWD 155 (337)
Q Consensus 92 ~~l~~~~~--~v~vw~~~--------~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d 155 (337)
+||+|+| .|.+|... + ......+.+.+|. ..|..++|+| ++..+++++-|..+++||
T Consensus 79 -lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~-----~diydL~Ws~-d~~~l~s~s~dns~~l~D 151 (434)
T KOG1009|consen 79 -LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHR-----DDIYDLAWSP-DSNFLVSGSVDNSVRLWD 151 (434)
T ss_pred -eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccc-----cchhhhhccC-CCceeeeeeccceEEEEE
Confidence 9999997 99999877 2 1134556777887 8999999999 999999999999999999
Q ss_pred CCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeee--------------------cCCCCCC
Q 038533 156 IEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIY--------------------ESPQPDT 214 (337)
Q Consensus 156 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------------------~~~~~~~ 214 (337)
+..|+....+..|...+..++|. -++++++-+.|...+.+.+...+...... .......
T Consensus 152 v~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlks 231 (434)
T KOG1009|consen 152 VHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKS 231 (434)
T ss_pred eccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhh
Confidence 99999999999999999999999 58888888888877777665443221111 0101122
Q ss_pred CceEEEeecCCCcEEEEEEe----cC----CEEEEEECCCCCCCeEEeecccceeeEEEeCCC-----------------
Q 038533 215 PLLRLAWNKQDLRYMATILM----DS----NKVVILDIRSPTLPVAELERHRACVNAIAWAPQ----------------- 269 (337)
Q Consensus 215 ~i~~~~~~~~~~~~l~~~~~----d~----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~----------------- 269 (337)
-...++|+| +|.+|++.+. .+ +..++|+-....+|...++....+...+.|+|-
T Consensus 232 FFrRlsfTP-dG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lp 310 (434)
T KOG1009|consen 232 FFRRLSFTP-DGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLP 310 (434)
T ss_pred hhhhcccCC-CCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccc
Confidence 345678998 8988887432 11 125777766666777777776666666666652
Q ss_pred CCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCce--eeeeCCCceeEEEEccCCCceEEEEcCCcEEE
Q 038533 270 SRRHICSVGDDSQAFIWELPLPPVAGPNGIDPM--SMYSAGSEINQLQWSPAQPDWLAIAFSNKMQL 334 (337)
Q Consensus 270 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 334 (337)
.+..+|.++ .+.+.+||.+ ... |+ ...-|-..|++++|+++|..|+.++.||-+.+
T Consensus 311 yrlvfaiAt-~~svyvydtq--~~~------P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 311 YRLVFAIAT-KNSVYVYDTQ--TLE------PLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL 368 (434)
T ss_pred cceEEEEee-cceEEEeccc--ccc------ceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence 121344444 5689999999 321 33 44458889999999999999999999987654
No 155
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.8e-25 Score=188.11 Aligned_cols=228 Identities=20% Similarity=0.269 Sum_probs=194.1
Q ss_pred CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC
Q 038533 21 PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG 98 (337)
Q Consensus 21 ~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~ 98 (337)
...|.++..- ++.+++|+. |..+-+|.+......... .+|+.+|.++.|++... +|++|+
T Consensus 28 saav~~lk~~~s~r~~~~Gg~----~~k~~L~~i~kp~~i~S~-----~~hespIeSl~f~~~E~---------Llaags 89 (825)
T KOG0267|consen 28 SAAVGCLKIRKSSRSLVTGGE----DEKVNLWAIGKPNAITSL-----TGHESPIESLTFDTSER---------LLAAGS 89 (825)
T ss_pred hhhhceeeeeccceeeccCCC----ceeeccccccCCchhhee-----eccCCcceeeecCcchh---------hhcccc
Confidence 4445555543 688889886 888889987765554442 79999999999999998 998888
Q ss_pred -C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEE
Q 038533 99 -D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDIC 176 (337)
Q Consensus 99 -~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~ 176 (337)
+ +|++||+... +.+++|.+|. ..+.+++|+| -+.+++.|+.|+.+++||.+...+.+.+.+|...+..+.
T Consensus 90 asgtiK~wDleeA--k~vrtLtgh~-----~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 90 ASGTIKVWDLEEA--KIVRTLTGHL-----LNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred cCCceeeeehhhh--hhhhhhhccc-----cCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 4 9999999988 7788999998 9999999999 889999999999999999998888999999999999999
Q ss_pred eC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEee
Q 038533 177 WG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELE 255 (337)
Q Consensus 177 ~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~ 255 (337)
|+ +|++++.++.|..+++||+..++.... ...|.+.+..+.|+| ..-+++.|+.|+. +++||+++ .+.+....
T Consensus 162 lsP~Gr~v~~g~ed~tvki~d~~agk~~~e---f~~~e~~v~sle~hp-~e~Lla~Gs~d~t-v~f~dlet-fe~I~s~~ 235 (825)
T KOG0267|consen 162 LSPDGRWVASGGEDNTVKIWDLTAGKLSKE---FKSHEGKVQSLEFHP-LEVLLAPGSSDRT-VRFWDLET-FEVISSGK 235 (825)
T ss_pred ecCCCceeeccCCcceeeeecccccccccc---cccccccccccccCc-hhhhhccCCCCce-eeeeccce-eEEeeccC
Confidence 99 688999999999999999999885443 334789999999999 8899999999999 99999997 44555555
Q ss_pred cccceeeEEEeCCCCCCeEEEEcCCC
Q 038533 256 RHRACVNAIAWAPQSRRHICSVGDDS 281 (337)
Q Consensus 256 ~~~~~v~~~~~~~~~~~~l~~~~~dg 281 (337)
.....|.+.+|+|++. .+++|..+.
T Consensus 236 ~~~~~v~~~~fn~~~~-~~~~G~q~s 260 (825)
T KOG0267|consen 236 PETDGVRSLAFNPDGK-IVLSGEQIS 260 (825)
T ss_pred CccCCceeeeecCCce-eeecCchhh
Confidence 5677899999999998 777776543
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=1.4e-22 Score=156.81 Aligned_cols=283 Identities=16% Similarity=0.202 Sum_probs=200.8
Q ss_pred eeEEEEe--cceEEEeeeeccCcceEEEEEecCCCccee--------cCCCcCCCCCCCCeEEEecCCCCcccCcCCccE
Q 038533 24 LYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIK--------THPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHL 93 (337)
Q Consensus 24 v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~--------~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 93 (337)
...+.|+ |..|++-+. |+.+.+|++..+..... ....+.......|...+|-+.-++. +....+
T Consensus 52 ~kgckWSPDGSciL~~se----dn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~--qP~t~l 125 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSE----DNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSD--QPSTNL 125 (406)
T ss_pred hccceeCCCCceEEeecc----cCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccC--CCccce
Confidence 4567888 888888886 99999999864332111 1111223345667778886432211 111237
Q ss_pred EEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeC-CCccc--hhhhh--
Q 038533 94 LASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDI-EKGVV--ETQLI-- 166 (337)
Q Consensus 94 l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~--~~~~~-- 166 (337)
+|+.+ + -|++||.-+++.+.....-.|..+. ....+++|+| ++.+|++|. ...|+++|+ +.|+. +....
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~--taAhsL~Fs~-DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~ 201 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEY--TAAHSLQFSP-DGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTK 201 (406)
T ss_pred eeeccccCceeeeeccccccccchhhhhhHHhh--hhheeEEecC-CCCeEeecc-cceEEEeeccCCCCCCcchhhhhc
Confidence 77777 5 9999999999544433333343111 3456899999 999999876 579999998 55542 22111
Q ss_pred ---ccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEE
Q 038533 167 ---AHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI 241 (337)
Q Consensus 167 ---~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i 241 (337)
+..+-+.+++|+ +...++.|+....+-||.-........+. +|.+.|+.++|.+ +|+.|++|+...-.|..
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg---gh~gGvThL~~~e-dGn~lfsGaRk~dkIl~ 277 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG---GHGGGVTHLQWCE-DGNKLFSGARKDDKILC 277 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec---ccCCCeeeEEecc-CcCeecccccCCCeEEE
Confidence 236778999999 46689999999998888877666433332 5889999999999 99999999876656999
Q ss_pred EECCCCCCCeEEeecccc-eeeEE--EeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEcc
Q 038533 242 LDIRSPTLPVAELERHRA-CVNAI--AWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSP 318 (337)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~-~v~~~--~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 318 (337)
||+|..+.++..+..|.. .-..| ...|+++ +|++|+.||.|++||+. +.. ..+.....+...++.++++|
T Consensus 278 WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk--~~g----n~~sv~~~~sd~vNgvslnP 350 (406)
T KOG2919|consen 278 WDIRYSRDPVYALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLK--DLG----NEVSVTGNYSDTVNGVSLNP 350 (406)
T ss_pred EeehhccchhhhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecC--CCC----CcccccccccccccceecCc
Confidence 999998888888887765 23334 4568898 99999999999999999 433 23556667888999999999
Q ss_pred CCCceEEEE
Q 038533 319 AQPDWLAIA 327 (337)
Q Consensus 319 ~~~~l~~~~ 327 (337)
--+.+++++
T Consensus 351 ~mpilatss 359 (406)
T KOG2919|consen 351 IMPILATSS 359 (406)
T ss_pred ccceeeecc
Confidence 976555444
No 157
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.91 E-value=3.3e-22 Score=158.52 Aligned_cols=238 Identities=17% Similarity=0.242 Sum_probs=177.5
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCC
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGD 108 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~ 108 (337)
+++||+..... ..|...+.-+... +.+.....+..+|.++|..++|+|.+. +.+|+|++ +|.||++..
T Consensus 44 PkfiAvi~eas-gGgaf~ViPl~k~-Gr~d~~~P~v~GHt~~vLDi~w~PfnD--------~vIASgSeD~~v~vW~IPe 113 (472)
T KOG0303|consen 44 PKFVAVIIEAS-GGGAFLVIPLVKT-GRMDASYPLVCGHTAPVLDIDWCPFND--------CVIASGSEDTKVMVWQIPE 113 (472)
T ss_pred CceEEEEEecC-CCcceeecccccc-cccCCCCCCccCccccccccccCccCC--------ceeecCCCCceEEEEECCC
Confidence 77777755322 2444555333322 222222233379999999999999988 79999994 999999976
Q ss_pred CC-----ccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcE
Q 038533 109 SS-----IEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARV 182 (337)
Q Consensus 109 ~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 182 (337)
+. .+++..|.+|. ..|--++|+|...+.|++++.|..|.+||+.+++.+.++. |.+.|+++.|+ +|.+
T Consensus 114 ~~l~~~ltepvv~L~gH~-----rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~ 187 (472)
T KOG0303|consen 114 NGLTRDLTEPVVELYGHQ-----RRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSL 187 (472)
T ss_pred cccccCcccceEEEeecc-----eeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCce
Confidence 53 35678899998 9999999999888999999999999999999999888887 99999999999 9999
Q ss_pred EEEEcCCCeEEEEECCCCCCceeeecCCCCC-CCceEEEeecCCCcEEEEEEe---cCCEEEEEECCCCCCCeEEee-cc
Q 038533 183 FASVSADGSVRIFDLRDKEHSTIIYESPQPD-TPLLRLAWNKQDLRYMATILM---DSNKVVILDIRSPTLPVAELE-RH 257 (337)
Q Consensus 183 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~---d~~~i~i~d~~~~~~~~~~~~-~~ 257 (337)
|++.+.|..|++||.++++....- ..|. ..-..+.|-. ++.++.+|-. +. ++.+||..+...++.... ..
T Consensus 188 l~TtckDKkvRv~dpr~~~~v~e~---~~heG~k~~Raifl~-~g~i~tTGfsr~seR-q~aLwdp~nl~eP~~~~elDt 262 (472)
T KOG0303|consen 188 LCTTCKDKKVRVIDPRRGTVVSEG---VAHEGAKPARAIFLA-SGKIFTTGFSRMSER-QIALWDPNNLEEPIALQELDT 262 (472)
T ss_pred eeeecccceeEEEcCCCCcEeeec---ccccCCCcceeEEec-cCceeeecccccccc-ceeccCcccccCcceeEEecc
Confidence 999999999999999999855444 2232 2344555665 7774444332 23 499999988766654322 22
Q ss_pred cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 258 RACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 258 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
...|.---|.|+.+.+.++|-.|+.||-|.+.
T Consensus 263 SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 263 SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred CCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence 34565566788888445566689999999998
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=6.6e-23 Score=158.82 Aligned_cols=244 Identities=19% Similarity=0.310 Sum_probs=178.7
Q ss_pred CCCceeEEEEe------cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccE
Q 038533 20 SPYPLYAMAVC------GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHL 93 (337)
Q Consensus 20 ~~~~v~~~~~s------~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 93 (337)
++...+.++|+ ..+||+|+. -|.|+|.|+......-.. .+|...|+.|.++|+.. ++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~----~GvIrVid~~~~~~~~~~-----~ghG~sINeik~~p~~~--------ql 150 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGY----LGVIRVIDVVSGQCSKNY-----RGHGGSINEIKFHPDRP--------QL 150 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecc----eeEEEEEecchhhhccce-----eccCccchhhhcCCCCC--------cE
Confidence 45678889998 457888886 999999776654433332 79999999999999998 79
Q ss_pred EEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhh------
Q 038533 94 LASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQL------ 165 (337)
Q Consensus 94 l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~------ 165 (337)
+.+++ | .|++|++++. .++..+.+- ++|...|.+++|++ ++.+|++++.|..|++|++...+....+
T Consensus 151 vls~SkD~svRlwnI~~~--~Cv~VfGG~--egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~ 225 (385)
T KOG1034|consen 151 VLSASKDHSVRLWNIQTD--VCVAVFGGV--EGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITY 225 (385)
T ss_pred EEEecCCceEEEEeccCC--eEEEEeccc--ccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhccc
Confidence 99998 6 9999999999 777777651 23339999999998 9999999999999999999843211111
Q ss_pred ----------------------hccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCC-CC----------ceeeecCCCC
Q 038533 166 ----------------------IAHDKEVYDICWGEARVFASVSADGSVRIFDLRDK-EH----------STIIYESPQP 212 (337)
Q Consensus 166 ----------------------~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~----------~~~~~~~~~~ 212 (337)
.-|...|-|+.|- ++++++-+-++.|..|..... +. ...+......
T Consensus 226 ~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~ 304 (385)
T KOG1034|consen 226 SPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP 304 (385)
T ss_pred CCCCccCcCCccccccccccccccccchHHHHHHH-hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC
Confidence 1245556666665 678999999999999988321 11 1112222223
Q ss_pred CCCceEE--EeecCCCcEEEEEEecCCEEEEEECCCCCCCe-EEee--cccceeeEEEeCCCCCCeEEEEcCCCcEEEEe
Q 038533 213 DTPLLRL--AWNKQDLRYMATILMDSNKVVILDIRSPTLPV-AELE--RHRACVNAIAWAPQSRRHICSVGDDSQAFIWE 287 (337)
Q Consensus 213 ~~~i~~~--~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 287 (337)
...+.-+ +|+| -.+.|+.|...|. |++||++....+. .++. .....|...+|+.++. +|+...+|+.|.-||
T Consensus 305 ~c~iWfirf~~d~-~~~~la~gnq~g~-v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs-~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 305 MCDIWFIRFAFDP-WQKMLALGNQSGK-VYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS-ILVLVCDDGTVWRWD 381 (385)
T ss_pred ccceEEEEEeecH-HHHHHhhccCCCc-EEEEECCCCCCccCceEEeccccceeeeeeecccCc-EEEEEeCCCcEEEEE
Confidence 3445544 4556 6788999999998 9999999854322 2222 1235789999999999 999999999999998
Q ss_pred CC
Q 038533 288 LP 289 (337)
Q Consensus 288 ~~ 289 (337)
..
T Consensus 382 rv 383 (385)
T KOG1034|consen 382 RV 383 (385)
T ss_pred ee
Confidence 64
No 159
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=5.9e-21 Score=158.92 Aligned_cols=264 Identities=12% Similarity=0.123 Sum_probs=176.1
Q ss_pred ceeeeeCCCceeEEEEe--cceE-EEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCC
Q 038533 14 NSVTHESPYPLYAMAVC--GQRI-AVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSN 90 (337)
Q Consensus 14 ~~~~~~~~~~v~~~~~s--~~~l-a~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~ 90 (337)
.+..+.....+.+++|+ ++.+ ++++. ++.|++|+.......... ..+ ..+..++|+|+++
T Consensus 23 ~~~~~~~~~~~~~l~~~~dg~~l~~~~~~----~~~v~~~d~~~~~~~~~~-----~~~-~~~~~~~~~~~g~------- 85 (300)
T TIGR03866 23 VTRTFPVGQRPRGITLSKDGKLLYVCASD----SDTIQVIDLATGEVIGTL-----PSG-PDPELFALHPNGK------- 85 (300)
T ss_pred eEEEEECCCCCCceEECCCCCEEEEEECC----CCeEEEEECCCCcEEEec-----cCC-CCccEEEECCCCC-------
Confidence 44555555557889999 6655 45554 899999987754322211 122 3357889999998
Q ss_pred ccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCC-cEEEEeCCCccchhhhhc
Q 038533 91 RHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT-TCTIWDIEKGVVETQLIA 167 (337)
Q Consensus 91 ~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-~i~v~d~~~~~~~~~~~~ 167 (337)
.++++++ + .+++||+.+. +.+..+..+ ..+.+++|+| +++++++++.++ .+.+||.++++....+.
T Consensus 86 -~l~~~~~~~~~l~~~d~~~~--~~~~~~~~~------~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~- 154 (300)
T TIGR03866 86 -ILYIANEDDNLVTVIDIETR--KVLAEIPVG------VEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL- 154 (300)
T ss_pred -EEEEEcCCCCeEEEEECCCC--eEEeEeeCC------CCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE-
Confidence 3444544 4 9999999887 455555432 3467899999 999999888765 46778998876554433
Q ss_pred cCCceeEEEeC-CCcEEEE-EcCCCeEEEEECCCCCCceeeecC-C---CCCCCceEEEeecCCCcEEEEE-EecCCEEE
Q 038533 168 HDKEVYDICWG-EARVFAS-VSADGSVRIFDLRDKEHSTIIYES-P---QPDTPLLRLAWNKQDLRYMATI-LMDSNKVV 240 (337)
Q Consensus 168 ~~~~v~~~~~~-~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~-~---~~~~~i~~~~~~~~~~~~l~~~-~~d~~~i~ 240 (337)
....+..++|+ +++++++ +..++.|++||+++++....+... . ........+.|+| ++++++++ +.++. +.
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~-i~ 232 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANR-VA 232 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCe-EE
Confidence 23345778999 6777754 456999999999988654433211 0 0111235688999 88876554 44555 99
Q ss_pred EEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEE-cCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEcc
Q 038533 241 ILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSV-GDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSP 318 (337)
Q Consensus 241 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 318 (337)
+||+++ .+.+..+. +...+.+++|+|+++ +|+++ +.+|.|++||+...+ +..........+.++++|
T Consensus 233 v~d~~~-~~~~~~~~-~~~~~~~~~~~~~g~-~l~~~~~~~~~i~v~d~~~~~--------~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 233 VVDAKT-YEVLDYLL-VGQRVWQLAFTPDEK-YLLTTNGVSNDVSVIDVAALK--------VIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred EEECCC-CcEEEEEE-eCCCcceEEECCCCC-EEEEEcCCCCeEEEEECCCCc--------EEEEEEcccccceeEeCC
Confidence 999987 44444433 445789999999999 77765 568999999999222 222223445568888765
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=155.79 Aligned_cols=252 Identities=15% Similarity=0.161 Sum_probs=191.8
Q ss_pred CCccceeeeeCCCceeEEEEe---------cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCC---CeEEE
Q 038533 10 LRSENSVTHESPYPLYAMAVC---------GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYP---PTKLM 77 (337)
Q Consensus 10 ~~~~~~~~~~~~~~v~~~~~s---------~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~---i~~i~ 77 (337)
.+..+.+.+.....|+...|- ..++|+.+. +.-|++||.-........ .. ..|.+. -.+++
T Consensus 93 ~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr----~~PIh~wdaftG~lraSy--~~-ydh~de~taAhsL~ 165 (406)
T KOG2919|consen 93 FSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR----DQPIHLWDAFTGKLRASY--RA-YDHQDEYTAAHSLQ 165 (406)
T ss_pred cccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc----cCceeeeeccccccccch--hh-hhhHHhhhhheeEE
Confidence 445566677778889988886 577787776 999999998766554433 22 455544 46899
Q ss_pred ecCCCCcccCcCCccEEEEeCC-eEEEEec-CCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEe
Q 038533 78 FDPNSSSRKSSSNRHLLASSGD-FLRLWDV-GDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWD 155 (337)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d 155 (337)
|+|||. .|.+|.. .|++||+ +.++...+.....+.+.+..+-|.+++|+|.+...++.|+....+-||.
T Consensus 166 Fs~DGe---------qlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~ 236 (406)
T KOG2919|consen 166 FSPDGE---------QLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYN 236 (406)
T ss_pred ecCCCC---------eEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEe
Confidence 999999 8888887 9999999 4443222222222322233378999999998888999999999999998
Q ss_pred CCCccchhhhhccCCceeEEEeC-CCcEEEEEcC-CCeEEEEECCCCCCceeeecC-CCCCCCceEEEeecCCCcEEEEE
Q 038533 156 IEKGVVETQLIAHDKEVYDICWG-EARVFASVSA-DGSVRIFDLRDKEHSTIIYES-PQPDTPLLRLAWNKQDLRYMATI 232 (337)
Q Consensus 156 ~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~ 232 (337)
-..+.++..+-+|.+.|+.++|. +|+.|++|.. |-.|..||+|..+.+...... ......-.-....| .+++|++|
T Consensus 237 ~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG 315 (406)
T KOG2919|consen 237 DDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASG 315 (406)
T ss_pred cCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeecc
Confidence 88888999999999999999999 8999998876 778999999987643322222 11112223344567 89999999
Q ss_pred EecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCC
Q 038533 233 LMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDD 280 (337)
Q Consensus 233 ~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 280 (337)
+.+|. |++||++..+.++..+..+...++.++++|--+ ++|+++..
T Consensus 316 ~tdG~-V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mp-ilatssGq 361 (406)
T KOG2919|consen 316 DTDGS-VRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMP-ILATSSGQ 361 (406)
T ss_pred CCCcc-EEEEecCCCCCcccccccccccccceecCcccc-eeeeccCc
Confidence 99999 999999998887888888999999999999988 88888754
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=3.9e-22 Score=168.22 Aligned_cols=274 Identities=13% Similarity=0.185 Sum_probs=205.5
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.....|+.++|- |..|+.+. +..+.|||.+..+.... ..+|.+.|++++|+.+|+ .+|+
T Consensus 10 ~~~hci~d~afkPDGsqL~lAA-----g~rlliyD~ndG~llqt-----LKgHKDtVycVAys~dGk---------rFAS 70 (1081)
T KOG1538|consen 10 KAEHCINDIAFKPDGTQLILAA-----GSRLLVYDTSDGTLLQP-----LKGHKDTVYCVAYAKDGK---------RFAS 70 (1081)
T ss_pred ccccchheeEECCCCceEEEec-----CCEEEEEeCCCcccccc-----cccccceEEEEEEccCCc---------eecc
Confidence 334479999998 77777776 78899988776553333 389999999999999999 9999
Q ss_pred eC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeE
Q 038533 97 SG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 97 ~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
|+ | .|.+|+.+-. ..+ .+ .|. +.|.|+.|+| -...+++++- ...-+|...... +...+ ....+.+
T Consensus 71 G~aDK~VI~W~~klE--G~L-kY-SH~-----D~IQCMsFNP-~~h~LasCsL-sdFglWS~~qK~-V~K~k-ss~R~~~ 137 (1081)
T KOG1538|consen 71 GSADKSVIIWTSKLE--GIL-KY-SHN-----DAIQCMSFNP-ITHQLASCSL-SDFGLWSPEQKS-VSKHK-SSSRIIC 137 (1081)
T ss_pred CCCceeEEEeccccc--cee-ee-ccC-----CeeeEeecCc-hHHHhhhcch-hhccccChhhhh-HHhhh-hheeEEE
Confidence 98 6 9999986543 122 22 344 8999999999 7788999875 467789875433 33333 3567889
Q ss_pred EEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCC----cEEEEEEecCCEEEEEECCCCCC
Q 038533 175 ICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDL----RYMATILMDSNKVVILDIRSPTL 249 (337)
Q Consensus 175 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~l~~~~~d~~~i~i~d~~~~~~ 249 (337)
.+|. +|.+|+.|-.+|+|.+-+-...+ ...+....+.+++|.+++|+|..+ ..+++.....+ +.+|.+.. +
T Consensus 138 CsWtnDGqylalG~~nGTIsiRNk~gEe-k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~LsG--~ 213 (1081)
T KOG1538|consen 138 CSWTNDGQYLALGMFNGTISIRNKNGEE-KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQLSG--K 213 (1081)
T ss_pred eeecCCCcEEEEeccCceEEeecCCCCc-ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEecc--e
Confidence 9999 99999999999999998654443 333444446789999999999433 46777777776 88888763 3
Q ss_pred CeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcC
Q 038533 250 PVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFS 329 (337)
Q Consensus 250 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 329 (337)
.+..-+.-.-...|+.+.|+|+ +++.|+.|+.+.+|-.+ |...-+.......|+.++..|+++.++.++.|
T Consensus 214 ~Igk~r~L~FdP~CisYf~NGE-y~LiGGsdk~L~~fTR~--------GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqD 284 (1081)
T KOG1538|consen 214 QIGKDRALNFDPCCISYFTNGE-YILLGGSDKQLSLFTRD--------GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQD 284 (1081)
T ss_pred eecccccCCCCchhheeccCCc-EEEEccCCCceEEEeec--------CeEEeeccccceeEEEEEEccCCceEEEEEcc
Confidence 3333333334567899999999 99999999999999877 23233444567789999999999999999999
Q ss_pred CcEEEEeC
Q 038533 330 NKMQLLKV 337 (337)
Q Consensus 330 ~~i~iw~l 337 (337)
|+|--|++
T Consensus 285 GTiACyNl 292 (1081)
T KOG1538|consen 285 GTIACYNL 292 (1081)
T ss_pred Ceeehhhh
Confidence 99987764
No 162
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.1e-21 Score=152.92 Aligned_cols=282 Identities=16% Similarity=0.226 Sum_probs=194.7
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCC
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGD 108 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~ 108 (337)
...+|++.. +|.|+||++......... .+++..++.++|..+.. ++.+.+|+ | +|++||++.
T Consensus 40 e~~vav~lS----ngsv~lyd~~tg~~l~~f-----k~~~~~~N~vrf~~~ds-------~h~v~s~ssDG~Vr~wD~Rs 103 (376)
T KOG1188|consen 40 ETAVAVSLS----NGSVRLYDKGTGQLLEEF-----KGPPATTNGVRFISCDS-------PHGVISCSSDGTVRLWDIRS 103 (376)
T ss_pred ceeEEEEec----CCeEEEEeccchhhhhee-----cCCCCcccceEEecCCC-------CCeeEEeccCCeEEEEEeec
Confidence 456888887 999999998874332222 67888899999977522 14666665 7 999999998
Q ss_pred CCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee----CCCcEEEEeCCCccc-hhhh-hccCCceeEEEeC--CC
Q 038533 109 SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS----IDTTCTIWDIEKGVV-ETQL-IAHDKEVYDICWG--EA 180 (337)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----~dg~i~v~d~~~~~~-~~~~-~~~~~~v~~~~~~--~~ 180 (337)
.....+.....+. ..+..+++.+. +.+.+++|. .+-.|.+||++..+. +..+ ..|.+.|++++|+ +.
T Consensus 104 ~~e~a~~~~~~~~----~~~f~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p 178 (376)
T KOG1188|consen 104 QAESARISWTQQS----GTPFICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP 178 (376)
T ss_pred chhhhheeccCCC----CCcceEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC
Confidence 7545555555543 24677888876 778888885 466799999998775 5444 5899999999999 58
Q ss_pred cEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecc---
Q 038533 181 RVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERH--- 257 (337)
Q Consensus 181 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~--- 257 (337)
++|++|+.||.+.+||+........+...-.+...|.++.|....-+.+.+-+..+. ..+|+++... +...+...
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~~~-~~~~~~~~~~~ 256 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELEDGS-EETWLENPDVS 256 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccCCC-hhhcccCccch
Confidence 999999999999999998775433333333456789999998733346888888888 9999998743 22222211
Q ss_pred ---------cceeeEEEeCCCCCCeEEEEcC-CCcEEEEeCCCCCCCCCCCCCceeee-eCCCceeEEEEccCCCceEEE
Q 038533 258 ---------RACVNAIAWAPQSRRHICSVGD-DSQAFIWELPLPPVAGPNGIDPMSMY-SAGSEINQLQWSPAQPDWLAI 326 (337)
Q Consensus 258 ---------~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~ 326 (337)
...+-. ..+|.+...++.++. -|...++-+....... ....+..+. +|..-|+++.|...+..++++
T Consensus 257 ~~d~r~~~~~dY~I~-~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~-~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TG 334 (376)
T KOG1188|consen 257 ADDLRKEDNCDYVIN-EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS-LLTEPAILQGGHEEIVRDILFDVKNDVLYTG 334 (376)
T ss_pred hhhHHhhhhhhheee-cccCCCcceEEEeccccCceeEEEeeeccccc-ccCccccccCCcHHHHHHHhhhcccceeecc
Confidence 011111 123444335655554 5666666555211111 111233344 477788999999888899999
Q ss_pred EcCCcEEEEeC
Q 038533 327 AFSNKMQLLKV 337 (337)
Q Consensus 327 ~~d~~i~iw~l 337 (337)
++||.+.+|++
T Consensus 335 GEDG~l~~Wk~ 345 (376)
T KOG1188|consen 335 GEDGLLQAWKV 345 (376)
T ss_pred CCCceEEEEec
Confidence 99999999973
No 163
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=2.4e-21 Score=163.79 Aligned_cols=290 Identities=17% Similarity=0.239 Sum_probs=215.2
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCc--CCCCCCCCeEEEecCCCCcccCcCCccEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSL--SFDHPYPPTKLMFDPNSSSRKSSSNRHLL 94 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~--~~~~~~~i~~i~~~~~~~~~~~~~~~~~l 94 (337)
.|++-|+++.|+ +..|++++. |+++.||.-+..++.......+ ..+.........|+|++. .+
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~---------~i 331 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN---------VI 331 (764)
T ss_pred CcccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCC---------EE
Confidence 478889999999 667888887 9999999988877655432121 123345688999999998 66
Q ss_pred EEeC-C-eEEEEecCC-CCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCC-------------
Q 038533 95 ASSG-D-FLRLWDVGD-SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEK------------- 158 (337)
Q Consensus 95 ~~~~-~-~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~------------- 158 (337)
++-+ . ..++|...+ ........+.+|. +.|++++|+| .+.++++.+.|.+-|++-.-.
T Consensus 332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~-----~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQi 405 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHV-----DGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQI 405 (764)
T ss_pred EEecccCcEEEEeccCccceeecccccccc-----ccceeeeecC-CCCEEEEeccccceeeecccccccceeeeccccc
Confidence 6555 3 999998333 2234555667787 9999999998 889999998888877753210
Q ss_pred ----------------------------------------------------------------------------c---
Q 038533 159 ----------------------------------------------------------------------------G--- 159 (337)
Q Consensus 159 ----------------------------------------------------------------------------~--- 159 (337)
|
T Consensus 406 HGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~ 485 (764)
T KOG1063|consen 406 HGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEA 485 (764)
T ss_pred ccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccc
Confidence 0
Q ss_pred ------------------------------cchhhhhccCCceeEEEeC-CCcEEEEEcCCC-----eEEEEECCCCCCc
Q 038533 160 ------------------------------VVETQLIAHDKEVYDICWG-EARVFASVSADG-----SVRIFDLRDKEHS 203 (337)
Q Consensus 160 ------------------------------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg-----~i~iwd~~~~~~~ 203 (337)
..++++-+|...|++++.+ +++++++++... .|++|+..+....
T Consensus 486 ~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~ 565 (764)
T KOG1063|consen 486 AVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV 565 (764)
T ss_pred ceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh
Confidence 0111222466669999999 799999987643 5999999888754
Q ss_pred eeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCe---EEeecccceeeEEEeCCCCCCeEEEEcCC
Q 038533 204 TIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPV---AELERHRACVNAIAWAPQSRRHICSVGDD 280 (337)
Q Consensus 204 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 280 (337)
.. ...|.-.|+.++|+| ++++|++.+.|.. +.+|......... .....|..-|.+..|+|++. +++|+|.|
T Consensus 566 ~~---L~~HsLTVT~l~FSp-dg~~LLsvsRDRt-~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRD 639 (764)
T KOG1063|consen 566 QE---LEGHSLTVTRLAFSP-DGRYLLSVSRDRT-VSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRD 639 (764)
T ss_pred he---ecccceEEEEEEECC-CCcEEEEeecCce-EEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCC
Confidence 42 235788999999999 9999999999998 9999886533322 23678999999999999999 89999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccC----CCceEEEE-cCCcEEEEe
Q 038533 281 SQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPA----QPDWLAIA-FSNKMQLLK 336 (337)
Q Consensus 281 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~d~~i~iw~ 336 (337)
.+|++|......... ........+...|+.++|.|- ...+++.+ ..|.|.+|+
T Consensus 640 K~VkVW~~~~~~d~~---i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 640 KKVKVWEEPDLRDKY---ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred ceEEEEeccCchhhh---hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 999999998321011 111144568889999999883 23366665 789999997
No 164
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.4e-22 Score=153.56 Aligned_cols=240 Identities=15% Similarity=0.198 Sum_probs=180.8
Q ss_pred CeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCc
Q 038533 73 PTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTT 150 (337)
Q Consensus 73 i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 150 (337)
-.|+.|++.|. +||+|. + .|.|||+.+. ..-+.+.+|. .+|++++||+ ++..|++++.|..
T Consensus 26 a~~~~Fs~~G~---------~lAvGc~nG~vvI~D~~T~--~iar~lsaH~-----~pi~sl~WS~-dgr~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFSRWGD---------YLAVGCANGRVVIYDFDTF--RIARMLSAHV-----RPITSLCWSR-DGRKLLTSSRDWS 88 (405)
T ss_pred cceEEeccCcc---------eeeeeccCCcEEEEEcccc--chhhhhhccc-----cceeEEEecC-CCCEeeeecCCce
Confidence 78999999998 999988 5 9999999998 5777888998 9999999999 9999999999999
Q ss_pred EEEEeCCCccchhhhhccCCceeEEEeCC--CcEEEEEcCCCeEEEEECCCCCCceeeecCC-CCCCCceEEEeecCCCc
Q 038533 151 CTIWDIEKGVVETQLIAHDKEVYDICWGE--ARVFASVSADGSVRIFDLRDKEHSTIIYESP-QPDTPLLRLAWNKQDLR 227 (337)
Q Consensus 151 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ 227 (337)
|.+||+..|.+++.+. ..++|..+.|+| .+.+++.-.+..-.+-++..+.......... ..+....+..|.+ .|+
T Consensus 89 i~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~ 166 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGK 166 (405)
T ss_pred eEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCC
Confidence 9999999999888876 678999999993 4455544444445566666543211111110 1112223345787 999
Q ss_pred EEEEEEecCCEEEEEECCCCCCCeEEeeccc-ceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCC-CCCceeee
Q 038533 228 YMATILMDSNKVVILDIRSPTLPVAELERHR-ACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPN-GIDPMSMY 305 (337)
Q Consensus 228 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~ 305 (337)
++++|...|. +.++|..+ .+++..++... ..|..+.++..|+ .|+.-+.|..||.|+++ ....+. +..+....
T Consensus 167 yIitGtsKGk-llv~~a~t-~e~vas~rits~~~IK~I~~s~~g~-~liiNtsDRvIR~ye~~--di~~~~r~~e~e~~~ 241 (405)
T KOG1273|consen 167 YIITGTSKGK-LLVYDAET-LECVASFRITSVQAIKQIIVSRKGR-FLIINTSDRVIRTYEIS--DIDDEGRDGEVEPEH 241 (405)
T ss_pred EEEEecCcce-EEEEecch-heeeeeeeechheeeeEEEEeccCc-EEEEecCCceEEEEehh--hhcccCccCCcChhH
Confidence 9999999998 99999998 46677666555 6889999999999 99999999999999998 332210 11111111
Q ss_pred -----eCCCceeEEEEccCCCceEEEE-cCCcEEEEe
Q 038533 306 -----SAGSEINQLQWSPAQPDWLAIA-FSNKMQLLK 336 (337)
Q Consensus 306 -----~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~ 336 (337)
-....-.+++|+.+|.++++++ ....++||.
T Consensus 242 K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE 278 (405)
T KOG1273|consen 242 KLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWE 278 (405)
T ss_pred HHHHHHhhhhhhheeecCCccEEEeccccceeEEEEe
Confidence 1234567889999999988876 456888985
No 165
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.8e-22 Score=159.31 Aligned_cols=244 Identities=14% Similarity=0.179 Sum_probs=188.0
Q ss_pred CCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCC-eEEE
Q 038533 68 DHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPK-RIGT 144 (337)
Q Consensus 68 ~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~ 144 (337)
...+.|+++.|+|..+ +|.+++ | .++||.+....-..++.+.-.. .+|.+..|.| +|. .+++
T Consensus 211 ps~~~I~sv~FHp~~p---------lllvaG~d~~lrifqvDGk~N~~lqS~~l~~-----fPi~~a~f~p-~G~~~i~~ 275 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAP---------LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEK-----FPIQKAEFAP-NGHSVIFT 275 (514)
T ss_pred cCcCCceEEEecCCCc---------eEEEecCCCcEEEEEecCccChhheeeeecc-----CccceeeecC-CCceEEEe
Confidence 3457899999999998 777777 7 9999999876545555555544 8999999999 777 9999
Q ss_pred eeCCCcEEEEeCCCccch--hhhhccC-CceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEE
Q 038533 145 CSIDTTCTIWDIEKGVVE--TQLIAHD-KEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLA 220 (337)
Q Consensus 145 ~~~dg~i~v~d~~~~~~~--~~~~~~~-~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~ 220 (337)
++....++.||+++.+.. ....++. ..+.....+ ++++++..+..|.|.+....+++.+..+.. ++.+..++
T Consensus 276 s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki----eG~v~~~~ 351 (514)
T KOG2055|consen 276 SGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI----EGVVSDFT 351 (514)
T ss_pred cccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee----ccEEeeEE
Confidence 999999999999987733 2333443 345667777 789999999999999999999887666543 48899999
Q ss_pred eecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccc-eeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCC
Q 038533 221 WNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRA-CVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGI 299 (337)
Q Consensus 221 ~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~ 299 (337)
|+. +++.|++++.+|. |++||++.. .+++.+....+ .-++++.++++. +||+|+..|.|.|||.+ +.......
T Consensus 352 fsS-dsk~l~~~~~~Ge-V~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~--s~~~s~~P 425 (514)
T KOG2055|consen 352 FSS-DSKELLASGGTGE-VYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGN--SCFASTNP 425 (514)
T ss_pred Eec-CCcEEEEEcCCce-EEEEecCCc-ceEEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccc--hhhccCCC
Confidence 997 8999999999997 999999984 56777653221 336778889999 99999999999999987 32221112
Q ss_pred Cce-eeeeCCCceeEEEEccCCCceEEEE--cCCcEEEEe
Q 038533 300 DPM-SMYSAGSEINQLQWSPAQPDWLAIA--FSNKMQLLK 336 (337)
Q Consensus 300 ~~~-~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iw~ 336 (337)
.|. .+..-...|++++|+||.+.|+.++ ..+.+++-.
T Consensus 426 kPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVH 465 (514)
T KOG2055|consen 426 KPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVH 465 (514)
T ss_pred CchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEe
Confidence 232 3444567899999999998777666 356777654
No 166
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.90 E-value=6.3e-22 Score=151.04 Aligned_cols=245 Identities=16% Similarity=0.245 Sum_probs=184.8
Q ss_pred eeeCCCceeEEEEe-------cceEEEeeeeccCcceEEEEEecCCCcceecCCCc----CCCCCCCCeEEEecCCCCcc
Q 038533 17 THESPYPLYAMAVC-------GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSL----SFDHPYPPTKLMFDPNSSSR 85 (337)
Q Consensus 17 ~~~~~~~v~~~~~s-------~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~----~~~~~~~i~~i~~~~~~~~~ 85 (337)
+|.|+.|++.+-|. .++||+.+ ..+++|.+..+.........+ ...+..++++..|+.-..
T Consensus 92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~------D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp-- 163 (364)
T KOG0290|consen 92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS------DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDP-- 163 (364)
T ss_pred CCCCCCCccceEecCCccccCcchhhccc------CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCc--
Confidence 37889999999998 46777765 689999998755544332222 346778999999998776
Q ss_pred cCcCCccEEEEeC-C-eEEEEecCCCC-ccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccch
Q 038533 86 KSSSNRHLLASSG-D-FLRLWDVGDSS-IEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVE 162 (337)
Q Consensus 86 ~~~~~~~~l~~~~-~-~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 162 (337)
+++.+++ | +..|||++++. ......+-.|. .+|..++|.....+.||+.+.||.++++|++..+--
T Consensus 164 ------~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHD-----KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS 232 (364)
T KOG0290|consen 164 ------NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHD-----KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS 232 (364)
T ss_pred ------ceeEeecccCeEEEEEEeeccccceeeEEEecC-----cceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence 6888888 7 99999999872 23456677888 999999998755689999999999999999876532
Q ss_pred hhh---hccCCceeEEEeC--CCcEEEEEcCC-CeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecC
Q 038533 163 TQL---IAHDKEVYDICWG--EARVFASVSAD-GSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDS 236 (337)
Q Consensus 163 ~~~---~~~~~~v~~~~~~--~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 236 (337)
..+ .....+...++|+ +.+++++-..| ..|.+.|+|....+.... ..|...|+.++|.|.....+.+++.|.
T Consensus 233 TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L--~~H~a~VNgIaWaPhS~~hictaGDD~ 310 (364)
T KOG0290|consen 233 TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL--RNHQASVNGIAWAPHSSSHICTAGDDC 310 (364)
T ss_pred eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh--hcCcccccceEecCCCCceeeecCCcc
Confidence 222 2224578889999 67788876554 569999999887544433 458999999999998899999999888
Q ss_pred CEEEEEECCCCCC-----CeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEE
Q 038533 237 NKVVILDIRSPTL-----PVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFI 285 (337)
Q Consensus 237 ~~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 285 (337)
. +.+||+..... |+..+. -.+.|+.+.|+|..+..++.+. ++++.+
T Consensus 311 q-aliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 311 Q-ALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred e-EEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 7 99999986443 232333 3568999999987776777776 344443
No 167
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.2e-21 Score=155.64 Aligned_cols=296 Identities=15% Similarity=0.135 Sum_probs=213.8
Q ss_pred eeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCccee--cCCCcCCCCCCCCeEEEecCCCCcccCcCCccE
Q 038533 18 HESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIK--THPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHL 93 (337)
Q Consensus 18 ~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 93 (337)
..|.+.|.++.|+ +++||+|+. |-.+++|.++..-.... ........|...|.|++|...+. +
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~---------~ 119 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR---------F 119 (609)
T ss_pred hhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe---------e
Confidence 3578899999999 999999997 99999999874221111 11122356778999999999888 9
Q ss_pred EEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc-chhh--hhcc
Q 038533 94 LASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV-VETQ--LIAH 168 (337)
Q Consensus 94 l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~--~~~~ 168 (337)
+.+|+. +|.+.|+.+.+ .+..+. |. ...+.|..+.-+| ..+.|++.+.+|.|.+||.+... .... ....
T Consensus 120 ~~SG~~~~~VI~HDiEt~q--si~V~~-~~--~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 120 LYSGERWGTVIKHDIETKQ--SIYVAN-EN--NNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred EecCCCcceeEeeecccce--eeeeec-cc--CcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 999984 99999999984 333332 21 1116899999999 68899999999999999998765 2221 1233
Q ss_pred CCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeee----cCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEE
Q 038533 169 DKEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIY----ESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVIL 242 (337)
Q Consensus 169 ~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~ 242 (337)
......+.|+ ...+|++.+..+.+.+||.+........+ ..+........+.|+| +|+.|++.-.... -.+|
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~-P~~~ 271 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKC-PLYF 271 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCC-CEEe
Confidence 4567888999 37899999999999999999876543322 1112234457889999 8888877665555 6788
Q ss_pred ECCCCCCCeEEeecc------cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCC---CCC-------------CC
Q 038533 243 DIRSPTLPVAELERH------RACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAG---PNG-------------ID 300 (337)
Q Consensus 243 d~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~---~~~-------------~~ 300 (337)
|+-+...++..+... ...+.+++|-.+. -+++|+.+-.|++|.+......- ..+ ..
T Consensus 272 D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~--~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~ 349 (609)
T KOG4227|consen 272 DFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY--TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKE 349 (609)
T ss_pred eeecccceeEeccCCCCcceeeeeeeeeeeecce--eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecce
Confidence 887755555444311 1256677887665 49999999999999997321110 001 11
Q ss_pred ceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 301 PMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 301 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
..++.+|..-++.+.|+|....|++.+-.+.++||.
T Consensus 350 ~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 350 LTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 236779999999999999997788888899999995
No 168
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=8.1e-22 Score=165.19 Aligned_cols=253 Identities=16% Similarity=0.263 Sum_probs=181.4
Q ss_pred eeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 18 HESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 18 ~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
..|...|..++|- ..+|++++. |.++++||+......-. .+..+|.+.|.+++|.|.+. .+|+
T Consensus 97 ~aH~nAifDl~wapge~~lVsasG----DsT~r~Wdvk~s~l~G~---~~~~GH~~SvkS~cf~~~n~--------~vF~ 161 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAPGESLLVSASG----DSTIRPWDVKTSRLVGG---RLNLGHTGSVKSECFMPTNP--------AVFC 161 (720)
T ss_pred ccccceeEeeccCCCceeEEEccC----Cceeeeeeeccceeecc---eeecccccccchhhhccCCC--------ccee
Confidence 4578899999999 667777876 99999999986553322 12389999999999999998 7889
Q ss_pred EeC-C-eEEEEecCCCCc-----cceeeecCCC---------------CCc----ccCCeeEEEeecCCCCeEEEeeC-C
Q 038533 96 SSG-D-FLRLWDVGDSSI-----EPVAVLNNSK---------------SSE----FCAPLTSFDWNEIEPKRIGTCSI-D 148 (337)
Q Consensus 96 ~~~-~-~v~vw~~~~~~~-----~~~~~~~~~~---------------~~~----~~~~i~~~~~~~~~~~~l~~~~~-d 148 (337)
+|+ | .|.|||+.-... ........|+ ... ..+.|+.+.| . |...||+++. |
T Consensus 162 tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-k-De~tlaSaga~D 239 (720)
T KOG0321|consen 162 TGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-K-DESTLASAGAAD 239 (720)
T ss_pred eccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-e-ccceeeeccCCC
Confidence 988 5 999999864320 0000011111 011 1134555666 3 7889999988 9
Q ss_pred CcEEEEeCCCccchhh--------hhcc---CCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCC-
Q 038533 149 TTCTIWDIEKGVVETQ--------LIAH---DKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTP- 215 (337)
Q Consensus 149 g~i~v~d~~~~~~~~~--------~~~~---~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~- 215 (337)
+.|+|||+++...... +..| .-.+.++..+ .|.+|++.+.|+.|.+|+++.................
T Consensus 240 ~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf 319 (720)
T KOG0321|consen 240 STIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSF 319 (720)
T ss_pred cceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCccccee
Confidence 9999999997653222 2223 2345666666 5777777777999999999987643222211111111
Q ss_pred ceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 216 LLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 216 i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
-..-..+| ++.++++|+.|.. .++|.+.+...+...+.+|...|++++|.|..-.-++++++|..+++|++.
T Consensus 320 ~vks~lSp-d~~~l~SgSsd~~-ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 320 YVKSELSP-DDCSLLSGSSDEQ-AYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred eeeeecCC-CCceEeccCCCcc-eeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 22234567 9999999999999 999999998888888999999999999998765568888999999999996
No 169
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.90 E-value=7.4e-21 Score=164.26 Aligned_cols=272 Identities=18% Similarity=0.213 Sum_probs=197.5
Q ss_pred cceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCC
Q 038533 44 TNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSK 121 (337)
Q Consensus 44 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~ 121 (337)
++.+.||++......... ..-...|.+++|+|... +++++|. + .|.+||+..+...+...+..+
T Consensus 221 ~~~~~vW~~~~p~~Pe~~-----~~~~s~v~~~~f~p~~p--------~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~- 286 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELV-----LESPSEVTCLKFCPFDP--------NLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL- 286 (555)
T ss_pred CceEEEEecCCCCCceEE-----EecCCceeEEEeccCCc--------ceEEeeccCceEEEEEccCCCCCCCcccccc-
Confidence 357999999877544443 56778899999999988 6777777 3 999999998754323222221
Q ss_pred CCcccCCeeEEEeecCCC--CeEEEeeCCCcEEEEeCCCccc-hh-----hhh------ccCCceeEEEeC--CCcEEEE
Q 038533 122 SSEFCAPLTSFDWNEIEP--KRIGTCSIDTTCTIWDIEKGVV-ET-----QLI------AHDKEVYDICWG--EARVFAS 185 (337)
Q Consensus 122 ~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~v~d~~~~~~-~~-----~~~------~~~~~v~~~~~~--~~~~l~~ 185 (337)
...|..+++.+.|-. +. .-|++++.||.|..|+++.-.. .. ... .....+++++|. +.+.|+.
T Consensus 287 ~~sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV 365 (555)
T KOG1587|consen 287 EVSHSEPVTAVVWLQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV 365 (555)
T ss_pred cccCCcCeEEEEEec-cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE
Confidence 111238999999976 43 3499999999999998765332 11 111 122457889998 5788999
Q ss_pred EcCCCeEEEEECCCCCCce-----eeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccce
Q 038533 186 VSADGSVRIFDLRDKEHST-----IIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRAC 260 (337)
Q Consensus 186 ~~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~ 260 (337)
|+.+|.|.--.....+... .......|.++++++.++|.....+++++ |.. ++||.......|+..+..+...
T Consensus 366 GTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~-vriWs~~~~~~Pl~~~~~~~~~ 443 (555)
T KOG1587|consen 366 GTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWT-VRIWSEDVIASPLLSLDSSPDY 443 (555)
T ss_pred EcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cce-eEeccccCCCCcchhhhhccce
Confidence 9999998763333222111 11122347799999999997667777766 777 9999988447788888888888
Q ss_pred eeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 261 VNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 261 v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
+++++|||..+.+++++..||.|.+||+...... .......+....+.+.|++.|+.|+.+...|.+++|+|
T Consensus 444 v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~-----Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 444 VTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE-----PVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred eeeeEEcCcCceEEEEEcCCCceehhhhhccccC-----CcccccccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 9999999999889999999999999999833311 12233334666788899999988888889999999986
No 170
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.8e-21 Score=162.19 Aligned_cols=239 Identities=16% Similarity=0.254 Sum_probs=192.2
Q ss_pred CCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee
Q 038533 69 HPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS 146 (337)
Q Consensus 69 ~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 146 (337)
.+.+|.+++|+.+.. .||.+- + .|-+|++..+- -+...+.++. +..|.+++|+ ++..|.+.+
T Consensus 24 ~Ps~I~slA~s~kS~---------~lAvsRt~g~IEiwN~~~~w-~~~~vi~g~~----drsIE~L~W~--e~~RLFS~g 87 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN---------QLAVSRTDGNIEIWNLSNNW-FLEPVIHGPE----DRSIESLAWA--EGGRLFSSG 87 (691)
T ss_pred eccceEEEEEeccCC---------ceeeeccCCcEEEEccCCCc-eeeEEEecCC----CCceeeEEEc--cCCeEEeec
Confidence 456799999999998 777776 5 99999999863 3555566654 3789999998 467888888
Q ss_pred CCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCC
Q 038533 147 IDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQD 225 (337)
Q Consensus 147 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 225 (337)
.+|.|.-||+.+++.+..+....+.|++++.+ .+..++.|+.||.+..++...++..... .....++.+.++.|+| +
T Consensus 88 ~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r-~l~rq~sRvLslsw~~-~ 165 (691)
T KOG2048|consen 88 LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR-SLMRQKSRVLSLSWNP-T 165 (691)
T ss_pred CCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe-ecccccceEEEEEecC-C
Confidence 99999999999999999999889999999999 5788999999998888887776643322 2223468999999999 9
Q ss_pred CcEEEEEEecCCEEEEEECCCCCCCeEEee-------c-ccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCC
Q 038533 226 LRYMATILMDSNKVVILDIRSPTLPVAELE-------R-HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPN 297 (337)
Q Consensus 226 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~-------~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 297 (337)
+..++.|+.||. |++||..++.. +.... . ...-|+++.|-.++ .|++|..-|.|.+||...+++.
T Consensus 166 ~~~i~~Gs~Dg~-Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gTLi--- 238 (691)
T KOG2048|consen 166 GTKIAGGSIDGV-IRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGTLI--- 238 (691)
T ss_pred ccEEEecccCce-EEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcchh---
Confidence 999999999998 99999998443 33111 1 22357888888776 5999999999999999955533
Q ss_pred CCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 298 GIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 298 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
.....|...|.+++..+++..+++++.|+.+.-+.
T Consensus 239 ----qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~ 273 (691)
T KOG2048|consen 239 ----QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYS 273 (691)
T ss_pred ----hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEE
Confidence 35556889999999999999999999999887654
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=147.18 Aligned_cols=257 Identities=19% Similarity=0.228 Sum_probs=185.6
Q ss_pred Cccceeeee-CCCceeEEEEe-cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCc
Q 038533 11 RSENSVTHE-SPYPLYAMAVC-GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSS 88 (337)
Q Consensus 11 ~~~~~~~~~-~~~~v~~~~~s-~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 88 (337)
++.|.+.+. +...|+++.|. ..+|..|.. .|.+.+|.++.+...... ...+...|+.+.--|++.
T Consensus 3 pPdP~fvLRp~~~~v~s~~fqa~~rL~sg~~----~G~V~~w~lqt~r~~~~~----r~~g~~~it~lq~~p~d~----- 69 (323)
T KOG0322|consen 3 PPDPFFVLRPHSSSVTSVLFQANERLMSGLS----VGIVKMWVLQTERDLPLI----RLFGRLFITNLQSIPNDS----- 69 (323)
T ss_pred CCCCeeEeccccchheehhhccchhhhcccc----cceEEEEEeecCccchhh----hhhccceeeceeecCCcc-----
Confidence 344555554 57889999999 778999996 999999999977654443 235778889898888865
Q ss_pred CCccEEEEeCC-eEEEEecCCCCc----------------------cce-eeec-----------------------CCC
Q 038533 89 SNRHLLASSGD-FLRLWDVGDSSI----------------------EPV-AVLN-----------------------NSK 121 (337)
Q Consensus 89 ~~~~~l~~~~~-~v~vw~~~~~~~----------------------~~~-~~~~-----------------------~~~ 121 (337)
++.-|-| .+.+|++..... +.. ..+. ...
T Consensus 70 ----l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~ 145 (323)
T KOG0322|consen 70 ----LDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDS 145 (323)
T ss_pred ----hhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCch
Confidence 5555556 888888765210 000 0000 000
Q ss_pred CCcccCCeeEEEeecCCC--CeEEEeeCCCcEEEEeCCCc----------cchhhhhccCCceeEEEeC-CCcEEEEEcC
Q 038533 122 SSEFCAPLTSFDWNEIEP--KRIGTCSIDTTCTIWDIEKG----------VVETQLIAHDKEVYDICWG-EARVFASVSA 188 (337)
Q Consensus 122 ~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~v~d~~~~----------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~ 188 (337)
.....+.++|..+.-..+ -++++|.++|.+.+||+.++ +....+..|..+|.++.+. .-+.=++|+.
T Consensus 146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga 225 (323)
T KOG0322|consen 146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGA 225 (323)
T ss_pred hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCc
Confidence 111124566666433222 36788899999999999987 3344455799999999998 3445577888
Q ss_pred CCeEEEEECCCCCCceee-ecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeC
Q 038533 189 DGSVRIFDLRDKEHSTII-YESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWA 267 (337)
Q Consensus 189 dg~i~iwd~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 267 (337)
+..+..|.+........+ .+....+..+..+...| +++.+++++.|+. |++|..++ ..|+..+..|...|++++|+
T Consensus 226 ~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~R-iRVyswrt-l~pLAVLkyHsagvn~vAfs 302 (323)
T KOG0322|consen 226 DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHR-IRVYSWRT-LNPLAVLKYHSAGVNAVAFS 302 (323)
T ss_pred cccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCc-EEEEEecc-CCchhhhhhhhcceeEEEeC
Confidence 888889988654211111 11111245788889999 9999999999999 99999999 77899999999999999999
Q ss_pred CCCCCeEEEEcCCCcEEEEeC
Q 038533 268 PQSRRHICSVGDDSQAFIWEL 288 (337)
Q Consensus 268 ~~~~~~l~~~~~dg~i~iw~~ 288 (337)
|+.+ ++|+++.|++|.+|++
T Consensus 303 pd~~-lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 PDCE-LMAAASKDARISLWKL 322 (323)
T ss_pred CCCc-hhhhccCCceEEeeec
Confidence 9988 9999999999999986
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.3e-20 Score=139.14 Aligned_cols=280 Identities=16% Similarity=0.209 Sum_probs=189.1
Q ss_pred ceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCc----c-eecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 23 PLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESL----S-IKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 23 ~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~----~-~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
.|.+-+++ +++|++|.. +|.|.++.+..-.. + -+.......+|.++|+.++|. .. +|.
T Consensus 12 tvf~qa~sp~~~~l~agn~----~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~---------~Ll 76 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNL----FGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DD---------FLL 76 (325)
T ss_pred HHHHHhhCCcceEEEEecC----CCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hh---------hee
Confidence 46666777 899999997 99999998763211 0 000001136899999999998 33 888
Q ss_pred EeCC-eEEEEecCCCC----ccceeeec--CCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhcc
Q 038533 96 SSGD-FLRLWDVGDSS----IEPVAVLN--NSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAH 168 (337)
Q Consensus 96 ~~~~-~v~vw~~~~~~----~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 168 (337)
+|+| .|+=|..+... .+.+..++ .|.....-..|+++...| ..+-++.++.|+.++-||+++|+..+++++|
T Consensus 77 s~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGH 155 (325)
T KOG0649|consen 77 SGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGH 155 (325)
T ss_pred eccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCC
Confidence 8887 99988876432 11111111 121111125688999998 4454555557999999999999999999999
Q ss_pred CCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCC-------CCCCceEEEeecCCCcEEEEEEecCCEEE
Q 038533 169 DKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQ-------PDTPLLRLAWNKQDLRYMATILMDSNKVV 240 (337)
Q Consensus 169 ~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~l~~~~~d~~~i~ 240 (337)
.+.|.++.-- ....+++|++||++++||+++.+....+..... -...|.+++- +..+|++|+.-. +.
T Consensus 156 tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGgGp~--ls 230 (325)
T KOG0649|consen 156 TDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGGGPK--LS 230 (325)
T ss_pred cceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecCCCc--ee
Confidence 9999999985 567899999999999999999987766543211 1234556654 677888776543 99
Q ss_pred EEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCC
Q 038533 241 ILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQ 320 (337)
Q Consensus 241 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 320 (337)
+|.++. .++...+. -..++..+.|..+ .+++++..+.+.-|.+. . .............++..|+-.-
T Consensus 231 lwhLrs-se~t~vfp-ipa~v~~v~F~~d---~vl~~G~g~~v~~~~l~--G------vl~a~ip~~s~~c~s~s~~~~p 297 (325)
T KOG0649|consen 231 LWHLRS-SESTCVFP-IPARVHLVDFVDD---CVLIGGEGNHVQSYTLN--G------VLQANIPVESTACYSASWQTSP 297 (325)
T ss_pred EEeccC-CCceEEEe-cccceeEeeeecc---eEEEeccccceeeeeec--c------EEEEeccCCccceeeecccCCc
Confidence 999998 55566654 3467788888765 78888888899999887 2 1111122222234555554332
Q ss_pred CceE-EEEcCCcEEEEe
Q 038533 321 PDWL-AIAFSNKMQLLK 336 (337)
Q Consensus 321 ~~l~-~~~~d~~i~iw~ 336 (337)
-.++ +++..+++.|++
T Consensus 298 ~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 298 IKFISIAGFSNKLHILK 314 (325)
T ss_pred eEEEEecccceeeeeee
Confidence 2344 455667777653
No 173
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.3e-21 Score=160.54 Aligned_cols=239 Identities=16% Similarity=0.248 Sum_probs=184.3
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT 144 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 144 (337)
.+|++.|.+|...|.+. .||+|++ +|+||.+.++ +++.++.-. +.|.|++|+|.....+++
T Consensus 397 rGHtg~Vr~iSvdp~G~---------wlasGsdDGtvriWEi~Tg--Rcvr~~~~d------~~I~~vaw~P~~~~~vLA 459 (733)
T KOG0650|consen 397 RGHTGLVRSISVDPSGE---------WLASGSDDGTVRIWEIATG--RCVRTVQFD------SEIRSVAWNPLSDLCVLA 459 (733)
T ss_pred eccCCeEEEEEecCCcc---------eeeecCCCCcEEEEEeecc--eEEEEEeec------ceeEEEEecCCCCceeEE
Confidence 68999999999999998 9999995 9999999999 677776653 689999999943333444
Q ss_pred eeCCCcEEEEeCCCcc-------------------------------------chhhhhccCCceeEEEeC-CCcEEEEE
Q 038533 145 CSIDTTCTIWDIEKGV-------------------------------------VETQLIAHDKEVYDICWG-EARVFASV 186 (337)
Q Consensus 145 ~~~dg~i~v~d~~~~~-------------------------------------~~~~~~~~~~~v~~~~~~-~~~~l~~~ 186 (337)
......+.+.+..=|. -++....|...|..+.|+ .|++|++.
T Consensus 460 vA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV 539 (733)
T KOG0650|consen 460 VAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV 539 (733)
T ss_pred EEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence 4444445555532220 001112366789999999 89999998
Q ss_pred cCC---CeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeE
Q 038533 187 SAD---GSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNA 263 (337)
Q Consensus 187 ~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~ 263 (337)
..+ ..|.|+++........+.. ..+.+.++.|+| ...+|++++... |++||+.. ...++.+......|..
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~k---skG~vq~v~FHP-s~p~lfVaTq~~--vRiYdL~k-qelvKkL~tg~kwiS~ 612 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRK---SKGLVQRVKFHP-SKPYLFVATQRS--VRIYDLSK-QELVKKLLTGSKWISS 612 (733)
T ss_pred ccCCCcceEEEEecccccccCchhh---cCCceeEEEecC-CCceEEEEeccc--eEEEehhH-HHHHHHHhcCCeeeee
Confidence 764 4688999987764433322 357899999999 777777776554 99999987 5566677667789999
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 264 IAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 264 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
++.+|.|. -|+.|+.|+.+..+|+...+ + ....+..|...+++++|++.-+.+++++.||.+.|+.
T Consensus 613 msihp~GD-nli~gs~d~k~~WfDldlss--k----Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 613 MSIHPNGD-NLILGSYDKKMCWFDLDLSS--K----PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eeecCCCC-eEEEecCCCeeEEEEcccCc--c----hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 99999999 89999999999999999432 1 1236677999999999999999888888899999874
No 174
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.88 E-value=2.5e-20 Score=161.02 Aligned_cols=263 Identities=19% Similarity=0.261 Sum_probs=193.0
Q ss_pred ccceeeeeCCCceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCccee-cCCCcCCCCCCCCeEEEecCCCCcccC
Q 038533 12 SENSVTHESPYPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIK-THPSLSFDHPYPPTKLMFDPNSSSRKS 87 (337)
Q Consensus 12 ~~~~~~~~~~~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~-~~~~~~~~~~~~i~~i~~~~~~~~~~~ 87 (337)
..|-+.+..+.+|.|+.|+ +.+||.|.. +|.|.+||+........ ........|..++..+.|..+..
T Consensus 233 ~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y----~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~---- 304 (555)
T KOG1587|consen 233 NTPELVLESPSEVTCLKFCPFDPNLLAGGCY----NGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEH---- 304 (555)
T ss_pred CCceEEEecCCceeEEEeccCCcceEEeecc----CceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCC----
Confidence 5677778889999999999 788888885 99999999987665321 11123468999999999987655
Q ss_pred cCCccEEEEeCC-eEEEEecCCCCccc-eeeec--CC--CCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc-
Q 038533 88 SSNRHLLASSGD-FLRLWDVGDSSIEP-VAVLN--NS--KSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV- 160 (337)
Q Consensus 88 ~~~~~~l~~~~~-~v~vw~~~~~~~~~-~~~~~--~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~- 160 (337)
+..++.+++| .|..|+++.-.... ...+. .| ........+++++|.+.+.+.+++|+.+|.|.--+-...+
T Consensus 305 --~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~ 382 (555)
T KOG1587|consen 305 --NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTP 382 (555)
T ss_pred --CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcc
Confidence 1136666678 99999887542100 00110 00 1111225789999999899999999999999884432222
Q ss_pred -------chhhhhccCCceeEEEeCC--CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEE
Q 038533 161 -------VETQLIAHDKEVYDICWGE--ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMAT 231 (337)
Q Consensus 161 -------~~~~~~~~~~~v~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 231 (337)
....+..|.++|+++.++| ...|++++ |.++++|.......+...+.. +...+++++|||.....|++
T Consensus 383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~--~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 383 APEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS--SPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred cccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh--ccceeeeeEEcCcCceEEEE
Confidence 1234557889999999995 55666666 999999998844333333332 44569999999988889999
Q ss_pred EEecCCEEEEEECCCC-CCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 232 ILMDSNKVVILDIRSP-TLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 232 ~~~d~~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
+..+|. |.+||+... ..|+.+...+....+.+.|++.|+ +|+.|...|.+.+|++.
T Consensus 460 ~d~~G~-l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 460 VDGDGN-LDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGK-LLAVGDANGTTHILKLS 516 (555)
T ss_pred EcCCCc-eehhhhhccccCCcccccccccccceeecCCCCc-EEEEecCCCcEEEEEcC
Confidence 999999 999999863 256666655666778889999999 99999999999999996
No 175
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.8e-21 Score=149.84 Aligned_cols=193 Identities=17% Similarity=0.251 Sum_probs=154.7
Q ss_pred CeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC---CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCc
Q 038533 140 KRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG---EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPL 216 (337)
Q Consensus 140 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i 216 (337)
+.+|++-.+|.|++||..+++.+..+++++..++.++|. ..+.+.+|+.||+|++||+|.......+........+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 568888899999999999999999999999999999998 26789999999999999999887655554442333577
Q ss_pred eEEEeecCCCcEEEEEEecC---CEEEEEECCCCCCCeEE-eecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCC
Q 038533 217 LRLAWNKQDLRYMATILMDS---NKVVILDIRSPTLPVAE-LERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPP 292 (337)
Q Consensus 217 ~~~~~~~~~~~~l~~~~~d~---~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 292 (337)
.+++.+. .++.+++|..-- ..|.+||.|+..+++.. ...|...|++++|+|..+.+|++|+.||.|.+||+..+.
T Consensus 121 ~~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 121 ICLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 7887765 667777765321 24999999997775554 467999999999999999999999999999999999332
Q ss_pred CCCCCCCCceeeeeCCCceeEEEEccCC-CceEEEEcCCcEEEEeC
Q 038533 293 VAGPNGIDPMSMYSAGSEINQLQWSPAQ-PDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iw~l 337 (337)
. .........|...|..+.|+..+ +.+.+.+..+...+|++
T Consensus 200 --E--eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 200 --E--EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred --c--hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 1 11233555688889999999887 33778888999999975
No 176
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1e-20 Score=150.31 Aligned_cols=247 Identities=15% Similarity=0.169 Sum_probs=187.0
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCC----ccceeeecCCCCCcccCCeeEEEeecCCCC
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSS----IEPVAVLNNSKSSEFCAPLTSFDWNEIEPK 140 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 140 (337)
.+|.+.|++|.|+.+++ +||+|+| .+++|++...- ++++... +|. |.+.|.|++|.. ...
T Consensus 53 ~~H~GCiNAlqFS~N~~---------~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~-~~~---H~SNIF~L~F~~-~N~ 118 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDR---------FLASGGDDMHGRVWNVDELMVRKTPKPIGVM-EHP---HRSNIFSLEFDL-ENR 118 (609)
T ss_pred hhhccccceeeeccCCe---------EEeecCCcceeeeechHHHHhhcCCCCceec-cCc---cccceEEEEEcc-CCe
Confidence 68999999999999988 9999996 99999987531 1333322 221 237899999997 888
Q ss_pred eEEEeeCCCcEEEEeCCCccchhhhhc--cCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCce
Q 038533 141 RIGTCSIDTTCTIWDIEKGVVETQLIA--HDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLL 217 (337)
Q Consensus 141 ~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~ 217 (337)
.+.+|..+++|...|+++.+.+..+.. ..+.|+.+..+ -.+.|++.+.++.|.+||.+..................+
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~ 198 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY 198 (609)
T ss_pred eEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccce
Confidence 999999999999999999987776652 23489999999 488999999999999999998764333333324457789
Q ss_pred EEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeeccc------ceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCC
Q 038533 218 RLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHR------ACVNAIAWAPQSRRHICSVGDDSQAFIWELPLP 291 (337)
Q Consensus 218 ~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 291 (337)
.+.|+|....+|++.+..++ +-+||.+.+..++....+.. ..-.++.|+|.|. .|++--....-.+||+.
T Consensus 199 t~~F~P~~P~Li~~~~~~~G-~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~-Q~msiRR~~~P~~~D~~-- 274 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGG-PNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN-QFMSIRRGKCPLYFDFI-- 274 (609)
T ss_pred eeeecCCCceeEEeccccCC-CCceeeccccchHHhhhccccCcccchhhhheeeCCCCC-eehhhhccCCCEEeeee--
Confidence 99999988999999999999 99999998766654332221 1235788999999 77776666667788887
Q ss_pred CCCCCCCCCceeeeeCC-------CceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 292 PVAGPNGIDPMSMYSAG-------SEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 292 ~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
... .+.....|. ..+.+++|..|. .+++++.+=.|++|+|
T Consensus 275 S~R-----~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 275 SQR-----CFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKL 321 (609)
T ss_pred ccc-----ceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEec
Confidence 311 122223332 357888998776 4788888889999986
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=5.2e-21 Score=158.29 Aligned_cols=244 Identities=17% Similarity=0.279 Sum_probs=180.9
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCC------CCccceeeecCCCCCcccCCeeEEEeecCC
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGD------SSIEPVAVLNNSKSSEFCAPLTSFDWNEIE 138 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 138 (337)
..|.+.|.+++|.|... .|++++ + ++++|+++. ...+++.++.+|. ++|.|+++.+ +
T Consensus 291 ~s~~d~ir~l~~~~sep---------~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~-----gPVl~v~v~~-n 355 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEP---------VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHE-----GPVLCVVVPS-N 355 (577)
T ss_pred ecchhhhhhhhcCCCCC---------eEEEeccccchhhhhhcccCCccccceeeeEEEeccc-----CceEEEEecC-C
Confidence 56888899999999998 899988 5 999999943 2357888999999 9999999998 9
Q ss_pred CCeEEEeeCCCcEEEEeCCCc----------cchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeee
Q 038533 139 PKRIGTCSIDTTCTIWDIEKG----------VVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIY 207 (337)
Q Consensus 139 ~~~l~~~~~dg~i~v~d~~~~----------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 207 (337)
+..+.+|+.||+|+.|++... .....+.+|.+.++.++++ ....|++++.||++++|+...... ..+
T Consensus 356 ~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~--~~f 433 (577)
T KOG0642|consen 356 GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP--CTF 433 (577)
T ss_pred ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc--ccc
Confidence 999999999999999966421 1234567999999999999 677899999999999999987764 222
Q ss_pred cCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeec-------ccceeeEEEeCCCCCCeEEEEcCC
Q 038533 208 ESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELER-------HRACVNAIAWAPQSRRHICSVGDD 280 (337)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~l~~~~~d 280 (337)
..+...+.-.++.+-.....+.++...-+. -.++++.. ...+..+.. ....+..+.++|.+. +.+++..|
T Consensus 434 ~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~-~~~~~~ev-~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~hed 510 (577)
T KOG0642|consen 434 GEPKEHGYPLSVDRTSSRPAHSLASFRFGY-TSIDDMEV-VSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAHED 510 (577)
T ss_pred CCccccCCcceEeeccchhHhhhhhccccc-ccchhhhh-hhheeeccccCCCcccccCccceEEecCCCC-eeEecccC
Confidence 222223444566664312122222222221 22333332 111222211 123578899999998 99999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 281 SQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 281 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
+.|+++|.. . +........|...++++++.|+|.+|++++.|+.+++|++
T Consensus 511 ~~Ir~~dn~--~-----~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 511 RSIRFFDNK--T-----GKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred Cceeccccc--c-----cccchheeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 999999998 3 2234467789999999999999999999999999999985
No 178
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.87 E-value=1.3e-20 Score=149.66 Aligned_cols=205 Identities=17% Similarity=0.268 Sum_probs=166.6
Q ss_pred eeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc-------chhhhhccCCceeEEEeCC--CcEEEE
Q 038533 115 AVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV-------VETQLIAHDKEVYDICWGE--ARVFAS 185 (337)
Q Consensus 115 ~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~~~~v~~~~~~~--~~~l~~ 185 (337)
-.+.+|+ ++|..++|+|.+.+.||+|++|.+|.||.+..+. ++..+.+|...|--++|+| .+.|++
T Consensus 75 P~v~GHt-----~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLls 149 (472)
T KOG0303|consen 75 PLVCGHT-----APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLS 149 (472)
T ss_pred CCccCcc-----ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhh
Confidence 3456777 9999999999999999999999999999987653 4556779999999999994 889999
Q ss_pred EcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccc-eeeEE
Q 038533 186 VSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRA-CVNAI 264 (337)
Q Consensus 186 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~-~v~~~ 264 (337)
++.|.+|.+||+.+++....+. |...|+++.|+. +|.+|++.+.|.. |+|||.++ ++.+..-.+|.+ ....+
T Consensus 150 ag~Dn~v~iWnv~tgeali~l~----hpd~i~S~sfn~-dGs~l~TtckDKk-vRv~dpr~-~~~v~e~~~heG~k~~Ra 222 (472)
T KOG0303|consen 150 AGSDNTVSIWNVGTGEALITLD----HPDMVYSMSFNR-DGSLLCTTCKDKK-VRVIDPRR-GTVVSEGVAHEGAKPARA 222 (472)
T ss_pred ccCCceEEEEeccCCceeeecC----CCCeEEEEEecc-CCceeeeecccce-eEEEcCCC-CcEeeecccccCCCccee
Confidence 9999999999999998554432 789999999998 9999999999999 99999999 666777677765 34567
Q ss_pred EeCCCCCCeEEEEc---CCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEE-cCCcEEEEeC
Q 038533 265 AWAPQSRRHICSVG---DDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIA-FSNKMQLLKV 337 (337)
Q Consensus 265 ~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~l 337 (337)
.|-.++. ++.||- .+.++-+||.. .+..|. .+........|.---|.||...+..++ .|+.|+-|.+
T Consensus 223 ifl~~g~-i~tTGfsr~seRq~aLwdp~--nl~eP~---~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEi 293 (472)
T KOG0303|consen 223 IFLASGK-IFTTGFSRMSERQIALWDPN--NLEEPI---ALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEI 293 (472)
T ss_pred EEeccCc-eeeeccccccccceeccCcc--cccCcc---eeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEe
Confidence 7888887 666664 57889999998 766542 123334556677777889888777776 7999998864
No 179
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=1.4e-19 Score=160.03 Aligned_cols=296 Identities=17% Similarity=0.186 Sum_probs=196.5
Q ss_pred CceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-
Q 038533 22 YPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG- 98 (337)
Q Consensus 22 ~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~- 98 (337)
.+...+.|+ ...++++.. ...|+||||+....--.. .........|+.+.+-.+.. -.++.+|+
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~----r~~i~vwd~e~~~~l~~F--~n~~~~~t~Vs~l~liNe~D-------~aLlLtas~ 1131 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADD----RERIRVWDWEKGRLLNGF--DNGAFPDTRVSDLELINEQD-------DALLLTASS 1131 (1387)
T ss_pred CCCceeeecCCCceeEEcCC----cceEEEEecccCceeccc--cCCCCCCCccceeeeecccc-------hhheeeecc
Confidence 356677888 777888774 789999999866532111 11123346788888854332 13666665
Q ss_pred C-eEEEEecCCC---Cccceeee---cCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh-ccCC
Q 038533 99 D-FLRLWDVGDS---SIEPVAVL---NNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI-AHDK 170 (337)
Q Consensus 99 ~-~v~vw~~~~~---~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~ 170 (337)
| .|+||+--.. +.+.+.-. .++..... +.=.-++|....| +|++++.-..|+|||.........+. +.+.
T Consensus 1132 dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r-~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1132 DGVIRIWKDYADKWKKPELVTAWSSLSDQLPGAR-GTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQVVADIPYGSST 1209 (1387)
T ss_pred CceEEEecccccccCCceeEEeeccccccCccCC-CCCeeeehhhhCC-eEEecCCeeEEEEEecccceeEeecccCCCc
Confidence 6 9999975432 22333222 22211111 1124567877444 45555557899999998877666554 3455
Q ss_pred ceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCC--ceEEEeecCCCcEEEEEEecCCEEEEEECCC
Q 038533 171 EVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTP--LLRLAWNKQDLRYMATILMDSNKVVILDIRS 246 (337)
Q Consensus 171 ~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~ 246 (337)
.|+++.-+ .++.+++|..||.|++||.|.......+.....|+.. |..+.+.+..-..|++|+.+|. |++||+|.
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~ 1288 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRM 1288 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEeccc
Confidence 67888777 4799999999999999999987653333333335544 9999998833335999999999 99999998
Q ss_pred C-CCCeEEeeccc--c-eeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCc
Q 038533 247 P-TLPVAELERHR--A-CVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPD 322 (337)
Q Consensus 247 ~-~~~~~~~~~~~--~-~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 322 (337)
. ......+..|. + ..+++..+++.+ ++|+|+. +.|+||++....+... ...+.-+....+.+.+++|||....
T Consensus 1289 ~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~-k~n~~F~~q~~gs~scL~FHP~~~l 1365 (1387)
T KOG1517|consen 1289 SSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNII-KYNPGFMGQRIGSVSCLAFHPHRLL 1365 (1387)
T ss_pred CcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhccc-ccCcccccCcCCCcceeeecchhHh
Confidence 3 33233334443 3 489999999999 9999998 9999999983221110 0001112223456799999999988
Q ss_pred eEEEEcCCcEEEEe
Q 038533 323 WLAIAFSNKMQLLK 336 (337)
Q Consensus 323 l~~~~~d~~i~iw~ 336 (337)
+++++.|..|.||.
T Consensus 1366 lAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1366 LAAGSADSTVSIYS 1379 (1387)
T ss_pred hhhccCCceEEEee
Confidence 88888999999985
No 180
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.87 E-value=2.9e-19 Score=140.92 Aligned_cols=236 Identities=15% Similarity=0.234 Sum_probs=176.6
Q ss_pred CCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCC
Q 038533 70 PYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSID 148 (337)
Q Consensus 70 ~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 148 (337)
...++.+.|..+.. +|..|+. ..++|+..... ++-....+ . ..|..+-|+. .++|..+.+
T Consensus 5 ~~ti~~~~~Nqd~~---------~lsvGs~~Gyk~~~~~~~~-k~~~~~~~-~-----~~IvEmLFSS---SLvaiV~~~ 65 (391)
T KOG2110|consen 5 KPTINFIGFNQDST---------LLSVGSKDGYKIFSCSPFE-KCFSKDTE-G-----VSIVEMLFSS---SLVAIVSIK 65 (391)
T ss_pred Ccceeeeeecccee---------EEEccCCCceeEEecCchH-HhhcccCC-C-----eEEEEeeccc---ceeEEEecC
Confidence 34577777999988 9999986 89999987753 11111111 1 4566677754 566666554
Q ss_pred C--cEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCC
Q 038533 149 T--TCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDL 226 (337)
Q Consensus 149 g--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 226 (337)
. .+++++++.+..+..+. ....|.+|.++- +.|+++-.+ .|+|||++..+....+...+.+...+.++.+++ .+
T Consensus 66 qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr-~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n 141 (391)
T KOG2110|consen 66 QPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR-KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-AN 141 (391)
T ss_pred CCceEEEEEcccCceEEEEe-cCCceEEEEEcc-ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCC-CC
Confidence 4 49999998887777665 456799999974 345555544 499999999998888776655666777777776 56
Q ss_pred cEEEE-EEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCc-EEEEeCCCCCCCCCCCCCceee
Q 038533 227 RYMAT-ILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQ-AFIWELPLPPVAGPNGIDPMSM 304 (337)
Q Consensus 227 ~~l~~-~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~ 304 (337)
.+++. ++.+.+.|.+||..+ -+++..+..|.+++.+++|+++|. +|||+++.|+ |||+.+..++ ....+
T Consensus 142 ~ylAyp~s~t~GdV~l~d~~n-l~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~-------kl~eF 212 (391)
T KOG2110|consen 142 CYLAYPGSTTSGDVVLFDTIN-LQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQ-------KLYEF 212 (391)
T ss_pred ceEEecCCCCCceEEEEEccc-ceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCcc-------Eeeee
Confidence 67765 344444599999998 678889999999999999999999 9999999996 8899998332 33333
Q ss_pred eeC--CCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 305 YSA--GSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 305 ~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
..- ...|.+++|+|++++|.+++..++|+||+|
T Consensus 213 RRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 213 RRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred eCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 322 346899999999999999999999999986
No 181
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.86 E-value=3.5e-18 Score=143.88 Aligned_cols=265 Identities=11% Similarity=0.135 Sum_probs=170.0
Q ss_pred CcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe-C-C-eEEEEecCC-CCccceeeec
Q 038533 43 YTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS-G-D-FLRLWDVGD-SSIEPVAVLN 118 (337)
Q Consensus 43 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~-~-~-~v~vw~~~~-~~~~~~~~~~ 118 (337)
+++.|.+|+++.. +.+..... ..+.+....+.++|+++ +|+++ . + .|.+|++.. +.........
T Consensus 10 ~~~~I~~~~~~~~-g~l~~~~~--~~~~~~~~~l~~spd~~---------~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~ 77 (330)
T PRK11028 10 ESQQIHVWNLNHE-GALTLLQV--VDVPGQVQPMVISPDKR---------HLYVGVRPEFRVLSYRIADDGALTFAAESP 77 (330)
T ss_pred CCCCEEEEEECCC-CceeeeeE--EecCCCCccEEECCCCC---------EEEEEECCCCcEEEEEECCCCceEEeeeec
Confidence 4899999999643 23222111 33456678899999998 66554 3 3 899999973 3322222222
Q ss_pred CCCCCcccCCeeEEEeecCCCCeEEEee-CCCcEEEEeCCCcc-c---hhhhhccCCceeEEEeC-CCcEEEE-EcCCCe
Q 038533 119 NSKSSEFCAPLTSFDWNEIEPKRIGTCS-IDTTCTIWDIEKGV-V---ETQLIAHDKEVYDICWG-EARVFAS-VSADGS 191 (337)
Q Consensus 119 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~-~---~~~~~~~~~~v~~~~~~-~~~~l~~-~~~dg~ 191 (337)
. . .....++|+| +++++++++ .++.|.+|++++.. . +..+. +......++++ +++++++ ...++.
T Consensus 78 ~-~-----~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~ 149 (330)
T PRK11028 78 L-P-----GSPTHISTDH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDR 149 (330)
T ss_pred C-C-----CCceEEEECC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCE
Confidence 1 1 3456899999 888777766 48899999996432 1 22222 23346778888 6777654 555799
Q ss_pred EEEEECCCCCCcee----eecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCC-CC--CeEEeecc------c
Q 038533 192 VRIFDLRDKEHSTI----IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP-TL--PVAELERH------R 258 (337)
Q Consensus 192 i~iwd~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~-~~--~~~~~~~~------~ 258 (337)
|.+||+.+...... .... ........+.|+| ++++++++......|.+||+... +. .+..+..+ .
T Consensus 150 v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~ 227 (330)
T PRK11028 150 IRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT 227 (330)
T ss_pred EEEEEECCCCcccccCCCceec-CCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC
Confidence 99999986432211 0111 1124467899999 99999888874445999999742 11 22222211 1
Q ss_pred ceeeEEEeCCCCCCeEEEEc-CCCcEEEEeCCCCCCCCCCCCCceeeeeC---CCceeEEEEccCCCceEEEEc-CCcEE
Q 038533 259 ACVNAIAWAPQSRRHICSVG-DDSQAFIWELPLPPVAGPNGIDPMSMYSA---GSEINQLQWSPAQPDWLAIAF-SNKMQ 333 (337)
Q Consensus 259 ~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~-d~~i~ 333 (337)
.....+.++|+++ +++++. .++.|.+|++. .... .....++ ......++++|+|++|+++.. ++.|.
T Consensus 228 ~~~~~i~~~pdg~-~lyv~~~~~~~I~v~~i~--~~~~-----~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~ 299 (330)
T PRK11028 228 RWAADIHITPDGR-HLYACDRTASLISVFSVS--EDGS-----VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHIS 299 (330)
T ss_pred ccceeEEECCCCC-EEEEecCCCCeEEEEEEe--CCCC-----eEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEE
Confidence 1234688999999 777765 47899999997 3111 1122222 234578999999999998775 89999
Q ss_pred EEeC
Q 038533 334 LLKV 337 (337)
Q Consensus 334 iw~l 337 (337)
+|++
T Consensus 300 v~~~ 303 (330)
T PRK11028 300 VYEI 303 (330)
T ss_pred EEEE
Confidence 9974
No 182
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=5.3e-19 Score=131.99 Aligned_cols=244 Identities=13% Similarity=0.126 Sum_probs=170.7
Q ss_pred CCccceee-eeCCCceeEEEEecceEEEeeeeccCcceEEEEEecCCCcceecCCCcC---CCC-----CCCCeEEEecC
Q 038533 10 LRSENSVT-HESPYPLYAMAVCGQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLS---FDH-----PYPPTKLMFDP 80 (337)
Q Consensus 10 ~~~~~~~~-~~~~~~v~~~~~s~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~---~~~-----~~~i~~i~~~~ 80 (337)
.-+.++.. -.|+++|+.++|...+|++|+ ||.|+=|.|....+....+..+. ..| --.|+++...|
T Consensus 50 ~gk~~iv~eqahdgpiy~~~f~d~~Lls~g-----dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP 124 (325)
T KOG0649|consen 50 PGKLKIVPEQAHDGPIYYLAFHDDFLLSGG-----DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP 124 (325)
T ss_pred CCCcceeeccccCCCeeeeeeehhheeecc-----CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEecc
Confidence 33455665 457999999999988999998 99999999987654322211111 111 13588999988
Q ss_pred CCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCc
Q 038533 81 NSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKG 159 (337)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~ 159 (337)
... .+|.+|+| .+.-||++++ +..+.+++|+ +.|.++.--. ....+++|++||++++||++++
T Consensus 125 ~en--------Si~~AgGD~~~y~~dlE~G--~i~r~~rGHt-----DYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 125 SEN--------SILFAGGDGVIYQVDLEDG--RIQREYRGHT-----DYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQ 188 (325)
T ss_pred CCC--------cEEEecCCeEEEEEEecCC--EEEEEEcCCc-----ceeeeeeecc-cCcceeecCCCccEEEEecccc
Confidence 766 47777888 9999999999 7889999999 9999998754 5678999999999999999999
Q ss_pred cchhhhhc---------c-CCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEE
Q 038533 160 VVETQLIA---------H-DKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYM 229 (337)
Q Consensus 160 ~~~~~~~~---------~-~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 229 (337)
+.+..+.. | ...|.+++.+ ..+++.|+ ...+.+|.++..+....+... .++..+.| ..+.+
T Consensus 189 k~v~~ie~yk~~~~lRp~~g~wigala~~-edWlvCGg-Gp~lslwhLrsse~t~vfpip----a~v~~v~F---~~d~v 259 (325)
T KOG0649|consen 189 KHVSMIEPYKNPNLLRPDWGKWIGALAVN-EDWLVCGG-GPKLSLWHLRSSESTCVFPIP----ARVHLVDF---VDDCV 259 (325)
T ss_pred ceeEEeccccChhhcCcccCceeEEEecc-CceEEecC-CCceeEEeccCCCceEEEecc----cceeEeee---ecceE
Confidence 87665542 1 2235555554 55666655 467999999999876665433 67888888 55677
Q ss_pred EEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEE
Q 038533 230 ATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIW 286 (337)
Q Consensus 230 ~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 286 (337)
++++..+. +.-|.+.. ......+.......+..|+..--.+|..++...++.|+
T Consensus 260 l~~G~g~~-v~~~~l~G--vl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 260 LIGGEGNH-VQSYTLNG--VLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EEeccccc-eeeeeecc--EEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 77776666 88888763 22223333333445555543322256666666666665
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=7.9e-18 Score=146.73 Aligned_cols=284 Identities=20% Similarity=0.353 Sum_probs=209.7
Q ss_pred eeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCC-CCCCCeEEEe-cCCCCcccCcCCcc
Q 038533 17 THESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFD-HPYPPTKLMF-DPNSSSRKSSSNRH 92 (337)
Q Consensus 17 ~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~-~~~~i~~i~~-~~~~~~~~~~~~~~ 92 (337)
...+...+.++.|. +..++.++. ++.+.+|+.......... + .. +...+..+.+ ++++. .
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~--------~ 124 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSS----DGTIKLWDLDNGEKLIKS---L-EGLHDSSVSKLALSSPDGN--------S 124 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecC----CCcEEEEEcCCCceeEEE---E-eccCCCceeeEEEECCCcc--------e
Confidence 34667889999999 777887776 999999998877522221 1 22 2246777777 66664 2
Q ss_pred EEEEe-C-C-eEEEEecCC-CCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC-CCcEEEEeCCCccchhhhhc
Q 038533 93 LLASS-G-D-FLRLWDVGD-SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI-DTTCTIWDIEKGVVETQLIA 167 (337)
Q Consensus 93 ~l~~~-~-~-~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~~ 167 (337)
+++.. . + .+.+|+... . .....+..|. ..|..++|+| ++..+++++. |+.+++|++..+..+..+..
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~-----~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPG--KLIRTLEGHS-----ESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196 (466)
T ss_pred EEeccCCCCccEEEEEecCCC--eEEEEEecCc-----ccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeecc
Confidence 44443 3 5 999999998 4 5777788887 8899999999 8888888885 99999999998888888888
Q ss_pred cCCceeEEEeC-CCc-EEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECC
Q 038533 168 HDKEVYDICWG-EAR-VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR 245 (337)
Q Consensus 168 ~~~~v~~~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~ 245 (337)
|...+.+++|+ ++. .+++++.|+.+++||...+........ .|.... ...|+| ++.++++++.++. +++||.+
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~--~~~~~~-~~~~~~-~~~~~~~~~~d~~-~~~~~~~ 271 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLS--GHSDSV-VSSFSP-DGSLLASGSSDGT-IRLWDLR 271 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecC--CCCcce-eEeECC-CCCEEEEecCCCc-EEEeeec
Confidence 99999999999 555 555559999999999885554332222 233443 227888 7788889999998 9999999
Q ss_pred CCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceee--eeCCCceeEEEEccCCCce
Q 038533 246 SPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSM--YSAGSEINQLQWSPAQPDW 323 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l 323 (337)
.....+..+..|...+.++.|.|++. .+++++.|+.+.+|+.. .... .... ..|...+..+.|.+++..+
T Consensus 272 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (466)
T COG2319 272 SSSSLLRTLSGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLE--TGKL-----LSSLTLKGHEGPVSSLSFSPDGSLL 343 (466)
T ss_pred CCCcEEEEEecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcC--CCce-----EEEeeecccCCceEEEEECCCCCEE
Confidence 75543444467888999999999887 77778888999999887 3211 2222 3677789999994332445
Q ss_pred EEE-EcCCcEEEEeC
Q 038533 324 LAI-AFSNKMQLLKV 337 (337)
Q Consensus 324 ~~~-~~d~~i~iw~l 337 (337)
+.+ ..|+.+.+|++
T Consensus 344 ~~~~~~d~~~~~~~~ 358 (466)
T COG2319 344 VSGGSDDGTIRLWDL 358 (466)
T ss_pred EEeecCCCcEEeeec
Confidence 555 57888888864
No 184
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.86 E-value=5.4e-19 Score=136.91 Aligned_cols=227 Identities=18% Similarity=0.220 Sum_probs=172.2
Q ss_pred CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe
Q 038533 20 SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS 97 (337)
Q Consensus 20 ~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~ 97 (337)
...+|+|.+|+ +..+|++.+ ++.|.||....... .+....+ ..|...|++|+|+|..+ .|++|
T Consensus 9 ~~~pitchAwn~drt~iAv~~~----~~evhiy~~~~~~~-w~~~htl-s~Hd~~vtgvdWap~sn---------rIvtc 73 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPN----NHEVHIYSMLGADL-WEPAHTL-SEHDKIVTGVDWAPKSN---------RIVTC 73 (361)
T ss_pred ccCceeeeeecCCCceEEeccC----CceEEEEEecCCCC-ceeceeh-hhhCcceeEEeecCCCC---------ceeEc
Confidence 36899999999 888999986 88999998876551 2222233 78999999999999998 88888
Q ss_pred C-C-eEEEEec-CCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccch----hhhhccCC
Q 038533 98 G-D-FLRLWDV-GDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVE----TQLIAHDK 170 (337)
Q Consensus 98 ~-~-~v~vw~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~~~ 170 (337)
+ | .-+||.. ..+..++.-.+..+. ...+++.|+| ..+.|++|+....|.||-.+....- +.-+.+..
T Consensus 74 s~drnayVw~~~~~~~WkptlvLlRiN-----rAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirS 147 (361)
T KOG1523|consen 74 SHDRNAYVWTQPSGGTWKPTLVLLRIN-----RAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS 147 (361)
T ss_pred cCCCCccccccCCCCeeccceeEEEec-----cceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCcccc
Confidence 8 6 9999998 666666666777776 8999999999 9999999999999999988765522 22345678
Q ss_pred ceeEEEeC-CCcEEEEEcCCCeEEEEECCCCC-----Cc----------eeeecCCCCCCCceEEEeecCCCcEEEEEEe
Q 038533 171 EVYDICWG-EARVFASVSADGSVRIFDLRDKE-----HS----------TIIYESPQPDTPLLRLAWNKQDLRYMATILM 234 (337)
Q Consensus 171 ~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~-----~~----------~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 234 (337)
.|.++.|+ ++-+|++|+.|+.++++..--.. .. ..+.+.....+.+..+.|+| +|..|+-.+.
T Consensus 148 tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~H 226 (361)
T KOG1523|consen 148 TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGH 226 (361)
T ss_pred ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecC
Confidence 89999999 67788999999999998642111 00 01111113457899999999 9999999999
Q ss_pred cCCEEEEEECCCCCCCeEEeecccceeeEEEeCCC
Q 038533 235 DSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQ 269 (337)
Q Consensus 235 d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (337)
|.. +.+-|...+.+.+.......-+..++.|-.+
T Consensus 227 ds~-v~~~da~~p~~~v~~~~~~~lP~ls~~~ise 260 (361)
T KOG1523|consen 227 DST-VSFVDAAGPSERVQSVATAQLPLLSVSWISE 260 (361)
T ss_pred CCc-eEEeecCCCchhccchhhccCCceeeEeecC
Confidence 999 9999988765444444333356666666544
No 185
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=7.6e-21 Score=164.07 Aligned_cols=239 Identities=18% Similarity=0.305 Sum_probs=180.3
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT 144 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 144 (337)
.+|-.+|+|+.|...+. ++.+|+| .++||...+. .++..+.||. +.|+.++.+. +..++++
T Consensus 187 lgH~naVyca~fDrtg~---------~Iitgsdd~lvKiwS~et~--~~lAs~rGhs-----~ditdlavs~-~n~~iaa 249 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGR---------YIITGSDDRLVKIWSMETA--RCLASCRGHS-----GDITDLAVSS-NNTMIAA 249 (1113)
T ss_pred Hhhhhheeeeeeccccc---------eEeecCccceeeeeeccch--hhhccCCCCc-----cccchhccch-hhhhhhh
Confidence 68999999999999998 9999996 9999999888 8999999999 9999999987 8889999
Q ss_pred eeCCCcEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECC-CCCCce--------------eeec-
Q 038533 145 CSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLR-DKEHST--------------IIYE- 208 (337)
Q Consensus 145 ~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~--------------~~~~- 208 (337)
++.|..|++|.+.++.++..+.+|.+.|++++|+|-. +.+.||++++||.+ ...... .+..
T Consensus 250 aS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~ 326 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFEN 326 (1113)
T ss_pred cccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccc
Confidence 9999999999999999999999999999999999643 77889999999998 111000 0000
Q ss_pred -----------CCCCCCCceEEEeecCCCcEEEEEE-----------ecCCEEEEEECCCCCCCeEEeecccceeeEEEe
Q 038533 209 -----------SPQPDTPLLRLAWNKQDLRYMATIL-----------MDSNKVVILDIRSPTLPVAELERHRACVNAIAW 266 (337)
Q Consensus 209 -----------~~~~~~~i~~~~~~~~~~~~l~~~~-----------~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 266 (337)
....+-...+++|.. ..-.+++.+ .+-. +.+|++.+ +...+.+.+|...+..+.+
T Consensus 327 ~~~~f~Tgs~d~ea~n~e~~~l~~~~-~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~-g~l~H~l~ghsd~~yvLd~ 403 (1113)
T KOG0644|consen 327 NGDRFLTGSRDGEARNHEFEQLAWRS-NLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYT-GQLLHNLMGHSDEVYVLDV 403 (1113)
T ss_pred cccccccccCCcccccchhhHhhhhc-cceEEEeccccccccceeeeeeeE-eeeeeccc-chhhhhhcccccceeeeee
Confidence 000001112222222 222222222 2233 77888887 6677888899999999999
Q ss_pred CCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEE
Q 038533 267 APQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLL 335 (337)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 335 (337)
+|-++....+++.||...|||+-.+. ...........+.+.+||++|..++....-|.++|.
T Consensus 404 Hpfn~ri~msag~dgst~iwdi~eg~-------pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 404 HPFNPRIAMSAGYDGSTIIWDIWEGI-------PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred cCCCcHhhhhccCCCceEeeecccCC-------cceeeecccceeeccccCCCCceEecCCCCCceEEe
Confidence 99988677899999999999998333 122222224567778999999877766667887775
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.2e-19 Score=140.96 Aligned_cols=197 Identities=16% Similarity=0.186 Sum_probs=151.0
Q ss_pred eEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeec
Q 038533 130 TSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208 (337)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 208 (337)
..++|+. ++..+++|+.||++|+|+..+...+.....|...|.++.|+ +++.|++.+.| ..++|+.+++........
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 5789998 99999999999999999988888788888899999999999 89999999999 999999999854433322
Q ss_pred CCCCCCCceEEEeecCCC----cEEEEEEecCCEEEEEECCCCCC----CeEEeecccceeeEEEeCCCCCCeEEEEcCC
Q 038533 209 SPQPDTPLLRLAWNKQDL----RYMATILMDSNKVVILDIRSPTL----PVAELERHRACVNAIAWAPQSRRHICSVGDD 280 (337)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~----~~l~~~~~d~~~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 280 (337)
...+..+..+.|+. ++ -++++.-..+..|..||+..... +.+........|++++.+++|+ +++.|+.|
T Consensus 226 -~~k~~~~~~cRF~~-d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGk-f~AlGT~d 302 (398)
T KOG0771|consen 226 -FSKDEMFSSCRFSV-DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGK-FLALGTMD 302 (398)
T ss_pred -cccchhhhhceecc-cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCc-EEEEeccC
Confidence 23445677788876 44 24444444444477777654332 2222222345799999999999 99999999
Q ss_pred CcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 281 SQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 281 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
|.|.|++.. ++.. ....-..|...|+.+.|+|+.+++++.+.|....|..|
T Consensus 303 GsVai~~~~--~lq~----~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 303 GSVAIYDAK--SLQR----LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred CcEEEEEec--eeee----eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 999999998 5332 12234468899999999999999999999988877653
No 187
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=1e-19 Score=152.99 Aligned_cols=241 Identities=20% Similarity=0.327 Sum_probs=177.4
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCC
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGD 108 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~ 108 (337)
..++|+--. +..|.|-||++........-... ..-....|+.+.|.|-.. +.||.++| .|++|.+..
T Consensus 591 ~~rvAVPL~--g~gG~iai~el~~PGrLPDgv~p-~l~Ngt~vtDl~WdPFD~--------~rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 591 NKRVAVPLA--GSGGVIAIYELNEPGRLPDGVMP-GLFNGTLVTDLHWDPFDD--------ERLAVATDDGQINLWRLTA 659 (1012)
T ss_pred cceEEEEec--CCCceEEEEEcCCCCCCCccccc-ccccCceeeecccCCCCh--------HHeeecccCceEEEEEecc
Confidence 455554221 12799999999865542221000 123456799999999776 68888875 999999976
Q ss_pred CC-----ccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcE
Q 038533 109 SS-----IEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARV 182 (337)
Q Consensus 109 ~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 182 (337)
+. ..+...+..|. ..|+++.|+|...+.|++++.|-+|++||+.+++....+.+|.+.|.+++|+ +|+.
T Consensus 660 ~gl~e~~~tPe~~lt~h~-----eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~ 734 (1012)
T KOG1445|consen 660 NGLPENEMTPEKILTIHG-----EKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRR 734 (1012)
T ss_pred CCCCcccCCcceeeeccc-----ceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcc
Confidence 53 34556777787 8999999999888999999999999999999999999999999999999999 8999
Q ss_pred EEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC---EEEEEECCCCC-CCeEEeeccc
Q 038533 183 FASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN---KVVILDIRSPT-LPVAELERHR 258 (337)
Q Consensus 183 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~---~i~i~d~~~~~-~~~~~~~~~~ 258 (337)
+++.+.||+|++|..++.+....-...+. ...--.+.|.- +++++++.+.|.. +|.+||..+.. .++.+..-..
T Consensus 735 ~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv-gtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv 812 (1012)
T KOG1445|consen 735 IATVCKDGTLRVYEPRSREQPVYEGKGPV-GTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV 812 (1012)
T ss_pred eeeeecCceEEEeCCCCCCCccccCCCCc-cCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc
Confidence 99999999999999998764332222211 23445677877 9999999887753 48889887643 4444332111
Q ss_pred c-eeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 259 A-CVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 259 ~-~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
. .+.--.+.+|...++++|-.|..|.+|.+-
T Consensus 813 aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 813 APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred cCccccccccCCCceEEEecCCCceEEEEEec
Confidence 1 112223456666588899999999999987
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=3.7e-20 Score=153.29 Aligned_cols=247 Identities=14% Similarity=0.161 Sum_probs=182.4
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCC----CcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCcc
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPE----SLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRH 92 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~----~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~ 92 (337)
.|.+.|++++|+ ...|++++- ||.|.+|+++.. ...+.....+ .+|.++|.|++..+++.
T Consensus 292 s~~d~ir~l~~~~sep~lit~se----d~~lk~WnLqk~~~s~~~~~epi~tf-raH~gPVl~v~v~~n~~--------- 357 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASE----DGTLKLWNLQKAKKSAEKDVEPILTF-RAHEGPVLCVVVPSNGE--------- 357 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEecc----ccchhhhhhcccCCccccceeeeEEE-ecccCceEEEEecCCce---------
Confidence 457789999999 889999995 999999999431 1222222233 68999999999999998
Q ss_pred EEEEeC-C-eEEEEecCCCC--------ccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccch
Q 038533 93 LLASSG-D-FLRLWDVGDSS--------IEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVE 162 (337)
Q Consensus 93 ~l~~~~-~-~v~vw~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 162 (337)
.+.+|+ | +|+.|++.... ......+.||. ..|+.+++|+ ..+.|++++.||+++.|+.....+
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ght-----davw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~- 430 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHT-----DAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESP- 430 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcccccCcchhccceeccc-----cceeeeeecc-cccceeeecCCceEEeeccCCcCc-
Confidence 888888 7 99999876321 14456778888 9999999998 888999999999999999866655
Q ss_pred hhhhc--cCCceeEEEeCC--CcEEEEEcCCCeEEEEECCCCCCceeeecC----CCCCCCceEEEeecCCCcEEEEEEe
Q 038533 163 TQLIA--HDKEVYDICWGE--ARVFASVSADGSVRIFDLRDKEHSTIIYES----PQPDTPLLRLAWNKQDLRYMATILM 234 (337)
Q Consensus 163 ~~~~~--~~~~v~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~l~~~~~ 234 (337)
.++.. ..+...++.+-. ..+.++...-+.-.++|+........+... +.....+..+.++| +..+.+++..
T Consensus 431 ~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~he 509 (577)
T KOG0642|consen 431 CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHE 509 (577)
T ss_pred cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEeccc
Confidence 33321 223345555552 223333333333334444444322222111 11224577888998 8899999999
Q ss_pred cCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCC
Q 038533 235 DSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL 290 (337)
Q Consensus 235 d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 290 (337)
|+. |+++|..+ +.++.....|...++++++.|+|. +|++++.|+.+++|.+..
T Consensus 510 d~~-Ir~~dn~~-~~~l~s~~a~~~svtslai~~ng~-~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 510 DRS-IRFFDNKT-GKILHSMVAHKDSVTSLAIDPNGP-YLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred CCc-eecccccc-cccchheeeccceecceeecCCCc-eEEeecCCceeehhhccc
Confidence 999 99999998 778888999999999999999999 999999999999999973
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.84 E-value=5.4e-17 Score=128.26 Aligned_cols=232 Identities=16% Similarity=0.237 Sum_probs=170.6
Q ss_pred CceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-
Q 038533 22 YPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG- 98 (337)
Q Consensus 22 ~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~- 98 (337)
..+..+.|+ ...|.+|+. ...++|+.+....-... ......|.-+-|+.. ++|..+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~-----~Gyk~~~~~~~~k~~~~-----~~~~~~IvEmLFSSS-----------LvaiV~~ 64 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSK-----DGYKIFSCSPFEKCFSK-----DTEGVSIVEMLFSSS-----------LVAIVSI 64 (391)
T ss_pred cceeeeeeccceeEEEccCC-----CceeEEecCchHHhhcc-----cCCCeEEEEeecccc-----------eeEEEec
Confidence 346666688 677888884 44588877765542221 223344556667654 555444
Q ss_pred -C--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhc---cCCce
Q 038533 99 -D--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIA---HDKEV 172 (337)
Q Consensus 99 -~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~v 172 (337)
+ .+++++++.+. .++.+.-. .+|.++.++. +.|+++-++ .|+|||+++.+.+.++.. +...+
T Consensus 65 ~qpr~Lkv~~~Kk~~--~ICe~~fp------t~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl 132 (391)
T KOG2110|consen 65 KQPRKLKVVHFKKKT--TICEIFFP------TSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGL 132 (391)
T ss_pred CCCceEEEEEcccCc--eEEEEecC------CceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccce
Confidence 3 79999999884 33333322 6899999854 677777654 499999999998888763 34446
Q ss_pred eEEEeC-CCcEEEEEc--CCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCC
Q 038533 173 YDICWG-EARVFASVS--ADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTL 249 (337)
Q Consensus 173 ~~~~~~-~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~ 249 (337)
.++..+ .+.+++.-+ ..|.|.+||..+-+....+. .|++.+.+++|++ +|.+||+++..|+.|+||.+.+ ++
T Consensus 133 ~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~---aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~-G~ 207 (391)
T KOG2110|consen 133 CALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTIN---AHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPE-GQ 207 (391)
T ss_pred EeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEE---ecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCC-cc
Confidence 666666 466777533 36889999999887555544 5899999999999 9999999999999999999988 66
Q ss_pred CeEEeeccc--ceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCC
Q 038533 250 PVAELERHR--ACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPP 292 (337)
Q Consensus 250 ~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 292 (337)
.+.+++... ..|.+++|+|+++ +|++.+..++|++|.++...
T Consensus 208 kl~eFRRG~~~~~IySL~Fs~ds~-~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 208 KLYEFRRGTYPVSIYSLSFSPDSQ-FLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EeeeeeCCceeeEEEEEEECCCCC-eEEEecCCCeEEEEEecccc
Confidence 677775332 3688999999999 99999999999999998433
No 190
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.83 E-value=1.3e-18 Score=143.64 Aligned_cols=264 Identities=14% Similarity=0.179 Sum_probs=177.7
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEe-cCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCcc-EE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSF-EPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRH-LL 94 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~-~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~-~l 94 (337)
.+..-|.|+.|+ ...+.++. |..+.+|.- ..+..+... -.+..|....+ +.+.+...++... ++
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-----Dh~~~~~~~~~~~s~~~~~------~p~df~pt~~h-~~~rs~~~g~~~d~~~ 79 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-----DHQIFKWSDVSRDSVEVAK------LPDDFVPTDMH-LGGRSSGGGKGSDTLL 79 (737)
T ss_pred ccceeEEeecccccceEEEecc-----CceEEEeecccchhhhhhh------CCcccCCcccc-ccccccCCCCCcceEE
Confidence 344556788998 44555554 777777642 222222111 11111111111 3333222233333 45
Q ss_pred EEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCcee
Q 038533 95 ASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVY 173 (337)
Q Consensus 95 ~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~ 173 (337)
++.+| .+.+.+-.. +....+..|. +.+.+-.|+| +|.-|+++++||.|++|. ++|-...++.....+|+
T Consensus 80 i~s~DGkf~il~k~~---rVE~sv~AH~-----~A~~~gRW~~-dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~ 149 (737)
T KOG1524|consen 80 ICSNDGRFVILNKSA---RVERSISAHA-----AAISSGRWSP-DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIR 149 (737)
T ss_pred EEcCCceEEEecccc---hhhhhhhhhh-----hhhhhcccCC-CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeE
Confidence 55556 777776443 3555677777 9999999999 999999999999999998 46666666666778999
Q ss_pred EEEeC-C-CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCe
Q 038533 174 DICWG-E-ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPV 251 (337)
Q Consensus 174 ~~~~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~ 251 (337)
|++|. + .+.+++.+ +.+.+=-+.... .+..-..|++-|.++.|++ ..+++++|++|-. .++||.. +.++
T Consensus 150 c~~W~p~S~~vl~c~g--~h~~IKpL~~n~---k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~k-fKvWD~~--G~~L 220 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQG--GHISIKPLAANS---KIIRWRAHDGLVLSLSWST-QSNIIASGGEDFR-FKIWDAQ--GANL 220 (737)
T ss_pred EEEECCCCCceEEecC--CeEEEeeccccc---ceeEEeccCcEEEEeecCc-cccceeecCCcee-EEeeccc--Cccc
Confidence 99999 4 34444433 455554554433 2222335889999999999 9999999999998 9999976 5678
Q ss_pred EEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCc
Q 038533 252 AELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNK 331 (337)
Q Consensus 252 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 331 (337)
..-..|..+|++++|.|+ + .++.++.. ++| ++ + ...+.|..++|||||..+..++..|.
T Consensus 221 f~S~~~ey~ITSva~npd-~-~~~v~S~n-t~R---~~--~-------------p~~GSifnlsWS~DGTQ~a~gt~~G~ 279 (737)
T KOG1524|consen 221 FTSAAEEYAITSVAFNPE-K-DYLLWSYN-TAR---FS--S-------------PRVGSIFNLSWSADGTQATCGTSTGQ 279 (737)
T ss_pred ccCChhccceeeeeeccc-c-ceeeeeee-eee---ec--C-------------CCccceEEEEEcCCCceeeccccCce
Confidence 888889999999999999 5 67777643 343 22 1 13467999999999988887777777
Q ss_pred EEE
Q 038533 332 MQL 334 (337)
Q Consensus 332 i~i 334 (337)
+.+
T Consensus 280 v~~ 282 (737)
T KOG1524|consen 280 LIV 282 (737)
T ss_pred EEE
Confidence 653
No 191
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.4e-17 Score=143.54 Aligned_cols=287 Identities=13% Similarity=0.188 Sum_probs=198.2
Q ss_pred eeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-
Q 038533 24 LYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D- 99 (337)
Q Consensus 24 v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~- 99 (337)
-.++.++ +.+.+... +-.+.+|.....+ ...........|.-.+++.+++|+++ ++|++. +
T Consensus 163 ~~~I~~~~~ge~~~i~~-----~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~---------~~Aa~d~dG 227 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVH-----MCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNER---------YLAAGDSDG 227 (792)
T ss_pred CccEEEcCCceEEEEEE-----eeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccc---------eEEEeccCC
Confidence 3566777 55555555 7788888887755 33322233467888899999999998 999987 4
Q ss_pred eEEEEecCC--CCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEe
Q 038533 100 FLRLWDVGD--SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW 177 (337)
Q Consensus 100 ~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 177 (337)
.|.+|.--. +.......+.-|. .+|++++|++ +|.+|++|+..|.+.+|.+.+++ .+-+..-.++|..+.+
T Consensus 228 rI~vw~d~~~~~~~~t~t~lHWH~-----~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~v 300 (792)
T KOG1963|consen 228 RILVWRDFGSSDDSETCTLLHWHH-----DEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVV 300 (792)
T ss_pred cEEEEeccccccccccceEEEecc-----cccceeEEec-CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEE
Confidence 999997544 3334556777777 8999999998 99999999999999999999988 4445566789999999
Q ss_pred C-CCcEEEEEcCCCeEEEEECCCCCCceeeecCC--------CCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCC
Q 038533 178 G-EARVFASVSADGSVRIFDLRDKEHSTIIYESP--------QPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT 248 (337)
Q Consensus 178 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~ 248 (337)
+ ++++.+....|..|.+....+......+.... ...+-.+.++++| ..+.++..+..+. |.+||+.+..
T Consensus 301 S~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~-vQ~ydl~td~ 378 (792)
T KOG1963|consen 301 SPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGH-VQFYDLYTDS 378 (792)
T ss_pred cCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCce-EEEEeccccc
Confidence 9 78899999999999998875544322221110 1233455666776 5555555566665 6666654321
Q ss_pred CCeEE--------------------------------------------------------------------eecccce
Q 038533 249 LPVAE--------------------------------------------------------------------LERHRAC 260 (337)
Q Consensus 249 ~~~~~--------------------------------------------------------------------~~~~~~~ 260 (337)
. +.. ...|...
T Consensus 379 ~-i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~ 457 (792)
T KOG1963|consen 379 T-IYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNA 457 (792)
T ss_pred e-eeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCce
Confidence 1 111 1134444
Q ss_pred eeEEEeCCCCC-CeEEEEcCCCcEEEEeCCCCCCCCCC--CCCce-eeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 261 VNAIAWAPQSR-RHICSVGDDSQAFIWELPLPPVAGPN--GIDPM-SMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 261 v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
+...++.+.-+ ..+++++.||.++||-+...+...+. ...+. ...-|..++.+++|+.|| .+++++.|++|.+|+
T Consensus 458 ~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dG-slla~s~~~~Itiwd 536 (792)
T KOG1963|consen 458 FVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDG-SLLAVSFDDTITIWD 536 (792)
T ss_pred eEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCC-cEEEEecCCEEEEec
Confidence 44444443333 27899999999999999532222111 11111 222378899999999999 599999999999997
No 192
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.82 E-value=7.4e-19 Score=132.67 Aligned_cols=242 Identities=15% Similarity=0.199 Sum_probs=173.5
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeec-CCCCCcccCCeeEEEeecCCCCeEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLN-NSKSSEFCAPLTSFDWNEIEPKRIG 143 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~ 143 (337)
.+|...++++.|..++. |.+|. - .|++|++++. +....+. .+. ..|+.+.--| + ..+.
T Consensus 11 Rp~~~~v~s~~fqa~~r----------L~sg~~~G~V~~w~lqt~--r~~~~~r~~g~-----~~it~lq~~p-~-d~l~ 71 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANER----------LMSGLSVGIVKMWVLQTE--RDLPLIRLFGR-----LFITNLQSIP-N-DSLD 71 (323)
T ss_pred ccccchheehhhccchh----------hhcccccceEEEEEeecC--ccchhhhhhcc-----ceeeceeecC-C-cchh
Confidence 58889999999987774 55554 3 9999999998 4444555 333 6788888776 4 7788
Q ss_pred EeeCCCcEEEEeCCCcc------------------------ch-hhh--h--------------------------ccCC
Q 038533 144 TCSIDTTCTIWDIEKGV------------------------VE-TQL--I--------------------------AHDK 170 (337)
Q Consensus 144 ~~~~dg~i~v~d~~~~~------------------------~~-~~~--~--------------------------~~~~ 170 (337)
+-+.|+.+.+|++.-+. .. ... . +..+
T Consensus 72 tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klg 151 (323)
T KOG0322|consen 72 TQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLG 151 (323)
T ss_pred hcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccC
Confidence 88999999999985421 00 000 0 0112
Q ss_pred ceeEEEeC--CC--cEEEEEcCCCeEEEEECCCCCCce-------eeecCCCCCCCceEEEeecCCCcEEEEEEecCCEE
Q 038533 171 EVYDICWG--EA--RVFASVSADGSVRIFDLRDKEHST-------IIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKV 239 (337)
Q Consensus 171 ~v~~~~~~--~~--~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i 239 (337)
.+++..+. .+ -++++|-++|.+.+||+.++.... .......|..++.++.+.+ .-..=++++.+.. +
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dk-l 229 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDK-L 229 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcccc-c
Confidence 35555544 22 256778889999999999873221 2223335788999999987 4455556666666 8
Q ss_pred EEEECCCCCC--Ce-EEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEE
Q 038533 240 VILDIRSPTL--PV-AELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQW 316 (337)
Q Consensus 240 ~i~d~~~~~~--~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 316 (337)
..|.+..... ++ .++.-..-.|..+..-||++ ++||++.|++||||+.+ ++. ....+..|...|++++|
T Consensus 230 ~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswr--tl~-----pLAVLkyHsagvn~vAf 301 (323)
T KOG0322|consen 230 VMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWR--TLN-----PLAVLKYHSAGVNAVAF 301 (323)
T ss_pred eeeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEec--cCC-----chhhhhhhhcceeEEEe
Confidence 8888875321 11 12222345688899999999 99999999999999999 533 24477789999999999
Q ss_pred ccCCCceEEEEcCCcEEEEeC
Q 038533 317 SPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 317 ~~~~~~l~~~~~d~~i~iw~l 337 (337)
+|+.+.+++++.|++|.+|++
T Consensus 302 spd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 302 SPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CCCCchhhhccCCceEEeeec
Confidence 999888999999999999986
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=6.1e-19 Score=149.20 Aligned_cols=234 Identities=15% Similarity=0.260 Sum_probs=184.5
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.|.+.|+|++|+ |+++|+|+. |..|.+|+-.-+. .+ ...|.+.|.|+.|+|-.. .|++
T Consensus 51 gHKDtVycVAys~dGkrFASG~a----DK~VI~W~~klEG-~L------kYSH~D~IQCMsFNP~~h---------~Las 110 (1081)
T KOG1538|consen 51 GHKDTVYCVAYAKDGKRFASGSA----DKSVIIWTSKLEG-IL------KYSHNDAIQCMSFNPITH---------QLAS 110 (1081)
T ss_pred cccceEEEEEEccCCceeccCCC----ceeEEEecccccc-ee------eeccCCeeeEeecCchHH---------Hhhh
Confidence 368899999999 999999998 9999998654332 22 268999999999999998 9999
Q ss_pred eCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh---ccCCce
Q 038533 97 SGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI---AHDKEV 172 (337)
Q Consensus 97 ~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~~v 172 (337)
|+= ..-+|...... +...+. ...|.+++|.. +|++++.|-.||+|.+-+- ++++...+. +.+++|
T Consensus 111 CsLsdFglWS~~qK~---V~K~ks------s~R~~~CsWtn-DGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspi 179 (1081)
T KOG1538|consen 111 CSLSDFGLWSPEQKS---VSKHKS------SSRIICCSWTN-DGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPI 179 (1081)
T ss_pred cchhhccccChhhhh---HHhhhh------heeEEEeeecC-CCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCc
Confidence 995 88899877652 222221 16789999997 9999999999999999864 444333333 567899
Q ss_pred eEEEeCC------CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCC
Q 038533 173 YDICWGE------ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRS 246 (337)
Q Consensus 173 ~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~ 246 (337)
.+++|+| ...+++.....++.+|.+........ ..-+-.-.|+.+.| +|.+++.|+.|+. +++|--.
T Consensus 180 wsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~----r~L~FdP~CisYf~-NGEy~LiGGsdk~-L~~fTR~- 252 (1081)
T KOG1538|consen 180 WSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD----RALNFDPCCISYFT-NGEYILLGGSDKQ-LSLFTRD- 252 (1081)
T ss_pred eEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc----ccCCCCchhheecc-CCcEEEEccCCCc-eEEEeec-
Confidence 9999993 46888999999999999876542211 11234557888998 9999999999998 9999654
Q ss_pred CCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCC
Q 038533 247 PTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPP 292 (337)
Q Consensus 247 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 292 (337)
+..+.++......|+.++..|+++ .++.|+.||+|..|++-.++
T Consensus 253 -GvrLGTvg~~D~WIWtV~~~PNsQ-~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 253 -GVRLGTVGEQDSWIWTVQAKPNSQ-YVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred -CeEEeeccccceeEEEEEEccCCc-eEEEEEccCeeehhhhHHhH
Confidence 455667766788999999999999 99999999999999986443
No 194
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=2.8e-19 Score=144.95 Aligned_cols=265 Identities=15% Similarity=0.220 Sum_probs=206.8
Q ss_pred CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC
Q 038533 21 PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG 98 (337)
Q Consensus 21 ~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~ 98 (337)
....+.+.|+ |..|+.|+. .|.|..+||......++ ..-...|.++.|-.+.. ++|++-
T Consensus 129 eFGPY~~~ytrnGrhlllgGr----KGHlAa~Dw~t~~L~~E------i~v~Etv~Dv~~LHneq---------~~AVAQ 189 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGR----KGHLAAFDWVTKKLHFE------INVMETVRDVTFLHNEQ---------FFAVAQ 189 (545)
T ss_pred ccCCeeeeecCCccEEEecCC----ccceeeeecccceeeee------eehhhhhhhhhhhcchH---------HHHhhh
Confidence 4557788998 999999997 99999999987766555 35567799999998887 999998
Q ss_pred C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEe
Q 038533 99 D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW 177 (337)
Q Consensus 99 ~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 177 (337)
. .+.|||-..- .+..++.| ..|..+.|-| .--+|++++..|.++.-|+.+|+.+..+....+.+..++-
T Consensus 190 K~y~yvYD~~Gt---ElHClk~~------~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 190 KKYVYVYDNNGT---ELHCLKRH------IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred hceEEEecCCCc---EEeehhhc------Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 7 9999997664 44555555 6789999999 7789999999999999999999999999988888999998
Q ss_pred CC-CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeec
Q 038533 178 GE-ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELER 256 (337)
Q Consensus 178 ~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~ 256 (337)
+| +..+-+|...|+|.+|.....+....+. .|.++|.++++.+ +|+|+++.+.|.. ++|||+|+..+ +.++..
T Consensus 260 NP~NaVih~GhsnGtVSlWSP~skePLvKiL---cH~g~V~siAv~~-~G~YMaTtG~Dr~-~kIWDlR~~~q-l~t~~t 333 (545)
T KOG1272|consen 260 NPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL---CHRGPVSSIAVDR-GGRYMATTGLDRK-VKIWDLRNFYQ-LHTYRT 333 (545)
T ss_pred CCccceEEEcCCCceEEecCCCCcchHHHHH---hcCCCcceEEECC-CCcEEeecccccc-eeEeeeccccc-cceeec
Confidence 85 5677789999999999998887554443 4789999999999 9999999999999 99999998554 344433
Q ss_pred ccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEE
Q 038533 257 HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIA 327 (337)
Q Consensus 257 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 327 (337)
..+...+++|..| +||.+ ....+.||.=..... +-...+.......++|.++.|.|... ++..+
T Consensus 334 -p~~a~~ls~Sqkg--lLA~~-~G~~v~iw~d~~~~s--~~~~~pYm~H~~~~~V~~l~FcP~ED-vLGIG 397 (545)
T KOG1272|consen 334 -PHPASNLSLSQKG--LLALS-YGDHVQIWKDALKGS--GHGETPYMNHRCGGPVEDLRFCPYED-VLGIG 397 (545)
T ss_pred -CCCcccccccccc--ceeee-cCCeeeeehhhhcCC--CCCCcchhhhccCcccccceeccHHH-eeecc
Confidence 3467788888775 35444 455789995442111 11233444444566899999999874 44433
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=7.3e-18 Score=146.30 Aligned_cols=235 Identities=16% Similarity=0.177 Sum_probs=159.2
Q ss_pred cceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC----C-eEEEEecCCCCccceeeec
Q 038533 44 TNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG----D-FLRLWDVGDSSIEPVAVLN 118 (337)
Q Consensus 44 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~----~-~v~vw~~~~~~~~~~~~~~ 118 (337)
+..|.+||.+...... . ..|...+...+|+|+++ .|+..+ + .|.+||+.+++.+.+..+.
T Consensus 183 ~~~i~i~d~dg~~~~~-l-----t~~~~~v~~p~wSPDG~---------~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~ 247 (429)
T PRK01742 183 PYEVRVADYDGFNQFI-V-----NRSSQPLMSPAWSPDGS---------KLAYVSFENKKSQLVVHDLRSGARKVVASFR 247 (429)
T ss_pred eEEEEEECCCCCCceE-e-----ccCCCccccceEcCCCC---------EEEEEEecCCCcEEEEEeCCCCceEEEecCC
Confidence 5688888876554222 1 56778899999999998 666653 2 7999999887544444444
Q ss_pred CCCCCcccCCeeEEEeecCCCCeEEEee-CCCcEEEE--eCCCccchhhhhccCCceeEEEeC-CCcEEEEEc-CCCeEE
Q 038533 119 NSKSSEFCAPLTSFDWNEIEPKRIGTCS-IDTTCTIW--DIEKGVVETQLIAHDKEVYDICWG-EARVFASVS-ADGSVR 193 (337)
Q Consensus 119 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~--d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~dg~i~ 193 (337)
++ ...++|+| +++.|+.+. .+|.+.|| |+.+++ ...+..+...+.+..|+ +++.++.++ .+|...
T Consensus 248 g~--------~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~ 317 (429)
T PRK01742 248 GH--------NGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQ 317 (429)
T ss_pred Cc--------cCceeECC-CCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCce
Confidence 33 34689999 998887764 67876555 665554 34455566678899999 677666554 578888
Q ss_pred EEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCe
Q 038533 194 IFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRH 273 (337)
Q Consensus 194 iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 273 (337)
+|++........... +.. ....|+| +++.|+..+.++ +.+||+.+. ... .+... .....+.|+|+|+ +
T Consensus 318 I~~~~~~~~~~~~l~---~~~--~~~~~Sp-DG~~ia~~~~~~--i~~~Dl~~g-~~~-~lt~~-~~~~~~~~sPdG~-~ 385 (429)
T PRK01742 318 VYRMSASGGGASLVG---GRG--YSAQISA-DGKTLVMINGDN--VVKQDLTSG-STE-VLSST-FLDESPSISPNGI-M 385 (429)
T ss_pred EEEEECCCCCeEEec---CCC--CCccCCC-CCCEEEEEcCCC--EEEEECCCC-CeE-EecCC-CCCCCceECCCCC-E
Confidence 888754332222222 222 4578999 999988877654 777999873 322 22211 1335678999999 8
Q ss_pred EEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCC
Q 038533 274 ICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQ 320 (337)
Q Consensus 274 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 320 (337)
|+.++.++.+.+|.+.... +.....+..|.+.+...+|+|-.
T Consensus 386 i~~~s~~g~~~~l~~~~~~-----G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 386 IIYSSTQGLGKVLQLVSAD-----GRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred EEEEEcCCCceEEEEEECC-----CCceEEccCCCCCCCCcccCCCC
Confidence 8888889988888764111 23344566778889999999853
No 196
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=5.2e-18 Score=131.49 Aligned_cols=234 Identities=17% Similarity=0.281 Sum_probs=177.0
Q ss_pred CCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCC-ccceeeecCCCCCcccCCeeEEEeecCCCCeEEEe
Q 038533 69 HPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSS-IEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTC 145 (337)
Q Consensus 69 ~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 145 (337)
..++|+|.+|++|.. .+|.+.. .|.||.....+ .+...+++.|. ..|++++|+| ..+.|++|
T Consensus 9 ~~~pitchAwn~drt---------~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd-----~~vtgvdWap-~snrIvtc 73 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRT---------QIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD-----KIVTGVDWAP-KSNRIVTC 73 (361)
T ss_pred ccCceeeeeecCCCc---------eEEeccCCceEEEEEecCCCCceeceehhhhC-----cceeEEeecC-CCCceeEc
Confidence 457899999999999 8888774 99999998887 67888888888 9999999999 89999999
Q ss_pred eCCCcEEEEeCCC-cc--chhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCc---eeeecCCCCCCCceE
Q 038533 146 SIDTTCTIWDIEK-GV--VETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHS---TIIYESPQPDTPLLR 218 (337)
Q Consensus 146 ~~dg~i~v~d~~~-~~--~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~~i~~ 218 (337)
+.|..-++|.... ++ +...+..++...+++.|+ .++.|++|+....|.+|=++..+.= +.+.. .....|.+
T Consensus 74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikk--PirStv~s 151 (361)
T KOG1523|consen 74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKK--PIRSTVTS 151 (361)
T ss_pred cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCC--ccccceee
Confidence 9999999999843 33 445566789999999999 6999999999999999988765421 11111 24678999
Q ss_pred EEeecCCCcEEEEEEecCCEEEEEECC-----CC------------CCCeEEeecccceeeEEEeCCCCCCeEEEEcCCC
Q 038533 219 LAWNKQDLRYMATILMDSNKVVILDIR-----SP------------TLPVAELERHRACVNAIAWAPQSRRHICSVGDDS 281 (337)
Q Consensus 219 ~~~~~~~~~~l~~~~~d~~~i~i~d~~-----~~------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 281 (337)
+.|+| ++-+|++|+.|+. .++|..- .. ++++.++....+.+..+.|+|+|. .|+-.+.|.
T Consensus 152 ldWhp-nnVLlaaGs~D~k-~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds 228 (361)
T KOG1523|consen 152 LDWHP-NNVLLAAGSTDGK-CRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDS 228 (361)
T ss_pred eeccC-CcceecccccCcc-eeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCC
Confidence 99999 9999999999998 8888532 10 112223334457899999999999 999999999
Q ss_pred cEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcC
Q 038533 282 QAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFS 329 (337)
Q Consensus 282 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 329 (337)
.+.+-|...+.. .+........+..++.|-.+. .+++++.|
T Consensus 229 ~v~~~da~~p~~------~v~~~~~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 229 TVSFVDAAGPSE------RVQSVATAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred ceEEeecCCCch------hccchhhccCCceeeEeecCC-ceeecCCC
Confidence 999999883321 112222222566667665443 24444443
No 197
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.8e-17 Score=146.93 Aligned_cols=247 Identities=16% Similarity=0.195 Sum_probs=176.1
Q ss_pred CCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeec-CCCCeEEEe
Q 038533 69 HPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNE-IEPKRIGTC 145 (337)
Q Consensus 69 ~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~l~~~ 145 (337)
...+...+.|+|-.+ .++++.+ .|+|||.+.+ +....+..+. .....|+.+.+-. .+..++++|
T Consensus 1063 n~~~pk~~~~hpf~p---------~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~--~~~t~Vs~l~liNe~D~aLlLta 1129 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEP---------QIAAADDRERIRVWDWEKG--RLLNGFDNGA--FPDTRVSDLELINEQDDALLLTA 1129 (1387)
T ss_pred CCCCCceeeecCCCc---------eeEEcCCcceEEEEecccC--ceeccccCCC--CCCCccceeeeecccchhheeee
Confidence 334567788899888 7888775 9999999998 5566665543 2226788888743 355799999
Q ss_pred eCCCcEEEEeCCCc-----cchhhhh-------ccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCC
Q 038533 146 SIDTTCTIWDIEKG-----VVETQLI-------AHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQP 212 (337)
Q Consensus 146 ~~dg~i~v~d~~~~-----~~~~~~~-------~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 212 (337)
+.||.|+||+--.. +.+.... +..+.-.-+.|. ...+|++++.-..|+|||.........+... .
T Consensus 1130 s~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~--s 1207 (1387)
T KOG1517|consen 1130 SSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG--S 1207 (1387)
T ss_pred ccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC--C
Confidence 99999999963221 2222111 111222345676 4556666666889999999887755444333 4
Q ss_pred CCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCC--CeEEeecccce--eeEEEeCCCCCCeEEEEcCCCcEEEEeC
Q 038533 213 DTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTL--PVAELERHRAC--VNAIAWAPQSRRHICSVGDDSQAFIWEL 288 (337)
Q Consensus 213 ~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 288 (337)
+..++++.-+-..++.+++|..||. |++||.|.+.. ++...+.|... |..+.+.+.|-.-|++|+.||.|++||+
T Consensus 1208 ~t~vTaLS~~~~~gn~i~AGfaDGs-vRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~Dl 1286 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGS-VRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDL 1286 (1387)
T ss_pred CccceeecccccCCceEEEeecCCc-eEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEec
Confidence 5677777766557899999999999 99999997543 67777888877 9999999988756999999999999999
Q ss_pred CCCCCCCCCCCCceeeeeC---CCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 289 PLPPVAGPNGIDPMSMYSA---GSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
+.+.. +.......| .+..+++..|++.+.+++++. +.|+||++
T Consensus 1287 R~~~~-----e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1287 RMSSK-----ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL 1332 (1387)
T ss_pred ccCcc-----cccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec
Confidence 95321 112333333 235999999999986666665 99999985
No 198
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=2.7e-16 Score=137.06 Aligned_cols=274 Identities=23% Similarity=0.406 Sum_probs=199.6
Q ss_pred ceeEEEE-e--cc-eEEEeeeeccCcceEEEEEecC-CCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe
Q 038533 23 PLYAMAV-C--GQ-RIAVGSFIEDYTNRVDVVSFEP-ESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS 97 (337)
Q Consensus 23 ~v~~~~~-s--~~-~la~g~~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~ 97 (337)
.+..+.+ + +. .++..+. .++.+.+|+... ...... ...|...|..++|+|++. .++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~---------~~~~~ 173 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSS---LDGTVKLWDLSTPGKLIRT-----LEGHSESVTSLAFSPDGK---------LLASG 173 (466)
T ss_pred ceeeEEEECCCcceEEeccCC---CCccEEEEEecCCCeEEEE-----EecCcccEEEEEECCCCC---------EEEec
Confidence 5666666 5 44 3333221 288999999886 222222 268999999999999998 66666
Q ss_pred C--C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCC-eEEEeeCCCcEEEEeCCCccchh-hhhccCCce
Q 038533 98 G--D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPK-RIGTCSIDTTCTIWDIEKGVVET-QLIAHDKEV 172 (337)
Q Consensus 98 ~--~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~-~~~~~~~~v 172 (337)
+ + .+++|++... .....+.+|. ..|.+++|+| ++. .+++++.|+.|++||...+.... .+..|....
T Consensus 174 ~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 245 (466)
T COG2319 174 SSLDGTIKLWDLRTG--KPLSTLAGHT-----DPVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV 245 (466)
T ss_pred CCCCCceEEEEcCCC--ceEEeeccCC-----CceEEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce
Confidence 5 6 9999999986 6777788777 9999999997 776 56665999999999988777766 577787765
Q ss_pred eEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCe
Q 038533 173 YDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPV 251 (337)
Q Consensus 173 ~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~ 251 (337)
...|+ ++..+++++.|+.+++||++......... ..|...+.++.|+| ++..+++++.++. +.+||.+... ..
T Consensus 246 -~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~-~~~~~~~~~~d~~-~~~~~~~~~~-~~ 319 (466)
T COG2319 246 -VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSVLSVAFSP-DGKLLASGSSDGT-VRLWDLETGK-LL 319 (466)
T ss_pred -eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccEEEEEECC-CCCEEEEeeCCCc-EEEEEcCCCc-eE
Confidence 33777 55688899999999999999877522222 34678999999999 8888888888866 9999988743 33
Q ss_pred EEee--cccceeeEEEeCCCCCCeEEEE-cCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEE-EE
Q 038533 252 AELE--RHRACVNAIAWAPQSRRHICSV-GDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLA-IA 327 (337)
Q Consensus 252 ~~~~--~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~ 327 (337)
.... .|...+..+.|.+++. .++.+ ..|+.+.+|++. ... ..........+..+.+.+ ....+. +.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~--~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 389 (466)
T COG2319 320 SSLTLKGHEGPVSSLSFSPDGS-LLVSGGSDDGTIRLWDLR--TGK------PLKTLEGHSNVLSVSFSP-DGRVVSSGS 389 (466)
T ss_pred EEeeecccCCceEEEEECCCCC-EEEEeecCCCcEEeeecC--CCc------eeEEecCCceEEEEEECC-CCCEEEEec
Confidence 3333 6777799999943324 45555 688999999998 311 112222222289999999 644444 56
Q ss_pred cCCcEEEEeC
Q 038533 328 FSNKMQLLKV 337 (337)
Q Consensus 328 ~d~~i~iw~l 337 (337)
.++.+.+|+.
T Consensus 390 ~~~~~~~~~~ 399 (466)
T COG2319 390 TDGTVRLWDL 399 (466)
T ss_pred CCCceEEEec
Confidence 8899999974
No 199
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=2.9e-18 Score=141.54 Aligned_cols=226 Identities=18% Similarity=0.286 Sum_probs=162.5
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeCC-e-EEEEecCCCCccceeeecCCCCCcccCCeeEEEeec------CC
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-F-LRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNE------IE 138 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~ 138 (337)
..|...+.++.|+.... .+.+++| . +.-|++.+...+........ -.+.+..-+ ..
T Consensus 11 ~r~~e~vc~v~w~~~ee---------i~~~~dDh~~~~~~~~~~~s~~~~~~p~df-------~pt~~h~~~rs~~~g~~ 74 (737)
T KOG1524|consen 11 NRNSEKVCCVDWSSNEE---------IYFVSDDHQIFKWSDVSRDSVEVAKLPDDF-------VPTDMHLGGRSSGGGKG 74 (737)
T ss_pred cccceeEEeecccccce---------EEEeccCceEEEeecccchhhhhhhCCccc-------CCccccccccccCCCCC
Confidence 45777788999999887 8888887 4 44455555432222111110 001111111 12
Q ss_pred CCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCce
Q 038533 139 PKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLL 217 (337)
Q Consensus 139 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~ 217 (337)
...|+.++.||.+.+.+ +.++..+.+.+|.+.+.+-.|+ +|.-|+++++||.|++|.-...-..... ....+|+
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~----Q~~~~v~ 149 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVV----QNEESIR 149 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHh----hcCceeE
Confidence 35788899999999988 4677788889999999999999 8999999999999999996544322222 2357999
Q ss_pred EEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCC
Q 038533 218 RLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPN 297 (337)
Q Consensus 218 ~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 297 (337)
|++|.|...+.+++.+ + . +.+=.+....+ +-..+.|.+-|.++.|+|... ++++|++|-..++||..
T Consensus 150 c~~W~p~S~~vl~c~g-~-h-~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~-------- 216 (737)
T KOG1524|consen 150 CARWAPNSNSIVFCQG-G-H-ISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ-------- 216 (737)
T ss_pred EEEECCCCCceEEecC-C-e-EEEeecccccc-eeEEeccCcEEEEeecCcccc-ceeecCCceeEEeeccc--------
Confidence 9999994445555432 2 2 77766766444 446788999999999999998 99999999999999998
Q ss_pred CCCceeeeeCCCceeEEEEccCCCceEEEE
Q 038533 298 GIDPMSMYSAGSEINQLQWSPAQPDWLAIA 327 (337)
Q Consensus 298 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 327 (337)
|...+....|..+|++++|+|+ ..++.++
T Consensus 217 G~~Lf~S~~~ey~ITSva~npd-~~~~v~S 245 (737)
T KOG1524|consen 217 GANLFTSAAEEYAITSVAFNPE-KDYLLWS 245 (737)
T ss_pred CcccccCChhccceeeeeeccc-cceeeee
Confidence 4446677789999999999999 3344333
No 200
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.81 E-value=1.3e-17 Score=130.68 Aligned_cols=301 Identities=15% Similarity=0.246 Sum_probs=196.7
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCc-ceecCCCc-----------CCCCCCCCeEEEecCCCCc
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESL-SIKTHPSL-----------SFDHPYPPTKLMFDPNSSS 84 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~-~~~~~~~~-----------~~~~~~~i~~i~~~~~~~~ 84 (337)
...+-|.++.|. |.+||+|.. +|.|.++.-+.... ++...... ...-...|+.+.|.+++.
T Consensus 23 teadiis~vef~~~Ge~LatGdk----gGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n- 97 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDK----GGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN- 97 (433)
T ss_pred chhcceeeEEeecccceEeecCC----CCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC-
Confidence 345779999999 999999997 99999987554332 11110000 123346799999999876
Q ss_pred ccCcCCccEEEEeCC-eEEEEecCCCCccc------------------eeeecCCC-----------CCcccCCeeEEEe
Q 038533 85 RKSSSNRHLLASSGD-FLRLWDVGDSSIEP------------------VAVLNNSK-----------SSEFCAPLTSFDW 134 (337)
Q Consensus 85 ~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~------------------~~~~~~~~-----------~~~~~~~i~~~~~ 134 (337)
...+|.++.| +|++|.+.....+. +..+..|. ...|.--|.++.+
T Consensus 98 -----~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 98 -----LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISV 172 (433)
T ss_pred -----ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeee
Confidence 3357888888 99999987543211 11111111 1123356889999
Q ss_pred ecCCCCeEEEeeCCCcEEEEeCCCccc---hhhhh-----ccCCceeEEEeCC--CcEEEEEcCCCeEEEEECCCCCCc-
Q 038533 135 NEIEPKRIGTCSIDTTCTIWDIEKGVV---ETQLI-----AHDKEVYDICWGE--ARVFASVSADGSVRIFDLRDKEHS- 203 (337)
Q Consensus 135 ~~~~~~~l~~~~~dg~i~v~d~~~~~~---~~~~~-----~~~~~v~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~- 203 (337)
+. +...++++. |=.|.+|+++--.. +..++ .-..-|++..|+| .+.|+..+..|+|++-|+|.....
T Consensus 173 Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd 250 (433)
T KOG1354|consen 173 NS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD 250 (433)
T ss_pred cC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc
Confidence 97 888888875 77899999864321 11122 2234588899994 788999999999999999954211
Q ss_pred --eeeecCCC----------CCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccc------------
Q 038533 204 --TIIYESPQ----------PDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRA------------ 259 (337)
Q Consensus 204 --~~~~~~~~----------~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~------------ 259 (337)
..+++.+. --..|..+.|++ +|+|+++-..- +|++||+....+|+.+.+.|..
T Consensus 251 ~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDyl--tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD 327 (433)
T KOG1354|consen 251 AHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDYL--TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEND 327 (433)
T ss_pred chhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEeccc--eeEEEeccccCCcceEEeehHhHHHHHHHHhhcc
Confidence 11111111 124688899998 99999975433 4999999877888988887743
Q ss_pred ---eeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCC-----------CCCC-Cce-eee-e-------------CCC
Q 038533 260 ---CVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAG-----------PNGI-DPM-SMY-S-------------AGS 309 (337)
Q Consensus 260 ---~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----------~~~~-~~~-~~~-~-------------~~~ 309 (337)
.-..++|+.++. +++||+..+.+++++...+.... +... .+. +.. + ...
T Consensus 328 ~IfdKFec~~sg~~~-~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~k 406 (433)
T KOG1354|consen 328 AIFDKFECSWSGNDS-YVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRK 406 (433)
T ss_pred chhheeEEEEcCCcc-eEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhh
Confidence 124578999988 99999999999999965332210 0000 000 110 1 123
Q ss_pred ceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 310 EINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 310 ~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
.+...+|+|... .++++..+.+.||.
T Consensus 407 kilh~aWhp~en-~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 407 KILHTAWHPKEN-SIAVAATNNLYIFQ 432 (433)
T ss_pred HHHhhccCCccc-eeeeeecCceEEec
Confidence 467789999986 55555566676663
No 201
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.5e-18 Score=138.82 Aligned_cols=288 Identities=18% Similarity=0.237 Sum_probs=208.8
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.|.+.|..+.|+ |..|++|+. |..|.+|+|......+.. ..+|...|..-.|.|... ..-+++
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSD----D~~vv~WdW~~~~~~l~f----~SGH~~NvfQaKFiP~s~-------d~ti~~ 204 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSD----DLQVVVWDWVSGSPKLSF----ESGHCNNVFQAKFIPFSG-------DRTIVT 204 (559)
T ss_pred CCCCccceeeecccCceeeccCc----cceEEeehhhccCccccc----ccccccchhhhhccCCCC-------CcCcee
Confidence 468999999999 999999997 999999999977655544 578999999988988653 124555
Q ss_pred eC-C-eEEEEecCCC-CccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh---ccCC
Q 038533 97 SG-D-FLRLWDVGDS-SIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI---AHDK 170 (337)
Q Consensus 97 ~~-~-~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~~~ 170 (337)
++ | .|++=.+... ..+....+..|. ++|..++.-|.....|.+++.|+.+.-+|++.+.+...+. .+..
T Consensus 205 ~s~dgqvr~s~i~~t~~~e~t~rl~~h~-----g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~ 279 (559)
T KOG1334|consen 205 SSRDGQVRVSEILETGYVENTKRLAPHE-----GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK 279 (559)
T ss_pred ccccCceeeeeeccccceecceeccccc-----CccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCc
Confidence 55 5 7777665433 234456667777 8999999999888999999999999999998876443332 2333
Q ss_pred ---ceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCc------eeeecC---CCCCCCceEEEeecCCCcEEEEEEecC
Q 038533 171 ---EVYDICWG--EARVFASVSADGSVRIFDLRDKEHS------TIIYES---PQPDTPLLRLAWNKQDLRYMATILMDS 236 (337)
Q Consensus 171 ---~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~---~~~~~~i~~~~~~~~~~~~l~~~~~d~ 236 (337)
..++++.+ +...+++++.|-.+++||.+.-... ..+... ......|++++|+. ++.-|+++-.|.
T Consensus 280 ~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh-~~sElLaSYnDe 358 (559)
T KOG1334|consen 280 ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH-DGSELLASYNDE 358 (559)
T ss_pred cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC-Cccceeeeeccc
Confidence 46778887 3668999999999999999865322 111000 02346799999997 555555555565
Q ss_pred CEEEEEECCCCC-----------CCeEE-eecccc--eeeEEE-eCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCc
Q 038533 237 NKVVILDIRSPT-----------LPVAE-LERHRA--CVNAIA-WAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDP 301 (337)
Q Consensus 237 ~~i~i~d~~~~~-----------~~~~~-~~~~~~--~v~~~~-~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 301 (337)
. |++|.-.... ..+.. +++|.. .|..+- |-|..+ ++++|+.-|.|.||+-..++ ..
T Consensus 359 ~-IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE-yVvSGSDCGhIFiW~K~t~e-------ii 429 (559)
T KOG1334|consen 359 D-IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE-YVVSGSDCGHIFIWDKKTGE-------II 429 (559)
T ss_pred c-eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc-eEEecCccceEEEEecchhH-------HH
Confidence 5 9999433211 11222 567754 455664 457777 99999999999999998322 23
Q ss_pred eeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 302 MSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 302 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
..+.+-..-|+||.=+|.-+.|++++-|.-|+||-
T Consensus 430 ~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 430 RFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred HHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence 34444455899999999999999999999999994
No 202
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.3e-17 Score=142.00 Aligned_cols=234 Identities=18% Similarity=0.250 Sum_probs=170.3
Q ss_pred EEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCC--CeEEEeeCCCcE
Q 038533 75 KLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEP--KRIGTCSIDTTC 151 (337)
Q Consensus 75 ~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i 151 (337)
.-.|++|++ ++..+.+ .|+||...++ .++..+.+|. .+++.+.+.|... .++.+++.+|.|
T Consensus 21 ~avfSnD~k---------~l~~~~~~~V~VyS~~Tg--~~i~~l~~~~-----a~l~s~~~~~~~~~~~~~~~~sl~G~I 84 (792)
T KOG1963|consen 21 PAVFSNDAK---------FLFLCTGNFVKVYSTATG--ECITSLEDHT-----APLTSVIVLPSSENANYLIVCSLDGTI 84 (792)
T ss_pred ccccccCCc---------EEEEeeCCEEEEEecchH--hhhhhccccc-----CccceeeecCCCccceEEEEEecCccE
Confidence 346899998 6666555 9999999999 7888999998 9999999988544 477799999999
Q ss_pred EEEeCCCccchhhhhccCCcee----------------------------------------------------------
Q 038533 152 TIWDIEKGVVETQLIAHDKEVY---------------------------------------------------------- 173 (337)
Q Consensus 152 ~v~d~~~~~~~~~~~~~~~~v~---------------------------------------------------------- 173 (337)
++||...+..++++..+. ++.
T Consensus 85 ~vwd~~~~~Llkt~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~ 163 (792)
T KOG1963|consen 85 RVWDWSDGELLKTFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEP 163 (792)
T ss_pred EEecCCCcEEEEEEecCC-ceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCC
Confidence 999998876555443211 111
Q ss_pred -EEEeCCCcEEEEEcCCCeEEEEECCCCCCcee-eecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCC---CC
Q 038533 174 -DICWGEARVFASVSADGSVRIFDLRDKEHSTI-IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRS---PT 248 (337)
Q Consensus 174 -~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~---~~ 248 (337)
.+..++...+...-.+..+.+|+......... ......|...+++.+++| ++++++++..||. |.+|.--. ..
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGr-I~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGR-ILVWRDFGSSDDS 241 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCc-EEEEecccccccc
Confidence 11111111122222234456666655331111 111224566789999999 9999999999998 99995332 12
Q ss_pred CCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEc
Q 038533 249 LPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAF 328 (337)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 328 (337)
.....+.-|...|++++|+++|. +|++|+.+|.+.+|.+..++ ...+..-.++|..+.++||+........
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~T~~--------kqfLPRLgs~I~~i~vS~ds~~~sl~~~ 312 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLETGK--------KQFLPRLGSPILHIVVSPDSDLYSLVLE 312 (792)
T ss_pred ccceEEEecccccceeEEecCCc-eEeecccceEEEEEeecCCC--------cccccccCCeeEEEEEcCCCCeEEEEec
Confidence 34566778889999999999999 99999999999999999333 3455567889999999999988888889
Q ss_pred CCcEEEEe
Q 038533 329 SNKMQLLK 336 (337)
Q Consensus 329 d~~i~iw~ 336 (337)
|+.|.+.+
T Consensus 313 DNqI~li~ 320 (792)
T KOG1963|consen 313 DNQIHLIK 320 (792)
T ss_pred CceEEEEe
Confidence 99998865
No 203
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.2e-18 Score=140.50 Aligned_cols=217 Identities=16% Similarity=0.211 Sum_probs=160.8
Q ss_pred cceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh-ccCCceeEEEeC---CCcEEEEEc
Q 038533 112 EPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI-AHDKEVYDICWG---EARVFASVS 187 (337)
Q Consensus 112 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~---~~~~l~~~~ 187 (337)
.....+.+|+ +.|.|++|+. +|.+|++|+.|-.+.|||.-..+.+..+. +|...|.+++|- .++++++|.
T Consensus 41 ~lE~eL~GH~-----GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 41 DLEAELTGHT-----GCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred chhhhhcccc-----ceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence 4556788998 9999999998 99999999999999999998877777664 899999999999 378899999
Q ss_pred CCCeEEEEECCCCCC-------ceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeec----
Q 038533 188 ADGSVRIFDLRDKEH-------STIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELER---- 256 (337)
Q Consensus 188 ~dg~i~iwd~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~---- 256 (337)
.|..|+++|+...+. .........|...+..++-.|...+.+.++++||. |+-+|+|.+..+-.....
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiREph~c~p~~~~~~~l 193 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIREPHVCNPDEDCPSIL 193 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeecccCCccCCccccccHHH
Confidence 999999999986321 11112222366778888888855589999999999 999999985433222211
Q ss_pred -----ccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCC---C----CCc-----ee--eeeCC--------C
Q 038533 257 -----HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPN---G----IDP-----MS--MYSAG--------S 309 (337)
Q Consensus 257 -----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---~----~~~-----~~--~~~~~--------~ 309 (337)
..-...++..+|..+++|++|+.|--.++||.+ ...++. + ..+ .. ..+|- .
T Consensus 194 ~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R--r~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~ 271 (758)
T KOG1310|consen 194 VNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR--RVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDR 271 (758)
T ss_pred HHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh--hhccCCCCCccccCCCCcccchhheecCccccCccccccc
Confidence 123567899999999999999999999999954 111110 0 000 11 11221 1
Q ss_pred ---ceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 310 ---EINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 310 ---~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
-++-+.|+|+|..|+..=....|++++|
T Consensus 272 ~~~~~t~vtfnpNGtElLvs~~gEhVYlfdv 302 (758)
T KOG1310|consen 272 YITCCTYVTFNPNGTELLVSWGGEHVYLFDV 302 (758)
T ss_pred ceeeeEEEEECCCCcEEEEeeCCeEEEEEee
Confidence 1567889999988877666678888875
No 204
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.78 E-value=1.2e-16 Score=122.59 Aligned_cols=289 Identities=16% Similarity=0.149 Sum_probs=193.3
Q ss_pred cceEEEeee--ecc------CcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCcc-EEEEe--CC
Q 038533 31 GQRIAVGSF--IED------YTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRH-LLASS--GD 99 (337)
Q Consensus 31 ~~~la~g~~--~~~------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~-~l~~~--~~ 99 (337)
.+.||+|+. +++ ..|.+.+|++......... .+.......+..+.|+--.. .+. .++-+ .+
T Consensus 24 ~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~--~~q~~dts~~~dm~w~~~~~------~g~~~l~~a~a~G 95 (339)
T KOG0280|consen 24 RNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLD--TLQCTDTSTEFDMLWRIRET------DGDFNLLDAHARG 95 (339)
T ss_pred cceEEEeeEEecCCCCchheeccceEEEeecccccCccc--eeeeecccccceeeeeeccC------Cccceeeeccccc
Confidence 558888886 222 3578889888765433211 11123345578888874332 001 22222 23
Q ss_pred eEEEEecCCCCccceeeecCCCCCccc-CCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccc--hhhhhccCCceeEEE
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFC-APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVV--ETQLIAHDKEVYDIC 176 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~--~~~~~~~~~~v~~~~ 176 (337)
.|.++..... +....+.+-...... ....++.|++ .+..++++..+|.+.+-+...... ++..+.|+.+....+
T Consensus 96 ~i~~~r~~~~--~ss~~L~~ls~~ki~~~~~lslD~~~-~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~ 172 (339)
T KOG0280|consen 96 QIQLYRNDED--ESSVHLRGLSSKKISVVEALSLDIST-SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAK 172 (339)
T ss_pred eEEEEeeccc--eeeeeecccchhhhhheeeeEEEeec-cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeee
Confidence 8888887655 233333332211111 1255788998 888899999999999766554443 447889999999999
Q ss_pred eC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEe
Q 038533 177 WG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAEL 254 (337)
Q Consensus 177 ~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 254 (337)
|+ +.+++++|+.|+.+..||+|.++ .........|...|.++.-+|+.+.++++|+.|.. |++||.|+.++|+..-
T Consensus 173 f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~~ 250 (339)
T KOG0280|consen 173 FSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFKA 250 (339)
T ss_pred cccCCCceEEecCCCceEEEEEecCCc-ceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCccccC
Confidence 99 57899999999999999999554 22223344577899999999989999999999999 9999999888888765
Q ss_pred ecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEE-cCCcEE
Q 038533 255 ERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIA-FSNKMQ 333 (337)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~ 333 (337)
. -.+.|+.+.++|.-...++.+..-+-.+|-+.+....+ ..........|.+-...-.|......+++++ .|+.++
T Consensus 251 ~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e--~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~ 327 (339)
T KOG0280|consen 251 K-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE--FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIR 327 (339)
T ss_pred c-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccc--hheeeeccccccceeeccccccccceeeeeecccccee
Confidence 4 34789999999975545555555556778887733321 0111223445667777778855544566655 588755
Q ss_pred -EE
Q 038533 334 -LL 335 (337)
Q Consensus 334 -iw 335 (337)
+|
T Consensus 328 ~~W 330 (339)
T KOG0280|consen 328 QLW 330 (339)
T ss_pred eee
Confidence 77
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.78 E-value=2.3e-16 Score=142.05 Aligned_cols=298 Identities=14% Similarity=0.103 Sum_probs=196.0
Q ss_pred eeCCCceeEEEEe---cceEEEeeeeccCcceEEEEEecCCCcc---eecCCCcCCCCCCCCeEEEecCCCCcccCcCCc
Q 038533 18 HESPYPLYAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLS---IKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNR 91 (337)
Q Consensus 18 ~~~~~~v~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~---~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 91 (337)
+.|...|..++.+ +.++++|+. ||+|++|+...-.+. .....+. ..-..++.++...+.+.
T Consensus 1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~----DGtVKvW~~~k~~~~~~s~rS~lty-s~~~sr~~~vt~~~~~~-------- 1111 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSD----DGTVKVWNLRKLEGEGGSARSELTY-SPEGSRVEKVTMCGNGD-------- 1111 (1431)
T ss_pred hhccccccceeecCCCCceEEEecC----CceEEEeeehhhhcCcceeeeeEEE-eccCCceEEEEeccCCC--------
Confidence 4567778888888 589999997 999999998753332 2221111 22567899999999998
Q ss_pred cEEEEeC-C-eEEEEecCCCCcc-----ceeeecCCCCCcccCCeeEEEeecCCCC-eEEEeeCCCcEEEEeCCCccchh
Q 038533 92 HLLASSG-D-FLRLWDVGDSSIE-----PVAVLNNSKSSEFCAPLTSFDWNEIEPK-RIGTCSIDTTCTIWDIEKGVVET 163 (337)
Q Consensus 92 ~~l~~~~-~-~v~vw~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~~dg~i~v~d~~~~~~~~ 163 (337)
.+|.++ | .|++.+++..+.. ..+....+. ....|...+|...... .++.+...+.|..||++......
T Consensus 1112 -~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~---~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1112 -QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKK---DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred -eEEEEcCCCeEEEEEccccccccceeeeeecccccC---CCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 777777 5 9999998762111 111111111 1123334445443445 78888899999999999877665
Q ss_pred hhh--ccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCC--cEEEEEEe-cCC
Q 038533 164 QLI--AHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDL--RYMATILM-DSN 237 (337)
Q Consensus 164 ~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~-d~~ 237 (337)
.++ ...+.|++++.+ -+++++.|+..|.+.+||+|-+......... +..++..+..+|..+ ...++++. ..+
T Consensus 1188 ~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P--~~~~i~~v~~~~~~~~~S~~vs~~~~~~n 1265 (1431)
T KOG1240|consen 1188 RLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP--ARAPIRHVWLCPTYPQESVSVSAGSSSNN 1265 (1431)
T ss_pred hhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc--ccCCcceEEeeccCCCCceEEEecccCCC
Confidence 554 335779999999 5889999999999999999987654443322 447888888887444 45555555 334
Q ss_pred EEEEEECCCCCCCeEEeecc-------------------cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCC---
Q 038533 238 KVVILDIRSPTLPVAELERH-------------------RACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAG--- 295 (337)
Q Consensus 238 ~i~i~d~~~~~~~~~~~~~~-------------------~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~--- 295 (337)
.|.+|++.++ .....+-.. .-......+...+. ++.+|+.|..|+.||...+....
T Consensus 1266 evs~wn~~~g-~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~-~~ltggsd~kIR~wD~~~p~~ss~~~ 1343 (1431)
T KOG1240|consen 1266 EVSTWNMETG-LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG-FLLTGGSDMKIRKWDPTRPEISSYAV 1343 (1431)
T ss_pred ceeeeecccC-cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc-eeeecCCccceeeccCCCcccccccc
Confidence 5999999874 222222211 11112223333344 89999999999999997544330
Q ss_pred --C----------------CCCC-------------c---------------eeeeeCCCceeEEEEccCC-CceEEEEc
Q 038533 296 --P----------------NGID-------------P---------------MSMYSAGSEINQLQWSPAQ-PDWLAIAF 328 (337)
Q Consensus 296 --~----------------~~~~-------------~---------------~~~~~~~~~v~~~~~~~~~-~~l~~~~~ 328 (337)
+ .+.. + .....|..+|+++++.... ..|++++.
T Consensus 1344 ~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~ 1423 (1431)
T KOG1240|consen 1344 PGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSR 1423 (1431)
T ss_pred cCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecC
Confidence 0 0000 0 0112477889999887654 46778889
Q ss_pred CCcEEEEe
Q 038533 329 SNKMQLLK 336 (337)
Q Consensus 329 d~~i~iw~ 336 (337)
||.|+||+
T Consensus 1424 dG~IkiWk 1431 (1431)
T KOG1240|consen 1424 DGVIKIWK 1431 (1431)
T ss_pred CCeeeecC
Confidence 99999996
No 206
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=3e-18 Score=148.25 Aligned_cols=236 Identities=19% Similarity=0.279 Sum_probs=174.4
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.|-..|+|..|. |.++++|+. |-.++||..+........ .+|.+.|+.++.+.++. ++|+
T Consensus 188 gH~naVyca~fDrtg~~Iitgsd----d~lvKiwS~et~~~lAs~-----rGhs~ditdlavs~~n~---------~iaa 249 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSD----DRLVKIWSMETARCLASC-----RGHSGDITDLAVSSNNT---------MIAA 249 (1113)
T ss_pred hhhhheeeeeeccccceEeecCc----cceeeeeeccchhhhccC-----CCCccccchhccchhhh---------hhhh
Confidence 466789999999 999999997 999999986654433333 79999999999999888 8888
Q ss_pred eC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhh---hhc-cCC
Q 038533 97 SG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQ---LIA-HDK 170 (337)
Q Consensus 97 ~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~---~~~-~~~ 170 (337)
++ | .|++|.+.++ .++..+.+|+ +.|++++|+| - .+.+.||++++||.+=.-.+.. .+. ...
T Consensus 250 aS~D~vIrvWrl~~~--~pvsvLrght-----gavtaiafsP-~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 250 ASNDKVIRVWRLPDG--APVSVLRGHT-----GAVTAIAFSP-R----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred cccCceEEEEecCCC--chHHHHhccc-----cceeeeccCc-c----ccCCCCCceEeccccccccccCCCCCCccccc
Confidence 88 5 8999999999 7899999999 9999999999 3 2778999999999871100000 000 000
Q ss_pred --------------------------ceeEEEeC-CC-----------cEEEEEcCCCeEEEEECCCCCCceeeecCCCC
Q 038533 171 --------------------------EVYDICWG-EA-----------RVFASVSADGSVRIFDLRDKEHSTIIYESPQP 212 (337)
Q Consensus 171 --------------------------~v~~~~~~-~~-----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 212 (337)
.+..++|. .. .+.+++-.+-.+++|++.++....... .|
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~---gh 394 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM---GH 394 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc---cc
Confidence 11122222 11 223333345567777777775433322 36
Q ss_pred CCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCC
Q 038533 213 DTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL 290 (337)
Q Consensus 213 ~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 290 (337)
...++.+.++|.+.....+++.||. ..|||+.. +.+++......+.+..-+|+++|. -++....-|.+.|.....
T Consensus 395 sd~~yvLd~Hpfn~ri~msag~dgs-t~iwdi~e-g~pik~y~~gh~kl~d~kFSqdgt-s~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 395 SDEVYVLDVHPFNPRIAMSAGYDGS-TIIWDIWE-GIPIKHYFIGHGKLVDGKFSQDGT-SIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred ccceeeeeecCCCcHhhhhccCCCc-eEeeeccc-CCcceeeecccceeeccccCCCCc-eEecCCCCCceEEeccCC
Confidence 6788999999988899999999999 99999988 556655443345677789999998 777777789999988763
No 207
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=4.4e-15 Score=115.38 Aligned_cols=276 Identities=16% Similarity=0.215 Sum_probs=179.7
Q ss_pred eeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--
Q 038533 24 LYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-- 99 (337)
Q Consensus 24 v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-- 99 (337)
..+++|+ ...+++|. +.-.+||+.++-.+.... .. ..-.-.+..+-|-.+-- .|+.|++
T Consensus 8 ~lsvs~NQD~ScFava~-----~~Gfriyn~~P~ke~~~r--~~-~~~G~~~veMLfR~N~l---------aLVGGg~~p 70 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVAT-----DTGFRIYNCDPFKESASR--QF-IDGGFKIVEMLFRSNYL---------ALVGGGSRP 70 (346)
T ss_pred eeEEEEccCCceEEEEe-----cCceEEEecCchhhhhhh--cc-ccCchhhhhHhhhhceE---------EEecCCCCC
Confidence 4458999 67888888 788899999875443332 00 11112233333433221 2223322
Q ss_pred -----eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCC-Cccchhhhhcc--CCc
Q 038533 100 -----FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIE-KGVVETQLIAH--DKE 171 (337)
Q Consensus 100 -----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~~~~~--~~~ 171 (337)
.|.|||=... +++.++.-. .+|.++.+.+ +.|++.- .+.|.||... +.+.++.+..- ...
T Consensus 71 ky~pNkviIWDD~k~--~~i~el~f~------~~I~~V~l~r---~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkG 138 (346)
T KOG2111|consen 71 KYPPNKVIIWDDLKE--RCIIELSFN------SEIKAVKLRR---DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKG 138 (346)
T ss_pred CCCCceEEEEecccC--cEEEEEEec------cceeeEEEcC---CeEEEEe-cCeEEEEEcCCChhheeeeecccCCCc
Confidence 7999994333 566666543 7899999965 5666665 5789999987 33444444321 223
Q ss_pred eeEEEeC-CCcEEEE-EcCCCeEEEEECCCCCCc-eeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCC
Q 038533 172 VYDICWG-EARVFAS-VSADGSVRIFDLRDKEHS-TIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT 248 (337)
Q Consensus 172 v~~~~~~-~~~~l~~-~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~ 248 (337)
+.+++-. ...+|+. |-.-|.|++-|+...+.. ..+.. .|...|.|++.+. +|..+|+++..|+.|+|||.++ +
T Consensus 139 lC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~--AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~-g 214 (346)
T KOG2111|consen 139 LCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIIN--AHDSDIACVALNL-QGTLVATASTKGTLIRIFDTED-G 214 (346)
T ss_pred eEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEE--cccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCC-C
Confidence 4444444 3444443 456799999999887752 23333 4889999999998 9999999999999999999998 6
Q ss_pred CCeEEeecc--cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCC--C-----C-CCce---------eeeeCCC
Q 038533 249 LPVAELERH--RACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGP--N-----G-IDPM---------SMYSAGS 309 (337)
Q Consensus 249 ~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--~-----~-~~~~---------~~~~~~~ 309 (337)
.++.+++.. ...|.+++|+|+.. +||++|..|+++|+.++....... . . ..+. .+.-..+
T Consensus 215 ~~l~E~RRG~d~A~iy~iaFSp~~s-~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~ 293 (346)
T KOG2111|consen 215 TLLQELRRGVDRADIYCIAFSPNSS-WLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQG 293 (346)
T ss_pred cEeeeeecCCchheEEEEEeCCCcc-EEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCC
Confidence 667777532 34799999999999 999999999999999985442221 0 0 0000 1111234
Q ss_pred ceeEEEEccCCCceEEEEcCCcEE
Q 038533 310 EINQLQWSPAQPDWLAIAFSNKMQ 333 (337)
Q Consensus 310 ~v~~~~~~~~~~~l~~~~~d~~i~ 333 (337)
...-++|-.+.+.+++.+.||.-+
T Consensus 294 ~~~~~~fg~~~nsvi~i~~Dgsy~ 317 (346)
T KOG2111|consen 294 TQCIIAFGSETNTVIAICADGSYY 317 (346)
T ss_pred CcEEEEecCCCCeEEEEEeCCcEE
Confidence 455566766645677777777654
No 208
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=4.6e-17 Score=130.03 Aligned_cols=248 Identities=17% Similarity=0.246 Sum_probs=170.7
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecC------CC------cceecCCCcCCCCCCCCeEEEecCCCCc
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEP------ES------LSIKTHPSLSFDHPYPPTKLMFDPNSSS 84 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~------~~------~~~~~~~~~~~~~~~~i~~i~~~~~~~~ 84 (337)
.|...|+++.|+ |++||+|+. +|.+.+|.... ++ +....... ..+|...|..++|+|++.
T Consensus 63 ~H~~aVN~vRf~p~gelLASg~D----~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~-lr~h~~diydL~Ws~d~~- 136 (434)
T KOG1009|consen 63 RHTRAVNVVRFSPDGELLASGGD----GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKV-LRGHRDDIYDLAWSPDSN- 136 (434)
T ss_pred CCcceeEEEEEcCCcCeeeecCC----CceEEEEEecCcCCccccchhhhCccceEEEEE-ecccccchhhhhccCCCc-
Confidence 468899999999 899999997 99999998761 11 11111112 367999999999999998
Q ss_pred ccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccch
Q 038533 85 RKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVE 162 (337)
Q Consensus 85 ~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~ 162 (337)
++++++ | .+++||+..+ .....+..|. ..+..++|.| .++++++-+.|...+.+.+...+.+
T Consensus 137 --------~l~s~s~dns~~l~Dv~~G--~l~~~~~dh~-----~yvqgvawDp-l~qyv~s~s~dr~~~~~~~~~~~~~ 200 (434)
T KOG1009|consen 137 --------FLVSGSVDNSVRLWDVHAG--QLLAILDDHE-----HYVQGVAWDP-LNQYVASKSSDRHPEGFSAKLKQVI 200 (434)
T ss_pred --------eeeeeeccceEEEEEeccc--eeEeeccccc-----cccceeecch-hhhhhhhhccCcccceeeeeeeeee
Confidence 888888 6 9999999999 6888888888 8999999999 8899999999987777776543322
Q ss_pred hhhh----------c---------cCC----ceeEEEeC-CCcEEEEEcC----CC-----eEEEEECCCCCCceeeecC
Q 038533 163 TQLI----------A---------HDK----EVYDICWG-EARVFASVSA----DG-----SVRIFDLRDKEHSTIIYES 209 (337)
Q Consensus 163 ~~~~----------~---------~~~----~v~~~~~~-~~~~l~~~~~----dg-----~i~iwd~~~~~~~~~~~~~ 209 (337)
.... . |.+ -...++|+ +|.++++... .+ ..++|+-...+.+.. ..
T Consensus 201 ~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~--~l 278 (434)
T KOG1009|consen 201 KRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAA--RL 278 (434)
T ss_pred eeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCcee--ec
Confidence 1111 0 111 13445677 5666665432 22 234444333332222 22
Q ss_pred CCCCCCceEEEeecC-----------------CCcEEEEEEecCCEEEEEECCCCCCCeEE-eecccceeeEEEeCCCCC
Q 038533 210 PQPDTPLLRLAWNKQ-----------------DLRYMATILMDSNKVVILDIRSPTLPVAE-LERHRACVNAIAWAPQSR 271 (337)
Q Consensus 210 ~~~~~~i~~~~~~~~-----------------~~~~l~~~~~d~~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~ 271 (337)
+....+...+.|+|- -+..++.++.+ . |++||.++ ..|+.. -.-|-..++.++|+++|.
T Consensus 279 p~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~-s-vyvydtq~-~~P~~~v~nihy~~iTDiaws~dg~ 355 (434)
T KOG1009|consen 279 PSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKN-S-VYVYDTQT-LEPLAVVDNIHYSAITDIAWSDDGS 355 (434)
T ss_pred CCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecc-e-EEEecccc-ccceEEEeeeeeeeecceeecCCCc
Confidence 223455555655541 22345555555 4 99999998 345544 356888999999999999
Q ss_pred CeEEEEcCCCcEEEEeCCCCCCC
Q 038533 272 RHICSVGDDSQAFIWELPLPPVA 294 (337)
Q Consensus 272 ~~l~~~~~dg~i~iw~~~~~~~~ 294 (337)
+|+..+.||...+-.++..++.
T Consensus 356 -~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 356 -VLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred -EEEEeccCCceEEEEEcchhcc
Confidence 9999999998888777743433
No 209
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.7e-17 Score=133.18 Aligned_cols=195 Identities=23% Similarity=0.342 Sum_probs=151.2
Q ss_pred eEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcE
Q 038533 74 TKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTC 151 (337)
Q Consensus 74 ~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 151 (337)
.+++|+.++. .+++++ | ++|||++... ........|. +.|.+++|+| +++.|++-+.| ..
T Consensus 148 k~vaf~~~gs---------~latgg~dg~lRv~~~Ps~--~t~l~e~~~~-----~eV~DL~FS~-dgk~lasig~d-~~ 209 (398)
T KOG0771|consen 148 KVVAFNGDGS---------KLATGGTDGTLRVWEWPSM--LTILEEIAHH-----AEVKDLDFSP-DGKFLASIGAD-SA 209 (398)
T ss_pred eEEEEcCCCC---------EeeeccccceEEEEecCcc--hhhhhhHhhc-----CccccceeCC-CCcEEEEecCC-ce
Confidence 5788999988 999988 6 9999998877 4555566666 8999999999 99999999999 99
Q ss_pred EEEeCCCccchhhhh--ccCCceeEEEeC-CC-----cEEEEEcCCCeEEEEECCCCCCceee--ecCCCCCCCceEEEe
Q 038533 152 TIWDIEKGVVETQLI--AHDKEVYDICWG-EA-----RVFASVSADGSVRIFDLRDKEHSTII--YESPQPDTPLLRLAW 221 (337)
Q Consensus 152 ~v~d~~~~~~~~~~~--~~~~~v~~~~~~-~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~i~~~~~ 221 (337)
+||+.+++..+.... ........+.|+ ++ ..++.-..-+.|+.||+...+..... .........|.+++.
T Consensus 210 ~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 210 RVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred EEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 999999997666554 223446677787 44 23333445567777777654432111 111122368999999
Q ss_pred ecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 222 NKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 222 ~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
++ +|++++.|+.+|. |.+++..+.......-+.|...|+.+.|+|+.+ ++++.+.|....+..+.
T Consensus 290 S~-dGkf~AlGT~dGs-Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr-~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 290 SD-DGKFLALGTMDGS-VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSR-YLASVSSDNEAAVTKLA 354 (398)
T ss_pred cC-CCcEEEEeccCCc-EEEEEeceeeeeEeehhhheeeeeeEEEcCCcC-cccccccCCceeEEEEe
Confidence 99 9999999999999 999999885554455578999999999999998 99999999999998887
No 210
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=1.7e-15 Score=127.66 Aligned_cols=251 Identities=11% Similarity=0.146 Sum_probs=159.8
Q ss_pred ceeeeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCc
Q 038533 14 NSVTHESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNR 91 (337)
Q Consensus 14 ~~~~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 91 (337)
.+..+...+....++++ +++|++++. .++.|.+|+++. .+.+..... .........+.|+|+++
T Consensus 27 ~~~~~~~~~~~~~l~~spd~~~lyv~~~---~~~~i~~~~~~~-~g~l~~~~~--~~~~~~p~~i~~~~~g~-------- 92 (330)
T PRK11028 27 LLQVVDVPGQVQPMVISPDKRHLYVGVR---PEFRVLSYRIAD-DGALTFAAE--SPLPGSPTHISTDHQGR-------- 92 (330)
T ss_pred eeeEEecCCCCccEEECCCCCEEEEEEC---CCCcEEEEEECC-CCceEEeee--ecCCCCceEEEECCCCC--------
Confidence 34445555667788998 788877653 378999999973 333221111 22334567899999998
Q ss_pred cEEEEeC--C-eEEEEecCCCC-c-cceeeecCCCCCcccCCeeEEEeecCCCCeEEE-eeCCCcEEEEeCCCccchhh-
Q 038533 92 HLLASSG--D-FLRLWDVGDSS-I-EPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT-CSIDTTCTIWDIEKGVVETQ- 164 (337)
Q Consensus 92 ~~l~~~~--~-~v~vw~~~~~~-~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~dg~i~v~d~~~~~~~~~- 164 (337)
++++++ + .|.+|++++.. . +....+.+. ....+++++| +++++++ ...++.|.+||+++...+..
T Consensus 93 -~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~------~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 93 -FLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL------EGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred -EEEEEEcCCCeEEEEEECCCCCCCCceeeccCC------CcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 666654 3 99999997432 1 122222222 3456788999 8777754 45669999999976332211
Q ss_pred ----hh-ccCCceeEEEeC-CCcEEEEEcC-CCeEEEEECCCC--CC--ceeeecCCC---CCCCceEEEeecCCCcEEE
Q 038533 165 ----LI-AHDKEVYDICWG-EARVFASVSA-DGSVRIFDLRDK--EH--STIIYESPQ---PDTPLLRLAWNKQDLRYMA 230 (337)
Q Consensus 165 ----~~-~~~~~v~~~~~~-~~~~l~~~~~-dg~i~iwd~~~~--~~--~~~~~~~~~---~~~~i~~~~~~~~~~~~l~ 230 (337)
.. ........++|+ ++++++++.. ++.|.+||+... +. ...+...+. .......+.++| ++++++
T Consensus 165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~ly 243 (330)
T PRK11028 165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLY 243 (330)
T ss_pred CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEE
Confidence 11 112346789999 7888877766 899999999742 21 111111111 112234688999 999999
Q ss_pred EEEecCCEEEEEECCCCCCCeEEeecc---cceeeEEEeCCCCCCeEEEEc-CCCcEEEEeCC
Q 038533 231 TILMDSNKVVILDIRSPTLPVAELERH---RACVNAIAWAPQSRRHICSVG-DDSQAFIWELP 289 (337)
Q Consensus 231 ~~~~d~~~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~~ 289 (337)
++......|.+|++......+ ++..+ ......+.++|+|+ +|+++. .+++|.+|+++
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~-~~~~~~~~~~~p~~~~~~~dg~-~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVL-SFEGHQPTETQPRGFNIDHSGK-YLIAAGQKSHHISVYEID 304 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeE-EEeEEEeccccCCceEECCCCC-EEEEEEccCCcEEEEEEc
Confidence 986644459999997643322 22222 12456899999999 666555 58999999986
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=4.7e-16 Score=120.71 Aligned_cols=235 Identities=11% Similarity=0.147 Sum_probs=159.7
Q ss_pred CeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeE-EEeeCC--
Q 038533 73 PTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRI-GTCSID-- 148 (337)
Q Consensus 73 i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l-~~~~~d-- 148 (337)
...++|+.|.. -++++.+ -.+||+++--+......+.... -.+..+-|- .+++ ++|+.+
T Consensus 8 ~lsvs~NQD~S---------cFava~~~Gfriyn~~P~ke~~~r~~~~~G-----~~~veMLfR---~N~laLVGGg~~p 70 (346)
T KOG2111|consen 8 TLSVSFNQDHS---------CFAVATDTGFRIYNCDPFKESASRQFIDGG-----FKIVEMLFR---SNYLALVGGGSRP 70 (346)
T ss_pred eeEEEEccCCc---------eEEEEecCceEEEecCchhhhhhhccccCc-----hhhhhHhhh---hceEEEecCCCCC
Confidence 44599999998 9999988 9999998764211111111110 223334442 2333 344332
Q ss_pred ----CcEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECC-CCCCceeeecCCCCCCCceEEEeec
Q 038533 149 ----TTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLR-DKEHSTIIYESPQPDTPLLRLAWNK 223 (337)
Q Consensus 149 ----g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~i~~~~~~~ 223 (337)
..|.|||=...+++.++. ...+|.++.+..+ .+++.- ++.|.+|... +.+....+... .....+.+++-..
T Consensus 71 ky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~-riVvvl-~~~I~VytF~~n~k~l~~~et~-~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 71 KYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRD-RIVVVL-ENKIYVYTFPDNPKLLHVIETR-SNPKGLCSLCPTS 146 (346)
T ss_pred CCCCceEEEEecccCcEEEEEE-eccceeeEEEcCC-eEEEEe-cCeEEEEEcCCChhheeeeecc-cCCCceEeecCCC
Confidence 479999966666666665 5678999999744 444443 5789999998 44544444433 2223455544443
Q ss_pred CCCcEEEEEEecCCEEEEEECCCCCC-CeEEeecccceeeEEEeCCCCCCeEEEEcCCCc-EEEEeCCCCCCCCCCCCCc
Q 038533 224 QDLRYMATILMDSNKVVILDIRSPTL-PVAELERHRACVNAIAWAPQSRRHICSVGDDSQ-AFIWELPLPPVAGPNGIDP 301 (337)
Q Consensus 224 ~~~~~l~~~~~d~~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~ 301 (337)
+..+|+.-+...++|.|-|+..... +-..+.+|...|.+++.+-+|. ++||+|..|+ |||||...++. .
T Consensus 147 -~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~~-------l 217 (346)
T KOG2111|consen 147 -NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGTL-------L 217 (346)
T ss_pred -CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCcE-------e
Confidence 4556666565555699999987443 3467889999999999999999 9999999997 89999995442 2
Q ss_pred eeee--eCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 302 MSMY--SAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 302 ~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
..+. .....|.+++|||+..+|++++.-|+++||.+
T Consensus 218 ~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l 255 (346)
T KOG2111|consen 218 QELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL 255 (346)
T ss_pred eeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence 2222 23457999999999998888888899999975
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.76 E-value=2.9e-18 Score=139.10 Aligned_cols=227 Identities=17% Similarity=0.169 Sum_probs=180.5
Q ss_pred CCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCC
Q 038533 72 PPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT 149 (337)
Q Consensus 72 ~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg 149 (337)
....+.++.+|+ .|+.|+ . .|..+|..+. .+...+..- ..|.++.|-. +.+++|++ ...
T Consensus 131 GPY~~~ytrnGr---------hlllgGrKGHlAa~Dw~t~--~L~~Ei~v~------Etv~Dv~~LH-neq~~AVA-QK~ 191 (545)
T KOG1272|consen 131 GPYHLDYTRNGR---------HLLLGGRKGHLAAFDWVTK--KLHFEINVM------ETVRDVTFLH-NEQFFAVA-QKK 191 (545)
T ss_pred CCeeeeecCCcc---------EEEecCCccceeeeecccc--eeeeeeehh------hhhhhhhhhc-chHHHHhh-hhc
Confidence 457788999998 666555 4 9999999998 444444432 5788999975 77777776 467
Q ss_pred cEEEEeCCCccchhhhhccCCceeEEEeCC-CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcE
Q 038533 150 TCTIWDIEKGVVETQLIAHDKEVYDICWGE-ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRY 228 (337)
Q Consensus 150 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 228 (337)
.++|||- .|..++.++.| ..|..+.|.| .-+|++++..|.++.-|+..++....+... .+.+..++-+| -+..
T Consensus 192 y~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~---~G~~~vm~qNP-~NaV 265 (545)
T KOG1272|consen 192 YVYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG---AGRTDVMKQNP-YNAV 265 (545)
T ss_pred eEEEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc---CCccchhhcCC-ccce
Confidence 9999995 67777777765 4688899996 556778889999999999999977666544 56788888898 7788
Q ss_pred EEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCC
Q 038533 229 MATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAG 308 (337)
Q Consensus 229 l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 308 (337)
+-+|..+|. |.+|.... ..|+..+..|.++|.++++.++|. +++|.+.|..++|||++ ...+ +..... .
T Consensus 266 ih~GhsnGt-VSlWSP~s-kePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR--~~~q-----l~t~~t-p 334 (545)
T KOG1272|consen 266 IHLGHSNGT-VSLWSPNS-KEPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLR--NFYQ-----LHTYRT-P 334 (545)
T ss_pred EEEcCCCce-EEecCCCC-cchHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeec--cccc-----cceeec-C
Confidence 888999988 99999988 677888888999999999999999 99999999999999999 5433 222222 4
Q ss_pred CceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 309 SEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 309 ~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
-+...+++|..| +++.+....+.||+
T Consensus 335 ~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 335 HPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred CCcccccccccc--ceeeecCCeeeeeh
Confidence 567888888775 78888888899995
No 213
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.2e-17 Score=136.87 Aligned_cols=208 Identities=18% Similarity=0.220 Sum_probs=155.3
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCCccceee-ecCCCCCcccCCeeEEEeecCC-CCeE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSSIEPVAV-LNNSKSSEFCAPLTSFDWNEIE-PKRI 142 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~-~~~l 142 (337)
.+|++.|+|++|+.+|. +|++|+| .+.|||.-.. +++.. -.+|. +.|.++.|-|.. ..++
T Consensus 47 ~GH~GCVN~LeWn~dG~---------lL~SGSDD~r~ivWd~~~~--KllhsI~TgHt-----aNIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGE---------LLASGSDDTRLIVWDPFEY--KLLHSISTGHT-----ANIFSVKFVPYTNNRIV 110 (758)
T ss_pred ccccceecceeecCCCC---------EEeecCCcceEEeecchhc--ceeeeeecccc-----cceeEEeeeccCCCeEE
Confidence 79999999999999999 9999996 9999999866 44443 34677 999999999853 4588
Q ss_pred EEeeCCCcEEEEeCCCc----------cchhhhhccCCceeEEEeCC--CcEEEEEcCCCeEEEEECCCCCCceeee---
Q 038533 143 GTCSIDTTCTIWDIEKG----------VVETQLIAHDKEVYDICWGE--ARVFASVSADGSVRIFDLRDKEHSTIIY--- 207 (337)
Q Consensus 143 ~~~~~dg~i~v~d~~~~----------~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~--- 207 (337)
++|..|..|+++|+... +....+..|...|..++..| .+.+.++++||+|+-+|+|.......-.
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~ 190 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP 190 (758)
T ss_pred EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc
Confidence 89999999999999742 24556678889999998883 4799999999999999999864322111
Q ss_pred ----cCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCC-----------------CeEEe-eccc-------
Q 038533 208 ----ESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTL-----------------PVAEL-ERHR------- 258 (337)
Q Consensus 208 ----~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~-----------------~~~~~-~~~~------- 258 (337)
.....--...|+..+|.+..+|++|+.+.. .++||.|...+ ++..+ .+|.
T Consensus 191 ~~l~ny~~~lielk~ltisp~rp~~laVGgsdpf-arLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~ 269 (758)
T KOG1310|consen 191 SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPF-ARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNL 269 (758)
T ss_pred HHHHHhchhhheeeeeeecCCCCceEEecCCCch-hhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccc
Confidence 111122456889999988999999999998 99999542111 11111 1221
Q ss_pred ----ceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCC
Q 038533 259 ----ACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPP 292 (337)
Q Consensus 259 ----~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 292 (337)
..++-+.|+|+|..+|++-+. -.|+++|+...+
T Consensus 270 ~~~~~~~t~vtfnpNGtElLvs~~g-EhVYlfdvn~~~ 306 (758)
T KOG1310|consen 270 DRYITCCTYVTFNPNGTELLVSWGG-EHVYLFDVNEDK 306 (758)
T ss_pred ccceeeeEEEEECCCCcEEEEeeCC-eEEEEEeecCCC
Confidence 125668999999856666554 479999998443
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.74 E-value=3.4e-16 Score=129.47 Aligned_cols=250 Identities=19% Similarity=0.262 Sum_probs=165.6
Q ss_pred ceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C
Q 038533 23 PLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D 99 (337)
Q Consensus 23 ~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~ 99 (337)
.+....++ |++|+..- ...+.+|++..............+.- ....|=+|..... ..+.-.+|+.-. +
T Consensus 125 ~~~~~~~~~~gd~lcFnv-----g~~lyv~~~~g~~~~~~pi~k~~y~g-t~P~cHdfn~~~a---~~~g~dllIGf~tG 195 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-----GRELYVYSYRGAADLSKPIDKREYKG-TSPTCHDFNSFTA---TPKGLDLLIGFTTG 195 (636)
T ss_pred ceeeccccCCCCEEEEec-----CCeEEEEEccCcchhccchhhhcccC-CCCceeccccccc---CCCCcceEEeeccC
Confidence 34455555 77887766 56788888875332211100111111 1223334422111 011113444433 3
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCc--------------------
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKG-------------------- 159 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-------------------- 159 (337)
.|.+.|....+. .+.+....... ...|+|+.|-|.+...++++-.+|.+++||.+-.
T Consensus 196 qvq~idp~~~~~--sklfne~r~i~-ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~ 272 (636)
T KOG2394|consen 196 QVQLIDPINFEV--SKLFNEERLIN-KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAIL 272 (636)
T ss_pred ceEEecchhhHH--HHhhhhccccc-ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEe
Confidence 777777665422 22121111011 1689999999988889999999999999976421
Q ss_pred --------cchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEE
Q 038533 160 --------VVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMA 230 (337)
Q Consensus 160 --------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 230 (337)
.++..+.-..+.|+..+|+ ++++||+.+.||.++|||..+.+....... .-+.+.|++|+| |++|++
T Consensus 273 t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS---YFGGLLCvcWSP-DGKyIv 348 (636)
T KOG2394|consen 273 TSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS---YFGGLLCVCWSP-DGKYIV 348 (636)
T ss_pred eeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh---hccceEEEEEcC-CccEEE
Confidence 0111111234568899999 899999999999999999998875443322 236899999999 999999
Q ss_pred EEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCC-----------------------------------C-----
Q 038533 231 TILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQ-----------------------------------S----- 270 (337)
Q Consensus 231 ~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------------------------~----- 270 (337)
+|++|.- |.||.+.. ++.+..-++|...|+.++|.|- +
T Consensus 349 tGGEDDL-VtVwSf~e-rRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~ 426 (636)
T KOG2394|consen 349 TGGEDDL-VTVWSFEE-RRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSS 426 (636)
T ss_pred ecCCcce-EEEEEecc-ceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccc
Confidence 9999998 99999987 6778888999999999999830 1
Q ss_pred -------CCeEEEEcCCCcEEEEeCCC
Q 038533 271 -------RRHICSVGDDSQAFIWELPL 290 (337)
Q Consensus 271 -------~~~l~~~~~dg~i~iw~~~~ 290 (337)
.+.|.+.+.|-.+.+||+..
T Consensus 427 ~~~~~~v~YRfGSVGqDTqlcLWDlte 453 (636)
T KOG2394|consen 427 FNRINSVTYRFGSVGQDTQLCLWDLTE 453 (636)
T ss_pred cccccceEEEeecccccceEEEEecch
Confidence 23577888999999999984
No 215
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.6e-15 Score=126.52 Aligned_cols=283 Identities=16% Similarity=0.185 Sum_probs=193.0
Q ss_pred ceeeeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCc
Q 038533 14 NSVTHESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNR 91 (337)
Q Consensus 14 ~~~~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 91 (337)
.+..|.++...+.|..+ |+|+.+.+. |.-.|++|++..-...+.. .--...|.-.-.+.|-.
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~---YKP~ikvydlanLSLKFER-----hlDae~V~feiLsDD~S-------- 107 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGT---YKPQIKVYDLANLSLKFER-----HLDAEVVDFEILSDDYS-------- 107 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecc---cCCceEEEEcccceeeeee-----cccccceeEEEeccchh--------
Confidence 44557778888899999 776544443 5999999998876666654 11223344444444443
Q ss_pred cEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCC
Q 038533 92 HLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDK 170 (337)
Q Consensus 92 ~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 170 (337)
..+.-..| +|.+..-... .....++ ..-.+++++..+..+++.|+ ...|+-++++.|+.+..+....+
T Consensus 108 K~v~L~~DR~IefHak~G~--hy~~RIP--------~~GRDm~y~~~scDly~~gs-g~evYRlNLEqGrfL~P~~~~~~ 176 (703)
T KOG2321|consen 108 KSVFLQNDRTIEFHAKYGR--HYRTRIP--------KFGRDMKYHKPSCDLYLVGS-GSEVYRLNLEQGRFLNPFETDSG 176 (703)
T ss_pred hheEeecCceeeehhhcCe--eeeeecC--------cCCccccccCCCccEEEeec-CcceEEEEccccccccccccccc
Confidence 23333445 6655432222 1111111 23446777664556666555 46788899999999999988889
Q ss_pred ceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCC---C-----CCCceEEEeecCCCcEEEEEEecCCEEEE
Q 038533 171 EVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQ---P-----DTPLLRLAWNKQDLRYMATILMDSNKVVI 241 (337)
Q Consensus 171 ~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~-----~~~i~~~~~~~~~~~~l~~~~~d~~~i~i 241 (337)
.++++..+ -..+|++|+.+|.+.+||.|.......+..... + ...++++.|+. +|-.+++|+.+|. +.|
T Consensus 177 ~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~-v~i 254 (703)
T KOG2321|consen 177 ELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGS-VLI 254 (703)
T ss_pred cceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCc-EEE
Confidence 99999999 577888899999999999998876555433211 2 23499999997 7999999999999 999
Q ss_pred EECCCCCCCeEEe-ecccceeeEEEeCCCCCC-eEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccC
Q 038533 242 LDIRSPTLPVAEL-ERHRACVNAIAWAPQSRR-HICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPA 319 (337)
Q Consensus 242 ~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 319 (337)
||+|. .+|+..- .+...+|..+.|.+.+.. .+++. ....++|||-..++ +.........++.+++-|+
T Consensus 255 yDLRa-~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk--------~~asiEpt~~lND~C~~p~ 324 (703)
T KOG2321|consen 255 YDLRA-SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGK--------PMASIEPTSDLNDFCFVPG 324 (703)
T ss_pred EEccc-CCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCC--------ceeeccccCCcCceeeecC
Confidence 99998 5554332 333458999999876432 44444 45689999998443 4445555667999999999
Q ss_pred CCceEEEEcCCcEEEE
Q 038533 320 QPDWLAIAFSNKMQLL 335 (337)
Q Consensus 320 ~~~l~~~~~d~~i~iw 335 (337)
+.+++++-.++.+..+
T Consensus 325 sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 325 SGMFFTANESSKMHTY 340 (703)
T ss_pred CceEEEecCCCcceeE
Confidence 8888887777666544
No 216
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.5e-15 Score=117.32 Aligned_cols=239 Identities=16% Similarity=0.212 Sum_probs=163.1
Q ss_pred CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC
Q 038533 21 PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG 98 (337)
Q Consensus 21 ~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~ 98 (337)
+-.+.-++|+ -..+|++.+ |..|++|+-...... .+.......|+|++|-|.+. .-|+.|.
T Consensus 98 ~~dlr~~aWhqH~~~fava~n----ddvVriy~ksst~pt-----~Lks~sQrnvtclawRPlsa--------selavgC 160 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATN----DDVVRIYDKSSTCPT-----KLKSVSQRNVTCLAWRPLSA--------SELAVGC 160 (445)
T ss_pred hcceeeEeechhhhhhhhhcc----CcEEEEeccCCCCCc-----eecchhhcceeEEEeccCCc--------ceeeeee
Confidence 3457888998 566778887 999999876552211 22355667899999999887 5788888
Q ss_pred C-eEEEEecCCCCc--c--------ceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC-CCcEEEEeCCCccchhhhh
Q 038533 99 D-FLRLWDVGDSSI--E--------PVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI-DTTCTIWDIEKGVVETQLI 166 (337)
Q Consensus 99 ~-~v~vw~~~~~~~--~--------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~~~~ 166 (337)
. .|.+|.....-. + ....++ ..++ .+|++++|++ ++..+++++. |..|.|||..++..+....
T Consensus 161 r~gIciW~~s~tln~~r~~~~~s~~~~qvl~---~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~ 235 (445)
T KOG2139|consen 161 RAGICIWSDSRTLNANRNIRMMSTHHLQVLQ---DPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIP 235 (445)
T ss_pred cceeEEEEcCcccccccccccccccchhhee---CCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccc
Confidence 6 999998764210 1 111111 1122 6899999998 9999998874 6689999999988665554
Q ss_pred ccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCC-CCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEEC
Q 038533 167 AHDKEVYDICWG-EARVFASVSADGSVRIFDLRDK-EHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI 244 (337)
Q Consensus 167 ~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~ 244 (337)
...+.+.-+.|+ ++++|+.+.-|+..++|..... ...+-.. ..+.|...+|+| .|..|+...... -++|.+
T Consensus 236 ~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l----gsgrvqtacWsp-cGsfLLf~~sgs--p~lysl 308 (445)
T KOG2139|consen 236 KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL----GSGRVQTACWSP-CGSFLLFACSGS--PRLYSL 308 (445)
T ss_pred cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec----cCCceeeeeecC-CCCEEEEEEcCC--ceEEEE
Confidence 456678899999 7999999999999999965433 3222222 235899999999 777766555443 344444
Q ss_pred CCCCCCe--------------EEee-----c----ccceeeEEEeCCCCCCeEEEEcCCC--------cEEEEeCC
Q 038533 245 RSPTLPV--------------AELE-----R----HRACVNAIAWAPQSRRHICSVGDDS--------QAFIWELP 289 (337)
Q Consensus 245 ~~~~~~~--------------~~~~-----~----~~~~v~~~~~~~~~~~~l~~~~~dg--------~i~iw~~~ 289 (337)
...+++. ..+. . -.+++.+++|.|.|. +||+.-..+ .|.+||.+
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe-yLav~fKg~~~v~~~k~~i~~fdtr 383 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE-YLAVIFKGQSFVLLCKLHISRFDTR 383 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCC-EEEEEEcCCchhhhhhhhhhhhccc
Confidence 3222110 0010 1 135788999999999 888765433 36677776
No 217
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=4.3e-16 Score=124.06 Aligned_cols=200 Identities=16% Similarity=0.201 Sum_probs=154.1
Q ss_pred CCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCC--ccceeeecCCCCCcccCCeeEEEeecCCCCeEEEe
Q 038533 69 HPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSS--IEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTC 145 (337)
Q Consensus 69 ~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 145 (337)
...+|..++.. ++. ++++-++ .+.+|....+. -..+..+..+ ..+..+.-++....++++|
T Consensus 104 ~~~~I~gl~~~-dg~---------Litc~~sG~l~~~~~k~~d~hss~l~~la~g------~g~~~~r~~~~~p~Iva~G 167 (412)
T KOG3881|consen 104 GTKSIKGLKLA-DGT---------LITCVSSGNLQVRHDKSGDLHSSKLIKLATG------PGLYDVRQTDTDPYIVATG 167 (412)
T ss_pred ccccccchhhc-CCE---------EEEEecCCcEEEEeccCCccccccceeeecC------CceeeeccCCCCCceEecC
Confidence 34556666554 333 4444444 99999998553 2333444443 4566777777677888889
Q ss_pred eCC--CcEEEEeCCCccchhhhhc---------cCCceeEEEeC-C--CcEEEEEcCCCeEEEEECCCCCCceeeecCCC
Q 038533 146 SID--TTCTIWDIEKGVVETQLIA---------HDKEVYDICWG-E--ARVFASVSADGSVRIFDLRDKEHSTIIYESPQ 211 (337)
Q Consensus 146 ~~d--g~i~v~d~~~~~~~~~~~~---------~~~~v~~~~~~-~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 211 (337)
+.. ..+.+||++..+.+..-+. -.-.++++.|. + ...|++++.-+.+++||.+.++.+...+..
T Consensus 168 Gke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-- 245 (412)
T KOG3881|consen 168 GKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-- 245 (412)
T ss_pred chhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc--
Confidence 998 8999999998765443331 12246788888 3 689999999999999999988776665555
Q ss_pred CCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 212 PDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 212 ~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
.+.+++++...| .++.++++...+. +..||++....+...+.+-.+.|+++..+|.++ ++++++-|..+||+|+.
T Consensus 246 ~E~~is~~~l~p-~gn~Iy~gn~~g~-l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 246 LENPISSTGLTP-SGNFIYTGNTKGQ-LAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIK 320 (412)
T ss_pred ccCcceeeeecC-CCcEEEEecccch-hheecccCceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeecc
Confidence 467999999999 9999999999998 999999985544455888889999999999999 99999999999999999
No 218
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.6e-15 Score=118.62 Aligned_cols=232 Identities=14% Similarity=0.219 Sum_probs=158.6
Q ss_pred CCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC
Q 038533 70 PYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI 147 (337)
Q Consensus 70 ~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 147 (337)
+-.+..++|++.-. .+|++. | .|++|+-... +...++... ...|+|++|-|..+..|+.|..
T Consensus 98 ~~dlr~~aWhqH~~---------~fava~nddvVriy~ksst---~pt~Lks~s----QrnvtclawRPlsaselavgCr 161 (445)
T KOG2139|consen 98 EIDLRGVAWHQHII---------AFAVATNDDVVRIYDKSST---CPTKLKSVS----QRNVTCLAWRPLSASELAVGCR 161 (445)
T ss_pred hcceeeEeechhhh---------hhhhhccCcEEEEeccCCC---CCceecchh----hcceeEEEeccCCcceeeeeec
Confidence 34577899999765 666666 5 9999997774 333333221 1679999999977788888876
Q ss_pred CCcEEEEeCCCc----cc----------hhhhhccCCceeEEEeC-CCcEEEEEcC-CCeEEEEECCCCCCceeeecCCC
Q 038533 148 DTTCTIWDIEKG----VV----------ETQLIAHDKEVYDICWG-EARVFASVSA-DGSVRIFDLRDKEHSTIIYESPQ 211 (337)
Q Consensus 148 dg~i~v~d~~~~----~~----------~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~ 211 (337)
+-|.+|..... +. +....+| .+|+++.|+ ++..+++++. |..|.+||..++........
T Consensus 162 -~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--- 236 (445)
T KOG2139|consen 162 -AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--- 236 (445)
T ss_pred -ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc---
Confidence 55899975421 11 1112244 679999999 8888888875 67799999999987666532
Q ss_pred CCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCC
Q 038533 212 PDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLP 291 (337)
Q Consensus 212 ~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 291 (337)
..+.+.-+.|+| ++.+|+++.-|+. .++|.........+-.. ..+.|...+|+|+|..+|++.+.. -++|.+..+
T Consensus 237 glgg~slLkwSP-dgd~lfaAt~dav-frlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgs--p~lysl~f~ 311 (445)
T KOG2139|consen 237 GLGGFSLLKWSP-DGDVLFAATCDAV-FRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGS--PRLYSLTFD 311 (445)
T ss_pred CCCceeeEEEcC-CCCEEEEecccce-eeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCC--ceEEEEeec
Confidence 246788999999 9999999999998 99996554333232232 345899999999999667777644 445555432
Q ss_pred CCC----CCCCCCceeee-------------eCCCceeEEEEccCCCceEEEE
Q 038533 292 PVA----GPNGIDPMSMY-------------SAGSEINQLQWSPAQPDWLAIA 327 (337)
Q Consensus 292 ~~~----~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~~ 327 (337)
... ++.+.....+. ...+++.+++|.|.|.+|++.=
T Consensus 312 ~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 312 GEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred CCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 211 11111111111 1246789999999998887653
No 219
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.71 E-value=2e-15 Score=117.87 Aligned_cols=266 Identities=15% Similarity=0.255 Sum_probs=167.6
Q ss_pred CceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-
Q 038533 22 YPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG- 98 (337)
Q Consensus 22 ~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~- 98 (337)
+.|.-+.|. .-+++++.. .++.|.+|++....--... ..-..++.+++|+|+++ ++|.+..
T Consensus 49 dki~yieW~ads~~ilC~~y---k~~~vqvwsl~Qpew~ckI-----deg~agls~~~WSPdgr--------hiL~tseF 112 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAY---KDPKVQVWSLVQPEWYCKI-----DEGQAGLSSISWSPDGR--------HILLTSEF 112 (447)
T ss_pred HHhhheeeeccceeeeeeee---ccceEEEEEeecceeEEEe-----ccCCCcceeeeECCCcc--------eEeeeecc
Confidence 446667888 334444332 3889999999877655554 55677899999999998 5777766
Q ss_pred C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCC---CccchhhhhccCCceeE
Q 038533 99 D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIE---KGVVETQLIAHDKEVYD 174 (337)
Q Consensus 99 ~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~---~~~~~~~~~~~~~~v~~ 174 (337)
+ .|.||.+.+.+. ..++..+ ..+..++|+| ++++.+.+++-.....+.+. .-..++.++...-..+.
T Consensus 113 ~lriTVWSL~t~~~---~~~~~pK-----~~~kg~~f~~-dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dltg 183 (447)
T KOG4497|consen 113 DLRITVWSLNTQKG---YLLPHPK-----TNVKGYAFHP-DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTG 183 (447)
T ss_pred eeEEEEEEecccee---EEecccc-----cCceeEEECC-CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccC
Confidence 6 999999998742 2233333 4568899999 99998888754222222221 22234444444555677
Q ss_pred EEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCC-------
Q 038533 175 ICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRS------- 246 (337)
Q Consensus 175 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~------- 246 (337)
+.|+ +|+.++ +||.--.-... .++ -.-.+..++|+| .+++|++|+.|+. +++.+--+
T Consensus 184 ieWsPdg~~la---------Vwd~~Leykv~-aYe---~~lG~k~v~wsP-~~qflavGsyD~~-lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 184 IEWSPDGNWLA---------VWDNVLEYKVY-AYE---RGLGLKFVEWSP-CNQFLAVGSYDQM-LRVLNHFTWKPFGEF 248 (447)
T ss_pred ceECCCCcEEE---------Eecchhhheee-eee---eccceeEEEecc-ccceEEeeccchh-hhhhceeeeeehhhh
Confidence 7777 455444 44432111000 111 124567777887 7788888887776 66543110
Q ss_pred --------CC------------------------------------------CC--eEE------eecccceeeEEEeCC
Q 038533 247 --------PT------------------------------------------LP--VAE------LERHRACVNAIAWAP 268 (337)
Q Consensus 247 --------~~------------------------------------------~~--~~~------~~~~~~~v~~~~~~~ 268 (337)
+. .+ +.. +......+..++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 00 00 000 111123567799999
Q ss_pred CCCCeEEEEcCC--CcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 269 QSRRHICSVGDD--SQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 269 ~~~~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
|.. +++|-.+. +.+-+||++ .+. .........+|....|+|..+.|+.+.....+++|-
T Consensus 329 Ds~-y~aTrnd~~PnalW~Wdlq--~l~------l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 329 DST-YAATRNDKYPNALWLWDLQ--NLK------LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred Cce-EEeeecCCCCceEEEEech--hhh------hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 998 88887643 579999999 322 223334567899999999999999888888899884
No 220
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=3.4e-15 Score=129.70 Aligned_cols=205 Identities=13% Similarity=0.146 Sum_probs=137.5
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCC---CcEEEEeCCCccc--hhhhhccCCceeE
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSID---TTCTIWDIEKGVV--ETQLIAHDKEVYD 174 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~v~d~~~~~~--~~~~~~~~~~v~~ 174 (337)
.|.+||..... ...+..+. ..+...+|+| +++.|+.++.+ ..|++||+.+++. +..+.++ ...
T Consensus 185 ~i~i~d~dg~~---~~~lt~~~-----~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~ 252 (429)
T PRK01742 185 EVRVADYDGFN---QFIVNRSS-----QPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGA 252 (429)
T ss_pred EEEEECCCCCC---ceEeccCC-----CccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCc
Confidence 89999987763 34455555 7899999999 99988887643 3699999988753 3333333 446
Q ss_pred EEeC-CCcEEEEEc-CCCeEEEE--ECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEE-ecCCEEEEEECCCCCC
Q 038533 175 ICWG-EARVFASVS-ADGSVRIF--DLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATIL-MDSNKVVILDIRSPTL 249 (337)
Q Consensus 175 ~~~~-~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~~i~i~d~~~~~~ 249 (337)
++|+ +++.|+.++ .+|.+.|| |+.+++.. .+. .+...+....|+| +++.|+..+ .++. ..+|++.....
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt---~~~~~~~~~~wSp-DG~~i~f~s~~~g~-~~I~~~~~~~~ 326 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS-QLT---SGAGNNTEPSWSP-DGQSILFTSDRSGS-PQVYRMSASGG 326 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCCCCeE-eec---cCCCCcCCEEECC-CCCEEEEEECCCCC-ceEEEEECCCC
Confidence 8999 788777664 67766555 66555432 222 2345678899999 888777655 4555 78887754333
Q ss_pred CeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcC
Q 038533 250 PVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFS 329 (337)
Q Consensus 250 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 329 (337)
....+ .+.. ....|+|+|+ .|+..+.++ +.+||+..+. ...+... .....+.|+|+|+.++.++.+
T Consensus 327 ~~~~l-~~~~--~~~~~SpDG~-~ia~~~~~~-i~~~Dl~~g~--------~~~lt~~-~~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 327 GASLV-GGRG--YSAQISADGK-TLVMINGDN-VVKQDLTSGS--------TEVLSST-FLDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CeEEe-cCCC--CCccCCCCCC-EEEEEcCCC-EEEEECCCCC--------eEEecCC-CCCCCceECCCCCEEEEEEcC
Confidence 33333 3333 4578999999 777777654 5668987322 1111111 123567899999999998888
Q ss_pred CcEEEEe
Q 038533 330 NKMQLLK 336 (337)
Q Consensus 330 ~~i~iw~ 336 (337)
+...+|.
T Consensus 393 g~~~~l~ 399 (429)
T PRK01742 393 GLGKVLQ 399 (429)
T ss_pred CCceEEE
Confidence 8888775
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.70 E-value=2.5e-14 Score=124.07 Aligned_cols=233 Identities=13% Similarity=0.176 Sum_probs=152.3
Q ss_pred ceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC----C-eEEEEecCCCCccceeeecC
Q 038533 45 NRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG----D-FLRLWDVGDSSIEPVAVLNN 119 (337)
Q Consensus 45 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~----~-~v~vw~~~~~~~~~~~~~~~ 119 (337)
..|.++|.+....... ..+...+...+|+||++ .|+..+ + .+.+|++.+++.+.+..+.+
T Consensus 179 ~~l~~~d~dg~~~~~l------t~~~~~~~~p~wSPDG~---------~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~ 243 (429)
T PRK03629 179 YELRVSDYDGYNQFVV------HRSPQPLMSPAWSPDGS---------KLAYVTFESGRSALVIQTLANGAVRQVASFPR 243 (429)
T ss_pred eeEEEEcCCCCCCEEe------ecCCCceeeeEEcCCCC---------EEEEEEecCCCcEEEEEECCCCCeEEccCCCC
Confidence 3566666654433222 35667899999999998 666432 3 89999998885444433333
Q ss_pred CCCCcccCCeeEEEeecCCCCeEEEe-eCCC--cEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCC-Ce--E
Q 038533 120 SKSSEFCAPLTSFDWNEIEPKRIGTC-SIDT--TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSAD-GS--V 192 (337)
Q Consensus 120 ~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-g~--i 192 (337)
.+...+|+| +++.|+.. +.+| .|++||+++++... +..+...+....|+ +++.|+..+.+ +. |
T Consensus 244 --------~~~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~I 313 (429)
T PRK03629 244 --------HNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQV 313 (429)
T ss_pred --------CcCCeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceE
Confidence 344689999 88877754 4455 58899998876443 33344567889999 78878766654 44 4
Q ss_pred EEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecC--CEEEEEECCCCCCCeEEeecccceeeEEEeCCCC
Q 038533 193 RIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDS--NKVVILDIRSPTLPVAELERHRACVNAIAWAPQS 270 (337)
Q Consensus 193 ~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 270 (337)
..+|+.+++...... .........|+| ++++++..+.++ ..|.+||+.+. . ...+... .......|+|+|
T Consensus 314 y~~d~~~g~~~~lt~----~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~~Lt~~-~~~~~p~~SpDG 385 (429)
T PRK03629 314 YKVNINGGAPQRITW----EGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATG-G-VQVLTDT-FLDETPSIAPNG 385 (429)
T ss_pred EEEECCCCCeEEeec----CCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCC-C-eEEeCCC-CCCCCceECCCC
Confidence 455666654322221 123456788999 899888766543 24888998763 2 3344321 234567899999
Q ss_pred CCeEEEEcCCCc---EEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccC
Q 038533 271 RRHICSVGDDSQ---AFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPA 319 (337)
Q Consensus 271 ~~~l~~~~~dg~---i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 319 (337)
+ +|+.++.++. +.+++++ +.....+..|...+...+|+|-
T Consensus 386 ~-~i~~~s~~~~~~~l~~~~~~--------G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 386 T-MVIYSSSQGMGSVLNLVSTD--------GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred C-EEEEEEcCCCceEEEEEECC--------CCCeEECccCCCCcCCcccCCC
Confidence 9 7777776654 6667776 2234455667888999999984
No 222
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=9.1e-15 Score=131.99 Aligned_cols=253 Identities=11% Similarity=0.108 Sum_probs=168.3
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCC-----ccceeeecCCCCCcccCCeeEEEeecCCC
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSS-----IEPVAVLNNSKSSEFCAPLTSFDWNEIEP 139 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 139 (337)
..|...+..++.++... .++++|++ +|++|++..-. .+...++.... .++.++.+.+ .+
T Consensus 1045 ~Ehs~~v~k~a~s~~~~--------s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~-----sr~~~vt~~~-~~ 1110 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHT--------SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEG-----SRVEKVTMCG-NG 1110 (1431)
T ss_pred hhccccccceeecCCCC--------ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccC-----CceEEEEecc-CC
Confidence 67888899999887773 39999994 99999987532 12233333222 7888999887 89
Q ss_pred CeEEEeeCCCcEEEEeCCCcc-------chhhhhcc-CCceeE-EEeC--CCc-EEEEEcCCCeEEEEECCCCCCceeee
Q 038533 140 KRIGTCSIDTTCTIWDIEKGV-------VETQLIAH-DKEVYD-ICWG--EAR-VFASVSADGSVRIFDLRDKEHSTIIY 207 (337)
Q Consensus 140 ~~l~~~~~dg~i~v~d~~~~~-------~~~~~~~~-~~~v~~-~~~~--~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~ 207 (337)
+.+|+++.||.|++.++.... ..+....+ .+.+.+ -++. ... .++.+..-+.|..||+++........
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence 999999999999999987621 11111112 233333 3343 344 78888999999999999887554443
Q ss_pred cCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEee-cccceeeEEEeCCCCC--CeEEEEc--CCCc
Q 038533 208 ESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELE-RHRACVNAIAWAPQSR--RHICSVG--DDSQ 282 (337)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~--~~l~~~~--~dg~ 282 (337)
.. ...+.|++++.+| .+++++.|+..|. +.+||+|- +.++.... .+..+++.+..+|-.+ ...++++ ..+.
T Consensus 1191 ~~-~~hG~vTSi~idp-~~~WlviGts~G~-l~lWDLRF-~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ne 1266 (1431)
T KOG1240|consen 1191 NQ-LRHGLVTSIVIDP-WCNWLVIGTSRGQ-LVLWDLRF-RVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNE 1266 (1431)
T ss_pred cC-ccccceeEEEecC-CceEEEEecCCce-EEEEEeec-CceeecccCcccCCcceEEeeccCCCCceEEEecccCCCc
Confidence 33 2347899999999 8899999999998 99999997 55665543 3456788887776433 2444444 5778
Q ss_pred EEEEeCCCCCCCCCC----CCCceeee--------eCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 283 AFIWELPLPPVAGPN----GIDPMSMY--------SAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 283 i~iw~~~~~~~~~~~----~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
|.+|++..+...... +...+... .+.-......+..-+..+++++.|..|+.||.
T Consensus 1267 vs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1267 VSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred eeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 999999944211100 00000000 11112233344444557889999999999984
No 223
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=6.3e-15 Score=117.51 Aligned_cols=245 Identities=14% Similarity=0.184 Sum_probs=179.2
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEe-CC-eEEEEecCCCCcccee----eecCCCCCcccCCeeEEEeecCCCC
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASS-GD-FLRLWDVGDSSIEPVA----VLNNSKSSEFCAPLTSFDWNEIEPK 140 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~-~~-~v~vw~~~~~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~ 140 (337)
..-...|..++|.-++. .+.+..+ .+ .+..+.+....+.... .....+ ++|..++.. ..
T Consensus 52 ~~~~~ris~l~~~~d~~-------tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~-----~~I~gl~~~---dg 116 (412)
T KOG3881|consen 52 VDELDRISSLLFGVDGE-------TEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGT-----KSIKGLKLA---DG 116 (412)
T ss_pred cchhhhhhhheeecCCc-------eeEeeccccCcccccccccCCcccccccccccccccc-----ccccchhhc---CC
Confidence 34556788999986654 2355555 34 8888877766322211 223333 678777763 35
Q ss_pred eEEEeeCCCcEEEEeCCCcc----chhhhhccCCceeEEEeC--CCcEEEEEcCC--CeEEEEECCCCCCceeeecCCC-
Q 038533 141 RIGTCSIDTTCTIWDIEKGV----VETQLIAHDKEVYDICWG--EARVFASVSAD--GSVRIFDLRDKEHSTIIYESPQ- 211 (337)
Q Consensus 141 ~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~- 211 (337)
.|++|-.+|.+.+|..+.+. .+..+..+ ..+..+.-+ ....+++|+.. ..+++||+.+.+.+-.-...+.
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD 195 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPND 195 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCc
Confidence 78888889999999987543 22333323 456666666 36678889998 8899999998742222111111
Q ss_pred -----CCCCceEEEeecCC--CcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEE
Q 038533 212 -----PDTPLLRLAWNKQD--LRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAF 284 (337)
Q Consensus 212 -----~~~~i~~~~~~~~~--~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 284 (337)
-.-.++++.|-+ . ...|++++.-+. +++||.+..++|+..+.....+++++...|+++ ++++|..-|.+.
T Consensus 196 ~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hq-vR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn-~Iy~gn~~g~l~ 272 (412)
T KOG3881|consen 196 RLGLRVPVWITDIRFLE-GSPNYKFATITRYHQ-VRLYDTRHQRRPVAQFDFLENPISSTGLTPSGN-FIYTGNTKGQLA 272 (412)
T ss_pred cccceeeeeeccceecC-CCCCceEEEEeccee-EEEecCcccCcceeEeccccCcceeeeecCCCc-EEEEecccchhh
Confidence 123467788887 4 678899988887 999999998999999988889999999999999 999999999999
Q ss_pred EEeCCCCCCCCCCCCCce-eeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 285 IWELPLPPVAGPNGIDPM-SMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 285 iw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
.||++.+. ... .+.+..+.|.++..+|..+.+++++-|..|||+++
T Consensus 273 ~FD~r~~k-------l~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 273 KFDLRGGK-------LLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred eecccCce-------eeccccCCccCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 99999322 122 35677889999999999999999999999999985
No 224
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=3.2e-14 Score=123.47 Aligned_cols=219 Identities=15% Similarity=0.229 Sum_probs=137.2
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC----C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCe
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG----D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKR 141 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~----~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 141 (337)
..+...+.+.+|+|+++ .|+..+ . .|.+||+.+++...+..+. ..+...+|+| +++.
T Consensus 192 ~~~~~~v~~p~wSPDG~---------~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~--------g~~~~~~~SP-DG~~ 253 (427)
T PRK02889 192 LSSPEPIISPAWSPDGT---------KLAYVSFESKKPVVYVHDLATGRRRVVANFK--------GSNSAPAWSP-DGRT 253 (427)
T ss_pred ccCCCCcccceEcCCCC---------EEEEEEccCCCcEEEEEECCCCCEEEeecCC--------CCccceEECC-CCCE
Confidence 46677899999999998 666544 2 7999999988533322222 3456889999 8887
Q ss_pred EE-EeeCCCcEEEEe--CCCccchhhhhccCCceeEEEeC-CCcEEEEEcC-CCeEEEEEC--CCCCCceeeecCCCCCC
Q 038533 142 IG-TCSIDTTCTIWD--IEKGVVETQLIAHDKEVYDICWG-EARVFASVSA-DGSVRIFDL--RDKEHSTIIYESPQPDT 214 (337)
Q Consensus 142 l~-~~~~dg~i~v~d--~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~i~iwd~--~~~~~~~~~~~~~~~~~ 214 (337)
|+ +.+.+|...+|. +..+. ...+..+........|+ +++.++..+. +|...+|.+ .+++....... ..
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~----g~ 328 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFT----GS 328 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecC----CC
Confidence 76 567788766665 44443 44454455556778899 7887776554 456666655 44432222211 12
Q ss_pred CceEEEeecCCCcEEEEEEecCC--EEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEc-CCCcEEEEeCCCC
Q 038533 215 PLLRLAWNKQDLRYMATILMDSN--KVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVG-DDSQAFIWELPLP 291 (337)
Q Consensus 215 ~i~~~~~~~~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~ 291 (337)
......|+| ++++++..+.++. .|.+||+.+. . ...+... .......|+|+++ .|+.++ ..|.-.++-+...
T Consensus 329 ~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g-~-~~~lt~~-~~~~~p~~spdg~-~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 329 YNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATG-Q-VTALTDT-TRDESPSFAPNGR-YILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred CcCceEECC-CCCEEEEEEccCCcEEEEEEECCCC-C-eEEccCC-CCccCceECCCCC-EEEEEEecCCCEEEEEEECC
Confidence 344678999 9999887765542 4999999863 3 2333322 3346789999999 555544 4444334433310
Q ss_pred CCCCCCCCCceeeeeCCCceeEEEEccC
Q 038533 292 PVAGPNGIDPMSMYSAGSEINQLQWSPA 319 (337)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 319 (337)
+.....+..+.+.+...+|+|-
T Consensus 404 ------g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 404 ------GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred ------CCceEEeecCCCCCCCCccCCC
Confidence 1223344446677888899884
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.68 E-value=8.3e-15 Score=121.43 Aligned_cols=208 Identities=15% Similarity=0.190 Sum_probs=144.6
Q ss_pred EEEEeCCeEEEEecCCCC--c--cceeeecCCCCCcccCCeeEEEeec----CCCCeEEEeeCCCcEEEEeCCCccchhh
Q 038533 93 LLASSGDFLRLWDVGDSS--I--EPVAVLNNSKSSEFCAPLTSFDWNE----IEPKRIGTCSIDTTCTIWDIEKGVVETQ 164 (337)
Q Consensus 93 ~l~~~~~~v~vw~~~~~~--~--~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 164 (337)
+..--++.+.+|+...+. . .....+++ ...+|-+|+. ..+--++.|-.-|.+.+.|....+..+.
T Consensus 138 lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~g-------t~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~skl 210 (636)
T KOG2394|consen 138 LCFNVGRELYVYSYRGAADLSKPIDKREYKG-------TSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKL 210 (636)
T ss_pred EEEecCCeEEEEEccCcchhccchhhhcccC-------CCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHh
Confidence 333444588888887431 1 11223333 2344555532 1455788888889999999876433222
Q ss_pred hh----ccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCC---ce----------eeec------------CCCCC
Q 038533 165 LI----AHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEH---ST----------IIYE------------SPQPD 213 (337)
Q Consensus 165 ~~----~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~---~~----------~~~~------------~~~~~ 213 (337)
+. -....++++.|- +...++++-.+|.+.+||....-. .. .+.. -.-..
T Consensus 211 fne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~ 290 (636)
T KOG2394|consen 211 FNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGE 290 (636)
T ss_pred hhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecc
Confidence 22 124679999999 577888999999999998642110 00 0000 00123
Q ss_pred CCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCC
Q 038533 214 TPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPV 293 (337)
Q Consensus 214 ~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~ 293 (337)
+.|...+|+| ++++||+.+.||. ++|||..+ .+++..++..-+...|++|+|||+ ++++|++|--|.||.+. .
T Consensus 291 g~in~f~FS~-DG~~LA~VSqDGf-LRvF~fdt-~eLlg~mkSYFGGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~--e- 363 (636)
T KOG2394|consen 291 GSINEFAFSP-DGKYLATVSQDGF-LRIFDFDT-QELLGVMKSYFGGLLCVCWSPDGK-YIVTGGEDDLVTVWSFE--E- 363 (636)
T ss_pred ccccceeEcC-CCceEEEEecCce-EEEeeccH-HHHHHHHHhhccceEEEEEcCCcc-EEEecCCcceEEEEEec--c-
Confidence 5788999999 9999999999999 99999987 445555555567899999999999 99999999999999998 3
Q ss_pred CCCCCCCceeeeeCCCceeEEEEcc
Q 038533 294 AGPNGIDPMSMYSAGSEINQLQWSP 318 (337)
Q Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~~~ 318 (337)
......-.+|...|..++|.|
T Consensus 364 ----rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 364 ----RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ----ceEEEeccccccceeeEeecc
Confidence 112335568999999999984
No 226
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.1e-15 Score=123.41 Aligned_cols=253 Identities=14% Similarity=0.166 Sum_probs=182.6
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecC-CCCeEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEI-EPKRIG 143 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~ 143 (337)
..|.+.|+.+.|...+. .|++|+| .|.+||....+ ..+.-..+|. ..|..-.|-|. +...++
T Consensus 139 ~~H~GcVntV~FN~~Gd---------~l~SgSDD~~vv~WdW~~~~-~~l~f~SGH~-----~NvfQaKFiP~s~d~ti~ 203 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGD---------VLASGSDDLQVVVWDWVSGS-PKLSFESGHC-----NNVFQAKFIPFSGDRTIV 203 (559)
T ss_pred cCCCCccceeeecccCc---------eeeccCccceEEeehhhccC-cccccccccc-----cchhhhhccCCCCCcCce
Confidence 68999999999999999 9999996 99999999885 2333445666 56666667764 345799
Q ss_pred EeeCCCcEEEEeCCCcc-c--hhhhhccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCC---C
Q 038533 144 TCSIDTTCTIWDIEKGV-V--ETQLIAHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDT---P 215 (337)
Q Consensus 144 ~~~~dg~i~v~d~~~~~-~--~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---~ 215 (337)
+++.||.+++=.+.... . ...+..|.++|..++.. ....|++++.|+.+.-+|++.......+.....+.. .
T Consensus 204 ~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~ 283 (559)
T KOG1334|consen 204 TSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVG 283 (559)
T ss_pred eccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcccee
Confidence 99999999987654332 2 33445799999999988 477899999999999999998865444433222333 6
Q ss_pred ceEEEeecCCCcEEEEEEecCCEEEEEECCCCCC-----CeEEeecc------cceeeEEEeCCCCCCeEEEEcCCCcEE
Q 038533 216 LLRLAWNKQDLRYMATILMDSNKVVILDIRSPTL-----PVAELERH------RACVNAIAWAPQSRRHICSVGDDSQAF 284 (337)
Q Consensus 216 i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~-----~~~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg~i~ 284 (337)
.+.++.+|.+...+++++.|.. +++||.+.... ++..+..| .-.|++++|+.++..+|++ -.|-.|+
T Consensus 284 L~~Ia~~P~nt~~faVgG~dqf-~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS-YnDe~IY 361 (559)
T KOG1334|consen 284 LYTIAVDPRNTNEFAVGGSDQF-ARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS-YNDEDIY 361 (559)
T ss_pred eeeEecCCCCccccccCChhhh-hhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee-ecccceE
Confidence 7889999988889999999998 99999986332 12333222 3478999999777634544 4577899
Q ss_pred EEeCCCCCCCCCCCCC------ceeeeeCCC--ceeEEEE-ccCCCceEEEEcCCcEEEEe
Q 038533 285 IWELPLPPVAGPNGID------PMSMYSAGS--EINQLQW-SPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 285 iw~~~~~~~~~~~~~~------~~~~~~~~~--~v~~~~~-~~~~~~l~~~~~d~~i~iw~ 336 (337)
++.-..+....|.... +...++|.. .|..+-| -|...++++++.-|.|.||+
T Consensus 362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred EeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 9966654443222111 123667754 4666665 56777888888889999997
No 227
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.1e-14 Score=123.99 Aligned_cols=232 Identities=14% Similarity=0.170 Sum_probs=147.1
Q ss_pred ceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC----C-eEEEEecCCCCccceeeecC
Q 038533 45 NRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG----D-FLRLWDVGDSSIEPVAVLNN 119 (337)
Q Consensus 45 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~----~-~v~vw~~~~~~~~~~~~~~~ 119 (337)
..|.+||.+..... .. ..+...+...+|+|+++ .|+..+ . .|.+||+.+++.+.+..+
T Consensus 184 ~~l~i~D~~g~~~~-~l-----t~~~~~v~~p~wSpDg~---------~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-- 246 (433)
T PRK04922 184 YALQVADSDGYNPQ-TI-----LRSAEPILSPAWSPDGK---------KLAYVSFERGRSAIYVQDLATGQRELVASF-- 246 (433)
T ss_pred EEEEEECCCCCCce-Ee-----ecCCCccccccCCCCCC---------EEEEEecCCCCcEEEEEECCCCCEEEeccC--
Confidence 45667665433222 11 45677899999999998 666654 2 799999988743332222
Q ss_pred CCCCcccCCeeEEEeecCCCCeEE-EeeCCC--cEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcC-CCe--E
Q 038533 120 SKSSEFCAPLTSFDWNEIEPKRIG-TCSIDT--TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSA-DGS--V 192 (337)
Q Consensus 120 ~~~~~~~~~i~~~~~~~~~~~~l~-~~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~--i 192 (337)
. ....+.+|+| +++.++ +.+.+| .|++||+.+++. ..+..+.......+|+ +++.++.++. +|. |
T Consensus 247 -~-----g~~~~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~i 318 (433)
T PRK04922 247 -R-----GINGAPSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQI 318 (433)
T ss_pred -C-----CCccCceECC-CCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 2 3345789999 887665 445555 599999988764 3444455555778999 7887776653 444 6
Q ss_pred EEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC--EEEEEECCCCCCCeEEeecccceeeEEEeCCCC
Q 038533 193 RIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN--KVVILDIRSPTLPVAELERHRACVNAIAWAPQS 270 (337)
Q Consensus 193 ~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 270 (337)
.++|+.+++....... .......+|+| ++++++..+.++. .|.+||+.+ +.. ..+. +........|+|+|
T Consensus 319 y~~dl~~g~~~~lt~~----g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~-g~~-~~Lt-~~~~~~~p~~spdG 390 (433)
T PRK04922 319 YRVAASGGSAERLTFQ----GNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLST-GSV-RTLT-PGSLDESPSFAPNG 390 (433)
T ss_pred EEEECCCCCeEEeecC----CCCccCEEECC-CCCEEEEEECCCCceeEEEEECCC-CCe-EECC-CCCCCCCceECCCC
Confidence 6667766653332221 23345689999 9998887654432 499999876 332 3333 22344567999999
Q ss_pred CCeEEEEcC-CC--cEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEcc
Q 038533 271 RRHICSVGD-DS--QAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSP 318 (337)
Q Consensus 271 ~~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 318 (337)
+ +++..+. .+ .|.++++. . .....+..+.+.+...+|+|
T Consensus 391 ~-~i~~~s~~~g~~~L~~~~~~--g------~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 391 S-MVLYATREGGRGVLAAVSTD--G------RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred C-EEEEEEecCCceEEEEEECC--C------CceEEcccCCCCCCCCccCC
Confidence 9 5555443 33 46666665 2 22334444556678888887
No 228
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.66 E-value=2.1e-14 Score=110.54 Aligned_cols=246 Identities=14% Similarity=0.139 Sum_probs=168.2
Q ss_pred CCceeEEEEe-----cc-eEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCC-CCeEEEecCCCCcccCcCCccE
Q 038533 21 PYPLYAMAVC-----GQ-RIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPY-PPTKLMFDPNSSSRKSSSNRHL 93 (337)
Q Consensus 21 ~~~v~~~~~s-----~~-~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~-~i~~i~~~~~~~~~~~~~~~~~ 93 (337)
...+..+.|. +. .|+-+.. +|.|.+|..+...........-...-.. ...++.|++.+. -
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a----~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~---------~ 135 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHA----RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT---------K 135 (339)
T ss_pred ccccceeeeeeccCCccceeeeccc----cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc---------e
Confidence 4557788888 44 4555665 8999998877654433321111011111 245788998888 4
Q ss_pred EEEe-CC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCC-ccchh-hhhccC
Q 038533 94 LASS-GD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEK-GVVET-QLIAHD 169 (337)
Q Consensus 94 l~~~-~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~~-~~~~~~ 169 (337)
++++ ++ .+.+-+.....++..+..+.|. -++.-..|+..+++++.+|+.|+.+..||++. ++.+. ..+.|.
T Consensus 136 i~vs~s~G~~~~v~~t~~~le~vq~wk~He-----~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~ 210 (339)
T KOG0280|consen 136 IFVSDSRGSISGVYETEMVLEKVQTWKVHE-----FEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT 210 (339)
T ss_pred EEEEcCCCcEEEEecceeeeeecccccccc-----eeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeee
Confidence 5444 44 6666666666556666888888 88889999887889999999999999999983 33332 245688
Q ss_pred CceeEEEeC-C-CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCC
Q 038533 170 KEVYDICWG-E-ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP 247 (337)
Q Consensus 170 ~~v~~~~~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~ 247 (337)
..|.++.-+ + +.++++|+.|-.|++||.|+...+.... ...+.|+.+.++|.....++.++.-++ .+|.+....
T Consensus 211 ~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~---~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~ 286 (339)
T KOG0280|consen 211 SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA---KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDK 286 (339)
T ss_pred cceEEEecCCCCCceEEEeccccceeeeehhcccCccccC---ccccceEEEEecchhhhHHHHHHHhcC-ceEEEeccc
Confidence 889999988 3 7899999999999999999765433322 234899999999966655555565556 888887764
Q ss_pred CCC----eEEeecccceeeEEEeCCCCCCeEEEEc-CCCcEE-EEeCC
Q 038533 248 TLP----VAELERHRACVNAIAWAPQSRRHICSVG-DDSQAF-IWELP 289 (337)
Q Consensus 248 ~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~-iw~~~ 289 (337)
... ......|.+-...-.|..... +|+|++ .|+.++ +|-.-
T Consensus 287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~-~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 287 VLEFQIVLPSDKIHDSLCYGGDWDSKDS-FLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred ccchheeeeccccccceeeccccccccc-eeeeeeccccceeeeeeec
Confidence 322 233456666666677755544 788876 566654 66443
No 229
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.66 E-value=7.2e-16 Score=120.33 Aligned_cols=221 Identities=14% Similarity=0.282 Sum_probs=157.2
Q ss_pred EEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEE
Q 038533 75 KLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTI 153 (337)
Q Consensus 75 ~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 153 (337)
-++|+|+++ ++|++++ .+.|-|..+-+. .+.+..- ..|..+.|.......+.....++.|.+
T Consensus 13 ~c~fSp~g~---------yiAs~~~yrlviRd~~tlq~--~qlf~cl------dki~yieW~ads~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 13 FCSFSPCGN---------YIASLSRYRLVIRDSETLQL--HQLFLCL------DKIVYIEWKADSCHILCVAYKDPKVQV 75 (447)
T ss_pred ceeECCCCC---------eeeeeeeeEEEEeccchhhH--HHHHHHH------HHhhheeeeccceeeeeeeeccceEEE
Confidence 467999999 9999999 888989888743 3222221 568889998733445666678999999
Q ss_pred EeCCCccchhhhhccCCceeEEEeC-CC-cEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEE
Q 038533 154 WDIEKGVVETQLIAHDKEVYDICWG-EA-RVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMAT 231 (337)
Q Consensus 154 ~d~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 231 (337)
|++...+--..+......+.+++|+ ++ .+|.+...+-.|.+|.+.+.+...... .+..+..++|+| ++++.+.
T Consensus 76 wsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~----pK~~~kg~~f~~-dg~f~ai 150 (447)
T KOG4497|consen 76 WSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH----PKTNVKGYAFHP-DGQFCAI 150 (447)
T ss_pred EEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc----cccCceeEEECC-CCceeee
Confidence 9998888777888888899999999 66 456677789999999999887433322 235668899999 9999988
Q ss_pred EEecCCEEEEEECCC--CCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCC
Q 038533 232 ILMDSNKVVILDIRS--PTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGS 309 (337)
Q Consensus 232 ~~~d~~~i~i~d~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 309 (337)
.+.... ...+.+.. .-..++.+....-..+.+.|+|+|. .|+ +||-.. +.....+...-
T Consensus 151 ~sRrDC-kdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~-~la---------Vwd~~L--------eykv~aYe~~l 211 (447)
T KOG4497|consen 151 LSRRDC-KDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGN-WLA---------VWDNVL--------EYKVYAYERGL 211 (447)
T ss_pred eecccH-HHHHHHHhhHHHHHHHhcCCCcccccCceECCCCc-EEE---------Eecchh--------hheeeeeeecc
Confidence 776543 22222221 0123344444455678899999998 554 555440 00111222335
Q ss_pred ceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 310 EINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 310 ~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
.+..++|+|.+++|+.|+.|+.+||.+
T Consensus 212 G~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 212 GLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred ceeEEEeccccceEEeeccchhhhhhc
Confidence 689999999998899999999998754
No 230
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=3.5e-13 Score=117.58 Aligned_cols=216 Identities=13% Similarity=0.153 Sum_probs=140.6
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC----C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCe
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG----D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKR 141 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~----~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 141 (337)
..+...+...+|+||++ .|+..+ + .|.+||+.+++.+ .+..+. ..+...+|+| +++.
T Consensus 198 t~~~~~v~~p~wSpDG~---------~lay~s~~~g~~~i~~~dl~~g~~~---~l~~~~-----g~~~~~~~SP-DG~~ 259 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQ---------EITYMSYANGRPRVYLLDLETGQRE---LVGNFP-----GMTFAPRFSP-DGRK 259 (435)
T ss_pred ecCCCCeEeeEECCCCC---------EEEEEEecCCCCEEEEEECCCCcEE---EeecCC-----CcccCcEECC-CCCE
Confidence 46778899999999998 666543 3 8999999888432 333333 5677889999 8887
Q ss_pred EE-EeeCCCc--EEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcC-CC--eEEEEECCCCCCceeeecCCCCCC
Q 038533 142 IG-TCSIDTT--CTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSA-DG--SVRIFDLRDKEHSTIIYESPQPDT 214 (337)
Q Consensus 142 l~-~~~~dg~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~ 214 (337)
|+ +.+.++. |.+||+.+++. ..+..+........|+ +++.++..+. +| .|.++|+..++...... ...
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~----~~~ 334 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF----GGG 334 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec----CCC
Confidence 65 5555555 77779887764 3455555666788999 7888877664 33 68888887665433222 134
Q ss_pred CceEEEeecCCCcEEEEEEecC--CEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEE-EcCCC-----cEEEE
Q 038533 215 PLLRLAWNKQDLRYMATILMDS--NKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICS-VGDDS-----QAFIW 286 (337)
Q Consensus 215 ~i~~~~~~~~~~~~l~~~~~d~--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~~dg-----~i~iw 286 (337)
.+....|+| +++.|+....++ ..|.+||+.. +. ...+. ....+....|+|+|+ .|+. ....+ .+.++
T Consensus 335 ~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~-~~-~~~lt-~~~~~~~p~~spDG~-~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 335 RYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDG-SG-ERILT-SGFLVEGPTWAPNGR-VIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred cccCeEECC-CCCEEEEEEcCCCceEEEEEECCC-Cc-eEecc-CCCCCCCCeECCCCC-EEEEEEccCCCCCcceEEEE
Confidence 556788999 899888776543 2488888754 22 33333 223567889999999 5544 43332 46667
Q ss_pred eCCCCCCCCCCCCCceeeeeCCCceeEEEEccC
Q 038533 287 ELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPA 319 (337)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 319 (337)
++. . .....+. ....+...+|+|-
T Consensus 410 dl~--g------~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 410 DLT--G------RNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred ECC--C------CceEEcc-CCCCccCcccCCC
Confidence 766 2 1122222 2344677788874
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.63 E-value=7.3e-14 Score=107.22 Aligned_cols=148 Identities=18% Similarity=0.386 Sum_probs=99.7
Q ss_pred eEEEeC-CCcEEEEEcC----------CCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEE--ecCCEE
Q 038533 173 YDICWG-EARVFASVSA----------DGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATIL--MDSNKV 239 (337)
Q Consensus 173 ~~~~~~-~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d~~~i 239 (337)
..+.|+ .|+.|+.-.. -+...+|.++........... ...++|.+++|+| +++.|++.. .+.. |
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP-~g~~favi~g~~~~~-v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSP-NGNEFAVIYGSMPAK-V 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECc-CCCEEEEEEccCCcc-c
Confidence 356677 5655553322 234666666544433333322 1345799999999 888766543 4455 9
Q ss_pred EEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcC---CCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEE
Q 038533 240 VILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGD---DSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQW 316 (337)
Q Consensus 240 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 316 (337)
.+||++ ..++..+. ...++.+.|+|+|+ +|++++. .|.|.+||++ +.. ......| ..+..++|
T Consensus 86 ~lyd~~--~~~i~~~~--~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~~--~~~------~i~~~~~-~~~t~~~W 151 (194)
T PF08662_consen 86 TLYDVK--GKKIFSFG--TQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDVR--KKK------KISTFEH-SDATDVEW 151 (194)
T ss_pred EEEcCc--ccEeEeec--CCCceEEEECCCCC-EEEEEEccCCCcEEEEEECC--CCE------Eeecccc-CcEEEEEE
Confidence 999997 44555554 46778999999999 8887764 4679999999 311 2233333 34789999
Q ss_pred ccCCCceEEEEc------CCcEEEEeC
Q 038533 317 SPAQPDWLAIAF------SNKMQLLKV 337 (337)
Q Consensus 317 ~~~~~~l~~~~~------d~~i~iw~l 337 (337)
+|+|++++++.. |+.++||+.
T Consensus 152 sPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 152 SPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred cCCCCEEEEEEeccceeccccEEEEEe
Confidence 999999998753 789999974
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.63 E-value=4.3e-12 Score=107.15 Aligned_cols=282 Identities=13% Similarity=0.182 Sum_probs=175.7
Q ss_pred EEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe-C---C--eEEEEecC
Q 038533 34 IAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS-G---D--FLRLWDVG 107 (337)
Q Consensus 34 la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~-~---~--~v~vw~~~ 107 (337)
+++|+...+..+.|.+|+++..++.+..... ..-......++++|+++ +|.+. . + .|..|++.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~--~~~~~~Ps~l~~~~~~~---------~LY~~~e~~~~~g~v~~~~i~ 70 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQT--VAEGENPSWLAVSPDGR---------RLYVVNEGSGDSGGVSSYRID 70 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEE--EEESSSECCEEE-TTSS---------EEEEEETTSSTTTEEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeee--ecCCCCCceEEEEeCCC---------EEEEEEccccCCCCEEEEEEC
Confidence 5566652233489999999888877665222 22344557789999998 55543 3 2 88888887
Q ss_pred CC--CccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee-CCCcEEEEeCCC-ccchhh---hh----------ccCC
Q 038533 108 DS--SIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS-IDTTCTIWDIEK-GVVETQ---LI----------AHDK 170 (337)
Q Consensus 108 ~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~-~~~~~~---~~----------~~~~ 170 (337)
.. ++..+....... .....++++| ++++++++. .+|.|.++++.. +..... +. ....
T Consensus 71 ~~~g~L~~~~~~~~~g-----~~p~~i~~~~-~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~ 144 (345)
T PF10282_consen 71 PDTGTLTLLNSVPSGG-----SSPCHIAVDP-DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGP 144 (345)
T ss_dssp TTTTEEEEEEEEEESS-----SCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSST
T ss_pred CCcceeEEeeeeccCC-----CCcEEEEEec-CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccc
Confidence 64 444444444221 4556799998 888887776 589999999976 332111 10 1224
Q ss_pred ceeEEEeC-CCcEEEEEc-CCCeEEEEECCCCCC-cee--eecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECC
Q 038533 171 EVYDICWG-EARVFASVS-ADGSVRIFDLRDKEH-STI--IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR 245 (337)
Q Consensus 171 ~v~~~~~~-~~~~l~~~~-~dg~i~iwd~~~~~~-~~~--~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~ 245 (337)
...++.++ +++++++.. ....|.+|++..... ... .... .....-..+.|+| +++++++..+....|.++++.
T Consensus 145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV-PPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC-STTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc-ccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeec
Confidence 46788999 677666653 355799999987652 111 1111 2345678999999 999998888877779999998
Q ss_pred CCCCCe---EEeecc------cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEE
Q 038533 246 SPTLPV---AELERH------RACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQW 316 (337)
Q Consensus 246 ~~~~~~---~~~~~~------~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 316 (337)
.....+ ..+... ......++++|+|+.+.++...++.|.+|+++..+ .. . ...............+++
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~-g~-l-~~~~~~~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPAT-GT-L-TLVQTVPTGGKFPRHFAF 299 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT-TT-E-EEEEEEEESSSSEEEEEE
T ss_pred ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCC-Cc-e-EEEEEEeCCCCCccEEEE
Confidence 322112 222111 12567899999999444555567899999995211 10 0 001122223445899999
Q ss_pred ccCCCceEEEE-cCCcEEEEeC
Q 038533 317 SPAQPDWLAIA-FSNKMQLLKV 337 (337)
Q Consensus 317 ~~~~~~l~~~~-~d~~i~iw~l 337 (337)
+|+|++|+++. .++.|.+|++
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE
T ss_pred eCCCCEEEEEecCCCeEEEEEE
Confidence 99999999887 5678998864
No 233
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=2.8e-11 Score=96.47 Aligned_cols=280 Identities=11% Similarity=0.188 Sum_probs=186.4
Q ss_pred eEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC----C-eEEEEecC
Q 038533 33 RIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG----D-FLRLWDVG 107 (337)
Q Consensus 33 ~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~----~-~v~vw~~~ 107 (337)
.+.+|+...+++..|.+|+++...+.+.. .......+.++-|+|+|+.+ .|.++. + .|.-|.++
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l~~--~~~v~~~~nptyl~~~~~~~---------~LY~v~~~~~~ggvaay~iD 72 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGELSL--LQLVAELGNPTYLAVNPDQR---------HLYVVNEPGEEGGVAAYRID 72 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCcccccch--hhhccccCCCceEEECCCCC---------EEEEEEecCCcCcEEEEEEc
Confidence 45566665556889999999977776654 22357778899999999998 666653 2 67777776
Q ss_pred C--CCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee-CCCcEEEEeCCC-ccchhh--hhccCCc----------
Q 038533 108 D--SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS-IDTTCTIWDIEK-GVVETQ--LIAHDKE---------- 171 (337)
Q Consensus 108 ~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~-~~~~~~--~~~~~~~---------- 171 (337)
. +++..+....... .+-+.+++++ ++++++++. ..|.|.++-++. |..... ...|.+.
T Consensus 73 ~~~G~Lt~ln~~~~~g-----~~p~yvsvd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h 146 (346)
T COG2706 73 PDDGRLTFLNRQTLPG-----SPPCYVSVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPH 146 (346)
T ss_pred CCCCeEEEeeccccCC-----CCCeEEEECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCc
Confidence 4 5443333222222 4447899998 888888876 457899998865 432221 1224433
Q ss_pred eeEEEeC-CCcEEEEEcC-CCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCC
Q 038533 172 VYDICWG-EARVFASVSA-DGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTL 249 (337)
Q Consensus 172 v~~~~~~-~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~ 249 (337)
+....+. +++++++.+. .-.|.+|++..++..............-+.+.|+| ++++..+.++=.++|.+|.......
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g 225 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVG 225 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCc
Confidence 6777788 5767777653 34689999997654332222213346678999999 9999988887666699999887533
Q ss_pred CeEEeecc---------cceeeEEEeCCCCCCeEEEEc-CCCcEEEEeCCCCCCCCCCCCCce--eeeeCCCceeEEEEc
Q 038533 250 PVAELERH---------RACVNAIAWAPQSRRHICSVG-DDSQAFIWELPLPPVAGPNGIDPM--SMYSAGSEINQLQWS 317 (337)
Q Consensus 250 ~~~~~~~~---------~~~v~~~~~~~~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~ 317 (337)
.+..++.+ ......|..+|+|+ +|.++. ....|.+|.+. .... ...+ ....+....+++.++
T Consensus 226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr-FLYasNRg~dsI~~f~V~--~~~g---~L~~~~~~~teg~~PR~F~i~ 299 (346)
T COG2706 226 KFEELQTIDTLPEDFTGTNWAAAIHISPDGR-FLYASNRGHDSIAVFSVD--PDGG---KLELVGITPTEGQFPRDFNIN 299 (346)
T ss_pred eEEEeeeeccCccccCCCCceeEEEECCCCC-EEEEecCCCCeEEEEEEc--CCCC---EEEEEEEeccCCcCCccceeC
Confidence 34443322 23567899999999 777665 34589999998 3221 1111 111234447999999
Q ss_pred cCCCceEEEEcC-CcEEEEe
Q 038533 318 PAQPDWLAIAFS-NKMQLLK 336 (337)
Q Consensus 318 ~~~~~l~~~~~d-~~i~iw~ 336 (337)
|++++|+++..+ ..|.+|.
T Consensus 300 ~~g~~Liaa~q~sd~i~vf~ 319 (346)
T COG2706 300 PSGRFLIAANQKSDNITVFE 319 (346)
T ss_pred CCCCEEEEEccCCCcEEEEE
Confidence 999999988854 5677775
No 234
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.4e-13 Score=115.20 Aligned_cols=237 Identities=16% Similarity=0.193 Sum_probs=162.6
Q ss_pred CCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEE
Q 038533 66 SFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIG 143 (337)
Q Consensus 66 ~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 143 (337)
.++++...+.|..+|||. +++|+|- . .|++||+..-.++.-+.+.. ..|.-.-.+. +-..++
T Consensus 47 dfe~p~ast~ik~s~DGq--------Y~lAtG~YKP~ikvydlanLSLKFERhlDa-------e~V~feiLsD-D~SK~v 110 (703)
T KOG2321|consen 47 DFEMPTASTRIKVSPDGQ--------YLLATGTYKPQIKVYDLANLSLKFERHLDA-------EVVDFEILSD-DYSKSV 110 (703)
T ss_pred hcCCccccceeEecCCCc--------EEEEecccCCceEEEEcccceeeeeecccc-------cceeEEEecc-chhhhe
Confidence 468889999999999999 5667776 4 99999999875444443332 2333333333 555555
Q ss_pred EeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEee
Q 038533 144 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWN 222 (337)
Q Consensus 144 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~ 222 (337)
.--.|.+|.+...-....... -...-.+++++ +..-|+.++....|+-+++..++....+.. ..+.++++..+
T Consensus 111 ~L~~DR~IefHak~G~hy~~R---IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~---~~~~lN~v~in 184 (703)
T KOG2321|consen 111 FLQNDRTIEFHAKYGRHYRTR---IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET---DSGELNVVSIN 184 (703)
T ss_pred EeecCceeeehhhcCeeeeee---cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc---ccccceeeeec
Confidence 556677777654321111111 12234567777 544455555566788889999885554432 34789999999
Q ss_pred cCCCcEEEEEEecCCEEEEEECCCCCCCeEEee------cccc-----eeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCC
Q 038533 223 KQDLRYMATILMDSNKVVILDIRSPTLPVAELE------RHRA-----CVNAIAWAPQSRRHICSVGDDSQAFIWELPLP 291 (337)
Q Consensus 223 ~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~------~~~~-----~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 291 (337)
+ ...+|++|+.+|. |.+||.|. ...+..+. .|.+ .|+++.|+.+|- -+++|+.+|.+.|||++..
T Consensus 185 ~-~hgLla~Gt~~g~-VEfwDpR~-ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 185 E-EHGLLACGTEDGV-VEFWDPRD-KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred C-ccceEEecccCce-EEEecchh-hhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccC
Confidence 8 8889999999998 99999998 43344432 2333 499999999987 8999999999999999933
Q ss_pred CCCCCCCCCceeeeeCC--CceeEEEEccCCCc-eEEEEcCCcEEEEe
Q 038533 292 PVAGPNGIDPMSMYSAG--SEINQLQWSPAQPD-WLAIAFSNKMQLLK 336 (337)
Q Consensus 292 ~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~-l~~~~~d~~i~iw~ 336 (337)
.|+....|. .+|..+.|.+.+.. -+.+.....++||+
T Consensus 261 --------~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd 300 (703)
T KOG2321|consen 261 --------KPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWD 300 (703)
T ss_pred --------CceeecccCCccceeeecccccCCCceEEecchHHhhhcc
Confidence 367666664 57999999886332 33444456788886
No 235
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=1.5e-14 Score=124.36 Aligned_cols=300 Identities=13% Similarity=0.180 Sum_probs=209.3
Q ss_pred eeeeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCcc
Q 038533 15 SVTHESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRH 92 (337)
Q Consensus 15 ~~~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~ 92 (337)
-..+...+++.++..+ |+-+|.++ .-.+.+.+++....+.... ..-....|-.+.|+|... .+.
T Consensus 18 slsl~v~~~~~a~si~p~grdi~lAs-----r~gl~i~dld~p~~ppr~l---~h~tpw~vad~qws~h~a------~~~ 83 (1081)
T KOG0309|consen 18 SLSLKVDGGFNAVSINPSGRDIVLAS-----RQGLYIIDLDDPFTPPRWL---HHITPWQVADVQWSPHPA------KPY 83 (1081)
T ss_pred eeEEEecCcccceeeccccchhhhhh-----hcCeEEEeccCCCCCceee---eccCcchhcceecccCCC------Cce
Confidence 3456677889999998 88899988 4445666777665554431 122345678889998764 335
Q ss_pred EEEEeCC-eEEEEecCCCCc-cceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc-chhhhhccC
Q 038533 93 LLASSGD-FLRLWDVGDSSI-EPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV-VETQLIAHD 169 (337)
Q Consensus 93 ~l~~~~~-~v~vw~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~ 169 (337)
.+++-+. .-.+|++....- .....+.+|. ..|+.+.|+|.....+++++-|-.+..||+++.. ++.....-.
T Consensus 84 wiVsts~qkaiiwnlA~ss~~aIef~lhghs-----raitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~ 158 (1081)
T KOG0309|consen 84 WIVSTSNQKAIIWNLAKSSSNAIEFVLHGHS-----RAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWR 158 (1081)
T ss_pred eEEecCcchhhhhhhhcCCccceEEEEecCc-----cceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccc
Confidence 6777776 778999876532 3345667887 9999999999889999999999999999998765 344444344
Q ss_pred CceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCC
Q 038533 170 KEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP 247 (337)
Q Consensus 170 ~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~ 247 (337)
.....++|+ +++.++ .+....|.+||++.+..+...... |...++.++|+......+.+.+.|+. |++||..+.
T Consensus 159 s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~--~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kS 234 (1081)
T KOG0309|consen 159 SAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKG--HVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKS 234 (1081)
T ss_pred ccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecc--cceeeehHHHhhhhhhhhcccCCCCc-eeeeccccc
Confidence 556789999 455444 455678999999998766555544 67788899998766678889999998 999999875
Q ss_pred CCCeEEeecccceeeEEEeCCCCCCeEEEEcC-CCcEEEEeCCCCCCCC--C-CCCCceeeeeCCCceeEEEEccCCC--
Q 038533 248 TLPVAELERHRACVNAIAWAPQSRRHICSVGD-DSQAFIWELPLPPVAG--P-NGIDPMSMYSAGSEINQLQWSPAQP-- 321 (337)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~iw~~~~~~~~~--~-~~~~~~~~~~~~~~v~~~~~~~~~~-- 321 (337)
.+.-........+|..-++.|-|+.+.+.-.. +..+.+++.+...... . .......+.+|.+.|..+.|-..+.
T Consensus 235 t~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~ 314 (1081)
T KOG0309|consen 235 TTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD 314 (1081)
T ss_pred ccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc
Confidence 44333333456788888888877644333222 2244444444211110 0 0122447889999999998876443
Q ss_pred --------ceEEEEcCCcEEEEeC
Q 038533 322 --------DWLAIAFSNKMQLLKV 337 (337)
Q Consensus 322 --------~l~~~~~d~~i~iw~l 337 (337)
.|++-+.|..+++|.|
T Consensus 315 ~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 315 GDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred CCCCccceeEEEeecCCceEeeec
Confidence 4889999999999975
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=6.3e-13 Score=115.39 Aligned_cols=210 Identities=12% Similarity=0.144 Sum_probs=134.1
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee---CCCcEEEEeCCCccchhhhhccCCceeEEE
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS---IDTTCTIWDIEKGVVETQLIAHDKEVYDIC 176 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~ 176 (337)
.|.++|..... . +.+..+. ..+...+|+| +++.|+..+ .+..|.+||+.+++... +....+.+..++
T Consensus 180 ~l~~~d~dg~~--~-~~lt~~~-----~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~ 249 (429)
T PRK03629 180 ELRVSDYDGYN--Q-FVVHRSP-----QPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPA 249 (429)
T ss_pred eEEEEcCCCCC--C-EEeecCC-----CceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeE
Confidence 78888888763 2 2233333 6789999999 998888654 24579999998875322 222233355689
Q ss_pred eC-CCcEEEEE-cCCC--eEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecC-C-EEEEEECCCCCCC
Q 038533 177 WG-EARVFASV-SADG--SVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDS-N-KVVILDIRSPTLP 250 (337)
Q Consensus 177 ~~-~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~-~i~i~d~~~~~~~ 250 (337)
|+ +++.|+.. +.+| .|.+||+.+++.... .. ....+....|+| +++.|+..+.++ . .|+++|+.. + .
T Consensus 250 ~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~---~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~-g-~ 322 (429)
T PRK03629 250 FSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TD---GRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNING-G-A 322 (429)
T ss_pred ECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cC---CCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCC-C-C
Confidence 99 78777754 4444 588999988764322 21 234677899999 899887776553 2 255556654 2 2
Q ss_pred eEEeecccceeeEEEeCCCCCCeEEEEc-CCC--cEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEE
Q 038533 251 VAELERHRACVNAIAWAPQSRRHICSVG-DDS--QAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIA 327 (337)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 327 (337)
...+..+........|+|+|+ .|+..+ .++ .|.+||+..+. ...+.. ........|+|||+.++.++
T Consensus 323 ~~~lt~~~~~~~~~~~SpDG~-~Ia~~~~~~g~~~I~~~dl~~g~--------~~~Lt~-~~~~~~p~~SpDG~~i~~~s 392 (429)
T PRK03629 323 PQRITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGG--------VQVLTD-TFLDETPSIAPNGTMVIYSS 392 (429)
T ss_pred eEEeecCCCCccCEEECCCCC-EEEEEEccCCCceEEEEECCCCC--------eEEeCC-CCCCCCceECCCCCEEEEEE
Confidence 344444444566789999999 665544 333 57788887222 222221 12234678999999998888
Q ss_pred cCCc---EEEEe
Q 038533 328 FSNK---MQLLK 336 (337)
Q Consensus 328 ~d~~---i~iw~ 336 (337)
.++. +.+++
T Consensus 393 ~~~~~~~l~~~~ 404 (429)
T PRK03629 393 SQGMGSVLNLVS 404 (429)
T ss_pred cCCCceEEEEEE
Confidence 7654 44444
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=7.4e-13 Score=115.43 Aligned_cols=210 Identities=14% Similarity=0.174 Sum_probs=133.8
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCC---CcEEEEeCCCccchhhhhccCCceeEEE
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSID---TTCTIWDIEKGVVETQLIAHDKEVYDIC 176 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~ 176 (337)
.|.+||..... .+.+..+. ..+.+.+|+| +++.|+..+.+ ..|.+||+.+++... +....+...+.+
T Consensus 185 ~l~i~D~~g~~---~~~lt~~~-----~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~ 254 (433)
T PRK04922 185 ALQVADSDGYN---PQTILRSA-----EPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPS 254 (433)
T ss_pred EEEEECCCCCC---ceEeecCC-----CccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCce
Confidence 68899986652 23344444 6788999999 99988887643 469999998776432 223344456789
Q ss_pred eC-CCcEEE-EEcCCC--eEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecC-C-EEEEEECCCCCCC
Q 038533 177 WG-EARVFA-SVSADG--SVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDS-N-KVVILDIRSPTLP 250 (337)
Q Consensus 177 ~~-~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-~-~i~i~d~~~~~~~ 250 (337)
|+ +++.++ +.+.+| .|.+||+.+++... +. .+.......+|+| +++.|+..+... . .|+++|+.. +.
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt---~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~-g~- 327 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LT---NHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASG-GS- 327 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Cc---cCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCC-CC-
Confidence 99 677665 445555 59999998876332 22 1233456789999 898888776433 2 366777765 32
Q ss_pred eEEeecccceeeEEEeCCCCCCeEEEEcCC-C--cEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEE
Q 038533 251 VAELERHRACVNAIAWAPQSRRHICSVGDD-S--QAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIA 327 (337)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 327 (337)
...+..+.......+|+|+|+ .|+..+.+ + .|.+||+..+. ...+. +........|+|+|+.++..+
T Consensus 328 ~~~lt~~g~~~~~~~~SpDG~-~Ia~~~~~~~~~~I~v~d~~~g~--------~~~Lt-~~~~~~~p~~spdG~~i~~~s 397 (433)
T PRK04922 328 AERLTFQGNYNARASVSPDGK-KIAMVHGSGGQYRIAVMDLSTGS--------VRTLT-PGSLDESPSFAPNGSMVLYAT 397 (433)
T ss_pred eEEeecCCCCccCEEECCCCC-EEEEEECCCCceeEEEEECCCCC--------eEECC-CCCCCCCceECCCCCEEEEEE
Confidence 333333334455789999999 66655433 3 58899987222 22222 223445679999999877666
Q ss_pred cC-C--cEEEEe
Q 038533 328 FS-N--KMQLLK 336 (337)
Q Consensus 328 ~d-~--~i~iw~ 336 (337)
.+ + .|.+++
T Consensus 398 ~~~g~~~L~~~~ 409 (433)
T PRK04922 398 REGGRGVLAAVS 409 (433)
T ss_pred ecCCceEEEEEE
Confidence 43 3 344443
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.3e-12 Score=114.13 Aligned_cols=202 Identities=12% Similarity=0.147 Sum_probs=134.2
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC---CCcEEEEeCCCccchhhhhccCCceeEEE
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI---DTTCTIWDIEKGVVETQLIAHDKEVYDIC 176 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~v~~~~ 176 (337)
.|.++|.... ..+.+..+. ..+.+.+|+| +++.|+..+. +..|.+||+.+++.. .+..+.+.+...+
T Consensus 183 ~l~~~d~dg~---~~~~lt~~~-----~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~ 252 (435)
T PRK05137 183 RLAIMDQDGA---NVRYLTDGS-----SLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPR 252 (435)
T ss_pred EEEEECCCCC---CcEEEecCC-----CCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcE
Confidence 7888888665 334455555 7899999999 9998887753 468999999887643 3444566778899
Q ss_pred eC-CCcEEE-EEcCCCe--EEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecC--CEEEEEECCCCCCC
Q 038533 177 WG-EARVFA-SVSADGS--VRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDS--NKVVILDIRSPTLP 250 (337)
Q Consensus 177 ~~-~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~~i~i~d~~~~~~~ 250 (337)
|+ +++.|+ +.+.++. |.+||+.+++.... . .+........|+| +++.|+..+... ..|+++|+.. +.
T Consensus 253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~L-t---~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g-~~- 325 (435)
T PRK05137 253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRL-T---DSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADG-SN- 325 (435)
T ss_pred ECCCCCEEEEEEecCCCceEEEEECCCCceEEc-c---CCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCC-CC-
Confidence 99 677665 5555555 77779887764322 2 1334566789999 888888766432 2488888765 32
Q ss_pred eEEeecccceeeEEEeCCCCCCeEEEEcCC---CcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEE
Q 038533 251 VAELERHRACVNAIAWAPQSRRHICSVGDD---SQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIA 327 (337)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 327 (337)
...+..+...+....|+|+|+ .|+..+.+ ..|.+|++. ... ...+ .....+....|+|||+.++..+
T Consensus 326 ~~~lt~~~~~~~~~~~SpdG~-~ia~~~~~~~~~~i~~~d~~--~~~------~~~l-t~~~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 326 PRRISFGGGRYSTPVWSPRGD-LIAFTKQGGGQFSIGVMKPD--GSG------ERIL-TSGFLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred eEEeecCCCcccCeEECCCCC-EEEEEEcCCCceEEEEEECC--CCc------eEec-cCCCCCCCCeECCCCCEEEEEE
Confidence 344443445567789999999 66655433 357777875 211 1111 1223467889999999887655
Q ss_pred c
Q 038533 328 F 328 (337)
Q Consensus 328 ~ 328 (337)
.
T Consensus 396 ~ 396 (435)
T PRK05137 396 Q 396 (435)
T ss_pred c
Confidence 4
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=1.1e-12 Score=113.87 Aligned_cols=205 Identities=11% Similarity=0.157 Sum_probs=127.2
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCC---CcEEEEeCCCccchhhhhccCCceeEEE
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSID---TTCTIWDIEKGVVETQLIAHDKEVYDIC 176 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~ 176 (337)
.|.++|.... ....+..+. ..+.+.+|+| +++.|+..+.+ ..|.+||+.+++... +....+.+...+
T Consensus 177 ~L~~~D~dG~---~~~~l~~~~-----~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~ 246 (427)
T PRK02889 177 QLQISDADGQ---NAQSALSSP-----EPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPA 246 (427)
T ss_pred EEEEECCCCC---CceEeccCC-----CCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceE
Confidence 6777777544 223344444 6788999999 99888877643 359999998886432 232344567889
Q ss_pred eC-CCcEEE-EEcCCCeEEEEEC--CCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeE
Q 038533 177 WG-EARVFA-SVSADGSVRIFDL--RDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVA 252 (337)
Q Consensus 177 ~~-~~~~l~-~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 252 (337)
|+ +++.++ +.+.+|...+|.+ ..+. ...+.. +........|+| +++.|+..+..+....+|.+........
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~---~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~ 321 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ---SSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQ 321 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC---CCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceE
Confidence 99 677766 5677887666654 4443 222221 234456788999 8988877665432255555432222233
Q ss_pred EeecccceeeEEEeCCCCCCeEEEEcCCC---cEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcC
Q 038533 253 ELERHRACVNAIAWAPQSRRHICSVGDDS---QAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFS 329 (337)
Q Consensus 253 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 329 (337)
.+..+........|+|+|+ +|+..+.++ .|.+||+..+. ...+. .........|+|+|+.|+.++.+
T Consensus 322 ~lt~~g~~~~~~~~SpDG~-~Ia~~s~~~g~~~I~v~d~~~g~--------~~~lt-~~~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 322 RVTFTGSYNTSPRISPDGK-LLAYISRVGGAFKLYVQDLATGQ--------VTALT-DTTRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred EEecCCCCcCceEECCCCC-EEEEEEccCCcEEEEEEECCCCC--------eEEcc-CCCCccCceECCCCCEEEEEEec
Confidence 3322223345678999999 776655443 59999988322 12222 12234678999999988877644
No 240
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.58 E-value=9.1e-13 Score=103.80 Aligned_cols=246 Identities=15% Similarity=0.181 Sum_probs=177.0
Q ss_pred eeeC-CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccE
Q 038533 17 THES-PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHL 93 (337)
Q Consensus 17 ~~~~-~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 93 (337)
.++. .+.|++...- ..-+.+.+. |.+++|| ++.+.++.-. .+....+.+++++.+.++.. .
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~----drtvrv~-lkrds~q~wp--sI~~~mP~~~~~~~y~~e~~---------~ 82 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSE----DRTVRVW-LKRDSGQYWP--SIYHYMPSPCSAMEYVSESR---------R 82 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccc----cceeeeE-EeccccccCc--hhhhhCCCCceEeeeeccce---------E
Confidence 3443 4555555444 667778885 9999999 5555555444 44456678899999999988 8
Q ss_pred EEEeCC--eEEEEecCCC--CccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccC
Q 038533 94 LASSGD--FLRLWDVGDS--SIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHD 169 (337)
Q Consensus 94 l~~~~~--~v~vw~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 169 (337)
|..|-+ ++.-+.+... +....+....|. ..+..+-|+. ....+++.+.|..+.-.-.+.+..+..+.- .
T Consensus 83 L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~-----~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~ 155 (404)
T KOG1409|consen 83 LYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQ-----ARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNF-E 155 (404)
T ss_pred EEEEEecceEEEEEhhhhhhhcchhhhhhhhh-----cceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEe-e
Confidence 888875 7766665432 224556666777 8999999987 888999999998877655555554433221 1
Q ss_pred CceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCC
Q 038533 170 KEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTL 249 (337)
Q Consensus 170 ~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~ 249 (337)
..-+++.+. -.+...|...|.+.+-.+...... .+....+|...+.+++|.| ....|+++..|.. +.+||+.-...
T Consensus 156 ~~~t~~~~d-~~~~fvGd~~gqvt~lr~~~~~~~-~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~-vi~wdigg~~g 231 (404)
T KOG1409|consen 156 TPASALQFD-ALYAFVGDHSGQITMLKLEQNGCQ-LITTFNGHTGEVTCLKWDP-GQRLLFSGASDHS-VIMWDIGGRKG 231 (404)
T ss_pred ccCCCCcee-eEEEEecccccceEEEEEeecCCc-eEEEEcCcccceEEEEEcC-CCcEEEeccccCc-eEEEeccCCcc
Confidence 112222332 115666777788877776655533 3344446889999999999 8899999999998 99999987566
Q ss_pred CeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCC
Q 038533 250 PVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL 290 (337)
Q Consensus 250 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 290 (337)
....+.+|...|..+...+.-+ .+.+++.||.|.+|+++.
T Consensus 232 ~~~el~gh~~kV~~l~~~~~t~-~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 232 TAYELQGHNDKVQALSYAQHTR-QLISCGEDGGIVVWNMNV 271 (404)
T ss_pred eeeeeccchhhhhhhhhhhhhe-eeeeccCCCeEEEEeccc
Confidence 6678889999999998888777 899999999999999974
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=4.4e-13 Score=102.93 Aligned_cols=151 Identities=15% Similarity=0.390 Sum_probs=108.1
Q ss_pred EEEEe--cceEEEeee------eccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe
Q 038533 26 AMAVC--GQRIAVGSF------IEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS 97 (337)
Q Consensus 26 ~~~~s--~~~la~g~~------~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~ 97 (337)
.+.|+ |++|++-.. ...+-+...||.++........ +.....++|.+++|+|++. .++++.
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~---i~l~~~~~I~~~~WsP~g~--------~favi~ 78 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVES---IELKKEGPIHDVAWSPNGN--------EFAVIY 78 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccce---eeccCCCceEEEEECcCCC--------EEEEEE
Confidence 45666 777766543 1122456778777665544332 2244566799999999998 333333
Q ss_pred C--C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC---CCcEEEEeCCCccchhhhhccCCc
Q 038533 98 G--D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI---DTTCTIWDIEKGVVETQLIAHDKE 171 (337)
Q Consensus 98 ~--~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~v~d~~~~~~~~~~~~~~~~ 171 (337)
+ + .|.+||++. +.+..+.. ..+..+.|+| +|+++++++. .|.|.+||+++.+.+.... |. .
T Consensus 79 g~~~~~v~lyd~~~---~~i~~~~~-------~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~ 145 (194)
T PF08662_consen 79 GSMPAKVTLYDVKG---KKIFSFGT-------QPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-D 145 (194)
T ss_pred ccCCcccEEEcCcc---cEeEeecC-------CCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-c
Confidence 3 3 899999973 45566654 6688999999 9999999874 4679999999888877765 33 4
Q ss_pred eeEEEeC-CCcEEEEEcC------CCeEEEEECCCC
Q 038533 172 VYDICWG-EARVFASVSA------DGSVRIFDLRDK 200 (337)
Q Consensus 172 v~~~~~~-~~~~l~~~~~------dg~i~iwd~~~~ 200 (337)
+..++|+ +|++|+++.. |..++||+....
T Consensus 146 ~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 146 ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 7899999 7999998874 678899998644
No 242
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.57 E-value=1.2e-11 Score=104.48 Aligned_cols=268 Identities=14% Similarity=0.161 Sum_probs=155.9
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCC-eEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCC
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPP-TKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGD 108 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~ 108 (337)
++++++... .+|.|.+.|.+. .+... . ......+ ..+.|+||++ .+++++.| .|.++|+.+
T Consensus 5 ~~l~~V~~~---~~~~v~viD~~t--~~~~~--~--i~~~~~~h~~~~~s~Dgr--------~~yv~~rdg~vsviD~~~ 67 (369)
T PF02239_consen 5 GNLFYVVER---GSGSVAVIDGAT--NKVVA--R--IPTGGAPHAGLKFSPDGR--------YLYVANRDGTVSVIDLAT 67 (369)
T ss_dssp GGEEEEEEG---GGTEEEEEETTT---SEEE--E--EE-STTEEEEEE-TT-SS--------EEEEEETTSEEEEEETTS
T ss_pred ccEEEEEec---CCCEEEEEECCC--CeEEE--E--EcCCCCceeEEEecCCCC--------EEEEEcCCCeEEEEECCc
Confidence 455554442 389999965443 33222 1 2222333 3477999998 34444446 999999999
Q ss_pred CCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee-CCCcEEEEeCCCccchhhhhc-------cCCceeEEEeC-C
Q 038533 109 SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS-IDTTCTIWDIEKGVVETQLIA-------HDKEVYDICWG-E 179 (337)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~~~~~~~-------~~~~v~~~~~~-~ 179 (337)
. +.+..++.. ....++++++ ++++++++. ..+.+.++|.++.+.++.+.. ....+.++..+ .
T Consensus 68 ~--~~v~~i~~G------~~~~~i~~s~-DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~ 138 (369)
T PF02239_consen 68 G--KVVATIKVG------GNPRGIAVSP-DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG 138 (369)
T ss_dssp S--SEEEEEE-S------SEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS
T ss_pred c--cEEEEEecC------CCcceEEEcC-CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC
Confidence 9 566666653 4567899998 999888765 689999999999988776652 23456777777 4
Q ss_pred Cc-EEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEee---
Q 038533 180 AR-VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELE--- 255 (337)
Q Consensus 180 ~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~--- 255 (337)
.. ++++.-..+.|.+.|....+........ .........|+| ++++++++......|.++|.++.. .+..+.
T Consensus 139 ~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k-~v~~i~~g~ 214 (369)
T PF02239_consen 139 RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGK-LVALIDTGK 214 (369)
T ss_dssp SSEEEEEETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTE-EEEEEE-SS
T ss_pred CCEEEEEEccCCeEEEEEeccccccceeeec--ccccccccccCc-ccceeeecccccceeEEEeeccce-EEEEeeccc
Confidence 44 4445555688988898876544332221 235678899999 899888776555558888876521 111110
Q ss_pred ---------------------cc------------------------------cceeeEEEeCCCCCCeEEEE----cCC
Q 038533 256 ---------------------RH------------------------------RACVNAIAWAPQSRRHICSV----GDD 280 (337)
Q Consensus 256 ---------------------~~------------------------------~~~v~~~~~~~~~~~~l~~~----~~d 280 (337)
.| .+.-.-+..+|+++ ++.+. ...
T Consensus 215 ~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~-~vwvd~~~~~~~ 293 (369)
T PF02239_consen 215 KPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSR-YVWVDTFLNPDA 293 (369)
T ss_dssp SBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-S-EEEEE-TT-SSH
T ss_pred cccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCc-cEEeeccCCCCC
Confidence 00 01113467799999 77766 456
Q ss_pred CcEEEEeCCCCCCCCCCCCCceeee-eCCCceeEEEEccCCCceEEEEcC--CcEEEEe
Q 038533 281 SQAFIWELPLPPVAGPNGIDPMSMY-SAGSEINQLQWSPAQPDWLAIAFS--NKMQLLK 336 (337)
Q Consensus 281 g~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d--~~i~iw~ 336 (337)
+.|.++|.+ ++.. ...+. .....+..+.|+++|+.+..+..+ +.|.|+|
T Consensus 294 ~~v~viD~~--tl~~-----~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 294 DTVQVIDKK--TLKV-----VKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp T-EEEEECC--GTEE-----EE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEE
T ss_pred ceEEEEECc--Ccce-----eEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEE
Confidence 899999999 4211 11111 123459999999999988776643 3698886
No 243
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=7.7e-12 Score=104.65 Aligned_cols=255 Identities=15% Similarity=0.280 Sum_probs=157.8
Q ss_pred cceEEEEEecCCCcceecCCCcCCCC---CCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecC
Q 038533 44 TNRVDVVSFEPESLSIKTHPSLSFDH---PYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNN 119 (337)
Q Consensus 44 d~~i~i~~~~~~~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~ 119 (337)
.-.+.+|+.......... +.+ ..+++..+++++|+ ++|.+.+ .++|++..... .+.+...
T Consensus 10 Se~~~l~~~~~~~~~~~~-----f~~~~~~~~~~v~~~S~~G~---------lfA~~~~~~v~i~~~~~~~--~~lt~~~ 73 (566)
T KOG2315|consen 10 SEGFYLFNGPGSKDAVTV-----FEQNKTSRPCNVFAYSNNGR---------LFAYSDNQVVKVFEIATLK--VVLCVEL 73 (566)
T ss_pred cceeEEeccCCccccccc-----cccCCCCCcceeEEEcCCCc---------EEEEEcCCeEEEEEccCCc--EEEEecc
Confidence 455666655443333322 233 34578889999998 9999987 99999998884 2222222
Q ss_pred CCCCcccCCeeEEEeecCCCCeEEEee----------CCCcEEEEeCCCccchhhhh-----------------------
Q 038533 120 SKSSEFCAPLTSFDWNEIEPKRIGTCS----------IDTTCTIWDIEKGVVETQLI----------------------- 166 (337)
Q Consensus 120 ~~~~~~~~~i~~~~~~~~~~~~l~~~~----------~dg~i~v~d~~~~~~~~~~~----------------------- 166 (337)
..+.++.|+| .++++.+=- ..-.+++|+++++.....+.
T Consensus 74 -------~~~~~L~fSP-~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~ 145 (566)
T KOG2315|consen 74 -------KKTYDLLFSP-KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVS 145 (566)
T ss_pred -------ceeeeeeecc-cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhc
Confidence 4578999999 777776631 13457899998753222111
Q ss_pred -----------------ccCCceeEEEeCCC---cEEEE-----EcCCCeEEEEECCCCCC--------------cee--
Q 038533 167 -----------------AHDKEVYDICWGEA---RVFAS-----VSADGSVRIFDLRDKEH--------------STI-- 205 (337)
Q Consensus 167 -----------------~~~~~v~~~~~~~~---~~l~~-----~~~dg~i~iwd~~~~~~--------------~~~-- 205 (337)
-|...|..+.++++ ..+++ .+.-+.+++|....... ...
T Consensus 146 nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~W 225 (566)
T KOG2315|consen 146 NEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKW 225 (566)
T ss_pred ceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEe
Confidence 12334666666632 22222 23345566665541100 000
Q ss_pred -----------------------------eecC--------CCCCCCceEEEeecCCCcEEEE-EEecCCEEEEEECCCC
Q 038533 206 -----------------------------IYES--------PQPDTPLLRLAWNKQDLRYMAT-ILMDSNKVVILDIRSP 247 (337)
Q Consensus 206 -----------------------------~~~~--------~~~~~~i~~~~~~~~~~~~l~~-~~~d~~~i~i~d~~~~ 247 (337)
+... -...++|.++.|+| +++.+++ .+.--..+.|||++
T Consensus 226 N~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr-- 302 (566)
T KOG2315|consen 226 NKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLR-- 302 (566)
T ss_pred ccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECC-CCCEEEEEEecccceEEEEcCC--
Confidence 0000 01358999999999 6655544 44444459999998
Q ss_pred CCCeEEeecccceeeEEEeCCCCCCeEEEEcC---CCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceE
Q 038533 248 TLPVAELERHRACVNAIAWAPQSRRHICSVGD---DSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWL 324 (337)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 324 (337)
..++..+. .++=+++-|+|.|+ +++.++. -|.|.|||+. +.. .+.. -....-+-+.|+|||++++
T Consensus 303 ~~~v~df~--egpRN~~~fnp~g~-ii~lAGFGNL~G~mEvwDv~--n~K------~i~~-~~a~~tt~~eW~PdGe~fl 370 (566)
T KOG2315|consen 303 GKPVFDFP--EGPRNTAFFNPHGN-IILLAGFGNLPGDMEVWDVP--NRK------LIAK-FKAANTTVFEWSPDGEYFL 370 (566)
T ss_pred CCEeEeCC--CCCccceEECCCCC-EEEEeecCCCCCceEEEecc--chh------hccc-cccCCceEEEEcCCCcEEE
Confidence 45666664 46778999999999 7776664 4789999999 311 1111 1122346689999999999
Q ss_pred EEEc------CCcEEEEeC
Q 038533 325 AIAF------SNKMQLLKV 337 (337)
Q Consensus 325 ~~~~------d~~i~iw~l 337 (337)
++.. |+.++||+.
T Consensus 371 TATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 371 TATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred EEeccccEEecCCeEEEEe
Confidence 7653 799999973
No 244
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.55 E-value=9.4e-13 Score=103.71 Aligned_cols=240 Identities=14% Similarity=0.212 Sum_probs=173.5
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCC-CCccceeeecCCCCCcccCCeeEEEeecCCCCeEE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGD-SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIG 143 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 143 (337)
.+|.+.+++...-|... -+.+.+ | +++||--.+ ++.-+. ....-. .+++++.+++ +...|+
T Consensus 21 eG~~d~vn~~~l~~~e~---------gv~~~s~drtvrv~lkrds~q~wps-I~~~mP-----~~~~~~~y~~-e~~~L~ 84 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEE---------GVISVSEDRTVRVWLKRDSGQYWPS-IYHYMP-----SPCSAMEYVS-ESRRLY 84 (404)
T ss_pred cCchhhhhhheeccCCC---------CeEEccccceeeeEEeccccccCch-hhhhCC-----CCceEeeeec-cceEEE
Confidence 68888888888777776 556666 5 999996443 321111 111111 7899999998 889999
Q ss_pred EeeCCCcEEEEeCC----CccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceE
Q 038533 144 TCSIDTTCTIWDIE----KGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLR 218 (337)
Q Consensus 144 ~~~~dg~i~v~d~~----~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~ 218 (337)
+|-.+|++.-+.+. .....+....|...+..+-|+ +..++++.+.|..+.---.+.+........ .....+
T Consensus 85 vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~----~~~~t~ 160 (404)
T KOG1409|consen 85 VGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF----ETPASA 160 (404)
T ss_pred EEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe----eccCCC
Confidence 99999999988653 445667777899999999999 889999999998875544444432221111 122233
Q ss_pred EEeecCCCcEEEEEEecCCEEEEEECCCC-CCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCC
Q 038533 219 LAWNKQDLRYMATILMDSNKVVILDIRSP-TLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPN 297 (337)
Q Consensus 219 ~~~~~~~~~~l~~~~~d~~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 297 (337)
+.+.- .+...|...+. |.+-.+... -.++.++.+|...+.+++|.|... +|++|..|..+.+||+...+
T Consensus 161 ~~~d~---~~~fvGd~~gq-vt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~-~LfSg~~d~~vi~wdigg~~----- 230 (404)
T KOG1409|consen 161 LQFDA---LYAFVGDHSGQ-ITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQR-LLFSGASDHSVIMWDIGGRK----- 230 (404)
T ss_pred Cceee---EEEEecccccc-eEEEEEeecCCceEEEEcCcccceEEEEEcCCCc-EEEeccccCceEEEeccCCc-----
Confidence 33322 14445555554 555444321 357888999999999999999988 99999999999999998332
Q ss_pred CCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 298 GIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 298 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
......++|...|..+...+.-+.+++++.||.|.+|++
T Consensus 231 -g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 231 -GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred -ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEec
Confidence 124578899999999999998889999999999999985
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=8.6e-12 Score=109.02 Aligned_cols=218 Identities=13% Similarity=0.201 Sum_probs=135.9
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC----C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCe
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG----D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKR 141 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~----~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 141 (337)
..+...+....|+|+++ .|+..+ . .|.+|++.+++.+.+.... ..+...+|+| +++.
T Consensus 195 ~~~~~~~~~p~wSpDG~---------~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~--------g~~~~~~~Sp-DG~~ 256 (430)
T PRK00178 195 LQSREPILSPRWSPDGK---------RIAYVSFEQKRPRIFVQNLDTGRREQITNFE--------GLNGAPAWSP-DGSK 256 (430)
T ss_pred ecCCCceeeeeECCCCC---------EEEEEEcCCCCCEEEEEECCCCCEEEccCCC--------CCcCCeEECC-CCCE
Confidence 45677889999999998 665543 2 7999999988533332222 3345689999 8887
Q ss_pred EE-EeeCCC--cEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcC-CC--eEEEEECCCCCCceeeecCCCCCC
Q 038533 142 IG-TCSIDT--TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSA-DG--SVRIFDLRDKEHSTIIYESPQPDT 214 (337)
Q Consensus 142 l~-~~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~ 214 (337)
|+ +.+.+| .|+++|+.+++.. .+..+........|+ +++.++..+. +| .|.++|+.+++........ .
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~----~ 331 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG----N 331 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC----C
Confidence 76 444455 5888899877643 344455556678899 6777765553 33 5777788777643332211 2
Q ss_pred CceEEEeecCCCcEEEEEEecCC--EEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCc--EEEEeCCC
Q 038533 215 PLLRLAWNKQDLRYMATILMDSN--KVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQ--AFIWELPL 290 (337)
Q Consensus 215 ~i~~~~~~~~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iw~~~~ 290 (337)
......|+| +++.++..+.++. .|.++|+.+. . ...+.. ........|+|+|+.++++...+|. |.++++.
T Consensus 332 ~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg-~-~~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~- 406 (430)
T PRK00178 332 YNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRG-S-VRILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN- 406 (430)
T ss_pred CccceEECC-CCCEEEEEEccCCceEEEEEECCCC-C-EEEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 334578999 8888887765432 4888998863 2 233322 2223356899999944444444444 5555554
Q ss_pred CCCCCCCCCCceeeeeCCCceeEEEEccC
Q 038533 291 PPVAGPNGIDPMSMYSAGSEINQLQWSPA 319 (337)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 319 (337)
. .....+..+.+.+...+|+|-
T Consensus 407 -g------~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 407 -G------RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred -C------CceEECcCCCCCcCCCccCCC
Confidence 2 122233344556777888874
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=9.1e-13 Score=117.49 Aligned_cols=192 Identities=18% Similarity=0.211 Sum_probs=148.3
Q ss_pred eeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCce-eE---EEeC-CCcEEEEEcCCCeEEEEECCCCCCc
Q 038533 129 LTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEV-YD---ICWG-EARVFASVSADGSVRIFDLRDKEHS 203 (337)
Q Consensus 129 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v-~~---~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 203 (337)
|....+.. +...++.+..+..+.+||...+.....+...+... .+ +..+ +.-++++|+.-+.|.+|+....+..
T Consensus 90 i~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p 168 (967)
T KOG0974|consen 90 IFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP 168 (967)
T ss_pred ccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc
Confidence 33344443 66788888889999999998887766665333221 11 1122 3567889999999999999844433
Q ss_pred eeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcE
Q 038533 204 TIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQA 283 (337)
Q Consensus 204 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 283 (337)
. ...+|++.|.++.|+. ++.++++.++|.. +++|++.+...+....-+|...|..++|.|+ .+++++.|-+.
T Consensus 169 ~---~l~GHeG~iF~i~~s~-dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctc 240 (967)
T KOG0974|consen 169 I---RLKGHEGSIFSIVTSL-DGRYIASVSDDRS-IRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTC 240 (967)
T ss_pred c---eecccCCceEEEEEcc-CCcEEEEEecCcc-eeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEE
Confidence 3 2336899999999998 9999999999999 9999999866555466789999999999998 69999999999
Q ss_pred EEEeCCCCCCCCCCCCCceeeeeC-CCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 284 FIWELPLPPVAGPNGIDPMSMYSA-GSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 284 ~iw~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
++|+.+ +.....+..| ...|..++..++....++++.|+.+++|++
T Consensus 241 rvW~~~--------~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 241 RVWGVN--------GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred EEEecc--------cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 999777 2223345555 456999999999988999999999999974
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=1e-11 Score=108.27 Aligned_cols=218 Identities=17% Similarity=0.187 Sum_probs=135.1
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC---C--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCe
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG---D--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKR 141 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~---~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 141 (337)
..+...+....|+||++ .|+..+ + .|.+||+.+++.+.+..+. ......+|+| +++.
T Consensus 214 ~~~~~~~~~p~wSPDG~---------~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~--------g~~~~~~wSP-DG~~ 275 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGR---------KLAYVSFENRKAEIFVQDIYTQVREKVTSFP--------GINGAPRFSP-DGKK 275 (448)
T ss_pred ecCCCcccCceECCCCC---------EEEEEEecCCCcEEEEEECCCCCeEEecCCC--------CCcCCeeECC-CCCE
Confidence 45677889999999998 666543 2 7999999887533333332 2334689999 8887
Q ss_pred EEE-eeCCCc--EEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcC-CC--eEEEEECCCCCCceeeecCCCCCC
Q 038533 142 IGT-CSIDTT--CTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSA-DG--SVRIFDLRDKEHSTIIYESPQPDT 214 (337)
Q Consensus 142 l~~-~~~dg~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~ 214 (337)
|+. .+.+|. |.++|+.+++. ..+..+.......+|+ +++.++..+. ++ .|.++|+.+++........ .
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g----~ 350 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG----E 350 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCC----C
Confidence 664 556665 77788877754 3344455556778999 6777765543 33 4666777776643332221 2
Q ss_pred CceEEEeecCCCcEEEEEEecCC--EEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCc--EEEEeCCC
Q 038533 215 PLLRLAWNKQDLRYMATILMDSN--KVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQ--AFIWELPL 290 (337)
Q Consensus 215 ~i~~~~~~~~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iw~~~~ 290 (337)
......|+| ++++|+..+.++. .|.++|+.+ +. ...+... .......|+|+|+.++++...+|. +.+++.+
T Consensus 351 ~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~-g~-~~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~- 425 (448)
T PRK04792 351 QNLGGSITP-DGRSMIMVNRTNGKFNIARQDLET-GA-MQVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID- 425 (448)
T ss_pred CCcCeeECC-CCCEEEEEEecCCceEEEEEECCC-CC-eEEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-
Confidence 234578999 8888877666443 366678766 32 2333322 122345899999944555555554 5555654
Q ss_pred CCCCCCCCCCceeeeeCCCceeEEEEccC
Q 038533 291 PPVAGPNGIDPMSMYSAGSEINQLQWSPA 319 (337)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 319 (337)
+.....+..+.+.+...+|+|-
T Consensus 426 -------G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 426 -------GRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred -------CCceEECcCCCCCcCCCccCCC
Confidence 2223334445566778888874
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=3.3e-11 Score=104.33 Aligned_cols=222 Identities=14% Similarity=0.113 Sum_probs=132.9
Q ss_pred CCCCCCeEEEecCCCCcccCcCCccE-E-EEeC---C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCe
Q 038533 68 DHPYPPTKLMFDPNSSSRKSSSNRHL-L-ASSG---D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKR 141 (337)
Q Consensus 68 ~~~~~i~~i~~~~~~~~~~~~~~~~~-l-~~~~---~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 141 (337)
.....+..-+|+||++ .+ + .++. . .|.+.++.+++.+.+..+.+ .....+|+| +++.
T Consensus 182 ~~~~~~~sP~wSPDG~--------~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g--------~~~~p~wSP-DG~~ 244 (428)
T PRK01029 182 QEHSLSITPTWMHIGS--------GFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG--------NQLMPTFSP-RKKL 244 (428)
T ss_pred cCCCCcccceEccCCC--------ceEEEEEEccCCCceEEEEECCCCCceEeecCCC--------CccceEECC-CCCE
Confidence 3455567789999987 22 2 2332 2 89999999885444444443 345689999 9988
Q ss_pred EEEeeC-CC----cEEEEeCCCc---cchhhhhccCCceeEEEeC-CCcEEEEEc-CCCeEEEE--ECCCC-CCceeeec
Q 038533 142 IGTCSI-DT----TCTIWDIEKG---VVETQLIAHDKEVYDICWG-EARVFASVS-ADGSVRIF--DLRDK-EHSTIIYE 208 (337)
Q Consensus 142 l~~~~~-dg----~i~v~d~~~~---~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-~dg~i~iw--d~~~~-~~~~~~~~ 208 (337)
|+..+. +| .+..|++..+ +...............+|+ +++.|+..+ .+|...+| ++... .....+.
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt- 323 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT- 323 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-
Confidence 776543 22 3444676653 2222222222344678999 788777655 46655555 44322 2122221
Q ss_pred CCCCCCCceEEEeecCCCcEEEEEEecC--CEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCC--CcEE
Q 038533 209 SPQPDTPLLRLAWNKQDLRYMATILMDS--NKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDD--SQAF 284 (337)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~ 284 (337)
. ....+....|+| +++.|+..+.++ ..|.+||+.+ ++ ...+......+....|+|+|+.+++++..+ ..|.
T Consensus 324 ~--~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~-g~-~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 324 K--KYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLAT-GR-DYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred c--CCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCC-CC-eEEccCCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 1 234567889999 899888766542 2499999987 33 334433334567899999999444455443 4577
Q ss_pred EEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCC
Q 038533 285 IWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQ 320 (337)
Q Consensus 285 iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 320 (337)
++++..++ ...+....+.+...+|+|..
T Consensus 399 ~vdl~~g~--------~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 399 LISLITKK--------TRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEECCCCC--------EEEeecCCCcccCceecCCC
Confidence 77877221 33333445567788998854
No 249
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.51 E-value=1.5e-11 Score=107.35 Aligned_cols=195 Identities=13% Similarity=0.163 Sum_probs=125.2
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC----C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCe
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG----D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKR 141 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~----~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 141 (337)
..+...+...+|+|+++ .|+... . .|.+||+.+++...+ ..+. ..+.+++|+| +++.
T Consensus 186 ~~~~~~~~~p~~Spdg~---------~la~~~~~~~~~~i~v~d~~~g~~~~~---~~~~-----~~~~~~~~sp-Dg~~ 247 (417)
T TIGR02800 186 TRSREPILSPAWSPDGQ---------KLAYVSFESGKPEIYVQDLATGQREKV---ASFP-----GMNGAPAFSP-DGSK 247 (417)
T ss_pred ecCCCceecccCCCCCC---------EEEEEEcCCCCcEEEEEECCCCCEEEe---ecCC-----CCccceEECC-CCCE
Confidence 45666788999999999 666543 2 899999988743322 2222 4566789999 8876
Q ss_pred EE-EeeCCC--cEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcC-CC--eEEEEECCCCCCceeeecCCCCCC
Q 038533 142 IG-TCSIDT--TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSA-DG--SVRIFDLRDKEHSTIIYESPQPDT 214 (337)
Q Consensus 142 l~-~~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~ 214 (337)
|+ +.+.++ .|++||+.+++.. .+..+........|+ +++.|+..+. ++ .|.++|+.+++...... +..
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~----~~~ 322 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTF----RGG 322 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec----CCC
Confidence 65 444444 5888998876533 333344445567888 6777776554 33 57788887765332221 234
Q ss_pred CceEEEeecCCCcEEEEEEecCC--EEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCC---cEEEEeCC
Q 038533 215 PLLRLAWNKQDLRYMATILMDSN--KVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDS---QAFIWELP 289 (337)
Q Consensus 215 ~i~~~~~~~~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iw~~~ 289 (337)
....+.|+| ++++++..+.++. .|.+||+.+ +. ...+... .......|+|+++ .|+..+.++ .+.+.+..
T Consensus 323 ~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~-~~-~~~l~~~-~~~~~p~~spdg~-~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 323 YNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDG-GG-ERVLTDT-GLDESPSFAPNGR-MILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CccCeEECC-CCCEEEEEEccCCceEEEEEeCCC-CC-eEEccCC-CCCCCceECCCCC-EEEEEEeCCCcEEEEEEECC
Confidence 567789999 8888888777651 388999876 32 3333322 2345668999999 665555443 34444444
No 250
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.51 E-value=2.3e-13 Score=107.15 Aligned_cols=213 Identities=11% Similarity=0.167 Sum_probs=147.2
Q ss_pred eeCCCceeEEEEe----cceEEEeeeeccCcceEEEEEecCCCcce-------------------------------ecC
Q 038533 18 HESPYPLYAMAVC----GQRIAVGSFIEDYTNRVDVVSFEPESLSI-------------------------------KTH 62 (337)
Q Consensus 18 ~~~~~~v~~~~~s----~~~la~g~~~~~~d~~i~i~~~~~~~~~~-------------------------------~~~ 62 (337)
+.....|..++|. ...++..++ |.+|++|.+....... ...
T Consensus 81 leieEKinkIrw~~~~n~a~FLlstN----dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~pr 156 (433)
T KOG1354|consen 81 LEIEEKINKIRWLDDGNLAEFLLSTN----DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPR 156 (433)
T ss_pred hhhhhhhhhceecCCCCccEEEEecC----CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeee
Confidence 3445679999998 344555555 9999999986543222 011
Q ss_pred CCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCC-ccceeeecCCCCCcccCCeeEEEeecCCCC
Q 038533 63 PSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSS-IEPVAVLNNSKSSEFCAPLTSFDWNEIEPK 140 (337)
Q Consensus 63 ~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 140 (337)
......|+.-|++|.++.|.. .+.++.| .|.+|++.-.. .-.+..++.+.-++...-|++..|+|...+
T Consensus 157 Rv~aNaHtyhiNSIS~NsD~E---------t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn 227 (433)
T KOG1354|consen 157 RVYANAHTYHINSISVNSDKE---------TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCN 227 (433)
T ss_pred eeccccceeEeeeeeecCccc---------eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHcc
Confidence 122346888899999999998 9999999 99999987432 122333444444444467999999998889
Q ss_pred eEEEeeCCCcEEEEeCCCccc----hhh------------hhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCc
Q 038533 141 RIGTCSIDTTCTIWDIEKGVV----ETQ------------LIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHS 203 (337)
Q Consensus 141 ~l~~~~~dg~i~v~d~~~~~~----~~~------------~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 203 (337)
.++-.+..|+|++.|++.... .+. +.+--..|.++.|+ .|+++++-+. -+|++||+.....+
T Consensus 228 ~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~p 306 (433)
T KOG1354|consen 228 VFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKP 306 (433)
T ss_pred EEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCc
Confidence 999999999999999985321 011 11222458899999 7899988665 58999999665444
Q ss_pred eeeecCCC----------CCCCc---eEEEeecCCCcEEEEEEecCCEEEEEECCC
Q 038533 204 TIIYESPQ----------PDTPL---LRLAWNKQDLRYMATILMDSNKVVILDIRS 246 (337)
Q Consensus 204 ~~~~~~~~----------~~~~i---~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~ 246 (337)
...+..+. .+..| ..++|+. ++.++++|+..+. +++|+...
T Consensus 307 v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~-frvf~~~~ 360 (433)
T KOG1354|consen 307 VETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNV-FRVFNLAR 360 (433)
T ss_pred ceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccce-EEEecCCC
Confidence 43333211 11222 3578887 8889999999998 99999543
No 251
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=1.3e-11 Score=106.48 Aligned_cols=282 Identities=16% Similarity=0.223 Sum_probs=194.7
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceec-----------CCCcCCCCCCCCeEEEecCCCCcc
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKT-----------HPSLSFDHPYPPTKLMFDPNSSSR 85 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~-----------~~~~~~~~~~~i~~i~~~~~~~~~ 85 (337)
+......|++|+ ..++|+|+. ||.+++..++.++..... .+.+ .+|++.|.-+.|+.+..
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~----dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~~Q-- 84 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGA----DGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNENNQ-- 84 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccc----cceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEeccccc--
Confidence 345678999999 899999997 999999988765432221 1233 78999999999999887
Q ss_pred cCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccch-
Q 038533 86 KSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVE- 162 (337)
Q Consensus 86 ~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~- 162 (337)
-|.++. + .|.||-+-.++.-....-...+ +.|.+++|+. +|..++....||.|.+=.++..+..
T Consensus 85 -------KLTtSDt~GlIiVWmlykgsW~EEMiNnRnK-----SvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwg 151 (1189)
T KOG2041|consen 85 -------KLTTSDTSGLIIVWMLYKGSWCEEMINNRNK-----SVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWG 151 (1189)
T ss_pred -------cccccCCCceEEEEeeecccHHHHHhhCcCc-----cEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecc
Confidence 777766 4 9999999888642222222333 7799999998 9999999999999999887655422
Q ss_pred hhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCc-----e--eee-cCCCCCCCceEEEee-------cCCC
Q 038533 163 TQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHS-----T--IIY-ESPQPDTPLLRLAWN-------KQDL 226 (337)
Q Consensus 163 ~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~-----~--~~~-~~~~~~~~i~~~~~~-------~~~~ 226 (337)
+.+++ .....+.|+ +.+.++.+-.+|.+.+||....-.. . ... ........|..+.|. |++.
T Consensus 152 KeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 152 KELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred hhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 22222 234578899 7778888888999999998653111 0 000 000112335566664 2367
Q ss_pred cEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCC---------cEEEEeCCCCCCCCCC
Q 038533 227 RYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDS---------QAFIWELPLPPVAGPN 297 (337)
Q Consensus 227 ~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---------~i~iw~~~~~~~~~~~ 297 (337)
..|+++-.+|. +.+..-.+...|+-.-. .-.+..+.|+++|. +|+.++.|. .|.+|..-
T Consensus 230 P~lavcy~nGr-~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~-vLAvcG~~~da~~~~d~n~v~Fysp~-------- 297 (1189)
T KOG2041|consen 230 PRLAVCYANGR-MQIMRSENDPEPVVVDT--GMKIVGAKWNHNGA-VLAVCGNDSDADEPTDSNKVHFYSPY-------- 297 (1189)
T ss_pred CEEEEEEcCce-ehhhhhcCCCCCeEEec--ccEeecceecCCCc-EEEEccCcccccCccccceEEEeccc--------
Confidence 78899888887 88877666555553333 36788999999999 999988652 34444332
Q ss_pred CCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEE
Q 038533 298 GIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLL 335 (337)
Q Consensus 298 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 335 (337)
|.....+......|++++|-..| .=++.+.|+.|.+=
T Consensus 298 G~i~gtlkvpg~~It~lsWEg~g-LriA~Avdsfiyfa 334 (1189)
T KOG2041|consen 298 GHIVGTLKVPGSCITGLSWEGTG-LRIAIAVDSFIYFA 334 (1189)
T ss_pred hhheEEEecCCceeeeeEEcCCc-eEEEEEecceEEEE
Confidence 33344566667789999998877 34555567666653
No 252
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.49 E-value=2.9e-13 Score=116.64 Aligned_cols=247 Identities=17% Similarity=0.310 Sum_probs=173.3
Q ss_pred CCCceeEEEEe----cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 20 SPYPLYAMAVC----GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 20 ~~~~v~~~~~s----~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
.+..|-.+.|+ ..+-++... ...-.+|++......... ....+|..+|+.+-|+|+.+ .++|
T Consensus 66 tpw~vad~qws~h~a~~~wiVsts----~qkaiiwnlA~ss~~aIe--f~lhghsraitd~n~~~q~p--------dVla 131 (1081)
T KOG0309|consen 66 TPWQVADVQWSPHPAKPYWIVSTS----NQKAIIWNLAKSSSNAIE--FVLHGHSRAITDINFNPQHP--------DVLA 131 (1081)
T ss_pred CcchhcceecccCCCCceeEEecC----cchhhhhhhhcCCccceE--EEEecCccceeccccCCCCC--------ccee
Confidence 36778889998 344444443 677788988765443221 22389999999999999988 7999
Q ss_pred EeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc-chhhhhccCCce
Q 038533 96 SSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV-VETQLIAHDKEV 172 (337)
Q Consensus 96 ~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v 172 (337)
+++ | .+..||++... .+......-. .....++|+-.+++.+|+ +....|.+||++.+. ++..+++|-..|
T Consensus 132 tcsvdt~vh~wd~rSp~-~p~ys~~~w~-----s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~v 204 (1081)
T KOG0309|consen 132 TCSVDTYVHAWDMRSPH-RPFYSTSSWR-----SAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSV 204 (1081)
T ss_pred eccccccceeeeccCCC-cceeeeeccc-----ccCceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceee
Confidence 999 7 99999999876 3444443332 567789999856665555 566789999998775 677888899999
Q ss_pred eEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEE---------
Q 038533 173 YDICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI--------- 241 (337)
Q Consensus 173 ~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i--------- 241 (337)
+.++|+ -...+.+.+.||+|++||............ ..+.++..-.+-|....+.+.-...+..+.+
T Consensus 205 n~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v--tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e 282 (1081)
T KOG0309|consen 205 NSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV--TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE 282 (1081)
T ss_pred ehHHHhhhhhhhhcccCCCCceeeecccccccccceec--cccCcceeccccccCceeEeccccCCeeeeeccccchhhh
Confidence 999998 467889999999999999876543222111 1235666666666333333222222212333
Q ss_pred EECCCCCCCeEEeecccceeeEEEeCCCC---------CCeEEEEcCCCcEEEEeCC
Q 038533 242 LDIRSPTLPVAELERHRACVNAIAWAPQS---------RRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~l~~~~~dg~i~iw~~~ 289 (337)
|+..+..++++.+.+|...|....|-..+ ...|+|-+.|..+++|-+.
T Consensus 283 ~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 283 WNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred hccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 44444557899999999988777775432 2369999999999999987
No 253
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.48 E-value=3.3e-12 Score=99.56 Aligned_cols=254 Identities=16% Similarity=0.258 Sum_probs=166.9
Q ss_pred CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCc-ceecCCCc-----------CCCCCCCCeEEEecCCCCcc
Q 038533 20 SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESL-SIKTHPSL-----------SFDHPYPPTKLMFDPNSSSR 85 (337)
Q Consensus 20 ~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~-~~~~~~~~-----------~~~~~~~i~~i~~~~~~~~~ 85 (337)
..+.|+++.|. |.+||+|.. .|+|.+|.-....+ +......+ ...-...|..|.|..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDk----gGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~-- 98 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDK----GGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG-- 98 (460)
T ss_pred ccceeeEEEeccccceEeecCC----CceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCC--
Confidence 35679999999 999999986 89999976543321 11000000 112346789999987654
Q ss_pred cCcCCccEEEEeCC-eEEEEecCCCCccc-------------------------eeeecCCC-----------CCcccCC
Q 038533 86 KSSSNRHLLASSGD-FLRLWDVGDSSIEP-------------------------VAVLNNSK-----------SSEFCAP 128 (337)
Q Consensus 86 ~~~~~~~~l~~~~~-~v~vw~~~~~~~~~-------------------------~~~~~~~~-----------~~~~~~~ 128 (337)
..++|+++.+ +|++|.+....++. +..+..|. ...|.-.
T Consensus 99 ----r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh 174 (460)
T COG5170 99 ----RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH 174 (460)
T ss_pred ----cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence 3468888888 99999986531110 01111111 1122256
Q ss_pred eeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc---chhhhhcc-----CCceeEEEeCC--CcEEEEEcCCCeEEEEECC
Q 038533 129 LTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV---VETQLIAH-----DKEVYDICWGE--ARVFASVSADGSVRIFDLR 198 (337)
Q Consensus 129 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---~~~~~~~~-----~~~v~~~~~~~--~~~l~~~~~dg~i~iwd~~ 198 (337)
|.++.|+. +...++++. |-.|.+|+++-.. .+..++.| ..-|++..|+| .+.+...+..|.|++-|+|
T Consensus 175 iNSiS~Ns-D~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 175 INSISFNS-DKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred eeeeeecC-chheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 78899987 777777764 6789999876432 12222333 34578889993 6788888999999999999
Q ss_pred CCCCce---eeecC----------CCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccc------
Q 038533 199 DKEHST---IIYES----------PQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRA------ 259 (337)
Q Consensus 199 ~~~~~~---~~~~~----------~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~------ 259 (337)
...... .+... .+-...|..+.|++ +++++++-..- ++++||.+....|++++.-|..
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdyl--tvkiwDvnm~k~pikTi~~h~~l~~~l~ 329 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDYL--TVKIWDVNMAKNPIKTIPMHCDLMDELN 329 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEeccc--eEEEEecccccCCceeechHHHHHHHHH
Confidence 543110 11100 01235688899999 99999875443 4999999998899998876632
Q ss_pred ------ee---eEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 260 ------CV---NAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 260 ------~v---~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
.| ..+.|+.+.+ .+++|+..+..-+|-..
T Consensus 330 d~YEnDaifdkFeisfSgd~~-~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 330 DVYENDAIFDKFEISFSGDDK-HVLSGSYSNNFGIYPTD 367 (460)
T ss_pred hhhhccceeeeEEEEecCCcc-cccccccccceeeeccc
Confidence 22 4578888888 88899888887777644
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=2.6e-11 Score=105.87 Aligned_cols=204 Identities=15% Similarity=0.211 Sum_probs=132.5
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCC---CcEEEEeCCCccchhhhhccCCceeEEE
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSID---TTCTIWDIEKGVVETQLIAHDKEVYDIC 176 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~ 176 (337)
.|.++|..... ...+..+. ..+...+|+| +++.++.+..+ ..|++||+.+++... +..+...+.+++
T Consensus 171 ~l~~~d~~g~~---~~~l~~~~-----~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~ 240 (417)
T TIGR02800 171 ELQVADYDGAN---PQTITRSR-----EPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPA 240 (417)
T ss_pred eEEEEcCCCCC---CEEeecCC-----CceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceE
Confidence 68888876552 23343443 5688899999 99988887644 479999998875432 233455667789
Q ss_pred eC-CCcEEE-EEcCCC--eEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC--EEEEEECCCCCCC
Q 038533 177 WG-EARVFA-SVSADG--SVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN--KVVILDIRSPTLP 250 (337)
Q Consensus 177 ~~-~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~--~i~i~d~~~~~~~ 250 (337)
|+ +++.|+ +.+.++ .|.+||+.++..... .. +........|+| +++.|+..+..+. .|+++|+.. +.
T Consensus 241 ~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l-~~---~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~-~~- 313 (417)
T TIGR02800 241 FSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL-TN---GPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADG-GE- 313 (417)
T ss_pred ECCCCCEEEEEECCCCCccEEEEECCCCCEEEC-CC---CCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCC-CC-
Confidence 99 677665 444444 588899887653222 11 223445678999 8888877665432 388888775 32
Q ss_pred eEEeecccceeeEEEeCCCCCCeEEEEcCCC---cEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEE
Q 038533 251 VAELERHRACVNAIAWAPQSRRHICSVGDDS---QAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIA 327 (337)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 327 (337)
...+..+...+..+.|+|+++ +++.++.++ .|.+||+..+. ...+.. ........|+|+++.|+.++
T Consensus 314 ~~~l~~~~~~~~~~~~spdg~-~i~~~~~~~~~~~i~~~d~~~~~--------~~~l~~-~~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 314 VRRLTFRGGYNASPSWSPDGD-LIAFVHREGGGFNIAVMDLDGGG--------ERVLTD-TGLDESPSFAPNGRMILYAT 383 (417)
T ss_pred EEEeecCCCCccCeEECCCCC-EEEEEEccCCceEEEEEeCCCCC--------eEEccC-CCCCCCceECCCCCEEEEEE
Confidence 344444556677889999999 777666654 67788877211 112221 22345568999999888777
Q ss_pred cCC
Q 038533 328 FSN 330 (337)
Q Consensus 328 ~d~ 330 (337)
.++
T Consensus 384 ~~~ 386 (417)
T TIGR02800 384 TRG 386 (417)
T ss_pred eCC
Confidence 543
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.46 E-value=2.6e-11 Score=102.18 Aligned_cols=186 Identities=18% Similarity=0.243 Sum_probs=143.7
Q ss_pred cEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEee------c-------------CCCCeEEEeeCCCc
Q 038533 92 HLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWN------E-------------IEPKRIGTCSIDTT 150 (337)
Q Consensus 92 ~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~-------------~~~~~l~~~~~dg~ 150 (337)
.++|... | .+++|+...++ ....+..... ..+..++..|. | .+...++-|...|.
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~--~~~e~~p~~~--~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQ--LQQEFAPIAS--LSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred heEeecCCCCeEEEEEccCce--eeeeeccchh--ccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3666655 4 99999999884 3333322110 01334444443 1 13357888999999
Q ss_pred EEEEeCCCccchhhhh--ccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCc
Q 038533 151 CTIWDIEKGVVETQLI--AHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLR 227 (337)
Q Consensus 151 i~v~d~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 227 (337)
|.+|+...++....+. .|.+.|+++.++ .-..|.+++.|+.+..|+....+....... .+..+.+++.+| ++.
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~---~~~~~~sl~is~-D~~ 157 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE---QKPLVSSLCISP-DGK 157 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc---CCCccceEEEcC-CCC
Confidence 9999999998766665 789999999999 788999999999999999998875554433 456789999999 899
Q ss_pred EEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCC-----CCCeEEEEcCCCcEEEEeCC
Q 038533 228 YMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQ-----SRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 228 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~dg~i~iw~~~ 289 (337)
.+++++.. |++||+.+ ++.+.++.+|.++|+++.|--. |.++|.+...+..+.+|-++
T Consensus 158 ~l~~as~~---ik~~~~~~-kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 158 ILLTASRQ---IKVLDIET-KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred EEEeccce---EEEEEccC-ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 99988754 99999999 7789999999999999999877 77567777778889999887
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=2.9e-12 Score=114.32 Aligned_cols=178 Identities=16% Similarity=0.203 Sum_probs=136.4
Q ss_pred CeEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC
Q 038533 99 DFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG 178 (337)
Q Consensus 99 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 178 (337)
+.+-+||.... .....+.... ...-....-+-+++ +.-++++|+.-+.|.+|+....+.-..+.+|++.|.++.++
T Consensus 109 ns~~i~d~~~~--~~~~~i~~~e-r~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s 184 (967)
T KOG0974|consen 109 NSLLIRDSKNS--SVLSKIQSDE-RCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTS 184 (967)
T ss_pred ceEEEEecccC--ceehhcCCCc-eEEEEeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEc
Confidence 48889988776 2333333221 00001111233444 66799999999999999987444333578999999999999
Q ss_pred -CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecc
Q 038533 179 -EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERH 257 (337)
Q Consensus 179 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~ 257 (337)
++.++++++.|.++++|++.+.+.... ...+|...+..++|.| + .+++++.|.. .++|+..- ..+..+..|
T Consensus 185 ~dg~~i~s~SdDRsiRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~-n--~i~t~gedct-crvW~~~~--~~l~~y~~h 256 (967)
T KOG0974|consen 185 LDGRYIASVSDDRSIRLWPIDSREVLGC--TGFGHSARVWACCFLP-N--RIITVGEDCT-CRVWGVNG--TQLEVYDEH 256 (967)
T ss_pred cCCcEEEEEecCcceeeeecccccccCc--ccccccceeEEEEecc-c--eeEEeccceE-EEEEeccc--ceehhhhhh
Confidence 999999999999999999999886552 2335889999999988 4 9999999998 99997653 345577777
Q ss_pred cc-eeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 258 RA-CVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 258 ~~-~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
.. .+..++..+... .++|++.|+.+++|++.
T Consensus 257 ~g~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 257 SGKGIWKIAVPIGVI-IKVTGGNDSTLKLWDLN 288 (967)
T ss_pred hhcceeEEEEcCCce-EEEeeccCcchhhhhhh
Confidence 54 789999998887 99999999999999997
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.1e-11 Score=104.42 Aligned_cols=185 Identities=12% Similarity=0.194 Sum_probs=146.2
Q ss_pred CCCeEEEeeCCCcEEEEeCCCccchhhhhc---cCCceeEEEeC---------------------CCcEEEEEcCCCeEE
Q 038533 138 EPKRIGTCSIDTTCTIWDIEKGVVETQLIA---HDKEVYDICWG---------------------EARVFASVSADGSVR 193 (337)
Q Consensus 138 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~~~~v~~~~~~---------------------~~~~l~~~~~dg~i~ 193 (337)
...++|....||.+++||...++....+.. -.+..++..|. +...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 567899999999999999988875544431 12333444442 124688889999999
Q ss_pred EEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCe
Q 038533 194 IFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRH 273 (337)
Q Consensus 194 iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 273 (337)
+|+...++....+... .|.+.+.++.++. +-..|.+++.|.. +..|+... ...+.........+.+++.+||+. .
T Consensus 84 ~ys~~~g~it~~~st~-~h~~~v~~~~~~~-~~~ciyS~~ad~~-v~~~~~~~-~~~~~~~~~~~~~~~sl~is~D~~-~ 158 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTD-KHYGNVNEILDAQ-RLGCIYSVGADLK-VVYILEKE-KVIIRIWKEQKPLVSSLCISPDGK-I 158 (541)
T ss_pred EEEecCCeEEEEEecC-CCCCcceeeeccc-ccCceEecCCcee-EEEEeccc-ceeeeeeccCCCccceEEEcCCCC-E
Confidence 9999999866555444 6889999999987 8889999999998 99999987 666778888888899999999999 9
Q ss_pred EEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccC-----CCceEEEE-cCCcEEEEe
Q 038533 274 ICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPA-----QPDWLAIA-FSNKMQLLK 336 (337)
Q Consensus 274 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~-~d~~i~iw~ 336 (337)
|++++ +.|++||++ + .+....+.+|.++|++++|--. |.+++++. .+..+.+|.
T Consensus 159 l~~as--~~ik~~~~~--~-----kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIE--T-----KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWV 218 (541)
T ss_pred EEecc--ceEEEEEcc--C-----ceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEE
Confidence 99887 689999999 4 2235588899999999999887 66777654 556667775
No 258
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.9e-10 Score=96.45 Aligned_cols=280 Identities=11% Similarity=0.199 Sum_probs=175.1
Q ss_pred ceeeeeCCCceeEEEEe--cceEEEeee-------eccCcceEEEEEecCCCcceecCCCcCCCCCCCC-eEEEecCCCC
Q 038533 14 NSVTHESPYPLYAMAVC--GQRIAVGSF-------IEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPP-TKLMFDPNSS 83 (337)
Q Consensus 14 ~~~~~~~~~~v~~~~~s--~~~la~g~~-------~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~~~~~~ 83 (337)
.+..|.|++ |.-+.|| .+||++=+. +..+...+.|||+..+...-.. .. ......+ .-..||.|++
T Consensus 243 r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF--~~-~~~~~~~WP~frWS~DdK 318 (698)
T KOG2314|consen 243 RIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSF--PV-IKSPYLKWPIFRWSHDDK 318 (698)
T ss_pred HHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcce--ec-cCCCccccceEEeccCCc
Confidence 445566665 8888999 899998765 1223478999998765432221 11 1122222 2468999999
Q ss_pred cccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCC-----CcEEEEeCC
Q 038533 84 SRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSID-----TTCTIWDIE 157 (337)
Q Consensus 84 ~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~v~d~~ 157 (337)
++|.-.. .|.||+...-.+...+.++- ..|....|+| .+++||-=... -.+.+..+.
T Consensus 319 ---------y~Arm~~~sisIyEtpsf~lld~Kslki-------~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evP 381 (698)
T KOG2314|consen 319 ---------YFARMTGNSISIYETPSFMLLDKKSLKI-------SGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVP 381 (698)
T ss_pred ---------eeEEeccceEEEEecCceeeecccccCC-------ccccCcccCC-CcceEEEEcccccCCcceEEEEecC
Confidence 8888765 99999987653322333333 6788999999 66666654321 234555555
Q ss_pred CccchhhhhccCCceeEEEeC-CCcEEEEE----------cCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCC
Q 038533 158 KGVVETQLIAHDKEVYDICWG-EARVFASV----------SADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDL 226 (337)
Q Consensus 158 ~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 226 (337)
+++.+++-..+.-.=..+.|- .|++|+.- +.=..+.|+.++....+...... ...+...+|-| .|
T Consensus 382 s~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel---ke~vi~FaWEP-~g 457 (698)
T KOG2314|consen 382 SKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL---KESVIAFAWEP-HG 457 (698)
T ss_pred ccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec---chheeeeeecc-CC
Confidence 555555444333222234454 56666542 22234778888887766655544 57899999999 77
Q ss_pred cEEEEEEec--CCEEEEEECCC-CCC--CeEEeecccceeeEEEeCCCCCCeEEEE---cCCCcEEEEeCCCCCCCCCCC
Q 038533 227 RYMATILMD--SNKVVILDIRS-PTL--PVAELERHRACVNAIAWAPQSRRHICSV---GDDSQAFIWELPLPPVAGPNG 298 (337)
Q Consensus 227 ~~l~~~~~d--~~~i~i~d~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~i~iw~~~~~~~~~~~~ 298 (337)
+.+++.+.+ ...+.+|-+.+ ... ++..+. ....+.+.|+|.|+ +++.+ |..|.+.++|+.......
T Consensus 458 dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~-fvvva~l~s~~g~l~F~D~~~a~~k~--- 531 (698)
T KOG2314|consen 458 DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGR-FVVVAALVSRRGDLEFYDTDYADLKD--- 531 (698)
T ss_pred CeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCc-EEEEEEecccccceEEEecchhhhhh---
Confidence 766654433 33488998873 222 233333 35678899999999 66655 357899999998422111
Q ss_pred CCceeeeeCCCceeEEEEccCCCceEEEEc
Q 038533 299 IDPMSMYSAGSEINQLQWSPAQPDWLAIAF 328 (337)
Q Consensus 299 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 328 (337)
.... .....+.+.|.|.|++++++++
T Consensus 532 ---~~~~-eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 532 ---TASP-EHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred ---ccCc-cccccccceECCCCCEEEEeee
Confidence 1111 2234688999999999998775
No 259
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=1.5e-09 Score=91.72 Aligned_cols=257 Identities=13% Similarity=0.162 Sum_probs=156.9
Q ss_pred CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe
Q 038533 20 SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS 97 (337)
Q Consensus 20 ~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~ 97 (337)
.......++++ +++|.+.......++.|..|.++.+.+.+...... .........++++|+++ +|+++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~-~~~g~~p~~i~~~~~g~---------~l~va 104 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV-PSGGSSPCHIAVDPDGR---------FLYVA 104 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-EESSSCEEEEEECTTSS---------EEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-ccCCCCcEEEEEecCCC---------EEEEE
Confidence 34556677887 67776665311147899999999875544432222 11334557899999999 66665
Q ss_pred C--C-eEEEEecCCC-CccceeeecCC------CCCcccCCeeEEEeecCCCCeEEEee-CCCcEEEEeCCCccc-h---
Q 038533 98 G--D-FLRLWDVGDS-SIEPVAVLNNS------KSSEFCAPLTSFDWNEIEPKRIGTCS-IDTTCTIWDIEKGVV-E--- 162 (337)
Q Consensus 98 ~--~-~v~vw~~~~~-~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~l~~~~-~dg~i~v~d~~~~~~-~--- 162 (337)
. + .|.++++... .+........| ..........++.|+| +++++++.. ....|.+|++..... +
T Consensus 105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~ 183 (345)
T PF10282_consen 105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPV 183 (345)
T ss_dssp ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEE
T ss_pred EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEe
Confidence 3 3 9999999874 22222111111 0111225678999999 888777764 344799999876541 1
Q ss_pred hhhh-ccCCceeEEEeC-CCcEEE-EEcCCCeEEEEECCCCCC-cee---eec---CCCCCCCceEEEeecCCCcEEEEE
Q 038533 163 TQLI-AHDKEVYDICWG-EARVFA-SVSADGSVRIFDLRDKEH-STI---IYE---SPQPDTPLLRLAWNKQDLRYMATI 232 (337)
Q Consensus 163 ~~~~-~~~~~v~~~~~~-~~~~l~-~~~~dg~i~iwd~~~~~~-~~~---~~~---~~~~~~~i~~~~~~~~~~~~l~~~ 232 (337)
..+. ........++|+ ++++++ +...++.|.++++....- ... +.. ..........+.++| ++++|+++
T Consensus 184 ~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvs 262 (345)
T PF10282_consen 184 DSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVS 262 (345)
T ss_dssp EEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEE
T ss_pred eccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec-CCCEEEEE
Confidence 1111 234557899999 666655 455688899999983221 111 111 111123578899999 99999998
Q ss_pred EecCCEEEEEECCCCCCCeE---EeecccceeeEEEeCCCCCCeEEEE-cCCCcEEEEeCC
Q 038533 233 LMDSNKVVILDIRSPTLPVA---ELERHRACVNAIAWAPQSRRHICSV-GDDSQAFIWELP 289 (337)
Q Consensus 233 ~~d~~~i~i~d~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~ 289 (337)
......|.+|++......+. .+.......+.++++|+|+ +|+++ ..++.|.+|+++
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~-~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGR-YLYVANQDSNTVSVFDID 322 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSS-EEEEEETTTTEEEEEEEE
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCC-EEEEEecCCCeEEEEEEe
Confidence 87777799999953222232 3333334578999999999 55554 577899999886
No 260
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.40 E-value=2.1e-10 Score=97.01 Aligned_cols=186 Identities=15% Similarity=0.178 Sum_probs=125.6
Q ss_pred CCeE-EEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCc
Q 038533 139 PKRI-GTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPL 216 (337)
Q Consensus 139 ~~~l-~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i 216 (337)
++++ ++-..++.|.+.|..+.+.+..+......-..+.++ +++++++++.||.|.++|+.+.+....+... ...
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G----~~~ 80 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG----GNP 80 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S----SEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC----CCc
Confidence 3455 445568999999999999888887554444557788 7999999999999999999999977776554 567
Q ss_pred eEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecc-------cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 217 LRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERH-------RACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 217 ~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
..+++++ +++++++++.....+.++|.++ .++++.+... ...+.++..+|..+.++++--+.+.|.+-|..
T Consensus 81 ~~i~~s~-DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~ 158 (369)
T PF02239_consen 81 RGIAVSP-DGKYVYVANYEPGTVSVIDAET-LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS 158 (369)
T ss_dssp EEEEE---TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred ceEEEcC-CCCEEEEEecCCCceeEecccc-ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence 8899999 9999998887666699999998 5667766533 23567888888887344555555888888877
Q ss_pred CCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEE-cCCcEEEEe
Q 038533 290 LPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIA-FSNKMQLLK 336 (337)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iw~ 336 (337)
.... .............+..|+|++++++++. .++.|-+++
T Consensus 159 --d~~~----~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD 200 (369)
T PF02239_consen 159 --DPKN----LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVID 200 (369)
T ss_dssp --TSSC----EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred --cccc----cceeeecccccccccccCcccceeeecccccceeEEEe
Confidence 3211 1123334556678999999999887765 456676665
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=4.8e-10 Score=97.19 Aligned_cols=215 Identities=12% Similarity=0.129 Sum_probs=124.7
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCe--E-EEeeCCC--cEEEEeCCCccchhhhhccCCceeE
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKR--I-GTCSIDT--TCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--l-~~~~~dg--~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
.|.+.|....+.+ .+.... ..+..-+|+| +++. + ++...+| .|.+.++.+++... +....+....
T Consensus 166 ~l~~~d~dG~~~~---~lt~~~-----~~~~sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~ 235 (428)
T PRK01029 166 ELWSVDYDGQNLR---PLTQEH-----SLSITPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLM 235 (428)
T ss_pred eEEEEcCCCCCce---EcccCC-----CCcccceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccc
Confidence 4556666655322 232222 4566789999 8764 2 2444444 57777888775332 2223444567
Q ss_pred EEeC-CCcEEEEEcC-----CCeEEEEECCCCC--CceeeecCCCCCCCceEEEeecCCCcEEEEEEe-cCC-EEEEEEC
Q 038533 175 ICWG-EARVFASVSA-----DGSVRIFDLRDKE--HSTIIYESPQPDTPLLRLAWNKQDLRYMATILM-DSN-KVVILDI 244 (337)
Q Consensus 175 ~~~~-~~~~l~~~~~-----dg~i~iwd~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~-~i~i~d~ 244 (337)
.+|+ +++.|+..+. +-.+..|++..+. ....+... ........+|+| +++.|+..+. ++. .|+++++
T Consensus 236 p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~--~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~ 312 (428)
T PRK01029 236 PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE--AFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQI 312 (428)
T ss_pred eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC--CCCCcCCeEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 8999 7877776543 2234457776531 22222221 123346789999 9988777664 443 2555555
Q ss_pred CCCCCCeEEeecccceeeEEEeCCCCCCeEEEEc-CC--CcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCC
Q 038533 245 RSPTLPVAELERHRACVNAIAWAPQSRRHICSVG-DD--SQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQP 321 (337)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 321 (337)
...+.....+..+...+....|+|+|+ .|+..+ .+ ..|.+||+..++ ...+......+....|+|||+
T Consensus 313 ~~~g~~~~~lt~~~~~~~~p~wSPDG~-~Laf~~~~~g~~~I~v~dl~~g~--------~~~Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 313 DPEGQSPRLLTKKYRNSSCPAWSPDGK-KIAFCSVIKGVRQICVYDLATGR--------DYQLTTSPENKESPSWAIDSL 383 (428)
T ss_pred cccccceEEeccCCCCccceeECCCCC-EEEEEEcCCCCcEEEEEECCCCC--------eEEccCCCCCccceEECCCCC
Confidence 432223344544455677899999999 665544 33 368899987332 223332334567899999998
Q ss_pred ceEEEEc-C--CcEEEEe
Q 038533 322 DWLAIAF-S--NKMQLLK 336 (337)
Q Consensus 322 ~l~~~~~-d--~~i~iw~ 336 (337)
.|+..+. + ..|.+++
T Consensus 384 ~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 384 HLVYSAGNSNESELYLIS 401 (428)
T ss_pred EEEEEECCCCCceEEEEE
Confidence 8875543 2 4565555
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=1.3e-08 Score=81.50 Aligned_cols=256 Identities=9% Similarity=0.121 Sum_probs=170.1
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.....++-|+|+ +++|.++.. .+++|.|.-|.++...+.+...... ..-..+-..++++++++ +|++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~-~~~~ggvaay~iD~~~G~Lt~ln~~-~~~g~~p~yvsvd~~g~---------~vf~ 105 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNE-PGEEGGVAAYRIDPDDGRLTFLNRQ-TLPGSPPCYVSVDEDGR---------FVFV 105 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEe-cCCcCcEEEEEEcCCCCeEEEeecc-ccCCCCCeEEEECCCCC---------EEEE
Confidence 345667888999 567777665 3448999999999876666542222 12223348899999998 8877
Q ss_pred eC-C--eEEEEecCC-CCccceeeecCCCCC-----cccCCeeEEEeecCCCCeEEEeeC-CCcEEEEeCCCccchh---
Q 038533 97 SG-D--FLRLWDVGD-SSIEPVAVLNNSKSS-----EFCAPLTSFDWNEIEPKRIGTCSI-DTTCTIWDIEKGVVET--- 163 (337)
Q Consensus 97 ~~-~--~v~vw~~~~-~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~l~~~~~-dg~i~v~d~~~~~~~~--- 163 (337)
+. . .|.++.++. +.+.....+..|... ....-+.+..+.| +++++++... --.|.+|++..++...
T Consensus 106 AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~ 184 (346)
T COG2706 106 ANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADP 184 (346)
T ss_pred EEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccc
Confidence 76 3 999999966 433333233333311 1112278889999 9988888863 2369999999776322
Q ss_pred -hhhccCCceeEEEeC-CCcEEEEEc-CCCeEEEEECCCCC-Ccee------eecCCCCCCCceEEEeecCCCcEEEEEE
Q 038533 164 -QLIAHDKEVYDICWG-EARVFASVS-ADGSVRIFDLRDKE-HSTI------IYESPQPDTPLLRLAWNKQDLRYMATIL 233 (337)
Q Consensus 164 -~~~~~~~~v~~~~~~-~~~~l~~~~-~dg~i~iwd~~~~~-~~~~------~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 233 (337)
.+ ........|.|+ ++++..... -+++|.+|...... .... +............+..+| +|++|.++.
T Consensus 185 ~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasN 262 (346)
T COG2706 185 AEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASN 262 (346)
T ss_pred ccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEec
Confidence 22 234456889999 566665544 48999999988741 1111 111222346678899999 999999987
Q ss_pred ecCCEEEEEECCCCCCCeEEe---ecccceeeEEEeCCCCCCeEEEEcCC-CcEEEEeCC
Q 038533 234 MDSNKVVILDIRSPTLPVAEL---ERHRACVNAIAWAPQSRRHICSVGDD-SQAFIWELP 289 (337)
Q Consensus 234 ~d~~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iw~~~ 289 (337)
..-..|.+|.+...+..+... ..+....+.+.++|.++ +|+++..+ ..|.+|..+
T Consensus 263 Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~-~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 263 RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGR-FLIAANQKSDNITVFERD 321 (346)
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCC-EEEEEccCCCcEEEEEEc
Confidence 655569999887654433332 23334478899999999 77666654 579999998
No 263
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.36 E-value=3.1e-10 Score=86.90 Aligned_cols=225 Identities=13% Similarity=0.070 Sum_probs=143.2
Q ss_pred EEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCC
Q 038533 93 LLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDK 170 (337)
Q Consensus 93 ~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~ 170 (337)
+||.|+. ...+|...+.+ ........|. ..|+-+.=.......+..++.|.++++.+++.+..... .|..
T Consensus 86 ~la~gG~~g~fd~~~~~tn~-~h~~~cd~sn-----n~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~--~h~~ 157 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTND-GHLYQCDVSN-----NDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFA--VHNQ 157 (344)
T ss_pred EEEeccccceeeeecccCcc-cceeeecccc-----cchhhhhhhcccccceeeccCCcceeEEEEecCcccce--eecc
Confidence 7777763 99999998775 2333333333 22221110011233566678899999998865543222 2333
Q ss_pred --ceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCc-eeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCC
Q 038533 171 --EVYDICWG-EARVFASVSADGSVRIFDLRDKEHS-TIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRS 246 (337)
Q Consensus 171 --~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~ 246 (337)
.+.+++++ +++++++.+....|..|.+...... ..++.. .....-.+..|+. +...+|++..||. +.|||+|.
T Consensus 158 ~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a-~t~D~gF~~S~s~-~~~~FAv~~Qdg~-~~I~DVR~ 234 (344)
T KOG4532|consen 158 NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEA-PTSDHGFYNSFSE-NDLQFAVVFQDGT-CAIYDVRN 234 (344)
T ss_pred ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEec-ccCCCceeeeecc-CcceEEEEecCCc-EEEEEecc
Confidence 37888999 7999999999999999998765432 222322 2345567888998 8899999999999 99999998
Q ss_pred CCCCeEEe----ecccceeeEEEeCCCCCC-eEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCC-CceeEEEEccCC
Q 038533 247 PTLPVAEL----ERHRACVNAIAWAPQSRR-HICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAG-SEINQLQWSPAQ 320 (337)
Q Consensus 247 ~~~~~~~~----~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~ 320 (337)
.+.|.... ..|.+.++.+.|++.|.. +|+..-.-+.+.+-|++....-+.....+.....|. ..|..-.|+.++
T Consensus 235 ~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 235 MATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred cccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 77665433 458899999999987652 455555567899999993221110000011222233 337777777766
Q ss_pred CceEEEEc
Q 038533 321 PDWLAIAF 328 (337)
Q Consensus 321 ~~l~~~~~ 328 (337)
..+.+..+
T Consensus 315 ~s~~v~~e 322 (344)
T KOG4532|consen 315 ESNDVKNE 322 (344)
T ss_pred cccccccc
Confidence 65554443
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=8.6e-12 Score=117.17 Aligned_cols=186 Identities=15% Similarity=0.234 Sum_probs=142.2
Q ss_pred CCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCC
Q 038533 71 YPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSID 148 (337)
Q Consensus 71 ~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 148 (337)
..|.++.=+|... +..+|+ | .|++|....++ .+..+..-. .+.|+.+.|+. .|+.+..+..|
T Consensus 2209 ~~v~r~~sHp~~~---------~Yltgs~dgsv~~~~w~~~~--~v~~~rt~g----~s~vtr~~f~~-qGnk~~i~d~d 2272 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDP---------YYLTGSQDGSVRMFEWGHGQ--QVVCFRTAG----NSRVTRSRFNH-QGNKFGIVDGD 2272 (2439)
T ss_pred CceeeecCCCCCc---------eEEecCCCceEEEEeccCCC--eEEEeeccC----cchhhhhhhcc-cCCceeeeccC
Confidence 3455555566666 555555 6 99999998874 333332211 17899999997 99999999999
Q ss_pred CcEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEc---CCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCC
Q 038533 149 TTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVS---ADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQD 225 (337)
Q Consensus 149 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 225 (337)
|.+.+|... .++....+.|.....++.|- +..+++++ .++.+.+||.........+. ..|.+..+++++-| .
T Consensus 2273 g~l~l~q~~-pk~~~s~qchnk~~~Df~Fi-~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P-~ 2347 (2439)
T KOG1064|consen 2273 GDLSLWQAS-PKPYTSWQCHNKALSDFRFI-GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP-K 2347 (2439)
T ss_pred CceeecccC-CcceeccccCCccccceeee-ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC-c
Confidence 999999986 56667778898888888887 35666654 47889999987665444444 35889999999999 9
Q ss_pred CcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCC
Q 038533 226 LRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL 290 (337)
Q Consensus 226 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 290 (337)
...|++|+.+|. |++||++. .+.++.++. +. ... ++++|+..|.|+||++..
T Consensus 2348 ~qllisggr~G~-v~l~D~rq-rql~h~~~~---------~~-~~~-~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2348 HQLLISGGRKGE-VCLFDIRQ-RQLRHTFQA---------LD-TRE-YFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred ceEEEecCCcCc-EEEeehHH-HHHHHHhhh---------hh-hhh-eeeccCcccceEEEEccc
Confidence 999999999999 99999997 555555543 44 344 999999999999999993
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=8.3e-10 Score=96.63 Aligned_cols=217 Identities=15% Similarity=0.133 Sum_probs=132.7
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE-
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA- 95 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~- 95 (337)
.+..++...+|+ |+.||..+.. +....|.+|+++....... ....+.+....|+|+++ .|+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~-~~~~~l~~~~l~~g~~~~l------~~~~g~~~~~~~SpDG~---------~la~ 259 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFE-QKRPRIFVQNLDTGRREQI------TNFEGLNGAPAWSPDGS---------KLAF 259 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcC-CCCCEEEEEECCCCCEEEc------cCCCCCcCCeEECCCCC---------EEEE
Confidence 456678899999 8888887641 1134566666654332221 22334456789999998 555
Q ss_pred EeC---C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC-CC--cEEEEeCCCccchhhhhcc
Q 038533 96 SSG---D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI-DT--TCTIWDIEKGVVETQLIAH 168 (337)
Q Consensus 96 ~~~---~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~ 168 (337)
+.. + .|.+||+.+++. ..+..+. .......|+| +++.++..+. +| .|+++|+.+++... +...
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~---~~lt~~~-----~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~ 329 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQL---SRVTNHP-----AIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFV 329 (430)
T ss_pred EEccCCCceEEEEECCCCCe---EEcccCC-----CCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE-eecC
Confidence 433 2 789999988743 2333333 4456678999 8887665553 33 57777887766322 2211
Q ss_pred CCceeEEEeC-CCcEEEEEcCC-C--eEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC--EEEEE
Q 038533 169 DKEVYDICWG-EARVFASVSAD-G--SVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN--KVVIL 242 (337)
Q Consensus 169 ~~~v~~~~~~-~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~--~i~i~ 242 (337)
........|+ +++.++..+.+ + .|.++|+.+++.. .+... .......|+| +++.++..+.++. .|.++
T Consensus 330 ~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~----~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 330 GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT----SLDESPSVAP-NGTMLIYATRQQGRGVLMLV 403 (430)
T ss_pred CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC----CCCCCceECC-CCCEEEEEEecCCceEEEEE
Confidence 2233456888 77888766543 3 5888999887632 22222 1223568999 8888877766542 36666
Q ss_pred ECCCCCCCeEEeecccceeeEEEeCCC
Q 038533 243 DIRSPTLPVAELERHRACVNAIAWAPQ 269 (337)
Q Consensus 243 d~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (337)
++. +.....+..+.+.+...+|+|-
T Consensus 404 ~~~--g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 404 SIN--GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ECC--CCceEECcCCCCCcCCCccCCC
Confidence 764 3334455555566777788874
No 266
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.33 E-value=2.5e-09 Score=88.99 Aligned_cols=285 Identities=15% Similarity=0.163 Sum_probs=175.5
Q ss_pred ceeeeeCCCceeEEEEe--cceEEEeeee-----------ccCcceEEEEEecCCCcceecCCCcCCCCCCCCe-EEEec
Q 038533 14 NSVTHESPYPLYAMAVC--GQRIAVGSFI-----------EDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPT-KLMFD 79 (337)
Q Consensus 14 ~~~~~~~~~~v~~~~~s--~~~la~g~~~-----------~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~ 79 (337)
.+.++.|++ |+-+.|+ +++|.+=... ..+++.+.+||...+...+.. .. .....-.. -+.|+
T Consensus 65 ~l~~~~~~~-V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf--~~-~~q~~~~Wp~~k~s 140 (561)
T COG5354 65 KLVRFRHPD-VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSF--NG-ISQPYLGWPVLKFS 140 (561)
T ss_pred heeeeecCC-ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeec--cc-cCCcccccceeeee
Confidence 455666655 8889999 8999886651 112445888777654433322 11 12222244 67888
Q ss_pred CCCCcccCcCCccEEEEeCC-eEEEEecCCCCc--cceeeecCCCCCcccCCeeEEEeecC-CCCeEEE-----eeCCCc
Q 038533 80 PNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSI--EPVAVLNNSKSSEFCAPLTSFDWNEI-EPKRIGT-----CSIDTT 150 (337)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~-----~~~dg~ 150 (337)
-+.. ++|--.+ .+.|+++ ++.. .+...+.. ..|....|+|. +...|+. .+..+.
T Consensus 141 ~~D~---------y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~-------~gi~dFsisP~~n~~~la~~tPEk~~kpa~ 203 (561)
T COG5354 141 IDDK---------YVARVVGSSLYIHEI-TDNIEEHPFKNLRP-------VGILDFSISPEGNHDELAYWTPEKLNKPAM 203 (561)
T ss_pred ecch---------hhhhhccCeEEEEec-CCccccCchhhccc-------cceeeEEecCCCCCceEEEEccccCCCCcE
Confidence 8887 6665444 9999997 4322 22233332 56889999984 2334443 356788
Q ss_pred EEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEc-----------CCCeEEEEECCCCCCceeeecCCCCCCCceE
Q 038533 151 CTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVS-----------ADGSVRIFDLRDKEHSTIIYESPQPDTPLLR 218 (337)
Q Consensus 151 i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~ 218 (337)
+++|.+..+..+.+-.-....-..+.|+ .+++++.-- ....+.+++++........ ...++|..
T Consensus 204 ~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~----~~~~pVhd 279 (561)
T COG5354 204 VRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK----DLKDPVHD 279 (561)
T ss_pred EEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec----ccccccee
Confidence 9999987666544332222233456777 566544321 1356889999865544333 23589999
Q ss_pred EEeecCCCcEEEEEE-ecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCC---CcEEEEeCCCCCCC
Q 038533 219 LAWNKQDLRYMATIL-MDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDD---SQAFIWELPLPPVA 294 (337)
Q Consensus 219 ~~~~~~~~~~l~~~~-~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~iw~~~~~~~~ 294 (337)
.+|.| .++.+++.+ .....+.++|++. .....+ ....=+.+.|+|.++ +++.++-| |.+.+||.. .
T Consensus 280 f~W~p-~S~~F~vi~g~~pa~~s~~~lr~--Nl~~~~--Pe~~rNT~~fsp~~r-~il~agF~nl~gni~i~~~~--~-- 349 (561)
T COG5354 280 FTWEP-LSSRFAVISGYMPASVSVFDLRG--NLRFYF--PEQKRNTIFFSPHER-YILFAGFDNLQGNIEIFDPA--G-- 349 (561)
T ss_pred eeecc-cCCceeEEecccccceeeccccc--ceEEec--CCcccccccccCccc-EEEEecCCccccceEEeccC--C--
Confidence 99999 666555544 3333499999986 233333 334557789999999 77766644 689999988 2
Q ss_pred CCCCCCceeeeeCCCceeEEEEccCCCceEEEE------cCCcEEEEeC
Q 038533 295 GPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIA------FSNKMQLLKV 337 (337)
Q Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~iw~l 337 (337)
.......-......-+.|+|+++++.+.. .|+.+.||++
T Consensus 350 ----rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 350 ----RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred ----ceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 11111111223345578999998777643 3789999986
No 267
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=7.9e-12 Score=117.41 Aligned_cols=185 Identities=12% Similarity=0.174 Sum_probs=142.0
Q ss_pred CCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh-ccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCce
Q 038533 127 APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI-AHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHST 204 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 204 (337)
..|.++.-+| ...+.++|+.||.+++|.-..++.+..+. .....|+.+.|+ .|+.+..+..||.+.+|... .+
T Consensus 2209 ~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~----pk 2283 (2439)
T KOG1064|consen 2209 ENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS----PK 2283 (2439)
T ss_pred CceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC----Cc
Confidence 4577788788 77899999999999999988887666554 234789999999 89999999999999999987 22
Q ss_pred eeecCCCCCCCceEEEeecCCCcEEEEEEe--cCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCc
Q 038533 205 IIYESPQPDTPLLRLAWNKQDLRYMATILM--DSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQ 282 (337)
Q Consensus 205 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 282 (337)
.......|+.....+.|-. ..+++++. |+..+.+||...+...-.....|.+.++++++-|..+ +|++|+.+|.
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~q-llisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQ-LLISGGRKGE 2359 (2439)
T ss_pred ceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcce-EEEecCCcCc
Confidence 3344445788888888853 56666542 3334999998765543334478999999999999998 9999999999
Q ss_pred EEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 283 AFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 283 i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
|++||++..++. |.-+. +. ...++++++..|.++||++
T Consensus 2360 v~l~D~rqrql~------------h~~~~----~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLR------------HTFQA----LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred EEEeehHHHHHH------------HHhhh----hh-hhheeeccCcccceEEEEc
Confidence 999999922211 22222 44 4557888899999999986
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=7e-10 Score=96.92 Aligned_cols=216 Identities=17% Similarity=0.160 Sum_probs=128.2
Q ss_pred CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE-
Q 038533 20 SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS- 96 (337)
Q Consensus 20 ~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~- 96 (337)
...++.+.+|+ |+.|+..+.. +....|.+|++.. +.... + ....+......|+|+++ .|+.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~-~g~~~L~~~dl~t--g~~~~---l-t~~~g~~~~~~wSPDG~---------~La~~ 279 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFE-NRKAEIFVQDIYT--QVREK---V-TSFPGINGAPRFSPDGK---------KLALV 279 (448)
T ss_pred CCCcccCceECCCCCEEEEEEec-CCCcEEEEEECCC--CCeEE---e-cCCCCCcCCeeECCCCC---------EEEEE
Confidence 35567889999 8888887641 1123455555443 33222 0 12233345789999998 5554
Q ss_pred eC-C---eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC-CC--cEEEEeCCCccchhhhhccC
Q 038533 97 SG-D---FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI-DT--TCTIWDIEKGVVETQLIAHD 169 (337)
Q Consensus 97 ~~-~---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~ 169 (337)
.+ + .|.++|+.+++. ..+..+. ......+|+| +++.++..+. ++ .|.++|+.+++... +....
T Consensus 280 ~~~~g~~~Iy~~dl~tg~~---~~lt~~~-----~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g 349 (448)
T PRK04792 280 LSKDGQPEIYVVDIATKAL---TRITRHR-----AIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEG 349 (448)
T ss_pred EeCCCCeEEEEEECCCCCe---EECccCC-----CCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCC
Confidence 33 2 688889988742 2333333 4456789999 8887766543 34 46666777665332 22122
Q ss_pred CceeEEEeC-CCcEEEEEcC-CC--eEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC--EEEEEE
Q 038533 170 KEVYDICWG-EARVFASVSA-DG--SVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN--KVVILD 243 (337)
Q Consensus 170 ~~v~~~~~~-~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~--~i~i~d 243 (337)
......+|+ ++++++..+. ++ .|.++|+.+++.. .+... .......|+| +++.|+....++. .+++++
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~----~~d~~ps~sp-dG~~I~~~~~~~g~~~l~~~~ 423 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST----RLDESPSVAP-NGTMVIYSTTYQGKQVLAAVS 423 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC----CCCCCceECC-CCCEEEEEEecCCceEEEEEE
Confidence 233456889 7777776654 33 4566788776532 22211 1223457999 8888777665543 366777
Q ss_pred CCCCCCCeEEeecccceeeEEEeCCC
Q 038533 244 IRSPTLPVAELERHRACVNAIAWAPQ 269 (337)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~~~~~ 269 (337)
.. +.....+..+.+.+...+|+|-
T Consensus 424 ~~--G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 424 ID--GRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CC--CCceEECcCCCCCcCCCccCCC
Confidence 64 4445666655667788888873
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.32 E-value=1.3e-10 Score=100.51 Aligned_cols=233 Identities=15% Similarity=0.259 Sum_probs=166.1
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCC-------------ccceeeecCCCCCcccCCeeE
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSS-------------IEPVAVLNNSKSSEFCAPLTS 131 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~-------------~~~~~~~~~~~~~~~~~~i~~ 131 (337)
.+......|++|+.... ++|+|+ | .++|..+.+.. +...+++.+|. ..|.-
T Consensus 11 iPnnvkL~c~~WNke~g---------yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~-----~sV~v 76 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESG---------YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHN-----ASVMV 76 (1189)
T ss_pred CCCCceEEEEEEcccCC---------eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCc-----ceEEE
Confidence 45566789999999988 999988 5 88888876532 23345677777 99999
Q ss_pred EEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh--ccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeec
Q 038533 132 FDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI--AHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYE 208 (337)
Q Consensus 132 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 208 (337)
+.|+. +.+.|-+...+|.|.+|-+-.+.-...+. ...+.|.+++|+ +|..+..+-.||.|.+=.+...+.-..-.
T Consensus 77 vTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeL- 154 (1189)
T KOG2041|consen 77 VTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKEL- 154 (1189)
T ss_pred EEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhc-
Confidence 99997 88899999999999999998887544433 345678999999 99999999999999887776654211111
Q ss_pred CCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCC------CeEE----eecccceeeEEEeC--------CCC
Q 038533 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTL------PVAE----LERHRACVNAIAWA--------PQS 270 (337)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~------~~~~----~~~~~~~v~~~~~~--------~~~ 270 (337)
.......+.|++ +...++.+-.+|. +.+||...... +.-. +......|..+.|. |+.
T Consensus 155 ---kg~~l~hv~ws~-D~~~~Lf~~ange-~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 155 ---KGQLLAHVLWSE-DLEQALFKKANGE-THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred ---chheccceeecc-cHHHHHhhhcCCc-EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 123456789999 7777777777787 99999764211 1000 11111235555553 577
Q ss_pred CCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcC
Q 038533 271 RRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFS 329 (337)
Q Consensus 271 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 329 (337)
+ .|+.+-..|.+.|-.-. .. ..| ......-.|....|+++|..|+.++.+
T Consensus 230 P-~lavcy~nGr~QiMR~e--ND-----~~P-vv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 230 P-RLAVCYANGRMQIMRSE--ND-----PEP-VVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred C-EEEEEEcCceehhhhhc--CC-----CCC-eEEecccEeecceecCCCcEEEEccCc
Confidence 7 99999999998886555 21 123 334445789999999999877777654
No 270
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.31 E-value=2.6e-09 Score=88.30 Aligned_cols=217 Identities=12% Similarity=0.083 Sum_probs=147.5
Q ss_pred cEEEEeCCeEEEEecCCCCccceeee-cCC---CCCcccCCeeEEE-eecCCCCeEEEeeCCCcEEEEeCCCccchhhhh
Q 038533 92 HLLASSGDFLRLWDVGDSSIEPVAVL-NNS---KSSEFCAPLTSFD-WNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI 166 (337)
Q Consensus 92 ~~l~~~~~~v~vw~~~~~~~~~~~~~-~~~---~~~~~~~~i~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 166 (337)
.++...++.|.+||..+.+++.+..- .-. +...+..+..-+. |++.++++++..+. |...+.+...+-.+..
T Consensus 280 rIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv-- 356 (668)
T COG4946 280 RIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV-- 356 (668)
T ss_pred EEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc--
Confidence 45556666999999988754332211 111 1111112333333 66668999999886 7788877655543332
Q ss_pred ccCCceeEEEeC-CCcEEEEEcCCC-eEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEEC
Q 038533 167 AHDKEVYDICWG-EARVFASVSADG-SVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI 244 (337)
Q Consensus 167 ~~~~~v~~~~~~-~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~ 244 (337)
++...|.-..+. +++-++.|..|| .+-++|.++++...... .-+.|.++..+| +|++++++..... |.+.|+
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~----~lg~I~av~vs~-dGK~~vvaNdr~e-l~vidi 430 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK----DLGNIEAVKVSP-DGKKVVVANDRFE-LWVIDI 430 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC----CccceEEEEEcC-CCcEEEEEcCceE-EEEEEe
Confidence 466778888888 777899999999 89999999987444432 237899999999 9999998877766 999999
Q ss_pred CCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCC----cEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCC
Q 038533 245 RSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDS----QAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQ 320 (337)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 320 (337)
.+ +.+...-+...+-|+.+.|+|+++ ++|-+--+| .|+++|+..++ ..........=.+-+|.|++
T Consensus 431 dn-gnv~~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~K--------iy~vTT~ta~DfsPaFD~d~ 500 (668)
T COG4946 431 DN-GNVRLIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGK--------IYDVTTPTAYDFSPAFDPDG 500 (668)
T ss_pred cC-CCeeEecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCe--------EEEecCCcccccCcccCCCC
Confidence 98 443333344567899999999999 888887665 68999998322 23222222333455788888
Q ss_pred CceEEEE
Q 038533 321 PDWLAIA 327 (337)
Q Consensus 321 ~~l~~~~ 327 (337)
++|.--+
T Consensus 501 ryLYfLs 507 (668)
T COG4946 501 RYLYFLS 507 (668)
T ss_pred cEEEEEe
Confidence 8776433
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.31 E-value=5.1e-09 Score=86.60 Aligned_cols=168 Identities=15% Similarity=0.149 Sum_probs=124.9
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C--eEEEEecC
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D--FLRLWDVG 107 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~--~v~vw~~~ 107 (337)
|+++|..+ .|...| .+...+.... .+|...|.-..+..+.. -++.|. | .+-|+|..
T Consensus 332 Gd~ia~VS-----RGkaFi--~~~~~~~~iq-----v~~~~~VrY~r~~~~~e---------~~vigt~dgD~l~iyd~~ 390 (668)
T COG4946 332 GDYIALVS-----RGKAFI--MRPWDGYSIQ-----VGKKGGVRYRRIQVDPE---------GDVIGTNDGDKLGIYDKD 390 (668)
T ss_pred CcEEEEEe-----cCcEEE--ECCCCCeeEE-----cCCCCceEEEEEccCCc---------ceEEeccCCceEEEEecC
Confidence 99999999 788888 4433333332 68888899888888776 555554 3 99999999
Q ss_pred CCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEE
Q 038533 108 DSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASV 186 (337)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 186 (337)
+++ .+.+...- +.|.++..++ +++.++++.....|.+.|+.++.....-+...+-|+.+.|+ +++++|.+
T Consensus 391 ~~e---~kr~e~~l-----g~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYa 461 (668)
T COG4946 391 GGE---VKRIEKDL-----GNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYA 461 (668)
T ss_pred Cce---EEEeeCCc-----cceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEe
Confidence 983 23333333 7899999999 99999999999999999999998654444556789999999 78899988
Q ss_pred cCCC----eEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEE
Q 038533 187 SADG----SVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATIL 233 (337)
Q Consensus 187 ~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 233 (337)
--+| .|+++|+..++......+ ...=.+-+|.| ++++|..-+
T Consensus 462 fP~gy~tq~Iklydm~~~Kiy~vTT~----ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 462 FPEGYYTQSIKLYDMDGGKIYDVTTP----TAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred cCcceeeeeEEEEecCCCeEEEecCC----cccccCcccCC-CCcEEEEEe
Confidence 7766 589999998874433322 23345667887 787776544
No 272
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.31 E-value=5.4e-09 Score=98.05 Aligned_cols=294 Identities=16% Similarity=0.256 Sum_probs=180.3
Q ss_pred CCceeEEEEe--cceEEEeeeeccCcceEEEEEecC--CCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 21 PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEP--ESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 21 ~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~--~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
.+.|.++.|- ...|+++.. +|.|.+...+. .....+. ...-...|.+++||||.. +||.
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~----~Gdi~~~~~~~~~~~~~~E~----VG~vd~GI~a~~WSPD~E---------lla~ 137 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALA----SGDIILVREDPDPDEDEIEI----VGSVDSGILAASWSPDEE---------LLAL 137 (928)
T ss_pred CCcEEEEEeccCCCcEEEEEC----CceEEEEEccCCCCCceeEE----EEEEcCcEEEEEECCCcC---------EEEE
Confidence 3578888887 566777775 89999874432 2223332 134567899999999998 7666
Q ss_pred eC--CeEEEEecC----------C---CCc--------cceeeecCCCCC----------------c---ccCCeeEEEe
Q 038533 97 SG--DFLRLWDVG----------D---SSI--------EPVAVLNNSKSS----------------E---FCAPLTSFDW 134 (337)
Q Consensus 97 ~~--~~v~vw~~~----------~---~~~--------~~~~~~~~~~~~----------------~---~~~~i~~~~~ 134 (337)
.. +++.+.+-. . ++. +....|+|.... + ....-..++|
T Consensus 138 vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISW 217 (928)
T PF04762_consen 138 VTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISW 217 (928)
T ss_pred EeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEE
Confidence 54 355544321 0 000 011111111000 0 1234557899
Q ss_pred ecCCCCeEEEeeC---C---CcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcC---CCeEEEEECCCCCCce
Q 038533 135 NEIEPKRIGTCSI---D---TTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSA---DGSVRIFDLRDKEHST 204 (337)
Q Consensus 135 ~~~~~~~l~~~~~---d---g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~---dg~i~iwd~~~~~~~~ 204 (337)
-. ||.++|+.+- . ..++||+-+ |....+...-.+--.+++|- .|+++|+.-. ...|.+|.-+..+...
T Consensus 218 RG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge 295 (928)
T PF04762_consen 218 RG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE 295 (928)
T ss_pred CC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee
Confidence 87 9999999874 2 479999954 65443333333334578898 5888887654 3457777765555444
Q ss_pred eeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCC-eEEeecc-cceeeEEEeCCCCCCeEEEEcCCCc
Q 038533 205 IIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLP-VAELERH-RACVNAIAWAPQSRRHICSVGDDSQ 282 (337)
Q Consensus 205 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~-~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~ 282 (337)
...........+..+.|++ ++..|++.-.+. |.+|-..+..-- .+.+... ...+..+.|+|..+..|...+.+|.
T Consensus 296 F~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~ 372 (928)
T PF04762_consen 296 FTLRFDPEEEKVIELAWNS-DSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQ 372 (928)
T ss_pred EecCCCCCCceeeEEEECC-CCCEEEEEecCC--ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCc
Confidence 4433323557899999999 999999977554 999988774322 2223211 2345569999988867877777677
Q ss_pred EEEEeC----CCCCCCCCC---------CCC-------------ce--eeeeCCCceeEEEEccCCCceEEEEcCCcEEE
Q 038533 283 AFIWEL----PLPPVAGPN---------GID-------------PM--SMYSAGSEINQLQWSPAQPDWLAIAFSNKMQL 334 (337)
Q Consensus 283 i~iw~~----~~~~~~~~~---------~~~-------------~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i 334 (337)
+..+++ ..+....+. |.. |. .......+|.+++|++++..+++...||.+.+
T Consensus 373 ~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~ 452 (928)
T PF04762_consen 373 YEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSI 452 (928)
T ss_pred EEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEE
Confidence 665444 222111110 000 11 11124578999999999877888899999999
Q ss_pred Ee
Q 038533 335 LK 336 (337)
Q Consensus 335 w~ 336 (337)
|.
T Consensus 453 ~~ 454 (928)
T PF04762_consen 453 YE 454 (928)
T ss_pred EE
Confidence 86
No 273
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.30 E-value=1.2e-09 Score=95.35 Aligned_cols=235 Identities=13% Similarity=0.210 Sum_probs=170.2
Q ss_pred CCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCC-----------C
Q 038533 72 PPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIE-----------P 139 (337)
Q Consensus 72 ~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------~ 139 (337)
.-.++.|+|.| ++|-|+. .|.+-|..+- +.++.+..|+ ..|+.+.|.|.. .
T Consensus 17 N~~A~Dw~~~G----------LiAygshslV~VVDs~s~--q~iqsie~h~-----s~V~~VrWap~~~p~~llS~~~~~ 79 (1062)
T KOG1912|consen 17 NRNAADWSPSG----------LIAYGSHSLVSVVDSRSL--QLIQSIELHQ-----SAVTSVRWAPAPSPRDLLSPSSSQ 79 (1062)
T ss_pred cccccccCccc----------eEEEecCceEEEEehhhh--hhhhccccCc-----cceeEEEeccCCCchhccCccccc
Confidence 36788999988 8899887 9999998887 6888888888 999999998821 1
Q ss_pred CeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC---C-C-cEEEEEcCCCeEEEEECCCCCCceeeecCCCCCC
Q 038533 140 KRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG---E-A-RVFASVSADGSVRIFDLRDKEHSTIIYESPQPDT 214 (337)
Q Consensus 140 ~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~---~-~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 214 (337)
-+||++...|.|.+||...+..+..+..|..++..++|- + . ..|+.-....++.+|+..+++. +........
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k---~Wk~~ys~~ 156 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK---FWKYDYSHE 156 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce---eeccccCCc
Confidence 268888899999999999999889999999999999998 2 2 5677778888999999999984 333323346
Q ss_pred CceEEEeecCCCcEEEEEEecCCEEEEEECCCCC---CCeEEe---ecccc-------------------------eeeE
Q 038533 215 PLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT---LPVAEL---ERHRA-------------------------CVNA 263 (337)
Q Consensus 215 ~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~---~~~~~~---~~~~~-------------------------~v~~ 263 (337)
...|+.+.|.+.+.+..-+..|. +.+-+.-... .+.+.+ ..|.. ....
T Consensus 157 iLs~f~~DPfd~rh~~~l~s~g~-vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~ 235 (1062)
T KOG1912|consen 157 ILSCFRVDPFDSRHFCVLGSKGF-VLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQ 235 (1062)
T ss_pred ceeeeeeCCCCcceEEEEccCce-EEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHh
Confidence 77889999999999888888887 6666543211 111221 12211 1124
Q ss_pred EEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCce-eeeeCCCceeEEEEccCC--CceEEEEcCCcEEEEe
Q 038533 264 IAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPM-SMYSAGSEINQLQWSPAQ--PDWLAIAFSNKMQLLK 336 (337)
Q Consensus 264 ~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~iw~ 336 (337)
++|+|.-++ ++-......+.++|++... +. ...-..+.+.-+.|-|+. ..|++.-.||.+.+|.
T Consensus 236 faf~p~~rn-~lfi~~prellv~dle~~~--------~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 236 FAFSPHWRN-ILFITFPRELLVFDLEYEC--------CLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred hhcChhhhc-eEEEEeccceEEEcchhhc--------eeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 678888773 3344456779999998221 22 333344555566777765 4588888999999985
No 274
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.28 E-value=1.4e-09 Score=83.32 Aligned_cols=202 Identities=7% Similarity=-0.016 Sum_probs=136.0
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeec----CCCCeEEEeeCCCcEEEEeCCCccc-hhhhhccCCceeE
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNE----IEPKRIGTCSIDTTCTIWDIEKGVV-ETQLIAHDKEVYD 174 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~dg~i~v~d~~~~~~-~~~~~~~~~~v~~ 174 (337)
.+-+|++-+.....+...++ +.|-| ....+|+.|+..|...+|...+.+. +.....|...|+-
T Consensus 53 sv~i~~~y~N~~~iv~~y~g------------~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~ 120 (344)
T KOG4532|consen 53 SVPINSHYSNPKGIVEFYTG------------MTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTL 120 (344)
T ss_pred eeEeccccCCchhhEEeeec------------ccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhh
Confidence 67778877663223333332 33433 1456899999999999999986653 2222333333322
Q ss_pred EEeC--CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeE
Q 038533 175 ICWG--EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVA 252 (337)
Q Consensus 175 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~ 252 (337)
+.=. ..-.+..++.|.++++.++............ +-...++++++ +++++++.+.... |..|.+......+.
T Consensus 121 ~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~---~~~~ns~~~sn-d~~~~~~Vgds~~-Vf~y~id~~sey~~ 195 (344)
T KOG4532|consen 121 VKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQ---NLTQNSLHYSN-DPSWGSSVGDSRR-VFRYAIDDESEYIE 195 (344)
T ss_pred hhhhcccccceeeccCCcceeEEEEecCcccceeecc---ccceeeeEEcC-CCceEEEecCCCc-ceEEEeCCccceee
Confidence 2211 1335667788889998888766543333221 13478899999 9999999998887 99999886554332
Q ss_pred E--eecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCC
Q 038533 253 E--LERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQP 321 (337)
Q Consensus 253 ~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 321 (337)
. .......-.+..|+.... .+|++..||.+.|||++ ....|..........|.+.+..+.|+|.|.
T Consensus 196 ~~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR--~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 196 NIYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVR--NMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred eeEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEec--ccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 2 223334456788999888 99999999999999999 666555444445556899999999998765
No 275
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.5e-09 Score=89.99 Aligned_cols=229 Identities=17% Similarity=0.274 Sum_probs=151.3
Q ss_pred eEEEEe-cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEe-----C
Q 038533 25 YAMAVC-GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASS-----G 98 (337)
Q Consensus 25 ~~~~~s-~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~-----~ 98 (337)
.+..|+ ...|++--. .+.+++|+......... .-|...|..+.++|... +..+|+- |
T Consensus 129 W~~qfs~dEsl~arlv----~nev~f~~~~~f~~~~~------kl~~~~i~~f~lSpgp~-------~~~vAvyvPe~kG 191 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLV----SNEVQFYDLGSFKTIQH------KLSVSGITMLSLSPGPE-------PPFVAVYVPEKKG 191 (566)
T ss_pred cccccccchhhhhhhh----cceEEEEecCCccceee------eeeccceeeEEecCCCC-------CceEEEEccCCCC
Confidence 577777 555555443 78899998877443333 34678899999999843 2466652 2
Q ss_pred -C-eEEEEecCCCCc---cceeeecCCCCCcccCCeeEEEeecCCCCeEEEee--CC---------CcEEEEeCCCccch
Q 038533 99 -D-FLRLWDVGDSSI---EPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS--ID---------TTCTIWDIEKGVVE 162 (337)
Q Consensus 99 -~-~v~vw~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~d---------g~i~v~d~~~~~~~ 162 (337)
- .|+||....... ...+.|-. ..=..+.|++....+|+.++ -| .++++.+++.....
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFk-------adkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~ 264 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFK-------ADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS 264 (566)
T ss_pred CCcEEEEeccccccccchhhhccccc-------cceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE
Confidence 2 999999873311 11122211 22235788873333443333 22 36888888733333
Q ss_pred hhhhccCCceeEEEeC-CCcEEE--EEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecC--C
Q 038533 163 TQLIAHDKEVYDICWG-EARVFA--SVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDS--N 237 (337)
Q Consensus 163 ~~~~~~~~~v~~~~~~-~~~~l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~ 237 (337)
..+. ..++|.++.|+ .+.-|+ .|-.-..+.+||++..- ++.. ..++-+++-|+| .|++++.++.++ +
T Consensus 265 V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~----v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 265 VPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP----VFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPG 336 (566)
T ss_pred EecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE----eEeC--CCCCccceEECC-CCCEEEEeecCCCCC
Confidence 3333 47899999999 665554 45567789999998653 2222 346778999999 999999888653 1
Q ss_pred EEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcC------CCcEEEEeCC
Q 038533 238 KVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGD------DSQAFIWELP 289 (337)
Q Consensus 238 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~iw~~~ 289 (337)
.+.+||..+ .+.+..+..- .-+-+.|+|+|+ +++|++. |+.++||+..
T Consensus 337 ~mEvwDv~n-~K~i~~~~a~--~tt~~eW~PdGe-~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 337 DMEVWDVPN-RKLIAKFKAA--NTTVFEWSPDGE-YFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ceEEEeccc-hhhccccccC--CceEEEEcCCCc-EEEEEeccccEEecCCeEEEEec
Confidence 399999998 6667777653 345689999999 7777763 7889999998
No 276
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.26 E-value=1.5e-08 Score=78.86 Aligned_cols=229 Identities=12% Similarity=0.115 Sum_probs=132.5
Q ss_pred EEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEE
Q 038533 75 KLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTI 153 (337)
Q Consensus 75 ~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v 153 (337)
.++.+++|+ +||.--| .|.|-..++.=...+...+-.++. ...-..++||| ++.+||.+...|+|++
T Consensus 2 ~~~~~~~Gk---------~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~--~PQWRkl~WSp-D~tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 2 HLALSSDGK---------LLAILQDQCIEIRSAKDDFSSIIGKCQVPKDP--NPQWRKLAWSP-DCTLLAYAESTGTIRV 69 (282)
T ss_pred ceeecCCCc---------EEEEEeccEEEEEeccCCchheeEEEecCCCC--CchheEEEECC-CCcEEEEEcCCCeEEE
Confidence 356677888 9999888 676666554321222222222211 14567899999 9999999999999999
Q ss_pred EeCCCccchhhhhc-------cCCceeEEEeCC-------CcEEEEEcCCCeEEEEECCCC-----CCceeeecCCCCCC
Q 038533 154 WDIEKGVVETQLIA-------HDKEVYDICWGE-------ARVFASVSADGSVRIFDLRDK-----EHSTIIYESPQPDT 214 (337)
Q Consensus 154 ~d~~~~~~~~~~~~-------~~~~v~~~~~~~-------~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~ 214 (337)
+|+.... +..+.. -...|..+.|.+ ...|++-..+|.++-|-+..+ +....+........
T Consensus 70 fdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~ 148 (282)
T PF15492_consen 70 FDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPH 148 (282)
T ss_pred Eecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCC
Confidence 9996533 323221 124566676762 225777778888887775322 12222222334567
Q ss_pred CceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEE-EEcCCCc------EEEEe
Q 038533 215 PLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHIC-SVGDDSQ------AFIWE 287 (337)
Q Consensus 215 ~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~------i~iw~ 287 (337)
.|.++.++| .-++|++|+.....-.. -.+....+++-..-.+.+++.. +...|+. ..+|.
T Consensus 149 Gi~~~vy~p-~h~LLlVgG~~~~~~~~------------s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~ 215 (282)
T PF15492_consen 149 GINSAVYHP-KHRLLLVGGCEQNQDGM------------SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLR 215 (282)
T ss_pred ceeEEEEcC-CCCEEEEeccCCCCCcc------------ccccccCceEEEEcCCCCcEEEccccCccccccccccceee
Confidence 899999999 66777776654330000 0011223333333333332221 2222211 12333
Q ss_pred CCCCCCCCCCCCCce-eeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 288 LPLPPVAGPNGIDPM-SMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 288 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
+. ... .. ........|..|..||||..|++...+|.|.+|+|
T Consensus 216 ~~--~~~------~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 216 IP--SFK------FFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred cc--cee------eeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 22 100 11 11224567999999999999999999999999986
No 277
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.24 E-value=1.1e-07 Score=78.93 Aligned_cols=258 Identities=12% Similarity=0.117 Sum_probs=148.2
Q ss_pred ceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC---------C--eEEEEecCCCCccc
Q 038533 45 NRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG---------D--FLRLWDVGDSSIEP 113 (337)
Q Consensus 45 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~---------~--~v~vw~~~~~~~~~ 113 (337)
++|.+.|.+. .+... .+..+ ..-..+ ++||++ .+.++.+ + .|.+||..+. +.
T Consensus 27 ~~v~ViD~~~--~~v~g--~i~~G--~~P~~~-~spDg~--------~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~ 89 (352)
T TIGR02658 27 TQVYTIDGEA--GRVLG--MTDGG--FLPNPV-VASDGS--------FFAHASTVYSRIARGKRTDYVEVIDPQTH--LP 89 (352)
T ss_pred ceEEEEECCC--CEEEE--EEEcc--CCCcee-ECCCCC--------EEEEEeccccccccCCCCCEEEEEECccC--cE
Confidence 6788855544 33322 11122 223344 999998 4555555 3 9999999998 45
Q ss_pred eeeecCCCCCc--ccCCeeEEEeecCCCCeEEEee-C-CCcEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCC
Q 038533 114 VAVLNNSKSSE--FCAPLTSFDWNEIEPKRIGTCS-I-DTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSAD 189 (337)
Q Consensus 114 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~~l~~~~-~-dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 189 (337)
...+.-...+. .......++++| +++++++.. . +..|.+.|+.+++.+..+.- .+...-...++.. +..-+.|
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p~~~~vy~t~e~~-~~~~~~D 166 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-PDCYHIFPTANDT-FFMHCRD 166 (352)
T ss_pred EeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-CCCcEEEEecCCc-cEEEeec
Confidence 55554322111 002234688998 999888776 3 68999999999998877663 2222222232222 2233445
Q ss_pred CeEEEEECCCCCCceee----ecC---CCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCC----CCeEEeec--
Q 038533 190 GSVRIFDLRDKEHSTII----YES---PQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT----LPVAELER-- 256 (337)
Q Consensus 190 g~i~iwd~~~~~~~~~~----~~~---~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~----~~~~~~~~-- 256 (337)
|......+......... +.. +-...+ .|.+.++.++.+... |. |++.|+.... .++..+..
T Consensus 167 g~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~-V~~id~~~~~~~~~~~~~~~~~~~ 240 (352)
T TIGR02658 167 GSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GK-IFQIDLSSGDAKFLPAIEAFTEAE 240 (352)
T ss_pred CceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-Ce-EEEEecCCCcceecceeeeccccc
Confidence 55554444332211110 000 000112 345547777777666 77 9999965422 22222211
Q ss_pred -----ccceeeEEEeCCCCCCeEEEEc----------CCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCC
Q 038533 257 -----HRACVNAIAWAPQSRRHICSVG----------DDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQP 321 (337)
Q Consensus 257 -----~~~~v~~~~~~~~~~~~l~~~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 321 (337)
..+...-++++|+++ .++... ..+.|.++|.. +. +......-...+..++++||++
T Consensus 241 ~~~~wrP~g~q~ia~~~dg~-~lyV~~~~~~~~thk~~~~~V~ViD~~--t~------kvi~~i~vG~~~~~iavS~Dgk 311 (352)
T TIGR02658 241 KADGWRPGGWQQVAYHRARD-RIYLLADQRAKWTHKTASRFLFVVDAK--TG------KRLRKIELGHEIDSINVSQDAK 311 (352)
T ss_pred cccccCCCcceeEEEcCCCC-EEEEEecCCccccccCCCCEEEEEECC--CC------eEEEEEeCCCceeeEEECCCCC
Confidence 123344599999998 555532 22579999988 31 1333333456899999999998
Q ss_pred -ceEEEE-cCCcEEEEeC
Q 038533 322 -DWLAIA-FSNKMQLLKV 337 (337)
Q Consensus 322 -~l~~~~-~d~~i~iw~l 337 (337)
.|+++. .++.|.+.|+
T Consensus 312 p~lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 312 PLLYALSTGDKTLYIFDA 329 (352)
T ss_pred eEEEEeCCCCCcEEEEEC
Confidence 777666 5788988874
No 278
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.23 E-value=3.3e-10 Score=86.32 Aligned_cols=148 Identities=14% Similarity=0.184 Sum_probs=100.7
Q ss_pred CCCeEEEeeCCCcEEEEeCCCccch-hhhhccCCceeEEEeC-CCcEEEEEc-----CCCeEEEEECCCCCCceeeecCC
Q 038533 138 EPKRIGTCSIDTTCTIWDIEKGVVE-TQLIAHDKEVYDICWG-EARVFASVS-----ADGSVRIFDLRDKEHSTIIYESP 210 (337)
Q Consensus 138 ~~~~l~~~~~dg~i~v~d~~~~~~~-~~~~~~~~~v~~~~~~-~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~ 210 (337)
.++.++++..||.+.+++.+.-..+ ..+..-...-.+.+.. .++.+.++. .-+..+.|+++..+.... ..
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~---~~ 176 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP---SK 176 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccc---cc
Confidence 5678999999999999997652111 1111111111122222 234443332 123456677765542211 11
Q ss_pred CCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 211 QPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
.....+.+++-+|...+.+++|+.+|. +-+||.|+...|...+..|+.+++.+-|+|..+..|+++++||.+..||..
T Consensus 177 ~~~~~v~~l~~hp~qq~~v~cgt~dg~-~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 177 KALDAVTALCSHPAQQHLVCCGTDDGI-VGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cccccchhhhCCcccccEEEEecCCCe-EEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 223459999999966677777777777 999999997777888899999999999999888799999999999999988
No 279
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.22 E-value=6.8e-09 Score=86.48 Aligned_cols=235 Identities=12% Similarity=0.215 Sum_probs=157.7
Q ss_pred CCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC
Q 038533 69 HPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI 147 (337)
Q Consensus 69 ~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 147 (337)
-..++..++|||.|. +|++... .|.+|.-.... .+..+.. ..|..+.|+| ++++|.+=+.
T Consensus 31 ~~~p~~~~~~SP~G~---------~l~~~~~~~V~~~~g~~~~--~l~~~~~-------~~V~~~~fSP-~~kYL~tw~~ 91 (561)
T COG5354 31 ENWPVAYVSESPLGT---------YLFSEHAAGVECWGGPSKA--KLVRFRH-------PDVKYLDFSP-NEKYLVTWSR 91 (561)
T ss_pred cCcchhheeecCcch---------heehhhccceEEccccchh--heeeeec-------CCceecccCc-ccceeeeecc
Confidence 567899999999999 8888876 99999988773 4444544 6799999999 9999998764
Q ss_pred CC---------------cEEEEeCCCccchhhhhccCCc--ee-EEEeC-CCcEEEEEcCCCeEEEEECCCCCCc-eeee
Q 038533 148 DT---------------TCTIWDIEKGVVETQLIAHDKE--VY-DICWG-EARVFASVSADGSVRIFDLRDKEHS-TIIY 207 (337)
Q Consensus 148 dg---------------~i~v~d~~~~~~~~~~~~~~~~--v~-~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~ 207 (337)
.+ .+.+||+.++..+..+.....+ .. -+.|+ ++++++-. ....+.++++ +.... ..+.
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~ 169 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFK 169 (561)
T ss_pred CCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchh
Confidence 43 4999999999988887755544 44 67888 66666655 3457999997 33321 1111
Q ss_pred cCCCCCCCceEEEeecC-CCcEEEEE-----EecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEc---
Q 038533 208 ESPQPDTPLLRLAWNKQ-DLRYMATI-----LMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVG--- 278 (337)
Q Consensus 208 ~~~~~~~~i~~~~~~~~-~~~~l~~~-----~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--- 278 (337)
.. ....+....|+|. +...|+.- +..+. +++|.+.. ...+.+..-....-..+.|++.|+.+++-.-
T Consensus 170 ~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~-~~i~sIp~-~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ 245 (561)
T COG5354 170 NL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAM-VRILSIPK-NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHT 245 (561)
T ss_pred hc--cccceeeEEecCCCCCceEEEEccccCCCCcE-EEEEEccC-CCeeeeeeeEeecccEEEEecCCceEEEEEEEee
Confidence 11 2357888899984 33344442 33444 88998875 4444443333334467899999984333221
Q ss_pred -------CCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEE--cCCcEEEEe
Q 038533 279 -------DDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIA--FSNKMQLLK 336 (337)
Q Consensus 279 -------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iw~ 336 (337)
.+..+.++++. .. ......+..++|.+++|.|.++.+++.+ .+..+.+++
T Consensus 246 ksnKsyfgesnLyl~~~~--e~------~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 246 KSNKSYFGESNLYLLRIT--ER------SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFD 304 (561)
T ss_pred ecccceeccceEEEEeec--cc------ccceeccccccceeeeecccCCceeEEecccccceeecc
Confidence 13567888887 31 1223336688999999999988777654 455555554
No 280
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.21 E-value=1.2e-10 Score=97.97 Aligned_cols=201 Identities=18% Similarity=0.277 Sum_probs=141.0
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCC-----ccceeeecCCCCCcccCCeeEEEeecCCC
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSS-----IEPVAVLNNSKSSEFCAPLTSFDWNEIEP 139 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 139 (337)
.+|...|..++--.+.. -+++++ | +|++|.++... ..+..+++.|+ .+|.++.|-. +.
T Consensus 732 ~GH~~~iRai~AidNEN---------SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHk-----k~i~~igfL~-~l 796 (1034)
T KOG4190|consen 732 TGHQEKIRAIAAIDNEN---------SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHK-----KPIHDIGFLA-DL 796 (1034)
T ss_pred cCcHHHhHHHHhccccc---------ceeeccCCceEEEEEeccccCccccceeeeEhhhcc-----Ccccceeeee-cc
Confidence 57778888776655554 555555 7 99999987431 24677888898 9999999986 66
Q ss_pred CeEEEeeCCCcEEEEeCCCccchhhhh---cc--CCceeEEEeCCCcEEEE-EcCCCeEEEEECCCCCCceeeec--CCC
Q 038533 140 KRIGTCSIDTTCTIWDIEKGVVETQLI---AH--DKEVYDICWGEARVFAS-VSADGSVRIFDLRDKEHSTIIYE--SPQ 211 (337)
Q Consensus 140 ~~l~~~~~dg~i~v~d~~~~~~~~~~~---~~--~~~v~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~--~~~ 211 (337)
..++++ ||.|++||.--++.+..+. .| .+.|.++.--+..+++. ++...+++++|.|..+....... .+.
T Consensus 797 r~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~ 874 (1034)
T KOG4190|consen 797 RSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPG 874 (1034)
T ss_pred ceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCC
Confidence 677765 7899999988888766443 12 12333333223344444 47889999999998875544433 245
Q ss_pred CCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEE-EeCC
Q 038533 212 PDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFI-WELP 289 (337)
Q Consensus 212 ~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i-w~~~ 289 (337)
.+..+.+++..+ .|+.++++-.+|. |.+.|.|+ +..+..++........++ .|..+ .|+....|.++.+ |..-
T Consensus 875 Pna~~R~iaVa~-~GN~lAa~LSnGc-i~~LDaR~-G~vINswrpmecdllqla-apsdq-~L~~saldHslaVnWhal 948 (1034)
T KOG4190|consen 875 PNALTRAIAVAD-KGNKLAAALSNGC-IAILDARN-GKVINSWRPMECDLLQLA-APSDQ-ALAQSALDHSLAVNWHAL 948 (1034)
T ss_pred CchheeEEEecc-CcchhhHHhcCCc-EEEEecCC-CceeccCCcccchhhhhc-CchhH-HHHhhcccceeEeeehhc
Confidence 567789999998 9999999999998 99999998 555655554444444444 24444 7777778888888 8765
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.20 E-value=4.9e-10 Score=90.42 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=110.7
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE--EeCC--eEEEEec
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA--SSGD--FLRLWDV 106 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~--~~~~--~v~vw~~ 106 (337)
+++||++.. +....++++......... .-...-...-+++.|..+.. ..++ ..+| .+.+|..
T Consensus 74 ~~llAv~~~----~K~~~~f~~~~~~~~~kl--~~~~~v~~~~~ai~~~~~~~--------sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 74 GRLVAVATS----SKQRAVFDYRENPKGAKL--LDVSCVPKRPTAISFIREDT--------SVLVADKAGDVYSFDILSA 139 (390)
T ss_pred ceEEEEEeC----CCceEEEEEecCCCccee--eeEeecccCcceeeeeeccc--------eEEEEeecCCceeeeeecc
Confidence 788888886 777778777765541111 00123344455666665554 1222 2345 7888887
Q ss_pred CCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh-ccCCceeEEEeCCCcEEEE
Q 038533 107 GDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI-AHDKEVYDICWGEARVFAS 185 (337)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~l~~ 185 (337)
..+ ....+-+|- +.++.++|+| |++.|+++..|..|++-.....-.+..+- +|..-|..++.-++..|++
T Consensus 140 ~~~---~~~~~lGhv-----Sml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS 210 (390)
T KOG3914|consen 140 DSG---RCEPILGHV-----SMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLS 210 (390)
T ss_pred ccc---Ccchhhhhh-----hhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeee
Confidence 764 334455777 8999999999 99999999999999998876655555554 7999999999998889999
Q ss_pred EcCCCeEEEEECCCCCCcee
Q 038533 186 VSADGSVRIFDLRDKEHSTI 205 (337)
Q Consensus 186 ~~~dg~i~iwd~~~~~~~~~ 205 (337)
++.|++|++||+++++....
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred cCCCCcEEEEecccCCcccc
Confidence 99999999999999986543
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=5.4e-08 Score=93.10 Aligned_cols=249 Identities=11% Similarity=0.112 Sum_probs=147.1
Q ss_pred eEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCCccceeeecCCCCC---------cccCCeeEEEeecCCCCeE
Q 038533 74 TKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSS---------EFCAPLTSFDWNEIEPKRI 142 (337)
Q Consensus 74 ~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~l 142 (337)
..+++++.+. .++++-.+ .|+++|.... ....+.+.... ..-.....+++++ +++.|
T Consensus 571 ~gvavd~~~g--------~lyVaDs~n~rI~v~d~~G~---~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~L 638 (1057)
T PLN02919 571 GKLAIDLLNN--------RLFISDSNHNRIVVTDLDGN---FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLL 638 (1057)
T ss_pred ceEEEECCCC--------eEEEEECCCCeEEEEeCCCC---EEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEE
Confidence 3567766433 36666553 9999998654 22222221000 0112357899988 66655
Q ss_pred EEe-eCCCcEEEEeCCCccchhhhhc-----------------cCCceeEEEeCC--CcEEEEEcCCCeEEEEECCCCCC
Q 038533 143 GTC-SIDTTCTIWDIEKGVVETQLIA-----------------HDKEVYDICWGE--ARVFASVSADGSVRIFDLRDKEH 202 (337)
Q Consensus 143 ~~~-~~dg~i~v~d~~~~~~~~~~~~-----------------~~~~v~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~ 202 (337)
+++ ..++.|+++|+.++.. .++.+ .-.....+++++ +.++++...++.|++||..++..
T Consensus 639 YVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 639 YVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred EEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 554 4567899999876542 22210 012245788883 55667777889999999877653
Q ss_pred ceeeecC-----C------CCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeE------------Eeec---
Q 038533 203 STIIYES-----P------QPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVA------------ELER--- 256 (337)
Q Consensus 203 ~~~~~~~-----~------~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~------------~~~~--- 256 (337)
....-.. . ..-.....++++| ++..|+++..+...|++||+.+....+. .+..
T Consensus 718 ~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 718 RVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred EEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 2111000 0 0012346799999 7776666655545599999886331110 0000
Q ss_pred -----ccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCC--CCC----ceeeeeCCCceeEEEEccCCCceEE
Q 038533 257 -----HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPN--GID----PMSMYSAGSEINQLQWSPAQPDWLA 325 (337)
Q Consensus 257 -----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--~~~----~~~~~~~~~~v~~~~~~~~~~~l~~ 325 (337)
.-.....++++++|. ++++-+.+++|++||...+...... +.. -......-.....++++++|+.+++
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred chhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 011346889999998 8888899999999999732211000 000 0001112235788999999986667
Q ss_pred EEcCCcEEEEeC
Q 038533 326 IAFSNKMQLLKV 337 (337)
Q Consensus 326 ~~~d~~i~iw~l 337 (337)
-+.++.|++|++
T Consensus 876 Dt~Nn~Irvid~ 887 (1057)
T PLN02919 876 DTNNSLIRYLDL 887 (1057)
T ss_pred ECCCCEEEEEEC
Confidence 778999999985
No 283
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=2.1e-09 Score=84.18 Aligned_cols=249 Identities=15% Similarity=0.209 Sum_probs=160.3
Q ss_pred CCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCCCC---ccceeeecCCCCC-------cccCCeeEEEee
Q 038533 68 DHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGDSS---IEPVAVLNNSKSS-------EFCAPLTSFDWN 135 (337)
Q Consensus 68 ~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~---~~~~~~~~~~~~~-------~~~~~i~~~~~~ 135 (337)
...+.|+++.|...|. +|++|. + .|.+|.-.... .+....+++|..+ +....|..+.|-
T Consensus 24 tead~ItaVefd~tg~---------YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~ 94 (460)
T COG5170 24 TEADKITAVEFDETGL---------YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWF 94 (460)
T ss_pred cccceeeEEEeccccc---------eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeee
Confidence 4456799999999998 999998 3 88888755442 3444556666522 222467788886
Q ss_pred cC-CCCeEEEeeCCCcEEEEeCCCcc-------------------ch-----------------------hhh-hccCCc
Q 038533 136 EI-EPKRIGTCSIDTTCTIWDIEKGV-------------------VE-----------------------TQL-IAHDKE 171 (337)
Q Consensus 136 ~~-~~~~l~~~~~dg~i~v~d~~~~~-------------------~~-----------------------~~~-~~~~~~ 171 (337)
.. ....++..+.|.+|++|.+.... ++ +.+ ..|..-
T Consensus 95 ~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh 174 (460)
T COG5170 95 DDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH 174 (460)
T ss_pred cCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE
Confidence 52 33567777889999999875430 00 000 235556
Q ss_pred eeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCC-----CCceEEEeecCCCcEEEEEEecCCEEEEEECC
Q 038533 172 VYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPD-----TPLLRLAWNKQDLRYMATILMDSNKVVILDIR 245 (337)
Q Consensus 172 v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~ 245 (337)
++++.++ +...++++ .|=.|.+|++......-.+.....|+ .-|++..|+|.....+.-.+..|. |++-|+|
T Consensus 175 iNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~-Ikl~DlR 252 (460)
T COG5170 175 INSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE-IKLNDLR 252 (460)
T ss_pred eeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc-EEehhhh
Confidence 8888998 55555554 56789999998765443333332232 357889999977778888888888 9999999
Q ss_pred CCCCC-----eEE----------eecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeC---
Q 038533 246 SPTLP-----VAE----------LERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSA--- 307 (337)
Q Consensus 246 ~~~~~-----~~~----------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--- 307 (337)
...-+ +.. +..-...|..+.|+++|+ ++++-+. -+++|||++..+ .| ..+..-|
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRdy-ltvkiwDvnm~k--~p----ikTi~~h~~l 324 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR-YILSRDY-LTVKIWDVNMAK--NP----IKTIPMHCDL 324 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc-EEEEecc-ceEEEEeccccc--CC----ceeechHHHH
Confidence 43211 111 111234788899999998 7777654 589999999433 21 1122112
Q ss_pred ---------CCce---eEEEEccCCCceEEEEcCCcEEEE
Q 038533 308 ---------GSEI---NQLQWSPAQPDWLAIAFSNKMQLL 335 (337)
Q Consensus 308 ---------~~~v---~~~~~~~~~~~l~~~~~d~~i~iw 335 (337)
...| ..+.||.|.+.+++++..+..-++
T Consensus 325 ~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 325 MDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred HHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 1222 457788888888888766554443
No 284
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.16 E-value=1.1e-09 Score=97.09 Aligned_cols=180 Identities=14% Similarity=0.117 Sum_probs=134.9
Q ss_pred cEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccC
Q 038533 92 HLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHD 169 (337)
Q Consensus 92 ~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~ 169 (337)
..+..|+ . .+..+|+.+.+ ..+...-.. ..|+-+.. ++..+.+|...|+|.+-|.++.+.++++.+|.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~--e~r~~~v~a-----~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEK--ETRTTNVSA-----SGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred cceeecchhhheeeeecccce--eeeeeeccC-----CceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence 3555555 3 88888988874 333333222 34665654 67899999999999999999999999999999
Q ss_pred CceeEEEeCCCcEEEEEcC---------CCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEE
Q 038533 170 KEVYDICWGEARVFASVSA---------DGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVV 240 (337)
Q Consensus 170 ~~v~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~ 240 (337)
+.|.++... |++|++++. |.-|++||+|..+....+... ..-.-+.|+|.-...+++++..|. ..
T Consensus 218 ~siSDfDv~-GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~----~~P~flrf~Psl~t~~~V~S~sGq-~q 291 (1118)
T KOG1275|consen 218 GSISDFDVQ-GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP----YGPQFLRFHPSLTTRLAVTSQSGQ-FQ 291 (1118)
T ss_pred cceeeeecc-CCeEEEeecccccccccccchhhhhhhhhhhccCCcccc----cCchhhhhcccccceEEEEecccc-ee
Confidence 999877664 888888876 455899999998865554332 122557788877888999999998 99
Q ss_pred EEECCCCCCC---eEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeC
Q 038533 241 ILDIRSPTLP---VAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWEL 288 (337)
Q Consensus 241 i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 288 (337)
+-|..+...| +..+......+.++.+++++. .++.|..+|.|.+|.-
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecC
Confidence 9994433333 334444455699999999999 9999999999999973
No 285
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.15 E-value=1.4e-09 Score=83.04 Aligned_cols=145 Identities=14% Similarity=0.170 Sum_probs=100.5
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-------CeEEE
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-------DFLRL 103 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-------~~v~v 103 (337)
++.++++.. ||.+.+++.+. .+.....+...|.+ -.+.+....+. ++.+++ |..+.
T Consensus 101 ~t~V~~~~~----dg~~~v~s~~~---~~~~~~~i~~~~~~-~as~~~~~~~~---------~i~s~~~g~~n~~d~~~a 163 (319)
T KOG4714|consen 101 DNRVCIGYA----DGSLAVFSTDK---DLALMSRIPSIHSG-SASRKICRHGN---------SILSGGCGNWNAQDNFYA 163 (319)
T ss_pred CCceEecCC----CceEEEEechH---HHhhhhhccccccc-ccccceeeccc---------EEecCCcceEeeccceee
Confidence 888999886 99999977664 11111111122222 22333444454 555543 25667
Q ss_pred EecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc-chhhhhccCCceeEEEeC--CC
Q 038533 104 WDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV-VETQLIAHDKEVYDICWG--EA 180 (337)
Q Consensus 104 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~--~~ 180 (337)
|+++............ ..|++++-+|...+++++|+.||.+-+||.+... +...++.|+.+++.+.|+ ++
T Consensus 164 ~~~~p~~t~~~~~~~~-------~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p 236 (319)
T KOG4714|consen 164 NTLDPIKTLIPSKKAL-------DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP 236 (319)
T ss_pred eccccccccccccccc-------ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc
Confidence 7766543222222222 4599999999777889999999999999998876 455678999999999999 58
Q ss_pred cEEEEEcCCCeEEEEECCC
Q 038533 181 RVFASVSADGSVRIFDLRD 199 (337)
Q Consensus 181 ~~l~~~~~dg~i~iwd~~~ 199 (337)
..|+++++||.+--||..+
T Consensus 237 ~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 237 EHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hheeEecCCCcEEEEcCCC
Confidence 8999999999999999874
No 286
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=1.6e-08 Score=88.57 Aligned_cols=246 Identities=17% Similarity=0.170 Sum_probs=163.6
Q ss_pred eeEEEEe-cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCc--ccCcCCcc-EEEEeC-
Q 038533 24 LYAMAVC-GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSS--RKSSSNRH-LLASSG- 98 (337)
Q Consensus 24 v~~~~~s-~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~--~~~~~~~~-~l~~~~- 98 (337)
-.++.|+ +.+||.|+ ...|.+. +....+... .+ ..|...|+.+.|.|.... ..++.... ++|++.
T Consensus 18 ~~A~Dw~~~GLiAygs-----hslV~VV--Ds~s~q~iq--si-e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~ 87 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGS-----HSLVSVV--DSRSLQLIQ--SI-ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI 87 (1062)
T ss_pred ccccccCccceEEEec-----CceEEEE--ehhhhhhhh--cc-ccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence 5678999 99999999 6777774 433332222 33 568899999999986431 12222223 444444
Q ss_pred -CeEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecC--CC-CeEEEeeCCCcEEEEeCCCccchhhhhccCCceeE
Q 038533 99 -DFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEI--EP-KRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYD 174 (337)
Q Consensus 99 -~~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~-~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~ 174 (337)
+.|.+||.... ..+..+..|. .++..++|-+. +. ..+++-.....+.+|+..+|+.............+
T Consensus 88 ~GrIil~d~~~~--s~~~~l~~~~-----~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~ 160 (1062)
T KOG1912|consen 88 SGRIILVDFVLA--SVINWLSHSN-----DSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSC 160 (1062)
T ss_pred cCcEEEEEehhh--hhhhhhcCCC-----cchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceee
Confidence 29999999988 5667777777 88999998763 22 56777677789999999999988777765666777
Q ss_pred EEeC--CCcEEEEEcCCCeEEEEECCCCCC----ceeeecCCCCC-------------------------CCceEEEeec
Q 038533 175 ICWG--EARVFASVSADGSVRIFDLRDKEH----STIIYESPQPD-------------------------TPLLRLAWNK 223 (337)
Q Consensus 175 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~-------------------------~~i~~~~~~~ 223 (337)
+.++ +.+.+..-+..|.+.+-+.-.... .+.++....|. .....++|+|
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p 240 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP 240 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence 8888 566676666677777666532211 11111000000 0122456788
Q ss_pred CCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCC-CeEEEEcCCCcEEEEeCC
Q 038533 224 QDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSR-RHICSVGDDSQAFIWELP 289 (337)
Q Consensus 224 ~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~ 289 (337)
.-+.++....... +.++|++- ..++....-..+.+.-+.+-|+.+ ..|++.-.||.+.+|-.+
T Consensus 241 -~~rn~lfi~~pre-llv~dle~-~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 241 -HWRNILFITFPRE-LLVFDLEY-ECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred -hhhceEEEEeccc-eEEEcchh-hceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEee
Confidence 4444444455555 99999987 566777766666666777777654 278888999999999876
No 287
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.13 E-value=9.4e-08 Score=89.91 Aligned_cols=238 Identities=14% Similarity=0.189 Sum_probs=139.1
Q ss_pred CCCCCeEEEecCCCCcccCcCCccEEEEe-CCeEEEE----ecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEE
Q 038533 69 HPYPPTKLMFDPNSSSRKSSSNRHLLASS-GDFLRLW----DVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIG 143 (337)
Q Consensus 69 ~~~~i~~i~~~~~~~~~~~~~~~~~l~~~-~~~v~vw----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 143 (337)
..+.|.++.|.++.. .+++.- ++.|.+. +......+.+..+. ..|.+++||| |..+++
T Consensus 74 ~~~~ivs~~yl~d~~--------~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd--------~GI~a~~WSP-D~Ella 136 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE--------SLCIALASGDIILVREDPDPDEDEIEIVGSVD--------SGILAASWSP-DEELLA 136 (928)
T ss_pred CCCcEEEEEeccCCC--------cEEEEECCceEEEEEccCCCCCceeEEEEEEc--------CcEEEEEECC-CcCEEE
Confidence 457899999999886 344333 3466666 55555555555554 6899999999 999999
Q ss_pred EeeCCCcEEEEeCCCccchhhhhcc-----CCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCcee-eecCCCCCCCc
Q 038533 144 TCSIDTTCTIWDIEKGVVETQLIAH-----DKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTI-IYESPQPDTPL 216 (337)
Q Consensus 144 ~~~~dg~i~v~d~~~~~~~~~~~~~-----~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~i 216 (337)
..+.++++.+.+ ++..++....-+ .....++-|- ....| =|+..+... -.++....... ..... .+..-
T Consensus 137 ~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF-~Gs~gK~aa-~~~~~p~~~~~d~~~~s-~dd~~ 212 (928)
T PF04762_consen 137 LVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQF-HGSAGKAAA-RQLRDPTVPKVDEGKLS-WDDGR 212 (928)
T ss_pred EEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccCcc-Ccchhhhhh-hhccCCCCCccccCccc-cCCCc
Confidence 999999998875 344433332211 1222334443 11111 011100000 00111111100 00011 34566
Q ss_pred eEEEeecCCCcEEEEEEe---cC--CEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcC---CCcEEEEeC
Q 038533 217 LRLAWNKQDLRYMATILM---DS--NKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGD---DSQAFIWEL 288 (337)
Q Consensus 217 ~~~~~~~~~~~~l~~~~~---d~--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~ 288 (337)
..++|.. ||.++++.+. .+ ..++||+-. +....+-+.-.+--.+++|-|.|. ++|+.-. ...|.+|.-
T Consensus 213 ~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re--G~L~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfEr 288 (928)
T PF04762_consen 213 VRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE--GELQSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFER 288 (928)
T ss_pred eEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC--ceEEeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEec
Confidence 7899998 9999999886 33 469999875 332222222223335789999999 8888764 356888887
Q ss_pred CCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 289 PLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
+ .+.. ++..+........|..++|++++..|+..-.| .|++|-
T Consensus 289 N--GLrh--geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt 331 (928)
T PF04762_consen 289 N--GLRH--GEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWT 331 (928)
T ss_pred C--CcEe--eeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEE
Confidence 7 4332 22222222456689999999999766655444 499995
No 288
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=3.9e-08 Score=82.98 Aligned_cols=234 Identities=14% Similarity=0.267 Sum_probs=156.6
Q ss_pred CCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC-
Q 038533 70 PYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI- 147 (337)
Q Consensus 70 ~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~- 147 (337)
+-.=+-+.|||.|. +|++--. .|.+|--.+- ...+.+.. ..|.-+.||| +.++|++=+.
T Consensus 210 nWTetyv~wSP~GT---------YL~t~Hk~GI~lWGG~~f--~r~~RF~H-------p~Vq~idfSP-~EkYLVT~s~~ 270 (698)
T KOG2314|consen 210 NWTETYVRWSPKGT---------YLVTFHKQGIALWGGESF--DRIQRFYH-------PGVQFIDFSP-NEKYLVTYSPE 270 (698)
T ss_pred cceeeeEEecCCce---------EEEEEeccceeeecCccH--HHHHhccC-------CCceeeecCC-ccceEEEecCC
Confidence 33457799999999 9999887 9999975554 44555544 5688999999 8999998752
Q ss_pred ----------CCcEEEEeCCCccchhhhhcc--CCce-eEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCC
Q 038533 148 ----------DTTCTIWDIEKGVVETQLIAH--DKEV-YDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPD 213 (337)
Q Consensus 148 ----------dg~i~v~d~~~~~~~~~~~~~--~~~v-~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 213 (337)
...++|||+.+|...+.+... ...+ .-+.|+ +++++|--.. ..|.||+..+... +....-.-
T Consensus 271 p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l---ld~Kslki 346 (698)
T KOG2314|consen 271 PIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML---LDKKSLKI 346 (698)
T ss_pred ccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee---ecccccCC
Confidence 257999999999988877652 2222 346899 8888887666 5688998776431 11111234
Q ss_pred CCceEEEeecCCCcEEEEEEecCC----EEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEc----------C
Q 038533 214 TPLLRLAWNKQDLRYMATILMDSN----KVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVG----------D 279 (337)
Q Consensus 214 ~~i~~~~~~~~~~~~l~~~~~d~~----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----------~ 279 (337)
..|....|+| .+++||--..... ++.+..+.+ ++.+++..-|.-.=..+-|-.+|. +|+.-- .
T Consensus 347 ~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs-~~~iRt~nlfnVsDckLhWQk~gd-yLcvkvdR~tK~~~~g~ 423 (698)
T KOG2314|consen 347 SGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPS-KREIRTKNLFNVSDCKLHWQKSGD-YLCVKVDRHTKSKVKGQ 423 (698)
T ss_pred ccccCcccCC-CcceEEEEcccccCCcceEEEEecCc-cceeeeccceeeeccEEEeccCCc-EEEEEEEeeccccccce
Confidence 6789999999 7777775443221 356666655 344555544544445677888888 666432 1
Q ss_pred CCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEc---CCcEEEEe
Q 038533 280 DSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAF---SNKMQLLK 336 (337)
Q Consensus 280 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~iw~ 336 (337)
-..+.|+.++ + ...+.....-...|...+|-|.|..++..+. ..++++|.
T Consensus 424 f~n~eIfrir--e-----KdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~ 476 (698)
T KOG2314|consen 424 FSNLEIFRIR--E-----KDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYA 476 (698)
T ss_pred EeeEEEEEee--c-----cCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEE
Confidence 2246677777 3 1234455566788999999999987776542 24566554
No 289
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.12 E-value=2.8e-07 Score=71.86 Aligned_cols=230 Identities=13% Similarity=0.167 Sum_probs=128.7
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCC
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGD 108 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~ 108 (337)
|++||+-. |..|.|-.-..+-.....+.....+..-.=..++||||+. +||.+.. +|++||+..
T Consensus 9 Gk~lAi~q-----d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t---------lLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 9 GKLLAILQ-----DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT---------LLAYAESTGTIRVFDLMG 74 (282)
T ss_pred CcEEEEEe-----ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc---------EEEEEcCCCeEEEEeccc
Confidence 78888877 8888886555443333222222234444557899999999 9998874 999999987
Q ss_pred CCccceeeecC-C-CCCcccCCeeEEEeecCC-----CCeEEEeeCCCcEEEEeCCCc-----cchhhhh---ccCCcee
Q 038533 109 SSIEPVAVLNN-S-KSSEFCAPLTSFDWNEIE-----PKRIGTCSIDTTCTIWDIEKG-----VVETQLI---AHDKEVY 173 (337)
Q Consensus 109 ~~~~~~~~~~~-~-~~~~~~~~i~~~~~~~~~-----~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~---~~~~~v~ 173 (337)
.++ ..+.. + .......+|..+.|-+.. ...|++-...|.++-|-+..+ +....+. .+...|.
T Consensus 75 ~~l---f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~ 151 (282)
T PF15492_consen 75 SEL---FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGIN 151 (282)
T ss_pred cee---EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCcee
Confidence 532 12211 1 112233677888886532 235666777888888775332 1222222 2456899
Q ss_pred EEEeCC-CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC------EEEEEECCC
Q 038533 174 DICWGE-ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN------KVVILDIRS 246 (337)
Q Consensus 174 ~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~------~i~i~d~~~ 246 (337)
++.+++ .++|++|+.... +.+. .. .....+++-..-.....+..+...+.. +..+|.+-+
T Consensus 152 ~~vy~p~h~LLlVgG~~~~------~~~~--s~-----a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~ 218 (282)
T PF15492_consen 152 SAVYHPKHRLLLVGGCEQN------QDGM--SK-----ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS 218 (282)
T ss_pred EEEEcCCCCEEEEeccCCC------CCcc--cc-----ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccc
Confidence 999994 567776665332 0000 00 011222222221111122211111111 012232221
Q ss_pred CCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCC
Q 038533 247 PTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVA 294 (337)
Q Consensus 247 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 294 (337)
.............|..+..+|+|. +||+...+|.|.+|++. .+.
T Consensus 219 -~~~fs~~~~~~d~i~kmSlSPdg~-~La~ih~sG~lsLW~iP--sL~ 262 (282)
T PF15492_consen 219 -FKFFSRQGQEQDGIFKMSLSPDGS-LLACIHFSGSLSLWEIP--SLR 262 (282)
T ss_pred -eeeeeccccCCCceEEEEECCCCC-EEEEEEcCCeEEEEecC--cch
Confidence 111111122356899999999999 99999999999999999 544
No 290
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=3.1e-10 Score=95.49 Aligned_cols=286 Identities=14% Similarity=0.128 Sum_probs=174.7
Q ss_pred CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceec---CCCcCCCCCCCCeEEEecCCCCcccCcCCccEE
Q 038533 20 SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKT---HPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLL 94 (337)
Q Consensus 20 ~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~---~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l 94 (337)
|...|.+++-- .+-+++++. |++|++|.+..+...... ..+. ..|..+|+.+.|-.+.+ .+
T Consensus 734 H~~~iRai~AidNENSFiSASk----DKTVKLWSik~EgD~~~tsaCQfTY-~aHkk~i~~igfL~~lr---------~i 799 (1034)
T KOG4190|consen 734 HQEKIRAIAAIDNENSFISASK----DKTVKLWSIKPEGDEIGTSACQFTY-QAHKKPIHDIGFLADLR---------SI 799 (1034)
T ss_pred cHHHhHHHHhcccccceeeccC----CceEEEEEeccccCccccceeeeEh-hhccCcccceeeeeccc---------ee
Confidence 45566666544 778888887 999999999876554331 0122 68999999999999998 89
Q ss_pred EEeCCeEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEe-eCCCcEEEEeCCCccchhhhh-----cc
Q 038533 95 ASSGDFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTC-SIDTTCTIWDIEKGVVETQLI-----AH 168 (337)
Q Consensus 95 ~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~-----~~ 168 (337)
+++.+.|.+||.--+ +++........++-...|.|+.- .+..++++| +...+|+++|.+.++-...++ +.
T Consensus 800 ~ScD~giHlWDPFig--r~Laq~~dapk~~a~~~ikcl~n--v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 800 ASCDGGIHLWDPFIG--RLLAQMEDAPKEGAGGNIKCLEN--VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred eeccCcceeeccccc--chhHhhhcCcccCCCceeEeccc--CcchheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 988889999998776 33332222211111134555432 133444444 788999999999887544443 34
Q ss_pred CCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEE-EECCC
Q 038533 169 DKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI-LDIRS 246 (337)
Q Consensus 169 ~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i-~d~~~ 246 (337)
...+.+++.. .|++++.+-.+|.|.+.|.|+++.+...... +.....++ .| ..+.|+....|.. +.+ |-.-.
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm---ecdllqla-ap-sdq~L~~saldHs-laVnWhald 949 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM---ECDLLQLA-AP-SDQALAQSALDHS-LAVNWHALD 949 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc---cchhhhhc-Cc-hhHHHHhhcccce-eEeeehhcC
Confidence 4568889988 6999999999999999999999854432211 12222222 13 5566666666666 776 65443
Q ss_pred CCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEE
Q 038533 247 PTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAI 326 (337)
Q Consensus 247 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 326 (337)
+...........+..- ...-|+ -|+++...+.+.+|.-.. ...-.............+..++++--|-...++++
T Consensus 950 -gimh~q~kpppepahf--lqsvgp-SLV~a~~Gn~lgVYad~a-~~ha~stitKiR~d~f~G~lTala~LPLN~afLaG 1024 (1034)
T KOG4190|consen 950 -GIMHLQDKPPPEPAHF--LQSVGP-SLVTAQNGNILGVYADSA-ELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAG 1024 (1034)
T ss_pred -CeeeeccCCCCcchhh--hhccCc-eeEEeccCcEEEEEecch-hhhhhhhhccccccccCCccceeeeccccchhhcc
Confidence 2211111111111111 112355 677777667777774331 10000000011111235567888888988788888
Q ss_pred EcCCcEEE
Q 038533 327 AFSNKMQL 334 (337)
Q Consensus 327 ~~d~~i~i 334 (337)
...|.|.+
T Consensus 1025 ne~G~IaL 1032 (1034)
T KOG4190|consen 1025 NEHGAIAL 1032 (1034)
T ss_pred CCCCceee
Confidence 88888875
No 291
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.12 E-value=2.2e-07 Score=89.00 Aligned_cols=245 Identities=15% Similarity=0.112 Sum_probs=146.4
Q ss_pred eEEEEe---cceEEEeeeeccCcceEEEEEecCCCcceecC-C-------CcCCCCCCCCeEEEecCCCCcccCcCCccE
Q 038533 25 YAMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTH-P-------SLSFDHPYPPTKLMFDPNSSSRKSSSNRHL 93 (337)
Q Consensus 25 ~~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~-~-------~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~ 93 (337)
..++++ +.++++-+. ++.|++++.+......... . .+....-.....|++.+++. .
T Consensus 571 ~gvavd~~~g~lyVaDs~----n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn---------~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSN----HNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKN---------L 637 (1057)
T ss_pred ceEEEECCCCeEEEEECC----CCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCC---------E
Confidence 346675 344444443 7889998765432111100 0 00011123467899998876 4
Q ss_pred EEEe-C-C-eEEEEecCCCCccceeeecCCCCC------------cccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCC
Q 038533 94 LASS-G-D-FLRLWDVGDSSIEPVAVLNNSKSS------------EFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEK 158 (337)
Q Consensus 94 l~~~-~-~-~v~vw~~~~~~~~~~~~~~~~~~~------------~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 158 (337)
|..+ . + .|+++|+.++. +.++.+.... ..-.....++++|.++.++++.+.++.|++||..+
T Consensus 638 LYVaDt~n~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~ 714 (1057)
T PLN02919 638 LYVADTENHALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD 714 (1057)
T ss_pred EEEEeCCCceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC
Confidence 4443 3 3 89999988763 2222211000 00023458999985566777778889999999877
Q ss_pred ccchhhhh---------c------cCCceeEEEeC-CCc-EEEEEcCCCeEEEEECCCCCCceeee----------cCCC
Q 038533 159 GVVETQLI---------A------HDKEVYDICWG-EAR-VFASVSADGSVRIFDLRDKEHSTIIY----------ESPQ 211 (337)
Q Consensus 159 ~~~~~~~~---------~------~~~~v~~~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~ 211 (337)
+... .+. + .-.....++++ +++ ++++-+.++.|++||+.++....... ....
T Consensus 715 g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 715 GVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred CeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 6421 111 0 11235678898 566 55666678999999998765221110 0000
Q ss_pred C--------CCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeec--------------ccceeeEEEeCCC
Q 038533 212 P--------DTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELER--------------HRACVNAIAWAPQ 269 (337)
Q Consensus 212 ~--------~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~--------------~~~~v~~~~~~~~ 269 (337)
. -..-..+++++ +++++++-..++. |++||..+ +. +..+.+ .-.....++++++
T Consensus 794 ~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~r-IrviD~~t-g~-v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 794 HDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHK-IKKLDPAT-KR-VTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred CCCchhhhhccCCceeeEeC-CCcEEEEECCCCE-EEEEECCC-Ce-EEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 0 01235788988 8887666666666 99999876 32 222221 1125678999999
Q ss_pred CCCeEEEEcCCCcEEEEeCCCC
Q 038533 270 SRRHICSVGDDSQAFIWELPLP 291 (337)
Q Consensus 270 ~~~~l~~~~~dg~i~iw~~~~~ 291 (337)
|+ ++++-+.++.|++||+...
T Consensus 870 G~-lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 870 GR-LFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred CC-EEEEECCCCEEEEEECCCC
Confidence 98 8899899999999999843
No 292
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.11 E-value=1.6e-07 Score=81.22 Aligned_cols=190 Identities=9% Similarity=0.041 Sum_probs=116.5
Q ss_pred CCeEEEecCCCCcccCcCCccEEEEe-C---C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEE-e
Q 038533 72 PPTKLMFDPNSSSRKSSSNRHLLASS-G---D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT-C 145 (337)
Q Consensus 72 ~i~~i~~~~~~~~~~~~~~~~~l~~~-~---~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~ 145 (337)
.+....|+|+++ .+++.. . + .|.++|+.+++.+.+.... +......|+| +++.++. .
T Consensus 189 ~~~~p~wSpDG~--------~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~--------g~~~~~~~SP-DG~~la~~~ 251 (419)
T PRK04043 189 LNIFPKWANKEQ--------TAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ--------GMLVVSDVSK-DGSKLLLTM 251 (419)
T ss_pred CeEeEEECCCCC--------cEEEEEEccCCCCEEEEEECCCCcEEEEecCC--------CcEEeeEECC-CCCEEEEEE
Confidence 677899999997 334432 1 3 8999999888544433322 4456778999 8876554 3
Q ss_pred eCC--CcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcC-CC--eEEEEECCCCCCceeeecCCCCCCCceEE
Q 038533 146 SID--TTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSA-DG--SVRIFDLRDKEHSTIIYESPQPDTPLLRL 219 (337)
Q Consensus 146 ~~d--g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~i~~~ 219 (337)
+.+ ..|.++|+.+++. ..+..+........|+ +++.++..+. .+ .|.+.|+.+++........ . ...
T Consensus 252 ~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g----~--~~~ 324 (419)
T PRK04043 252 APKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG----K--NNS 324 (419)
T ss_pred ccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC----C--cCc
Confidence 333 4688888877753 3343333333456799 6777766653 33 5888888877643333222 1 124
Q ss_pred EeecCCCcEEEEEEecC--------CEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCc--EEEEeCC
Q 038533 220 AWNKQDLRYMATILMDS--------NKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQ--AFIWELP 289 (337)
Q Consensus 220 ~~~~~~~~~l~~~~~d~--------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~iw~~~ 289 (337)
.|+| +++.++...... ..|.+.|+... . ...+... .......|+|+|+.++++....+. +.+.++.
T Consensus 325 ~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g-~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 325 SVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNSD-Y-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred eECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCCC-C-eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 8999 888887766542 24888898763 2 3444432 233468899999944444444444 4445554
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.10 E-value=8.1e-07 Score=71.64 Aligned_cols=217 Identities=10% Similarity=0.055 Sum_probs=135.3
Q ss_pred EEEecC-CCCcccCcCCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcE
Q 038533 75 KLMFDP-NSSSRKSSSNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTC 151 (337)
Q Consensus 75 ~i~~~~-~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i 151 (337)
++.|.+ ++. ++.+.- . .|..|+..++. . ..+.. .....+++...+ ..++.+... .+
T Consensus 4 gp~~d~~~g~---------l~~~D~~~~~i~~~~~~~~~--~-~~~~~-------~~~~G~~~~~~~-g~l~v~~~~-~~ 62 (246)
T PF08450_consen 4 GPVWDPRDGR---------LYWVDIPGGRIYRVDPDTGE--V-EVIDL-------PGPNGMAFDRPD-GRLYVADSG-GI 62 (246)
T ss_dssp EEEEETTTTE---------EEEEETTTTEEEEEETTTTE--E-EEEES-------SSEEEEEEECTT-SEEEEEETT-CE
T ss_pred ceEEECCCCE---------EEEEEcCCCEEEEEECCCCe--E-EEEec-------CCCceEEEEccC-CEEEEEEcC-ce
Confidence 567887 554 777765 4 89999998873 2 22332 236678887325 555555554 45
Q ss_pred EEEeCCCccchhhhhc-----cCCceeEEEeC-CCcEEEEEcCC--------CeEEEEECCCCCCceeeecCCCCCCCce
Q 038533 152 TIWDIEKGVVETQLIA-----HDKEVYDICWG-EARVFASVSAD--------GSVRIFDLRDKEHSTIIYESPQPDTPLL 217 (337)
Q Consensus 152 ~v~d~~~~~~~~~~~~-----~~~~v~~~~~~-~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~i~ 217 (337)
.++|..+++....... .....+++++. ++++.++.... |.|..++.. ++....... -...+
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~----~~~pN 137 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG----LGFPN 137 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE----ESSEE
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC----ccccc
Confidence 6669888764332221 34567899999 67766665543 567777777 442222222 24568
Q ss_pred EEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeE---Ee---ecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCC
Q 038533 218 RLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVA---EL---ERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLP 291 (337)
Q Consensus 218 ~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~---~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 291 (337)
.++|+| +++.|+++......|..|++......+. .+ ....+..-.+++.++|. +.++....+.|.+++.+
T Consensus 138 Gi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-- 213 (246)
T PF08450_consen 138 GIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-- 213 (246)
T ss_dssp EEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT--
T ss_pred ceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC--
Confidence 999999 8888877666666699999975443121 12 22223477899999998 77777778999999987
Q ss_pred CCCCCCCCCceeeeeCCCceeEEEEc-cCCCceEEEE
Q 038533 292 PVAGPNGIDPMSMYSAGSEINQLQWS-PAQPDWLAIA 327 (337)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 327 (337)
+.....+.-....+++++|. |+...|+.++
T Consensus 214 ------G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 214 ------GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp ------SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ------ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 22222333334589999994 6656666554
No 294
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.10 E-value=1.6e-07 Score=80.88 Aligned_cols=217 Identities=15% Similarity=0.002 Sum_probs=122.5
Q ss_pred EEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhcc-C-
Q 038533 93 LLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAH-D- 169 (337)
Q Consensus 93 ~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~- 169 (337)
+++...+ .+..||..++ +.+..+................. .+..++.+..+|.+..+|.++++.+...... .
T Consensus 148 v~v~~~~g~l~a~d~~tG--~~~W~~~~~~~~~~~~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 222 (377)
T TIGR03300 148 VVVRTNDGRLTALDAATG--ERLWTYSRVTPALTLRGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK 222 (377)
T ss_pred EEEECCCCeEEEEEcCCC--ceeeEEccCCCceeecCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence 5555556 9999999988 44444433210000000011111 1246778888899999999998765432210 0
Q ss_pred --Cc------e-eEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEE
Q 038533 170 --KE------V-YDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVV 240 (337)
Q Consensus 170 --~~------v-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~ 240 (337)
.. + ....+ .+..++.++.+|.+..||..+++..-... . ........ .+..+++++.++. ++
T Consensus 223 g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~----~~~~~p~~---~~~~vyv~~~~G~-l~ 292 (377)
T TIGR03300 223 GRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRD-A----SSYQGPAV---DDNRLYVTDADGV-VV 292 (377)
T ss_pred CCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeec-c----CCccCceE---eCCEEEEECCCCe-EE
Confidence 00 0 01111 25678888889999999999887433221 1 11122222 4567777788888 99
Q ss_pred EEECCCCCCCeEEeeccc-ceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccC
Q 038533 241 ILDIRSPTLPVAELERHR-ACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPA 319 (337)
Q Consensus 241 i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 319 (337)
.+|..+ ++.+....... ....+... .+. .+++++.+|.++++|...++ ..-....+...+..--...+
T Consensus 293 ~~d~~t-G~~~W~~~~~~~~~~ssp~i--~g~-~l~~~~~~G~l~~~d~~tG~-------~~~~~~~~~~~~~~sp~~~~ 361 (377)
T TIGR03300 293 ALDRRS-GSELWKNDELKYRQLTAPAV--VGG-YLVVGDFEGYLHWLSREDGS-------FVARLKTDGSGIASPPVVVG 361 (377)
T ss_pred EEECCC-CcEEEccccccCCccccCEE--ECC-EEEEEeCCCEEEEEECCCCC-------EEEEEEcCCCccccCCEEEC
Confidence 999987 44443332111 11122222 345 78899999999999988322 22233333333322222223
Q ss_pred CCceEEEEcCCcEEEEe
Q 038533 320 QPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 320 ~~~l~~~~~d~~i~iw~ 336 (337)
+ .|+.++.||.|..|+
T Consensus 362 ~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 362 D-GLLVQTRDGDLYAFR 377 (377)
T ss_pred C-EEEEEeCCceEEEeC
Confidence 4 588999999998764
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=6.7e-10 Score=88.02 Aligned_cols=180 Identities=15% Similarity=0.125 Sum_probs=124.0
Q ss_pred eeeeeCCCceeEEEEe----cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCC
Q 038533 15 SVTHESPYPLYAMAVC----GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSN 90 (337)
Q Consensus 15 ~~~~~~~~~v~~~~~s----~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~ 90 (337)
+..++.+..-.| +|+ +-.+++|. +-.+-+-++. ++..+. +.....|.++.|...++
T Consensus 206 ~~SlQi~~a~~C-awSlni~gyhfs~G~-----sqqv~L~nve--tg~~qs-----f~sksDVfAlQf~~s~n------- 265 (425)
T KOG2695|consen 206 LCSLQIPKAWSC-AWSLNIMGYHFSVGL-----SQQVLLTNVE--TGHQQS-----FQSKSDVFALQFAGSDN------- 265 (425)
T ss_pred eeeecCCcchhh-hhhhccceeeecccc-----cceeEEEEee--cccccc-----cccchhHHHHHhcccCC-------
Confidence 344555444344 787 66666776 7777775544 333332 56778899999998887
Q ss_pred ccEEEEeCC--eEEEEecCCC---CccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccc---h
Q 038533 91 RHLLASSGD--FLRLWDVGDS---SIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVV---E 162 (337)
Q Consensus 91 ~~~l~~~~~--~v~vw~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~---~ 162 (337)
++..|.. .|..+|++.. ...+...+. |. +.|+++..-..++++|++.+.+|+|++||++.-++ +
T Consensus 266 --Lv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~-----Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V 337 (425)
T KOG2695|consen 266 --LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HD-----SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSV 337 (425)
T ss_pred --eeEecccCCcEEEEEeeecccCCCcceEEEE-cC-----cchhhhhhhccccceEeeccCcCceeEeeehhhhcccce
Confidence 8888774 9999999865 123333333 33 78888887655788999999999999999987766 7
Q ss_pred hhhhccCCceeEEEeC---CCcEEEEEcCCCeEEEEECCCCCCceeeecC-CCCCCCceEEEee
Q 038533 163 TQLIAHDKEVYDICWG---EARVFASVSADGSVRIFDLRDKEHSTIIYES-PQPDTPLLRLAWN 222 (337)
Q Consensus 163 ~~~~~~~~~v~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~i~~~~~~ 222 (337)
..+.+|-..-.-+-++ .+..+++++.|...++|.++.+.....+... ...+..+.+++|.
T Consensus 338 ~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 338 MQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred eeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 7777886554444444 3668888999999999999988765544322 1122356666664
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.02 E-value=1e-08 Score=82.95 Aligned_cols=154 Identities=12% Similarity=0.121 Sum_probs=101.4
Q ss_pred EEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCC-CCe
Q 038533 174 DICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT-LPV 251 (337)
Q Consensus 174 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~-~~~ 251 (337)
.+..+ .+++++.+..+....+++++.............-...-.++.|.. +.....++..-|. ++-+|+-+.. .+.
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~-~~~sv~v~dkagD-~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIR-EDTSVLVADKAGD-VYSFDILSADSGRC 144 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeee-ccceEEEEeecCC-ceeeeeecccccCc
Confidence 34444 477888888888877888776553111111111123344555554 3444444333333 4444443321 334
Q ss_pred EEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCc
Q 038533 252 AELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNK 331 (337)
Q Consensus 252 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 331 (337)
..+.+|-..++.++|+||++ +++++..|..|++-........ -....+|..-|..++.-++.. |++++.|++
T Consensus 145 ~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~I------esfclGH~eFVS~isl~~~~~-LlS~sGD~t 216 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVI------ESFCLGHKEFVSTISLTDNYL-LLSGSGDKT 216 (390)
T ss_pred chhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccch------hhhccccHhheeeeeeccCce-eeecCCCCc
Confidence 45668999999999999998 9999999999999888722211 124558999999999998874 899999999
Q ss_pred EEEEeC
Q 038533 332 MQLLKV 337 (337)
Q Consensus 332 i~iw~l 337 (337)
|++|++
T Consensus 217 lr~Wd~ 222 (390)
T KOG3914|consen 217 LRLWDI 222 (390)
T ss_pred EEEEec
Confidence 999985
No 297
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.6e-08 Score=80.74 Aligned_cols=85 Identities=21% Similarity=0.445 Sum_probs=72.7
Q ss_pred cceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC--CCcEEEEEcCC
Q 038533 112 EPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG--EARVFASVSAD 189 (337)
Q Consensus 112 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d 189 (337)
+....+.++. ..|.+++|+|.+..++..++.+..|+|.|+++...+..+..+ ..+++++|+ +.++++.|..+
T Consensus 184 kssq~lp~~g-----~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~n 257 (463)
T KOG1645|consen 184 KSSQILPGEG-----SFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQN 257 (463)
T ss_pred chhhcccccc-----hhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccC
Confidence 4445566665 889999999966668999999999999999999988888877 789999999 57788899999
Q ss_pred CeEEEEECCCCCC
Q 038533 190 GSVRIFDLRDKEH 202 (337)
Q Consensus 190 g~i~iwd~~~~~~ 202 (337)
|.|.+||+|..+.
T Consensus 258 G~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 258 GMVLVYDMRQPEG 270 (463)
T ss_pred ceEEEEEccCCCc
Confidence 9999999998753
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.99 E-value=1.1e-06 Score=70.78 Aligned_cols=222 Identities=16% Similarity=0.126 Sum_probs=135.5
Q ss_pred EEEEe---cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEec-CCCCcccCcCCccEEEEeCCeE
Q 038533 26 AMAVC---GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFD-PNSSSRKSSSNRHLLASSGDFL 101 (337)
Q Consensus 26 ~~~~s---~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~~~~~~~~~~l~~~~~~v 101 (337)
+..|. +.++++-.. .+.|..|+.+....... .... ...+.+. +++. ++++..+.+
T Consensus 4 gp~~d~~~g~l~~~D~~----~~~i~~~~~~~~~~~~~-------~~~~-~~G~~~~~~~g~---------l~v~~~~~~ 62 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIP----GGRIYRVDPDTGEVEVI-------DLPG-PNGMAFDRPDGR---------LYVADSGGI 62 (246)
T ss_dssp EEEEETTTTEEEEEETT----TTEEEEEETTTTEEEEE-------ESSS-EEEEEEECTTSE---------EEEEETTCE
T ss_pred ceEEECCCCEEEEEEcC----CCEEEEEECCCCeEEEE-------ecCC-CceEEEEccCCE---------EEEEEcCce
Confidence 45666 445555443 67677655544332222 1222 6777777 6765 777776677
Q ss_pred EEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCC--------CcEEEEeCCCccchhhhhccCCcee
Q 038533 102 RLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSID--------TTCTIWDIEKGVVETQLIAHDKEVY 173 (337)
Q Consensus 102 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--------g~i~v~d~~~~~~~~~~~~~~~~v~ 173 (337)
.++|..+++.+.+...... .......+++++.| ++++.++.... |.|..++.. ++... +...-...+
T Consensus 63 ~~~d~~~g~~~~~~~~~~~--~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pN 137 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDG--GVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPN 137 (246)
T ss_dssp EEEETTTTEEEEEEEEETT--CSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEE
T ss_pred EEEecCCCcEEEEeeccCC--CcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCccccc
Confidence 7779998865555554211 00115788999999 89888776543 557777776 44322 223345578
Q ss_pred EEEeC-CCcEEE-EEcCCCeEEEEECCCCCC----ceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCC
Q 038533 174 DICWG-EARVFA-SVSADGSVRIFDLRDKEH----STIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP 247 (337)
Q Consensus 174 ~~~~~-~~~~l~-~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~ 247 (337)
.++|+ +++.|+ +-+..+.|..+++..... ...+.......+..-.+++.. ++++.++....+. |.++|..
T Consensus 138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~-I~~~~p~-- 213 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGR-IVVFDPD-- 213 (246)
T ss_dssp EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTE-EEEEETT--
T ss_pred ceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCE-EEEECCC--
Confidence 99999 676554 667788999999975432 122222222223467899988 8877666555555 9999987
Q ss_pred CCCeEEeecccceeeEEEe-CCCCCCeEEEE
Q 038533 248 TLPVAELERHRACVNAIAW-APQSRRHICSV 277 (337)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~-~~~~~~~l~~~ 277 (337)
++.+..+......+++++| -|+.+.+++|.
T Consensus 214 G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 214 GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 5566666655568899999 46655355554
No 299
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.99 E-value=5.4e-10 Score=95.53 Aligned_cols=231 Identities=19% Similarity=0.279 Sum_probs=152.2
Q ss_pred CCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee-
Q 038533 70 PYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS- 146 (337)
Q Consensus 70 ~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~- 146 (337)
...+.|+++.-+.. ..+++.|.. .|.+-.+....-.-.....++. .++++++|++.+.+.||+|-
T Consensus 56 tqy~kcva~~y~~d-------~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~a-----r~Ct~lAwneLDtn~LAagld 123 (783)
T KOG1008|consen 56 TQYVKCVASFYGND-------RCILAVGSATGNISLLSVRHPHDSSAEVTPGYA-----RPCTSLAWNELDTNHLAAGLD 123 (783)
T ss_pred CCCceeehhhcCCc-------hhhhhhccccCceEEeecCCcccccceeccccc-----ccccccccccccHHHHHhhhh
Confidence 34567777654432 137777763 7777777665322233344444 89999999998888888884
Q ss_pred ---CCCcEEEEeCCCc--cchh--hhhc-cCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCce
Q 038533 147 ---IDTTCTIWDIEKG--VVET--QLIA-HDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLL 217 (337)
Q Consensus 147 ---~dg~i~v~d~~~~--~~~~--~~~~-~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~ 217 (337)
.|..+.|||+.++ .+.. .+.+ ......+++|. +.+++++|.....++++|+|.......... ...+.
T Consensus 124 khrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vq 199 (783)
T KOG1008|consen 124 KHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQ 199 (783)
T ss_pred hhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcc
Confidence 4668999999876 2221 1222 33456689999 888999999999999999995543222221 24566
Q ss_pred EEEeecCCCcEEEEEEecCCEEEEEE-CCCCCCCeEEeeccc----ceeeEEEeCCCCCCeEEEEcCC-CcEEEEeCCCC
Q 038533 218 RLAWNKQDLRYMATILMDSNKVVILD-IRSPTLPVAELERHR----ACVNAIAWAPQSRRHICSVGDD-SQAFIWELPLP 291 (337)
Q Consensus 218 ~~~~~~~~~~~l~~~~~d~~~i~i~d-~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~d-g~i~iw~~~~~ 291 (337)
.+...|..++++++.. |+. |.+|| .++-..++..+.... ..+..++|+|....++++...| ++|+++++.
T Consensus 200 G~tVdp~~~nY~cs~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~-- 275 (783)
T KOG1008|consen 200 GITVDPFSPNYFCSNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC-- 275 (783)
T ss_pred cceecCCCCCceeccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc--
Confidence 7788887888888766 777 99999 555455554443222 2489999999877678888765 689999997
Q ss_pred CCCCCCCCC--ceee------eeC---CCceeEEEEccCC
Q 038533 292 PVAGPNGID--PMSM------YSA---GSEINQLQWSPAQ 320 (337)
Q Consensus 292 ~~~~~~~~~--~~~~------~~~---~~~v~~~~~~~~~ 320 (337)
....+.... .... ..| -..|..+.||+..
T Consensus 276 ~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s 315 (783)
T KOG1008|consen 276 VVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTAS 315 (783)
T ss_pred ccCCcccccccceeeecccccccccccccceeecCcCcCC
Confidence 433221111 1111 112 2568888888765
No 300
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.96 E-value=1.5e-06 Score=74.81 Aligned_cols=255 Identities=11% Similarity=-0.026 Sum_probs=139.2
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCe-EEEecCCCCcccCcCCccEEEEeCC-eEEEEecCC
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPT-KLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGD 108 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~ 108 (337)
++.+.+++. ++.+..+|.......... .+ ...+. .... ++. .+++.+.+ .+..+|..+
T Consensus 65 ~~~v~v~~~----~g~v~a~d~~tG~~~W~~--~~----~~~~~~~p~v--~~~--------~v~v~~~~g~l~ald~~t 124 (377)
T TIGR03300 65 GGKVYAADA----DGTVVALDAETGKRLWRV--DL----DERLSGGVGA--DGG--------LVFVGTEKGEVIALDAED 124 (377)
T ss_pred CCEEEEECC----CCeEEEEEccCCcEeeee--cC----CCCcccceEE--cCC--------EEEEEcCCCEEEEEECCC
Confidence 677777775 888888765544433332 11 11111 1222 233 24444445 999999988
Q ss_pred CCccceeeecCCCCCcccCCeeE-EEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCcee-----EEEeCCCcE
Q 038533 109 SSIEPVAVLNNSKSSEFCAPLTS-FDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVY-----DICWGEARV 182 (337)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~-----~~~~~~~~~ 182 (337)
++ .+...... ..+.+ ... .+..++.+..+|.+..+|.++++.+..+........ +... .+..
T Consensus 125 G~--~~W~~~~~------~~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~~ 192 (377)
T TIGR03300 125 GK--ELWRAKLS------SEVLSPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGG 192 (377)
T ss_pred Cc--EeeeeccC------ceeecCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECCE
Confidence 84 44333321 12221 111 245677778899999999999987665543222111 1111 2457
Q ss_pred EEEEcCCCeEEEEECCCCCCceeeecCCCC-CCC------c-eEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEe
Q 038533 183 FASVSADGSVRIFDLRDKEHSTIIYESPQP-DTP------L-LRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAEL 254 (337)
Q Consensus 183 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~------i-~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~ 254 (337)
++.+..+|.+..+|.++++..-........ ... + ....+ .+..+++++.++. ++.+|.++ ++.+...
T Consensus 193 v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~-l~a~d~~t-G~~~W~~ 267 (377)
T TIGR03300 193 VLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGR-VAALDLRS-GRVLWKR 267 (377)
T ss_pred EEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCE-EEEEECCC-CcEEEee
Confidence 788888999999999888743221110000 000 0 11112 3457777788887 99999987 4444433
Q ss_pred ecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCC-CceeEEEEccCCCceEEEEcCCcEE
Q 038533 255 ERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAG-SEINQLQWSPAQPDWLAIAFSNKMQ 333 (337)
Q Consensus 255 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~ 333 (337)
.. ........ .+. .++.++.||.+..+|...++. .-...... ........ .+..+++++.+|.|.
T Consensus 268 ~~--~~~~~p~~--~~~-~vyv~~~~G~l~~~d~~tG~~-------~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~ 333 (377)
T TIGR03300 268 DA--SSYQGPAV--DDN-RLYVTDADGVVVALDRRSGSE-------LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLH 333 (377)
T ss_pred cc--CCccCceE--eCC-EEEEECCCCeEEEEECCCCcE-------EEccccccCCccccCEE--ECCEEEEEeCCCEEE
Confidence 31 11122222 344 788888899999999973321 10110001 11111122 244677778888888
Q ss_pred EEe
Q 038533 334 LLK 336 (337)
Q Consensus 334 iw~ 336 (337)
+++
T Consensus 334 ~~d 336 (377)
T TIGR03300 334 WLS 336 (377)
T ss_pred EEE
Confidence 776
No 301
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.92 E-value=1.3e-09 Score=93.17 Aligned_cols=245 Identities=19% Similarity=0.231 Sum_probs=155.6
Q ss_pred CCceeEEEEe----cceEEEeeeeccCcceEEEEEecCCCcc-eecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 21 PYPLYAMAVC----GQRIAVGSFIEDYTNRVDVVSFEPESLS-IKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 21 ~~~v~~~~~s----~~~la~g~~~~~~d~~i~i~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
...+.|++++ .-.+++|.. +|.|.+-.+...... .+. ..++..+.++++|++-.. +.||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~a----tG~I~l~s~r~~hdSs~E~----tp~~ar~Ct~lAwneLDt--------n~LA 119 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSA----TGNISLLSVRHPHDSSAEV----TPGYARPCTSLAWNELDT--------NHLA 119 (783)
T ss_pred CCCceeehhhcCCchhhhhhccc----cCceEEeecCCccccccee----cccccccccccccccccH--------HHHH
Confidence 4568888887 367888997 999999766543322 222 367889999999999765 5888
Q ss_pred EeCC------eEEEEecCCC--CccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc-chhhhh
Q 038533 96 SSGD------FLRLWDVGDS--SIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV-VETQLI 166 (337)
Q Consensus 96 ~~~~------~v~vw~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-~~~~~~ 166 (337)
+|-+ .+.|||+.+. .+.....+.+.. -....+++|-. +.+++.+|.....++++|++... ....+
T Consensus 120 agldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~----l~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~~sv- 193 (783)
T KOG1008|consen 120 AGLDKHRNDSSLKIWDINSLLTVPKESPLFSSST----LDGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSVSSV- 193 (783)
T ss_pred hhhhhhcccCCccceecccccCCCcccccccccc----ccCcccccccc-Ccchhhcccccchhhhhhhhhhhhhhhhh-
Confidence 8752 8999999876 222222333211 13455888885 88999999999999999997432 12222
Q ss_pred ccCCceeEEEeCC--CcEEEEEcCCCeEEEEE-CCCCCCceeeecC--CCCCCCceEEEeecCCCcEEEEEEecCCEEEE
Q 038533 167 AHDKEVYDICWGE--ARVFASVSADGSVRIFD-LRDKEHSTIIYES--PQPDTPLLRLAWNKQDLRYMATILMDSNKVVI 241 (337)
Q Consensus 167 ~~~~~v~~~~~~~--~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i 241 (337)
....+..+...| ++++++-. ||.|.+|| .++-+........ ......+..++|+|.....+++...|...|++
T Consensus 194 -nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrl 271 (783)
T KOG1008|consen 194 -NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRL 271 (783)
T ss_pred -hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEE
Confidence 223455566663 66766655 99999999 4444432222111 11123589999999777788888888888999
Q ss_pred EECCCCCCC-------eEE------eecc--cceeeEEEeCCCCC-CeEEEEcCCCcEEEEeCC
Q 038533 242 LDIRSPTLP-------VAE------LERH--RACVNAIAWAPQSR-RHICSVGDDSQAFIWELP 289 (337)
Q Consensus 242 ~d~~~~~~~-------~~~------~~~~--~~~v~~~~~~~~~~-~~l~~~~~dg~i~iw~~~ 289 (337)
+|+..-..+ ... ++.. -..|.+..|++..+ ....++...-++.-+++.
T Consensus 272 ydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 272 YDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH 335 (783)
T ss_pred ecccccCCcccccccceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence 998743211 000 1111 24677788887652 134444444445545444
No 302
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.91 E-value=2.4e-06 Score=79.03 Aligned_cols=244 Identities=16% Similarity=0.251 Sum_probs=147.9
Q ss_pred CCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC
Q 038533 21 PYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG 98 (337)
Q Consensus 21 ~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~ 98 (337)
++.|.++.|. +.-++++.. .|.|.+- +.++..... ...-...|.+++|+||.. +++...
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~----~G~iilv--d~et~~~ei----vg~vd~GI~aaswS~Dee---------~l~liT 128 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITA----LGDIILV--DPETLELEI----VGNVDNGISAASWSPDEE---------LLALIT 128 (1265)
T ss_pred CcceEEEEEecccceEEEEec----CCcEEEE--cccccceee----eeeccCceEEEeecCCCc---------EEEEEe
Confidence 3589999998 777777776 8999995 444444443 134567899999999998 766555
Q ss_pred C--eEEEEec----CCCC-----------------ccceeeecCCCC----------------CcccCCeeEEEeecCCC
Q 038533 99 D--FLRLWDV----GDSS-----------------IEPVAVLNNSKS----------------SEFCAPLTSFDWNEIEP 139 (337)
Q Consensus 99 ~--~v~vw~~----~~~~-----------------~~~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~ 139 (337)
+ ++.+-.- -..+ .+....+.+... ....+.=+.+.|-- +|
T Consensus 129 ~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg 207 (1265)
T KOG1920|consen 129 GRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DG 207 (1265)
T ss_pred CCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CC
Confidence 3 4433221 0000 011111221110 00112234589987 99
Q ss_pred CeEEEe-----eCCCcEEEEeCCCccchhhhhccCCceeEEEeCC-CcEEEEEc---CCCeEEEEECCCCCCceeeecCC
Q 038533 140 KRIGTC-----SIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGE-ARVFASVS---ADGSVRIFDLRDKEHSTIIYESP 210 (337)
Q Consensus 140 ~~l~~~-----~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~ 210 (337)
+++++. .....|++||-+ |..-..-....+.=.+++|-| |.++++-. .|+.|.+|.-+..+........+
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p 286 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP 286 (1265)
T ss_pred cEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc
Confidence 999984 233789999976 443222222333446788884 77777643 45679999877666554544454
Q ss_pred CCCCCceEEEeecCCCcEEEE---EEecCCEEEEEECCCCCCCeE-EeecccceeeEEEeCCCCCCeEEEEcCCCcEEEE
Q 038533 211 QPDTPLLRLAWNKQDLRYMAT---ILMDSNKVVILDIRSPTLPVA-ELERHRACVNAIAWAPQSRRHICSVGDDSQAFIW 286 (337)
Q Consensus 211 ~~~~~i~~~~~~~~~~~~l~~---~~~d~~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 286 (337)
.....+..++|+. ++..|++ ...... |++|-+.+..-.++ .+.-..... +.|+|....-|..-..+|...++
T Consensus 287 ~de~~ve~L~Wns-~sdiLAv~~~~~e~~~-v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~ 362 (1265)
T KOG1920|consen 287 LDEKEVEELAWNS-NSDILAVVTSNLENSL-VQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVR 362 (1265)
T ss_pred ccccchheeeecC-CCCceeeeecccccce-EEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEE
Confidence 4555699999998 8898888 334444 99999877432222 222222222 88999766555555577877776
Q ss_pred eCC
Q 038533 287 ELP 289 (337)
Q Consensus 287 ~~~ 289 (337)
++.
T Consensus 363 ~~~ 365 (1265)
T KOG1920|consen 363 DFA 365 (1265)
T ss_pred EEE
Confidence 665
No 303
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=7.9e-09 Score=82.11 Aligned_cols=149 Identities=13% Similarity=0.136 Sum_probs=107.4
Q ss_pred EEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc-----chhhhh
Q 038533 93 LLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV-----VETQLI 166 (337)
Q Consensus 93 ~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~ 166 (337)
.+++|.+ .|-+-|+.++ ....|. .+ +.|.++.|.. .++++..|..+|.|..+|++.+. +...+
T Consensus 227 hfs~G~sqqv~L~nvetg---~~qsf~-sk-----sDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl- 295 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETG---HQQSFQ-SK-----SDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL- 295 (425)
T ss_pred eecccccceeEEEEeecc---cccccc-cc-----hhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEE-
Confidence 4556666 8888888887 233343 33 7899999987 88999999999999999998752 33333
Q ss_pred ccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCCCCCceee--ecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEE
Q 038533 167 AHDKEVYDICWG--EARVFASVSADGSVRIFDLRDKEHSTII--YESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVIL 242 (337)
Q Consensus 167 ~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~ 242 (337)
-|...|+++... ++.+|++.+.+|+|++||+|.-++...+ ++.+.....-.-+...+ ....+++++.|.. .+||
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcy-tRiW 373 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCY-TRIW 373 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeE-EEEE
Confidence 388889998877 5888999999999999999987763333 33322222223344455 6667777888887 9999
Q ss_pred ECCCCCCCeEEee
Q 038533 243 DIRSPTLPVAELE 255 (337)
Q Consensus 243 d~~~~~~~~~~~~ 255 (337)
.++. +.++.+++
T Consensus 374 sl~~-ghLl~tip 385 (425)
T KOG2695|consen 374 SLDS-GHLLCTIP 385 (425)
T ss_pred eccc-CceeeccC
Confidence 9997 55565554
No 304
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=2.3e-06 Score=74.07 Aligned_cols=192 Identities=11% Similarity=-0.017 Sum_probs=112.6
Q ss_pred CceeEEEEe--cce-EEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC
Q 038533 22 YPLYAMAVC--GQR-IAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG 98 (337)
Q Consensus 22 ~~v~~~~~s--~~~-la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~ 98 (337)
+....-.|+ |+. ++..+.. +.+..|.++++ .+++... .....+......|+||++ .++.+.+
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~-~~~~~Iyv~dl--~tg~~~~----lt~~~g~~~~~~~SPDG~--------~la~~~~ 252 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYG-ERKPTLYKYNL--YTGKKEK----IASSQGMLVVSDVSKDGS--------KLLLTMA 252 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEcc-CCCCEEEEEEC--CCCcEEE----EecCCCcEEeeEECCCCC--------EEEEEEc
Confidence 366788899 664 6665641 11344555554 3433332 123445566788999998 3444443
Q ss_pred ---C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC-CC--cEEEEeCCCccchhhhhccCCc
Q 038533 99 ---D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI-DT--TCTIWDIEKGVVETQLIAHDKE 171 (337)
Q Consensus 99 ---~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-dg--~i~v~d~~~~~~~~~~~~~~~~ 171 (337)
+ .|.++++.+++.+ .+..+. .......|+| +++.|+-.+. .+ .|.+.|+.+++..+.... ..
T Consensus 253 ~~g~~~Iy~~dl~~g~~~---~LT~~~-----~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~- 321 (419)
T PRK04043 253 PKGQPDIYLYDTNTKTLT---QITNYP-----GIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK- 321 (419)
T ss_pred cCCCcEEEEEECCCCcEE---EcccCC-----CccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC-
Confidence 2 8888898887432 233222 2233457999 8876666553 33 578888887765332221 11
Q ss_pred eeEEEeC-CCcEEEEEcCC---------CeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC--EE
Q 038533 172 VYDICWG-EARVFASVSAD---------GSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN--KV 239 (337)
Q Consensus 172 v~~~~~~-~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~--~i 239 (337)
....|+ +++.++..... ..|.+.|+.++... .+... .......|+| +++.++.....+. .+
T Consensus 322 -~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~----~~~~~p~~SP-DG~~I~f~~~~~~~~~L 394 (419)
T PRK04043 322 -NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN----GVNQFPRFSS-DGGSIMFIKYLGNQSAL 394 (419)
T ss_pred -cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC----CCcCCeEECC-CCCEEEEEEccCCcEEE
Confidence 124889 78877766543 36888898877632 22222 2233588999 8888777665543 25
Q ss_pred EEEECCC
Q 038533 240 VILDIRS 246 (337)
Q Consensus 240 ~i~d~~~ 246 (337)
.+.++..
T Consensus 395 ~~~~l~g 401 (419)
T PRK04043 395 GIIRLNY 401 (419)
T ss_pred EEEecCC
Confidence 5666643
No 305
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.85 E-value=1.1e-07 Score=84.94 Aligned_cols=187 Identities=11% Similarity=0.069 Sum_probs=136.6
Q ss_pred CCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCce
Q 038533 138 EPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLL 217 (337)
Q Consensus 138 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~ 217 (337)
++..++.|+....+..+|+++.+..+...-..+.+.-++. +++.+.+|...|+|.+-|.++.+....+. .|.+.+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~-Nnr~lf~G~t~G~V~LrD~~s~~~iht~~---aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY-NNRNLFCGDTRGTVFLRDPNSFETIHTFD---AHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe-cCcEEEeecccceEEeecCCcCceeeeee---cccccee
Confidence 4567888888888999999988866655544444665555 47899999999999999999888655543 4677888
Q ss_pred EEEeecCCCcEEEEEEecCC--------EEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 218 RLAWNKQDLRYMATILMDSN--------KVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 218 ~~~~~~~~~~~l~~~~~d~~--------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
.+.. .|+.|+++|.... -|+|||+|+.+. +.-+.-+.++ .-+.|+|.-...+++++..|...+-|..
T Consensus 222 DfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 222 DFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred eeec---cCCeEEEeecccccccccccchhhhhhhhhhhc-cCCcccccCc-hhhhhcccccceEEEEecccceeecccc
Confidence 7766 7899999886543 188999998543 3333333333 5678999877789999999999999955
Q ss_pred CCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 290 LPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
++..|.. ...........+..+++++++..++.+..+|.|.+|.
T Consensus 297 --~lsNP~~-~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 297 --TLSNPPA-GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred --ccCCCcc-ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 4333211 1122333445599999999999888899999999994
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=8.8e-08 Score=78.91 Aligned_cols=202 Identities=18% Similarity=0.175 Sum_probs=143.0
Q ss_pred CCeeEEEeecCCCCeEEEeeCCCcEEEEeCCC---ccchhhhhccCCceeEEEeC-CCcEEEEEcC-CCeEEEEECCCCC
Q 038533 127 APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEK---GVVETQLIAHDKEVYDICWG-EARVFASVSA-DGSVRIFDLRDKE 201 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~---~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~i~iwd~~~~~ 201 (337)
+.|+.+.-. ..+++.+++.||.++.|.-.. -+.+..+..|...|.+++.+ ++.++.+++. |..++++|+.+-.
T Consensus 10 d~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 10 DVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 667666553 578999999999999997543 23556677899999999999 8999999777 9999999998776
Q ss_pred CceeeecCCCCCCCceEEEeecCCC---cEEEEEEecCCEEEEEECCCCCCC-eEEeecccceeeEEEeCCCCCCeEEEE
Q 038533 202 HSTIIYESPQPDTPLLRLAWNKQDL---RYMATILMDSNKVVILDIRSPTLP-VAELERHRACVNAIAWAPQSRRHICSV 277 (337)
Q Consensus 202 ~~~~~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~d~~~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~ 277 (337)
....+... ..--.+.|....+ ..+++...+...+.++|-+....+ ...-.-|..+|.++.+.|-+. .+++.
T Consensus 88 minmiKL~----~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~vSi 162 (558)
T KOG0882|consen 88 MINMIKLV----DLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SAVSI 162 (558)
T ss_pred hhhhcccc----cCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ceeec
Confidence 54333222 1112233322122 145555555445999999875533 334456889999999999998 89999
Q ss_pred cCCCcEEEEeCCCCCCCCCCC---------CCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 278 GDDSQAFIWELPLPPVAGPNG---------IDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 278 ~~dg~i~iw~~~~~~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
...|.|.-|..+. ....|.. ...+..........++.|+|++..+.+.+.|.+|+++.
T Consensus 163 D~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~ 229 (558)
T KOG0882|consen 163 DISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFV 229 (558)
T ss_pred cccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEE
Confidence 9999999999883 1111111 11122333456789999999999999999999999886
No 307
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=3.8e-07 Score=80.52 Aligned_cols=185 Identities=17% Similarity=0.217 Sum_probs=127.1
Q ss_pred CCceeEEEEecceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC-
Q 038533 21 PYPLYAMAVCGQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD- 99 (337)
Q Consensus 21 ~~~v~~~~~s~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~- 99 (337)
.+.++|++++++.||.|+. +|.+++++.+... .. .+.|... ..+|. ++++|++
T Consensus 39 ~D~is~~av~~~~~~~GtH----~g~v~~~~~~~~~--~~-----~~~~s~~------~~~Ge---------y~asCS~D 92 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTH----RGAVYLTTCQGNP--KT-----NFDHSSS------ILEGE---------YVASCSDD 92 (846)
T ss_pred hhHHHHHHhhcceeeeccc----cceEEEEecCCcc--cc-----ccccccc------ccCCc---------eEEEecCC
Confidence 4678999999999999998 9999997776543 11 1455544 45666 9999994
Q ss_pred -eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecC----CCCeEEEeeCCCcEEEEeCCC--ccchhhhhccCCce
Q 038533 100 -FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEI----EPKRIGTCSIDTTCTIWDIEK--GVVETQLIAHDKEV 172 (337)
Q Consensus 100 -~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~dg~i~v~d~~~--~~~~~~~~~~~~~v 172 (337)
+|.|-.+.+.+ ....+.-+ .++.+++++|. ..+.+++|+.-| +.++.-+= .+.-..+....++|
T Consensus 93 Gkv~I~sl~~~~--~~~~~df~------rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 93 GKVVIGSLFTDD--EITQYDFK------RPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPI 163 (846)
T ss_pred CcEEEeeccCCc--cceeEecC------CcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccce
Confidence 89999998884 33333333 68999999993 256899999888 77765221 11111344567899
Q ss_pred eEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCC---CCCCceEEEeecCCCcEEEEEEecCCEEEEEECCC
Q 038533 173 YDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQ---PDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRS 246 (337)
Q Consensus 173 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~ 246 (337)
.++.|. ++++|=++.+| |++||+.+.+....+..... .+.--..+.|.+ ...|+.| ...+ |++..++.
T Consensus 164 ~~i~W~-g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~--~~~LVIG-W~d~-v~i~~I~~ 234 (846)
T KOG2066|consen 164 HSIKWR-GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD--EDRLVIG-WGDS-VKICSIKK 234 (846)
T ss_pred EEEEec-CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecC--CCeEEEe-cCCe-EEEEEEec
Confidence 999996 78888888776 89999998876555433311 112345678864 4445444 3334 88888873
No 308
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=6.4e-09 Score=92.38 Aligned_cols=216 Identities=12% Similarity=0.105 Sum_probs=146.9
Q ss_pred cceeeee-CCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcC
Q 038533 13 ENSVTHE-SPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSS 89 (337)
Q Consensus 13 ~~~~~~~-~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~ 89 (337)
++..+|. +....+|++|+ .+.|++|+. .|.|++|+......+-.. ..|..+|+.+.-+.++.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~----~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~dgs------ 1156 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSH----AGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSVDGS------ 1156 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeec----cceEEEEEccCccccccc-----cccccccccccccCCcc------
Confidence 3444443 35678999999 889999998 999999998877666554 78999999999999998
Q ss_pred CccEEEEeC---C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhh
Q 038533 90 NRHLLASSG---D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQL 165 (337)
Q Consensus 90 ~~~~l~~~~---~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~ 165 (337)
.+.+.+ . ...+|++..- ......+.+ -.++.|+. ....-+.|.......+||++++.++.++
T Consensus 1157 ---~~Ltsss~S~PlsaLW~~~s~-~~~~Hsf~e---------d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1157 ---TQLTSSSSSSPLSALWDASST-GGPRHSFDE---------DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred ---eeeeeccccCchHHHhccccc-cCccccccc---------cceeehhh-hHHHHHhcccccceEEEecccCcHHHHh
Confidence 544433 2 7889998763 245555554 34788886 4455555666678999999999877764
Q ss_pred h----ccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEE
Q 038533 166 I----AHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI 241 (337)
Q Consensus 166 ~----~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i 241 (337)
- +....-+...|+|...|+. .|| .+||.|..+.+..+... ..-..=.|+| .|..++.- -.|
T Consensus 1223 lt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~aIh~FD~f----t~~~~G~FHP-~g~eVIIN------SEI 1287 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPEAIHRFDQF----TDYGGGGFHP-SGNEVIIN------SEI 1287 (1516)
T ss_pred cCcchhhhhhccccccCCCcceEe--eCc--eeeeeccHHHHhhhhhh----eecccccccC-CCceEEee------chh
Confidence 3 1222336777886444443 355 37999988765555433 1122335899 77777763 458
Q ss_pred EECCCCCCCeEEeecccceeeEEEeCCCCCCeEEE
Q 038533 242 LDIRSPTLPVAELERHRACVNAIAWAPQSRRHICS 276 (337)
Q Consensus 242 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 276 (337)
||+|+ .+.++....- .-..+.|+..|. ++..
T Consensus 1288 wD~RT-F~lLh~VP~L--dqc~VtFNstG~-VmYa 1318 (1516)
T KOG1832|consen 1288 WDMRT-FKLLHSVPSL--DQCAVTFNSTGD-VMYA 1318 (1516)
T ss_pred hhhHH-HHHHhcCccc--cceEEEeccCcc-chhh
Confidence 99998 4455544422 235678888887 4433
No 309
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.80 E-value=1.1e-08 Score=56.36 Aligned_cols=38 Identities=26% Similarity=0.605 Sum_probs=35.4
Q ss_pred CCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEe
Q 038533 249 LPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWE 287 (337)
Q Consensus 249 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 287 (337)
+++.++.+|...|++++|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 35778999999999999999998 999999999999997
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.80 E-value=1.7e-05 Score=63.96 Aligned_cols=231 Identities=10% Similarity=0.050 Sum_probs=142.8
Q ss_pred CCCCeEEEecCCCCcccCcCCccEEEEeCC---eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee
Q 038533 70 PYPPTKLMFDPNSSSRKSSSNRHLLASSGD---FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS 146 (337)
Q Consensus 70 ~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 146 (337)
......++.+|... ..++.+-. ...+||..+++ ....+......-+ --.-.|++ ++++|++.-
T Consensus 4 P~RgH~~a~~p~~~--------~avafaRRPG~~~~v~D~~~g~--~~~~~~a~~gRHF---yGHg~fs~-dG~~LytTE 69 (305)
T PF07433_consen 4 PARGHGVAAHPTRP--------EAVAFARRPGTFALVFDCRTGQ--LLQRLWAPPGRHF---YGHGVFSP-DGRLLYTTE 69 (305)
T ss_pred CccccceeeCCCCC--------eEEEEEeCCCcEEEEEEcCCCc--eeeEEcCCCCCEE---ecCEEEcC-CCCEEEEec
Confidence 34567788999665 46777763 89999999984 4444443221111 11357888 999998873
Q ss_pred -----CCCcEEEEeCC-CccchhhhhccCCceeEEEeC-CCcEEEEEcC------------------CCeEEEEECCCCC
Q 038533 147 -----IDTTCTIWDIE-KGVVETQLIAHDKEVYDICWG-EARVFASVSA------------------DGSVRIFDLRDKE 201 (337)
Q Consensus 147 -----~dg~i~v~d~~-~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~------------------dg~i~iwd~~~~~ 201 (337)
..|.|-|||.. +-+.+.++..|.-....+.+. +++.|+++.. +..+...|.++++
T Consensus 70 nd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ 149 (305)
T PF07433_consen 70 NDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA 149 (305)
T ss_pred cccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc
Confidence 35789999998 556667777776666778888 6666666532 2345566666666
Q ss_pred Cceeeec-CCCCCCCceEEEeecCCCcEEEEEEecCC------EEEEEECCCCCCCeEEe-------ecccceeeEEEeC
Q 038533 202 HSTIIYE-SPQPDTPLLRLAWNKQDLRYMATILMDSN------KVVILDIRSPTLPVAEL-------ERHRACVNAIAWA 267 (337)
Q Consensus 202 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~d~~------~i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~ 267 (337)
....... ...|...|..+++.+ ++..++..-..+. .|.+++... .+..+ ......+-+|+++
T Consensus 150 ll~q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~ 225 (305)
T PF07433_consen 150 LLEQVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAAD 225 (305)
T ss_pred eeeeeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEe
Confidence 4444322 123667899999988 7766665544432 244444332 12222 2234688999999
Q ss_pred CCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEc
Q 038533 268 PQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAF 328 (337)
Q Consensus 268 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 328 (337)
+++..+.+|+-.-|.+.+||...+.+. ....-..+..++-.+++ ++++.+.
T Consensus 226 ~~g~~ia~tsPrGg~~~~~d~~tg~~~---------~~~~l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 226 RDGRLIAVTSPRGGRVAVWDAATGRLL---------GSVPLPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCEe---------eccccCceeeeeecCCc-eEEeCCC
Confidence 999834456667889999999833311 11122345666666666 4444443
No 311
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=1.4e-06 Score=77.66 Aligned_cols=111 Identities=17% Similarity=0.290 Sum_probs=83.9
Q ss_pred ceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC-
Q 038533 23 PLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD- 99 (337)
Q Consensus 23 ~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~- 99 (337)
.-+-.+|+ ..++|+++......|+|.||- +... +... ...+-.+++++|+|..- +|+.|.+
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGE-Pqr~-----Vt~P~hatSLCWHpe~~---------vLa~gwe~ 80 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGE-PQRD-----VTYPVHATSLCWHPEEF---------VLAQGWEM 80 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCC-CCcc-----cccceehhhhccChHHH---------HHhhcccc
Confidence 34445777 789999988666789999973 3222 2111 22233456799999987 8999886
Q ss_pred -eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCC
Q 038533 100 -FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIE 157 (337)
Q Consensus 100 -~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~ 157 (337)
.+.+|...+. +.......|. .+|..+.||+ +|+.++++..-|.+.+|...
T Consensus 81 g~~~v~~~~~~--e~htv~~th~-----a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 81 GVSDVQKTNTT--ETHTVVETHP-----APIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ceeEEEecCCc--eeeeeccCCC-----CCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 9999998877 4445555677 9999999999 99999999999999999865
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.79 E-value=1.2e-05 Score=69.25 Aligned_cols=144 Identities=15% Similarity=0.284 Sum_probs=95.4
Q ss_pred ceeEEEeC--CCcEEEEEc----CCCe----EEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEE
Q 038533 171 EVYDICWG--EARVFASVS----ADGS----VRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVV 240 (337)
Q Consensus 171 ~v~~~~~~--~~~~l~~~~----~dg~----i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~ 240 (337)
...++.|+ .++.+.+.. .+|. -++|+....+........-..+..+.+++++| +...|+.|+.||. |.
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgS-ii 284 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGS-II 284 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCe-EE
Confidence 34566666 344444432 2333 34677765543333222223567899999999 9999999999999 99
Q ss_pred EEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCC-CCC-----ce---eeeeCCCce
Q 038533 241 ILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPN-GID-----PM---SMYSAGSEI 311 (337)
Q Consensus 241 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~-----~~---~~~~~~~~v 311 (337)
+||.... +.......-.++.++|+|+|. ++++|+..|.+.+||+......-.. .++ .+ ....+...+
T Consensus 285 LyD~~~~---~t~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L 360 (545)
T PF11768_consen 285 LYDTTRG---VTLLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSL 360 (545)
T ss_pred EEEcCCC---eeeeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchh
Confidence 9998763 233333455678999999999 9999999999999999754433110 111 11 223456678
Q ss_pred eEEEEccCC
Q 038533 312 NQLQWSPAQ 320 (337)
Q Consensus 312 ~~~~~~~~~ 320 (337)
..+.|.+..
T Consensus 361 ~~iqW~~~~ 369 (545)
T PF11768_consen 361 VHIQWAPAP 369 (545)
T ss_pred heeEeccCC
Confidence 888998543
No 313
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.77 E-value=2.7e-06 Score=74.30 Aligned_cols=200 Identities=7% Similarity=0.051 Sum_probs=116.1
Q ss_pred eEEEEecceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEE
Q 038533 25 YAMAVCGQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLR 102 (337)
Q Consensus 25 ~~~~~s~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~ 102 (337)
+|++-++++|+.|+. .|.+.+|+-......... ..+..+.+..+..+++.. ++|.|++ .|.
T Consensus 39 Tc~dst~~~l~~GsS----~G~lyl~~R~~~~~~~~~----~~~~~~~~~~~~vs~~e~---------lvAagt~~g~V~ 101 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSS----AGSVYLYNRHTGEMRKLK----NEGATGITCVRSVSSVEY---------LVAAGTASGRVS 101 (726)
T ss_pred EEeecCCceEEEecc----cceEEEEecCchhhhccc----ccCccceEEEEEecchhH---------hhhhhcCCceEE
Confidence 333333999999997 999999765543333222 122445566677788776 8888775 899
Q ss_pred EEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc----chhhhhccCCceeEEEeC
Q 038533 103 LWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV----VETQLIAHDKEVYDICWG 178 (337)
Q Consensus 103 vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~----~~~~~~~~~~~v~~~~~~ 178 (337)
++.++........ +-.+.+..+...|++++|++ ++..+.+|...|.|..-.+.... ....+....+.|..+...
T Consensus 102 v~ql~~~~p~~~~-~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 102 VFQLNKELPRDLD-YVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred eehhhccCCCcce-eeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 9988775322222 22222222337899999998 99999999999999999887621 112222345667666666
Q ss_pred CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCC-CceEEEeecC---CCcEEEEEEecCCEEEEEECCCCCC
Q 038533 179 EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDT-PLLRLAWNKQ---DLRYMATILMDSNKVVILDIRSPTL 249 (337)
Q Consensus 179 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~i~~~~~~~~---~~~~l~~~~~d~~~i~i~d~~~~~~ 249 (337)
...+|++... ...+++++.... ..+-.. ..++ .-...+|-|. ...-++.++.-| .++|...-.+.
T Consensus 180 q~~LLVStl~--r~~Lc~tE~eti-~QIG~k-~R~~~~~~GACF~~g~~~~q~~~IycaRPG--~RlWead~~G~ 248 (726)
T KOG3621|consen 180 QSYLLVSTLT--RCILCQTEAETI-TQIGKK-PRKSLIDFGACFFPGQCKAQKPQIYCARPG--LRLWEADFAGE 248 (726)
T ss_pred cceehHhhhh--hhheeecchhHH-HHhcCC-CcCCccccceEEeeccccCCCceEEEecCC--CceEEeeccee
Confidence 5555554443 233556554431 111111 1111 1344556552 133444445444 77886654343
No 314
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.75 E-value=4.3e-08 Score=53.92 Aligned_cols=38 Identities=21% Similarity=0.479 Sum_probs=35.4
Q ss_pred cceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEe
Q 038533 112 EPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWD 155 (337)
Q Consensus 112 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d 155 (337)
+++..+.+|. .+|.+++|+| ++++|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~-----~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHS-----SSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSS-----SSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCC-----CcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 4678899998 9999999999 899999999999999997
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.75 E-value=9.5e-06 Score=69.84 Aligned_cols=134 Identities=13% Similarity=0.178 Sum_probs=94.2
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee----CCCc----EEEEeCCCccch----hhhhc
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS----IDTT----CTIWDIEKGVVE----TQLIA 167 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~----~dg~----i~v~d~~~~~~~----~~~~~ 167 (337)
.+.++.+..++.+.+...... ....++.|+-.+++.+.+.. .+|. -.+|++...+.. ..+ .
T Consensus 185 Nl~L~~~~~~klEvL~yirTE------~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-p 257 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTE------NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-P 257 (545)
T ss_pred cEEEEEecCCcEEEEEEEEec------CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-e
Confidence 677777777666655555543 23357888865666666653 3443 345665444321 112 4
Q ss_pred cCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCC
Q 038533 168 HDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRS 246 (337)
Q Consensus 168 ~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~ 246 (337)
....+.+++++ +.+.|+.|+.||.|.+||...+...... ..-....++|+| ++.++++|+..|. +.+||+.-
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k-----a~~~P~~iaWHp-~gai~~V~s~qGe-lQ~FD~AL 330 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK-----AEFIPTLIAWHP-DGAIFVVGSEQGE-LQCFDMAL 330 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee-----ecccceEEEEcC-CCcEEEEEcCCce-EEEEEeec
Confidence 67789999999 7899999999999999999876432221 235678999999 9999999999998 99999875
Q ss_pred C
Q 038533 247 P 247 (337)
Q Consensus 247 ~ 247 (337)
.
T Consensus 331 s 331 (545)
T PF11768_consen 331 S 331 (545)
T ss_pred C
Confidence 3
No 316
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3e-07 Score=75.86 Aligned_cols=247 Identities=12% Similarity=0.025 Sum_probs=165.5
Q ss_pred eeeCCCceeEEEEe-cceEEEeeeeccCcceEEEEEecC-CCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEE
Q 038533 17 THESPYPLYAMAVC-GQRIAVGSFIEDYTNRVDVVSFEP-ESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLL 94 (337)
Q Consensus 17 ~~~~~~~v~~~~~s-~~~la~g~~~~~~d~~i~i~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l 94 (337)
+|-|.+.|+-+.-. .+++.+++. ||.++.|.-.. ...++.. . ...|...|.+++.+-++. ++
T Consensus 5 symhrd~i~hv~~tka~fiiqASl----DGh~KFWkKs~isGvEfVK--h-FraHL~~I~sl~~S~dg~---------L~ 68 (558)
T KOG0882|consen 5 SYMHRDVITHVFPTKAKFIIQASL----DGHKKFWKKSRISGVEFVK--H-FRAHLGVILSLAVSYDGW---------LF 68 (558)
T ss_pred hhcccceeeeEeeehhheEEeeec----chhhhhcCCCCccceeehh--h-hHHHHHHHHhhhccccce---------eE
Confidence 46677888888888 999999997 99999986554 2223332 1 257888899999999998 88
Q ss_pred EEeC--C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCC--CeEEEeeCCCcEEEEeCCCcc--chhhhhc
Q 038533 95 ASSG--D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEP--KRIGTCSIDTTCTIWDIEKGV--VETQLIA 167 (337)
Q Consensus 95 ~~~~--~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~l~~~~~dg~i~v~d~~~~~--~~~~~~~ 167 (337)
.+.+ | .++++|+.+-.......+..-. +.+ ++..++.+. .+-++.-.+|.+.++|-.... ....-.-
T Consensus 69 ~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP-----g~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl 142 (558)
T KOG0882|consen 69 RSVEDPDHSVKVFDVENFDMINMIKLVDLP-----GFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL 142 (558)
T ss_pred eeccCcccceeEEEeeccchhhhcccccCC-----Cce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccc
Confidence 8866 4 9999999876432222222111 222 222232111 223333468899999976543 2233346
Q ss_pred cCCceeEEEeC-CCcEEEEEcCCCeEEEEECCC-CC-----------CceeeecCCCCCCCceEEEeecCCCcEEEEEEe
Q 038533 168 HDKEVYDICWG-EARVFASVSADGSVRIFDLRD-KE-----------HSTIIYESPQPDTPLLRLAWNKQDLRYMATILM 234 (337)
Q Consensus 168 ~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~-~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 234 (337)
|..+|..+.++ -++.+++....|.|.-|.... -+ ....++..+..+....++.|+| ++..+.+-+.
T Consensus 143 H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~ 221 (558)
T KOG0882|consen 143 HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNP 221 (558)
T ss_pred ccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCc
Confidence 89999999999 688899999999999999873 11 1112233334456788999999 9999999998
Q ss_pred cCCEEEEEECCCCCCCeEEee--------------------------------ccc-ceeeEEEeCCCCCCeEEEEcCCC
Q 038533 235 DSNKVVILDIRSPTLPVAELE--------------------------------RHR-ACVNAIAWAPQSRRHICSVGDDS 281 (337)
Q Consensus 235 d~~~i~i~d~~~~~~~~~~~~--------------------------------~~~-~~v~~~~~~~~~~~~l~~~~~dg 281 (337)
|.. |++++.+++ ..++.+. .|. ..-+.+.|...++ +|+-|+-=|
T Consensus 222 Drk-VR~F~~KtG-klvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~-flly~t~~g 298 (558)
T KOG0882|consen 222 DRK-VRGFVFKTG-KLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGN-FLLYGTILG 298 (558)
T ss_pred ccE-EEEEEeccc-hhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCC-EEEeeccee
Confidence 887 999998873 2222211 111 1335678888888 887777544
Q ss_pred cEEEEeCCC
Q 038533 282 QAFIWELPL 290 (337)
Q Consensus 282 ~i~iw~~~~ 290 (337)
|++.++..
T Consensus 299 -ikvin~~t 306 (558)
T KOG0882|consen 299 -IKVINLDT 306 (558)
T ss_pred -EEEEEeec
Confidence 77777763
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.74 E-value=8.3e-06 Score=75.62 Aligned_cols=238 Identities=14% Similarity=0.186 Sum_probs=134.5
Q ss_pred CCCCCeEEEecCCCCcccCcCCccEEEEeC-CeEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC
Q 038533 69 HPYPPTKLMFDPNSSSRKSSSNRHLLASSG-DFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI 147 (337)
Q Consensus 69 ~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 147 (337)
-.+.|.++.|..+.. .+++.-. +.|.+-|..+...+...... ..|.+++|+| +.+.++..+.
T Consensus 67 gd~~i~s~~fl~d~~--------~i~v~~~~G~iilvd~et~~~eivg~vd--------~GI~aaswS~-Dee~l~liT~ 129 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTN--------SICVITALGDIILVDPETLELEIVGNVD--------NGISAASWSP-DEELLALITG 129 (1265)
T ss_pred CCcceEEEEEecccc--------eEEEEecCCcEEEEcccccceeeeeecc--------CceEEEeecC-CCcEEEEEeC
Confidence 346899999988776 3444433 46666688877554444443 6799999999 9999999888
Q ss_pred CCcEEEEeCCCccchhhhhc-----cCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEee
Q 038533 148 DTTCTIWDIEKGVVETQLIA-----HDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWN 222 (337)
Q Consensus 148 dg~i~v~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~ 222 (337)
.+++.+-+ .+-.++....- ..+....+-|-....-+-|+ .|.....+..... ...........=.++.|.
T Consensus 130 ~~tll~mT-~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~e---k~~~~~~~~~~~~~IsWR 204 (1265)
T KOG1920|consen 130 RQTLLFMT-KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKE---KALEQIEQDDHKTSISWR 204 (1265)
T ss_pred CcEEEEEe-ccccchhccccccccccccccceecccccceeeecc-hhhhccccccccc---ccccchhhccCCceEEEc
Confidence 77776654 23332222111 11222333343111111111 1222111111111 101100112344679998
Q ss_pred cCCCcEEEEEE---ecC-CEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEc---CCCcEEEEeCCCCCCCC
Q 038533 223 KQDLRYMATIL---MDS-NKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVG---DDSQAFIWELPLPPVAG 295 (337)
Q Consensus 223 ~~~~~~l~~~~---~d~-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~ 295 (337)
- +|.++++.. ..+ ..|++||.. +.+-..-....+.-.+++|-|.|. ++++-. .|+.|.+|.-+ .+..
T Consensus 205 g-Dg~~fAVs~~~~~~~~RkirV~drE--g~Lns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErN--GL~h 278 (1265)
T KOG1920|consen 205 G-DGEYFAVSFVESETGTRKIRVYDRE--GALNSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERN--GLRH 278 (1265)
T ss_pred c-CCcEEEEEEEeccCCceeEEEeccc--chhhcccCcccccccceeecCCCC-eEeeeeecCCCCcEEEEecC--Cccc
Confidence 7 999998833 222 349999977 221111122233446799999998 777754 46689999887 4332
Q ss_pred CCCCCceeeeeCCCceeEEEEccCCCceEE---EEcCCcEEEEe
Q 038533 296 PNGIDPMSMYSAGSEINQLQWSPAQPDWLA---IAFSNKMQLLK 336 (337)
Q Consensus 296 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~~~d~~i~iw~ 336 (337)
+...........++..++|+.++..|+. ......|++|-
T Consensus 279 --g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 279 --GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred --cccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 2222222233445999999999977665 33455699995
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=3e-08 Score=88.30 Aligned_cols=158 Identities=13% Similarity=0.236 Sum_probs=112.4
Q ss_pred cceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCC
Q 038533 112 EPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADG 190 (337)
Q Consensus 112 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg 190 (337)
+..+.+..|. ...+|++|+. ..+.|+.|+..|.|+++++.+|.......+|..+|+-+.-+ ++..+++.+.-.
T Consensus 1092 r~w~~frd~~-----~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1092 RSWRSFRDET-----ALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred ccchhhhccc-----cceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeecccc
Confidence 4445556665 8899999997 88999999999999999999999999999999999999999 877766655433
Q ss_pred --eEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEE-eec---ccceeeEE
Q 038533 191 --SVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAE-LER---HRACVNAI 264 (337)
Q Consensus 191 --~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~-~~~---~~~~v~~~ 264 (337)
-..+|++..--.....+ ..-.++.|+. ....-+.|+.... ..+||+.+.. ++.+ +.+ ....-+..
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf------~ed~~vkFsn-~~q~r~~gt~~d~-a~~YDvqT~~-~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSF------DEDKAVKFSN-SLQFRALGTEADD-ALLYDVQTCS-PLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred CchHHHhccccccCccccc------cccceeehhh-hHHHHHhcccccc-eEEEecccCc-HHHHhcCcchhhhhhcccc
Confidence 46789987632222222 3456788886 3333344444444 9999999844 4444 321 22334778
Q ss_pred EeCCCCCCeEEEEcCCCcEEEEeCCC
Q 038533 265 AWAPQSRRHICSVGDDSQAFIWELPL 290 (337)
Q Consensus 265 ~~~~~~~~~l~~~~~dg~i~iw~~~~ 290 (337)
.|+|+.. +++- || .+||++.
T Consensus 1237 ~FsP~D~-LIln---dG--vLWDvR~ 1256 (1516)
T KOG1832|consen 1237 HFSPCDT-LILN---DG--VLWDVRI 1256 (1516)
T ss_pred ccCCCcc-eEee---Cc--eeeeecc
Confidence 9999988 5553 44 4799983
No 319
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.66 E-value=4e-05 Score=66.43 Aligned_cols=214 Identities=12% Similarity=-0.021 Sum_probs=119.2
Q ss_pred EEEEeCC-eEEEEecCCCCccceeeecCCCCC----cccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhc
Q 038533 93 LLASSGD-FLRLWDVGDSSIEPVAVLNNSKSS----EFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIA 167 (337)
Q Consensus 93 ~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~ 167 (337)
+++..++ .+.-+|..++ +.+......... ....++ . .+..++.++.+|.+..+|.++++.+.....
T Consensus 163 v~v~~~~g~l~ald~~tG--~~~W~~~~~~~~~~~~~~~sP~----v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~ 233 (394)
T PRK11138 163 VLVHTSNGMLQALNESDG--AVKWTVNLDVPSLTLRGESAPA----T---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRI 233 (394)
T ss_pred EEEECCCCEEEEEEccCC--CEeeeecCCCCcccccCCCCCE----E---ECCEEEEEcCCCEEEEEEccCChhhheecc
Confidence 5555455 8999999998 444444322100 000121 1 124566777889999999999886654331
Q ss_pred cCC-------ceeEEEeC---CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC
Q 038533 168 HDK-------EVYDICWG---EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN 237 (337)
Q Consensus 168 ~~~-------~v~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~ 237 (337)
... ....+..+ .+..++.++.+|.+..+|..+++..-.... .....+.. .+..+++++.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-----~~~~~~~~---~~~~vy~~~~~g~ 305 (394)
T PRK11138 234 SQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY-----GSVNDFAV---DGGRIYLVDQNDR 305 (394)
T ss_pred ccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC-----CCccCcEE---ECCEEEEEcCCCe
Confidence 100 01111111 256777788899999999998874332211 11112222 4567777788887
Q ss_pred EEEEEECCCCCCCeEEeeccc-ceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeE-EE
Q 038533 238 KVVILDIRSPTLPVAELERHR-ACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQ-LQ 315 (337)
Q Consensus 238 ~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~ 315 (337)
+..+|..+ ++.+-....-. ....+.... +. .|+.++.||.+.+.|...++ ..-...-....+.+ ..
T Consensus 306 -l~ald~~t-G~~~W~~~~~~~~~~~sp~v~--~g-~l~v~~~~G~l~~ld~~tG~-------~~~~~~~~~~~~~s~P~ 373 (394)
T PRK11138 306 -VYALDTRG-GVELWSQSDLLHRLLTAPVLY--NG-YLVVGDSEGYLHWINREDGR-------FVAQQKVDSSGFLSEPV 373 (394)
T ss_pred -EEEEECCC-CcEEEcccccCCCcccCCEEE--CC-EEEEEeCCCEEEEEECCCCC-------EEEEEEcCCCcceeCCE
Confidence 99999987 43332221111 111222221 34 78889999999999988332 11122112222221 12
Q ss_pred EccCCCceEEEEcCCcEEEEeC
Q 038533 316 WSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 316 ~~~~~~~l~~~~~d~~i~iw~l 337 (337)
. .++ .|+.++.||.|..+++
T Consensus 374 ~-~~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 374 V-ADD-KLLIQARDGTVYAITR 393 (394)
T ss_pred E-ECC-EEEEEeCCceEEEEeC
Confidence 2 233 6888899999988764
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.1e-06 Score=77.80 Aligned_cols=185 Identities=16% Similarity=0.166 Sum_probs=121.7
Q ss_pred CCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCcee
Q 038533 127 APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTI 205 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 205 (337)
..+.|++++ ...|+-|+.+|.|++++... .+ .+...|... + +|.++++|+.||++.+-.+-+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 567777774 58999999999999999743 33 444445443 5 799999999999999999988875554
Q ss_pred eecCCCCCCCceEEEeecC----CCcEEEEEEecCCEEEEEECCCCCCCeE-EeecccceeeEEEeCCCCCCeEEEEcCC
Q 038533 206 IYESPQPDTPLLRLAWNKQ----DLRYMATILMDSNKVVILDIRSPTLPVA-ELERHRACVNAIAWAPQSRRHICSVGDD 280 (337)
Q Consensus 206 ~~~~~~~~~~i~~~~~~~~----~~~~l~~~~~d~~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d 280 (337)
... ..++.+++++|. ..+.+++|+..| +.++.-+-.+.... .+....++|.++.|. |. ++|=++.+
T Consensus 109 ~df----~rpiksial~Pd~~~~~sk~fv~GG~ag--lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~-lIAWand~ 179 (846)
T KOG2066|consen 109 YDF----KRPIKSIALHPDFSRQQSKQFVSGGMAG--LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GN-LIAWANDD 179 (846)
T ss_pred Eec----CCcceeEEeccchhhhhhhheeecCcce--EEEehhhhhcCccceeeecCccceEEEEec--Cc-EEEEecCC
Confidence 432 478999999993 256788887766 77776543332222 345567899999997 44 77777755
Q ss_pred CcEEEEeCCCCCCCCCCCCC-ceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 281 SQAFIWELPLPPVAGPNGID-PMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 281 g~i~iw~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
| |+|||+.....-. ..+ +........-...+.|.+..+ +..|+..+|+|..
T Consensus 180 G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~d~v~i~~ 231 (846)
T KOG2066|consen 180 G-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR--LVIGWGDSVKICS 231 (846)
T ss_pred C-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe--EEEecCCeEEEEE
Confidence 5 8999998322110 000 111111122346678888764 4445555666654
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.7e-05 Score=71.03 Aligned_cols=214 Identities=12% Similarity=0.156 Sum_probs=129.6
Q ss_pred ceeEEEEecceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C--
Q 038533 23 PLYAMAVCGQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-- 99 (337)
Q Consensus 23 ~v~~~~~s~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-- 99 (337)
.|.|+.=++..+|.|+. +|.|.+++ ..-.... .+ ..++..|...-|.-++. ++|++-+ |
T Consensus 27 ~isc~~s~~~~vvigt~----~G~V~~Ln--~s~~~~~---~f-qa~~~siv~~L~~~~~~--------~~L~sv~Ed~~ 88 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTA----DGRVVILN--SSFQLIR---GF-QAYEQSIVQFLYILNKQ--------NFLFSVGEDEQ 88 (933)
T ss_pred ceeEEcCCCceEEEeec----cccEEEec--ccceeee---hh-eecchhhhhHhhcccCc--------eEEEEEeecCC
Confidence 45555544889999998 99888843 3222211 11 23333433333444443 3676644 2
Q ss_pred ----eEEEEecCCCC----ccce--eeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCC--Ccc--chhhh
Q 038533 100 ----FLRLWDVGDSS----IEPV--AVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIE--KGV--VETQL 165 (337)
Q Consensus 100 ----~v~vw~~~~~~----~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~--~~~--~~~~~ 165 (337)
.++||+++..+ +.+. ..+..+..+.-..++.+++.+. +-+.+|+|-.+|.|..+.-. ..+ .....
T Consensus 89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~ 167 (933)
T KOG2114|consen 89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYS 167 (933)
T ss_pred CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeee
Confidence 69999997542 2233 1222322222237888999997 88999999999999998422 111 11112
Q ss_pred hccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEEC
Q 038533 166 IAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI 244 (337)
Q Consensus 166 ~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~ 244 (337)
....++|+.+++. ++..++.+.....|.+|.+.... +... ....+...+.|..+++ ....+++++... +.+||.
T Consensus 168 ~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~-~ld~~G~~lnCss~~~-~t~qfIca~~e~--l~fY~s 242 (933)
T KOG2114|consen 168 HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSLK-VLDNNGISLNCSSFSD-GTYQFICAGSEF--LYFYDS 242 (933)
T ss_pred ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-ccee-eeccCCccceeeecCC-CCccEEEecCce--EEEEcC
Confidence 2346789999999 76664444445679999998544 2222 1224667899999997 334455555443 999998
Q ss_pred CCCCCCeEEee-ccccee
Q 038533 245 RSPTLPVAELE-RHRACV 261 (337)
Q Consensus 245 ~~~~~~~~~~~-~~~~~v 261 (337)
.. ..+...+. +|....
T Consensus 243 d~-~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 243 DG-RGPCFAFEVGEKKEM 259 (933)
T ss_pred CC-cceeeeecCCCeEEE
Confidence 86 44555665 665543
No 322
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.63 E-value=3.2e-05 Score=62.03 Aligned_cols=213 Identities=12% Similarity=0.014 Sum_probs=122.7
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeCC
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGE 179 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~ 179 (337)
.|..||..++ +.+....... .. ....+... + ++..+++++.++.|..||..+|+.+..+.. ...+.......
T Consensus 4 ~l~~~d~~tG--~~~W~~~~~~--~~-~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~ 75 (238)
T PF13360_consen 4 TLSALDPRTG--KELWSYDLGP--GI-GGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVD 75 (238)
T ss_dssp EEEEEETTTT--EEEEEEECSS--SC-SSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEE
T ss_pred EEEEEECCCC--CEEEEEECCC--CC-CCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeec
Confidence 6788898888 4444443210 00 22222222 1 456777778999999999999997766654 23222222224
Q ss_pred CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCC-CCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeeccc
Q 038533 180 ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPD-TPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHR 258 (337)
Q Consensus 180 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~ 258 (337)
+..++.++.++.+..+|..+++............ .......... .+..++++..++. |..+|+++ ++.+.......
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~-l~~~d~~t-G~~~w~~~~~~ 152 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGK-LVALDPKT-GKLLWKYPVGE 152 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSE-EEEEETTT-TEEEEEEESST
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCc-EEEEecCC-CcEEEEeecCC
Confidence 5667777788899999999998766532221111 1122223332 4777888777777 99999998 55555554432
Q ss_pred ce-----------eeEEEeCCCCCCeEEEEcCCCc-EEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEE
Q 038533 259 AC-----------VNAIAWAPQSRRHICSVGDDSQ-AFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAI 326 (337)
Q Consensus 259 ~~-----------v~~~~~~~~~~~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 326 (337)
.. ...+.+. ++ .++.++.++. +.+ |+..+. .. .......+..+ ..+++..++.+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~g~~~~~-d~~tg~--------~~-w~~~~~~~~~~-~~~~~~~l~~~ 218 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVIS-DG--RVYVSSGDGRVVAV-DLATGE--------KL-WSKPISGIYSL-PSVDGGTLYVT 218 (238)
T ss_dssp T-SS--EEEETTEEEEEECC-TT--EEEEECCTSSEEEE-ETTTTE--------EE-EEECSS-ECEC-EECCCTEEEEE
T ss_pred CCCCcceeeecccccceEEE-CC--EEEEEcCCCeEEEE-ECCCCC--------EE-EEecCCCccCC-ceeeCCEEEEE
Confidence 11 1233333 33 5666777775 555 888221 11 12222223332 34566677777
Q ss_pred EcCCcEEEEeC
Q 038533 327 AFSNKMQLLKV 337 (337)
Q Consensus 327 ~~d~~i~iw~l 337 (337)
+.++.+..||+
T Consensus 219 ~~~~~l~~~d~ 229 (238)
T PF13360_consen 219 SSDGRLYALDL 229 (238)
T ss_dssp ETTTEEEEEET
T ss_pred eCCCEEEEEEC
Confidence 78999999875
No 323
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.61 E-value=0.00021 Score=59.73 Aligned_cols=235 Identities=12% Similarity=0.119 Sum_probs=127.7
Q ss_pred Ee--cceEEEeee------eccCcceEEEEEecCCCcceecCCCc----CCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 29 VC--GQRIAVGSF------IEDYTNRVDVVSFEPESLSIKTHPSL----SFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 29 ~s--~~~la~g~~------~~~~d~~i~i~~~~~~~~~~~~~~~~----~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
++ ++.|.++.. .+..+..|.+||.......... .+ ..........++++|+++ +|..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i--~~p~~p~~~~~~~~~~~~ls~dgk---------~l~V 121 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADI--ELPEGPRFLVGTYPWMTSLTPDNK---------TLLF 121 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEE--ccCCCchhhccCccceEEECCCCC---------EEEE
Confidence 66 566665552 1113789999887765543332 11 001123345889999999 6665
Q ss_pred eC---C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCC-ccch-h---hhhc
Q 038533 97 SG---D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEK-GVVE-T---QLIA 167 (337)
Q Consensus 97 ~~---~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~-~~~~-~---~~~~ 167 (337)
.. + .|.+.|+.++ +.+..+.-. ....-...++ + ..++- ..||......+.+ ++.. . .+..
T Consensus 122 ~n~~p~~~V~VvD~~~~--kvv~ei~vp------~~~~vy~t~e-~-~~~~~-~~Dg~~~~v~~d~~g~~~~~~~~vf~~ 190 (352)
T TIGR02658 122 YQFSPSPAVGVVDLEGK--AFVRMMDVP------DCYHIFPTAN-D-TFFMH-CRDGSLAKVGYGTKGNPKIKPTEVFHP 190 (352)
T ss_pred ecCCCCCEEEEEECCCC--cEEEEEeCC------CCcEEEEecC-C-ccEEE-eecCceEEEEecCCCceEEeeeeeecC
Confidence 44 4 9999999998 455544432 2122222222 2 22222 2344444433322 1100 0 0111
Q ss_pred cCCceeE-EEeC--CCcEEEEEcCCCeEEEEECCCCCCce----eeecCC-----CCCCCceEEEeecCCCcEEEEEEe-
Q 038533 168 HDKEVYD-ICWG--EARVFASVSADGSVRIFDLRDKEHST----IIYESP-----QPDTPLLRLAWNKQDLRYMATILM- 234 (337)
Q Consensus 168 ~~~~v~~-~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~-----~~~~~i~~~~~~~~~~~~l~~~~~- 234 (337)
...++.. -.+. ++.++..... |.|.+.|+....... .+.... -..+.+.-++++| +++.+++...
T Consensus 191 ~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~ 268 (352)
T TIGR02658 191 EDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQ 268 (352)
T ss_pred CccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecC
Confidence 0000000 0223 4555555544 999999975543211 111110 0223445599999 7777777431
Q ss_pred --------cCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEE-EEcCCCcEEEEeCC
Q 038533 235 --------DSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHIC-SVGDDSQAFIWELP 289 (337)
Q Consensus 235 --------d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~-~~~~dg~i~iw~~~ 289 (337)
.++.|.++|..+ .+.+..+.. ...+..++++|+++.+|+ +...++.|.+.|..
T Consensus 269 ~~~~thk~~~~~V~ViD~~t-~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 269 RAKWTHKTASRFLFVVDAKT-GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred CccccccCCCCEEEEEECCC-CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 113599999988 555666653 357899999999984444 44468899999998
No 324
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=1.5e-06 Score=77.55 Aligned_cols=107 Identities=14% Similarity=0.230 Sum_probs=84.5
Q ss_pred CeEEEecCCCCcccCcCCccEEEEeC-----C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee
Q 038533 73 PTKLMFDPNSSSRKSSSNRHLLASSG-----D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS 146 (337)
Q Consensus 73 i~~i~~~~~~~~~~~~~~~~~l~~~~-----~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 146 (337)
-+-..|+|..+ ++|.++ + .|.||- +++++..-.+.+ -.+++++|+| ..-.|+.|-
T Consensus 18 sti~SWHPseP---------lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--------~hatSLCWHp-e~~vLa~gw 78 (1416)
T KOG3617|consen 18 STISSWHPSEP---------LFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--------VHATSLCWHP-EEFVLAQGW 78 (1416)
T ss_pred ccccccCCCCc---------eeEEEEecCCCCceEEEEe-cCCCCCcccccc--------eehhhhccCh-HHHHHhhcc
Confidence 34467999998 888875 2 788873 555322222222 3467899999 888999999
Q ss_pred CCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECC
Q 038533 147 IDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLR 198 (337)
Q Consensus 147 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~ 198 (337)
.-|.+.+|...+.+.-.....|..+|..+.|+ +|..++++..-|.+.+|...
T Consensus 79 e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 79 EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 99999999988777655666799999999999 89999999999999999876
No 325
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=8.9e-07 Score=72.13 Aligned_cols=164 Identities=13% Similarity=0.111 Sum_probs=106.3
Q ss_pred EEEEeCCCccchhhhhccCCceeEEEeCC--CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcE
Q 038533 151 CTIWDIEKGVVETQLIAHDKEVYDICWGE--ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRY 228 (337)
Q Consensus 151 i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 228 (337)
+++.+..+-+....+..+...|.+++|+| ..++..++.+..|++.|+++......... ...+++++|+..+.++
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a----~~~~wSC~wDlde~h~ 250 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA----YNQIWSCCWDLDERHV 250 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec----cCCceeeeeccCCcce
Confidence 55555555555555667888899999994 44788999999999999998875444332 2789999999967777
Q ss_pred EEEEEecCCEEEEEECCCCCCCeEEeec--ccceeeEEEe------CCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCC
Q 038533 229 MATILMDSNKVVILDIRSPTLPVAELER--HRACVNAIAW------APQSRRHICSVGDDSQAFIWELPLPPVAGPNGID 300 (337)
Q Consensus 229 l~~~~~d~~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~------~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 300 (337)
++.|-.+|. |.+||+|.+..++..+.+ ...+|..++. .+.+. +|+....+ +..|++....... .
T Consensus 251 IYaGl~nG~-VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt~--l~f~ei~~s~~~~----p 322 (463)
T KOG1645|consen 251 IYAGLQNGM-VLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALTV--LQFYEIVFSAECL----P 322 (463)
T ss_pred eEEeccCce-EEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeehh--hhhhhhhccccCC----C
Confidence 888888887 999999988776665543 1234444433 23344 55555443 5677776333111 1
Q ss_pred ceeeeeCCCceeEEEEccCCCceEEE
Q 038533 301 PMSMYSAGSEINQLQWSPAQPDWLAI 326 (337)
Q Consensus 301 ~~~~~~~~~~v~~~~~~~~~~~l~~~ 326 (337)
+....+..+...+++.++..+.++.+
T Consensus 323 ~vlele~pG~cismqy~~~snh~l~t 348 (463)
T KOG1645|consen 323 CVLELEPPGICISMQYHGVSNHLLLT 348 (463)
T ss_pred cccccCCCcceeeeeecCccceEEEE
Confidence 11222334556667776655555443
No 326
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.56 E-value=8.1e-05 Score=60.13 Aligned_cols=202 Identities=11% Similarity=0.075 Sum_probs=126.2
Q ss_pred CeeEEEeecCCCCeEEEeeCCCc-EEEEeCCCccchhhhhccCCcee--EEEeC-CCcEEEEEcC-----CCeEEEEECC
Q 038533 128 PLTSFDWNEIEPKRIGTCSIDTT-CTIWDIEKGVVETQLIAHDKEVY--DICWG-EARVFASVSA-----DGSVRIFDLR 198 (337)
Q Consensus 128 ~i~~~~~~~~~~~~l~~~~~dg~-i~v~d~~~~~~~~~~~~~~~~v~--~~~~~-~~~~l~~~~~-----dg~i~iwd~~ 198 (337)
....++.+|..+..++.+-.-|. ..+||.++++....+....+.-. .-+|+ ++++|++.-. .|.|-+||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 44567888867777888877665 78899999987776654333321 35688 7888887643 5889999999
Q ss_pred CCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEe------------------cCCEEEEEECCCCCCCeEE--e--ec
Q 038533 199 DKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILM------------------DSNKVVILDIRSPTLPVAE--L--ER 256 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~------------------d~~~i~i~d~~~~~~~~~~--~--~~ 256 (337)
.. ...+-+.+.+.-.-..+.+.| ++..|+++.. +.+ +...|.++ ++.+.. + ..
T Consensus 86 ~~--~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~ps-L~~ld~~s-G~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 86 RG--YRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPS-LVYLDARS-GALLEQVELPPDL 160 (305)
T ss_pred CC--cEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCc-eEEEecCC-CceeeeeecCccc
Confidence 32 122233323444556788888 8877766531 123 55556665 444444 3 33
Q ss_pred ccceeeEEEeCCCCCCeEEEEcCCC-------cEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEE-c
Q 038533 257 HRACVNAIAWAPQSRRHICSVGDDS-------QAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIA-F 328 (337)
Q Consensus 257 ~~~~v~~~~~~~~~~~~l~~~~~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~ 328 (337)
|...|.-+++.++|. .++..-..| -+-+++.. ...+...........-...+-+|++++++..+++++ .
T Consensus 161 ~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPr 237 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPR 237 (305)
T ss_pred cccceeeEEecCCCc-EEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCC
Confidence 667899999999987 555543333 23344433 211100111112233467899999999998777666 6
Q ss_pred CCcEEEEeC
Q 038533 329 SNKMQLLKV 337 (337)
Q Consensus 329 d~~i~iw~l 337 (337)
.+.+.+|+.
T Consensus 238 Gg~~~~~d~ 246 (305)
T PF07433_consen 238 GGRVAVWDA 246 (305)
T ss_pred CCEEEEEEC
Confidence 789999963
No 327
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.56 E-value=0.0002 Score=56.90 Aligned_cols=197 Identities=10% Similarity=0.098 Sum_probs=114.1
Q ss_pred CCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhcc-CCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCc-
Q 038533 127 APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAH-DKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHS- 203 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~-~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~- 203 (337)
..+..++|+|.++.++++....+.|..++. +|+.++.+.-. .+....|++. ++.++++--.++.+.++++......
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 569999999955668888888899988897 57777666432 3567889998 6666666667899999998443211
Q ss_pred --e---eee--cCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCC--CCCCeEEe--e------cccceeeEEEe
Q 038533 204 --T---IIY--ESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRS--PTLPVAEL--E------RHRACVNAIAW 266 (337)
Q Consensus 204 --~---~~~--~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~--~~~~~~~~--~------~~~~~v~~~~~ 266 (337)
. .+. ....++..+-.++|+| .++.|+++-...- ..+|.++. ....+... . .....+.++++
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~ 178 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKP-KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY 178 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSS-EEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred chhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCC-hhhEEEccccCccceeeccccccccccceeccccceEE
Confidence 1 111 1113456789999999 5555556666655 66666653 11111111 1 12346788999
Q ss_pred CCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCcee---eee--C-----CCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 267 APQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMS---MYS--A-----GSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 267 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~--~-----~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
+|....+++.......|..+|.. +. +.. +.. | -...-.|+|.++| .|+.+++-+...+|+
T Consensus 179 ~p~t~~lliLS~es~~l~~~d~~--------G~-~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LYIvsEpNlfy~f~ 248 (248)
T PF06977_consen 179 DPRTGHLLILSDESRLLLELDRQ--------GR-VVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLYIVSEPNLFYRFE 248 (248)
T ss_dssp ETTTTEEEEEETTTTEEEEE-TT-----------EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEEE
T ss_pred cCCCCeEEEEECCCCeEEEECCC--------CC-EEEEEEeCCcccCcccccCCccEEEECCCC-CEEEEcCCceEEEeC
Confidence 99876578888888888888865 11 211 111 1 1246889999999 577778877776653
No 328
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.49 E-value=0.0002 Score=62.10 Aligned_cols=220 Identities=15% Similarity=0.160 Sum_probs=117.5
Q ss_pred CCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC
Q 038533 69 HPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI 147 (337)
Q Consensus 69 ~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 147 (337)
..-....+.++|+++ +++.+++ ...|+..... +... . +.-..+.|.+ .+.+|+-..
T Consensus 31 ~~~~p~~ls~npngr---------~v~V~g~geY~iyt~~~~--r~k~--~--------G~g~~~vw~~--~n~yAv~~~ 87 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGR---------FVLVCGDGEYEIYTALAW--RNKA--F--------GSGLSFVWSS--RNRYAVLES 87 (443)
T ss_dssp -SS--SEEEE-TTSS---------EEEEEETTEEEEEETTTT--EEEE--E--------EE-SEEEE-T--SSEEEEE-T
T ss_pred CCcCCeeEEECCCCC---------EEEEEcCCEEEEEEccCC--cccc--c--------CceeEEEEec--CccEEEEEC
Confidence 344578999999999 7777776 7777773333 2222 1 3345788986 455777777
Q ss_pred CCcEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCc
Q 038533 148 DTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLR 227 (337)
Q Consensus 148 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 227 (337)
++.|.++.--+.+....++.. ..+..+-. |.+|...+.+ .|.+||..+++....+.. .+|..+.|++ ++.
T Consensus 88 ~~~I~I~kn~~~~~~k~i~~~-~~~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v-----~~vk~V~Ws~-~g~ 157 (443)
T PF04053_consen 88 SSTIKIYKNFKNEVVKSIKLP-FSVEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDV-----SAVKYVIWSD-DGE 157 (443)
T ss_dssp TS-EEEEETTEE-TT-----S-S-EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS------E-EEEEE-T-TSS
T ss_pred CCeEEEEEcCccccceEEcCC-cccceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEec-----CCCcEEEEEC-CCC
Confidence 899999743333333344321 22333332 7777766654 899999999986665532 2489999999 899
Q ss_pred EEEEEEecCCEEEEEECCCC--------C--CCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCC
Q 038533 228 YMATILMDSNKVVILDIRSP--------T--LPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPN 297 (337)
Q Consensus 228 ~l~~~~~d~~~i~i~d~~~~--------~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~ 297 (337)
+++..+.+. +.+++.... + ..+..+..-...|.+.+|..+ - ++.|... .|+-+--.
T Consensus 158 ~val~t~~~--i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~-fiYtT~~--~lkYl~~G-------- 223 (443)
T PF04053_consen 158 LVALVTKDS--IYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-C-FIYTTSN--HLKYLVNG-------- 223 (443)
T ss_dssp EEEEE-S-S--EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-E-EEEE-TT--EEEEEETT--------
T ss_pred EEEEEeCCe--EEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-E-EEEEcCC--eEEEEEcC--------
Confidence 999988765 777765431 0 123333332568899999876 2 4555443 66662211
Q ss_pred CCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 298 GIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 298 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
+...+..-..++.=+...|....++....|+.+..+.|
T Consensus 224 --e~~~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 224 --ETGIIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp --EEEEEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred --CcceEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 13334434567777788886667888888888776643
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=5.1e-05 Score=68.11 Aligned_cols=191 Identities=11% Similarity=0.153 Sum_probs=120.4
Q ss_pred EecCCCCcccCcCCccEEEEeCCeEEEEecCCCCccceeeecCCCCCcccCC-eeEEEeecCCCCeEEEeeCCCc-----
Q 038533 77 MFDPNSSSRKSSSNRHLLASSGDFLRLWDVGDSSIEPVAVLNNSKSSEFCAP-LTSFDWNEIEPKRIGTCSIDTT----- 150 (337)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~~~~~dg~----- 150 (337)
+|++.+. .+|.|+...+||-++.. .+....++.+. .. |+.+ |.-...++|++.+.|+.
T Consensus 30 c~~s~~~---------~vvigt~~G~V~~Ln~s-~~~~~~fqa~~-----~siv~~L-~~~~~~~~L~sv~Ed~~~np~l 93 (933)
T KOG2114|consen 30 CCSSSTG---------SVVIGTADGRVVILNSS-FQLIRGFQAYE-----QSIVQFL-YILNKQNFLFSVGEDEQGNPVL 93 (933)
T ss_pred EEcCCCc---------eEEEeeccccEEEeccc-ceeeehheecc-----hhhhhHh-hcccCceEEEEEeecCCCCceE
Confidence 4567776 88888754444444443 13445666655 44 3333 33224467887776654
Q ss_pred EEEEeCCCcc------ch--hhhhc-----cCCceeEEEeC-CCcEEEEEcCCCeEEEEECC--CCCCceeeecCCCCCC
Q 038533 151 CTIWDIEKGV------VE--TQLIA-----HDKEVYDICWG-EARVFASVSADGSVRIFDLR--DKEHSTIIYESPQPDT 214 (337)
Q Consensus 151 i~v~d~~~~~------~~--~~~~~-----~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~ 214 (337)
+++||++.-+ ++ ..+.. ...++.+++.+ +-+.++.|-.+|.|..+.-. ..+..+..+.. ..+.
T Consensus 94 lkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~-~~~~ 172 (933)
T KOG2114|consen 94 LKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSH-RGKE 172 (933)
T ss_pred EEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeec-cCCC
Confidence 8999987542 12 01111 34568889999 78899999999999988532 22222333333 3468
Q ss_pred CceEEEeecCCCcE-EEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 215 PLLRLAWNKQDLRY-MATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 215 ~i~~~~~~~~~~~~-l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
+|+.+.+.. ++.. +++++ ... |.+|.+.........+..|...++|..+++... -+++++ +..+.+|+.+
T Consensus 173 pITgL~~~~-d~~s~lFv~T-t~~-V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~-qfIca~-~e~l~fY~sd 243 (933)
T KOG2114|consen 173 PITGLALRS-DGKSVLFVAT-TEQ-VMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTY-QFICAG-SEFLYFYDSD 243 (933)
T ss_pred CceeeEEec-CCceeEEEEe-cce-eEEEEecCCCcceeeeccCCccceeeecCCCCc-cEEEec-CceEEEEcCC
Confidence 999999987 6665 34433 344 999999853312344677777899999988665 455554 3468999988
No 330
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.40 E-value=0.00012 Score=58.66 Aligned_cols=178 Identities=12% Similarity=0.084 Sum_probs=104.8
Q ss_pred EEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhh-hccCC
Q 038533 93 LLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQL-IAHDK 170 (337)
Q Consensus 93 ~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~ 170 (337)
+++...+ .+..||..++ +.+...... .++...... .+..++++..++.|..+|.++|+.+... .....
T Consensus 39 v~~~~~~~~l~~~d~~tG--~~~W~~~~~------~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 39 VYVASGDGNLYALDAKTG--KVLWRFDLP------GPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp EEEEETTSEEEEEETTTS--EEEEEEECS------SCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred EEEEcCCCEEEEEECCCC--CEEEEeecc------ccccceeee--cccccccccceeeeEecccCCcceeeeecccccc
Confidence 5555455 9999999999 445444432 111111111 4566777778889999999999987763 32211
Q ss_pred ---ceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCC-CCCc-------eEEEeecCCCcEEEEEEecCCE
Q 038533 171 ---EVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQP-DTPL-------LRLAWNKQDLRYMATILMDSNK 238 (337)
Q Consensus 171 ---~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~i-------~~~~~~~~~~~~l~~~~~d~~~ 238 (337)
........ .++.++.+..++.|..+|+++++..-........ ...+ ..+.+. ++ .++.++.++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~- 184 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSSGDGR- 184 (238)
T ss_dssp TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEECCTSS-
T ss_pred ccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEcCCCe-
Confidence 11122222 3778888888999999999999864444332111 1111 222332 34 7777777776
Q ss_pred EEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 239 VVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 239 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
+.-+|+.+.. .+.... ...+..+ ..+.+. .|+.++.++.|..||+.
T Consensus 185 ~~~~d~~tg~-~~w~~~--~~~~~~~-~~~~~~-~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 185 VVAVDLATGE-KLWSKP--ISGIYSL-PSVDGG-TLYVTSSDGRLYALDLK 230 (238)
T ss_dssp EEEEETTTTE-EEEEEC--SS-ECEC-EECCCT-EEEEEETTTEEEEEETT
T ss_pred EEEEECCCCC-EEEEec--CCCccCC-ceeeCC-EEEEEeCCCEEEEEECC
Confidence 4444998843 233222 2233332 235555 67777799999999999
No 331
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.37 E-value=0.00029 Score=59.23 Aligned_cols=220 Identities=14% Similarity=0.125 Sum_probs=124.2
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEE---eecC---CCCeEEEeeC----------CCcEEEEeCCCc----
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFD---WNEI---EPKRIGTCSI----------DTTCTIWDIEKG---- 159 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~---~~~~l~~~~~----------dg~i~v~d~~~~---- 159 (337)
.|++.|..+.+......+... ..+++++ +... ...+|++|.. .|.|.++++...
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~------E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~ 76 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPN------EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN 76 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETT------EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----
T ss_pred EEEEEeCCCCeEEEEEECCCC------ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc
Confidence 467777777643333334432 2344443 3321 1467777752 289999999884
Q ss_pred cchhhh--hccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCC-CceeeecCCCCCCCceEEEeecCCCcEEEEEEecC
Q 038533 160 VVETQL--IAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKE-HSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDS 236 (337)
Q Consensus 160 ~~~~~~--~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~ 236 (337)
..+..+ ....++|++++--.+.++++. .+.|.+|++...+ ........ ....+.++.. .++++++|....
T Consensus 77 ~~l~~i~~~~~~g~V~ai~~~~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~--~~~~i~sl~~---~~~~I~vgD~~~ 149 (321)
T PF03178_consen 77 FKLKLIHSTEVKGPVTAICSFNGRLVVAV--GNKLYVYDLDNSKTLLKKAFYD--SPFYITSLSV---FKNYILVGDAMK 149 (321)
T ss_dssp -EEEEEEEEEESS-EEEEEEETTEEEEEE--TTEEEEEEEETTSSEEEEEEE---BSSSEEEEEE---ETTEEEEEESSS
T ss_pred eEEEEEEEEeecCcceEhhhhCCEEEEee--cCEEEEEEccCcccchhhheec--ceEEEEEEec---cccEEEEEEccc
Confidence 122211 245788999887755544443 3789999999887 32222221 2235566655 456899998888
Q ss_pred CEEEEEECCCCCCCeEEee--cccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCC-C--ceeeeeCCCce
Q 038533 237 NKVVILDIRSPTLPVAELE--RHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGI-D--PMSMYSAGSEI 311 (337)
Q Consensus 237 ~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~--~~~~~~~~~~v 311 (337)
+ +.++..+.....+..+. .....++++.|-++++ .++.+..+|.+.++...........+. . ..........|
T Consensus 150 s-v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v 227 (321)
T PF03178_consen 150 S-VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIV 227 (321)
T ss_dssp S-EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-E
T ss_pred C-EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCcc
Confidence 8 88885554232233332 2345688999987776 899999999999999973221111111 1 12333446678
Q ss_pred eEE---EEccC--CC------ceEEEEcCCcEEE
Q 038533 312 NQL---QWSPA--QP------DWLAIAFSNKMQL 334 (337)
Q Consensus 312 ~~~---~~~~~--~~------~l~~~~~d~~i~i 334 (337)
+++ +..|. +. .++.++.+|.|-+
T Consensus 228 ~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 228 NSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 888 55552 22 2777778888763
No 332
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.36 E-value=7.9e-05 Score=68.29 Aligned_cols=146 Identities=14% Similarity=0.055 Sum_probs=99.9
Q ss_pred CCCeEEEe-eCCCcEEEEeCCCccchhhhhccCCc-eeEEEeC------CCcEEEEEcCCCeEEEEECCCCCCceee--e
Q 038533 138 EPKRIGTC-SIDTTCTIWDIEKGVVETQLIAHDKE-VYDICWG------EARVFASVSADGSVRIFDLRDKEHSTII--Y 207 (337)
Q Consensus 138 ~~~~l~~~-~~dg~i~v~d~~~~~~~~~~~~~~~~-v~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~ 207 (337)
+.++|+.- .....|+-.|++.|+.+.....+... |..++-. .+...+.|-.+..+..||.|-....... .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 44454443 35678999999999999888876644 6666543 1345667777889999999975411111 1
Q ss_pred cCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEe
Q 038533 208 ESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWE 287 (337)
Q Consensus 208 ~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 287 (337)
..........|++-. ...+||+|+.+|. |++||--. .+....+++-..+|..|..+.||+++|+|+ +..|.+++
T Consensus 572 k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~-IRLyd~~g-~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~ 645 (794)
T PF08553_consen 572 KQYSSKNNFSCFATT--EDGYIAVGSNKGD-IRLYDRLG-KRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLID 645 (794)
T ss_pred cccccCCCceEEEec--CCceEEEEeCCCc-EEeecccc-hhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEE
Confidence 111234556677654 5778999999999 99999432 333445666678999999999999555555 46677777
Q ss_pred CC
Q 038533 288 LP 289 (337)
Q Consensus 288 ~~ 289 (337)
..
T Consensus 646 t~ 647 (794)
T PF08553_consen 646 TL 647 (794)
T ss_pred Ee
Confidence 64
No 333
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.35 E-value=0.00075 Score=57.56 Aligned_cols=259 Identities=14% Similarity=0.193 Sum_probs=137.8
Q ss_pred cceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCC-
Q 038533 44 TNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSK- 121 (337)
Q Consensus 44 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~- 121 (337)
.+.+.||+++.. .... .......+....|+|+++ .+|-..+ .|.+++..++.... .+..+..
T Consensus 22 ~~~y~i~d~~~~--~~~~----l~~~~~~~~~~~~sP~g~---------~~~~v~~~nly~~~~~~~~~~~-lT~dg~~~ 85 (353)
T PF00930_consen 22 KGDYYIYDIETG--EITP----LTPPPPKLQDAKWSPDGK---------YIAFVRDNNLYLRDLATGQETQ-LTTDGEPG 85 (353)
T ss_dssp EEEEEEEETTTT--EEEE----SS-EETTBSEEEE-SSST---------EEEEEETTEEEEESSTTSEEEE-SES--TTT
T ss_pred ceeEEEEecCCC--ceEE----CcCCccccccceeecCCC---------eeEEEecCceEEEECCCCCeEE-ecccccee
Confidence 556777666653 3332 012267789999999998 8887776 99999987773211 1222200
Q ss_pred ----------CCcccCCeeEEEeecCCCCeEEEeeCC-Cc-----------------------------------EEEEe
Q 038533 122 ----------SSEFCAPLTSFDWNEIEPKRIGTCSID-TT-----------------------------------CTIWD 155 (337)
Q Consensus 122 ----------~~~~~~~i~~~~~~~~~~~~l~~~~~d-g~-----------------------------------i~v~d 155 (337)
.++.-+.-..+-||| ++++|+....| .. +.|+|
T Consensus 86 i~nG~~dwvyeEEv~~~~~~~~WSp-d~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~ 164 (353)
T PF00930_consen 86 IYNGVPDWVYEEEVFDRRSAVWWSP-DSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVD 164 (353)
T ss_dssp EEESB--HHHHHHTSSSSBSEEE-T-TSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEE
T ss_pred EEcCccceeccccccccccceEECC-CCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEE
Confidence 001012335788999 88887775422 11 23345
Q ss_pred CCCccchh-----hhhccCCceeEEEeC-CCcEEEEE--cCC---CeEEEEECCCCCCceeeecCCCCCCC---ceEEEe
Q 038533 156 IEKGVVET-----QLIAHDKEVYDICWG-EARVFASV--SAD---GSVRIFDLRDKEHSTIIYESPQPDTP---LLRLAW 221 (337)
Q Consensus 156 ~~~~~~~~-----~~~~~~~~v~~~~~~-~~~~l~~~--~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~---i~~~~~ 221 (337)
+.+++... .+......+..+.|. +++.|+.. ..+ ..+.++|..++......... .... -....|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~--~~~Wv~~~~~~~~ 242 (353)
T PF00930_consen 165 LASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET--SDGWVDVYDPPHF 242 (353)
T ss_dssp SSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE--SSSSSSSSSEEEE
T ss_pred CCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec--CCcceeeeccccc
Confidence 54444211 111234457788888 55534433 222 23667788776654443322 1222 235555
Q ss_pred e-cCCCcEEEEEEecCC-EEEEEECCCCCCCeEEeecccceeeE-EEeCCCCCCeEEEEcCC--CcEEEEeCCCCCCCCC
Q 038533 222 N-KQDLRYMATILMDSN-KVVILDIRSPTLPVAELERHRACVNA-IAWAPQSRRHICSVGDD--SQAFIWELPLPPVAGP 296 (337)
Q Consensus 222 ~-~~~~~~l~~~~~d~~-~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~d--g~i~iw~~~~~~~~~~ 296 (337)
. +....++.....+|- .|++++... .....+....-.|.. +.|+++++.+.+++..+ +.-.+|.+....
T Consensus 243 ~~~~~~~~l~~s~~~G~~hly~~~~~~--~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~---- 316 (353)
T PF00930_consen 243 LGPDGNEFLWISERDGYRHLYLYDLDG--GKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS---- 316 (353)
T ss_dssp -TTTSSEEEEEEETTSSEEEEEEETTS--SEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE----
T ss_pred ccCCCCEEEEEEEcCCCcEEEEEcccc--cceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC----
Confidence 4 534555555555554 356666654 334555555556754 67888887566677753 356677666321
Q ss_pred CCCCceeeeeCCCceeEEEEccCCCceEEEEc
Q 038533 297 NGIDPMSMYSAGSEINQLQWSPAQPDWLAIAF 328 (337)
Q Consensus 297 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 328 (337)
+..+..+......-..+.|||++++++..+.
T Consensus 317 -~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 317 -GGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp -TTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred -CCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 0112233222222269999999998886543
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.24 E-value=0.00033 Score=60.00 Aligned_cols=262 Identities=13% Similarity=0.141 Sum_probs=126.3
Q ss_pred ceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC-
Q 038533 23 PLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD- 99 (337)
Q Consensus 23 ~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~- 99 (337)
.|+++.|+ ..-||+|.. .|.|.||.|......-.. . .. +-....+.+-.. .+
T Consensus 3 ~v~~vs~a~~t~Elav~~~----~GeVv~~k~~~n~~~~~~--~--~~---~~~~~~~~~~~~--------------~~~ 57 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLE----SGEVVLFKFGKNQNYGNR--E--QP---PDLDYNFRRFSL--------------NNS 57 (395)
T ss_dssp -EEEEEEETTTTEEEEEET----TS-EEEEEEEE-------------------------S--G--------------GGS
T ss_pred eEEEEEecCCCceEEEEcc----CCcEEEEEcccCCCCCcc--C--CC---cccCcccccccc--------------cCC
Confidence 57888998 578888886 999999999764322100 0 00 011111111110 00
Q ss_pred eEEEEecCC---C----CccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhh--hh----
Q 038533 100 FLRLWDVGD---S----SIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQ--LI---- 166 (337)
Q Consensus 100 ~v~vw~~~~---~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~--~~---- 166 (337)
.-.+-|+.. . .+.+...++..+ ++|++++.| +-.+++.|..+|.+.|.|++....+.. +.
T Consensus 58 ~~~l~di~~r~~~~~~~gf~P~~l~~~~~-----g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~ 130 (395)
T PF08596_consen 58 PGKLTDISDRAPPSLKEGFLPLTLLDAKQ-----GPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFL 130 (395)
T ss_dssp S-SEEE-GGG--TT-SEEEEEEEEE---S------SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T
T ss_pred CcceEEehhhCCcccccccCchhheeccC-----CcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeecccccccc
Confidence 111122211 1 134445555555 899999997 668999999999999999987664432 11
Q ss_pred --ccCCceeEEEeC------CC---cEEEEEcCCCeEEEEECCC-C--CCceeeecC-CCCCCCceEEE-eecC------
Q 038533 167 --AHDKEVYDICWG------EA---RVFASVSADGSVRIFDLRD-K--EHSTIIYES-PQPDTPLLRLA-WNKQ------ 224 (337)
Q Consensus 167 --~~~~~v~~~~~~------~~---~~l~~~~~dg~i~iwd~~~-~--~~~~~~~~~-~~~~~~i~~~~-~~~~------ 224 (337)
.....++++.|. ++ -.+++|...|.+.+|.+.- . ......... ..+.+++..+. ++..
T Consensus 131 ~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~ 210 (395)
T PF08596_consen 131 SKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESAL 210 (395)
T ss_dssp -SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B
T ss_pred ccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCccc
Confidence 134567888887 12 3688899999999998752 1 111111111 12345555554 3221
Q ss_pred --------------CCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeC-----CCCCCeEEEEcCCCcEEE
Q 038533 225 --------------DLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWA-----PQSRRHICSVGDDSQAFI 285 (337)
Q Consensus 225 --------------~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~l~~~~~dg~i~i 285 (337)
-..++++++ +.. ++++...+.+. .++..........+.+- ..+. .|++-..+|.|++
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvS-e~~-irv~~~~~~k~-~~K~~~~~~~~~~~~vv~~~~~~~~~-~Lv~l~~~G~i~i 286 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVS-ESD-IRVFKPPKSKG-AHKSFDDPFLCSSASVVPTISRNGGY-CLVCLFNNGSIRI 286 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE--SSE-EEEE-TT---E-EEEE-SS-EEEEEEEEEEEE-EEEEE-EEEEEETTSEEEE
T ss_pred CchhHhhccccCCCcCcEEEEEc-ccc-eEEEeCCCCcc-cceeeccccccceEEEEeecccCCce-EEEEEECCCcEEE
Confidence 122444444 444 99999887433 33322222233334442 2344 7888889999999
Q ss_pred EeCCCCCCCCCCCCCceeeee----CCCceeEEEEccCCCceEEEE
Q 038533 286 WELPLPPVAGPNGIDPMSMYS----AGSEINQLQWSPAQPDWLAIA 327 (337)
Q Consensus 286 w~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~ 327 (337)
+.+. .+.. .....- ....+....++++|..++-.+
T Consensus 287 ~SLP--~Lke-----i~~~~l~~~~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 287 YSLP--SLKE-----IKSVSLPPPLDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp EETT--T--E-----EEEEE-SS---HHHHTT-EE-TTS-EEEE-S
T ss_pred EECC--CchH-----hhcccCCCccccccccccEECCCCCEEEEeC
Confidence 9999 5432 111111 122355667788886444443
No 335
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.24 E-value=0.00074 Score=58.61 Aligned_cols=137 Identities=9% Similarity=-0.023 Sum_probs=84.6
Q ss_pred CCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceE
Q 038533 139 PKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLR 218 (337)
Q Consensus 139 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~ 218 (337)
+..++.++.+|.+..+|..+++.+..... .....+.. .+..++.++.+|.+..+|..+++..-..... ......+
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~s 330 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDL--LHRLLTA 330 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEccccc--CCCcccC
Confidence 45666777899999999999986544321 11112222 3667888889999999999888642221111 0111222
Q ss_pred EEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeE-EEeCCCCCCeEEEEcCCCcEEEEeC
Q 038533 219 LAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNA-IAWAPQSRRHICSVGDDSQAFIWEL 288 (337)
Q Consensus 219 ~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~iw~~ 288 (337)
... .+..+++++.+|. ++..|..+ ++.+.........+.+ ..+ .+. .|+.++.||.|..++.
T Consensus 331 p~v---~~g~l~v~~~~G~-l~~ld~~t-G~~~~~~~~~~~~~~s~P~~--~~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 331 PVL---YNGYLVVGDSEGY-LHWINRED-GRFVAQQKVDSSGFLSEPVV--ADD-KLLIQARDGTVYAITR 393 (394)
T ss_pred CEE---ECCEEEEEeCCCE-EEEEECCC-CCEEEEEEcCCCcceeCCEE--ECC-EEEEEeCCceEEEEeC
Confidence 222 3567778888888 99999988 5555555433222221 122 233 6888899999888764
No 336
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.16 E-value=0.00079 Score=53.58 Aligned_cols=198 Identities=11% Similarity=0.130 Sum_probs=104.0
Q ss_pred CCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEe
Q 038533 68 DHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTC 145 (337)
Q Consensus 68 ~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 145 (337)
+-...+..|.|.|+.. .++++... .|.-++.+ ++......+.+. +..-.|++.. ++.++++-
T Consensus 19 g~~~e~SGLTy~pd~~--------tLfaV~d~~~~i~els~~-G~vlr~i~l~g~------~D~EgI~y~g-~~~~vl~~ 82 (248)
T PF06977_consen 19 GILDELSGLTYNPDTG--------TLFAVQDEPGEIYELSLD-GKVLRRIPLDGF------GDYEGITYLG-NGRYVLSE 82 (248)
T ss_dssp T--S-EEEEEEETTTT--------EEEEEETTTTEEEEEETT---EEEEEE-SS-------SSEEEEEE-S-TTEEEEEE
T ss_pred CccCCccccEEcCCCC--------eEEEEECCCCEEEEEcCC-CCEEEEEeCCCC------CCceeEEEEC-CCEEEEEE
Confidence 4445599999999876 36666664 77777764 432222333332 5577888875 66666665
Q ss_pred eCCCcEEEEeCCCccc------hhhh-----hccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCC--C-CCceeee---
Q 038533 146 SIDTTCTIWDIEKGVV------ETQL-----IAHDKEVYDICWG-EARVFASVSADGSVRIFDLRD--K-EHSTIIY--- 207 (337)
Q Consensus 146 ~~dg~i~v~d~~~~~~------~~~~-----~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~--~-~~~~~~~--- 207 (337)
-.++.+.++++..... ...+ ..++..+..++|+ .++.|+.+-......+|.++. . .......
T Consensus 83 Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 83 ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HH
T ss_pred cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccc
Confidence 5689999998843221 1111 1345568999999 456666676666667776654 1 1111110
Q ss_pred --cCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeeccc---------ceeeEEEeCCCCCCeEEE
Q 038533 208 --ESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHR---------ACVNAIAWAPQSRRHICS 276 (337)
Q Consensus 208 --~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~~l~~ 276 (337)
........+.+++++|.++.+++....... |..+|.. ++++..+.-.. ...-.|+|.++|. |..
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~-l~~~d~~--G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~--LYI 237 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRL-LLELDRQ--GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN--LYI 237 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETTTTE-EEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT----EEE
T ss_pred cccccceeccccceEEcCCCCeEEEEECCCCe-EEEECCC--CCEEEEEEeCCcccCcccccCCccEEEECCCCC--EEE
Confidence 011123567899999966667766655555 8889844 45555443221 2467899999987 444
Q ss_pred EcCCCcEEEE
Q 038533 277 VGDDSQAFIW 286 (337)
Q Consensus 277 ~~~dg~i~iw 286 (337)
.++-+..++|
T Consensus 238 vsEpNlfy~f 247 (248)
T PF06977_consen 238 VSEPNLFYRF 247 (248)
T ss_dssp EETTTEEEEE
T ss_pred EcCCceEEEe
Confidence 4455555544
No 337
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.10 E-value=0.0052 Score=53.38 Aligned_cols=193 Identities=10% Similarity=0.181 Sum_probs=98.5
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc------chhhhhccCCcee
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV------VETQLIAHDKEVY 173 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~------~~~~~~~~~~~v~ 173 (337)
.|+||+.... ++..+.-.. +.|.++.|+. + ..|++-..||.++++|+.... .+....-....+.
T Consensus 62 ~I~iys~sG~---ll~~i~w~~-----~~iv~~~wt~-~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~ 131 (410)
T PF04841_consen 62 SIQIYSSSGK---LLSSIPWDS-----GRIVGMGWTD-D-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIF 131 (410)
T ss_pred EEEEECCCCC---EeEEEEECC-----CCEEEEEECC-C-CeEEEEEcCCEEEEEeCCCceeechhhhccccCccccccc
Confidence 3888987765 444444433 6899999975 4 556666789999999986333 0111111112222
Q ss_pred EEEeC-CCcEEEEEcCCCeEEEEECCCCC-CceeeecCCCCC------CCceE-EEeecCCCcEEEEEEecCCEEEEEEC
Q 038533 174 DICWG-EARVFASVSADGSVRIFDLRDKE-HSTIIYESPQPD------TPLLR-LAWNKQDLRYMATILMDSNKVVILDI 244 (337)
Q Consensus 174 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~------~~i~~-~~~~~~~~~~l~~~~~d~~~i~i~d~ 244 (337)
...+. .| ++.-..++.+.+..-.... ........+... ..... ..++. +....+....++. +.+.+-
T Consensus 132 ~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~-i~~i~~ 207 (410)
T PF04841_consen 132 AIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGET-IYIIDE 207 (410)
T ss_pred ccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCE-EEEEEc
Confidence 22322 33 2323334444443222211 111111110000 01111 22333 3344444444444 554443
Q ss_pred CCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeee--eCCCceeEEEEccCC
Q 038533 245 RSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMY--SAGSEINQLQWSPAQ 320 (337)
Q Consensus 245 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~ 320 (337)
... .. +. ..+++..++.||+++ ++|.-..+|.+.+...+..+ ..... .-.....++.|.-+.
T Consensus 208 ~~~-~~---i~-~~~~i~~iavSpng~-~iAl~t~~g~l~v~ssDf~~--------~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 208 NSF-KQ---ID-SDGPIIKIAVSPNGK-FIALFTDSGNLWVVSSDFSE--------KLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred ccc-cc---cc-CCCCeEEEEECCCCC-EEEEEECCCCEEEEECcccc--------eeEEeecCcCCCCcEEEEECCC
Confidence 321 11 22 246899999999999 99999999999998776322 22111 123566778887664
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.09 E-value=2.6e-05 Score=68.45 Aligned_cols=112 Identities=12% Similarity=0.104 Sum_probs=81.4
Q ss_pred EEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCC
Q 038533 219 LAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNG 298 (337)
Q Consensus 219 ~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 298 (337)
-+++. ++.+++.|+..|. +++|+-...........+..+.+..+..+++.. ++|.|+..|.|.++.+. . .+|..
T Consensus 39 Tc~ds-t~~~l~~GsS~G~-lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~--~-~~p~~ 112 (726)
T KOG3621|consen 39 TCVDA-TEEYLAMGSSAGS-VYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLN--K-ELPRD 112 (726)
T ss_pred EEeec-CCceEEEecccce-EEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhh--c-cCCCc
Confidence 34444 8899999999998 999997764333333333445666777888877 99999999999999998 4 22111
Q ss_pred CCce--eeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 299 IDPM--SMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 299 ~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
.... .-..|...|++++|++++..+++|...|+|..-+
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~ 152 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTE 152 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEE
Confidence 1111 1223788999999999999999999999987654
No 339
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.08 E-value=0.0011 Score=55.89 Aligned_cols=201 Identities=13% Similarity=0.110 Sum_probs=117.3
Q ss_pred eeCCCceeEEEEe---c------ceEEEeeee--cc---Cc-ceEEEEEecCC-C--cceecCCCcCCCCCCCCeEEEec
Q 038533 18 HESPYPLYAMAVC---G------QRIAVGSFI--ED---YT-NRVDVVSFEPE-S--LSIKTHPSLSFDHPYPPTKLMFD 79 (337)
Q Consensus 18 ~~~~~~v~~~~~s---~------~~la~g~~~--~~---~d-~~i~i~~~~~~-~--~~~~~~~~~~~~~~~~i~~i~~~ 79 (337)
+.....+.+++.- + .+|++|+.- .+ .. |.|.++++... . ..+.. ......+++|++++-.
T Consensus 20 l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~--i~~~~~~g~V~ai~~~ 97 (321)
T PF03178_consen 20 LEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL--IHSTEVKGPVTAICSF 97 (321)
T ss_dssp EETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE--EEEEEESS-EEEEEEE
T ss_pred CCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE--EEEEeecCcceEhhhh
Confidence 3445566666554 2 688888871 11 12 99999999874 1 12222 2234567889998876
Q ss_pred CCCCcccCcCCccEEEEeCCeEEEEecCCCC-ccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCC
Q 038533 80 PNSSSRKSSSNRHLLASSGDFLRLWDVGDSS-IEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEK 158 (337)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~ 158 (337)
++. ++++.+..|.+|++...+ +.....+..+ ..++++... ++++++|.....+.++..+.
T Consensus 98 -~~~---------lv~~~g~~l~v~~l~~~~~l~~~~~~~~~------~~i~sl~~~---~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 98 -NGR---------LVVAVGNKLYVYDLDNSKTLLKKAFYDSP------FYITSLSVF---KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp -TTE---------EEEEETTEEEEEEEETTSSEEEEEEE-BS------SSEEEEEEE---TTEEEEEESSSSEEEEEEET
T ss_pred -CCE---------EEEeecCEEEEEEccCcccchhhheecce------EEEEEEecc---ccEEEEEEcccCEEEEEEEc
Confidence 333 555555699999999886 4444444332 356666654 57999999888898885543
Q ss_pred -ccchhhhh--ccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCC-------C-CceeeecCCCCCCCceEE---Eeec
Q 038533 159 -GVVETQLI--AHDKEVYDICWG-EARVFASVSADGSVRIFDLRDK-------E-HSTIIYESPQPDTPLLRL---AWNK 223 (337)
Q Consensus 159 -~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-------~-~~~~~~~~~~~~~~i~~~---~~~~ 223 (337)
...+..+. .....++++.+- +++.++.+..+|.+.++..... . ........ .....++++ .+.|
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f-~lg~~v~~~~~~~l~~ 237 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSF-HLGDIVNSFRRGSLIP 237 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEE-E-SS-EEEEEE--SS-
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEE-ECCCccceEEEEEeee
Confidence 22122222 234557888887 6679999999999999987632 1 11111111 123556666 4444
Q ss_pred C--CC-----cEEEEEEecCCEEEE
Q 038533 224 Q--DL-----RYMATILMDSNKVVI 241 (337)
Q Consensus 224 ~--~~-----~~l~~~~~d~~~i~i 241 (337)
. .. ..++.++.+|. |..
T Consensus 238 ~~~~~~~~~~~~i~~~T~~G~-Ig~ 261 (321)
T PF03178_consen 238 RSGSSESPNRPQILYGTVDGS-IGV 261 (321)
T ss_dssp -SSSS-TTEEEEEEEEETTS--EEE
T ss_pred cCCCCcccccceEEEEecCCE-EEE
Confidence 1 11 24777778887 663
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.03 E-value=0.0009 Score=59.49 Aligned_cols=164 Identities=16% Similarity=0.156 Sum_probs=98.5
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG- 178 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~- 178 (337)
.+.+.|..+. +...++.-. .....++++| ++.++.+.+.+. +.+..+..+...... ..+.|+
T Consensus 216 ~vSvID~etm--eV~~qV~Vd------gnpd~v~~sp-dGk~afvTsyNs-------E~G~tl~em~a~e~d-~~vvfni 278 (635)
T PRK02888 216 LFTAVDAETM--EVAWQVMVD------GNLDNVDTDY-DGKYAFSTCYNS-------EEGVTLAEMMAAERD-WVVVFNI 278 (635)
T ss_pred EEEEEECccc--eEEEEEEeC------CCcccceECC-CCCEEEEeccCc-------ccCcceeeeccccCc-eEEEEch
Confidence 6667777765 333333321 2334578887 888777775321 112212111111111 222232
Q ss_pred --------CCcEEEEEcCCCeEEEEECCC-----CCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECC
Q 038533 179 --------EARVFASVSADGSVRIFDLRD-----KEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR 245 (337)
Q Consensus 179 --------~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~ 245 (337)
++++... .++.|.+.|.++ .+....+.. ......+.++| +++++++++.-...+.|+|+.
T Consensus 279 ~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPV----GKsPHGV~vSP-DGkylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 279 ARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPV----PKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVR 351 (635)
T ss_pred HHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEEC----CCCccceEECC-CCCEEEEeCCCCCcEEEEECh
Confidence 3555444 357899999998 333333332 25678899999 999888877655459999998
Q ss_pred CCCC-----------CeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 246 SPTL-----------PVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 246 ~~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
+... .+.+... .......+|.++|. ...|-.-|..|..|++.
T Consensus 352 k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~kwn~~ 404 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIE 404 (635)
T ss_pred hhhhhhhccCCccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeEEEehH
Confidence 7432 1222222 22345678999998 88888999999999998
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.01 E-value=0.0017 Score=56.56 Aligned_cols=171 Identities=12% Similarity=0.208 Sum_probs=91.6
Q ss_pred CCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceee
Q 038533 127 APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTII 206 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 206 (337)
.....+.++| +++.+++++ ||...++.....+. ...+.-...+|...+.+|+-...+.|.++.--..+....+
T Consensus 33 ~~p~~ls~np-ngr~v~V~g-~geY~iyt~~~~r~-----k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 33 IYPQSLSHNP-NGRFVLVCG-DGEYEIYTALAWRN-----KAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp S--SEEEE-T-TSSEEEEEE-TTEEEEEETTTTEE-----EEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT---
T ss_pred cCCeeEEECC-CCCEEEEEc-CCEEEEEEccCCcc-----cccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEE
Confidence 4577899999 889888865 68888887332221 1234556788886566787777899999633222221222
Q ss_pred ecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEE
Q 038533 207 YESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIW 286 (337)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 286 (337)
... ..+..+- .|.+|...+.+ . |.+||..+ ++.+..+.. .+|..+.|+++++ +++..+. ..+.|+
T Consensus 106 ~~~----~~~~~If----~G~LL~~~~~~-~-i~~yDw~~-~~~i~~i~v--~~vk~V~Ws~~g~-~val~t~-~~i~il 170 (443)
T PF04053_consen 106 KLP----FSVEKIF----GGNLLGVKSSD-F-ICFYDWET-GKLIRRIDV--SAVKYVIWSDDGE-LVALVTK-DSIYIL 170 (443)
T ss_dssp --S----S-EEEEE-----SSSEEEEETT-E-EEEE-TTT---EEEEESS---E-EEEEE-TTSS-EEEEE-S--SEEEE
T ss_pred cCC----cccceEE----cCcEEEEECCC-C-EEEEEhhH-cceeeEEec--CCCcEEEEECCCC-EEEEEeC-CeEEEE
Confidence 111 2233332 26777776555 5 99999998 667777763 3489999999999 8887774 478888
Q ss_pred eCCCCCC--CCCCCCC-ceeee-eCCCceeEEEEccC
Q 038533 287 ELPLPPV--AGPNGID-PMSMY-SAGSEINQLQWSPA 319 (337)
Q Consensus 287 ~~~~~~~--~~~~~~~-~~~~~-~~~~~v~~~~~~~~ 319 (337)
+.+.... ....|.+ .+... .-...|.+..|..+
T Consensus 171 ~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 171 KYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp EE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred EecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 7762100 0001111 23222 22678999999877
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.01 E-value=0.00098 Score=57.80 Aligned_cols=168 Identities=11% Similarity=0.147 Sum_probs=88.0
Q ss_pred cEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCc-----eEEEeecC
Q 038533 150 TCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPL-----LRLAWNKQ 224 (337)
Q Consensus 150 ~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~ 224 (337)
.|++|+. .|+.+..+.-..+.+.++.|++...|+....||.+++||+.... ............+ ....+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~--~fsl~~~i~~~~v~e~~i~~~~~~~- 137 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF--QFSLGEEIEEEKVLECRIFAIWFYK- 137 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce--eechhhhccccCcccccccccccCC-
Confidence 4999986 56666665544488999999977778888899999999997443 1111110111122 2222221
Q ss_pred CCcEEEEEEecCCEEEEEECCCCCCCeEEe---ec-----ccc-eeeE-EEeCCCCCCeEEEEcCCCcEEEEeCCCCCCC
Q 038533 225 DLRYMATILMDSNKVVILDIRSPTLPVAEL---ER-----HRA-CVNA-IAWAPQSRRHICSVGDDSQAFIWELPLPPVA 294 (337)
Q Consensus 225 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~---~~-----~~~-~v~~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 294 (337)
+|-.++ ..++. +.+..-.......+.+ .. +.. .... ..++.+.. ..+....++.+.+-+-. ...
T Consensus 138 ~GivvL--t~~~~-~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~--~~~ 211 (410)
T PF04841_consen 138 NGIVVL--TGNNR-FYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDEN--SFK 211 (410)
T ss_pred CCEEEE--CCCCe-EEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEcc--ccc
Confidence 332222 33444 4433221101001111 10 000 0011 22344444 44444445555544433 100
Q ss_pred CCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 295 GPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
. ....+++..++.||++++++.-..+|.+.|..
T Consensus 212 ------~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~s 244 (410)
T PF04841_consen 212 ------Q---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVS 244 (410)
T ss_pred ------c---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEE
Confidence 0 12346899999999999888888888887653
No 343
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.01 E-value=0.0036 Score=53.44 Aligned_cols=211 Identities=17% Similarity=0.243 Sum_probs=113.4
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhh-hhc-----------
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQ-LIA----------- 167 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~----------- 167 (337)
.+.|||+.+++.+.+... . ..+....|+| +++.++-.. ++.|.+++..+++..+. ..+
T Consensus 24 ~y~i~d~~~~~~~~l~~~---~-----~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dw 93 (353)
T PF00930_consen 24 DYYIYDIETGEITPLTPP---P-----PKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDW 93 (353)
T ss_dssp EEEEEETTTTEEEESS-E---E-----TTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--H
T ss_pred eEEEEecCCCceEECcCC---c-----cccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccce
Confidence 788999999843333322 2 6788999999 899988876 67899999876643211 111
Q ss_pred ----c-CCceeEEEeC-CCcEEEEEcCC------------------------------------CeEEEEECCCCCCcee
Q 038533 168 ----H-DKEVYDICWG-EARVFASVSAD------------------------------------GSVRIFDLRDKEHSTI 205 (337)
Q Consensus 168 ----~-~~~v~~~~~~-~~~~l~~~~~d------------------------------------g~i~iwd~~~~~~~~~ 205 (337)
. -+.-.++-|+ ++++|+....| -.+.++|+.+++....
T Consensus 94 vyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~ 173 (353)
T PF00930_consen 94 VYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTEL 173 (353)
T ss_dssp HHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE
T ss_pred eccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEe
Confidence 0 1223567788 67766654332 1244556655553221
Q ss_pred eec--CCCCCCCceEEEeecCCCcEEEEEEecC--C--EEEEEECCCCCCCeEEeeccccee---eEEEeC-CCCCCeEE
Q 038533 206 IYE--SPQPDTPLLRLAWNKQDLRYMATILMDS--N--KVVILDIRSPTLPVAELERHRACV---NAIAWA-PQSRRHIC 275 (337)
Q Consensus 206 ~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~d~--~--~i~i~d~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~~l~ 275 (337)
... .......+..+.|.+ ++..|+..-.+. . .+.++|..+..............| ....|. +++..+|.
T Consensus 174 ~~~~~~~~~~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~ 252 (353)
T PF00930_consen 174 DPPNSLNPQDYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLW 252 (353)
T ss_dssp ---HHHHTSSEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEE
T ss_pred eeccccCCCccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEE
Confidence 111 012345678899998 777444433332 2 466778876332221112222222 345554 66665777
Q ss_pred EEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeE-EEEccCCCceEEEE
Q 038533 276 SVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQ-LQWSPAQPDWLAIA 327 (337)
Q Consensus 276 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~ 327 (337)
....||--+||-++... ..+..+....-.|.. +.|++++..++-.+
T Consensus 253 ~s~~~G~~hly~~~~~~------~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a 299 (353)
T PF00930_consen 253 ISERDGYRHLYLYDLDG------GKPRQLTSGDWEVTSILGWDEDNNRIYFTA 299 (353)
T ss_dssp EEETTSSEEEEEEETTS------SEEEESS-SSS-EEEEEEEECTSSEEEEEE
T ss_pred EEEcCCCcEEEEEcccc------cceeccccCceeecccceEcCCCCEEEEEe
Confidence 77788876666655212 112333334445644 67888876665444
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.0018 Score=56.19 Aligned_cols=196 Identities=13% Similarity=0.169 Sum_probs=114.4
Q ss_pred CCCCCCeEEEecCCCCcccCcCCccEEEEeC----C--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCe
Q 038533 68 DHPYPPTKLMFDPNSSSRKSSSNRHLLASSG----D--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKR 141 (337)
Q Consensus 68 ~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~----~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 141 (337)
.-...+..-+|+|++. .++.-. . .+.++++.+++...+..+.++ -..-+|+| +++.
T Consensus 190 ~~~~~~~~p~ws~~~~---------~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~--------~~~P~fsp-DG~~ 251 (425)
T COG0823 190 DSGSLILTPAWSPDGK---------KLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN--------NGAPAFSP-DGSK 251 (425)
T ss_pred ccCcceeccccCcCCC---------ceEEEEEecCCCceEEEEeccCCccceeeccCCc--------cCCccCCC-CCCE
Confidence 3345566778999988 443321 2 699999999865555555543 34578999 6665
Q ss_pred EE-EeeCCCc--EEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcC-CCe--EEEEECCCCCCceeeecCCCCCC
Q 038533 142 IG-TCSIDTT--CTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSA-DGS--VRIFDLRDKEHSTIIYESPQPDT 214 (337)
Q Consensus 142 l~-~~~~dg~--i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~ 214 (337)
|+ +...||. |.+.|+..+. +..+....+.-..=.|+ +|+.++..+. .|. |.++|............. .
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~----~ 326 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSG----G 326 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccC----C
Confidence 54 4456665 5566776665 33344333333355677 6777776554 444 666677666643333322 2
Q ss_pred CceEEEeecCCCcEEEEEEecCC--EEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 215 PLLRLAWNKQDLRYMATILMDSN--KVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 215 ~i~~~~~~~~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
.-..-.|+| ++++++..+..++ .|.+.|+.+... ++.+. .......-.|.|++..++.+.+.-+.=.++.+.
T Consensus 327 ~~~~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s 400 (425)
T COG0823 327 GNSNPVWSP-DGDKIVFESSSGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFSSGQGGGSVLSLVS 400 (425)
T ss_pred CCcCccCCC-CCCEEEEEeccCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEeccCCCCceEEEee
Confidence 222778999 9999888775433 267777766443 33333 334445667888888444444333333344333
No 345
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=5.8e-05 Score=65.52 Aligned_cols=93 Identities=16% Similarity=0.323 Sum_probs=76.6
Q ss_pred CCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCcee-EEEeC-CCcEEEEEcCCCeEEEEECCCCCCce
Q 038533 127 APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVY-DICWG-EARVFASVSADGSVRIFDLRDKEHST 204 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~-~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 204 (337)
..|.-+.|+| ...++|.+..+|.|.++.++ .+.+.++.-+...++ +++|. +|+.+++|-.||+|++.|..++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577899999 99999999999999999987 666777776666777 99999 89999999999999999999987655
Q ss_pred eeecCCCCCCCceEEEeec
Q 038533 205 IIYESPQPDTPLLRLAWNK 223 (337)
Q Consensus 205 ~~~~~~~~~~~i~~~~~~~ 223 (337)
.... .....|.++.|.+
T Consensus 99 ~~~~--s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLF--SVETDISKGIWDR 115 (665)
T ss_pred cccc--ccccchheeeccc
Confidence 4221 2346788888864
No 346
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.88 E-value=0.00084 Score=45.41 Aligned_cols=100 Identities=12% Similarity=0.170 Sum_probs=66.9
Q ss_pred eeEEEeecCCC---CeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCcee
Q 038533 129 LTSFDWNEIEP---KRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTI 205 (337)
Q Consensus 129 i~~~~~~~~~~---~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 205 (337)
|+++++...++ +.|++|+.|..|++|+- .+.+..+.. .+.|.+++-.....|+.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~Rl---- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGGGRFAYALANGTVGVYDRSQRL---- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCCCEEEEEecCCEEEEEeCccee----
Confidence 55666554333 68999999999999984 355666653 456888887766889999999999999864332
Q ss_pred eecCCCCCCCceEEEeecCCC---cEEEEEEecCC
Q 038533 206 IYESPQPDTPLLRLAWNKQDL---RYMATILMDSN 237 (337)
Q Consensus 206 ~~~~~~~~~~i~~~~~~~~~~---~~l~~~~~d~~ 237 (337)
...+ .+..+.++++...++ ..|++|-.+|.
T Consensus 75 -WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGk 107 (111)
T PF14783_consen 75 -WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGK 107 (111)
T ss_pred -eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCe
Confidence 1111 123466666653222 25777776765
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.86 E-value=0.0021 Score=55.15 Aligned_cols=200 Identities=12% Similarity=0.065 Sum_probs=108.8
Q ss_pred CeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccch-------------------------------------------hh
Q 038533 128 PLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVE-------------------------------------------TQ 164 (337)
Q Consensus 128 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~-------------------------------------------~~ 164 (337)
.|+.+.|.+ +...|++|...|.|.+|.....+.- ..
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 588999998 7788999999999999865432110 00
Q ss_pred hhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeec-----CCCCCCCceEEEeec----CCC---cEEEEE
Q 038533 165 LIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYE-----SPQPDTPLLRLAWNK----QDL---RYMATI 232 (337)
Q Consensus 165 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~i~~~~~~~----~~~---~~l~~~ 232 (337)
+....++|++++.++=.+++.|..+|.+.+.|+|.+..+..... .......++++.|.. .++ -.+++|
T Consensus 82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 11235679999998877999999999999999998864433211 112345678888863 122 467777
Q ss_pred EecCCEEEEEECCC-C-CC----CeEEeecccceeeEEE-eCCC-C-------------------CCeEEEEcCCCcEEE
Q 038533 233 LMDSNKVVILDIRS-P-TL----PVAELERHRACVNAIA-WAPQ-S-------------------RRHICSVGDDSQAFI 285 (337)
Q Consensus 233 ~~d~~~i~i~d~~~-~-~~----~~~~~~~~~~~v~~~~-~~~~-~-------------------~~~l~~~~~dg~i~i 285 (337)
...|. +.+|.+-- . +. .......+.++|..+. ++.+ | +.+++++ .+..+++
T Consensus 162 Tn~G~-v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~irv 239 (395)
T PF08596_consen 162 TNSGN-VLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIRV 239 (395)
T ss_dssp ETTSE-EEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEEE
T ss_pred eCCCC-EEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceEE
Confidence 77776 99997752 1 11 1111113445555443 3211 1 1134444 4778999
Q ss_pred EeCCCCCCCCCCCCCceeeeeCCCceeEEEEc-----cCCCceEEEEcCCcEEEEeC
Q 038533 286 WELPLPPVAGPNGIDPMSMYSAGSEINQLQWS-----PAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 286 w~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~d~~i~iw~l 337 (337)
+... +.. ..............+.+- ..+..|++...+|.++++.|
T Consensus 240 ~~~~--~~k-----~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 240 FKPP--KSK-----GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp E-TT----------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred EeCC--CCc-----ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 9888 311 111222221223344442 34556777789999999865
No 348
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.0021 Score=55.78 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=91.0
Q ss_pred CCeeEEEeecCCCCeEEEee---CC-CcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEE-EEcCCCe--EEEEECC
Q 038533 127 APLTSFDWNEIEPKRIGTCS---ID-TTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFA-SVSADGS--VRIFDLR 198 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~---~d-g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~-~~~~dg~--i~iwd~~ 198 (337)
..+..-+|+| ++..++-.. .. ..+.++|+++++...... ..+.-..-+|+ +++.++ +...||. |.++|+.
T Consensus 193 ~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 193 SLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred cceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 5667778888 666544442 22 358999999887544433 23334456788 566555 4555665 6667877
Q ss_pred CCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC--EEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEE
Q 038533 199 DKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN--KVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICS 276 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 276 (337)
...... +... .+.-..-.|+| +|+.++..+..++ +|.++|... .....+......-..-.|+|+|+ +++.
T Consensus 271 ~~~~~~-Lt~~---~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g--~~~~riT~~~~~~~~p~~SpdG~-~i~~ 342 (425)
T COG0823 271 GKNLPR-LTNG---FGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEG--SQVTRLTFSGGGNSNPVWSPDGD-KIVF 342 (425)
T ss_pred CCccee-cccC---CccccCccCCC-CCCEEEEEeCCCCCcceEEECCCC--CceeEeeccCCCCcCccCCCCCC-EEEE
Confidence 776333 2222 22333678999 8888887776655 366666654 22344433333333778999999 5555
Q ss_pred Ec-CCCc--EEEEeCC
Q 038533 277 VG-DDSQ--AFIWELP 289 (337)
Q Consensus 277 ~~-~dg~--i~iw~~~ 289 (337)
.+ .+|. |.+.++.
T Consensus 343 ~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 343 ESSSGGQWDIDKNDLA 358 (425)
T ss_pred EeccCCceeeEEeccC
Confidence 44 3455 4455554
No 349
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.014 Score=48.35 Aligned_cols=197 Identities=10% Similarity=-0.023 Sum_probs=111.0
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeCCeEEEEecCCCCc-cceeeecCCCCCcccCCeeEEEeecCCCCeEEEe
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGDFLRLWDVGDSSI-EPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTC 145 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~~v~vw~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 145 (337)
+.+...+.++..-..+. .|+++...+.+++.+++.. ........ .......+.....| ++.+.++.
T Consensus 62 ~~~p~~~~~~~~~d~~g---------~Lv~~~~g~~~~~~~~~~~~t~~~~~~~---~~~~~r~ND~~v~p-dG~~wfgt 128 (307)
T COG3386 62 FPSPGGFSSGALIDAGG---------RLIACEHGVRLLDPDTGGKITLLAEPED---GLPLNRPNDGVVDP-DGRIWFGD 128 (307)
T ss_pred EECCCCcccceeecCCC---------eEEEEccccEEEeccCCceeEEeccccC---CCCcCCCCceeEcC-CCCEEEeC
Confidence 34555566666555555 7777776777777765532 12211111 11113455677777 76665554
Q ss_pred eC-----------CCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcC-CCeEEEEECCC--CCC--ceeeec
Q 038533 146 SI-----------DTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSA-DGSVRIFDLRD--KEH--STIIYE 208 (337)
Q Consensus 146 ~~-----------dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~-dg~i~iwd~~~--~~~--~~~~~~ 208 (337)
.. -|.|+.+|. .+..++.+..+-..-+.++|+ +++.|+.+.. .+.|.-|++.. ... ......
T Consensus 129 ~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~ 207 (307)
T COG3386 129 MGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD 207 (307)
T ss_pred CCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE
Confidence 43 133444443 455555555545566889999 6766666654 47888887763 111 011111
Q ss_pred CCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeC-CCCCCeEEEEcCC
Q 038533 209 SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWA-PQSRRHICSVGDD 280 (337)
Q Consensus 209 ~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d 280 (337)
.....+..-.++... ++.+.+++...+..|..|+.. ++++..+......+++++|- |+.+.+++|+...
T Consensus 208 ~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd--G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 208 FDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD--GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred ccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC--CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 111334445566665 777776555555349999987 55677776665677888885 4445355555443
No 350
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.81 E-value=0.0009 Score=61.62 Aligned_cols=131 Identities=11% Similarity=0.059 Sum_probs=85.6
Q ss_pred cCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeec----CCCcEEEEEEecCCEEEEEECCCCCCCeEEeec----cc
Q 038533 187 SADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNK----QDLRYMATILMDSNKVVILDIRSPTLPVAELER----HR 258 (337)
Q Consensus 187 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~----~~ 258 (337)
.....|+-.|+..++........ ...++..++-.. .+..-.++|-.+.. +..||.|-.+..+..-.. ..
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~--~~~~v~~~~p~~K~aqlt~e~tflGls~n~-lfriDpR~~~~k~v~~~~k~Y~~~ 577 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVH--DDIPVVDIAPDSKFAQLTNEQTFLGLSDNS-LFRIDPRLSGNKLVDSQSKQYSSK 577 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecC--CCcceeEecccccccccCCCceEEEECCCc-eEEeccCCCCCceeeccccccccC
Confidence 45678999999999866554433 223344443221 12334455555666 999999975432221112 23
Q ss_pred ceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcC
Q 038533 259 ACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFS 329 (337)
Q Consensus 259 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 329 (337)
...+|++-+.+| +||+|+.+|.||+||-- +. + ....+.+-..+|..|..+.||+++++++..
T Consensus 578 ~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~-g~--~----AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 578 NNFSCFATTEDG--YIAVGSNKGDIRLYDRL-GK--R----AKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred CCceEEEecCCc--eEEEEeCCCcEEeeccc-ch--h----hhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 456778777777 69999999999999943 11 0 122445678999999999999998888754
No 351
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.78 E-value=7.1e-05 Score=40.13 Aligned_cols=37 Identities=24% Similarity=0.563 Sum_probs=32.6
Q ss_pred CeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEe
Q 038533 250 PVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWE 287 (337)
Q Consensus 250 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 287 (337)
+...+..|...|.++.|++.+. ++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 4566677888999999999987 999999999999996
No 352
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.76 E-value=0.0055 Score=54.72 Aligned_cols=107 Identities=7% Similarity=0.044 Sum_probs=71.0
Q ss_pred CCcEEEEEEecCCEEEEEECCC----CCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCC---
Q 038533 225 DLRYMATILMDSNKVVILDIRS----PTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPN--- 297 (337)
Q Consensus 225 ~~~~l~~~~~d~~~i~i~d~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~--- 297 (337)
++++...+ ++. |.+.|.++ ....+..+.. ......+.++|||+++++++..++.+.|.|+. +.....
T Consensus 287 dGK~~~V~--gn~-V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSPDGkylyVanklS~tVSVIDv~--k~k~~~~~~ 360 (635)
T PRK02888 287 AGKFKTIG--GSK-VPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVR--KLDDLFDGK 360 (635)
T ss_pred CCCEEEEC--CCE-EEEEECCccccCCcceEEEEEC-CCCccceEECCCCCEEEEeCCCCCcEEEEECh--hhhhhhhcc
Confidence 66666652 344 99999987 2344444543 45678999999999666777789999999998 533200
Q ss_pred --CCCce-eeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 298 --GIDPM-SMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 298 --~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
.+... ....-.......+|.++|..+.+.--|..|-.|++
T Consensus 361 ~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 361 IKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred CCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 00011 11112344577899999975556668999999985
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.70 E-value=0.0048 Score=41.84 Aligned_cols=102 Identities=9% Similarity=0.063 Sum_probs=67.6
Q ss_pred ceEEEeecCC---CcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCC
Q 038533 216 LLRLAWNKQD---LRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPP 292 (337)
Q Consensus 216 i~~~~~~~~~---~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 292 (337)
|.++++...+ .+.|++|+.|.. |++|+-. ..+.++.. ...|++++-...+ .++.+-.+|+|-+|+.. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~-IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~--~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFE-IRVFKGD---EIVAEITE-TDKVTSLCSLGGG--RFAYALANGTVGVYDRS--Q 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcE-EEEEeCC---cEEEEEec-ccceEEEEEcCCC--EEEEEecCCEEEEEeCc--c
Confidence 4566655433 368999999998 9999854 35666654 4567777776664 69999999999999876 2
Q ss_pred CCCCCCCCceeeeeCCCceeEEEEccCC----CceEEEEcCCcEEE
Q 038533 293 VAGPNGIDPMSMYSAGSEINQLQWSPAQ----PDWLAIAFSNKMQL 334 (337)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~i 334 (337)
.+-.......+.++++..-. +.|+++-.+|.|-+
T Consensus 73 --------RlWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 --------RLWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred --------eeeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 12112233346666655422 25778878888753
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00027 Score=61.58 Aligned_cols=94 Identities=14% Similarity=0.262 Sum_probs=72.7
Q ss_pred CCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceee-EEEeCCCCCCeEEEEcCCCcEEEEeCCCCC
Q 038533 214 TPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVN-AIAWAPQSRRHICSVGDDSQAFIWELPLPP 292 (337)
Q Consensus 214 ~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~ 292 (337)
..+..+.|+| .-.++|.+..+|. |.+..+. .+.+.++.-|...++ +++|.|||+ +||.|-.||+|++.|++.+.
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~ge-lli~R~n--~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGE-LLIHRLN--WQRLWTIPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCc-EEEEEec--cceeEeccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEccCCC
Confidence 5678899999 8899999999998 9888887 345777776777777 999999999 99999999999999999433
Q ss_pred CCCCCCCCceeeeeCCCceeEEEEcc
Q 038533 293 VAGPNGIDPMSMYSAGSEINQLQWSP 318 (337)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~v~~~~~~~ 318 (337)
.-. + ....-...|..+-|.|
T Consensus 96 ~l~--~----~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLV--S----FLFSVETDISKGIWDR 115 (665)
T ss_pred cee--c----cccccccchheeeccc
Confidence 211 0 1122345677777763
No 355
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.63 E-value=8.2e-05 Score=56.63 Aligned_cols=141 Identities=12% Similarity=0.005 Sum_probs=84.2
Q ss_pred EEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeeccccee
Q 038533 182 VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACV 261 (337)
Q Consensus 182 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v 261 (337)
.+..-+.+|.|+-++++..+........ +... ..+ +..+.-+++|+.++. |++|.....+........-...|
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~--~~e~-~~v---~~~~~~~~vG~~dg~-v~~~n~n~~g~~~d~~~s~~e~i 104 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERF--IDEG-QRV---VTASAKLMVGTSDGA-VYVFNWNLEGAHSDRVCSGEESI 104 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhh--hhcc-eee---cccCceEEeecccce-EEEecCCccchHHHhhhcccccc
Confidence 4556677899999888876532221111 1111 111 225678899999998 99998874333222222222333
Q ss_pred eEE-EeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCC-CceeEEEEccCCCceEEE--EcCCcEEEEeC
Q 038533 262 NAI-AWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAG-SEINQLQWSPAQPDWLAI--AFSNKMQLLKV 337 (337)
Q Consensus 262 ~~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~d~~i~iw~l 337 (337)
.++ .-..++. +..+++.||.|+.|++...+ ..-....|. .++..+..+..++.+..+ +.|..++.|+|
T Consensus 105 ~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p~k-------~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 105 DLGIPNGRDSS-LGCVGAQDGRIRACNIKPNK-------VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred eeccccccccc-eeEEeccCCceeeeccccCc-------eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 332 2223333 88999999999999998322 122333455 566666666666666666 77888888875
No 356
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.59 E-value=0.007 Score=47.37 Aligned_cols=123 Identities=11% Similarity=-0.058 Sum_probs=83.5
Q ss_pred CCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCce
Q 038533 138 EPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLL 217 (337)
Q Consensus 138 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~ 217 (337)
...+++.|+..+.+.-.|..+|+....-. -..++.+-+.--++.++.|...|.+++.+..++.....+... +.|.
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~----~~vk 96 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL----ETVK 96 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh----hhhc
Confidence 45788899999999999999998654332 233444433334678999999999999999999655444333 2222
Q ss_pred -EEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCC
Q 038533 218 -RLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAP 268 (337)
Q Consensus 218 -~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~ 268 (337)
.....+ ++..+..++.|++ .+..|.++ ...+...+...+...+-+..|
T Consensus 97 ~~a~~d~-~~glIycgshd~~-~yalD~~~-~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 97 VRAQCDF-DGGLIYCGSHDGN-FYALDPKT-YGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred cceEEcC-CCceEEEecCCCc-EEEecccc-cceEEecccCCceeccceecC
Confidence 223344 8999999999999 99999998 445555543333333334444
No 357
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.51 E-value=0.00029 Score=37.57 Aligned_cols=37 Identities=27% Similarity=0.502 Sum_probs=31.5
Q ss_pred ceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEe
Q 038533 113 PVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWD 155 (337)
Q Consensus 113 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d 155 (337)
+...+..|. ..|.++.|++ .+..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~-----~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHT-----GPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecC-----CceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 455566666 8899999998 779999999999999996
No 358
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.50 E-value=0.042 Score=45.50 Aligned_cols=238 Identities=12% Similarity=0.118 Sum_probs=133.6
Q ss_pred cceEEEeee------eccCcceEEEEEecCCCcc--eecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC--C-
Q 038533 31 GQRIAVGSF------IEDYTNRVDVVSFEPESLS--IKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG--D- 99 (337)
Q Consensus 31 ~~~la~g~~------~~~~d~~i~i~~~~~~~~~--~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~--~- 99 (337)
++.+++++. .+.....|.+||...-... +................++++.+++ ++.... -
T Consensus 47 gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk---------~~~V~N~TPa 117 (342)
T PF06433_consen 47 GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGK---------FLYVQNFTPA 117 (342)
T ss_dssp SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSS---------EEEEEEESSS
T ss_pred CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCc---------EEEEEccCCC
Confidence 566655443 2223667888886654322 2221100011112345678899998 666654 2
Q ss_pred -eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCC-Cccchhh----hhccCCce-
Q 038533 100 -FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIE-KGVVETQ----LIAHDKEV- 172 (337)
Q Consensus 100 -~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~-~~~~~~~----~~~~~~~v- 172 (337)
.|.|-|+..+ +.+..+.-. .+..+- |..+.-|.+-..||.+.-..+. .|+...+ |.....++
T Consensus 118 ~SVtVVDl~~~--kvv~ei~~P-------GC~~iy--P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f 186 (342)
T PF06433_consen 118 TSVTVVDLAAK--KVVGEIDTP-------GCWLIY--PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLF 186 (342)
T ss_dssp EEEEEEETTTT--EEEEEEEGT-------SEEEEE--EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-
T ss_pred CeEEEEECCCC--ceeeeecCC-------CEEEEE--ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccc
Confidence 9999999998 555666542 222222 3233567777789999988887 4443321 11112222
Q ss_pred eEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceee-ecCC--------CCCCCceEEEeecCCCcEEEEEEecC------
Q 038533 173 YDICWG-EARVFASVSADGSVRIFDLRDKEHSTII-YESP--------QPDTPLLRLAWNKQDLRYMATILMDS------ 236 (337)
Q Consensus 173 ~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~--------~~~~~i~~~~~~~~~~~~l~~~~~d~------ 236 (337)
..-++. .+..++..+.+|.|+--|+......... .... =..+...-+++++..+++ ++.-..+
T Consensus 187 ~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl-yvLMh~g~~gsHK 265 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL-YVLMHQGGEGSHK 265 (342)
T ss_dssp S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE-EEEEEE--TT-TT
T ss_pred cccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE-EEEecCCCCCCcc
Confidence 233334 4556777899999999999876521111 1000 011345567888734444 3322221
Q ss_pred ---CEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEE-cCCCcEEEEeCCCC
Q 038533 237 ---NKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSV-GDDSQAFIWELPLP 291 (337)
Q Consensus 237 ---~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~ 291 (337)
..|.++|+.+ ++.+..+.. ..++.+|..+.+.+.+|++. ..++.+.+||...+
T Consensus 266 dpgteVWv~D~~t-~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 266 DPGTEVWVYDLKT-HKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp S-EEEEEEEETTT-TEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred CCceEEEEEECCC-CeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 2588899988 556777653 34788999998877677655 46899999999933
No 359
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.49 E-value=0.052 Score=47.56 Aligned_cols=199 Identities=15% Similarity=0.188 Sum_probs=103.7
Q ss_pred CeeEEEeecCCCCeEEEe-eCCC----cEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCC-----------C
Q 038533 128 PLTSFDWNEIEPKRIGTC-SIDT----TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSAD-----------G 190 (337)
Q Consensus 128 ~i~~~~~~~~~~~~l~~~-~~dg----~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-----------g 190 (337)
.+..+.++| +++++|.+ +..| .|+++|+++++.+...-. ......+.|. +++.|+....+ .
T Consensus 125 ~~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 344678888 88887765 4444 499999999976543211 1112239999 66666555432 2
Q ss_pred eEEEEECCCCCCc-eeeecCCCCCCCceEEEeecCCCcEEEEEEecCC---EEEEEECCCC---CCCeEEeecccceeeE
Q 038533 191 SVRIFDLRDKEHS-TIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN---KVVILDIRSP---TLPVAELERHRACVNA 263 (337)
Q Consensus 191 ~i~iwd~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~---~i~i~d~~~~---~~~~~~~~~~~~~v~~ 263 (337)
.|+.|.+.+.... ..++...........+..++ ++++++.....+. .+++.|+... ......+......+..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 3788888877644 34454433222266788888 8888776555443 3888888863 2334444433333333
Q ss_pred EEeCCCCCCeEEEEc---CCCcEEEEeCCCCCCCCCCCCCceeeeeCCCc--eeEEEEccCCCceEEEE-cCC--cEEEE
Q 038533 264 IAWAPQSRRHICSVG---DDSQAFIWELPLPPVAGPNGIDPMSMYSAGSE--INQLQWSPAQPDWLAIA-FSN--KMQLL 335 (337)
Q Consensus 264 ~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~-~d~--~i~iw 335 (337)
..-+..+. +++... ..+.|.-.++..+... .....+..+... +..+.. .+.+|+..- .++ .|+++
T Consensus 282 ~v~~~~~~-~yi~Tn~~a~~~~l~~~~l~~~~~~----~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~ 354 (414)
T PF02897_consen 282 YVDHHGDR-LYILTNDDAPNGRLVAVDLADPSPA----EWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVY 354 (414)
T ss_dssp EEEEETTE-EEEEE-TT-TT-EEEEEETTSTSGG----GEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEE
T ss_pred EEEccCCE-EEEeeCCCCCCcEEEEecccccccc----cceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEE
Confidence 22222443 444333 2356666666622210 011245555553 444444 444565543 443 45555
Q ss_pred e
Q 038533 336 K 336 (337)
Q Consensus 336 ~ 336 (337)
+
T Consensus 355 ~ 355 (414)
T PF02897_consen 355 D 355 (414)
T ss_dssp E
T ss_pred E
Confidence 4
No 360
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.49 E-value=0.035 Score=44.50 Aligned_cols=160 Identities=9% Similarity=0.101 Sum_probs=101.5
Q ss_pred CCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhc-cCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCce
Q 038533 127 APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIA-HDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHST 204 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 204 (337)
..+.++.|+| +.+.|++......-.|+=...|+.+.++.- .-.....+.+. ++.+.++--.++.+.++.+.......
T Consensus 86 ~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~ 164 (316)
T COG3204 86 ANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVI 164 (316)
T ss_pred ccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEE
Confidence 5699999999 666666666666666666667887776652 12334567787 66677777778888888776553211
Q ss_pred ------eeec-CCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeE--Eeecc-------cceeeEEEeCC
Q 038533 205 ------IIYE-SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVA--ELERH-------RACVNAIAWAP 268 (337)
Q Consensus 205 ------~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~--~~~~~-------~~~v~~~~~~~ 268 (337)
.... ....+.....++|+| ....|+.+-+..- +.||........+. ....+ -..|.++.|++
T Consensus 165 ~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P-~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 165 SAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNP-IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred eccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCC-cEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 1111 112267788999999 5555555555555 66665543221111 11111 23578889998
Q ss_pred CCCCeEEEEcCCCcEEEEeCC
Q 038533 269 QSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 269 ~~~~~l~~~~~dg~i~iw~~~ 289 (337)
....+|+-+.+++.+.-.|..
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred CCCcEEEEecCCceEEEEecC
Confidence 776578888888888777776
No 361
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.49 E-value=0.032 Score=43.88 Aligned_cols=141 Identities=10% Similarity=-0.074 Sum_probs=81.9
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEecCC
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWDVGD 108 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~~~~ 108 (337)
..+++.|+. .+.+.-- +.+.+.+... .....+|.+-+.- -+. +++.|. . .+.+.+.++
T Consensus 23 kT~v~igSH----s~~~~av--d~~sG~~~We----~ilg~RiE~sa~v-vgd---------fVV~GCy~g~lYfl~~~t 82 (354)
T KOG4649|consen 23 KTLVVIGSH----SGIVIAV--DPQSGNLIWE----AILGVRIECSAIV-VGD---------FVVLGCYSGGLYFLCVKT 82 (354)
T ss_pred ceEEEEecC----CceEEEe--cCCCCcEEee----hhhCceeeeeeEE-ECC---------EEEEEEccCcEEEEEecc
Confidence 567777876 7777774 4444443331 1223344433333 344 666655 4 899999999
Q ss_pred CCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeCC-CcEEEEEc
Q 038533 109 SSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGE-ARVFASVS 187 (337)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~ 187 (337)
+ .....+..- ..|.+-+-...++.++..|+.|++.+..|.++..++.+.+...+...+-+..+ ...|+.+.
T Consensus 83 G--s~~w~f~~~------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~ 154 (354)
T KOG4649|consen 83 G--SQIWNFVIL------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAI 154 (354)
T ss_pred h--hheeeeeeh------hhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEe
Confidence 8 344444322 22222221123889999999999999999999888887765444334444443 33455555
Q ss_pred CCCeEEEEECCC
Q 038533 188 ADGSVRIFDLRD 199 (337)
Q Consensus 188 ~dg~i~iwd~~~ 199 (337)
..|.+.--....
T Consensus 155 t~G~vlavt~~~ 166 (354)
T KOG4649|consen 155 TAGAVLAVTKNP 166 (354)
T ss_pred ccceEEEEccCC
Confidence 556554444433
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.48 E-value=0.042 Score=45.08 Aligned_cols=224 Identities=15% Similarity=0.166 Sum_probs=121.6
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCC
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDS 109 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~ 109 (337)
++.|++|+. +| +.+++......... ..+...|..+...|+-. .|++-+| .+.++++..-
T Consensus 7 ~~~L~vGt~----~G-l~~~~~~~~~~~~~------i~~~~~I~ql~vl~~~~---------~llvLsd~~l~~~~L~~l 66 (275)
T PF00780_consen 7 GDRLLVGTE----DG-LYVYDLSDPSKPTR------ILKLSSITQLSVLPELN---------LLLVLSDGQLYVYDLDSL 66 (275)
T ss_pred CCEEEEEEC----CC-EEEEEecCCcccee------EeecceEEEEEEecccC---------EEEEEcCCccEEEEchhh
Confidence 889999985 66 88888832222222 22333499999999887 6666666 9999998765
Q ss_pred Cccceee-ec-------CCCCCcccCCeeEEE-eecCCCCeEEEeeCCCcEEEEeCCCc-----cchhhhhccCCceeEE
Q 038533 110 SIEPVAV-LN-------NSKSSEFCAPLTSFD-WNEIEPKRIGTCSIDTTCTIWDIEKG-----VVETQLIAHDKEVYDI 175 (337)
Q Consensus 110 ~~~~~~~-~~-------~~~~~~~~~~i~~~~-~~~~~~~~l~~~~~dg~i~v~d~~~~-----~~~~~~~~~~~~v~~~ 175 (337)
....... .. .+. ......+..++ -....+...++......|.+|..... +..+.+. -...+.++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i 144 (275)
T PF00780_consen 67 EPVSTSAPLAFPKSRSLPTK-LPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSI 144 (275)
T ss_pred cccccccccccccccccccc-ccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEE
Confidence 3222110 00 000 00013344444 11123333344444568999887653 2233333 35678899
Q ss_pred EeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCC---------CCCCceEEEeecCCCcEEEEEEecCCEEEEEECCC
Q 038533 176 CWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQ---------PDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRS 246 (337)
Q Consensus 176 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~ 246 (337)
+|. ++.++.|..+ ...+.|+.++........... ...++..+... ++.+|++. +.. -.+.|..
T Consensus 145 ~~~-~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~-g~fv~~~- 216 (275)
T PF00780_consen 145 AFL-GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNI-GVFVNKN- 216 (275)
T ss_pred EEe-CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cce-EEEEcCC-
Confidence 998 5566666654 477889997664333211100 11233333432 45555543 332 3344443
Q ss_pred CCCCeE--EeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCC
Q 038533 247 PTLPVA--ELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL 290 (337)
Q Consensus 247 ~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 290 (337)
+.+.+ .+.- ...+.++++. .+ +|++... +.|.||++..
T Consensus 217 -G~~~r~~~i~W-~~~p~~~~~~--~p-yli~~~~-~~iEV~~~~~ 256 (275)
T PF00780_consen 217 -GEPSRKSTIQW-SSAPQSVAYS--SP-YLIAFSS-NSIEVRSLET 256 (275)
T ss_pred -CCcCcccEEEc-CCchhEEEEE--CC-EEEEECC-CEEEEEECcC
Confidence 22222 3332 3355666664 34 6777665 4599999993
No 363
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.0013 Score=56.38 Aligned_cols=142 Identities=11% Similarity=0.092 Sum_probs=94.8
Q ss_pred eEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeCC--------CcEEEEEcCCCeEEEEECCCCCCcee-eecCCC
Q 038533 141 RIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGE--------ARVFASVSADGSVRIFDLRDKEHSTI-IYESPQ 211 (337)
Q Consensus 141 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~--------~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~ 211 (337)
++.++.....++-.|++.|+.+...+-+.. |+-+.+.| ...-+.|-.+..|.-||.|-...... ....+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 455566667788899999999888876665 55565552 12234566788899999995543111 111111
Q ss_pred --CCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 212 --PDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 212 --~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
......|.+- ....++++|+.+|. |++||- ...+....+++-..+|..+..+.+|+++|+|+ +..+.+-++.
T Consensus 427 y~~k~nFsc~aT--T~sG~IvvgS~~Gd-IRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 YSTKNNFSCFAT--TESGYIVVGSLKGD-IRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred cccccccceeee--cCCceEEEeecCCc-EEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 1223444433 36779999999999 999997 33444456777888999999999999555544 5667776665
No 364
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.00045 Score=52.75 Aligned_cols=142 Identities=11% Similarity=0.048 Sum_probs=83.3
Q ss_pred eEEEeeCCCcEEEEeCCCccchhhh-hccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEE
Q 038533 141 RIGTCSIDTTCTIWDIEKGVVETQL-IAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRL 219 (337)
Q Consensus 141 ~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~ 219 (337)
.+..-+.||.|+-++++.-+....- ..+...-..+. -+..++.|+.+|.|.+|.........-.... ....+.++
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~--~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s--~~e~i~~~ 107 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT--ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS--GEESIDLG 107 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecc--cCceEEeecccceEEEecCCccchHHHhhhc--ccccceec
Confidence 3444466788887777644321111 11111111111 2678999999999999998733221111111 12333333
Q ss_pred EeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeeccc-ceeeEEEeCCCCCCeEEEE--cCCCcEEEEeCC
Q 038533 220 AWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHR-ACVNAIAWAPQSRRHICSV--GDDSQAFIWELP 289 (337)
Q Consensus 220 ~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~--~~dg~i~iw~~~ 289 (337)
.-.-.++.+..+++.++. |+.|++.. .+.+.....|. .++..+..+..++ +++.+ |.|..++.|++.
T Consensus 108 Ip~~~~~~~~c~~~~dg~-ir~~n~~p-~k~~g~~g~h~~~~~e~~ivv~sd~-~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 108 IPNGRDSSLGCVGAQDGR-IRACNIKP-NKVLGYVGQHNFESGEELIVVGSDE-FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cccccccceeEEeccCCc-eeeecccc-CceeeeeccccCCCcceeEEecCCc-eEEeeccccchhhhhcchh
Confidence 333225568888999998 99999976 44455555565 4555555555555 67666 777888888887
No 365
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.43 E-value=0.018 Score=48.44 Aligned_cols=224 Identities=12% Similarity=0.044 Sum_probs=105.6
Q ss_pred CeEEEecCCCCcccCcCCccEEEEeC-C---eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCC
Q 038533 73 PTKLMFDPNSSSRKSSSNRHLLASSG-D---FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSID 148 (337)
Q Consensus 73 i~~i~~~~~~~~~~~~~~~~~l~~~~-~---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 148 (337)
.+.=+|.++++ .+|.++. + .+.+.|+.+++...+....+ .......++| +.+.++-...+
T Consensus 38 F~~~~ft~dG~--------kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g-------~~~~g~~~s~-~~~~~~Yv~~~ 101 (386)
T PF14583_consen 38 FYQNCFTDDGR--------KLLFASDFDGNRNLYLLDLATGEITQLTDGPG-------DNTFGGFLSP-DDRALYYVKNG 101 (386)
T ss_dssp TTS--B-TTS---------EEEEEE-TTSS-EEEEEETTT-EEEE---SS--------B-TTT-EE-T-TSSEEEEEETT
T ss_pred ecCCCcCCCCC--------EEEEEeccCCCcceEEEEcccCEEEECccCCC-------CCccceEEec-CCCeEEEEECC
Confidence 33446778887 4666554 3 88999999984333333222 1222455566 66666555556
Q ss_pred CcEEEEeCCCccchhhhhccCCceeEEEeC---CCcEEEEEc----------------------CCCeEEEEECCCCCCc
Q 038533 149 TTCTIWDIEKGVVETQLIAHDKEVYDICWG---EARVFASVS----------------------ADGSVRIFDLRDKEHS 203 (337)
Q Consensus 149 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~~----------------------~dg~i~iwd~~~~~~~ 203 (337)
..|+-.|+++.+....+......+-...|. ++..++..- -...|.-.|+.+++..
T Consensus 102 ~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 102 RSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp TEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred CeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee
Confidence 789999999887554444445444445554 344433221 1234666788877744
Q ss_pred eeeecCCCCCCCceEEEeecCCCcEEEEEEecCC---EEEEEECCCCCCCeEEeeccc--ceeeEEEeCCCCCCeEEEEc
Q 038533 204 TIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN---KVVILDIRSPTLPVAELERHR--ACVNAIAWAPQSRRHICSVG 278 (337)
Q Consensus 204 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~---~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~ 278 (337)
..+.. ...+..+.|+|.+...|+.|.+..- .-+||=+++.+.....+..+. ..+.-=-|.|+|..+...+-
T Consensus 182 ~v~~~----~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~ 257 (386)
T PF14583_consen 182 VVFED----TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSY 257 (386)
T ss_dssp EEEEE----SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred EEEec----CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEee
Confidence 44432 3678899999976666666554221 125676665454444443332 23344468999985444332
Q ss_pred ----CCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEE
Q 038533 279 ----DDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAI 326 (337)
Q Consensus 279 ----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 326 (337)
.+..|.-++.. +.. ...+ ....+-..+.-++||. |+++
T Consensus 258 ~~~~~~~~i~~~d~~--t~~------~~~~-~~~p~~~H~~ss~Dg~-L~vG 299 (386)
T PF14583_consen 258 TPGGQDFWIAGYDPD--TGE------RRRL-MEMPWCSHFMSSPDGK-LFVG 299 (386)
T ss_dssp ETTT--EEEEEE-TT--T--------EEEE-EEE-SEEEEEE-TTSS-EEEE
T ss_pred cCCCCceEEEeeCCC--CCC------ceEE-EeCCceeeeEEcCCCC-EEEe
Confidence 23345555665 311 1111 1222455667778886 5554
No 366
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.012 Score=50.78 Aligned_cols=133 Identities=11% Similarity=0.046 Sum_probs=87.2
Q ss_pred EEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCc-------EEEEEEecCCEEEEEECCCCCC-CeEE
Q 038533 182 VFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLR-------YMATILMDSNKVVILDIRSPTL-PVAE 253 (337)
Q Consensus 182 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~l~~~~~d~~~i~i~d~~~~~~-~~~~ 253 (337)
+|.++.....++-.|++.++.+...... ..|.-+.+.| +.+ .-++|-.+.+ |.-||.|-.+. .+..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~----~di~mv~~t~-d~K~~Ql~~e~TlvGLs~n~-vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFE----DDINMVDITP-DFKFAQLTSEQTLVGLSDNS-VFRIDPRVQGKNKLAV 421 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeecc----CCcceeeccC-CcchhcccccccEEeecCCc-eEEecccccCcceeee
Confidence 4556666677888899888865554332 2366666666 322 2334555666 99999996554 2333
Q ss_pred eeccc----ceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcC
Q 038533 254 LERHR----ACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFS 329 (337)
Q Consensus 254 ~~~~~----~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 329 (337)
.++|. ....|++-..+| ++++|+.+|.|++||--... ....+.+...+|..+..+.+|+++++++..
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdri~~~-------AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDRIGRR-------AKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eeccccccccccceeeecCCc--eEEEeecCCcEEeehhhhhh-------hhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 33332 245566655555 79999999999999985111 123556778899999999999988877643
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.044 Score=45.42 Aligned_cols=196 Identities=11% Similarity=0.063 Sum_probs=104.7
Q ss_pred EeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCC-
Q 038533 133 DWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESP- 210 (337)
Q Consensus 133 ~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~- 210 (337)
.|.+..+.++.+--..+.|+-|+..+++. ..+. +.+.+.++..- .+..|+++.. .+.+++...+.....+....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccC
Confidence 45552333566666778888898876642 2222 23334444444 4555655543 35567765554422222211
Q ss_pred -CCCCCceEEEeecCCCcEEEEEEe-----c----C-CEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcC
Q 038533 211 -QPDTPLLRLAWNKQDLRYMATILM-----D----S-NKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGD 279 (337)
Q Consensus 211 -~~~~~i~~~~~~~~~~~~l~~~~~-----d----~-~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 279 (337)
......+.+...| ++.+.+.... . . ..|+.+|. .+..++.+..+-..-+.++|||+++.++++=+.
T Consensus 107 ~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p--~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 107 GLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP--DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC--CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 1224566778888 7776655433 1 0 12444443 244455555555667899999999845555556
Q ss_pred CCcEEEEeCCCCCCCCCCCCCceeee-eCCCceeEEEEccCCCceEEEEcCC-cEEEEe
Q 038533 280 DSQAFIWELPLPPVAGPNGIDPMSMY-SAGSEINQLQWSPAQPDWLAIAFSN-KMQLLK 336 (337)
Q Consensus 280 dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~-~i~iw~ 336 (337)
.+.|.-|++...... ..+....... ...+..-.++...+|..++++..+| .|.+|+
T Consensus 184 ~~~i~r~~~d~~~g~-~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 184 ANRIHRYDLDPATGP-IGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred CCeEEEEecCcccCc-cCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 688888888731111 1111112222 2345566677777776554333333 666654
No 368
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.37 E-value=0.068 Score=45.16 Aligned_cols=268 Identities=10% Similarity=0.068 Sum_probs=119.9
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCC-CCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCC
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHP-YPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGD 108 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~ 108 (337)
|+.|+.++. .+|.-.+|.++..+.+..+ +.... .......++|+.+ .++..-.+ .|+-.|+.+
T Consensus 47 G~kllF~s~---~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--------~~~Yv~~~~~l~~vdL~T 111 (386)
T PF14583_consen 47 GRKLLFASD---FDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--------ALYYVKNGRSLRRVDLDT 111 (386)
T ss_dssp S-EEEEEE----TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--------EEEEEETTTEEEEEETTT
T ss_pred CCEEEEEec---cCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--------eEEEEECCCeEEEEECCc
Confidence 666666553 3777777778877777665 12322 2344567778887 34445454 899999999
Q ss_pred CCccceeeecCCCCCcccCCeeEEEeecC-CCCeEEEee----------------------CCCcEEEEeCCCccchhhh
Q 038533 109 SSIEPVAVLNNSKSSEFCAPLTSFDWNEI-EPKRIGTCS----------------------IDTTCTIWDIEKGVVETQL 165 (337)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~~~~----------------------~dg~i~v~d~~~~~~~~~~ 165 (337)
.+.+.+..+.. .-+-...|... ++..++-.- -...|.-.|+.+|+....+
T Consensus 112 ~e~~~vy~~p~-------~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~ 184 (386)
T PF14583_consen 112 LEERVVYEVPD-------DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVF 184 (386)
T ss_dssp --EEEEEE--T-------TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEE
T ss_pred CcEEEEEECCc-------ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEE
Confidence 85444444443 34444556432 344433221 1123444455555532222
Q ss_pred hccCCceeEEEeC--CCcEEEEEcC---CCe-EEEEECCCCCC-ceeeecCCCCCCCceEEEeecCCCcEEEEEEe-cCC
Q 038533 166 IAHDKEVYDICWG--EARVFASVSA---DGS-VRIFDLRDKEH-STIIYESPQPDTPLLRLAWNKQDLRYMATILM-DSN 237 (337)
Q Consensus 166 ~~~~~~v~~~~~~--~~~~l~~~~~---dg~-i~iwd~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~ 237 (337)
.....+..+.|+ ++.+++.|-+ +.. -++|-+++... ...+... .....+..=-|.| +|..+.--+. .+.
T Consensus 185 -~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~-DG~~i~y~~~~~~~ 261 (386)
T PF14583_consen 185 -EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVP-DGSTIWYDSYTPGG 261 (386)
T ss_dssp -EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-T-TSS-EEEEEEETTT
T ss_pred -ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccC-CCCEEEEEeecCCC
Confidence 244566777888 4667777654 221 25565543322 2222222 1233445556888 7776554332 222
Q ss_pred ---EEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCC----------------cEEEEeCCCCCCCCCCC
Q 038533 238 ---KVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDS----------------QAFIWELPLPPVAGPNG 298 (337)
Q Consensus 238 ---~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----------------~i~iw~~~~~~~~~~~~ 298 (337)
.|.-+|+.+... ..+. ......-+--+++|+ +++-=+.|. -|+++++..+.
T Consensus 262 ~~~~i~~~d~~t~~~--~~~~-~~p~~~H~~ss~Dg~-L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~------ 331 (386)
T PF14583_consen 262 QDFWIAGYDPDTGER--RRLM-EMPWCSHFMSSPDGK-LFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR------ 331 (386)
T ss_dssp --EEEEEE-TTT--E--EEEE-EE-SEEEEEE-TTSS-EEEEEE-------------------EEEEEETTTTE------
T ss_pred CceEEEeeCCCCCCc--eEEE-eCCceeeeEEcCCCC-EEEecCCCCCccccccccceecCCcEEEEeccccCc------
Confidence 266677776332 1221 112334556678887 554433332 35556665211
Q ss_pred CCceeeeeCC----------C-ceeEEEEccCCCceEEEE-cCCcEEEE
Q 038533 299 IDPMSMYSAG----------S-EINQLQWSPAQPDWLAIA-FSNKMQLL 335 (337)
Q Consensus 299 ~~~~~~~~~~----------~-~v~~~~~~~~~~~l~~~~-~d~~i~iw 335 (337)
...+..|. . .=....|+||+++++-.| ..|...||
T Consensus 332 --~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 332 --FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp --EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred --eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 11222221 1 125679999999888655 56766655
No 369
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.36 E-value=0.051 Score=43.39 Aligned_cols=185 Identities=15% Similarity=0.110 Sum_probs=106.6
Q ss_pred CCCeEEEecCCCCcccCcCCccEEEEeC--C--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee
Q 038533 71 YPPTKLMFDPNSSSRKSSSNRHLLASSG--D--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS 146 (337)
Q Consensus 71 ~~i~~i~~~~~~~~~~~~~~~~~l~~~~--~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 146 (337)
.-...+.|..++. ++-+.+ + .|+.+|+.+++......+... ----.++.. +..+..-.-
T Consensus 45 aFTQGL~~~~~g~---------LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~------~FgEGit~~--~d~l~qLTW 107 (264)
T PF05096_consen 45 AFTQGLEFLDDGT---------LYESTGLYGQSSLRKVDLETGKVLQSVPLPPR------YFGEGITIL--GDKLYQLTW 107 (264)
T ss_dssp -EEEEEEEEETTE---------EEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--------EEEEEEE--TTEEEEEES
T ss_pred ccCccEEecCCCE---------EEEeCCCCCcEEEEEEECCCCcEEEEEECCcc------ccceeEEEE--CCEEEEEEe
Confidence 3345788877776 777766 3 999999999964444444432 112234443 456666667
Q ss_pred CCCcEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecC--CCCCCCceEEEeecC
Q 038533 147 IDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYES--PQPDTPLLRLAWNKQ 224 (337)
Q Consensus 147 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~i~~~~~~~~ 224 (337)
.++...+||..+-+.+.++. ..+.=..++. +++.|+.......|.++|..+.+....+.-. ...-..++-+.|-
T Consensus 108 k~~~~f~yd~~tl~~~~~~~-y~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-- 183 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFP-YPGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-- 183 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE--SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--
T ss_pred cCCeEEEEccccceEEEEEe-cCCcceEEEc-CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--
Confidence 88999999999888777765 3455677774 4566666666788999998877654433221 0112345556664
Q ss_pred CCcEEEEEEecCCEEEEEECCCCCCCeEEee---------------cccceeeEEEeCCCCCCeEEEEc
Q 038533 225 DLRYMATILMDSNKVVILDIRSPTLPVAELE---------------RHRACVNAIAWAPQSRRHICSVG 278 (337)
Q Consensus 225 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~l~~~~ 278 (337)
+|...|=.=.... |...|..+ +.....+. ....-.+.|++.|....+++||-
T Consensus 184 ~G~IyANVW~td~-I~~Idp~t-G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 184 NGKIYANVWQTDR-IVRIDPET-GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TTEEEEEETTSSE-EEEEETTT--BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred cCEEEEEeCCCCe-EEEEeCCC-CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 4444433333333 66667666 33333221 01245789999998885777764
No 370
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.31 E-value=0.021 Score=51.93 Aligned_cols=175 Identities=10% Similarity=0.103 Sum_probs=92.2
Q ss_pred CCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEc------CCC--eEEEEECCCCCCceeeecCCCCCCCceE
Q 038533 148 DTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVS------ADG--SVRIFDLRDKEHSTIIYESPQPDTPLLR 218 (337)
Q Consensus 148 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~i~~ 218 (337)
+|.+.-.+-..-.++.-..+....+.+.+++ +++.++... .|. .|.+++.... ...+... .....
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~--~~~lt~g----~~~t~ 401 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV--AVQVLEG----HSLTR 401 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc--ceeeecC----CCCCC
Confidence 6666655432222332222333457788888 777766554 233 4555565322 2333222 24788
Q ss_pred EEeecCCCcEEEEEEecCC-----------EEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEe
Q 038533 219 LAWNKQDLRYMATILMDSN-----------KVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWE 287 (337)
Q Consensus 219 ~~~~~~~~~~l~~~~~d~~-----------~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~ 287 (337)
-.|+| ++..+++...... ++.+.++.. +.... .....|..+.|+|||. .++... +|+|.+=-
T Consensus 402 PsWsp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~-ge~~~---~~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~ 474 (591)
T PRK13616 402 PSWSL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDA-SAVAS---RVPGPISELQLSRDGV-RAAMII-GGKVYLAV 474 (591)
T ss_pred ceECC-CCCceEEEecCcceEEEeccCCCceEEEEeccC-chhhh---ccCCCcCeEEECCCCC-EEEEEE-CCEEEEEE
Confidence 89999 8777766643212 133334432 21111 2345799999999999 555544 57777743
Q ss_pred CCCCCCCCCCCCCceee-eeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 288 LPLPPVAGPNGIDPMSM-YSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 288 ~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
+.........-..+..+ ..-...+.++.|.+++. |+.+..++.-.+|.
T Consensus 475 Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~ 523 (591)
T PRK13616 475 VEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWY 523 (591)
T ss_pred EEeCCCCceeecccEEeecccCCccccceEecCCE-EEEEecCCCCceEE
Confidence 33111111000112222 22344468899999997 55555444444554
No 371
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.097 Score=45.23 Aligned_cols=189 Identities=14% Similarity=0.102 Sum_probs=116.4
Q ss_pred eEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcC---CCeEEEEECCCCCCcee
Q 038533 130 TSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSA---DGSVRIFDLRDKEHSTI 205 (337)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~---dg~i~iwd~~~~~~~~~ 205 (337)
..++.++...+.++....++.|.+.|..+.+......... ....++++ +++.+..+.. ++++.+.|..+.+....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 4677777333466666667899999987776655544222 56778888 5655555544 68899999888876666
Q ss_pred eecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeE-----EeecccceeeEEEeCCCCCCeEEEEcCC
Q 038533 206 IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVA-----ELERHRACVNAIAWAPQSRRHICSVGDD 280 (337)
Q Consensus 206 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~d 280 (337)
.... ..+ ..++++| ++..+++...+...|.+.|.... ...+ .... ......+.+.|++....++-..+
T Consensus 156 ~~vG---~~P-~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~-~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~ 228 (381)
T COG3391 156 IPVG---NTP-TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGN-SVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVANDGS 228 (381)
T ss_pred EecC---CCc-ceEEECC-CCCeEEEEecCCCeEEEEeCCCc-ceecccccccccc-CCCCceEEECCCCCEEEEEeccC
Confidence 4333 234 8899999 88877777655555999997652 2221 1111 22446789999998333333333
Q ss_pred --CcEEEEeCCCCCCCCCCCCCceee-eeCCC-ceeEEEEccCCCceEEEE-cCCcEEE
Q 038533 281 --SQAFIWELPLPPVAGPNGIDPMSM-YSAGS-EINQLQWSPAQPDWLAIA-FSNKMQL 334 (337)
Q Consensus 281 --g~i~iw~~~~~~~~~~~~~~~~~~-~~~~~-~v~~~~~~~~~~~l~~~~-~d~~i~i 334 (337)
+.+...|..... .... ..-.. ....+..+|+|..+.... ..+.+.+
T Consensus 229 ~~~~v~~id~~~~~--------v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 229 GSNNVLKIDTATGN--------VTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred CCceEEEEeCCCce--------EEEeccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence 578888877211 1111 01111 345678888887766653 2345544
No 372
>PHA02713 hypothetical protein; Provisional
Probab=97.29 E-value=0.034 Score=50.55 Aligned_cols=141 Identities=7% Similarity=0.043 Sum_probs=78.9
Q ss_pred EEEEeC-C------eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCC----------------
Q 038533 93 LLASSG-D------FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT---------------- 149 (337)
Q Consensus 93 ~l~~~~-~------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---------------- 149 (337)
+.+.|| + .+..||..+++......+.... .....+.. ++.+.+.|+.++
T Consensus 354 IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r-----~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 354 IYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL-----SSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred EEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc-----ccccEEEE---CCEEEEEeCCCccccccccccccccccc
Confidence 666665 2 5889999887655444443322 11222222 678888887653
Q ss_pred -------cEEEEeCCCcc--chhhhhccCCceeEEEeCCCcEEEEEcCC------CeEEEEECCC-CCCceeeecCCCCC
Q 038533 150 -------TCTIWDIEKGV--VETQLIAHDKEVYDICWGEARVFASVSAD------GSVRIFDLRD-KEHSTIIYESPQPD 213 (337)
Q Consensus 150 -------~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~ 213 (337)
.+..||.++.+ .+..+...... .+++..++++.+.|+.+ ..+..||..+ .+-... ...+...
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~-~~m~~~r 503 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI-TTTESRL 503 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCccccc-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc-cccCccc
Confidence 47788887764 22222211111 12333367777888764 2467899987 443222 1221222
Q ss_pred CCceEEEeecCCCcEEEEEEecC--CEEEEEECCCC
Q 038533 214 TPLLRLAWNKQDLRYMATILMDS--NKVVILDIRSP 247 (337)
Q Consensus 214 ~~i~~~~~~~~~~~~l~~~~~d~--~~i~i~d~~~~ 247 (337)
.....+.+ ++.+.++|+.++ . +..||..+.
T Consensus 504 ~~~~~~~~---~~~iyv~Gg~~~~~~-~e~yd~~~~ 535 (557)
T PHA02713 504 SALHTILH---DNTIMMLHCYESYML-QDTFNVYTY 535 (557)
T ss_pred ccceeEEE---CCEEEEEeeecceee-hhhcCcccc
Confidence 23333333 788888998887 4 777887763
No 373
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.22 E-value=0.088 Score=43.21 Aligned_cols=214 Identities=15% Similarity=0.183 Sum_probs=115.3
Q ss_pred EEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhh-------
Q 038533 93 LLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQ------- 164 (337)
Q Consensus 93 ~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~------- 164 (337)
.|+.|.+ .+.+++..... ......+. ..|..+...+ +-+.+++-+ |+.+.++++..-.....
T Consensus 9 ~L~vGt~~Gl~~~~~~~~~-~~~~i~~~-------~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 9 RLLVGTEDGLYVYDLSDPS-KPTRILKL-------SSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred EEEEEECCCEEEEEecCCc-cceeEeec-------ceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 6666665 88899883321 33333333 4599999988 666666554 59999999876543321
Q ss_pred -------hhccCCceeEEE-eC--CCcEEEEEcCCCeEEEEECCCCCCc--eeeecCCCCCCCceEEEeecCCCcEEEEE
Q 038533 165 -------LIAHDKEVYDIC-WG--EARVFASVSADGSVRIFDLRDKEHS--TIIYESPQPDTPLLRLAWNKQDLRYMATI 232 (337)
Q Consensus 165 -------~~~~~~~v~~~~-~~--~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~~~ 232 (337)
.......+...+ -. .+...+.+.....|.+|........ ....+. .-...+..++|. ++.++.+
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~~~~i~~~---~~~i~v~ 154 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDPPSSIAFL---GNKICVG 154 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE-EcCCCcEEEEEe---CCEEEEE
Confidence 011223455555 11 3444444444568999888764211 122211 234788999996 5677776
Q ss_pred EecCCEEEEEECCCCCCCeEEee--c----------ccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCC
Q 038533 233 LMDSNKVVILDIRSPTLPVAELE--R----------HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGID 300 (337)
Q Consensus 233 ~~d~~~i~i~d~~~~~~~~~~~~--~----------~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 300 (337)
..++ ..+.|+.+ +.+...+. . ...++..+... +++ +|++. |..-.+.|.. +. . ..
T Consensus 155 ~~~~--f~~idl~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e-~Ll~~--~~~g~fv~~~-G~-~--~r-- 221 (275)
T PF00780_consen 155 TSKG--FYLIDLNT-GSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNE-FLLCY--DNIGVFVNKN-GE-P--SR-- 221 (275)
T ss_pred eCCc--eEEEecCC-CCceEEeCccCCcchhhhcccCCCceEEEEeC-Cce-EEEEe--cceEEEEcCC-CC-c--Cc--
Confidence 6554 88999986 33222221 1 11233333333 345 56543 3333344444 11 1 01
Q ss_pred ceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 301 PMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 301 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
.....-...+.++++. .+++++... +.|.||++
T Consensus 222 -~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~ 254 (275)
T PF00780_consen 222 -KSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSL 254 (275)
T ss_pred -ccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEEC
Confidence 0111123356667764 457777666 44888875
No 374
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.21 E-value=0.0016 Score=36.83 Aligned_cols=32 Identities=9% Similarity=0.216 Sum_probs=29.1
Q ss_pred CCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCcc
Q 038533 127 APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGV 160 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~ 160 (337)
..|.+++|+| ..+++|.++.+|.|.++.+ +++
T Consensus 12 ~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCc
Confidence 6799999999 9999999999999999998 444
No 375
>PHA02713 hypothetical protein; Provisional
Probab=97.20 E-value=0.062 Score=48.88 Aligned_cols=181 Identities=5% Similarity=-0.006 Sum_probs=95.1
Q ss_pred EEEEeC-C-------eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCC-----cEEEEeCCCc
Q 038533 93 LLASSG-D-------FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT-----TCTIWDIEKG 159 (337)
Q Consensus 93 ~l~~~~-~-------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~ 159 (337)
+++.|| + .+..||..++.......+.... .....+.. ++.+.+.|+.++ .+..||..+.
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R-----~~~~~~~~---~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNR-----CRFSLAVI---DDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchh-----hceeEEEE---CCEEEEECCcCCCCCCceEEEEECCCC
Confidence 666665 1 4778888777543333333211 12222222 678888888764 4788998765
Q ss_pred c--chhhhhccCCceeEEEeCCCcEEEEEcCCC-----------------------eEEEEECCCCCCceeeecCCCCCC
Q 038533 160 V--VETQLIAHDKEVYDICWGEARVFASVSADG-----------------------SVRIFDLRDKEHSTIIYESPQPDT 214 (337)
Q Consensus 160 ~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg-----------------------~i~iwd~~~~~~~~~~~~~~~~~~ 214 (337)
+ .+..+....... +++..++.+.+.|+.++ .+..||.++.+-.... ..+....
T Consensus 378 ~W~~~~~mp~~r~~~-~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~~r~ 455 (557)
T PHA02713 378 KWKMLPDMPIALSSY-GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLP-NFWTGTI 455 (557)
T ss_pred eEEECCCCCcccccc-cEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecC-CCCcccc
Confidence 4 222222111111 22222677888887653 4777888776532211 1101111
Q ss_pred CceEEEeecCCCcEEEEEEecC-----CEEEEEECCC-CC-CCeEEeecccceeeEEEeCCCCCCeEEEEcCCC--cEEE
Q 038533 215 PLLRLAWNKQDLRYMATILMDS-----NKVVILDIRS-PT-LPVAELERHRACVNAIAWAPQSRRHICSVGDDS--QAFI 285 (337)
Q Consensus 215 ~i~~~~~~~~~~~~l~~~~~d~-----~~i~i~d~~~-~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~i 285 (337)
....+.+ ++.+.+.|+.++ ..+..||..+ .. ..+..+.........+.+ ++. +.++|+.|| .+..
T Consensus 456 ~~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~-iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 456 RPGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNT-IMMLHCYESYMLQDT 529 (557)
T ss_pred cCcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCE-EEEEeeecceeehhh
Confidence 1122222 667777776542 1267899886 22 223333333333333333 455 889999888 6677
Q ss_pred EeCC
Q 038533 286 WELP 289 (337)
Q Consensus 286 w~~~ 289 (337)
||..
T Consensus 530 yd~~ 533 (557)
T PHA02713 530 FNVY 533 (557)
T ss_pred cCcc
Confidence 7776
No 376
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.12 Score=44.61 Aligned_cols=197 Identities=12% Similarity=0.127 Sum_probs=124.3
Q ss_pred CCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC--
Q 038533 72 PPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI-- 147 (337)
Q Consensus 72 ~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-- 147 (337)
.-..++.++.+. ...+...+ .|.+.|..+.. ......-. .....+++++ +++.+.++..
T Consensus 75 ~p~~i~v~~~~~--------~vyv~~~~~~~v~vid~~~~~--~~~~~~vG------~~P~~~~~~~-~~~~vYV~n~~~ 137 (381)
T COG3391 75 YPAGVAVNPAGN--------KVYVTTGDSNTVSVIDTATNT--VLGSIPVG------LGPVGLAVDP-DGKYVYVANAGN 137 (381)
T ss_pred cccceeeCCCCC--------eEEEecCCCCeEEEEcCcccc--eeeEeeec------cCCceEEECC-CCCEEEEEeccc
Confidence 345667777776 45555543 99999977663 33333221 2455789998 7766655554
Q ss_pred -CCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEE-cCCCeEEEEECCCCCCce-eeecCCCCCCCceEEEeec
Q 038533 148 -DTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASV-SADGSVRIFDLRDKEHST-IIYESPQPDTPLLRLAWNK 223 (337)
Q Consensus 148 -dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~-~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~i~~~~~~~ 223 (337)
++.+.+.|..+++..........+ ..++++ +++.++.. ..++.|.+.|........ ...........-..+.++|
T Consensus 138 ~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~ 216 (381)
T COG3391 138 GNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP 216 (381)
T ss_pred CCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC
Confidence 689999999888877765433334 888998 67755544 478999999977665332 1000011123446788888
Q ss_pred CCCcEEEEEEecC--CEEEEEECCCCCCCeEE-eecccceeeEEEeCCCCCCeEEEE-cCCCcEEEEeCC
Q 038533 224 QDLRYMATILMDS--NKVVILDIRSPTLPVAE-LERHRACVNAIAWAPQSRRHICSV-GDDSQAFIWELP 289 (337)
Q Consensus 224 ~~~~~l~~~~~d~--~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~iw~~~ 289 (337)
++.++.+..... ..+...|..+ ...... ...-......+..+|+|. .+.+. +..+.+.+-|..
T Consensus 217 -~g~~~yV~~~~~~~~~v~~id~~~-~~v~~~~~~~~~~~~~~v~~~p~g~-~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 217 -DGNRVYVANDGSGSNNVLKIDTAT-GNVTATDLPVGSGAPRGVAVDPAGK-AAYVANSQGGTVSVIDGA 283 (381)
T ss_pred -CCCEEEEEeccCCCceEEEEeCCC-ceEEEeccccccCCCCceeECCCCC-EEEEEecCCCeEEEEeCC
Confidence 888766655554 2388888887 322222 111111456789999999 66665 445788888887
No 377
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.20 E-value=0.095 Score=43.24 Aligned_cols=233 Identities=12% Similarity=0.124 Sum_probs=102.7
Q ss_pred ceeEEEEe-cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCCeE
Q 038533 23 PLYAMAVC-GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGDFL 101 (337)
Q Consensus 23 ~v~~~~~s-~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~~v 101 (337)
..++++|. ...+++|. .+.| +............. +...-+.....+....++. .++.+.. =
T Consensus 63 ~l~~I~f~~~~g~ivG~-----~g~l--l~T~DgG~tW~~v~-l~~~lpgs~~~i~~l~~~~---------~~l~~~~-G 124 (302)
T PF14870_consen 63 HLNSISFDGNEGWIVGE-----PGLL--LHTTDGGKTWERVP-LSSKLPGSPFGITALGDGS---------AELAGDR-G 124 (302)
T ss_dssp EEEEEEEETTEEEEEEE-----TTEE--EEESSTTSS-EE-----TT-SS-EEEEEEEETTE---------EEEEETT--
T ss_pred eEEEEEecCCceEEEcC-----CceE--EEecCCCCCcEEee-cCCCCCCCeeEEEEcCCCc---------EEEEcCC-C
Confidence 46778888 55555554 5543 22444444444311 1112233344454444444 4444332 2
Q ss_pred EEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeCCCc
Q 038533 102 RLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEAR 181 (337)
Q Consensus 102 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (337)
.||...++-..=........ +.+..+.-++ ++.+++++.......-||.-...-...-......|.++.|.++.
T Consensus 125 ~iy~T~DgG~tW~~~~~~~~-----gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~ 198 (302)
T PF14870_consen 125 AIYRTTDGGKTWQAVVSETS-----GSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDG 198 (302)
T ss_dssp -EEEESSTTSSEEEEE-S---------EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS
T ss_pred cEEEeCCCCCCeeEcccCCc-----ceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCC
Confidence 34444433212222233333 6788888887 99988888765556677743221111112245789999999434
Q ss_pred EEEEEcCCCeEEEEECCC-CCC-ceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEee---c
Q 038533 182 VFASVSADGSVRIFDLRD-KEH-STIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELE---R 256 (337)
Q Consensus 182 ~l~~~~~dg~i~iwd~~~-~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~---~ 256 (337)
.|......|.|++=+... .+. ...+.......-.+..++|.+ ++...++ +..+. + +..... ++.-+..+ .
T Consensus 199 ~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~~wa~-gg~G~-l-~~S~Dg-GktW~~~~~~~~ 273 (302)
T PF14870_consen 199 NLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNEIWAV-GGSGT-L-LVSTDG-GKTWQKDRVGEN 273 (302)
T ss_dssp -EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-EEEE-ESTT--E-EEESST-TSS-EE-GGGTT
T ss_pred CEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCCEEEE-eCCcc-E-EEeCCC-CccceECccccC
Confidence 444455889998877221 110 011111111234578999987 5555554 44554 2 333333 43333332 1
Q ss_pred ccceeeEEEeCCCCCCeEEEEcCCCcEEEE
Q 038533 257 HRACVNAIAWAPQSRRHICSVGDDSQAFIW 286 (337)
Q Consensus 257 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 286 (337)
-...+..+.|.+..+ -+..+.+|.|.-|
T Consensus 274 ~~~n~~~i~f~~~~~--gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 274 VPSNLYRIVFVNPDK--GFVLGQDGVLLRY 301 (302)
T ss_dssp SSS---EEEEEETTE--EEEE-STTEEEEE
T ss_pred CCCceEEEEEcCCCc--eEEECCCcEEEEe
Confidence 234578888876654 4444557776544
No 378
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.12 E-value=0.24 Score=46.48 Aligned_cols=225 Identities=9% Similarity=0.045 Sum_probs=126.7
Q ss_pred CccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC-----------C---CcEEEE
Q 038533 90 NRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI-----------D---TTCTIW 154 (337)
Q Consensus 90 ~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-----------d---g~i~v~ 154 (337)
.+..|+++.+ .+++..++.-+....+++.-+ .....+++.+ ....+.+.+. . ..++++
T Consensus 683 ~~d~l~~~~~~~l~i~tid~iqkl~irtvpl~------~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vl 755 (1096)
T KOG1897|consen 683 YPDSLASANGGALTIGTIDEIQKLHIRTVPLG------ESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVL 755 (1096)
T ss_pred CCceEEEecCCceEEEEecchhhcceeeecCC------CChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEe
Confidence 3445555554 555555544322233333333 3455566654 3333333321 1 135666
Q ss_pred eCCCccchhhhh--cc--CCceeEEEeC-C-CcEEEEEcC----------CCeEEEEECCCCCCceeeecCCCCCCCceE
Q 038533 155 DIEKGVVETQLI--AH--DKEVYDICWG-E-ARVFASVSA----------DGSVRIFDLRDKEHSTIIYESPQPDTPLLR 218 (337)
Q Consensus 155 d~~~~~~~~~~~--~~--~~~v~~~~~~-~-~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~ 218 (337)
|-++-+.+...+ .. ...+.++.|. + +.++++|.. .|.|.+|.+...+......+. .-++.+.+
T Consensus 756 D~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~-~v~Gav~a 834 (1096)
T KOG1897|consen 756 DQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET-VVKGAVYA 834 (1096)
T ss_pred cCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee-eeccceee
Confidence 666555333221 11 1234555577 3 677777753 578888888874444443332 22355555
Q ss_pred EEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCC
Q 038533 219 LAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNG 298 (337)
Q Consensus 219 ~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~ 298 (337)
+.- .+++++|..+ .. |++|+..+ ++.++.-..+..++..+...-.+. .++.|..-+.+.+-..+..+ +
T Consensus 835 L~~--fngkllA~In--~~-vrLye~t~-~~eLr~e~~~~~~~~aL~l~v~gd-eI~VgDlm~Sitll~y~~~e-----g 902 (1096)
T KOG1897|consen 835 LVE--FNGKLLAGIN--QS-VRLYEWTT-ERELRIECNISNPIIALDLQVKGD-EIAVGDLMRSITLLQYKGDE-----G 902 (1096)
T ss_pred hhh--hCCeEEEecC--cE-EEEEEccc-cceehhhhcccCCeEEEEEEecCc-EEEEeeccceEEEEEEeccC-----C
Confidence 543 2777777643 33 99999987 445666666778888888888888 99999988888887766112 1
Q ss_pred CCce-eeeeCCCceeEEEEccCCCceEEEEcCCcEEEE
Q 038533 299 IDPM-SMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLL 335 (337)
Q Consensus 299 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 335 (337)
.... .-.-+..+++++.+-.+.. ++.+-.+|.+.+-
T Consensus 903 ~f~evArD~~p~Wmtaveil~~d~-ylgae~~gNlf~v 939 (1096)
T KOG1897|consen 903 NFEEVARDYNPNWMTAVEILDDDT-YLGAENSGNLFTV 939 (1096)
T ss_pred ceEEeehhhCccceeeEEEecCce-EEeecccccEEEE
Confidence 1111 1223566778888776653 3444445555543
No 379
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.1 Score=42.01 Aligned_cols=152 Identities=13% Similarity=0.112 Sum_probs=100.0
Q ss_pred CCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhc--cCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCce
Q 038533 127 APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIA--HDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHST 204 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 204 (337)
+-+..+.++ +++...+..+.-+++.|+.+...-..+.. ..+.-.++.. .|++...+..|.-+.+.|+.+...+.
T Consensus 87 ~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-cCCEEEEeeccCcEEEEECCCCCCce
Confidence 556777875 47777778888899999987653322221 1233333333 58898888877778899999888666
Q ss_pred eeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccc-eeeEEEeCCCCCCeEEEEcCCCcE
Q 038533 205 IIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRA-CVNAIAWAPQSRRHICSVGDDSQA 283 (337)
Q Consensus 205 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i 283 (337)
..-........-..++. .|++-..+..|++ +.+.|+..+..|...-....+ .+.++..+++.. +++... --+
T Consensus 163 lagrya~~~~d~~~v~I---SGn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~vvy~--egv 235 (370)
T COG5276 163 LAGRYALPGGDTHDVAI---SGNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YLVVYD--EGV 235 (370)
T ss_pred eeeeeccCCCCceeEEE---ecCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EEEEcc--cce
Confidence 55443333344466776 5788888889999 999999998777654333333 677888787754 444443 234
Q ss_pred EEEeCC
Q 038533 284 FIWELP 289 (337)
Q Consensus 284 ~iw~~~ 289 (337)
.+-|..
T Consensus 236 livd~s 241 (370)
T COG5276 236 LIVDVS 241 (370)
T ss_pred EEEecC
Confidence 455555
No 380
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.09 E-value=0.26 Score=46.25 Aligned_cols=270 Identities=12% Similarity=0.155 Sum_probs=153.1
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC-----------
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD----------- 99 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~----------- 99 (337)
+..||.+. .+.+++..++.-.+.... ...-......+++.+... ++++.++
T Consensus 684 ~d~l~~~~-----~~~l~i~tid~iqkl~ir----tvpl~~~prrI~~q~~sl---------~~~v~s~r~e~~~~~~~e 745 (1096)
T KOG1897|consen 684 PDSLASAN-----GGALTIGTIDEIQKLHIR----TVPLGESPRRICYQESSL---------TFGVLSNRIESSAEYYGE 745 (1096)
T ss_pred CceEEEec-----CCceEEEEecchhhccee----eecCCCChhheEecccce---------EEEEEecccccchhhcCC
Confidence 56666666 677888777654333222 123445567777777443 4443321
Q ss_pred -----eEEEEecCCCCccceeeecCCCCCcc--cCCeeEEEeecCCCCeEEEee----------CCCcEEEEeCCCccch
Q 038533 100 -----FLRLWDVGDSSIEPVAVLNNSKSSEF--CAPLTSFDWNEIEPKRIGTCS----------IDTTCTIWDIEKGVVE 162 (337)
Q Consensus 100 -----~v~vw~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~l~~~~----------~dg~i~v~d~~~~~~~ 162 (337)
.++++|-++-+ .+..|+.... .-.|.++.|....+.++++|. ..|.|.++.+..++.+
T Consensus 746 e~~~s~l~vlD~nTf~-----vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L 820 (1096)
T KOG1897|consen 746 EYEVSFLRVLDQNTFE-----VLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL 820 (1096)
T ss_pred cceEEEEEEecCCcee-----EEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce
Confidence 35566655542 2222221111 134555668762367777775 4578888888774444
Q ss_pred hhhhc--cCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEE
Q 038533 163 TQLIA--HDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVV 240 (337)
Q Consensus 163 ~~~~~--~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~ 240 (337)
..... -.+.+.++..-+++++|.- +..|++|+..+.+..+. ...+..++..+...- .++.+++|..-++ +.
T Consensus 821 ~~v~e~~v~Gav~aL~~fngkllA~I--n~~vrLye~t~~~eLr~---e~~~~~~~~aL~l~v-~gdeI~VgDlm~S-it 893 (1096)
T KOG1897|consen 821 ELVAETVVKGAVYALVEFNGKLLAGI--NQSVRLYEWTTERELRI---ECNISNPIIALDLQV-KGDEIAVGDLMRS-IT 893 (1096)
T ss_pred eeeeeeeeccceeehhhhCCeEEEec--CcEEEEEEccccceehh---hhcccCCeEEEEEEe-cCcEEEEeeccce-EE
Confidence 43322 2345555554467766654 46899999988753222 223456788888876 8999999988887 77
Q ss_pred EEECCCCCCCeEEe--ecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCC-CCCce------------eee
Q 038533 241 ILDIRSPTLPVAEL--ERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPN-GIDPM------------SMY 305 (337)
Q Consensus 241 i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~------------~~~ 305 (337)
+...+.....+..+ ..+..+.+++.+-.+. .++.+..+|.+.+-..+ +..... .+.+. ..+
T Consensus 894 ll~y~~~eg~f~evArD~~p~Wmtaveil~~d--~ylgae~~gNlf~v~~d--~~~~td~eR~~l~~~~~~hlGelvn~f 969 (1096)
T KOG1897|consen 894 LLQYKGDEGNFEEVARDYNPNWMTAVEILDDD--TYLGAENSGNLFTVRKD--SDATTDEERQILEEVGKFHLGELVNKF 969 (1096)
T ss_pred EEEEeccCCceEEeehhhCccceeeEEEecCc--eEEeecccccEEEEEec--CCCCchhhhhcccceeeEEeccceeee
Confidence 76665433222222 2355678888877665 46666678888877665 222111 11111 112
Q ss_pred eCCCceeE--EEEccCCCceEEEEcCCcEEE
Q 038533 306 SAGSEINQ--LQWSPAQPDWLAIAFSNKMQL 334 (337)
Q Consensus 306 ~~~~~v~~--~~~~~~~~~l~~~~~d~~i~i 334 (337)
.|..-|.+ -.-+|.++.++-+..+|.|-+
T Consensus 970 ~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~ 1000 (1096)
T KOG1897|consen 970 RHGSLVMQLGDSMIPLEPKVLFGTVNGSIGI 1000 (1096)
T ss_pred eecceEeeccccccCCCCcEEEEEccceEEE
Confidence 24444444 133455666777777777654
No 381
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.03 E-value=0.23 Score=44.58 Aligned_cols=154 Identities=12% Similarity=0.065 Sum_probs=81.2
Q ss_pred EEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCee-EEEeecCCCCeEEEee---------CCCcEEEEeCCCccc
Q 038533 93 LLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLT-SFDWNEIEPKRIGTCS---------IDTTCTIWDIEKGVV 161 (337)
Q Consensus 93 ~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~---------~dg~i~v~d~~~~~~ 161 (337)
+++...+ .|.-+|.+++ +.+..............+. ...+ .+..++.++ .+|.+..+|..+++.
T Consensus 113 V~v~~~~g~v~AlD~~TG--~~~W~~~~~~~~~~~~~i~ssP~v---~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 113 VFFGTFDGRLVALDAETG--KQVWKFGNNDQVPPGYTMTGAPTI---VKKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred EEEecCCCeEEEEECCCC--CEeeeecCCCCcCcceEecCCCEE---ECCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 5544445 9999999998 4444444321000000011 1112 124455554 367899999999987
Q ss_pred hhhhhccCC--------------------ce-eEEEeC-CCcEEEEEcCCC------------------eEEEEECCCCC
Q 038533 162 ETQLIAHDK--------------------EV-YDICWG-EARVFASVSADG------------------SVRIFDLRDKE 201 (337)
Q Consensus 162 ~~~~~~~~~--------------------~v-~~~~~~-~~~~l~~~~~dg------------------~i~iwd~~~~~ 201 (337)
+-.+..... .+ ...++. .+..++.++.++ .|.-+|..+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 665542111 01 122333 356777777665 78889999888
Q ss_pred CceeeecCCCCCC----CceEEEee---cCCCc---EEEEEEecCCEEEEEECCCCCCCeEEe
Q 038533 202 HSTIIYESPQPDT----PLLRLAWN---KQDLR---YMATILMDSNKVVILDIRSPTLPVAEL 254 (337)
Q Consensus 202 ~~~~~~~~~~~~~----~i~~~~~~---~~~~~---~l~~~~~d~~~i~i~d~~~~~~~~~~~ 254 (337)
..-..... .+.. ......+. ..++. .+++++.++. +..+|.++ ++++...
T Consensus 268 ~~W~~~~~-~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~-l~ald~~t-G~~~W~~ 327 (488)
T cd00216 268 VKWFYQTT-PHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGF-FYVLDRTT-GKLISAR 327 (488)
T ss_pred EEEEeeCC-CCCCcccccCCCCeEEeccccCCCeeEEEEEECCCce-EEEEECCC-CcEeeEe
Confidence 55443222 1110 00111111 01232 5677777887 99999998 5555443
No 382
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.02 E-value=0.16 Score=46.33 Aligned_cols=199 Identities=15% Similarity=0.151 Sum_probs=107.8
Q ss_pred ceeEEEEe-cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-
Q 038533 23 PLYAMAVC-GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D- 99 (337)
Q Consensus 23 ~v~~~~~s-~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~- 99 (337)
.-.+++.. +...++|+.+.+.+..-.+|-++...........+.. ...=.+++- -++. +.|.|| +
T Consensus 324 ~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~--~R~~~~v~~-l~g~---------iYavGG~dg 391 (571)
T KOG4441|consen 324 CRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT--KRSDFGVAV-LDGK---------LYAVGGFDG 391 (571)
T ss_pred ccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC--ccccceeEE-ECCE---------EEEEecccc
Confidence 34455555 7788888862111122234445555555544222211 111112222 2454 777776 2
Q ss_pred -----eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCC------cEEEEeCCCcc--chhhhh
Q 038533 100 -----FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT------TCTIWDIEKGV--VETQLI 166 (337)
Q Consensus 100 -----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg------~i~v~d~~~~~--~~~~~~ 166 (337)
++-.||..+.+...+..+.... ...-...+ ++.+.++|+.++ ++..||..+++ .+..+.
T Consensus 392 ~~~l~svE~YDp~~~~W~~va~m~~~r-----~~~gv~~~---~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~ 463 (571)
T KOG4441|consen 392 EKSLNSVECYDPVTNKWTPVAPMLTRR-----SGHGVAVL---GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN 463 (571)
T ss_pred ccccccEEEecCCCCcccccCCCCcce-----eeeEEEEE---CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc
Confidence 6899999988766655444322 22223333 788899988554 56788887765 222222
Q ss_pred ccCCceeEEEeCCCcEEEEEcCCCe-----EEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC----
Q 038533 167 AHDKEVYDICWGEARVFASVSADGS-----VRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN---- 237 (337)
Q Consensus 167 ~~~~~v~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~---- 237 (337)
.-.. -..++..++.+.+.|+.|+. +..||..+.+..... ........+..+.+ ++...++|+.++.
T Consensus 464 ~~R~-~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~-~m~~~rs~~g~~~~---~~~ly~vGG~~~~~~l~ 538 (571)
T KOG4441|consen 464 TRRS-GFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA-PMTSPRSAVGVVVL---GGKLYAVGGFDGNNNLN 538 (571)
T ss_pred cccc-cceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc-cCccccccccEEEE---CCEEEEEecccCccccc
Confidence 1111 12244447888888888763 778998887744332 11112223333333 7788888887774
Q ss_pred EEEEEECCC
Q 038533 238 KVVILDIRS 246 (337)
Q Consensus 238 ~i~i~d~~~ 246 (337)
.|..||..+
T Consensus 539 ~ve~ydp~~ 547 (571)
T KOG4441|consen 539 TVECYDPET 547 (571)
T ss_pred eeEEcCCCC
Confidence 366666654
No 383
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.00 E-value=0.26 Score=45.00 Aligned_cols=185 Identities=14% Similarity=0.201 Sum_probs=102.0
Q ss_pred CCeeEEEeecCCCCeEEEee------CCC--cEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCC--------
Q 038533 127 APLTSFDWNEIEPKRIGTCS------IDT--TCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSAD-------- 189 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~------~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-------- 189 (337)
..+...+.+| +++.++... .|+ .|.+++. .+.. ..+.. ......-.|+ +++.+++....
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEec
Confidence 4577889999 888777665 243 4555554 2222 22221 2237778898 56777766532
Q ss_pred ----CeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEE---EECCCCCC-Ce---EEee-cc
Q 038533 190 ----GSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI---LDIRSPTL-PV---AELE-RH 257 (337)
Q Consensus 190 ----g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i---~d~~~~~~-~~---~~~~-~~ 257 (337)
+.+.+.++..+.... .....|..+.|+| +|..++... ++. |++ -.... +. .+ ..+. .-
T Consensus 426 ~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSp-DG~RiA~i~-~g~-v~Va~Vvr~~~-G~~~l~~~~~l~~~l 495 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS------RVPGPISELQLSR-DGVRAAMII-GGK-VYLAVVEQTED-GQYALTNPREVGPGL 495 (591)
T ss_pred cCCCceEEEEeccCchhhh------ccCCCcCeEEECC-CCCEEEEEE-CCE-EEEEEEEeCCC-CceeecccEEeeccc
Confidence 233333443332211 1245799999999 999888766 354 777 33222 22 11 1122 22
Q ss_pred cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEE
Q 038533 258 RACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQ 333 (337)
Q Consensus 258 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 333 (337)
...+.++.|.+++. ++ ++..++.-.+|.+....... ..........++.+++-+++ .++.+..++.++
T Consensus 496 ~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~vDG~~~----~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 496 GDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNLDGSNS----DALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred CCccccceEecCCE-EE-EEecCCCCceEEEecCCccc----cccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 23468899999997 54 55555555667665222111 01011113566778887774 466666666554
No 384
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.98 E-value=0.0027 Score=35.87 Aligned_cols=31 Identities=19% Similarity=0.489 Sum_probs=28.4
Q ss_pred cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 258 RACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 258 ~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
...|..++|+|... +||.++.+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence 34689999999999 99999999999999986
No 385
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.94 E-value=0.035 Score=48.83 Aligned_cols=160 Identities=12% Similarity=0.177 Sum_probs=89.6
Q ss_pred CCceeEEEEe-cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC
Q 038533 21 PYPLYAMAVC-GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD 99 (337)
Q Consensus 21 ~~~v~~~~~s-~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~ 99 (337)
-.|+..++|. |+.++...- .+ .+++...-.....+.=+.|..+.|.|-+. ...+.+||.--.
T Consensus 19 iHPvhGlaWTDGkqVvLT~L--------~l-----~~gE~kfGds~viGqFEhV~GlsW~P~~~----~~~paLLAVQHk 81 (671)
T PF15390_consen 19 IHPVHGLAWTDGKQVVLTDL--------QL-----HNGEPKFGDSKVIGQFEHVHGLSWAPPCT----ADTPALLAVQHK 81 (671)
T ss_pred hccccceEecCCCEEEEEee--------ee-----eCCccccCCccEeeccceeeeeeecCccc----CCCCceEEEecc
Confidence 4688999999 655544331 11 11111110011134445689999999765 334568999887
Q ss_pred -eEEEEecCCCCc---cceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCc--cchhhhhccCCcee
Q 038533 100 -FLRLWDVGDSSI---EPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKG--VVETQLIAHDKEVY 173 (337)
Q Consensus 100 -~v~vw~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~--~~~~~~~~~~~~v~ 173 (337)
.|.||.+..... +.+.....+-.+.+.---..+.|+| ....|++-.....=.+++++.. +....++ ..+.|.
T Consensus 82 khVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~Ih 159 (671)
T PF15390_consen 82 KHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIH 159 (671)
T ss_pred ceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEE
Confidence 999999863211 1221111111111112234678999 7676666655444445555433 2333343 467899
Q ss_pred EEEeC-CCcEEEEEc-CCCeEEEEECCC
Q 038533 174 DICWG-EARVFASVS-ADGSVRIFDLRD 199 (337)
Q Consensus 174 ~~~~~-~~~~l~~~~-~dg~i~iwd~~~ 199 (337)
|.+|. +|+.|+++- ..=.-++||-..
T Consensus 160 CACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 160 CACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 99999 877766553 333456787543
No 386
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.0074 Score=56.35 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=71.2
Q ss_pred CCCeEEEeeCCCcEEEEeCCCc-cchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCC
Q 038533 138 EPKRIGTCSIDTTCTIWDIEKG-VVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTP 215 (337)
Q Consensus 138 ~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 215 (337)
.+..++.|+..|.+-..|+... .+...-....++|++++|+ ++..++.|-.+|.|.+||+..++..+.+.........
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4567899999999999988653 1222223456789999999 8999999999999999999998877777655444445
Q ss_pred ceEEEeecCCCcEEEEEEecCC
Q 038533 216 LLRLAWNKQDLRYMATILMDSN 237 (337)
Q Consensus 216 i~~~~~~~~~~~~l~~~~~d~~ 237 (337)
+..+.+.. .+..++++...|.
T Consensus 178 vi~v~~t~-~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 178 VIFVGRTS-QNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEEEeC-CCcEEEEccCCCc
Confidence 55555554 4445666555553
No 387
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.93 E-value=0.16 Score=41.11 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=84.2
Q ss_pred ceeEEEeC-CCcEEEEEc---CCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEE-CC
Q 038533 171 EVYDICWG-EARVFASVS---ADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILD-IR 245 (337)
Q Consensus 171 ~v~~~~~~-~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d-~~ 245 (337)
.+.+.+++ +++.++... ....+.++.. .......... ..+....|++ ++...++...+.. .+++. ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g----~~l~~PS~d~-~g~~W~v~~~~~~-~~~~~~~~ 96 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG----GSLTRPSWDP-DGWVWTVDDGSGG-VRVVRDSA 96 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC----CccccccccC-CCCEEEEEcCCCc-eEEEEecC
Confidence 67889999 777666655 3334555543 3333333222 4778889999 6666666565555 56653 22
Q ss_pred CCCCCeEEeecc--cceeeEEEeCCCCCCeEEEEc---CCCcEEEEeCCCCCCCCCC-CCCce-eeeeCCCceeEEEEcc
Q 038533 246 SPTLPVAELERH--RACVNAIAWAPQSRRHICSVG---DDSQAFIWELPLPPVAGPN-GIDPM-SMYSAGSEINQLQWSP 318 (337)
Q Consensus 246 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~---~dg~i~iw~~~~~~~~~~~-~~~~~-~~~~~~~~v~~~~~~~ 318 (337)
............ ...|..+.++|||. .++... .++.|.+=-+.......+. -..+. ........+.+++|.+
T Consensus 97 ~g~~~~~~v~~~~~~~~I~~l~vSpDG~-RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 97 SGTGEPVEVDWPGLRGRITALRVSPDGT-RVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred CCcceeEEecccccCCceEEEEECCCCc-EEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 222111122111 12899999999999 444443 3577777766522222110 01112 2223356899999999
Q ss_pred CCCceEEEEc
Q 038533 319 AQPDWLAIAF 328 (337)
Q Consensus 319 ~~~~l~~~~~ 328 (337)
++..++.+..
T Consensus 176 ~~~L~V~~~~ 185 (253)
T PF10647_consen 176 DSTLVVLGRS 185 (253)
T ss_pred CCEEEEEeCC
Confidence 9976665543
No 388
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.92 E-value=0.22 Score=45.39 Aligned_cols=229 Identities=14% Similarity=0.159 Sum_probs=120.8
Q ss_pred cceEEEeeeec--cCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-C-------e
Q 038533 31 GQRIAVGSFIE--DYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG-D-------F 100 (337)
Q Consensus 31 ~~~la~g~~~~--~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-------~ 100 (337)
+.++++|+... ..-..+..||...+ ....... ......-.+++...+ . +.++|| + +
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~--~w~~~a~--m~~~r~~~~~~~~~~-~---------lYv~GG~~~~~~~l~~ 350 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTN--EWSSLAP--MPSPRCRVGVAVLNG-K---------LYVVGGYDSGSDRLSS 350 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcC--cEeecCC--CCcccccccEEEECC-E---------EEEEccccCCCcccce
Confidence 67778888621 11245666554443 3332112 233344455555544 3 666654 2 6
Q ss_pred EEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCc-----EEEEeCCCccc--hhhhhccCCcee
Q 038533 101 LRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTT-----CTIWDIEKGVV--ETQLIAHDKEVY 173 (337)
Q Consensus 101 v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~-----i~v~d~~~~~~--~~~~~~~~~~v~ 173 (337)
+..||..+++......+.... ....... .++.+.|+|+.||. +-.||.++.+- +..+.. ...-.
T Consensus 351 ve~YD~~~~~W~~~a~M~~~R-----~~~~v~~---l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~ 421 (571)
T KOG4441|consen 351 VERYDPRTNQWTPVAPMNTKR-----SDFGVAV---LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGH 421 (571)
T ss_pred EEEecCCCCceeccCCccCcc-----ccceeEE---ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeee
Confidence 788888888655544444432 2222222 27899999999874 67788766542 222221 11112
Q ss_pred EEEeCCCcEEEEEcCCC------eEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC----EEEEEE
Q 038533 174 DICWGEARVFASVSADG------SVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN----KVVILD 243 (337)
Q Consensus 174 ~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~----~i~i~d 243 (337)
+++...+.+.+.|+.++ ++..||..+.......... ..... ..++.- ++.+.+.||.++. .|..||
T Consensus 422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~-~~R~~-~g~a~~--~~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN-TRRSG-FGVAVL--NGKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc-ccccc-ceEEEE--CCEEEEECCccCCCccceEEEEc
Confidence 22222688888888654 4678898887633222111 11112 223332 7888888887762 377888
Q ss_pred CCCCCC-CeEEeecccceeeEEEeCCCCCCeEEEEcCCCc-----EEEEeCC
Q 038533 244 IRSPTL-PVAELERHRACVNAIAWAPQSRRHICSVGDDSQ-----AFIWELP 289 (337)
Q Consensus 244 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~iw~~~ 289 (337)
.++..- .+..+......+....+ ++. +.+.|+.||. |..||..
T Consensus 498 p~~~~W~~v~~m~~~rs~~g~~~~--~~~-ly~vGG~~~~~~l~~ve~ydp~ 546 (571)
T KOG4441|consen 498 PETNQWTMVAPMTSPRSAVGVVVL--GGK-LYAVGGFDGNNNLNTVECYDPE 546 (571)
T ss_pred CCCCceeEcccCccccccccEEEE--CCE-EEEEecccCccccceeEEcCCC
Confidence 887331 11112222222222222 344 7888887763 5556555
No 389
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.81 E-value=0.29 Score=42.40 Aligned_cols=153 Identities=13% Similarity=0.138 Sum_probs=90.0
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCC
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDS 109 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~ 109 (337)
.+.|++|+. .|.++||+-........ ...++.....+|..++.-+-.. +.....||.-.. .+.||.+...
T Consensus 37 ~d~IivGS~----~G~LrIy~P~~~~~~~~-~lllE~~l~~PILqv~~G~F~s----~~~~~~LaVLhP~kl~vY~v~~~ 107 (418)
T PF14727_consen 37 SDKIIVGSY----SGILRIYDPSGNEFQPE-DLLLETQLKDPILQVECGKFVS----GSEDLQLAVLHPRKLSVYSVSLV 107 (418)
T ss_pred ccEEEEecc----ccEEEEEccCCCCCCCc-cEEEEEecCCcEEEEEeccccC----CCCcceEEEecCCEEEEEEEEec
Confidence 468999996 99999987643332211 1123456778898888643211 111247777665 8888888432
Q ss_pred C-------ccceeeecCCCCCcccCCeeEEEeecC---C-CCeEEEeeCCCcEEEEeCCCccchhhhh--ccCCceeEEE
Q 038533 110 S-------IEPVAVLNNSKSSEFCAPLTSFDWNEI---E-PKRIGTCSIDTTCTIWDIEKGVVETQLI--AHDKEVYDIC 176 (337)
Q Consensus 110 ~-------~~~~~~~~~~~~~~~~~~i~~~~~~~~---~-~~~l~~~~~dg~i~v~d~~~~~~~~~~~--~~~~~v~~~~ 176 (337)
. .-.+..+..|. +......+..-|. . ...+++-+.||.+.+++-+.....+.+. -..++ ++
T Consensus 108 ~g~~~~g~~~~L~~~yeh~---l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgP---l~ 181 (418)
T PF14727_consen 108 DGTVEHGNQYQLELIYEHS---LQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGP---LC 181 (418)
T ss_pred CCCcccCcEEEEEEEEEEe---cccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcC---eE
Confidence 1 11222222232 1123334444332 2 4689999999999999976543222222 12333 45
Q ss_pred eC-CCcEEEEEcCCCeEEEEECC
Q 038533 177 WG-EARVFASVSADGSVRIFDLR 198 (337)
Q Consensus 177 ~~-~~~~l~~~~~dg~i~iwd~~ 198 (337)
+. ..+.|++++.+..+..|...
T Consensus 182 Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 182 YCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred EeecCCEEEEecCceeEEEecHH
Confidence 55 46788999988899888753
No 390
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.2 Score=40.40 Aligned_cols=163 Identities=9% Similarity=0.128 Sum_probs=97.0
Q ss_pred CCCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee
Q 038533 68 DHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS 146 (337)
Q Consensus 68 ~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 146 (337)
+-...+.++.|+|+.+ .++++... .-.|+=...++......+.+- ...-.+.|.. ++++.++--
T Consensus 83 g~~~nvS~LTynp~~r--------tLFav~n~p~~iVElt~~GdlirtiPL~g~------~DpE~Ieyig-~n~fvi~dE 147 (316)
T COG3204 83 GETANVSSLTYNPDTR--------TLFAVTNKPAAIVELTKEGDLIRTIPLTGF------SDPETIEYIG-GNQFVIVDE 147 (316)
T ss_pred cccccccceeeCCCcc--------eEEEecCCCceEEEEecCCceEEEeccccc------CChhHeEEec-CCEEEEEeh
Confidence 4444599999999998 45555554 444444445532222233332 2344577765 667777767
Q ss_pred CCCcEEEEeCCCccchh----------hhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeee--cCCCC-
Q 038533 147 IDTTCTIWDIEKGVVET----------QLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIY--ESPQP- 212 (337)
Q Consensus 147 ~dg~i~v~d~~~~~~~~----------~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~- 212 (337)
.++.+.++.+..+..+. .....+.....++|+ .++.|+.+-+-.-+.||............ ..+..
T Consensus 148 R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~ 227 (316)
T COG3204 148 RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTAD 227 (316)
T ss_pred hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccc
Confidence 78888888776553211 111124567889999 56777777777778887766443111111 11000
Q ss_pred ----CCCceEEEeecCCCcEEEEEEecCCEEEEEECCC
Q 038533 213 ----DTPLLRLAWNKQDLRYMATILMDSNKVVILDIRS 246 (337)
Q Consensus 213 ----~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~ 246 (337)
-..+.++.|++..+.+|+.+.+++. +.-.|...
T Consensus 228 ~~~f~~DvSgl~~~~~~~~LLVLS~ESr~-l~Evd~~G 264 (316)
T COG3204 228 RDLFVLDVSGLEFNAITNSLLVLSDESRR-LLEVDLSG 264 (316)
T ss_pred cceEeeccccceecCCCCcEEEEecCCce-EEEEecCC
Confidence 1357788999866777777766666 77777663
No 391
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.011 Score=55.40 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=75.2
Q ss_pred CcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccc
Q 038533 180 ARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRA 259 (337)
Q Consensus 180 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~ 259 (337)
+..++.|+..|.+-..|++..-.. ........+++.+++|+. +|..++.|-.+|. |.+||+.. +.+++.+..|..
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~--~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~-V~v~D~~~-~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGP--LHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGH-VTVWDMHR-AKILKVITEHGA 173 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccch--hhcCCccCCcceeeEecC-CCceeccccCCCc-EEEEEccC-CcceeeeeecCC
Confidence 567889999999999998875322 222334568999999998 9999999999998 99999988 566777766655
Q ss_pred eeeE---EEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 260 CVNA---IAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 260 ~v~~---~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
+.+. +.+..++. .++++...|. +|.+.
T Consensus 174 p~t~vi~v~~t~~nS-~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNS-KLLTSDTGGS--FWKLV 203 (1206)
T ss_pred ccceEEEEEEeCCCc-EEEEccCCCc--eEEEE
Confidence 5444 34445555 7888877776 56654
No 392
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.68 E-value=0.13 Score=44.14 Aligned_cols=196 Identities=7% Similarity=0.021 Sum_probs=86.0
Q ss_pred CCCeEEEee-CCCcEEEEeCCCcc----chhhhhc-----cC--CceeEEEeC-CCcEEEEEcC------CCeEEEEECC
Q 038533 138 EPKRIGTCS-IDTTCTIWDIEKGV----VETQLIA-----HD--KEVYDICWG-EARVFASVSA------DGSVRIFDLR 198 (337)
Q Consensus 138 ~~~~l~~~~-~dg~i~v~d~~~~~----~~~~~~~-----~~--~~v~~~~~~-~~~~l~~~~~------dg~i~iwd~~ 198 (337)
+.++|+..+ ..+.|+|.|+.+.. ..+.+.. .. .....+..- +++.++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345555555 78899999987432 2222211 00 111122222 4667776522 3457788887
Q ss_pred CCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEec-------------------CCEEEEEECCCCCCCeEEeeccc-
Q 038533 199 DKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMD-------------------SNKVVILDIRSPTLPVAELERHR- 258 (337)
Q Consensus 199 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-------------------~~~i~i~d~~~~~~~~~~~~~~~- 258 (337)
+.+..............-+.+-|.| ..+.+++.... |..+.+||+.+ .++++++.--.
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~-r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWST-RKLLQTIDLGEE 243 (461)
T ss_dssp T--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTT-TEEEEEEES-TT
T ss_pred cccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCC-CcEeeEEecCCC
Confidence 7664444333222334567788888 77777775422 45699999998 66777775432
Q ss_pred -ceeeEEEe--CCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeee-----------------eCCCceeEEEEcc
Q 038533 259 -ACVNAIAW--APQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMY-----------------SAGSEINQLQWSP 318 (337)
Q Consensus 259 -~~v~~~~~--~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~ 318 (337)
..+..+.| .|+..+-++.+....+|..|-.. ....-..++...+. .-..-|+++..|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~--~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl 321 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKD--DDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL 321 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE---ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEc--CCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence 23445555 45565344444455555555442 11100001111111 1134579999999
Q ss_pred CCCceEEEE-cCCcEEEEeC
Q 038533 319 AQPDWLAIA-FSNKMQLLKV 337 (337)
Q Consensus 319 ~~~~l~~~~-~d~~i~iw~l 337 (337)
|.++|..++ .+|.++.|||
T Consensus 322 DDrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 322 DDRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp TS-EEEEEETTTTEEEEEE-
T ss_pred CCCEEEEEcccCCcEEEEec
Confidence 999999888 5899999986
No 393
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.66 E-value=0.4 Score=42.03 Aligned_cols=241 Identities=12% Similarity=0.167 Sum_probs=119.2
Q ss_pred EEEEe--cceEEEeee-eccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC----
Q 038533 26 AMAVC--GQRIAVGSF-IEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG---- 98 (337)
Q Consensus 26 ~~~~s--~~~la~g~~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~---- 98 (337)
..+++ +++||.+-. .+++.-.++++|+... ..... . +.. .....+.|.+++. .++.+..
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg--~~l~d-~--i~~-~~~~~~~W~~d~~--------~~~y~~~~~~~ 193 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG--KFLPD-G--IEN-PKFSSVSWSDDGK--------GFFYTRFDEDQ 193 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTT--EEEEE-E--EEE-EESEEEEECTTSS--------EEEEEECSTTT
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCC--cCcCC-c--ccc-cccceEEEeCCCC--------EEEEEEeCccc
Confidence 44555 888887754 2333455777666544 33220 0 111 1123499999987 3555542
Q ss_pred -------C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC---C-CcEEEEeCCCc----cch
Q 038533 99 -------D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI---D-TTCTIWDIEKG----VVE 162 (337)
Q Consensus 99 -------~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---d-g~i~v~d~~~~----~~~ 162 (337)
. .|..|++.+...+....+...... .....+..++ ++++++.... + ..+.+.|+..+ ...
T Consensus 194 ~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~---~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~ 269 (414)
T PF02897_consen 194 RTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEP---FWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKP 269 (414)
T ss_dssp SS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCT---TSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SE
T ss_pred ccccCCCCcEEEEEECCCChHhCeeEEeecCCC---cEEEEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCc
Confidence 2 488999888754434455543300 1156788887 8887665432 2 35788888764 122
Q ss_pred hhhhccCCce-eEEEeCCCcEEEEEc---CCCeEEEEECCCCCC--ce-eeecCCCCCCCceEEEeecCCCcEEEEEEec
Q 038533 163 TQLIAHDKEV-YDICWGEARVFASVS---ADGSVRIFDLRDKEH--ST-IIYESPQPDTPLLRLAWNKQDLRYMATILMD 235 (337)
Q Consensus 163 ~~~~~~~~~v-~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~--~~-~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 235 (337)
..+......+ ..+....+.+++... ..+.|.-.++..... .. .+... .....+..+.. .+.+|+....+
T Consensus 270 ~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~-~~~~~l~~~~~---~~~~Lvl~~~~ 345 (414)
T PF02897_consen 270 KLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE-DEDVSLEDVSL---FKDYLVLSYRE 345 (414)
T ss_dssp EEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEE---ETTEEEEEEEE
T ss_pred EEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC-CCceeEEEEEE---ECCEEEEEEEE
Confidence 2333233333 333333344444332 246677778887763 12 22222 11123555544 34445444443
Q ss_pred CC--EEEEEECCCCCCCeEEee-cccceeeEEEeCCCCCCeEEEEcC---CCcEEEEeCC
Q 038533 236 SN--KVVILDIRSPTLPVAELE-RHRACVNAIAWAPQSRRHICSVGD---DSQAFIWELP 289 (337)
Q Consensus 236 ~~--~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~iw~~~ 289 (337)
+. .|+++|+.. +.....+. .-.+.|..+...++++.+.++.+. -+++..||+.
T Consensus 346 ~~~~~l~v~~~~~-~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~ 404 (414)
T PF02897_consen 346 NGSSRLRVYDLDD-GKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLA 404 (414)
T ss_dssp TTEEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETT
T ss_pred CCccEEEEEECCC-CcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence 33 588999882 22222222 223456666666666644444442 2467777777
No 394
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.65 E-value=0.47 Score=42.63 Aligned_cols=140 Identities=12% Similarity=0.034 Sum_probs=77.1
Q ss_pred CCCeEEEeeCCC------------------cEEEEeCCCccchhhhhc--cCC--------c-eeEEE-eC--CCcEEEE
Q 038533 138 EPKRIGTCSIDT------------------TCTIWDIEKGVVETQLIA--HDK--------E-VYDIC-WG--EARVFAS 185 (337)
Q Consensus 138 ~~~~l~~~~~dg------------------~i~v~d~~~~~~~~~~~~--~~~--------~-v~~~~-~~--~~~~l~~ 185 (337)
....++.++.++ .|.-+|.++++.+-.++. +.. + +..+. .+ +...++.
T Consensus 227 ~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~ 306 (488)
T cd00216 227 KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVH 306 (488)
T ss_pred CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEE
Confidence 456777777665 799999999987765542 110 0 11111 11 1236788
Q ss_pred EcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEE------------------EecCCEEEEEECCCC
Q 038533 186 VSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATI------------------LMDSNKVVILDIRSP 247 (337)
Q Consensus 186 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~------------------~~d~~~i~i~d~~~~ 247 (337)
++.+|.+...|.++++..-..... ...+..+| ..++.+ ..++. +.-.|+.+
T Consensus 307 g~~~G~l~ald~~tG~~~W~~~~~------~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~-l~AlD~~t- 375 (488)
T cd00216 307 APKNGFFYVLDRTTGKLISARPEV------EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGG-LAALDPKT- 375 (488)
T ss_pred ECCCceEEEEECCCCcEeeEeEee------ccccccCC---ceEEEccccccccCcccccCCCCCCCceE-EEEEeCCC-
Confidence 889999999999999854433211 01122222 222221 12344 77777776
Q ss_pred CCCeEEeeccc--------cee--eEEEeCCCCCCeEEEEcCCCcEEEEeCCCC
Q 038533 248 TLPVAELERHR--------ACV--NAIAWAPQSRRHICSVGDDSQAFIWELPLP 291 (337)
Q Consensus 248 ~~~~~~~~~~~--------~~v--~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 291 (337)
++.+-...... .+. ..+.. .+. +++.++.||.|+.+|...+
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~-~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGN-LVFAGAADGYFRAFDATTG 426 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceEe--cCC-eEEEECCCCeEEEEECCCC
Confidence 33333332110 111 11222 344 7888899999999999843
No 395
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.57 E-value=0.51 Score=41.98 Aligned_cols=178 Identities=12% Similarity=0.281 Sum_probs=102.4
Q ss_pred CCeeEEEeecCCCCeEEEee---CCCcEEEEeCCCccchhhhhccCCceeEEEeCC-----CcEEEEEcCCCeEEEEECC
Q 038533 127 APLTSFDWNEIEPKRIGTCS---IDTTCTIWDIEKGVVETQLIAHDKEVYDICWGE-----ARVFASVSADGSVRIFDLR 198 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~-----~~~l~~~~~dg~i~iwd~~ 198 (337)
.++..++|. ||+.++-.. .+|.+++=|- +.+ +.-+.|..+.|.| .-.+++.-....|.+|-+-
T Consensus 20 HPvhGlaWT--DGkqVvLT~L~l~~gE~kfGds---~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWT--DGKQVVLTDLQLHNGEPKFGDS---KVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEec--CCCEEEEEeeeeeCCccccCCc---cEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 578899995 666555433 2344443221 122 3345689999993 2256666777899999986
Q ss_pred CC--CCceeee-cCCC--CCC--CceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCC
Q 038533 199 DK--EHSTIIY-ESPQ--PDT--PLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSR 271 (337)
Q Consensus 199 ~~--~~~~~~~-~~~~--~~~--~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 271 (337)
.. +..+.+. .... ..- --..+.|+| ....|++-..... -.+++++.....++.--...+-|.|.+|.+||+
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dv-SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDV-SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ 168 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCce-eEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence 22 1111110 0000 011 124578999 7777777666654 456677765544443334567899999999999
Q ss_pred CeEEEEcCCCcEEEEeCCCCCCCCCCCCCce-eeeeCCCceeEEEEccC
Q 038533 272 RHICSVGDDSQAFIWELPLPPVAGPNGIDPM-SMYSAGSEINQLQWSPA 319 (337)
Q Consensus 272 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~ 319 (337)
+++++.+..=.-++||-...++.. ..+ ..+.-.+.|.++.-.-+
T Consensus 169 RLVVAvGSsLHSyiWd~~qKtL~~----CsfcPVFdv~~~Icsi~AT~d 213 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQKTLHR----CSFCPVFDVGGYICSIEATVD 213 (671)
T ss_pred EEEEEeCCeEEEEEecCchhhhhh----CCcceeecCCCceEEEEEecc
Confidence 666666655567788876333221 111 33344556666554443
No 396
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.48 E-value=0.39 Score=39.71 Aligned_cols=281 Identities=11% Similarity=0.055 Sum_probs=122.8
Q ss_pred eeeeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCC--CCCCeEEEecCCCCcccCcCC
Q 038533 15 SVTHESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDH--PYPPTKLMFDPNSSSRKSSSN 90 (337)
Q Consensus 15 ~~~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~~~~~~~~~~~~~ 90 (337)
...+....++..|+|. ..-+|+|. .+.| +.-............- ... .....+|.|..+ .
T Consensus 10 ~v~l~t~~~l~dV~F~d~~~G~~VG~-----~g~i--l~T~DGG~tW~~~~~~-~~~~~~~~l~~I~f~~~-~------- 73 (302)
T PF14870_consen 10 QVSLPTDKPLLDVAFVDPNHGWAVGA-----YGTI--LKTTDGGKTWQPVSLD-LDNPFDYHLNSISFDGN-E------- 73 (302)
T ss_dssp EEE-S-SS-EEEEEESSSS-EEEEET-----TTEE--EEESSTTSS-EE------S-----EEEEEEEETT-E-------
T ss_pred EeecCCCCceEEEEEecCCEEEEEec-----CCEE--EEECCCCccccccccC-CCccceeeEEEEEecCC-c-------
Confidence 3445567899999999 56666666 5654 3355544444431111 111 223567777643 3
Q ss_pred ccEEEEeCCeEEEEecCCCC-ccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhh-hhcc
Q 038533 91 RHLLASSGDFLRLWDVGDSS-IEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQ-LIAH 168 (337)
Q Consensus 91 ~~~l~~~~~~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~-~~~~ 168 (337)
.+++|...+.+...+.++ .+.+. +... .......+.... ++..++ ++..|.|..= ...++.-.. ....
T Consensus 74 --g~ivG~~g~ll~T~DgG~tW~~v~-l~~~----lpgs~~~i~~l~-~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~~ 143 (302)
T PF14870_consen 74 --GWIVGEPGLLLHTTDGGKTWERVP-LSSK----LPGSPFGITALG-DGSAEL-AGDRGAIYRT-TDGGKTWQAVVSET 143 (302)
T ss_dssp --EEEEEETTEEEEESSTTSS-EE-----TT-----SS-EEEEEEEE-TTEEEE-EETT--EEEE-SSTTSSEEEEE-S-
T ss_pred --eEEEcCCceEEEecCCCCCcEEee-cCCC----CCCCeeEEEEcC-CCcEEE-EcCCCcEEEe-CCCCCCeeEcccCC
Confidence 555555444444444442 11111 1100 002223333333 333333 3445554432 223332211 2233
Q ss_pred CCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCC
Q 038533 169 DKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP 247 (337)
Q Consensus 169 ~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~ 247 (337)
.+.+..+.-+ ++.+++++.......-||.....-...... ....|..+.|.| ++.+.+++ ..+. |++=+....
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~---~~~riq~~gf~~-~~~lw~~~-~Gg~-~~~s~~~~~ 217 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN---SSRRIQSMGFSP-DGNLWMLA-RGGQ-IQFSDDPDD 217 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-----SSS-EEEEEE-T-TS-EEEEE-TTTE-EEEEE-TTE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccC---ccceehhceecC-CCCEEEEe-CCcE-EEEccCCCC
Confidence 4667887777 788777777666666788654432222222 347899999999 76665544 4444 777762211
Q ss_pred C----CCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCce
Q 038533 248 T----LPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDW 323 (337)
Q Consensus 248 ~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 323 (337)
. +++..+......+..++|.+++. +.++|+ .|.+ +...+.++.=+ +......-....+.+.|.+.. .-
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l-~~S~DgGktW~----~~~~~~~~~~n~~~i~f~~~~-~g 289 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTL-LVSTDGGKTWQ----KDRVGENVPSNLYRIVFVNPD-KG 289 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-E-EEESSTTSS-E----E-GGGTTSSS---EEEEEETT-EE
T ss_pred ccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccE-EEeCCCCccce----ECccccCCCCceEEEEEcCCC-ce
Confidence 1 11111112233578999999987 777666 4443 33333111000 000111123457888887665 56
Q ss_pred EEEEcCCcEEEE
Q 038533 324 LAIAFSNKMQLL 335 (337)
Q Consensus 324 ~~~~~d~~i~iw 335 (337)
++.+.+|.|.-|
T Consensus 290 f~lG~~G~ll~~ 301 (302)
T PF14870_consen 290 FVLGQDGVLLRY 301 (302)
T ss_dssp EEE-STTEEEEE
T ss_pred EEECCCcEEEEe
Confidence 777888887655
No 397
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.45 E-value=0.12 Score=40.15 Aligned_cols=98 Identities=12% Similarity=0.131 Sum_probs=66.0
Q ss_pred CCCeEEEecCCCCcccCcCCccEEEEeC-C-eEEEEe--cCCCCc---cceeeecCCCCCcccCCeeEEEeecCCCCeEE
Q 038533 71 YPPTKLMFDPNSSSRKSSSNRHLLASSG-D-FLRLWD--VGDSSI---EPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIG 143 (337)
Q Consensus 71 ~~i~~i~~~~~~~~~~~~~~~~~l~~~~-~-~v~vw~--~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 143 (337)
.--+.++|+.+.+ .+..+-+ + +|.-|| ..++.. +.+..++..+..+. ..--.++... ++++.+
T Consensus 158 ~IsNgl~Wd~d~K--------~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~-~~PDGm~ID~-eG~L~V 227 (310)
T KOG4499|consen 158 GISNGLAWDSDAK--------KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFES-LEPDGMTIDT-EGNLYV 227 (310)
T ss_pred cCCccccccccCc--------EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCC-CCCCcceEcc-CCcEEE
Confidence 3346789998877 3444444 4 887787 556542 22223332111111 1122344454 889999
Q ss_pred EeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC
Q 038533 144 TCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG 178 (337)
Q Consensus 144 ~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 178 (337)
+.-..++|...|..+|+.+.+++-....|++++|-
T Consensus 228 a~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 228 ATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred EEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 99999999999999999999888788899999998
No 398
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.086 Score=50.07 Aligned_cols=153 Identities=12% Similarity=0.129 Sum_probs=94.1
Q ss_pred CCCCCeEEEecCCCCcccCcCCccEEEE--eC-C-eEEEEecCCCCc---cceeeecCCCCC-cccCCeeEEEeecCCCC
Q 038533 69 HPYPPTKLMFDPNSSSRKSSSNRHLLAS--SG-D-FLRLWDVGDSSI---EPVAVLNNSKSS-EFCAPLTSFDWNEIEPK 140 (337)
Q Consensus 69 ~~~~i~~i~~~~~~~~~~~~~~~~~l~~--~~-~-~v~vw~~~~~~~---~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~ 140 (337)
..-+|..+...+|.. +.++ .+ + .|..||+.+-.. +....|..|... +......++.|+|.-..
T Consensus 99 k~~pi~~~v~~~D~t---------~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~ 169 (1405)
T KOG3630|consen 99 KEIPIVIFVCFHDAT---------DSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL 169 (1405)
T ss_pred ccccceEEEeccCCc---------eEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc
Confidence 344566666677765 4333 23 4 899999876421 112222222210 11134668899996667
Q ss_pred eEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEE
Q 038533 141 RIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRL 219 (337)
Q Consensus 141 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~ 219 (337)
..++...|+.|++..+........--......++++|+ .|+.++.|...|++.-|-..-......-.........|.+|
T Consensus 170 n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v 249 (1405)
T KOG3630|consen 170 NSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSV 249 (1405)
T ss_pred hhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEE
Confidence 78888899999998765433222211245568999999 69999999999999988765442211111111224789999
Q ss_pred EeecCCCcEEEE
Q 038533 220 AWNKQDLRYMAT 231 (337)
Q Consensus 220 ~~~~~~~~~l~~ 231 (337)
+|-. ...++++
T Consensus 250 ~Wl~-t~eflvv 260 (1405)
T KOG3630|consen 250 TWLS-TQEFLVV 260 (1405)
T ss_pred EEec-ceeEEEE
Confidence 9986 5555554
No 399
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.4 Score=38.57 Aligned_cols=210 Identities=10% Similarity=0.102 Sum_probs=117.8
Q ss_pred CCCCCCeEEEecCCCCcccCcCCccEEEEeC--C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEE
Q 038533 68 DHPYPPTKLMFDPNSSSRKSSSNRHLLASSG--D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGT 144 (337)
Q Consensus 68 ~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~--~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 144 (337)
.....-..|.|+|..+ .-++-+- + ...++|.++.+ ...++...+.. .-.-.=.||| ++.+|.+
T Consensus 65 ~lpaR~Hgi~~~p~~~--------ravafARrPGtf~~vfD~~~~~--~pv~~~s~~~R---HfyGHGvfs~-dG~~LYA 130 (366)
T COG3490 65 ALPARGHGIAFHPALP--------RAVAFARRPGTFAMVFDPNGAQ--EPVTLVSQEGR---HFYGHGVFSP-DGRLLYA 130 (366)
T ss_pred ecccccCCeecCCCCc--------ceEEEEecCCceEEEECCCCCc--CcEEEecccCc---eeecccccCC-CCcEEEe
Confidence 4455667889999877 4555555 3 78899998874 33333222110 1111235788 8888887
Q ss_pred eeC-----CCcEEEEeCCCc-cchhhhhccCCceeEEEeC-CCcEEEEEcCC------------------CeEEEEECCC
Q 038533 145 CSI-----DTTCTIWDIEKG-VVETQLIAHDKEVYDICWG-EARVFASVSAD------------------GSVRIFDLRD 199 (337)
Q Consensus 145 ~~~-----dg~i~v~d~~~~-~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d------------------g~i~iwd~~~ 199 (337)
.-. -|.|-|||.+.+ +.+-.+..|.-....+.|. +++.++.+... -.+.+.|..+
T Consensus 131 TEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at 210 (366)
T COG3490 131 TENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT 210 (366)
T ss_pred ecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence 643 367999998754 3455677777777888888 88888776420 1233333333
Q ss_pred CCCceee-ecCCCCCCCceEEEeecCCCcEEEEEEecCCE---EEEEECCCCCCCeEEee-------cccceeeEEEeCC
Q 038533 200 KEHSTII-YESPQPDTPLLRLAWNKQDLRYMATILMDSNK---VVILDIRSPTLPVAELE-------RHRACVNAIAWAP 268 (337)
Q Consensus 200 ~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~---i~i~d~~~~~~~~~~~~-------~~~~~v~~~~~~~ 268 (337)
++.+... .....+...+..++..+ ++..++.+-..|.. --+.-....+++++-+. .....|-+++.+.
T Consensus 211 G~liekh~Lp~~l~~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~ 289 (366)
T COG3490 211 GNLIEKHTLPASLRQLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR 289 (366)
T ss_pred cchhhhccCchhhhhcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc
Confidence 3322111 11112345677777776 66666655444320 00111111123333222 1234677888887
Q ss_pred CCCCeEEEEcCCCcEEEEeCCCCC
Q 038533 269 QSRRHICSVGDDSQAFIWELPLPP 292 (337)
Q Consensus 269 ~~~~~l~~~~~dg~i~iw~~~~~~ 292 (337)
+...+.+|.-..+...+||...+.
T Consensus 290 ~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 290 RDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred cCCeEEEecCCCCeEEEEEcCCCc
Confidence 666345555566678899999443
No 400
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.4 Score=38.54 Aligned_cols=244 Identities=12% Similarity=0.091 Sum_probs=121.9
Q ss_pred ceeeeeCCCceeEEEEe---cceEEEeeeeccCcce-EEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcC
Q 038533 14 NSVTHESPYPLYAMAVC---GQRIAVGSFIEDYTNR-VDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSS 89 (337)
Q Consensus 14 ~~~~~~~~~~v~~~~~s---~~~la~g~~~~~~d~~-i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~ 89 (337)
.+.....+.....|+|+ +.-++.+-. -|+ ..++|.+......... ..+..| ---.=.||||+.
T Consensus 60 ~v~~~~lpaR~Hgi~~~p~~~ravafARr----PGtf~~vfD~~~~~~pv~~~-s~~~RH--fyGHGvfs~dG~------ 126 (366)
T COG3490 60 IVFATALPARGHGIAFHPALPRAVAFARR----PGTFAMVFDPNGAQEPVTLV-SQEGRH--FYGHGVFSPDGR------ 126 (366)
T ss_pred eeeeeecccccCCeecCCCCcceEEEEec----CCceEEEECCCCCcCcEEEe-cccCce--eecccccCCCCc------
Confidence 33444445555666666 555555554 333 3455555443332220 000011 111235899998
Q ss_pred CccEEEEeC-C------eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEE---------
Q 038533 90 NRHLLASSG-D------FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTI--------- 153 (337)
Q Consensus 90 ~~~~l~~~~-~------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v--------- 153 (337)
+|.... | .|-|||...+ +..+..+..|. -.-..+.|.+ ++..++.+. |-|..
T Consensus 127 ---~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~G-----iGpHev~lm~-DGrtlvvan--GGIethpdfgR~~l 194 (366)
T COG3490 127 ---LLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHG-----IGPHEVTLMA-DGRTLVVAN--GGIETHPDFGRTEL 194 (366)
T ss_pred ---EEEeecCCCCCCCceEEEEecccc-cceecccccCC-----cCcceeEEec-CCcEEEEeC--CceecccccCcccc
Confidence 655542 2 7999999843 45666677665 4556788888 999888874 43433
Q ss_pred -----------EeCCCccchhhh--h--ccCCceeEEEeC-CCcEEEEEcCCCe-----EEEEECCCCCCceeeecCC--
Q 038533 154 -----------WDIEKGVVETQL--I--AHDKEVYDICWG-EARVFASVSADGS-----VRIFDLRDKEHSTIIYESP-- 210 (337)
Q Consensus 154 -----------~d~~~~~~~~~~--~--~~~~~v~~~~~~-~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~-- 210 (337)
.|..+++.+.+. . .+...|..++.. ++..++.+-..|. -.+=-.+.++....+...+
T Consensus 195 NldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~ 274 (366)
T COG3490 195 NLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQ 274 (366)
T ss_pred chhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHH
Confidence 333344433221 1 223345555555 3333333222211 0000111111111110000
Q ss_pred --CCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeC
Q 038533 211 --QPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWEL 288 (337)
Q Consensus 211 --~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~ 288 (337)
.-...|-+++.+. +..+++..+-.|+...+||..+ +..+..-.- .....++ +... -++..+.+|.+.++.-
T Consensus 275 ~~~~anYigsiA~n~-~~glV~lTSP~GN~~vi~da~t-G~vv~~a~l--~daaGva--~~~~-gf~vssg~G~~~~~s~ 347 (366)
T COG3490 275 TAAFANYIGSIAANR-RDGLVALTSPRGNRAVIWDAAT-GAVVSEAAL--PDAAGVA--AAKG-GFAVSSGQGRIIFYSR 347 (366)
T ss_pred HHHHHhhhhheeecc-cCCeEEEecCCCCeEEEEEcCC-CcEEecccc--cccccce--eccC-ceEEecCCceEEeccc
Confidence 0123566777776 5667777777777799999998 443322211 1122222 2233 4666677899988855
Q ss_pred C
Q 038533 289 P 289 (337)
Q Consensus 289 ~ 289 (337)
.
T Consensus 348 ~ 348 (366)
T COG3490 348 A 348 (366)
T ss_pred c
Confidence 4
No 401
>PHA03098 kelch-like protein; Provisional
Probab=96.27 E-value=0.48 Score=43.13 Aligned_cols=174 Identities=12% Similarity=0.047 Sum_probs=84.2
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCC-----CcEEEEeCCCccch--hhhhccCCce
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSID-----TTCTIWDIEKGVVE--TQLIAHDKEV 172 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----g~i~v~d~~~~~~~--~~~~~~~~~v 172 (337)
.+..||..+.+......+.... .....+.+ ++.+++.|+.+ ..+..||..+++-. ..+. +...-
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R-----~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp-~~r~~ 382 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPR-----KNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLI-FPRYN 382 (534)
T ss_pred cEEEEeCCCCeeeECCCCCccc-----ccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcC-cCCcc
Confidence 4677888777543333332211 22222222 66788888865 34777888765421 1111 11111
Q ss_pred eEEEeCCCcEEEEEcCC------CeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecC-------CEE
Q 038533 173 YDICWGEARVFASVSAD------GSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDS-------NKV 239 (337)
Q Consensus 173 ~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~-------~~i 239 (337)
.+++..++++++.|+.+ ..+..||+.+.+-.... ..+..... .++... ++.+++.|+.+. ..+
T Consensus 383 ~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~-~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~v 458 (534)
T PHA03098 383 PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS-PLPISHYG-GCAIYH--DGKIYVIGGISYIDNIKVYNIV 458 (534)
T ss_pred ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC-CCCccccC-ceEEEE--CCEEEEECCccCCCCCcccceE
Confidence 22222367777777742 45888998876532221 11111111 222222 566666666432 127
Q ss_pred EEEECCCCC-CCeEEeecccceeeEEEeCCCCCCeEEEEcCC-----CcEEEEeCC
Q 038533 240 VILDIRSPT-LPVAELERHRACVNAIAWAPQSRRHICSVGDD-----SQAFIWELP 289 (337)
Q Consensus 240 ~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~ 289 (337)
.+||..+.. ..+..+.........+.+ ++. +++.|+.+ +.+.+||..
T Consensus 459 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 459 ESYNPVTNKWTELSSLNFPRINASLCIF--NNK-IYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred EEecCCCCceeeCCCCCcccccceEEEE--CCE-EEEEcCCcCCcccceeEEEeCC
Confidence 888987632 111111111111112222 455 67777654 457777776
No 402
>PHA03098 kelch-like protein; Provisional
Probab=96.26 E-value=0.88 Score=41.46 Aligned_cols=141 Identities=9% Similarity=0.041 Sum_probs=71.8
Q ss_pred EEEEeC-C------eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCC------CcEEEEeCCCc
Q 038533 93 LLASSG-D------FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSID------TTCTIWDIEKG 159 (337)
Q Consensus 93 ~l~~~~-~------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d------g~i~v~d~~~~ 159 (337)
+++.|| + .+..||..+++......+.... ... +++. .++.+++.|+.+ ..+..||+.++
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r-----~~~-~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR-----YNP-CVVN--VNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC-----ccc-eEEE--ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 666665 2 5778888887554433333211 111 1222 156777877732 35888998765
Q ss_pred cc--hhhhhccCCceeEEEeCCCcEEEEEcCC--------CeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEE
Q 038533 160 VV--ETQLIAHDKEVYDICWGEARVFASVSAD--------GSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYM 229 (337)
Q Consensus 160 ~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 229 (337)
+- +..+..... -.+++..++.+++.|+.+ ..+.+||..+.+-..... .+........+.+ ++.++
T Consensus 417 ~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~~---~~~iy 491 (534)
T PHA03098 417 KWSKGSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS-LNFPRINASLCIF---NNKIY 491 (534)
T ss_pred eeeecCCCCcccc-CceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC-CCcccccceEEEE---CCEEE
Confidence 42 111111111 112222356677777643 238889988765332211 1111111222222 56677
Q ss_pred EEEEecC----CEEEEEECCC
Q 038533 230 ATILMDS----NKVVILDIRS 246 (337)
Q Consensus 230 ~~~~~d~----~~i~i~d~~~ 246 (337)
+.|+.++ ..+.+||..+
T Consensus 492 v~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 492 VVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred EEcCCcCCcccceeEEEeCCC
Confidence 7776542 2388888776
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.07 E-value=0.22 Score=45.27 Aligned_cols=105 Identities=17% Similarity=0.291 Sum_probs=63.4
Q ss_pred CcEEEEEEecCCEEEEEECCCCCCCeEEee-cccceeeEEEeC--CCCCCeEEEEcCCCcEEEEeCCC-CCCC-CCCCCC
Q 038533 226 LRYMATILMDSNKVVILDIRSPTLPVAELE-RHRACVNAIAWA--PQSRRHICSVGDDSQAFIWELPL-PPVA-GPNGID 300 (337)
Q Consensus 226 ~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~~~~~dg~i~iw~~~~-~~~~-~~~~~~ 300 (337)
-+.++....++..+.|||.+... ...... ...+.|..+.|. |+++ .+++.+....|.+|.-.. .-.. .| ...
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f~~~~~I~dLDWtst~d~q-siLaVGf~~~v~l~~Q~R~dy~~~~p-~w~ 116 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGV-LEYEESFSEDDPIRDLDWTSTPDGQ-SILAVGFPHHVLLYTQLRYDYTNKGP-SWA 116 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcE-EEEeeeecCCCceeeceeeecCCCC-EEEEEEcCcEEEEEEccchhhhcCCc-ccc
Confidence 34455556777779999998733 222211 336789999885 6787 777777788888885531 1111 11 111
Q ss_pred ce---eeeeCC-CceeEEEEccCCCceEEEEcCCcEEEE
Q 038533 301 PM---SMYSAG-SEINQLQWSPAQPDWLAIAFSNKMQLL 335 (337)
Q Consensus 301 ~~---~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iw 335 (337)
+. .+..+. .+|.+..|.++|. ++.+ .++.+.|+
T Consensus 117 ~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~-sGNqlfv~ 153 (631)
T PF12234_consen 117 PIRKIDISSHTPHPIGDSIWLKDGT-LVVG-SGNQLFVF 153 (631)
T ss_pred eeEEEEeecCCCCCccceeEecCCe-EEEE-eCCEEEEE
Confidence 11 233444 6799999999994 3333 34556554
No 404
>PHA02790 Kelch-like protein; Provisional
Probab=95.91 E-value=0.98 Score=40.50 Aligned_cols=138 Identities=9% Similarity=-0.014 Sum_probs=71.5
Q ss_pred EEEEeC-C---eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCC---cEEEEeCCCccch--h
Q 038533 93 LLASSG-D---FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT---TCTIWDIEKGVVE--T 163 (337)
Q Consensus 93 ~l~~~~-~---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg---~i~v~d~~~~~~~--~ 163 (337)
+.+.|| + .+..||..+++......+.... .....+.. ++.+.+.|+.++ .+..||.++.+-. .
T Consensus 321 iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r-----~~~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~ 392 (480)
T PHA02790 321 LYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPR-----CNPAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQWQFGP 392 (480)
T ss_pred EEEECCcCCCCceEEEECCCCeEEECCCCCCCC-----cccEEEEE---CCEEEEecCcCCCCccEEEEeCCCCEEEeCC
Confidence 777776 2 7888988776544444443221 11222222 678888887654 4678888765421 1
Q ss_pred hhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC----EE
Q 038533 164 QLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN----KV 239 (337)
Q Consensus 164 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~----~i 239 (337)
.+...... .+++..++.+.+.| |.+.+||.++.+-.... ..+........+.+ ++++.++||.++. .+
T Consensus 393 ~m~~~r~~-~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~~~-~m~~~r~~~~~~v~---~~~IYviGG~~~~~~~~~v 464 (480)
T PHA02790 393 STYYPHYK-SCALVFGRRLFLVG---RNAEFYCESSNTWTLID-DPIYPRDNPELIIV---DNKLLLIGGFYRGSYIDTI 464 (480)
T ss_pred CCCCcccc-ceEEEECCEEEEEC---CceEEecCCCCcEeEcC-CCCCCccccEEEEE---CCEEEEECCcCCCcccceE
Confidence 12111111 12222256666666 35778998876533221 11111222222333 6777777775421 26
Q ss_pred EEEECCC
Q 038533 240 VILDIRS 246 (337)
Q Consensus 240 ~i~d~~~ 246 (337)
..||..+
T Consensus 465 e~Yd~~~ 471 (480)
T PHA02790 465 EVYNNRT 471 (480)
T ss_pred EEEECCC
Confidence 7777765
No 405
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.2 Score=47.76 Aligned_cols=135 Identities=17% Similarity=0.197 Sum_probs=84.8
Q ss_pred EEcCCCeEEEEECCCCCCcee--e------ecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeec
Q 038533 185 SVSADGSVRIFDLRDKEHSTI--I------YESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELER 256 (337)
Q Consensus 185 ~~~~dg~i~iwd~~~~~~~~~--~------~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~ 256 (337)
..+.+-.|..||++.-..... . ...........++.|+|.-....++...|+. |++..+......+..+.
T Consensus 119 ~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls-l~V~~~~~~~~~v~s~p- 196 (1405)
T KOG3630|consen 119 STSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS-LRVKSTKQLAQNVTSFP- 196 (1405)
T ss_pred EecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc-hhhhhhhhhhhhhcccC-
Confidence 334445789999986532110 0 0111123456788999955566777777887 88887765343344433
Q ss_pred ccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEE
Q 038533 257 HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAI 326 (337)
Q Consensus 257 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 326 (337)
.....++++|+|.|+ .++.|-..|++.-|.....-... ....+. ....+|.++.|-....+++.-
T Consensus 197 ~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~leik~~-ip~Pp~---~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 197 VTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPSLEIKSE-IPEPPV---EENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred cccceeeEEeccccc-eeeEecCCCeEEEeecccceeec-ccCCCc---CCCcceeEEEEecceeEEEEe
Confidence 345789999999999 99999999999888766221010 000111 115679999999887666653
No 406
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=1.5 Score=40.26 Aligned_cols=175 Identities=11% Similarity=0.217 Sum_probs=87.7
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhh----hccCCceeEE
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQL----IAHDKEVYDI 175 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~----~~~~~~v~~~ 175 (337)
.|+||+.... ++..+.... ..+-.+.|+. ...|++...+|.+++|++- |+.+... ......|..+
T Consensus 65 ~I~If~~sG~---lL~~~~w~~-----~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec 133 (829)
T KOG2280|consen 65 YIRIFNISGQ---LLGRILWKH-----GELIGMGWSD--DEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVEC 133 (829)
T ss_pred eEEEEecccc---chHHHHhcC-----CCeeeecccC--CceEEEEeccceEEEeecc-hhhhcccccccccccCceeEE
Confidence 7889988765 332222222 5677999984 5667777899999999984 3333221 1122334444
Q ss_pred EeC-CCcEEEEEcCCCeE-EEEECCCCCCceeeecCCCCCCCceEEEeecC--CCcEEEEEEecCCEEEEEECCCCCCCe
Q 038533 176 CWG-EARVFASVSADGSV-RIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQ--DLRYMATILMDSNKVVILDIRSPTLPV 251 (337)
Q Consensus 176 ~~~-~~~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~d~~~i~i~d~~~~~~~~ 251 (337)
.+. .|-.+++.+ |.+ .+-+..... .......+....+..|-...+. ....++-....-. ..++.........
T Consensus 134 ~~f~~GVavlt~~--g~v~~i~~~~~~~-~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~ 209 (829)
T KOG2280|consen 134 RFFHNGVAVLTVS--GQVILINGVEEPK-LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQL 209 (829)
T ss_pred EEecCceEEEecC--CcEEEEcCCCcch-hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccc
Confidence 444 554444433 443 333443322 1111111111112122222220 1122222111111 2222222212112
Q ss_pred EEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCC
Q 038533 252 AELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL 290 (337)
Q Consensus 252 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 290 (337)
..+......+..+..||+.+ +|+--..+|.|.+-+.+.
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~-~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRR-FLALYTETGKIWVVSIDL 247 (829)
T ss_pred cccCCCCceEEEEEEcCCcc-eEEEEecCCcEEEEecch
Confidence 22222235678899999998 999999999999988873
No 407
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.78 E-value=1.9 Score=41.19 Aligned_cols=172 Identities=12% Similarity=0.191 Sum_probs=103.7
Q ss_pred CCCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCC-------------CccceeeecCCCCCcccCCeeEEE
Q 038533 68 DHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDS-------------SIEPVAVLNNSKSSEFCAPLTSFD 133 (337)
Q Consensus 68 ~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~-------------~~~~~~~~~~~~~~~~~~~i~~~~ 133 (337)
....+|..|+|..... ..+..+.+|++-.. .+.|+...-. ...++..+..+...+ .+..+++
T Consensus 77 ~~~~PI~qI~fa~~~~--~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg--~~~aDv~ 152 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSE--SFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGG--FPHADVA 152 (765)
T ss_pred CCCCCeeEEEeccccc--ccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCC--CccceEE
Confidence 5678899999982111 00111247777776 7777772211 113344444333222 4677999
Q ss_pred eecCCCCeEEEeeCCCcEEEEeCCCcc-----chhhhhccC----------CceeEEEeC-CCcEEEEEcCCCeEEEEEC
Q 038533 134 WNEIEPKRIGTCSIDTTCTIWDIEKGV-----VETQLIAHD----------KEVYDICWG-EARVFASVSADGSVRIFDL 197 (337)
Q Consensus 134 ~~~~~~~~l~~~~~dg~i~v~d~~~~~-----~~~~~~~~~----------~~v~~~~~~-~~~~l~~~~~dg~i~iwd~ 197 (337)
|+|.+...||+....|...||++.... .+.....+. +.-..+.|. +.+.|+.++. ..+.++|+
T Consensus 153 FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~ 231 (765)
T PF10214_consen 153 FNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDF 231 (765)
T ss_pred eccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEEC
Confidence 999888899999999999999992211 010000111 223467787 5566776665 56889999
Q ss_pred CCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCC
Q 038533 198 RDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP 247 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~ 247 (337)
++......+... .....|..+.-+|.+..+++.-+. .. |...|+...
T Consensus 232 ~~~~~~~~l~~~-~~~~~IlDv~~~~~~~~~~FiLTs-~e-iiw~~~~~~ 278 (765)
T PF10214_consen 232 ESNWQTEYLVTA-KTWSWILDVKRSPDNPSHVFILTS-KE-IIWLDVKSS 278 (765)
T ss_pred CCCCccchhccC-CChhheeeEEecCCccceEEEEec-Ce-EEEEEccCC
Confidence 987653322222 345778999888854455554443 33 888888873
No 408
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.83 Score=37.02 Aligned_cols=279 Identities=11% Similarity=0.085 Sum_probs=151.0
Q ss_pred eeeeCCCceeEEEEecceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEE
Q 038533 16 VTHESPYPLYAMAVCGQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLA 95 (337)
Q Consensus 16 ~~~~~~~~v~~~~~s~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~ 95 (337)
......+-+..+.+++++...+.. +.-++|.|+.....+-+. .. ....+--.++.. .|+ ++.
T Consensus 81 ~~i~~~~l~~Dv~vse~yvyvad~----ssGL~IvDIS~P~sP~~~--~~-lnt~gyaygv~v--sGn---------~aY 142 (370)
T COG5276 81 SVINARDLFADVRVSEEYVYVADW----SSGLRIVDISTPDSPTLI--GF-LNTDGYAYGVYV--SGN---------YAY 142 (370)
T ss_pred EEEehhhhhheeEecccEEEEEcC----CCceEEEeccCCCCccee--cc-ccCCceEEEEEe--cCC---------EEE
Confidence 334456778888888788877776 888999998876655443 11 122233334443 344 444
Q ss_pred EeC-C-eEEEEecCCCC-ccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhcc---C
Q 038533 96 SSG-D-FLRLWDVGDSS-IEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAH---D 169 (337)
Q Consensus 96 ~~~-~-~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~---~ 169 (337)
.+. + -+-+.|+.+.+ +.+...+.... ..-..++. .+++-..+..|+-+.+.|+.....- .+.+| .
T Consensus 143 VadlddgfLivdvsdpssP~lagrya~~~-----~d~~~v~I---SGn~AYvA~~d~GL~ivDVSnp~sP-vli~~~n~g 213 (370)
T COG5276 143 VADLDDGFLIVDVSDPSSPQLAGRYALPG-----GDTHDVAI---SGNYAYVAWRDGGLTIVDVSNPHSP-VLIGSYNTG 213 (370)
T ss_pred EeeccCcEEEEECCCCCCceeeeeeccCC-----CCceeEEE---ecCeEEEEEeCCCeEEEEccCCCCC-eEEEEEecC
Confidence 444 4 77788887764 23333333332 33345665 4677777788999999998765421 12222 2
Q ss_pred CceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCC
Q 038533 170 KEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTL 249 (337)
Q Consensus 170 ~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~ 249 (337)
..+.++..++++-+++....| +.+-|....+.+..+-.. ....+.++.--|-.+++......+.. +.+-|+.++..
T Consensus 214 ~g~~sv~vsdnr~y~vvy~eg-vlivd~s~~ssp~~~gsy--et~~p~~~s~v~Vs~~~~Yvadga~g-l~~idisnp~s 289 (370)
T COG5276 214 PGTYSVSVSDNRAYLVVYDEG-VLIVDVSGPSSPTVFGSY--ETSNPVSISTVPVSGEYAYVADGAKG-LPIIDISNPPS 289 (370)
T ss_pred CceEEEEecCCeeEEEEcccc-eEEEecCCCCCceEeecc--ccCCcccccceecccceeeeeccccC-ceeEeccCCCC
Confidence 357777777655555554444 667788777755444222 11223333111226777777777777 88888887654
Q ss_pred CeE--EeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEE
Q 038533 250 PVA--ELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIA 327 (337)
Q Consensus 250 ~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 327 (337)
+.- .+......-..+..+ +. ++..+..+ ...+-+...++... ...+....+.+.+.+-+.+.+....
T Consensus 290 pfl~ss~~t~g~~a~gi~ay--~~-y~yiadkn-~g~vV~~s~~s~m~-------~~~g~~ti~~s~~v~~~~q~~y~~d 358 (370)
T COG5276 290 PFLSSSLDTAGYQAAGIRAY--GN-YNYIADKN-TGAVVDASPPSMMD-------KRPGRPTIGQSCDVSVDTQIIYSTD 358 (370)
T ss_pred CchhccccCCCccccceEEe--cC-eeEeccCC-ceEEEeCCChhhcc-------cccCcceEeeecceEEEeeEEEEee
Confidence 421 111111122333333 22 44444433 44455555222110 1111111233333333444566777
Q ss_pred cCCcEEEEe
Q 038533 328 FSNKMQLLK 336 (337)
Q Consensus 328 ~d~~i~iw~ 336 (337)
.++.+.||+
T Consensus 359 ~~~gl~i~~ 367 (370)
T COG5276 359 YNGGLSIIE 367 (370)
T ss_pred cCCCEEEEE
Confidence 888888886
No 409
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.75 E-value=0.85 Score=36.92 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=85.2
Q ss_pred CeeEEEeecCCCCeEEEee---CCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEE-CCCCCC
Q 038533 128 PLTSFDWNEIEPKRIGTCS---IDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFD-LRDKEH 202 (337)
Q Consensus 128 ~i~~~~~~~~~~~~l~~~~---~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd-~~~~~~ 202 (337)
.+.+.++++ +++.++... ....+.++.. +....... ....+..-.|+ ++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688899998 887766655 3334555543 33222221 22367778888 555555556566666663 333332
Q ss_pred ceeeecCCCCCCCceEEEeecCCCcEEEEEEec--CCEEEEEECCCC--C------CCeEEeecccceeeEEEeCCCCCC
Q 038533 203 STIIYESPQPDTPLLRLAWNKQDLRYMATILMD--SNKVVILDIRSP--T------LPVAELERHRACVNAIAWAPQSRR 272 (337)
Q Consensus 203 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--~~~i~i~d~~~~--~------~~~~~~~~~~~~v~~~~~~~~~~~ 272 (337)
.............|..+.++| +|..++....+ +.+|.+--+... + .+..........+..+.|.+++.
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~- 178 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST- 178 (253)
T ss_pred eeEEecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE-
Confidence 222222212222899999999 99888877632 223666544321 1 12222223345789999999998
Q ss_pred eEEEEcCCC
Q 038533 273 HICSVGDDS 281 (337)
Q Consensus 273 ~l~~~~~dg 281 (337)
+++.+...+
T Consensus 179 L~V~~~~~~ 187 (253)
T PF10647_consen 179 LVVLGRSAG 187 (253)
T ss_pred EEEEeCCCC
Confidence 665555433
No 410
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.62 E-value=0.054 Score=29.65 Aligned_cols=32 Identities=6% Similarity=0.037 Sum_probs=26.9
Q ss_pred CCeeEEEeecCCC--CeEEEeeCCCcEEEEeCCC
Q 038533 127 APLTSFDWNEIEP--KRIGTCSIDTTCTIWDIEK 158 (337)
Q Consensus 127 ~~i~~~~~~~~~~--~~l~~~~~dg~i~v~d~~~ 158 (337)
+.|.++.|+|..+ ++|+.+-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3588999998555 6899888899999999985
No 411
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.23 Score=42.52 Aligned_cols=142 Identities=11% Similarity=0.123 Sum_probs=89.8
Q ss_pred eeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCC--
Q 038533 172 VYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTL-- 249 (337)
Q Consensus 172 v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~-- 249 (337)
-+.+-|+|.+..+.+...|.+.-|-.........+......+++|.++.|++ |.+.+++--.+.. |.+++......
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~-v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKT-VDFCNFIPDNSQL 102 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCce-EEEEecCCCchhh
Confidence 4556677555555555567777777765543222222223567999999999 9999999888887 99998854221
Q ss_pred -CeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceE
Q 038533 250 -PVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWL 324 (337)
Q Consensus 250 -~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 324 (337)
...+.+.....|....|+.+.+ +|..+.. .+.+|... ...+ .......|...|+-..|.++.+.++
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s~e--~A~i~~~-G~e~y~v~--pekr----slRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSSTE--IAFITDQ-GIEFYQVL--PEKR----SLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred HHHHHhccCcceeEEEEEecCee--EEEEecC-CeEEEEEc--hhhh----hhhhhhhcccCccEEEEccccceEe
Confidence 1112223344688999998754 6655533 36777766 2111 1334456777888889998876443
No 412
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.54 E-value=0.89 Score=41.66 Aligned_cols=175 Identities=11% Similarity=0.170 Sum_probs=88.8
Q ss_pred CCcEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCc
Q 038533 148 DTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLR 227 (337)
Q Consensus 148 dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 227 (337)
--.|+|++. +|+.+..+.-..+.+..+.|++...|+....+|++.+|++-.................|..+.+.. +|-
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-~GV 140 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-NGV 140 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEec-Cce
Confidence 356899997 677776665455588899999888899999999999999876543331111111233455555543 444
Q ss_pred EEEEEEecCCEEEEEECCCCCCCeEEeec---ccceeeEEEeCCCCC--CeEEEEc-CCCcEEEEeCCCCCCCCCCCCCc
Q 038533 228 YMATILMDSNKVVILDIRSPTLPVAELER---HRACVNAIAWAPQSR--RHICSVG-DDSQAFIWELPLPPVAGPNGIDP 301 (337)
Q Consensus 228 ~l~~~~~d~~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~--~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~ 301 (337)
.+++. ++..+.+-+...+ .+.++.. ...+-++-...+++. ..++-.. ..+ ..++... ... ...
T Consensus 141 avlt~--~g~v~~i~~~~~~--~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~--~~~----~q~ 209 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEEP--KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVE--ESR----VQL 209 (829)
T ss_pred EEEec--CCcEEEEcCCCcc--hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hccccee--ccc----ccc
Confidence 44443 3331334333321 1122211 111112222222211 0111111 111 1122222 100 011
Q ss_pred eeeeeCCCceeEEEEccCCCceEEEEcCCcEEEE
Q 038533 302 MSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLL 335 (337)
Q Consensus 302 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 335 (337)
..+......+..+..||+.++|+.-..+|.+.+-
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~v 243 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVV 243 (829)
T ss_pred cccCCCCceEEEEEEcCCcceEEEEecCCcEEEE
Confidence 1122224568888999998888887888877664
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.51 E-value=0.085 Score=28.91 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=23.8
Q ss_pred CCceEEEeecCCC--cEEEEEEecCCEEEEEECCC
Q 038533 214 TPLLRLAWNKQDL--RYMATILMDSNKVVILDIRS 246 (337)
Q Consensus 214 ~~i~~~~~~~~~~--~~l~~~~~d~~~i~i~d~~~ 246 (337)
+.+.++.|+|..+ .+|+.+-..+. |.++|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence 3678999998444 56666555555 99999995
No 414
>PHA02790 Kelch-like protein; Provisional
Probab=95.34 E-value=2 Score=38.56 Aligned_cols=177 Identities=9% Similarity=-0.033 Sum_probs=86.0
Q ss_pred EEEEeC-C------eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCC--CcEEEEeCCCcc--c
Q 038533 93 LLASSG-D------FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSID--TTCTIWDIEKGV--V 161 (337)
Q Consensus 93 ~l~~~~-~------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d--g~i~v~d~~~~~--~ 161 (337)
+++.|| + .+..||..++.......+.... .....+.. ++.+.+.|+.+ ..+..||..+++ .
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r-----~~~~~v~~---~~~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPR-----LYASGVPA---NNKLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchh-----hcceEEEE---CCEEEEECCcCCCCceEEEECCCCeEEE
Confidence 666665 1 5677888776543433333221 11222222 67888888864 357888876553 2
Q ss_pred hhhhhccCCceeEEEeCCCcEEEEEcCCC---eEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCE
Q 038533 162 ETQLIAHDKEVYDICWGEARVFASVSADG---SVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNK 238 (337)
Q Consensus 162 ~~~~~~~~~~v~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~ 238 (337)
+..+..... -.+++..++++.+.|+.++ .+..||.++.+-.... ..+........+.+ ++.+.+.|+ .
T Consensus 346 ~~~l~~~r~-~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~-~m~~~r~~~~~~~~---~~~IYv~GG---~- 416 (480)
T PHA02790 346 MPSLLKPRC-NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGP-STYYPHYKSCALVF---GRRLFLVGR---N- 416 (480)
T ss_pred CCCCCCCCc-ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCC-CCCCccccceEEEE---CCEEEEECC---c-
Confidence 222221111 1122333678888887654 4678888766532211 11011111122222 566666653 4
Q ss_pred EEEEECCCCC-CCeEEeecccceeeEEEeCCCCCCeEEEEcCC-----CcEEEEeCC
Q 038533 239 VVILDIRSPT-LPVAELERHRACVNAIAWAPQSRRHICSVGDD-----SQAFIWELP 289 (337)
Q Consensus 239 i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~iw~~~ 289 (337)
+.+||.++.. ..+..+.........+.+ +++ +.+.|+.+ ..+..||..
T Consensus 417 ~e~ydp~~~~W~~~~~m~~~r~~~~~~v~--~~~-IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 417 AEFYCESSNTWTLIDDPIYPRDNPELIIV--DNK-LLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred eEEecCCCCcEeEcCCCCCCccccEEEEE--CCE-EEEECCcCCCcccceEEEEECC
Confidence 7788887632 111112111112222222 455 77777754 245566665
No 415
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.30 E-value=1.5 Score=36.73 Aligned_cols=164 Identities=8% Similarity=0.055 Sum_probs=84.7
Q ss_pred ceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCC-eEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCC
Q 038533 32 QRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPP-TKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDS 109 (337)
Q Consensus 32 ~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i-~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~ 109 (337)
+.+.+-+. ||.+.-..++...............-.+++ ..-++...+. .++...-. .|+--|+...
T Consensus 148 ~~F~~lC~----DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~--------~~~F~Sy~G~v~~~dlsg~ 215 (342)
T PF06433_consen 148 RGFSMLCG----DGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG--------RLYFVSYEGNVYSADLSGD 215 (342)
T ss_dssp TEEEEEET----TSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT--------EEEEEBTTSEEEEEEETTS
T ss_pred CceEEEec----CCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC--------eEEEEecCCEEEEEeccCC
Confidence 44444443 999999999876655432111111112222 2223333222 24444443 7777777665
Q ss_pred CccceeeecCCC-----CCcccCCeeEEEeecCCCCeEEEee-------CCC--cEEEEeCCCccchhhhhccCCceeEE
Q 038533 110 SIEPVAVLNNSK-----SSEFCAPLTSFDWNEIEPKRIGTCS-------IDT--TCTIWDIEKGVVETQLIAHDKEVYDI 175 (337)
Q Consensus 110 ~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~l~~~~-------~dg--~i~v~d~~~~~~~~~~~~~~~~v~~~ 175 (337)
..+....+.--. ..-..+.-.-+++++..+.+++... .|+ .|.++|+.+++.+..+.. ..++.+|
T Consensus 216 ~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si 294 (342)
T PF06433_consen 216 SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSI 294 (342)
T ss_dssp SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEE
T ss_pred cccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceE
Confidence 433333322111 0001133445778773333333321 111 588889999998888873 3468889
Q ss_pred EeC-C-CcEEEEE-cCCCeEEEEECCCCCCceeeec
Q 038533 176 CWG-E-ARVFASV-SADGSVRIFDLRDKEHSTIIYE 208 (337)
Q Consensus 176 ~~~-~-~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~ 208 (337)
..+ + .-+|++. ..++.+.+||..+++....+..
T Consensus 295 ~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 295 AVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 998 4 3355444 5689999999999986666543
No 416
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.17 E-value=1.8 Score=40.63 Aligned_cols=74 Identities=14% Similarity=0.255 Sum_probs=52.3
Q ss_pred CCCceEEEeecCCCcEEEEEEecCCEEEEEECCCC-C---------C--CeEEe--------ecccceeeEEEeCCCC--
Q 038533 213 DTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP-T---------L--PVAEL--------ERHRACVNAIAWAPQS-- 270 (337)
Q Consensus 213 ~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~-~---------~--~~~~~--------~~~~~~v~~~~~~~~~-- 270 (337)
.-.|..+.++| +|.+++..|..+ |.|..+... + . ..+++ ..+...|..+.|+|.+
T Consensus 84 ~f~v~~i~~n~-~g~~lal~G~~~--v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNP-TGSLLALVGPRG--VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECC-CCCEEEEEcCCc--EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 35788999999 999999988866 666655321 0 0 01111 1234578999999975
Q ss_pred CCeEEEEcCCCcEEEEeCC
Q 038533 271 RRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 271 ~~~l~~~~~dg~i~iw~~~ 289 (337)
...|+.-..|+.+|+||+.
T Consensus 161 ~~~l~vLtsdn~lR~y~~~ 179 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDIS 179 (717)
T ss_pred CCeEEEEecCCEEEEEecC
Confidence 2378888889999999998
No 417
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.03 E-value=0.68 Score=42.29 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=69.2
Q ss_pred eeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh-ccCCceeEEEeC---CCcEEEEEcCCCeEEEEECCCC----
Q 038533 129 LTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI-AHDKEVYDICWG---EARVFASVSADGSVRIFDLRDK---- 200 (337)
Q Consensus 129 i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~v~~~~~~---~~~~l~~~~~dg~i~iwd~~~~---- 200 (337)
+.-+.-+. -++..++-+....+.|||.+.+.....-. ...+.|.++.|. +++.+++.+....|.+|--...
T Consensus 32 ~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 32 PSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred cceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 33444443 34444444445679999998876433222 346789999999 5888888888999999865211
Q ss_pred -----CCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCC
Q 038533 201 -----EHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRS 246 (337)
Q Consensus 201 -----~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~ 246 (337)
.....+........+|.+..|.+ +|.+++.+ .+ ++.|+|-.-
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~-~G~LvV~s-GN--qlfv~dk~~ 157 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLK-DGTLVVGS-GN--QLFVFDKWL 157 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEec-CCeEEEEe-CC--EEEEECCCc
Confidence 11122211112235788999987 66555543 22 389987643
No 418
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=0.68 Score=39.85 Aligned_cols=107 Identities=13% Similarity=0.217 Sum_probs=74.9
Q ss_pred cCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCcee-eecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECC
Q 038533 168 HDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTI-IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIR 245 (337)
Q Consensus 168 ~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~ 245 (337)
..++|.++.|+ |.+.+++--.+.+|.+++....+.... ..+.+.....|....|.. ..-++.....| +.+|-..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G--~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--STEIAFITDQG--IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--CeeEEEEecCC--eEEEEEc
Confidence 45699999999 888899999999999999854432111 112222345689999984 46677666665 7777766
Q ss_pred CCCCCeEEeecccceeeEEEeCCCCCCeEEEEc
Q 038533 246 SPTLPVAELERHRACVNAIAWAPQSRRHICSVG 278 (337)
Q Consensus 246 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 278 (337)
...+.++..+.|...|+-..|+++..-.|++.+
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 555566777778888888999998773333333
No 419
>PRK13684 Ycf48-like protein; Provisional
Probab=94.77 E-value=2.3 Score=36.13 Aligned_cols=152 Identities=9% Similarity=0.035 Sum_probs=78.4
Q ss_pred CCeeEEEeecCCCCeEEEeeCCCcEEEE-eCCCccchhh-hhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCc
Q 038533 127 APLTSFDWNEIEPKRIGTCSIDTTCTIW-DIEKGVVETQ-LIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHS 203 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~-d~~~~~~~~~-~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 203 (337)
..+.++.+.| ++.+++++ ..|.+..- |- .++.... .......++++.+. ++..++ ++..|.+.+=....+..-
T Consensus 173 g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~-vg~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 173 GVVRNLRRSP-DGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWM-LARGGQIRFNDPDDLESW 248 (334)
T ss_pred ceEEEEEECC-CCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEE-EecCCEEEEccCCCCCcc
Confidence 5688899988 76666555 45655432 21 2221111 12334578888888 455444 455677653223333211
Q ss_pred eeeecC-CCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEee---cccceeeEEEeCCCCCCeEEEEcC
Q 038533 204 TIIYES-PQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELE---RHRACVNAIAWAPQSRRHICSVGD 279 (337)
Q Consensus 204 ~~~~~~-~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~ 279 (337)
...... ......+..+.+.| ++..++ ++.+|. +. ..... ++.-.... .-......+.|..++. .++ .+.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~-v~-~S~d~-G~tW~~~~~~~~~~~~~~~~~~~~~~~-~~~-~G~ 321 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRT-PGEIWA-GGGNGT-LL-VSKDG-GKTWEKDPVGEEVPSNFYKIVFLDPEK-GFV-LGQ 321 (334)
T ss_pred ccccCCccccccceeeEEEcC-CCCEEE-EcCCCe-EE-EeCCC-CCCCeECCcCCCCCcceEEEEEeCCCc-eEE-ECC
Confidence 111111 01124578888987 666554 455664 33 33322 32222222 1123577788877766 554 555
Q ss_pred CCcEEEEeCC
Q 038533 280 DSQAFIWELP 289 (337)
Q Consensus 280 dg~i~iw~~~ 289 (337)
.|.|.-|+-.
T Consensus 322 ~G~il~~~~~ 331 (334)
T PRK13684 322 RGVLLRYVGS 331 (334)
T ss_pred CceEEEecCC
Confidence 7888776544
No 420
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.76 E-value=0.94 Score=32.07 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=61.6
Q ss_pred CccceeeeeCCCceeEEEEe-------cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCC
Q 038533 11 RSENSVTHESPYPLYAMAVC-------GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSS 83 (337)
Q Consensus 11 ~~~~~~~~~~~~~v~~~~~s-------~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 83 (337)
+..++..+.-...|++++-. .+.|+.|+ ...+..||.......+.. +-++.|+++.+-.-+.
T Consensus 37 ~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-----~t~llaYDV~~N~d~Fyk------e~~DGvn~i~~g~~~~ 105 (136)
T PF14781_consen 37 QDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-----QTSLLAYDVENNSDLFYK------EVPDGVNAIVIGKLGD 105 (136)
T ss_pred ccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-----cceEEEEEcccCchhhhh------hCccceeEEEEEecCC
Confidence 45567777888888888765 57899999 799999999988877764 5567788888743221
Q ss_pred cccCcCCccEEEEeCC-eEEEEecCCC
Q 038533 84 SRKSSSNRHLLASSGD-FLRLWDVGDS 109 (337)
Q Consensus 84 ~~~~~~~~~~l~~~~~-~v~vw~~~~~ 109 (337)
....++..|++ .|.-||.+..
T Consensus 106 -----~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 106 -----IPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred -----CCCcEEEECceEEEEEeCCCCc
Confidence 11137888888 9999988776
No 421
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=94.74 E-value=2.4 Score=36.28 Aligned_cols=188 Identities=11% Similarity=0.050 Sum_probs=98.5
Q ss_pred CCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-----CCcE--EEEEc-CC---CeEEEEECCCCCC-cee
Q 038533 138 EPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-----EARV--FASVS-AD---GSVRIFDLRDKEH-STI 205 (337)
Q Consensus 138 ~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-----~~~~--l~~~~-~d---g~i~iwd~~~~~~-~~~ 205 (337)
...+++...+++-+.+||+. |+.+..+. .+.++.+..- .++. |+.++ .+ .+|++|.+..... ...
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 45688888889999999995 55555553 2344444332 2332 33333 32 4699997764221 111
Q ss_pred eecC----CCCCCCceEEEe--ecCCCc-EEEEEEecCCEEEEEECCCCC------CCeEEeecccceeeEEEeCCCCCC
Q 038533 206 IYES----PQPDTPLLRLAW--NKQDLR-YMATILMDSNKVVILDIRSPT------LPVAELERHRACVNAIAWAPQSRR 272 (337)
Q Consensus 206 ~~~~----~~~~~~i~~~~~--~~~~~~-~l~~~~~d~~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~ 272 (337)
+... ......++.+|+ +|.++. ++++...+|. +..|-+...+ ++++++.. ...+..+.......
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~-~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g- 220 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGR-VEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETG- 220 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSE-EEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTT-
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCce-EEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccC-
Confidence 1110 011134566666 444555 4455555655 7777665222 24555653 34677888887777
Q ss_pred eEEEEcCCCcEEEEeCCCCCCCCCCCCCceee-e----eCCCceeEEEEcc--CC-CceEEEE-cCCcEEEEe
Q 038533 273 HICSVGDDSQAFIWELPLPPVAGPNGIDPMSM-Y----SAGSEINQLQWSP--AQ-PDWLAIA-FSNKMQLLK 336 (337)
Q Consensus 273 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~----~~~~~v~~~~~~~--~~-~~l~~~~-~d~~i~iw~ 336 (337)
.|+.+-++.-|.-|+.+..... ....+ . .....|-.|+.-. ++ .+|++++ .+++..||+
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~-----~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGN-----DRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S-------EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred CEEEecCccEEEEEecCCCCCC-----cceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 8999999887777777622211 11111 1 1234577777643 33 3677666 567888886
No 422
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.65 E-value=0.29 Score=42.00 Aligned_cols=158 Identities=13% Similarity=0.118 Sum_probs=92.7
Q ss_pred CCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCee-EEEeecCCCCeEEEeeCC
Q 038533 71 YPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLT-SFDWNEIEPKRIGTCSID 148 (337)
Q Consensus 71 ~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~~~~~d 148 (337)
..+..+-..|+++ .|..-++ .+.++++.+...+..+...... .+....|+ .+..-. .+.-+++++.|
T Consensus 221 ~~v~qllL~Pdg~---------~LYv~~g~~~~v~~L~~r~l~~rkl~~dsp-g~~~~~Vte~l~lL~-Gg~SLLv~~~d 289 (733)
T COG4590 221 SDVSQLLLTPDGK---------TLYVRTGSELVVALLDKRSLQIRKLVDDSP-GDSRHQVTEQLYLLS-GGFSLLVVHED 289 (733)
T ss_pred cchHhhEECCCCC---------EEEEecCCeEEEEeecccccchhhhhhcCC-CchHHHHHHHHHHHh-CceeEEEEcCC
Confidence 4566777888988 7777665 8888888876543333222211 11112233 222222 56778888999
Q ss_pred CcEEEE-eCCCcc-----chhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEe
Q 038533 149 TTCTIW-DIEKGV-----VETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAW 221 (337)
Q Consensus 149 g~i~v~-d~~~~~-----~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~ 221 (337)
|.|.-| |.+.+. .++.++-...++..+.-. ..+-+++-+..|++.++.....+...... .-....-+++
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~----~~~~~~~~~~ 365 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER----AYQAPQLVAM 365 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh----hhcCcceeee
Confidence 999888 554332 122222222334333333 35668888889999888765554222211 1135667899
Q ss_pred ecCCCcEEEEEEecCCEEEEEECCC
Q 038533 222 NKQDLRYMATILMDSNKVVILDIRS 246 (337)
Q Consensus 222 ~~~~~~~l~~~~~d~~~i~i~d~~~ 246 (337)
+| ++.++++- |++.++++.+.+
T Consensus 366 Sp-~~~~Ll~e--~~gki~~~~l~N 387 (733)
T COG4590 366 SP-NQAYLLSE--DQGKIRLAQLEN 387 (733)
T ss_pred Cc-ccchheee--cCCceEEEEecC
Confidence 99 88888764 333399998887
No 423
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.64 E-value=0.41 Score=41.75 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=86.4
Q ss_pred CCCe-EEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeCC---------CcEEEEEcCCCeEEEEECCCCCCceeee
Q 038533 138 EPKR-IGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGE---------ARVFASVSADGSVRIFDLRDKEHSTIIY 207 (337)
Q Consensus 138 ~~~~-l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~---------~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 207 (337)
+.++ +..|+.-..++-.|++.|+.+.....|... -+.|.| ...| .|-.+..|.-.|.|.........
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceeee
Confidence 4444 444556667888889999888887766654 355543 3334 44445556556766443211111
Q ss_pred cCC--CCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEE
Q 038533 208 ESP--QPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFI 285 (337)
Q Consensus 208 ~~~--~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i 285 (337)
... .......+..- ....++++++..|- |++||.-. ......+++....|..+..+.+|+++|+|| ...+.+
T Consensus 555 esKdY~tKn~Fss~~t--TesGyIa~as~kGD-irLyDRig-~rAKtalP~lG~aIk~idvta~Gk~ilaTC--k~yllL 628 (776)
T COG5167 555 ESKDYKTKNKFSSGMT--TESGYIAAASRKGD-IRLYDRIG-KRAKTALPGLGDAIKHIDVTANGKHILATC--KNYLLL 628 (776)
T ss_pred eehhcccccccccccc--ccCceEEEecCCCc-eeeehhhc-chhhhcCcccccceeeeEeecCCcEEEEee--cceEEE
Confidence 110 11112222221 25679999999998 99999653 333344566677899999999999666666 356777
Q ss_pred EeCC
Q 038533 286 WELP 289 (337)
Q Consensus 286 w~~~ 289 (337)
-|++
T Consensus 629 ~d~~ 632 (776)
T COG5167 629 TDVP 632 (776)
T ss_pred Eecc
Confidence 7775
No 424
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=1.6 Score=33.51 Aligned_cols=174 Identities=14% Similarity=0.148 Sum_probs=90.7
Q ss_pred EEEEeC--C--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhcc
Q 038533 93 LLASSG--D--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAH 168 (337)
Q Consensus 93 ~l~~~~--~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~ 168 (337)
++.+.+ + .|++||+.+++......+.. ...+...++.+ .....+-.-.+|.-..+|.++.+++..+. .
T Consensus 58 i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y 129 (262)
T COG3823 58 ILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRFS-Y 129 (262)
T ss_pred EEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeec-----cceEEEEEeccceeEEEChHHhhhhcccc-c
Confidence 777665 2 99999999885433333331 12222334332 22333334578899999998888777665 4
Q ss_pred CCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeee---cCCCCCCCceEEEeecCCCcEEEEEEec----------
Q 038533 169 DKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIY---ESPQPDTPLLRLAWNKQDLRYMATILMD---------- 235 (337)
Q Consensus 169 ~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~~~d---------- 235 (337)
++.-..++-.+ ..|+.++...+++.-|..+-.....+. .. ..-..++-+.|- +|...+-.=.+
T Consensus 130 ~GeGWgLt~d~-~~LimsdGsatL~frdP~tfa~~~~v~VT~~g-~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~s 205 (262)
T COG3823 130 EGEGWGLTSDD-KNLIMSDGSATLQFRDPKTFAELDTVQVTDDG-VPVSKLNELEWV--DGELYANVWQTTRIARIDPDS 205 (262)
T ss_pred CCcceeeecCC-cceEeeCCceEEEecCHHHhhhcceEEEEECC-eecccccceeee--ccEEEEeeeeecceEEEcCCC
Confidence 45556666653 346666556678777776543322221 11 011223334442 33333322222
Q ss_pred CCEEEEEECCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEc
Q 038533 236 SNKVVILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVG 278 (337)
Q Consensus 236 ~~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 278 (337)
|..+...|+......+..-..|..-.+.+++.|++..+++||-
T Consensus 206 GrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 206 GRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred CcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 2212223333211111122234556788999999864777764
No 425
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.49 E-value=1.7 Score=33.61 Aligned_cols=157 Identities=14% Similarity=0.227 Sum_probs=85.4
Q ss_pred eEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC-----EEEEE---EC
Q 038533 173 YDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN-----KVVIL---DI 244 (337)
Q Consensus 173 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~-----~i~i~---d~ 244 (337)
..++-...+.|+.+...+.|.+|++......... .. ..-+.+..+.++. .|+|+++--.+.. .+++| +.
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~-~F-~Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLC-TF-STVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeE-EE-cchhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhh
Confidence 3444443244544466788999999944433222 22 1237899999998 8999999765443 24554 22
Q ss_pred C-CCCCCeE-Eeecc---------------------cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCC----
Q 038533 245 R-SPTLPVA-ELERH---------------------RACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPN---- 297 (337)
Q Consensus 245 ~-~~~~~~~-~~~~~---------------------~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~---- 297 (337)
. ....++. .+.+| ..++.+++..|-.. -|+.|+ ++++.+|.+.......+.
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG-~LlVg~-~~~l~lf~l~~~~~~~~~~~~l 175 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTG-NLLVGC-GNKLVLFTLKYQTIQSEKFSFL 175 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCC-CEEEEc-CCEEEEEEEEEEEEecccccEE
Confidence 2 1112222 12221 33667888888655 466666 568899988743321100
Q ss_pred CCCceeeeeC-CCceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 298 GIDPMSMYSA-GSEINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 298 ~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
......+.-| .-.+..+++..+ .++..++-.+++++|
T Consensus 176 DFe~~l~~~~~~~~p~~v~ic~~---yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 176 DFERSLIDHIDNFKPTQVAICEG---YIAVMSDLEVLVLKL 213 (215)
T ss_pred echhhhhheecCceEEEEEEEee---EEEEecCCEEEEEEE
Confidence 0000011111 223566677644 456666777777764
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.42 E-value=3 Score=35.98 Aligned_cols=144 Identities=7% Similarity=-0.058 Sum_probs=75.3
Q ss_pred CeeEEEeecCCCCeEEEee-----------CCC-cEEEEeCCC--ccc--hhhhhccCCceeEEEeCCCcEEEEEcCCCe
Q 038533 128 PLTSFDWNEIEPKRIGTCS-----------IDT-TCTIWDIEK--GVV--ETQLIAHDKEVYDICWGEARVFASVSADGS 191 (337)
Q Consensus 128 ~i~~~~~~~~~~~~l~~~~-----------~dg-~i~v~d~~~--~~~--~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~ 191 (337)
....|+|.+ +++++++-. ..+ .|.+++-.+ ++. ...+.........+++.++. ++++.....
T Consensus 15 ~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 15 NPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 455789988 888777642 223 677776433 221 22332233345788888444 444555443
Q ss_pred EEEEECCCCC----Cceeeec-CCC----CCCCceEEEeecCCCcEEEEEEec-------------------CCEEEEEE
Q 038533 192 VRIFDLRDKE----HSTIIYE-SPQ----PDTPLLRLAWNKQDLRYMATILMD-------------------SNKVVILD 243 (337)
Q Consensus 192 i~iwd~~~~~----~~~~~~~-~~~----~~~~i~~~~~~~~~~~~l~~~~~d-------------------~~~i~i~d 243 (337)
.++.|..... ....+.. ... +......+.|.| ++.+.++.+.. +. |.-+|
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~-i~r~~ 170 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGG-LFRYN 170 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCce-EEEEe
Confidence 3444554321 1122222 111 123467899999 87766654421 22 44444
Q ss_pred CCCCCCCeEEeecccceeeEEEeCCCCCCeEEEEc
Q 038533 244 IRSPTLPVAELERHRACVNAIAWAPQSRRHICSVG 278 (337)
Q Consensus 244 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 278 (337)
... ..+..+...-.....++|+|+|. ++++-.
T Consensus 171 pdg--~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn 202 (367)
T TIGR02604 171 PDG--GKLRVVAHGFQNPYGHSVDSWGD-VFFCDN 202 (367)
T ss_pred cCC--CeEEEEecCcCCCccceECCCCC-EEEEcc
Confidence 443 22333322223457899999998 666544
No 427
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.16 E-value=2.2 Score=33.48 Aligned_cols=101 Identities=13% Similarity=0.155 Sum_probs=65.8
Q ss_pred eeEEEeecCCCC-eEEEeeCCCcEEEEe--CCCccc-----hhhhhc---c-CCceeEEEeC-CCcEEEEEcCCCeEEEE
Q 038533 129 LTSFDWNEIEPK-RIGTCSIDTTCTIWD--IEKGVV-----ETQLIA---H-DKEVYDICWG-EARVFASVSADGSVRIF 195 (337)
Q Consensus 129 i~~~~~~~~~~~-~l~~~~~dg~i~v~d--~~~~~~-----~~~~~~---~-~~~v~~~~~~-~~~~l~~~~~dg~i~iw 195 (337)
-..++|+. +.+ +.++-+.+-+|.-|| ..+|.. +..++. . .-..-.++.. +|++.+++-..++|...
T Consensus 160 sNgl~Wd~-d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDS-DAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKV 238 (310)
T ss_pred Cccccccc-cCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEE
Confidence 34788986 544 455556677887787 556542 111111 1 1112345556 78999999999999999
Q ss_pred ECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEE
Q 038533 196 DLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATIL 233 (337)
Q Consensus 196 d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~ 233 (337)
|..+++....+... ...+++++|--.+-..|++.+
T Consensus 239 dp~tGK~L~eiklP---t~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 239 DPTTGKILLEIKLP---TPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCCcEEEEEEcC---CCceEEEEecCCCccEEEEEe
Confidence 99999977666543 578999999654445555543
No 428
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.14 E-value=2.4 Score=41.66 Aligned_cols=150 Identities=13% Similarity=0.117 Sum_probs=86.3
Q ss_pred cceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCc-cceeeecCC-
Q 038533 44 TNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSI-EPVAVLNNS- 120 (337)
Q Consensus 44 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~-~~~~~~~~~- 120 (337)
|+.+.+|+++..+..... .+....|..+..-.-....+-+...++|+.+.- .|.++-+.-.+. .....+..+
T Consensus 98 Dn~L~lWny~~~~e~~~~-----d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 98 DNNLFLWNYESDNELAEY-----DGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred CCeEEEEEcCCCCccccc-----cchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Confidence 899999999985543333 455566777665443333333444467777775 666665543210 011111111
Q ss_pred CCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEE--eCCCc---c-----------------chhhhh-ccCCceeEEEe
Q 038533 121 KSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIW--DIEKG---V-----------------VETQLI-AHDKEVYDICW 177 (337)
Q Consensus 121 ~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~--d~~~~---~-----------------~~~~~~-~~~~~v~~~~~ 177 (337)
+-......|.|+.... +|+.+++|- ||.|+-. ....+ + .+..+. .+.++|..++.
T Consensus 173 ~i~~dg~~V~~I~~t~-nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTE-NGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI 250 (1311)
T ss_pred eeecCCceEEEEEecc-CCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence 0000015688888654 777777664 5544321 11111 0 011122 45678999999
Q ss_pred C-CCcEEEEEcCCCeEEEEECCCC
Q 038533 178 G-EARVFASVSADGSVRIFDLRDK 200 (337)
Q Consensus 178 ~-~~~~l~~~~~dg~i~iwd~~~~ 200 (337)
. ..+.+.+-+..|+|.+||+...
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred ccccceeeeeccCceEEEEEccCC
Confidence 9 6778889999999999999873
No 429
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.08 E-value=3.6 Score=35.68 Aligned_cols=102 Identities=14% Similarity=0.178 Sum_probs=50.2
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeec--CCCCeEEEeeCCCcEEEEeC-CCcc----c-----------
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNE--IEPKRIGTCSIDTTCTIWDI-EKGV----V----------- 161 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~l~~~~~dg~i~v~d~-~~~~----~----------- 161 (337)
++.+||+.+. +.++++.-... ......+.|.. ....-++.+....+|..|-- +.++ .
T Consensus 223 ~l~vWD~~~r--~~~Q~idLg~~---g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~ 297 (461)
T PF05694_consen 223 SLHVWDWSTR--KLLQTIDLGEE---GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG 297 (461)
T ss_dssp EEEEEETTTT--EEEEEEES-TT---EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred eEEEEECCCC--cEeeEEecCCC---CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence 7999999999 55555554220 03455676643 12223444444555555533 3332 1
Q ss_pred ------hhhhhccCCceeEEEeC-CCcEEEE-EcCCCeEEEEECCCCCCceee
Q 038533 162 ------ETQLIAHDKEVYDICWG-EARVFAS-VSADGSVRIFDLRDKEHSTII 206 (337)
Q Consensus 162 ------~~~~~~~~~~v~~~~~~-~~~~l~~-~~~dg~i~iwd~~~~~~~~~~ 206 (337)
++.+..-..-|+++..+ ++++|.. +-..|.|+.||+.....++..
T Consensus 298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~ 350 (461)
T PF05694_consen 298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLV 350 (461)
T ss_dssp S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEE
T ss_pred ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEE
Confidence 11112224557899999 7776665 456899999999987766554
No 430
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.00 E-value=1.4 Score=38.34 Aligned_cols=77 Identities=10% Similarity=0.120 Sum_probs=56.2
Q ss_pred CCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC----C-C-----------------cEEE
Q 038533 127 APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG----E-A-----------------RVFA 184 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~----~-~-----------------~~l~ 184 (337)
..+.++..+| .+++.++...-|.|.++|+.++..++..++..+.- +.|. + . -+++
T Consensus 308 R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 308 REGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred ceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEEEEE
Confidence 4588999999 89999999899999999999999888888655431 1111 1 1 1344
Q ss_pred EEcCCCeEEEEECCCCCCceee
Q 038533 185 SVSADGSVRIFDLRDKEHSTII 206 (337)
Q Consensus 185 ~~~~dg~i~iwd~~~~~~~~~~ 206 (337)
.+-.-|.|.+|.++.+.....+
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEE
Confidence 5666788999999888754443
No 431
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.63 E-value=4.3 Score=35.00 Aligned_cols=143 Identities=10% Similarity=0.105 Sum_probs=74.7
Q ss_pred CCCeEEEecCCCCcccCcCCccEEEEeC--------------CeEEEEecCC--CCccceeeecCCCCCcccCCeeEEEe
Q 038533 71 YPPTKLMFDPNSSSRKSSSNRHLLASSG--------------DFLRLWDVGD--SSIEPVAVLNNSKSSEFCAPLTSFDW 134 (337)
Q Consensus 71 ~~i~~i~~~~~~~~~~~~~~~~~l~~~~--------------~~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~ 134 (337)
.....|+|.++++ ++++.. +.|.+++-.+ +.......+...- .....+++
T Consensus 14 ~~P~~ia~d~~G~---------l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l-----~~p~Gi~~ 79 (367)
T TIGR02604 14 RNPIAVCFDERGR---------LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL-----SMVTGLAV 79 (367)
T ss_pred CCCceeeECCCCC---------EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC-----CCccceeE
Confidence 4467899999998 777641 2566665432 2222233443322 44578888
Q ss_pred ecCCCCeEEEeeCCCcEEEEeCCCc-----c---chhhhhc----cCCceeEEEeC-CCcEEEEEcCC------------
Q 038533 135 NEIEPKRIGTCSIDTTCTIWDIEKG-----V---VETQLIA----HDKEVYDICWG-EARVFASVSAD------------ 189 (337)
Q Consensus 135 ~~~~~~~l~~~~~dg~i~v~d~~~~-----~---~~~~~~~----~~~~v~~~~~~-~~~~l~~~~~d------------ 189 (337)
.+ ++ ++++ ......++.|.... + .+..+.. +......++|. ++.+.++.+..
T Consensus 80 ~~-~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~ 156 (367)
T TIGR02604 80 AV-GG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSD 156 (367)
T ss_pred ec-CC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCcc
Confidence 87 66 5544 44433334454321 1 1112221 12346788888 56655544421
Q ss_pred -------CeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEec
Q 038533 190 -------GSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMD 235 (337)
Q Consensus 190 -------g~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d 235 (337)
|.|.-+|....+. .+... . -.....++|+| +++++++-..+
T Consensus 157 ~~~~~~~g~i~r~~pdg~~~--e~~a~-G-~rnp~Gl~~d~-~G~l~~tdn~~ 204 (367)
T TIGR02604 157 ESRQGLGGGLFRYNPDGGKL--RVVAH-G-FQNPYGHSVDS-WGDVFFCDNDD 204 (367)
T ss_pred CcccccCceEEEEecCCCeE--EEEec-C-cCCCccceECC-CCCEEEEccCC
Confidence 3455555554432 12211 1 23457899998 88887764433
No 432
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.49 E-value=3.4 Score=33.35 Aligned_cols=193 Identities=11% Similarity=0.021 Sum_probs=102.6
Q ss_pred cceeeeeCCC--ceeEEEE-e-cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCc
Q 038533 13 ENSVTHESPY--PLYAMAV-C-GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSS 88 (337)
Q Consensus 13 ~~~~~~~~~~--~v~~~~~-s-~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~ 88 (337)
+.+.+++|+. -.-.+.| . +.++-+.+. -....|+.++++........ . .+...-=-.+....+.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~--yG~S~l~~~d~~tg~~~~~~--~--l~~~~FgEGit~~~d~------ 101 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGL--YGQSSLRKVDLETGKVLQSV--P--LPPRYFGEGITILGDK------ 101 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECS--TTEEEEEEEETTTSSEEEEE--E---TTT--EEEEEEETTE------
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCC--CCcEEEEEEECCCCcEEEEE--E--CCccccceeEEEECCE------
Confidence 4556677743 3456777 4 444444443 12345666655543322221 1 1222112234444332
Q ss_pred CCccEEEEeC-C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh
Q 038533 89 SNRHLLASSG-D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI 166 (337)
Q Consensus 89 ~~~~~l~~~~-~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 166 (337)
+..-.- + ...+||..+- +.+.++.-. ..=..++. +++.|+.......|+.+|.++.+....+.
T Consensus 102 ----l~qLTWk~~~~f~yd~~tl--~~~~~~~y~------~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 102 ----LYQLTWKEGTGFVYDPNTL--KKIGTFPYP------GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp ----EEEEESSSSEEEEEETTTT--EEEEEEE-S------SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred ----EEEEEecCCeEEEEccccc--eEEEEEecC------CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEE
Confidence 433333 3 8889999876 555555432 33456663 66777777767889999988776555444
Q ss_pred cc-----CCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeec--------C----CCCCCCceEEEeecCCCcEE
Q 038533 167 AH-----DKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYE--------S----PQPDTPLLRLAWNKQDLRYM 229 (337)
Q Consensus 167 ~~-----~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~----~~~~~~i~~~~~~~~~~~~l 229 (337)
-. -..++.+.|.++...|=.=....|...|..+++....+.. . .....-.+.++++|..+.++
T Consensus 167 V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~ 246 (264)
T PF05096_consen 167 VTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLF 246 (264)
T ss_dssp -EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEE
T ss_pred EEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEE
Confidence 21 2346777777777777777777888888888875443310 0 01135689999999666666
Q ss_pred EEE
Q 038533 230 ATI 232 (337)
Q Consensus 230 ~~~ 232 (337)
++|
T Consensus 247 vTG 249 (264)
T PF05096_consen 247 VTG 249 (264)
T ss_dssp EEE
T ss_pred EEe
Confidence 665
No 433
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.41 E-value=7.9 Score=37.39 Aligned_cols=178 Identities=12% Similarity=0.065 Sum_probs=99.9
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCC-eEEEee-----------CCCcEEEEeCCC-ccchhhhh
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPK-RIGTCS-----------IDTTCTIWDIEK-GVVETQLI 166 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~l~~~~-----------~dg~i~v~d~~~-~~~~~~~~ 166 (337)
.|++.|..++...+...+... +-.-.+..+.|+..+.. ++++|. .+|.++.|++-. ++.+.-+.
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~n---e~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh 930 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQN---EAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH 930 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCC---cchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee
Confidence 488888887743333333322 11135667777763333 333332 234466666432 33221111
Q ss_pred --ccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEEC
Q 038533 167 --AHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDI 244 (337)
Q Consensus 167 --~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~ 244 (337)
.-.+.+.+++-..+ +++ ++....+++||+...+..+..... .-...|..+++ .+..+++|....+ +.++-.
T Consensus 931 ~T~~~~~v~Ai~~f~~-~~L-agvG~~l~~YdlG~K~lLRk~e~k-~~p~~Is~iqt---~~~RI~VgD~qeS-V~~~~y 1003 (1205)
T KOG1898|consen 931 KTEIPGPVGAICPFQG-RVL-AGVGRFLRLYDLGKKKLLRKCELK-FIPNRISSIQT---YGARIVVGDIQES-VHFVRY 1003 (1205)
T ss_pred ccCCCccceEEeccCC-EEE-EecccEEEEeeCChHHHHhhhhhc-cCceEEEEEee---cceEEEEeeccce-EEEEEE
Confidence 23345555554334 333 334578999999887644333222 12456777877 6678888887777 777766
Q ss_pred CCCCCCeEEeecc--cceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 245 RSPTLPVAELERH--RACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 245 ~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
+.....+..+... ...|+++.+-..+ -+|.+..-|.+.+-.+.
T Consensus 1004 ~~~~n~l~~fadD~~pR~Vt~~~~lD~~--tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1004 RREDNQLIVFADDPVPRHVTALELLDYD--TVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred ecCCCeEEEEeCCCccceeeEEEEecCC--ceeeccccCcEEEEECC
Confidence 6545445555332 3467777666555 47888777888777765
No 434
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.33 E-value=0.28 Score=45.67 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=45.6
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecC--CCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEe
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEI--EPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICW 177 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~ 177 (337)
.+.||++.--+-+....+.-|-...+...+.-+.|.|. +.-++..+..++++++....+.. ...+.+|...+..++|
T Consensus 154 ~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~ 232 (1283)
T KOG1916|consen 154 ELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAF 232 (1283)
T ss_pred hhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHHH
Confidence 66778775321122222222211111144455666553 45678888889999998875543 3556678888888877
Q ss_pred C
Q 038533 178 G 178 (337)
Q Consensus 178 ~ 178 (337)
-
T Consensus 233 ~ 233 (1283)
T KOG1916|consen 233 F 233 (1283)
T ss_pred H
Confidence 6
No 435
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.96 E-value=0.0098 Score=50.88 Aligned_cols=142 Identities=15% Similarity=0.187 Sum_probs=92.7
Q ss_pred eEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEE-ecCCEEEEEECCCCCCC
Q 038533 173 YDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATIL-MDSNKVVILDIRSPTLP 250 (337)
Q Consensus 173 ~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~-~d~~~i~i~d~~~~~~~ 250 (337)
....|- .+.-++.++.+..+..||-........ ...+....++|+. ++..+++.. ..+. +++||+.+....
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~le~-----n~tg~aldm~wDk-egdvlavlAek~~p-iylwd~n~eytq 110 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVILEL-----NPTGKALDMAWDK-EGDVLAVLAEKTGP-IYLWDVNSEYTQ 110 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcceeccc-----CCchhHhhhhhcc-ccchhhhhhhcCCC-eeechhhhhhHH
Confidence 344555 455588888888899999765542222 1345677888988 666655544 4455 999999863321
Q ss_pred eEEeecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCC
Q 038533 251 VAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSN 330 (337)
Q Consensus 251 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 330 (337)
.-.+.+ ...-.-+.|++..+ .++.+...|.+.|++.. ... .......|..++++++|.+.+ +.+.++.|.
T Consensus 111 qLE~gg-~~s~sll~wsKg~~-el~ig~~~gn~viynhg--tsR-----~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~ 180 (615)
T KOG2247|consen 111 QLESGG-TSSKSLLAWSKGTP-ELVIGNNAGNIVIYNHG--TSR-----RIIVMGKHQRRGTQIAVTLED-YVILCDCDN 180 (615)
T ss_pred HHhccC-cchHHHHhhccCCc-cccccccccceEEEecc--chh-----hhhhhcccccceeEEEecccc-eeeecCcHH
Confidence 111211 11222278999888 89999999999999998 322 234444588999999999987 456555554
Q ss_pred c
Q 038533 331 K 331 (337)
Q Consensus 331 ~ 331 (337)
.
T Consensus 181 ~ 181 (615)
T KOG2247|consen 181 T 181 (615)
T ss_pred H
Confidence 3
No 436
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=92.93 E-value=5.1 Score=39.19 Aligned_cols=163 Identities=15% Similarity=0.119 Sum_probs=93.6
Q ss_pred eeeeCCCceeEEEEe-----------cceEEEeee-eccC----cceEEEEEecC---CCc----ceecCCCcCCCCCCC
Q 038533 16 VTHESPYPLYAMAVC-----------GQRIAVGSF-IEDY----TNRVDVVSFEP---ESL----SIKTHPSLSFDHPYP 72 (337)
Q Consensus 16 ~~~~~~~~v~~~~~s-----------~~~la~g~~-~~~~----d~~i~i~~~~~---~~~----~~~~~~~~~~~~~~~ 72 (337)
+.++...-|.+++.. ..+||+|+. .+++ .|.+.|+++-. +.+ ..+.+.....+..++
T Consensus 1020 iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGt 1099 (1366)
T KOG1896|consen 1020 IEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGT 1099 (1366)
T ss_pred cccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccc
Confidence 344444556676665 478999887 2333 68999998642 222 111111223456677
Q ss_pred CeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecC-CCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCc
Q 038533 73 PTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVG-DSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTT 150 (337)
Q Consensus 73 i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~ 150 (337)
|..++=. +| .|+++.+ .|.||+++ ..+...+.-+.- ++.-..... -.++|+.|.--..
T Consensus 1100 VsavceV-~G----------~l~~~~GqKI~v~~l~r~~~ligVaFiD~--------~~yv~s~~~-vknlIl~gDV~ks 1159 (1366)
T KOG1896|consen 1100 VSAVCEV-RG----------HLLSSQGQKIIVRKLDRDSELIGVAFIDL--------PLYVHSMKV-VKNLILAGDVMKS 1159 (1366)
T ss_pred eEEEEEe-cc----------EEEEccCcEEEEEEeccCCcceeeEEecc--------ceeEEehhh-hhhheehhhhhhc
Confidence 8777632 33 6777776 99999994 443333333222 222233322 4577888877777
Q ss_pred EEEEeCCCccc-hhhhh--ccCCceeEEEeC-CC--cEEEEEcCCCeEEEEECC
Q 038533 151 CTIWDIEKGVV-ETQLI--AHDKEVYDICWG-EA--RVFASVSADGSVRIFDLR 198 (337)
Q Consensus 151 i~v~d~~~~~~-~~~~~--~~~~~v~~~~~~-~~--~~l~~~~~dg~i~iwd~~ 198 (337)
|.+.-....-. +..+. ...-.++++.|- +| -.++++..++.|++|-..
T Consensus 1160 isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1160 ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred eEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 77766543321 11111 123357778887 53 367888899999987654
No 437
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.81 E-value=6.1 Score=34.47 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=58.7
Q ss_pred EEEecCCCCcccCcCCccEEEEeCC-eE----EEEecCC-C--CccceeeecCCCCCcccCCeeEEEeecC---------
Q 038533 75 KLMFDPNSSSRKSSSNRHLLASSGD-FL----RLWDVGD-S--SIEPVAVLNNSKSSEFCAPLTSFDWNEI--------- 137 (337)
Q Consensus 75 ~i~~~~~~~~~~~~~~~~~l~~~~~-~v----~vw~~~~-~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------- 137 (337)
.++.+|++. +||.+.+ .+ .-|+... + .........+.-..+....|+++.|-|.
T Consensus 6 ~isls~~~d---------~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~ 76 (415)
T PF14655_consen 6 SISLSPDGD---------LLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGG 76 (415)
T ss_pred eEEecCCCC---------EEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCC
Confidence 467889998 8888864 22 2354322 1 1112222222111111135666665542
Q ss_pred -CCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC
Q 038533 138 -EPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG 178 (337)
Q Consensus 138 -~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~ 178 (337)
+...+++|..+|.|++|.. +|..+..-.-|.++|..+...
T Consensus 77 ~dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 77 PDWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred CCcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 3578999999999999995 777777767789999998886
No 438
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.79 E-value=1.9 Score=40.04 Aligned_cols=117 Identities=13% Similarity=0.112 Sum_probs=72.1
Q ss_pred CCceeEEEEe----cceEEEeeeeccCcceEEEEEecC-------C-------CcceecCCCcCCCCCCCCeEEEec--C
Q 038533 21 PYPLYAMAVC----GQRIAVGSFIEDYTNRVDVVSFEP-------E-------SLSIKTHPSLSFDHPYPPTKLMFD--P 80 (337)
Q Consensus 21 ~~~v~~~~~s----~~~la~g~~~~~~d~~i~i~~~~~-------~-------~~~~~~~~~~~~~~~~~i~~i~~~--~ 80 (337)
+..|..|... ...|+++.. ||.|.+|..+. . .......+.+.......+++++++ .
T Consensus 100 PHtIN~i~v~~lg~~EVLl~c~D----dG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~ 175 (717)
T PF08728_consen 100 PHTINFIKVGDLGGEEVLLLCTD----DGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYK 175 (717)
T ss_pred CceeeEEEecccCCeeEEEEEec----CCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecC
Confidence 3456666666 677777775 99999997531 0 001111122334455678999998 6
Q ss_pred CCCcccCcCCccEEEEeCC--eEEEEecCC--CCccceeeecCCCCCcccCCeeEEEeecCC--CC---eEEEeeCCCcE
Q 038533 81 NSSSRKSSSNRHLLASSGD--FLRLWDVGD--SSIEPVAVLNNSKSSEFCAPLTSFDWNEIE--PK---RIGTCSIDTTC 151 (337)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~--~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~---~l~~~~~dg~i 151 (337)
..+ ++|++++ .|.||-... .+....... .+. ..|-+|+|-+.+ +. .+++++-.|.+
T Consensus 176 ~~r---------lIAVSsNs~~VTVFaf~l~~~r~~~~~s~-~~~-----hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v 240 (717)
T PF08728_consen 176 KSR---------LIAVSSNSQEVTVFAFALVDERFYHVPSH-QHS-----HNIPNVSFLDDDLDPNGHVKVVATDISGEV 240 (717)
T ss_pred cce---------EEEEecCCceEEEEEEecccccccccccc-ccc-----cCCCeeEeecCCCCCccceEEEEEeccCcE
Confidence 666 8998885 555554433 221111111 122 568899997733 22 78889999999
Q ss_pred EEEeC
Q 038533 152 TIWDI 156 (337)
Q Consensus 152 ~v~d~ 156 (337)
.+|++
T Consensus 241 ~~~~I 245 (717)
T PF08728_consen 241 WTFKI 245 (717)
T ss_pred EEEEE
Confidence 99887
No 439
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.78 E-value=2.1 Score=37.75 Aligned_cols=72 Identities=14% Similarity=0.254 Sum_probs=46.8
Q ss_pred CceEEEeecCCCcEEEEEEecCCEEEEEECCC-C--------CCCeE---E-------ee-cccceeeEEEeCCCC--CC
Q 038533 215 PLLRLAWNKQDLRYMATILMDSNKVVILDIRS-P--------TLPVA---E-------LE-RHRACVNAIAWAPQS--RR 272 (337)
Q Consensus 215 ~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~-~--------~~~~~---~-------~~-~~~~~v~~~~~~~~~--~~ 272 (337)
.|..+..++ .|..++..+.+| |.+..+.. . +++.- + +. ...-.+..++|+|+. ..
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~G--i~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKG--LMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEecC-CCceEEEecCCe--eEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence 456777788 889998888888 55544411 0 11110 0 00 011246778999987 44
Q ss_pred eEEEEcCCCcEEEEeCC
Q 038533 273 HICSVGDDSQAFIWELP 289 (337)
Q Consensus 273 ~l~~~~~dg~i~iw~~~ 289 (337)
.|..-+.|+.||+|++.
T Consensus 182 hL~iL~sdnviRiy~lS 198 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLS 198 (741)
T ss_pred eEEEEecCcEEEEEecC
Confidence 77788889999999998
No 440
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.68 E-value=1.2 Score=35.13 Aligned_cols=63 Identities=8% Similarity=0.221 Sum_probs=46.1
Q ss_pred CCcEEEEEEecCCEEEEEECCCCCCCeEE------ee-------cccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCC
Q 038533 225 DLRYMATILMDSNKVVILDIRSPTLPVAE------LE-------RHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPL 290 (337)
Q Consensus 225 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 290 (337)
.+.+|++.+.+|. +++||+.+.+..+.. +. .....|..+.++.+|. -+++-+ +|..+.|+.+.
T Consensus 21 ~~~~Ll~iT~~G~-l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGSYLLAITSSGL-LYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-PIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred CCCEEEEEeCCCe-EEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-EEEEEe-CCCEEEecccc
Confidence 7888999999998 999999985422221 11 2446788899998887 555554 67889998874
No 441
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.41 E-value=1.5 Score=38.67 Aligned_cols=75 Identities=15% Similarity=0.326 Sum_probs=47.7
Q ss_pred eeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCC----CCCCCce---------eee--eCCCceeEEEEccCC---C
Q 038533 260 CVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAG----PNGIDPM---------SMY--SAGSEINQLQWSPAQ---P 321 (337)
Q Consensus 260 ~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~----~~~~~~~---------~~~--~~~~~v~~~~~~~~~---~ 321 (337)
.|..+..++.|. .++-.+.+|.+.++=-+ ..++ .++.... .++ ...-.+...+|+|+. +
T Consensus 105 eV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~--rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 105 EVYQVLLSPTGS-HVALIGIKGLMVMELPK--RWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEecCCCc-eEEEecCCeeEEEEchh--hcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence 577888999999 77777778866554322 1110 0111111 111 122347889999975 6
Q ss_pred ceEEEEcCCcEEEEeC
Q 038533 322 DWLAIAFSNKMQLLKV 337 (337)
Q Consensus 322 ~l~~~~~d~~i~iw~l 337 (337)
.|+.-.+|+.+|+|++
T Consensus 182 hL~iL~sdnviRiy~l 197 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSL 197 (741)
T ss_pred eEEEEecCcEEEEEec
Confidence 7888899999999985
No 442
>PRK10115 protease 2; Provisional
Probab=92.38 E-value=10 Score=35.91 Aligned_cols=193 Identities=11% Similarity=0.108 Sum_probs=99.9
Q ss_pred CCCeEEEecCCCCcccCcCCccEEEEeC-----C--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEE
Q 038533 71 YPPTKLMFDPNSSSRKSSSNRHLLASSG-----D--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIG 143 (337)
Q Consensus 71 ~~i~~i~~~~~~~~~~~~~~~~~l~~~~-----~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 143 (337)
-.+..+.|+|+++ +|+.+. + .|++.|+.+++. ....+.+ .. ..++|.+ +++.|+
T Consensus 127 ~~l~~~~~Spdg~---------~la~~~d~~G~E~~~l~v~d~~tg~~-l~~~i~~-------~~-~~~~w~~-D~~~~~ 187 (686)
T PRK10115 127 YTLGGMAITPDNT---------IMALAEDFLSRRQYGIRFRNLETGNW-YPELLDN-------VE-PSFVWAN-DSWTFY 187 (686)
T ss_pred EEEeEEEECCCCC---------EEEEEecCCCcEEEEEEEEECCCCCC-CCccccC-------cc-eEEEEee-CCCEEE
Confidence 3466788999998 777653 2 799999988731 1222222 12 4589998 777665
Q ss_pred EeeCC------CcEEEEeCCCcc--chhhhhccCCcee-EEEeC-CCcEEEEEcC---CCeEEEEECCCCCC-ceeeecC
Q 038533 144 TCSID------TTCTIWDIEKGV--VETQLIAHDKEVY-DICWG-EARVFASVSA---DGSVRIFDLRDKEH-STIIYES 209 (337)
Q Consensus 144 ~~~~d------g~i~v~d~~~~~--~~~~~~~~~~~v~-~~~~~-~~~~l~~~~~---dg~i~iwd~~~~~~-~~~~~~~ 209 (337)
....+ ..|+.+++.++. ....+........ .+..+ ++++++..+. ++.+.+++...... ...+...
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR 267 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC
Confidence 55432 367778887773 2223332222232 22333 5665554333 45688888543211 1222211
Q ss_pred CCCCCCceEEEeecCCCcEEEEEEecC-C-EEEEEECCCCCCCeEEeecc-c-ceeeEEEeCCCCCCeEEEEcCCCcEEE
Q 038533 210 PQPDTPLLRLAWNKQDLRYMATILMDS-N-KVVILDIRSPTLPVAELERH-R-ACVNAIAWAPQSRRHICSVGDDSQAFI 285 (337)
Q Consensus 210 ~~~~~~i~~~~~~~~~~~~l~~~~~d~-~-~i~i~d~~~~~~~~~~~~~~-~-~~v~~~~~~~~~~~~l~~~~~dg~i~i 285 (337)
.......+. +. .+.+++....+. . .|...++..... ...+..+ . ..+..+.+..+ .++++...+|.-++
T Consensus 268 --~~~~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~--~l~~~~~~~g~~~l 340 (686)
T PRK10115 268 --RKDHEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQ-WEELIPPRENIMLEGFTLFTD--WLVVEERQRGLTSL 340 (686)
T ss_pred --CCCCEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCccc-CeEEECCCCCCEEEEEEEECC--EEEEEEEeCCEEEE
Confidence 112222222 22 333333332222 1 244445543222 2344444 2 36788888733 37777888887776
Q ss_pred EeCC
Q 038533 286 WELP 289 (337)
Q Consensus 286 w~~~ 289 (337)
+-++
T Consensus 341 ~~~~ 344 (686)
T PRK10115 341 RQIN 344 (686)
T ss_pred EEEc
Confidence 6655
No 443
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.32 E-value=6.7 Score=37.84 Aligned_cols=156 Identities=18% Similarity=0.180 Sum_probs=90.8
Q ss_pred ceeEEEEe---cc-eEEEeee-ecc------CcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCc
Q 038533 23 PLYAMAVC---GQ-RIAVGSF-IED------YTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNR 91 (337)
Q Consensus 23 ~v~~~~~s---~~-~la~g~~-~~~------~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 91 (337)
.+.++.|+ .. ++++|.. ... .+|.++.|++-.....+.. ....+-.+.|.+| +|...
T Consensus 879 ~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lel--lh~T~~~~~v~Ai--~~f~~-------- 946 (1205)
T KOG1898|consen 879 SVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLEL--LHKTEIPGPVGAI--CPFQG-------- 946 (1205)
T ss_pred heeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeee--eeccCCCccceEE--eccCC--------
Confidence 46777777 23 4555554 000 1455777777665554443 1112334445444 46555
Q ss_pred cEEEEeCCeEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCc-cchhhhh--cc
Q 038533 92 HLLASSGDFLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKG-VVETQLI--AH 168 (337)
Q Consensus 92 ~~l~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-~~~~~~~--~~ 168 (337)
.+|+..++.+++|++...++.....++.-. ..|+.+.+ .+..+++|...-.+.++.-+.. +.+..+- .-
T Consensus 947 ~~LagvG~~l~~YdlG~K~lLRk~e~k~~p-----~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~ 1018 (1205)
T KOG1898|consen 947 RVLAGVGRFLRLYDLGKKKLLRKCELKFIP-----NRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLIVFADDPV 1018 (1205)
T ss_pred EEEEecccEEEEeeCChHHHHhhhhhccCc-----eEEEEEee---cceEEEEeeccceEEEEEEecCCCeEEEEeCCCc
Confidence 356666669999999887543333333322 67888887 4578888877666665543322 2222222 22
Q ss_pred CCceeEEEeCCCcEEEEEcCCCeEEEEECC
Q 038533 169 DKEVYDICWGEARVFASVSADGSVRIFDLR 198 (337)
Q Consensus 169 ~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~ 198 (337)
...|+++.+-+...++.+..=|.+.+..+.
T Consensus 1019 pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1019 PRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred cceeeEEEEecCCceeeccccCcEEEEECC
Confidence 345777776677788888887877666554
No 444
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.27 E-value=0.023 Score=48.71 Aligned_cols=136 Identities=14% Similarity=0.172 Sum_probs=90.2
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC---CeEEEEecC
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG---DFLRLWDVG 107 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~---~~v~vw~~~ 107 (337)
+.-+++++. +..+..||-. +.... ...-++....++|..+++ .++... +.+.+|++.
T Consensus 46 ~~nlavaca----~tiv~~YD~a--gq~~l-----e~n~tg~aldm~wDkegd---------vlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 46 GHNLAVACA----NTIVIYYDKA--GQVIL-----ELNPTGKALDMAWDKEGD---------VLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred CCceehhhh----hhHHHhhhhh--cceec-----ccCCchhHhhhhhccccc---------hhhhhhhcCCCeeechhh
Confidence 444667664 6666665432 22222 134556677888988887 444433 399999998
Q ss_pred CCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeCCCcEEEEEc
Q 038533 108 DSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEARVFASVS 187 (337)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 187 (337)
+.....+..-..+. ... +.|++ ....++.+...|.+.+++..+.+.+-..-.|...++.++|...++.+.++
T Consensus 106 ~eytqqLE~gg~~s-----~sl--l~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 106 SEYTQQLESGGTSS-----KSL--LAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred hhhHHHHhccCcch-----HHH--Hhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 86322221111121 222 78888 78888889999999999988777666555588999999999777777777
Q ss_pred CCCeEEE
Q 038533 188 ADGSVRI 194 (337)
Q Consensus 188 ~dg~i~i 194 (337)
.|..+.+
T Consensus 178 cd~~L~v 184 (615)
T KOG2247|consen 178 CDNTLSV 184 (615)
T ss_pred cHHHHHH
Confidence 7765544
No 445
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.21 E-value=7.9 Score=34.29 Aligned_cols=138 Identities=13% Similarity=0.112 Sum_probs=80.5
Q ss_pred EEEEeC-C--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecC------CCCeEEEeeCCCcEEEEeCCCcc-ch
Q 038533 93 LLASSG-D--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEI------EPKRIGTCSIDTTCTIWDIEKGV-VE 162 (337)
Q Consensus 93 ~l~~~~-~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~l~~~~~dg~i~v~d~~~~~-~~ 162 (337)
++..-+ . .+.-.|+..+ +.+.....|. .+ -+.|.|. ....-++|-.+..|.-.|.+-.. .+
T Consensus 481 li~~dg~~~~kLykmDIErG--kvveeW~~~d------dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 481 LIYLDGGERDKLYKMDIERG--KVVEEWDLKD------DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred eEEecCCCcccceeeecccc--eeeeEeecCC------cc-eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence 555544 3 7777788888 5666666553 33 4667662 11233444455666666765332 11
Q ss_pred hh--hh--ccCCceeEEEeCCCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCE
Q 038533 163 TQ--LI--AHDKEVYDICWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNK 238 (337)
Q Consensus 163 ~~--~~--~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~ 238 (337)
.. .+ .......+..-....+++.++..|-|++||--..+....+ ++-...|..+.... +|.++++.+.. .
T Consensus 552 ~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtal---P~lG~aIk~idvta-~Gk~ilaTCk~-y- 625 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTAL---PGLGDAIKHIDVTA-NGKHILATCKN-Y- 625 (776)
T ss_pred eeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcC---cccccceeeeEeec-CCcEEEEeecc-e-
Confidence 11 11 1112233333335679999999999999996544422222 22346788888887 88888776654 3
Q ss_pred EEEEECC
Q 038533 239 VVILDIR 245 (337)
Q Consensus 239 i~i~d~~ 245 (337)
+.+-|++
T Consensus 626 llL~d~~ 632 (776)
T COG5167 626 LLLTDVP 632 (776)
T ss_pred EEEEecc
Confidence 7777765
No 446
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.75 E-value=0.25 Score=45.99 Aligned_cols=136 Identities=11% Similarity=0.128 Sum_probs=77.7
Q ss_pred CCcEEEEeCCCcc-chhhhhccCCceeEEEeC--CCcEEEEEcCCCeEEEEECCC--CCCceee--ecCCCCCCCceEEE
Q 038533 148 DTTCTIWDIEKGV-VETQLIAHDKEVYDICWG--EARVFASVSADGSVRIFDLRD--KEHSTII--YESPQPDTPLLRLA 220 (337)
Q Consensus 148 dg~i~v~d~~~~~-~~~~~~~~~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~--~~~~~~~--~~~~~~~~~i~~~~ 220 (337)
.+-+++-+..+.- ....+++..+.+-.+.|- +...+. -.-|.+.+||+.- ++....+ .........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 4567777655432 123456777888888887 322222 3446788998763 3222111 11111234456677
Q ss_pred eecC--CCcEEEEEEecCCEEEEEECCCCCCCeEEeecccceeeEE-----------EeCCCCCCeEEEEcCCCcEEEEe
Q 038533 221 WNKQ--DLRYMATILMDSNKVVILDIRSPTLPVAELERHRACVNAI-----------AWAPQSRRHICSVGDDSQAFIWE 287 (337)
Q Consensus 221 ~~~~--~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~~l~~~~~dg~i~iw~ 287 (337)
|+|. +.-++-.+-.++. +++....... ...+.+|...+..+ ..+|||. .++.+..||.+++|.
T Consensus 188 wcp~~~~~~~ic~~~~~~~-i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGE-IRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQ 263 (1283)
T ss_pred ecccccccceeeeccCCCc-eeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceee
Confidence 7763 3333434444444 7776665422 23445565544433 3689999 999999999999998
Q ss_pred CC
Q 038533 288 LP 289 (337)
Q Consensus 288 ~~ 289 (337)
+.
T Consensus 264 iy 265 (1283)
T KOG1916|consen 264 IY 265 (1283)
T ss_pred ee
Confidence 86
No 447
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.66 E-value=2.9 Score=31.53 Aligned_cols=31 Identities=13% Similarity=0.443 Sum_probs=25.2
Q ss_pred CceeEEEeCC-------CcEEEEEcCCCeEEEEECCCC
Q 038533 170 KEVYDICWGE-------ARVFASVSADGSVRIFDLRDK 200 (337)
Q Consensus 170 ~~v~~~~~~~-------~~~l~~~~~dg~i~iwd~~~~ 200 (337)
..+.+++|+| .-+|++.+.++.|.+|.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 4789999994 347889999999999987643
No 448
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.53 E-value=0.79 Score=24.44 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=20.9
Q ss_pred ccceeeEEEeCCCCCCeEEEEcCC--CcEEEE
Q 038533 257 HRACVNAIAWAPQSRRHICSVGDD--SQAFIW 286 (337)
Q Consensus 257 ~~~~v~~~~~~~~~~~~l~~~~~d--g~i~iw 286 (337)
....-....|+|+|+.++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567789999999666677677 776666
No 449
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.48 E-value=3.8 Score=29.13 Aligned_cols=117 Identities=10% Similarity=-0.028 Sum_probs=64.8
Q ss_pred EEEe--cceEEEeeeeccCcceEEEEEecCCCccee--cCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC-eE
Q 038533 27 MAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIK--THPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FL 101 (337)
Q Consensus 27 ~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v 101 (337)
-.|. ...|++++. .|+|.|++......... ........-...|++|+--+-.. ......|..|+. .+
T Consensus 4 GkfDG~~pcL~~aT~----~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~----~~~~D~LliGt~t~l 75 (136)
T PF14781_consen 4 GKFDGVHPCLACATT----GGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKP----DDGRDCLLIGTQTSL 75 (136)
T ss_pred EEeCCCceeEEEEec----CCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCC----CCCcCEEEEeccceE
Confidence 3455 456777776 89999976553321110 00001134566788876544211 112358899987 99
Q ss_pred EEEecCCCCccceeeecCCCCCcccCCeeEEEeecC---CCCeEEEeeCCCcEEEEeCCCcc
Q 038533 102 RLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEI---EPKRIGTCSIDTTCTIWDIEKGV 160 (337)
Q Consensus 102 ~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~dg~i~v~d~~~~~ 160 (337)
..||+....-...+.++ ..|.++.+-.. ...++++|+ +..|.-||.+..+
T Consensus 76 laYDV~~N~d~Fyke~~--------DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e 128 (136)
T PF14781_consen 76 LAYDVENNSDLFYKEVP--------DGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNE 128 (136)
T ss_pred EEEEcccCchhhhhhCc--------cceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcE
Confidence 99999887422222222 45666665321 234555554 5677777764433
No 450
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.03 E-value=1.4 Score=34.67 Aligned_cols=69 Identities=10% Similarity=0.186 Sum_probs=44.2
Q ss_pred eCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCC-CCCceeee------eCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 266 WAPQSRRHICSVGDDSQAFIWELPLPPVAGPN-GIDPMSMY------SAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
+..++. +|++.+.+|.+++||+...+..-+. ...++... .....|..+..+.+|.-+++-+ +|....|+
T Consensus 18 l~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 334566 8999999999999999943322111 11111111 3566789999998886555544 56677775
No 451
>PLN02153 epithiospecifier protein
Probab=90.57 E-value=9.9 Score=32.35 Aligned_cols=148 Identities=12% Similarity=0.079 Sum_probs=69.7
Q ss_pred EEEEeC-C------eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCC-----------CcEEEE
Q 038533 93 LLASSG-D------FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSID-----------TTCTIW 154 (337)
Q Consensus 93 ~l~~~~-~------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d-----------g~i~v~ 154 (337)
+++.|+ + .+.+||..+.+...+..+....... ...-.+++.. ++++++.|+.+ ..+.+|
T Consensus 88 iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~-~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 88 LYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPE-ARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred EEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCC-CceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEE
Confidence 666665 1 5778898877544333321100000 0111122222 56777777754 247788
Q ss_pred eCCCccch--hhhh-c-cCCceeEEEeCCCcEEEEEcCC-------------CeEEEEECCCCCCceeeec--CCCCCCC
Q 038533 155 DIEKGVVE--TQLI-A-HDKEVYDICWGEARVFASVSAD-------------GSVRIFDLRDKEHSTIIYE--SPQPDTP 215 (337)
Q Consensus 155 d~~~~~~~--~~~~-~-~~~~v~~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~~~~~~--~~~~~~~ 215 (337)
|.++.+-. .... . ....-.+++..++++++.++.+ ..+.+||+.+.+-...... .+.....
T Consensus 165 d~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~ 244 (341)
T PLN02153 165 NIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSV 244 (341)
T ss_pred ECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcce
Confidence 98765421 1111 0 0111112222256666655432 3588899887764332211 1111111
Q ss_pred ceEEEeecCCCcEEEEEEecC-------------CEEEEEECCC
Q 038533 216 LLRLAWNKQDLRYMATILMDS-------------NKVVILDIRS 246 (337)
Q Consensus 216 i~~~~~~~~~~~~l~~~~~d~-------------~~i~i~d~~~ 246 (337)
...+.+ ++.+++.|+... ..+..||+.+
T Consensus 245 ~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~ 285 (341)
T PLN02153 245 FAHAVV---GKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET 285 (341)
T ss_pred eeeEEE---CCEEEEECcccCCccccccccccccccEEEEEcCc
Confidence 222222 567777777420 1277888765
No 452
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.51 E-value=2.4 Score=32.06 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=25.4
Q ss_pred eeeEEEeCCCCC-----CeEEEEcCCCcEEEEeCC
Q 038533 260 CVNAIAWAPQSR-----RHICSVGDDSQAFIWELP 289 (337)
Q Consensus 260 ~v~~~~~~~~~~-----~~l~~~~~dg~i~iw~~~ 289 (337)
.+.+++|||.|- -+|++.+.+|.|.||.-.
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 688999999542 279999999999999887
No 453
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=90.48 E-value=11 Score=32.52 Aligned_cols=203 Identities=11% Similarity=0.124 Sum_probs=106.1
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecC----CCCcccCcCCccEEEEeC------Ce
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDP----NSSSRKSSSNRHLLASSG------DF 100 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~----~~~~~~~~~~~~~l~~~~------~~ 100 (337)
.+-++.|+. .++-+.+|+++........ .+.++.+..-- .++ . .-||.++ ++
T Consensus 67 ~kSlIigTd---K~~GL~VYdL~Gk~lq~~~--------~Gr~NNVDvrygf~l~g~------~-vDlavas~R~~g~n~ 128 (381)
T PF02333_consen 67 AKSLIIGTD---KKGGLYVYDLDGKELQSLP--------VGRPNNVDVRYGFPLNGK------T-VDLAVASDRSDGRNS 128 (381)
T ss_dssp GG-EEEEEE---TTTEEEEEETTS-EEEEE---------SS-EEEEEEEEEEEETTE------E-EEEEEEEE-CCCT-E
T ss_pred ccceEEEEe---CCCCEEEEcCCCcEEEeec--------CCCcceeeeecceecCCc------e-EEEEEEecCcCCCCe
Confidence 455666664 4788999888765433321 13344433321 222 0 1133332 16
Q ss_pred EEEEecCCCCccceeeecCCCC---CcccCCeeEEEe--ecCCCC-eEEEeeCCCcEEEEeCCC---c----cchhhhhc
Q 038533 101 LRLWDVGDSSIEPVAVLNNSKS---SEFCAPLTSFDW--NEIEPK-RIGTCSIDTTCTIWDIEK---G----VVETQLIA 167 (337)
Q Consensus 101 v~vw~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~--~~~~~~-~l~~~~~dg~i~v~d~~~---~----~~~~~~~~ 167 (337)
|++|.+.... ..+..+..... ... ..+..+++ ++.++. ++++...+|.+..|.+.. + +.++.|..
T Consensus 129 l~~f~id~~~-g~L~~v~~~~~p~~~~~-~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 129 LRLFRIDPDT-GELTDVTDPAAPIATDL-SEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp EEEEEEETTT-TEEEE-CBTTC-EE-SS-SSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred EEEEEecCCC-CcceEcCCCCccccccc-ccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 9999886432 12222221110 011 34566665 343343 667778899998887752 2 24566653
Q ss_pred cCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCC--Cceeee--cCCCCCCCceEEEeec--CCCcEEEEEEecCCEEE
Q 038533 168 HDKEVYDICWG-EARVFASVSADGSVRIFDLRDKE--HSTIIY--ESPQPDTPLLRLAWNK--QDLRYMATILMDSNKVV 240 (337)
Q Consensus 168 ~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~--~~~~~~~~i~~~~~~~--~~~~~l~~~~~d~~~i~ 240 (337)
...+..+... ....|+.+-++.-|.-|+.+... ....+. ........+..+++-. ....||++++....+..
T Consensus 207 -~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~ 285 (381)
T PF02333_consen 207 -GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFA 285 (381)
T ss_dssp -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred -CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence 4578888888 57789999999888888887332 222221 1212335666777643 12346766666555599
Q ss_pred EEECCCCCCCeEEe
Q 038533 241 ILDIRSPTLPVAEL 254 (337)
Q Consensus 241 i~d~~~~~~~~~~~ 254 (337)
+||.+.+...+..+
T Consensus 286 Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 286 VYDREGPNAYVGSF 299 (381)
T ss_dssp EEESSTT--EEEEE
T ss_pred EEecCCCCcccceE
Confidence 99988644444444
No 454
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.37 E-value=7.5 Score=31.96 Aligned_cols=98 Identities=12% Similarity=0.159 Sum_probs=58.8
Q ss_pred CcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEc------CCCeEEEEECCCCCCceeeecC-CCCCCCceEEE
Q 038533 149 TTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVS------ADGSVRIFDLRDKEHSTIIYES-PQPDTPLLRLA 220 (337)
Q Consensus 149 g~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~-~~~~~~i~~~~ 220 (337)
..|++||..+.+-...-.+-.+.|+++.|. ..++++.|. ....+..||+.+.......... ..-.+++..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 468999987766443333456789999998 556666553 3567889999887632222211 12246788888
Q ss_pred eecCCCcEEE-EEE-ecCC-EEEEEECCC
Q 038533 221 WNKQDLRYMA-TIL-MDSN-KVVILDIRS 246 (337)
Q Consensus 221 ~~~~~~~~l~-~~~-~d~~-~i~i~d~~~ 246 (337)
+...+...+. .|. .++. .|..||-.+
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCCc
Confidence 7654554444 333 2222 377776543
No 455
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.36 E-value=14 Score=33.71 Aligned_cols=192 Identities=7% Similarity=0.013 Sum_probs=101.3
Q ss_pred EEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCe-------eEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhh
Q 038533 93 LLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPL-------TSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQ 164 (337)
Q Consensus 93 ~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~ 164 (337)
+++++.+ .|.-+|..++ +.+..+........ ... ..+++ .+..++.++.|+.+.-.|.++|+.+-.
T Consensus 72 vyv~s~~g~v~AlDa~TG--k~lW~~~~~~~~~~-~~~~~~~~~~rg~av---~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 72 MYVTTSYSRVYALDAKTG--KELWKYDPKLPDDV-IPVMCCDVVNRGVAL---YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred EEEECCCCcEEEEECCCC--ceeeEecCCCCccc-ccccccccccccceE---ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 5555445 8888898888 44444332110000 010 11222 235677788899999999999997655
Q ss_pred hhcc--C--CceeE-EEeCCCcEEEEEc------CCCeEEEEECCCCCCceeeecCCCC---------------------
Q 038533 165 LIAH--D--KEVYD-ICWGEARVFASVS------ADGSVRIFDLRDKEHSTIIYESPQP--------------------- 212 (337)
Q Consensus 165 ~~~~--~--~~v~~-~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~--------------------- 212 (337)
.... . ..+.+ -... +..++.+. .+|.|..+|.++++..-.....+..
T Consensus 146 ~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 4321 1 01111 1111 33455543 2689999999988754333222111
Q ss_pred -------C-CCceEEEeecCCCcEEEEEEec-----C----------CEEEEEECCCCCCCeEEeecccc---------e
Q 038533 213 -------D-TPLLRLAWNKQDLRYMATILMD-----S----------NKVVILDIRSPTLPVAELERHRA---------C 260 (337)
Q Consensus 213 -------~-~~i~~~~~~~~~~~~l~~~~~d-----~----------~~i~i~d~~~~~~~~~~~~~~~~---------~ 260 (337)
. ..-..+++.| ...+++.+..+ + ..|.-.|+++ ++..-.++.... .
T Consensus 225 ~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T-G~~~W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT-GKIKWHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc-CCEEEeeeCCCCCCccccCCCC
Confidence 0 0112346666 45555555432 1 1266667777 444444432111 1
Q ss_pred eeEEEeCCCCC--CeEEEEcCCCcEEEEeCCCCCC
Q 038533 261 VNAIAWAPQSR--RHICSVGDDSQAFIWELPLPPV 293 (337)
Q Consensus 261 v~~~~~~~~~~--~~l~~~~~dg~i~iw~~~~~~~ 293 (337)
..-+....+|+ .+++.+..+|.+.+.|...++.
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 11222223443 3788999999999999985553
No 456
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=90.12 E-value=10 Score=35.52 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=43.0
Q ss_pred eEEEeCCCCCCeEEEEcCCC-----cEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCCCceEEEEcCCcEEEEe
Q 038533 262 NAIAWAPQSRRHICSVGDDS-----QAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLK 336 (337)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw~ 336 (337)
..+.|-|+|. .+++-+.|| .+.++..+ .+.. |+ .-.-.+....+..++|+-.. .+++.+..+.+++|-
T Consensus 250 ~~LSWkpqgS-~~ati~td~~~~S~~ViFfErN--GLrH--Ge-f~lr~~~dEk~~~~~wn~~s-~vlav~~~n~~~lwt 322 (1243)
T COG5290 250 HQLSWKPQGS-KYATIGTDGCSTSESVIFFERN--GLRH--GE-FDLRVGCDEKAFLENWNLLS-TVLAVAEGNLLKLWT 322 (1243)
T ss_pred hccccccCCc-eeeeeccCCCCCcceEEEEccC--Cccc--CC-ccccCCchhhhhhhhhhHHH-HHHHHhhcceEEEEE
Confidence 4589999999 999988665 36666655 3221 11 11223345556777887665 355666777888873
No 457
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=89.90 E-value=17 Score=34.07 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=68.2
Q ss_pred CCcEEEEEEecCCEEEEEECCC-------C------------CCCeEEeecccceeeEEEeC--CCCCCeEEEEcCCCcE
Q 038533 225 DLRYMATILMDSNKVVILDIRS-------P------------TLPVAELERHRACVNAIAWA--PQSRRHICSVGDDSQA 283 (337)
Q Consensus 225 ~~~~l~~~~~d~~~i~i~d~~~-------~------------~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i 283 (337)
+...|+++..||. |.+|.+.. . -+|...+.. ...++.++++ ...+ +||+++....|
T Consensus 113 ~~EVLl~c~DdG~-V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~r-lIAVSsNs~~V 189 (717)
T PF08728_consen 113 GEEVLLLCTDDGD-VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSR-LIAVSSNSQEV 189 (717)
T ss_pred CeeEEEEEecCCe-EEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcce-EEEEecCCceE
Confidence 4567778888888 99996521 0 012223332 3478899998 7676 89999888889
Q ss_pred EEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccCC---C---ceEEEEcCCcEEEEeC
Q 038533 284 FIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPAQ---P---DWLAIAFSNKMQLLKV 337 (337)
Q Consensus 284 ~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~d~~i~iw~l 337 (337)
.||-........ . ......+...|.+++|-++. . .+++++-.|.+.+|++
T Consensus 190 TVFaf~l~~~r~--~--~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDERF--Y--HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEecccccc--c--cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 998777321111 0 11122356679999998864 1 4566777898888764
No 458
>PRK13684 Ycf48-like protein; Provisional
Probab=89.65 E-value=12 Score=31.84 Aligned_cols=273 Identities=8% Similarity=-0.017 Sum_probs=128.1
Q ss_pred eCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEE
Q 038533 19 ESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLAS 96 (337)
Q Consensus 19 ~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~ 96 (337)
....++++++|. .+-+|+|. ++.|.. -.......+....-......++.++.|.++ . .+++
T Consensus 43 ~~~~~l~~v~F~d~~~g~avG~-----~G~il~--T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~---------~~~~ 105 (334)
T PRK13684 43 PTEANLLDIAFTDPNHGWLVGS-----NRTLLE--TNDGGETWEERSLDLPEENFRLISISFKGD-E---------GWIV 105 (334)
T ss_pred CCCCceEEEEEeCCCcEEEEEC-----CCEEEE--EcCCCCCceECccCCcccccceeeeEEcCC-c---------EEEe
Confidence 346689999998 55566766 565433 444444444311110112334778888643 3 4455
Q ss_pred eCCeEEEEecCC-CC-cccee---eecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh-ccCC
Q 038533 97 SGDFLRLWDVGD-SS-IEPVA---VLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI-AHDK 170 (337)
Q Consensus 97 ~~~~v~vw~~~~-~~-~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~ 170 (337)
+.... ||...+ ++ .+.+. .+.+ ......+.. .+..+++ +..|.|..=+ ..++.-..+. ....
T Consensus 106 G~~g~-i~~S~DgG~tW~~~~~~~~~~~-------~~~~i~~~~--~~~~~~~-g~~G~i~~S~-DgG~tW~~~~~~~~g 173 (334)
T PRK13684 106 GQPSL-LLHTTDGGKNWTRIPLSEKLPG-------SPYLITALG--PGTAEMA-TNVGAIYRTT-DGGKNWEALVEDAAG 173 (334)
T ss_pred CCCce-EEEECCCCCCCeEccCCcCCCC-------CceEEEEEC--CCcceee-eccceEEEEC-CCCCCceeCcCCCcc
Confidence 44322 233332 21 11111 0111 122222222 2233443 4445443322 2333322222 2245
Q ss_pred ceeEEEeCCCcEEEEEcCCCeEEEEECCCC-CCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCC
Q 038533 171 EVYDICWGEARVFASVSADGSVRIFDLRDK-EHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTL 249 (337)
Q Consensus 171 ~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~ 249 (337)
.+.++.+.++..++..+..|.+..- .+.+ +.-..... .....++++.+.+ ++..++++ ..+. ++ ......+.
T Consensus 174 ~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~--~~~~~l~~i~~~~-~g~~~~vg-~~G~-~~-~~s~d~G~ 246 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQR--NSSRRLQSMGFQP-DGNLWMLA-RGGQ-IR-FNDPDDLE 246 (334)
T ss_pred eEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeC--CCcccceeeeEcC-CCCEEEEe-cCCE-EE-EccCCCCC
Confidence 6888888854555555566765432 1122 11111111 2346789999988 77766654 4453 43 32122122
Q ss_pred CeEEeec----ccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceee-eeCCCceeEEEEccCCCceE
Q 038533 250 PVAELER----HRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSM-YSAGSEINQLQWSPAQPDWL 324 (337)
Q Consensus 250 ~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~ 324 (337)
.-..... ....+..+.+.|++. ++++ +.+|.+. ...+.++.-+ .... ..-....+.+.|..+++ .+
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~-G~~G~v~-~S~d~G~tW~-----~~~~~~~~~~~~~~~~~~~~~~-~~ 317 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGE-IWAG-GGNGTLL-VSKDGGKTWE-----KDPVGEEVPSNFYKIVFLDPEK-GF 317 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCC-EEEE-cCCCeEE-EeCCCCCCCe-----ECCcCCCCCcceEEEEEeCCCc-eE
Confidence 1111111 123578889999876 5554 4566554 3333111100 1000 11123577788876664 67
Q ss_pred EEEcCCcEEEEe
Q 038533 325 AIAFSNKMQLLK 336 (337)
Q Consensus 325 ~~~~d~~i~iw~ 336 (337)
+++..|.|.-|+
T Consensus 318 ~~G~~G~il~~~ 329 (334)
T PRK13684 318 VLGQRGVLLRYV 329 (334)
T ss_pred EECCCceEEEec
Confidence 777778776553
No 459
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.61 E-value=3.2 Score=32.19 Aligned_cols=48 Identities=8% Similarity=0.172 Sum_probs=37.7
Q ss_pred EEEEeCC-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC
Q 038533 93 LLASSGD-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI 147 (337)
Q Consensus 93 ~l~~~~~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~ 147 (337)
++++.++ .|.+|++.+...+....+..- +.|..+.++. .|++++|--+
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv------~~V~~l~y~~-~GDYlvTlE~ 79 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFSTV------GRVLQLVYSE-AGDYLVTLEE 79 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEcch------hheeEEEecc-ccceEEEEEe
Confidence 5554555 999999996666777777653 7899999998 8999999754
No 460
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.35 E-value=12 Score=31.53 Aligned_cols=64 Identities=5% Similarity=0.048 Sum_probs=36.1
Q ss_pred CCCeEEEeeC-----CCcEEEEeCCCcc--chhhhhccCCceeEEE-eCCCcEEEEEcCCCe----EEEEECCCCCC
Q 038533 138 EPKRIGTCSI-----DTTCTIWDIEKGV--VETQLIAHDKEVYDIC-WGEARVFASVSADGS----VRIFDLRDKEH 202 (337)
Q Consensus 138 ~~~~l~~~~~-----dg~i~v~d~~~~~--~~~~~~~~~~~v~~~~-~~~~~~l~~~~~dg~----i~iwd~~~~~~ 202 (337)
++.+.+.|+. ...+..||+.+.+ .+..+... ......+ ...+++.+.|+.++. +..||.++.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 5677777764 2358888987654 22222211 1112222 226778888876643 56888887653
No 461
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.17 E-value=21 Score=33.95 Aligned_cols=81 Identities=11% Similarity=0.226 Sum_probs=54.8
Q ss_pred CCeeEEEeecCCCCeEEEeeCCCcEEEEeCCC---------ccc--h-hhh--------hccCCceeEEEeCC----CcE
Q 038533 127 APLTSFDWNEIEPKRIGTCSIDTTCTIWDIEK---------GVV--E-TQL--------IAHDKEVYDICWGE----ARV 182 (337)
Q Consensus 127 ~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~---------~~~--~-~~~--------~~~~~~v~~~~~~~----~~~ 182 (337)
-.|..+..|| ++.+++..|..|...+.=.+. ++. . +++ ..+...|..+.|+| +..
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3688899999 999999888766544432221 111 0 000 13345788999994 578
Q ss_pred EEEEcCCCeEEEEECCCCCCceeeec
Q 038533 183 FASVSADGSVRIFDLRDKEHSTIIYE 208 (337)
Q Consensus 183 l~~~~~dg~i~iwd~~~~~~~~~~~~ 208 (337)
|+.-..|+++++||+.....+.....
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEEE
Confidence 99999999999999987665544443
No 462
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.92 E-value=11 Score=37.32 Aligned_cols=140 Identities=9% Similarity=0.118 Sum_probs=85.0
Q ss_pred CCCcEEEEeCCCccchhhhhccCCceeEEEeC-C--C------cEEEEEcCCCeEEEEECCCCC----Cceee--ecCCC
Q 038533 147 IDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-E--A------RVFASVSADGSVRIFDLRDKE----HSTII--YESPQ 211 (337)
Q Consensus 147 ~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~--~------~~l~~~~~dg~i~iwd~~~~~----~~~~~--~~~~~ 211 (337)
-|+.+.+|+.+++.....+.+-+..|..|..- | | ++++....--.|.++-+.-.+ ..... +....
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~ 176 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISV 176 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeec
Confidence 47899999999987777777777777777765 3 2 234444444556665443221 11110 11112
Q ss_pred CCCCceEEEeecCCCcEEEEEEecCCEEEEE--ECCCC---CCC----------------eEEee-cccceeeEEEeCCC
Q 038533 212 PDTPLLRLAWNKQDLRYMATILMDSNKVVIL--DIRSP---TLP----------------VAELE-RHRACVNAIAWAPQ 269 (337)
Q Consensus 212 ~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~--d~~~~---~~~----------------~~~~~-~~~~~v~~~~~~~~ 269 (337)
....+.++.... +|+.+++|- ||. |+=. ....+ .++ +..+. .+..+|..++....
T Consensus 177 dg~~V~~I~~t~-nGRIF~~G~-dg~-lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 177 DGVSVNCITYTE-NGRIFFAGR-DGN-LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred CCceEEEEEecc-CCcEEEeec-CCC-EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 345678888544 777777654 555 4422 21110 000 11122 45678999999887
Q ss_pred CCCeEEEEcCCCcEEEEeCCC
Q 038533 270 SRRHICSVGDDSQAFIWELPL 290 (337)
Q Consensus 270 ~~~~l~~~~~dg~i~iw~~~~ 290 (337)
.. ++.+-+..|.|.+|++..
T Consensus 254 R~-IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RN-ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cc-eeeeeccCceEEEEEccC
Confidence 77 999999999999999984
No 463
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=88.81 E-value=18 Score=32.95 Aligned_cols=53 Identities=9% Similarity=0.184 Sum_probs=35.5
Q ss_pred cEEEEeCCCccchhhhhccCCcee---------EEEeC-CC---cEEEEEcCCCeEEEEECCCCCC
Q 038533 150 TCTIWDIEKGVVETQLIAHDKEVY---------DICWG-EA---RVFASVSADGSVRIFDLRDKEH 202 (337)
Q Consensus 150 ~i~v~d~~~~~~~~~~~~~~~~v~---------~~~~~-~~---~~l~~~~~dg~i~iwd~~~~~~ 202 (337)
.|.-.|+++|+..-.++.....+. -+... ++ +.++.+..+|.+.+.|.++++.
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 577778899987665553222111 12222 34 3788999999999999998875
No 464
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.68 E-value=14 Score=31.37 Aligned_cols=243 Identities=15% Similarity=0.146 Sum_probs=111.7
Q ss_pred CeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecCCCCc-cceeeecCCCCCcccCCeeEEEeecC---CCCeEEEeeC
Q 038533 73 PTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVGDSSI-EPVAVLNNSKSSEFCAPLTSFDWNEI---EPKRIGTCSI 147 (337)
Q Consensus 73 i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~l~~~~~ 147 (337)
...|+|.|+++ ++++--. .|++++ ..+.. ..+..+..- ..........++++|. ++.+.++.+.
T Consensus 4 P~~~a~~pdG~---------l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v-~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 4 PRSMAFLPDGR---------LLVAERSGRIWVVD-KDGSLKTPVADLPEV-FADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp EEEEEEETTSC---------EEEEETTTEEEEEE-TTTEECEEEEE-TTT-BTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred ceEEEEeCCCc---------EEEEeCCceEEEEe-CCCcCcceecccccc-cccccCCcccceeccccCCCCEEEEEEEc
Confidence 57899999998 8887665 999998 34321 122222110 0111257889999982 2334444332
Q ss_pred C--------CcEEEEeCCCc-------cch-hhhhc---cCCceeEEEeC-CCcEEEEEcCCC-------------eEEE
Q 038533 148 D--------TTCTIWDIEKG-------VVE-TQLIA---HDKEVYDICWG-EARVFASVSADG-------------SVRI 194 (337)
Q Consensus 148 d--------g~i~v~d~~~~-------~~~-~~~~~---~~~~v~~~~~~-~~~~l~~~~~dg-------------~i~i 194 (337)
. ..|.-|....+ +.+ ..+.. .......|+|. ++.++++.+..+ .|.-
T Consensus 73 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilr 152 (331)
T PF07995_consen 73 ADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILR 152 (331)
T ss_dssp E-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEE
T ss_pred ccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEE
Confidence 1 13444443332 111 11111 12234568888 676666655432 2332
Q ss_pred EECCCCC-----------CceeeecCCCCCCCceEEEeecCCCcEEEEEEe-cCC-EEEEEECC--------C-------
Q 038533 195 FDLRDKE-----------HSTIIYESPQPDTPLLRLAWNKQDLRYMATILM-DSN-KVVILDIR--------S------- 246 (337)
Q Consensus 195 wd~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~-d~~-~i~i~d~~--------~------- 246 (337)
.+....- ....++.. ++ .....++|+|.++.++++=.. +.. .|.+..-- .
T Consensus 153 i~~dG~~p~dnP~~~~~~~~~~i~A~-Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~ 230 (331)
T PF07995_consen 153 IDPDGSIPADNPFVGDDGADSEIYAY-GL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSG 230 (331)
T ss_dssp EETTSSB-TTSTTTTSTTSTTTEEEE----SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTS
T ss_pred ecccCcCCCCCccccCCCceEEEEEe-CC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCC
Confidence 3322110 00001000 01 234678999943666654222 111 23332110 0
Q ss_pred -----------CCCCeEEeecccceeeEEEeCCC-------CCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCC
Q 038533 247 -----------PTLPVAELERHRACVNAIAWAPQ-------SRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAG 308 (337)
Q Consensus 247 -----------~~~~~~~~~~~~~~v~~~~~~~~-------~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 308 (337)
...|+..+..| ..+..+.|.+. +. ++++.-..+.|....++ ..... ......+....
T Consensus 231 ~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~-~~~~~~~~~~i~~~~~~--~~~~~-~~~~~~~~~~~ 305 (331)
T PF07995_consen 231 PPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGD-LFVADYGGGRIWRLDLD--EDGSV-TEEEEFLGGFG 305 (331)
T ss_dssp S-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTE-EEEEETTTTEEEEEEEE--TTEEE-EEEEEECTTSS
T ss_pred CccccccCCCCcCccceeecCc-cccCceEEECCccCccccCc-EEEecCCCCEEEEEeee--cCCCc-cceEEccccCC
Confidence 00133334433 45667777643 33 55555556677777765 21110 00011122344
Q ss_pred CceeEEEEccCCCceEEEEcCCcEE
Q 038533 309 SEINQLQWSPAQPDWLAIAFSNKMQ 333 (337)
Q Consensus 309 ~~v~~~~~~~~~~~l~~~~~d~~i~ 333 (337)
.++.++++.|||..+++...+|.|.
T Consensus 306 ~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 306 GRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp S-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CCceEEEEcCCCeEEEEECCCCeEe
Confidence 5899999999998777777788773
No 465
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.47 E-value=13 Score=30.66 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=65.1
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEee------CCCcEEEEeCCCccchhhhhc-----c
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCS------IDTTCTIWDIEKGVVETQLIA-----H 168 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~------~dg~i~v~d~~~~~~~~~~~~-----~ 168 (337)
.|++||..+.+.... -.+ ..+.|+++.|.. +.+++++|. ....+..||+.+..- ..+.. -
T Consensus 17 ~lC~yd~~~~qW~~~--g~~-----i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~i 87 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSP--GNG-----ISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSI 87 (281)
T ss_pred EEEEEECCCCEeecC--CCC-----ceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccC
Confidence 899999988743222 111 227899999985 666777764 456788999876642 22222 2
Q ss_pred CCceeEEEeC--CC-cEEEEEc-C--CCeEEEEECCCCCCceeeecCCCCCCCceEEEeec
Q 038533 169 DKEVYDICWG--EA-RVFASVS-A--DGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNK 223 (337)
Q Consensus 169 ~~~v~~~~~~--~~-~~l~~~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~ 223 (337)
.++|..+.+. +. +..+.|. . +..|..||=.+......- .......|..+.+-|
T Consensus 88 pgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~--~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 88 PGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSD--ILGSGTTIRGLQVLP 146 (281)
T ss_pred CCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEecccc--ccCCCCEEEEEEEEe
Confidence 4778888886 43 3444433 2 334667765554432220 111234566665554
No 466
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=88.28 E-value=14 Score=31.07 Aligned_cols=83 Identities=5% Similarity=-0.113 Sum_probs=42.8
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCC----cEEEEeCCCccc--hhhhh-c-cCC-
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT----TCTIWDIEKGVV--ETQLI-A-HDK- 170 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg----~i~v~d~~~~~~--~~~~~-~-~~~- 170 (337)
.+..||+.+.+...+..+.... . .....+.. ++++.+.|+.++ .+.+||+++.+- +..+. . ...
T Consensus 140 ~v~~yd~~~~~W~~~~~~p~~~---r-~~~~~~~~---~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~ 212 (323)
T TIGR03548 140 KSYLFNLETQEWFELPDFPGEP---R-VQPVCVKL---QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPIS 212 (323)
T ss_pred eEEEEcCCCCCeeECCCCCCCC---C-CcceEEEE---CCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCcee
Confidence 6888998887655444332211 0 11111222 667888887664 356888877652 22111 0 010
Q ss_pred --ceeEEEeCCCcEEEEEcCC
Q 038533 171 --EVYDICWGEARVFASVSAD 189 (337)
Q Consensus 171 --~v~~~~~~~~~~l~~~~~d 189 (337)
...++...++.+++.|+.+
T Consensus 213 ~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 213 LLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred ccceeEEEECCCEEEEECCcC
Confidence 1122333357788888865
No 467
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=88.23 E-value=13 Score=30.30 Aligned_cols=154 Identities=11% Similarity=-0.053 Sum_probs=94.0
Q ss_pred CeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceee
Q 038533 128 PLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTII 206 (337)
Q Consensus 128 ~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 206 (337)
.-..++-.| ++..-.++...+.|--.|..+++....-.+....-..|... ++..-++-+.. -|.-.|-++.+.....
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~ 140 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFP 140 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEee
Confidence 344667777 88888888888888888888887554444444445566666 45544443333 5555666666655444
Q ss_pred ecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeecc-cceeeEEEeCCCCCCeEEEEcCCCcEEE
Q 038533 207 YESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELERH-RACVNAIAWAPQSRRHICSVGDDSQAFI 285 (337)
Q Consensus 207 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~i 285 (337)
..............|.+ .+++-+++. .|. ---.|.. ...+..+... ......|+..|+|+ +-++.-.++.|-.
T Consensus 141 lp~~~a~~nlet~vfD~-~G~lWFt~q-~G~-yGrLdPa--~~~i~vfpaPqG~gpyGi~atpdGs-vwyaslagnaiar 214 (353)
T COG4257 141 LPLEHADANLETAVFDP-WGNLWFTGQ-IGA-YGRLDPA--RNVISVFPAPQGGGPYGICATPDGS-VWYASLAGNAIAR 214 (353)
T ss_pred cccccCCCcccceeeCC-CccEEEeec-ccc-ceecCcc--cCceeeeccCCCCCCcceEECCCCc-EEEEeccccceEE
Confidence 44444567788899998 888888765 221 1111111 2234444332 23457788999998 6666656666666
Q ss_pred EeCC
Q 038533 286 WELP 289 (337)
Q Consensus 286 w~~~ 289 (337)
-|..
T Consensus 215 idp~ 218 (353)
T COG4257 215 IDPF 218 (353)
T ss_pred cccc
Confidence 6655
No 468
>PLN02153 epithiospecifier protein
Probab=87.77 E-value=16 Score=31.06 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=35.4
Q ss_pred CCCeEEEeeCC-----CcEEEEeCCCccc--hhhhh----ccCCceeEEEeCCCcEEEEEcCC-----------CeEEEE
Q 038533 138 EPKRIGTCSID-----TTCTIWDIEKGVV--ETQLI----AHDKEVYDICWGEARVFASVSAD-----------GSVRIF 195 (337)
Q Consensus 138 ~~~~l~~~~~d-----g~i~v~d~~~~~~--~~~~~----~~~~~v~~~~~~~~~~l~~~~~d-----------g~i~iw 195 (337)
++.+++.|+.+ ..+.+||+++.+- +..+. .....-.+++..++++++.|+.+ ..+.+|
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 56777787753 3578889876542 22221 01111122333366777777754 247788
Q ss_pred ECCCCC
Q 038533 196 DLRDKE 201 (337)
Q Consensus 196 d~~~~~ 201 (337)
|..+.+
T Consensus 165 d~~~~~ 170 (341)
T PLN02153 165 NIADGK 170 (341)
T ss_pred ECCCCe
Confidence 988764
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.42 E-value=8.5 Score=33.55 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=86.0
Q ss_pred hhccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCcee-eecC-CCC-CCCce-EEEeecCCCcEEEEEEecCCEE
Q 038533 165 LIAHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTI-IYES-PQP-DTPLL-RLAWNKQDLRYMATILMDSNKV 239 (337)
Q Consensus 165 ~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~-~~~-~~~i~-~~~~~~~~~~~l~~~~~d~~~i 239 (337)
+......+..+-.. +++.++.-+. ..+.++++.+...... +... ++. ...+. ++..-. .+.-+++++.||. |
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~-v 292 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGL-V 292 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCc-e
Confidence 33444556666677 5777666554 6788888876542211 1111 110 01111 111122 5677888999998 6
Q ss_pred EEE-ECCCCCCCeEE----eecccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEE
Q 038533 240 VIL-DIRSPTLPVAE----LERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQL 314 (337)
Q Consensus 240 ~i~-d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 314 (337)
.-| |.+....+-.. +.-...++..+.-..+.+ -+++-...|++.++... . .++.....--..+.-+
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rk-gF~~l~~~G~L~~f~st--~------~~~lL~~~~~~~~~~~ 363 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRK-GFYSLYRNGTLQSFYST--S------EKLLLFERAYQAPQLV 363 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccc-eEEEEcCCCceeeeecc--c------CcceehhhhhcCccee
Confidence 554 77765443211 111112232222222233 67777888888887665 1 2233333334467778
Q ss_pred EEccCCCceEEEEcCCcEEEEeC
Q 038533 315 QWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 315 ~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
++||.+.++++- ..|+++++.+
T Consensus 364 ~~Sp~~~~Ll~e-~~gki~~~~l 385 (733)
T COG4590 364 AMSPNQAYLLSE-DQGKIRLAQL 385 (733)
T ss_pred eeCcccchheee-cCCceEEEEe
Confidence 999998766543 3567776653
No 470
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=87.23 E-value=23 Score=32.17 Aligned_cols=252 Identities=14% Similarity=0.168 Sum_probs=112.6
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCC-CCCCeEEEecCCCCcccCcCCcc-EEEEeC--C-eEEEEe
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDH-PYPPTKLMFDPNSSSRKSSSNRH-LLASSG--D-FLRLWD 105 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~~~~~~~~-~l~~~~--~-~v~vw~ 105 (337)
+..++.+.. +|.+....++.+...+.. . ..+. .....++.+..++. . +++.+. | .+.-|.
T Consensus 222 ~~~~lL~~e----~G~l~~l~l~~~~~~i~i--~-~~g~~~~~~s~l~~l~~g~--------d~lf~gs~~gds~l~~~~ 286 (504)
T PF10433_consen 222 GDRILLQDE----DGDLYLLTLDNDGGSISI--T-YLGTLCSIASSLTYLKNGG--------DYLFVGSEFGDSQLLQIS 286 (504)
T ss_dssp SSEEEEEET----TSEEEEEEEEEEEEEEEE--E-EEEE--S-ESEEEEESTT----------EEEEEESSS-EEEEEEE
T ss_pred CCEEEEEeC----CCeEEEEEEEECCCeEEE--E-EcCCcCChhheEEEEcCCC--------EEEEEEEecCCcEEEEEe
Confidence 666777775 999988877765532111 0 0232 45567788877771 1 444443 3 444444
Q ss_pred cCCCCccceeeecCCCCCcccCCeeEEEeecC---CCC------eEEEee---CCCcEEEEeCCCccchh--h--hhcc-
Q 038533 106 VGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEI---EPK------RIGTCS---IDTTCTIWDIEKGVVET--Q--LIAH- 168 (337)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~------~l~~~~---~dg~i~v~d~~~~~~~~--~--~~~~- 168 (337)
...++.+..+..- +||.+++..+. ... .+++++ .+|.+++.. .|-... . ....
T Consensus 287 --~~~l~~~~~~~N~------~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~ 356 (504)
T PF10433_consen 287 --LSNLEVLDSLPNW------GPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELP 356 (504)
T ss_dssp --SESEEEEEEE----------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEES
T ss_pred --CCCcEEEEeccCc------CCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCC
Confidence 4445666677664 79999988632 111 455543 577888874 222111 1 1111
Q ss_pred -CCceeEEEeC--CCcEEEEEcCCCeEEEEECCC---CCCceeeec-CCCCCCCceEEEeecCCCcEEEEEEecCCEEEE
Q 038533 169 -DKEVYDICWG--EARVFASVSADGSVRIFDLRD---KEHSTIIYE-SPQPDTPLLRLAWNKQDLRYMATILMDSNKVVI 241 (337)
Q Consensus 169 -~~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i 241 (337)
-..++.+... ++.+++....+ .-+++.+.. .+....... ....+.+-..+..- .+..++=....+ |++
T Consensus 357 ~v~~iW~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~--~~~~ivQVt~~~--i~l 431 (504)
T PF10433_consen 357 GVTGIWTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNV--GDGRIVQVTPKG--IRL 431 (504)
T ss_dssp TEEEEEEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE---TS-SSS-EEEEEEE--TTTEEEEEESSE--EEE
T ss_pred CceEEEEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEc--CCCeEEEEecCe--EEE
Confidence 2334445444 24556555554 444666642 221111110 10111111122221 234444444443 888
Q ss_pred EECCCCCCCeEEee-cccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEcc
Q 038533 242 LDIRSPTLPVAELE-RHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSP 318 (337)
Q Consensus 242 ~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 318 (337)
.+... .+...... .....|.+.+... + .++.+..++.+..+.+....... .............|.++...|
T Consensus 432 ~~~~~-~~~~~~w~~~~~~~I~~a~~~~--~-~v~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 432 IDLED-GKLTQEWKPPAGSIIVAASIND--P-QVLVALSGGELVYFELDDNKISV--SDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EESSS-TSEEEEEE-TTS---SEEEESS--S-EEEEEE-TTEEEEEEEETTEEEE--EEE----EE-SS-EEEEE---
T ss_pred EECCC-CeEEEEEeCCCCCeEEEEEECC--C-EEEEEEeCCcEEEEEEECCceee--eeeccccccCCCceEEEEeCC
Confidence 88765 33343332 2344666666654 3 56666668889999887222100 000000011456788887766
No 471
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=87.16 E-value=3.2 Score=22.29 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=21.0
Q ss_pred CCcEEEEEEecCCEEEEEECCCCCCCeEEeec
Q 038533 225 DLRYMATILMDSNKVVILDIRSPTLPVAELER 256 (337)
Q Consensus 225 ~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~ 256 (337)
+++.|+++......|.++|..+ ...+..+..
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~-~~~~~~i~v 32 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTAT-NKVIATIPV 32 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCC-CeEEEEEEC
Confidence 6677777666555599999976 445555543
No 472
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=86.61 E-value=17 Score=30.11 Aligned_cols=171 Identities=13% Similarity=0.182 Sum_probs=86.6
Q ss_pred cEEEEeCCCccchhhhh------ccCCceeEEEeC--CC----cE-EEEEcCCCeEEEEECCCCCCceeeecCCC-----
Q 038533 150 TCTIWDIEKGVVETQLI------AHDKEVYDICWG--EA----RV-FASVSADGSVRIFDLRDKEHSTIIYESPQ----- 211 (337)
Q Consensus 150 ~i~v~d~~~~~~~~~~~------~~~~~v~~~~~~--~~----~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----- 211 (337)
.|.+||+.+++.++++. ...+.+..+.+. ++ .+ .++=...+.|-++|+.+++..+.......
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 46666776666554443 124567777777 22 22 33444456899999998764333221110
Q ss_pred -----------CCCCceEEEeec--CCCcEEEEEEecCCEEEEEECC-----CCCC--------CeEEeecccceeeEEE
Q 038533 212 -----------PDTPLLRLAWNK--QDLRYMATILMDSNKVVILDIR-----SPTL--------PVAELERHRACVNAIA 265 (337)
Q Consensus 212 -----------~~~~i~~~~~~~--~~~~~l~~~~~d~~~i~i~d~~-----~~~~--------~~~~~~~~~~~v~~~~ 265 (337)
....+..++.+| .+++.|+-....+. ++|.+. .... .++.+-........++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR--KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S--EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC--cEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 012355555544 13345655554442 333322 1110 1122211113556788
Q ss_pred eCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCCCceeeeeC--CCceeEEEEcc--CCCceEEE
Q 038533 266 WAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGIDPMSMYSA--GSEINQLQWSP--AQPDWLAI 326 (337)
Q Consensus 266 ~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~--~~~~l~~~ 326 (337)
.+++|. ++++--..+.|..|+.. +...+... ....... -..+.++.+.+ +|...+.+
T Consensus 193 ~D~~G~-ly~~~~~~~aI~~w~~~--~~~~~~~~-~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 193 IDPNGN-LYFTDVEQNAIGCWDPD--GPYTPENF-EILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EETTTE-EEEEECCCTEEEEEETT--TSB-GCCE-EEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ECCCCc-EEEecCCCCeEEEEeCC--CCcCccch-heeEEcCceeeccceeeeccccCceEEEEE
Confidence 899888 88888889999999998 32111111 1122222 24678999999 77555444
No 473
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=86.57 E-value=18 Score=35.04 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=49.3
Q ss_pred cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCC
Q 038533 31 GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGD 108 (337)
Q Consensus 31 ~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~ 108 (337)
...+++|.. .|.+.+++.+.....+.........+..+..-+.|.|+.. .++.+-. ...+|....
T Consensus 160 ~~lla~G~~----~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~---------~~av~~~~g~ls~wS~~g 226 (1023)
T KOG2006|consen 160 FQLLAYGTP----VGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQN---------GFAVTWEKGFLAFWSNQG 226 (1023)
T ss_pred hhhheeccc----ccceeehhhhhhccceeeecccCccccccccccCcCCccc---------eeeeeecccceEEecccc
Confidence 889999997 9999999888777666553343345555778888999988 7777764 777887655
Q ss_pred C
Q 038533 109 S 109 (337)
Q Consensus 109 ~ 109 (337)
.
T Consensus 227 ~ 227 (1023)
T KOG2006|consen 227 N 227 (1023)
T ss_pred c
Confidence 4
No 474
>PLN02193 nitrile-specifier protein
Probab=86.11 E-value=25 Score=31.57 Aligned_cols=138 Identities=9% Similarity=0.021 Sum_probs=67.2
Q ss_pred eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCC-----cEEEEeCCCccchh--h---hhccC
Q 038533 100 FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDT-----TCTIWDIEKGVVET--Q---LIAHD 169 (337)
Q Consensus 100 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg-----~i~v~d~~~~~~~~--~---~~~~~ 169 (337)
.+.+||+.+.+...+..+.... .. ..-.+++.. ++++++.|+.++ .+..||+.+.+-.. . .....
T Consensus 245 dv~~yD~~t~~W~~l~~~~~~P-~~--R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R 319 (470)
T PLN02193 245 GFYSFDTTTNEWKLLTPVEEGP-TP--RSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIR 319 (470)
T ss_pred cEEEEECCCCEEEEcCcCCCCC-CC--ccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCC
Confidence 5788888887544433321100 00 111122221 567778877543 46778877654211 1 00011
Q ss_pred CceeEEEeCCCcEEEEEcCC----CeEEEEECCCCCCceeeec--CCCCCCCceEEEeecCCCcEEEEEEecC-------
Q 038533 170 KEVYDICWGEARVFASVSAD----GSVRIFDLRDKEHSTIIYE--SPQPDTPLLRLAWNKQDLRYMATILMDS------- 236 (337)
Q Consensus 170 ~~v~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~l~~~~~d~------- 236 (337)
.. ..++..++++++.++.+ ..+.+||+.+.+-...... .+.......++.+ ++++++.|+...
T Consensus 320 ~~-~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~---~~~iyv~GG~~~~~~~~~~ 395 (470)
T PLN02193 320 GG-AGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV---GKHIVIFGGEIAMDPLAHV 395 (470)
T ss_pred CC-cEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE---CCEEEEECCccCCcccccc
Confidence 11 12222256777777755 4588999987764322111 1111111222222 567777777531
Q ss_pred ------CEEEEEECCC
Q 038533 237 ------NKVVILDIRS 246 (337)
Q Consensus 237 ------~~i~i~d~~~ 246 (337)
..+.+||+.+
T Consensus 396 ~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 396 GPGQLTDGTFALDTET 411 (470)
T ss_pred CccceeccEEEEEcCc
Confidence 1277888775
No 475
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=85.17 E-value=37 Score=32.73 Aligned_cols=99 Identities=17% Similarity=0.152 Sum_probs=64.3
Q ss_pred CCCceEEEeecCCCcEEEEEEecCCEEEEEECCCC-C---CCeEEeecccc----------eeeEEEeCCCCCCeEEEEc
Q 038533 213 DTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP-T---LPVAELERHRA----------CVNAIAWAPQSRRHICSVG 278 (337)
Q Consensus 213 ~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~-~---~~~~~~~~~~~----------~v~~~~~~~~~~~~l~~~~ 278 (337)
..+...++|+|.+...||+....|. ..|||+... . ..+.....+.+ .-..+.|.++.. .|+.++
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~-Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~-~lLv~~ 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGN-WSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN-RLLVCN 222 (765)
T ss_pred CCccceEEeccCccceEEEEeccCc-EEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC-EEEEEc
Confidence 4578899999988889999999999 999999211 1 11111111112 234788988877 677766
Q ss_pred CCCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEccC
Q 038533 279 DDSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWSPA 319 (337)
Q Consensus 279 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 319 (337)
...+.++|++...... .+........|.++.-+|.
T Consensus 223 -r~~l~~~d~~~~~~~~-----~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 223 -RSKLMLIDFESNWQTE-----YLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred -CCceEEEECCCCCccc-----hhccCCChhheeeEEecCC
Confidence 4568899998332111 1233344567888888887
No 476
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=83.49 E-value=2.9 Score=20.35 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.2
Q ss_pred ceeEEEEecceEEEeeeeccCcceEEEE
Q 038533 23 PLYAMAVCGQRIAVGSFIEDYTNRVDVV 50 (337)
Q Consensus 23 ~v~~~~~s~~~la~g~~~~~~d~~i~i~ 50 (337)
.|.+++...+++|+++. .+.++||
T Consensus 3 ~i~aia~g~~~vavaTS----~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATS----AGYLRIF 26 (27)
T ss_pred eEEEEEccCCEEEEEeC----CCeEEec
Confidence 57788888889999986 8999986
No 477
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=83.47 E-value=35 Score=31.08 Aligned_cols=176 Identities=14% Similarity=0.176 Sum_probs=99.9
Q ss_pred CcEEEEeCCCccchhhhh--ccCCceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCC
Q 038533 149 TTCTIWDIEKGVVETQLI--AHDKEVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQD 225 (337)
Q Consensus 149 g~i~v~d~~~~~~~~~~~--~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 225 (337)
+.|.+.| ++.+.+..+. +....|.++.|- +.-+++|=-.---+.+.|+..++.+..+-+. +-+-.+=-++|.+
T Consensus 304 N~lyVLD-~~L~~vG~l~~la~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeL---KIPGfS~YLHP~~ 379 (521)
T PF09826_consen 304 NNLYVLD-EDLKIVGSLEGLAPGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGEL---KIPGFSDYLHPYD 379 (521)
T ss_pred EEEEEEC-CCCcEeEEccccCCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEE---ECccchhceeECC
Confidence 3466666 4444444443 345789999999 6667776666556889999998877665433 1222333456656
Q ss_pred CcEEEEEEecC-----------CEEEEEECCCCCCCeEEeec---cc-------ceeeEEEeCCCCCCeEEEEcC-----
Q 038533 226 LRYMATILMDS-----------NKVVILDIRSPTLPVAELER---HR-------ACVNAIAWAPQSRRHICSVGD----- 279 (337)
Q Consensus 226 ~~~l~~~~~d~-----------~~i~i~d~~~~~~~~~~~~~---~~-------~~v~~~~~~~~~~~~l~~~~~----- 279 (337)
.++|+..+.+. -+|.+||+..+..|...... -. ..-.++.|.+... +|+.--.
T Consensus 380 e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~-ll~~Pv~~~~~~ 458 (521)
T PF09826_consen 380 ENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKN-LLAFPVSSSYGY 458 (521)
T ss_pred CCeEEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCC-EEEEEEEEccCc
Confidence 66666655432 35889999987665443221 00 1224678888776 5543322
Q ss_pred --CCcEEEEeCCCCCCCCCCCCCceeeeeCCC-------ceeEEEEccCCCceEEEEcCCcEEEEeC
Q 038533 280 --DSQAFIWELPLPPVAGPNGIDPMSMYSAGS-------EINQLQWSPAQPDWLAIAFSNKMQLLKV 337 (337)
Q Consensus 280 --dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~d~~i~iw~l 337 (337)
-..+.++++...+ +....-...|.. .+....+..| .|.+.+ ++.|+++++
T Consensus 459 ~~~~g~~v~~i~~~~-----g~~~~g~i~h~~~~~~~~~~~~R~lyi~d--~lYtvS-~~~i~~~~l 517 (521)
T PF09826_consen 459 FNFQGAYVFSIDPED-----GFTLKGKITHPSPDYYYSYQIQRSLYIGD--TLYTVS-DNGIKAYDL 517 (521)
T ss_pred cccceEEEEEEeCCC-----CeEEEEEEEccCcccccccceeEEEEECC--EEEEEE-CCEEEEEeh
Confidence 1347778777212 111222333443 2555555544 455555 556666653
No 478
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.39 E-value=22 Score=28.59 Aligned_cols=134 Identities=15% Similarity=0.104 Sum_probs=67.1
Q ss_pred EEEEeCCCccchhhhhc-cCCceeEEEeC-CCcEEEEEcC-C--CeEEEEECCCCCCceeeecC---CCCCCCceEEEee
Q 038533 151 CTIWDIEKGVVETQLIA-HDKEVYDICWG-EARVFASVSA-D--GSVRIFDLRDKEHSTIIYES---PQPDTPLLRLAWN 222 (337)
Q Consensus 151 i~v~d~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~---~~~~~~i~~~~~~ 222 (337)
-.+||+.+++.. .+.. ..--..+-.+. +|+++.+|+. + ..+++++.-.........+. -.....--.+.--
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 356888776532 2221 11111222233 6888888875 2 34777776541101111111 0112233344445
Q ss_pred cCCCcEEEEEEecCCEEEEEECCCCC-CCeEE--eec-----ccceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 223 KQDLRYMATILMDSNKVVILDIRSPT-LPVAE--LER-----HRACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 223 ~~~~~~l~~~~~d~~~i~i~d~~~~~-~~~~~--~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
| +|+.|+.|+.......+|..+... ..... +.. ....---+...|+|+ +++.+..+. .|||..
T Consensus 127 ~-DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi~an~~s--~i~d~~ 197 (243)
T PF07250_consen 127 P-DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFIFANRGS--IIYDYK 197 (243)
T ss_pred C-CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCC-EEEEEcCCc--EEEeCC
Confidence 5 899999999887646666653221 11111 110 011112456679999 888887654 456766
No 479
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=82.26 E-value=47 Score=31.60 Aligned_cols=98 Identities=15% Similarity=0.288 Sum_probs=52.1
Q ss_pred EEEeC-CCcEEEEEcCCCe-----EEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCC
Q 038533 174 DICWG-EARVFASVSADGS-----VRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSP 247 (337)
Q Consensus 174 ~~~~~-~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~ 247 (337)
.+.|- .|..+++-..||. +.++..+..+....-... .-......++|+- ....++++.. +. +.+|-..+.
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~-~s~vlav~~~-n~-~~lwttkNy 326 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNL-LSTVLAVAEG-NL-LKLWTTKNY 326 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhH-HHHHHHHhhc-ce-EEEEEccce
Confidence 36677 5888888765543 555554333221111111 1234566777875 5555555433 33 999987763
Q ss_pred CCCeEEeecccceeeEEEeCCCCCCeEEE
Q 038533 248 TLPVAELERHRACVNAIAWAPQSRRHICS 276 (337)
Q Consensus 248 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 276 (337)
.-.++. ...-..+.-+.|+|...+-|..
T Consensus 327 hWYLK~-e~~ip~~s~vkwhpe~~nTl~f 354 (1243)
T COG5290 327 HWYLKV-ERQIPGISYVKWHPEEKNTLLF 354 (1243)
T ss_pred EEEEEE-eecCCCcceeeeccccCcEEEE
Confidence 322211 1123456678899976643333
No 480
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=82.10 E-value=37 Score=30.27 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=35.2
Q ss_pred CCceEEEeecCCCcEEEEEEecCCEEEEEECCCCC-CCeEEe----e-cccceeeEEEeCCCC
Q 038533 214 TPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPT-LPVAEL----E-RHRACVNAIAWAPQS 270 (337)
Q Consensus 214 ~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~-~~~~~~----~-~~~~~v~~~~~~~~~ 270 (337)
..-+.|+|.| ++++|++--..|. |++++..... ..+..+ . ........|+++|+-
T Consensus 30 ~~Pw~maflP-DG~llVtER~~G~-I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGP-DNQLWVTERATGK-ILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcC-CCeEEEEEecCCE-EEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4568899999 8877766443576 9888765422 112111 1 124678899999885
No 481
>PRK13614 lipoprotein LpqB; Provisional
Probab=82.06 E-value=42 Score=30.94 Aligned_cols=172 Identities=8% Similarity=0.085 Sum_probs=87.4
Q ss_pred CCCcEEEEeCCCccchhhhhccCC-ceeEEEeC-CCcEEEEEcCCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecC
Q 038533 147 IDTTCTIWDIEKGVVETQLIAHDK-EVYDICWG-EARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQ 224 (337)
Q Consensus 147 ~dg~i~v~d~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 224 (337)
.+|.+...+-..-.++.-..+... .+.+.+.+ ++..++....++. .+|-...+......... ..+..-.|.+
T Consensus 319 ~~G~l~~~~~~~~~pv~g~~g~~~~~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g----~~Lt~PS~d~- 392 (573)
T PRK13614 319 SDGELVRYENGQISPLPDIQSVAGLGPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSG----STLTRPSFSP- 392 (573)
T ss_pred cCCeEEEecCCCcccCCCccCcCcccccceeecCCCceEEEecCCCc-EEEEecCCCcceeeecC----CCccCCcccC-
Confidence 355554443222223333333323 57778888 7888888777662 33432223333333332 3466677776
Q ss_pred CCcEEEEEEecC-CEEEEEECCCCCC----Ce--EEeecccc-eeeEEEeCCCCCCeEEEEcCCCc--EEEEeCCCCCCC
Q 038533 225 DLRYMATILMDS-NKVVILDIRSPTL----PV--AELERHRA-CVNAIAWAPQSRRHICSVGDDSQ--AFIWELPLPPVA 294 (337)
Q Consensus 225 ~~~~l~~~~~d~-~~i~i~d~~~~~~----~~--~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~--i~iw~~~~~~~~ 294 (337)
++ .+-+...+. ..|..+.-..... .. .......+ .|..+..|++|-..++....+|. |.|--+......
T Consensus 393 ~g-~vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G 471 (573)
T PRK13614 393 QD-WVWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDG 471 (573)
T ss_pred CC-CEEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCC
Confidence 55 444444333 1244433211111 00 11122223 59999999999855555655666 777655522222
Q ss_pred CCCC-CCceeeeeCCCceeEEEEccCCCceEEE
Q 038533 295 GPNG-IDPMSMYSAGSEINQLQWSPAQPDWLAI 326 (337)
Q Consensus 295 ~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 326 (337)
.|.. ..+..+ .....+.+++|..++..++.+
T Consensus 472 ~P~~L~~~~~~-~~~~~~~sl~W~~~~sl~V~~ 503 (573)
T PRK13614 472 TPRELTAPITL-AADSDADTGAWVGDSTVVVTK 503 (573)
T ss_pred CeEEccCceec-ccCCCcceeEEcCCCEEEEEe
Confidence 2111 011122 334688999999999755544
No 482
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=81.91 E-value=34 Score=32.92 Aligned_cols=143 Identities=9% Similarity=0.090 Sum_probs=76.5
Q ss_pred cceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeCC-eEEEEecC----CCCc-----cc
Q 038533 44 TNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD-FLRLWDVG----DSSI-----EP 113 (337)
Q Consensus 44 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~-~v~vw~~~----~~~~-----~~ 113 (337)
|+.+.+|++....+-... ......|..++.-.-....+.....++|..+.. .+.++-+. +++. ..
T Consensus 101 dnkLiLWnynn~neyq~i-----dd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fnTgl 175 (1263)
T COG5308 101 DNKLILWNYNNSNEYQEI-----DDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFNTGL 175 (1263)
T ss_pred CCEEEEEecCCCcchhhh-----hhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEecce
Confidence 899999999865543322 223333444443222211122222234444443 44444332 2211 11
Q ss_pred eeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCc-----------------cchhh-------hhccC
Q 038533 114 VAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKG-----------------VVETQ-------LIAHD 169 (337)
Q Consensus 114 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-----------------~~~~~-------~~~~~ 169 (337)
....+| -.|.|+.-+. +|+.+.+|-.| +-+|.+.-. ..+.. +.-|.
T Consensus 176 ~vsvqG-------inV~civs~e-~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipg 245 (1263)
T COG5308 176 VVSVQG-------INVRCIVSEE-DGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPG 245 (1263)
T ss_pred EEeccC-------ceeEEEEecc-CCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcc
Confidence 222233 4577887776 89999998877 666654311 00111 11345
Q ss_pred CceeEEEeC-CCcEEEEEcCCCeEEEEECCCCC
Q 038533 170 KEVYDICWG-EARVFASVSADGSVRIFDLRDKE 201 (337)
Q Consensus 170 ~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 201 (337)
..|..++.+ ....+.+-+....|+.|.+....
T Consensus 246 etI~Ql~vDqsRg~ly~Lr~kS~Vray~itkng 278 (1263)
T COG5308 246 ETIKQLAVDQSRGLLYVLRKKSAVRAYSITKNG 278 (1263)
T ss_pred cchhheeecccccceeeecccceeeeEeeeccc
Confidence 667778887 45677777777888888876543
No 483
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=81.67 E-value=32 Score=29.31 Aligned_cols=41 Identities=5% Similarity=-0.141 Sum_probs=20.4
Q ss_pred CcEEEEeCCCcc--chhhhhccCCceeEEEeCCCcEEEEEcCC
Q 038533 149 TTCTIWDIEKGV--VETQLIAHDKEVYDICWGEARVFASVSAD 189 (337)
Q Consensus 149 g~i~v~d~~~~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 189 (337)
..+.+||..+.+ .+..+......-.+++..++++++.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeee
Confidence 468889987754 22222210111123333367777777653
No 484
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=81.18 E-value=30 Score=28.71 Aligned_cols=203 Identities=10% Similarity=0.014 Sum_probs=0.0
Q ss_pred eEEEecCCCCcccCcCCccEEEEeCC--eEEEEecC-----CCCccceeeecCCCCCcccCCeeEEEeecCCCCe-----
Q 038533 74 TKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVG-----DSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKR----- 141 (337)
Q Consensus 74 ~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----- 141 (337)
+.|+++|.+. +-++..+ ...+||.. .-...++..+.......-....+.+.|+. ....
T Consensus 26 WGia~~p~~~---------~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~ 95 (336)
T TIGR03118 26 WGLSYRPGGP---------FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGE 95 (336)
T ss_pred ceeEecCCCC---------EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCC
Q ss_pred -------EEEeeCCCcEEEEeCCCccc-------hhhhhccCCceeEEEeC----CCcEEEEEcCCCeEEEEECCCCCCc
Q 038533 142 -------IGTCSIDTTCTIWDIEKGVV-------ETQLIAHDKEVYDICWG----EARVFASVSADGSVRIFDLRDKEHS 203 (337)
Q Consensus 142 -------l~~~~~dg~i~v~d~~~~~~-------~~~~~~~~~~v~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~ 203 (337)
++.+++||+|.-|...-+.. +..-.....--..+++. ...+.++-...++|.+||-.-.+..
T Consensus 96 g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~ 175 (336)
T TIGR03118 96 GITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP 175 (336)
T ss_pred CcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc
Q ss_pred ee----------------eecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEe--ecccceeeEEE
Q 038533 204 TI----------------IYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAEL--ERHRACVNAIA 265 (337)
Q Consensus 204 ~~----------------~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~ 265 (337)
.. +... ...-.|+-..-.+ +.+.=+.+...|. |-+||+. +..++++ .+.-...+.++
T Consensus 176 ~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~-~~~d~v~G~G~G~-VdvFd~~--G~l~~r~as~g~LNaPWG~a 250 (336)
T TIGR03118 176 LPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDA-DRNDEVAGAGLGY-VNVFTLN--GQLLRRVASSGRLNAPWGLA 250 (336)
T ss_pred CCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCC-cccccccCCCcce-EEEEcCC--CcEEEEeccCCcccCCceee
Q ss_pred eCC------CCCCeEEEEcCCCcEEEEeCCCCC
Q 038533 266 WAP------QSRRHICSVGDDSQAFIWELPLPP 292 (337)
Q Consensus 266 ~~~------~~~~~l~~~~~dg~i~iw~~~~~~ 292 (337)
..| .+. +|+---.||+|..||...+.
T Consensus 251 ~APa~FG~~sg~-lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 251 IAPESFGSLSGA-LLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred eChhhhCCCCCC-eEEeecCCceeEEecCCCCc
No 485
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.37 E-value=62 Score=32.30 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=25.7
Q ss_pred CCCCCCCeEEEecCCCCcccCcCCccEEEEeCC--eEEEEecCCC
Q 038533 67 FDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGD--FLRLWDVGDS 109 (337)
Q Consensus 67 ~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~~--~v~vw~~~~~ 109 (337)
.+.......++|.|... ++|.+.. .|++|-...-
T Consensus 32 ~G~~~~~~~~afD~~q~---------llai~t~tg~i~~yg~~~v 67 (993)
T KOG1983|consen 32 HGFPSTPSALAFDPTQG---------LLAIGTRTGAIKIYGQPGV 67 (993)
T ss_pred cCCCCCCcceeeccccc---------eEEEEEecccEEEecccce
Confidence 34455677899999998 9999884 8888875543
No 486
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=80.09 E-value=27 Score=33.64 Aligned_cols=93 Identities=12% Similarity=0.109 Sum_probs=63.3
Q ss_pred EEEEEc-CCCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEE-EEecC---C-EEEEEECCCCCCCeEEee
Q 038533 182 VFASVS-ADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMAT-ILMDS---N-KVVILDIRSPTLPVAELE 255 (337)
Q Consensus 182 ~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~-~~~d~---~-~i~i~d~~~~~~~~~~~~ 255 (337)
.|+... ..+.|.+-|.........-.. ...++.+-.|+| +|+.|+- .+.++ . .|++-|+++.+.-+-++.
T Consensus 320 kiAfv~~~~~~L~~~D~dG~n~~~ve~~---~~~~i~sP~~SP-DG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ 395 (912)
T TIGR02171 320 KLAFRNDVTGNLAYIDYTKGASRAVEIE---DTISVYHPDISP-DGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLP 395 (912)
T ss_pred eEEEEEcCCCeEEEEecCCCCceEEEec---CCCceecCcCCC-CCCEEEEEEeecCCCCCceEEEEehhccCCCceEee
Confidence 344444 345888888877664433122 357899999999 9998887 55555 2 499999998766555666
Q ss_pred cccceeeEEEeCCCCCCeEEEEc
Q 038533 256 RHRACVNAIAWAPQSRRHICSVG 278 (337)
Q Consensus 256 ~~~~~v~~~~~~~~~~~~l~~~~ 278 (337)
.....|..-...++|...|+-.+
T Consensus 396 ve~aaiprwrv~e~gdt~ivyv~ 418 (912)
T TIGR02171 396 VENAAIPRWRVLENGDTVIVYVS 418 (912)
T ss_pred cccccccceEecCCCCeEEEEEc
Confidence 66777877778888875554443
No 487
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=79.82 E-value=43 Score=29.59 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=24.1
Q ss_pred ceeeEEEeCCCCCCeEEEEcCCCcEEEEeCC
Q 038533 259 ACVNAIAWAPQSRRHICSVGDDSQAFIWELP 289 (337)
Q Consensus 259 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 289 (337)
..|.+++..+..+ ++++.+.+|.|.+|++.
T Consensus 190 ~~I~~v~~d~~r~-~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 190 PKIVQVAVDPSRR-LLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp --EEEEEEETTTT-EEEEEESSE-EEEEEE-
T ss_pred hceeeEEecCCcC-EEEEEeCCCcEEEEEEe
Confidence 3488888888887 99999999999999998
No 488
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=79.79 E-value=60 Score=31.28 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=44.1
Q ss_pred CCeEEEeeCCCcEEEEeCCCccchhhhhccCCcee---------E--EEeC--C---CcEEEEEcC----------CCeE
Q 038533 139 PKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVY---------D--ICWG--E---ARVFASVSA----------DGSV 192 (337)
Q Consensus 139 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~v~---------~--~~~~--~---~~~l~~~~~----------dg~i 192 (337)
+..++.++.|+.+.-.|.++|+....+.. .+.+. . .... | ++.+++|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 35788888999999999999987765431 11110 0 0011 2 456666643 6889
Q ss_pred EEEECCCCCCceee
Q 038533 193 RIFDLRDKEHSTII 206 (337)
Q Consensus 193 ~iwd~~~~~~~~~~ 206 (337)
+-+|.++++..-..
T Consensus 339 ~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 339 RAFDVNTGALVWAW 352 (764)
T ss_pred EEEECCCCcEeeEE
Confidence 99999999865443
No 489
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=78.24 E-value=41 Score=28.49 Aligned_cols=150 Identities=12% Similarity=0.124 Sum_probs=0.0
Q ss_pred CceeEEEeC-CCcEEEEEcCCCe------EEEEECCC------CCCceeeecCCCCCCCce--------EEEeecCCCcE
Q 038533 170 KEVYDICWG-EARVFASVSADGS------VRIFDLRD------KEHSTIIYESPQPDTPLL--------RLAWNKQDLRY 228 (337)
Q Consensus 170 ~~v~~~~~~-~~~~l~~~~~dg~------i~iwd~~~------~~~~~~~~~~~~~~~~i~--------~~~~~~~~~~~ 228 (337)
+.+..+.+. ++..+++.+.+|. +..+++.. .-............+... ++++.+ ++.+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCCE
Q ss_pred EEEEEec------CCEEEEEECCCCCCCeEEe---------------ecccceeeEEEeCCCCCCeEEEEcCCC------
Q 038533 229 MATILMD------SNKVVILDIRSPTLPVAEL---------------ERHRACVNAIAWAPQSRRHICSVGDDS------ 281 (337)
Q Consensus 229 l~~~~~d------~~~i~i~d~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~l~~~~~dg------ 281 (337)
+++.-.+ .. |+.++.. +..+..+ ......+-+++++|+|. .|+++.+..
T Consensus 99 ~is~E~~~~~~~~p~-I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~-~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 99 WISSEGGRTGGIPPR-IRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR-TLFAAMESPLKQDGP 174 (326)
T ss_pred EEEeCCccCCCCCCE-EEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCC-EEEEEECccccCCCc
Q ss_pred --------cEEEEeCCCCCCCCCCCCCceeeee-----CCCceeEEEEccCCCceE
Q 038533 282 --------QAFIWELPLPPVAGPNGIDPMSMYS-----AGSEINQLQWSPAQPDWL 324 (337)
Q Consensus 282 --------~i~iw~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~ 324 (337)
.++++.....+...+..+..+.+.. ....|..+.+-++++.|+
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLv 230 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLV 230 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEE
No 490
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=78.24 E-value=3.4 Score=20.79 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=19.5
Q ss_pred CeEEEeeCCCcEEEEeCCCccchh
Q 038533 140 KRIGTCSIDTTCTIWDIEKGVVET 163 (337)
Q Consensus 140 ~~l~~~~~dg~i~v~d~~~~~~~~ 163 (337)
..++.++.+|.+..+|.++|+.+.
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEE
Confidence 467778889999999998887654
No 491
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=78.19 E-value=12 Score=34.24 Aligned_cols=67 Identities=13% Similarity=0.122 Sum_probs=40.7
Q ss_pred CCCeEEEeeCCCcEEEEeCCC----ccch-----------hhhhc-----------cCCceeEEEeC-----CCcEEEEE
Q 038533 138 EPKRIGTCSIDTTCTIWDIEK----GVVE-----------TQLIA-----------HDKEVYDICWG-----EARVFASV 186 (337)
Q Consensus 138 ~~~~l~~~~~dg~i~v~d~~~----~~~~-----------~~~~~-----------~~~~v~~~~~~-----~~~~l~~~ 186 (337)
+...++.+..||.+....... +... ..+.+ ......+++.+ ...++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 567888888899888887654 1100 00100 01223333333 46789999
Q ss_pred cCCCeEEEEECCCCCCce
Q 038533 187 SADGSVRIFDLRDKEHST 204 (337)
Q Consensus 187 ~~dg~i~iwd~~~~~~~~ 204 (337)
+.|+++|+||+.+++...
T Consensus 237 ~~D~~LRiW~l~t~~~~~ 254 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLA 254 (547)
T ss_dssp ETTSEEEEEETTTTCEEE
T ss_pred eCCCeEEEEECCCCeEEE
Confidence 999999999999998733
No 492
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=78.11 E-value=11 Score=34.52 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=23.2
Q ss_pred eeeEEEeCC----CCCCeEEEEcCCCcEEEEeCCCCCC
Q 038533 260 CVNAIAWAP----QSRRHICSVGDDSQAFIWELPLPPV 293 (337)
Q Consensus 260 ~v~~~~~~~----~~~~~l~~~~~dg~i~iw~~~~~~~ 293 (337)
....++.++ +.. +|++.+.|+++|+||+.....
T Consensus 216 ~~~~~~~~~~~~~~~~-~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 216 VAASLAVSSSEINDDT-FLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp -EEEEEE-----ETTT-EEEEEETTSEEEEEETTTTCE
T ss_pred ccceEEEecceeCCCC-EEEEEeCCCeEEEEECCCCeE
Confidence 345566665 444 999999999999999995443
No 493
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=77.92 E-value=80 Score=31.68 Aligned_cols=142 Identities=13% Similarity=0.146 Sum_probs=82.3
Q ss_pred CeEEEee---------CCCcEEEEeCCC-----ccchhhh-------hccCCceeEEEeCCCcEEEEEcCCCeEEEEEC-
Q 038533 140 KRIGTCS---------IDTTCTIWDIEK-----GVVETQL-------IAHDKEVYDICWGEARVFASVSADGSVRIFDL- 197 (337)
Q Consensus 140 ~~l~~~~---------~dg~i~v~d~~~-----~~~~~~~-------~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~- 197 (337)
.++++|. .-|.++++|+-. +++.... +...++|..++=-.|.++ ++. ...|.+|++
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV~G~l~-~~~-GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLL-SSQ-GQKIIVRKLD 1124 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEeccEEE-Ecc-CcEEEEEEec
Confidence 4667664 347899999743 3322211 244667777665456544 333 357999999
Q ss_pred CCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCCEEEEEECCCCCCCeEEeec--ccceeeEEEeCCCCCC-eE
Q 038533 198 RDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVVILDIRSPTLPVAELER--HRACVNAIAWAPQSRR-HI 274 (337)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~~i~i~d~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~-~l 274 (337)
+.......-+.. -+++-....- -.++++.|.--.+ |.+.-.......+..+.. ..-.+.++.|--+|.. .+
T Consensus 1125 r~~~ligVaFiD----~~~yv~s~~~-vknlIl~gDV~ks-isfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~f 1198 (1366)
T KOG1896|consen 1125 RDSELIGVAFID----LPLYVHSMKV-VKNLILAGDVMKS-ISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSF 1198 (1366)
T ss_pred cCCcceeeEEec----cceeEEehhh-hhhheehhhhhhc-eEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEE
Confidence 554443333322 2333333332 4667777776666 777766642222222211 1225777888777653 57
Q ss_pred EEEcCCCcEEEEeCC
Q 038533 275 CSVGDDSQAFIWELP 289 (337)
Q Consensus 275 ~~~~~dg~i~iw~~~ 289 (337)
+++..|++|++|-..
T Consensus 1199 lvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1199 LVSDADRNIHVYMYA 1213 (1366)
T ss_pred EEEcCCCcEEEEEeC
Confidence 888899999998776
No 494
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=77.89 E-value=42 Score=28.48 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=37.7
Q ss_pred CCceEEEeecC------CCcEEEEEEecCCEEEEEECCCCCCCeE--E-eecccceeeEEEeCCCCCCeEEEEcCCCcEE
Q 038533 214 TPLLRLAWNKQ------DLRYMATILMDSNKVVILDIRSPTLPVA--E-LERHRACVNAIAWAPQSRRHICSVGDDSQAF 284 (337)
Q Consensus 214 ~~i~~~~~~~~------~~~~l~~~~~d~~~i~i~d~~~~~~~~~--~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 284 (337)
..+..+.|-+. .+. ++++...+..|....+........ . +......+..+++.|+|. ++++-..+|.|.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGD-LFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-LYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTE-EEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-EEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCc-EEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-EEEEECCCCeEe
Confidence 34555666531 233 444444444488777764332111 1 223344789999999998 777777788764
No 495
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=77.76 E-value=70 Score=30.89 Aligned_cols=72 Identities=14% Similarity=0.057 Sum_probs=48.2
Q ss_pred ceeeEEEeCCCCCCeEEEEcCCCcEEEEeCCCCCCCCCCCC-----Cce---e------eeeCCCceeEEEEccCCCceE
Q 038533 259 ACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGI-----DPM---S------MYSAGSEINQLQWSPAQPDWL 324 (337)
Q Consensus 259 ~~v~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-----~~~---~------~~~~~~~v~~~~~~~~~~~l~ 324 (337)
..|.++.-..-+. +++..-.||+|.++|.. +....... .+. . .+.+-..+..++|||.+..++
T Consensus 260 ~~V~si~~~~~~~-~v~~~~~DGsI~~~dr~--t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 260 KRVVSITSPELDI-VVAFAFSDGSIEFRDRN--TMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred CeEEEEEecccCc-EEEEEEcCCeEEEEecC--cchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 4567777666666 88999999999999988 54321111 111 0 111223566799999998888
Q ss_pred EEEcCCcEE
Q 038533 325 AIAFSNKMQ 333 (337)
Q Consensus 325 ~~~~d~~i~ 333 (337)
....+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 888888754
No 496
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=77.75 E-value=62 Score=30.30 Aligned_cols=173 Identities=14% Similarity=0.137 Sum_probs=88.0
Q ss_pred ceeeeeCCCceeEEEEe--cceEEEeeeeccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCc
Q 038533 14 NSVTHESPYPLYAMAVC--GQRIAVGSFIEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNR 91 (337)
Q Consensus 14 ~~~~~~~~~~v~~~~~s--~~~la~g~~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~ 91 (337)
..+.+.....|-.+.|. ++.+++... +|.|.+|+++....+... .+...+...+.-=+|-++... . ....
T Consensus 122 ~~~~~kl~~kvv~Ik~~~~~~~I~vvl~----nG~i~~~d~~~~~l~~~~--~l~~~~~~~v~ys~fv~~~~~-~-~~~~ 193 (670)
T PF10395_consen 122 NEFELKLDDKVVGIKFSSDGKIIYVVLE----NGSIQIYDFSENSLEKVP--QLKLKSSINVSYSKFVNDFEL-E-NGKD 193 (670)
T ss_pred ceEEEEcccceEEEEEecCCCEEEEEEc----CCcEEEEecccccccccc--ccccccccceehhhhhccccc-c-cCCc
Confidence 44556678889999998 777777775 999999999444333322 222233332221133332210 0 0001
Q ss_pred cEEEEeC---C--eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeCCCcEEEEeCCCccchhhhh
Q 038533 92 HLLASSG---D--FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLI 166 (337)
Q Consensus 92 ~~l~~~~---~--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~ 166 (337)
.+|+.+. + ..+++.+.... .....+.....+. .......|.-..|.+..- .+++|.+|++...+...++.
T Consensus 194 ~ll~v~~~~~~k~~ykL~~l~~~~-~~~~El~s~~~e~--~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~ 268 (670)
T PF10395_consen 194 LLLTVSQLSNSKLSYKLISLSNES-SSIFELSSTILEN--FGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTIS 268 (670)
T ss_pred eEEEEEEcCCCcEEEEEEEeccCC-cceEEeehheecc--CCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEE
Confidence 2333332 2 88999982221 2222222111111 112222222224554443 67899999997766444433
Q ss_pred c-----cC-CceeEEEeC-CCcEEEEEcCCCeEEEEECCCCC
Q 038533 167 A-----HD-KEVYDICWG-EARVFASVSADGSVRIFDLRDKE 201 (337)
Q Consensus 167 ~-----~~-~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 201 (337)
- .. ..+.++.-- +++.|++. +..|.+.|+.-..
T Consensus 269 l~~ii~~~~~~~vSl~~~s~nRvLLs~--~nkIyLld~~~~s 308 (670)
T PF10395_consen 269 LPSIIDKESDDLVSLKPPSPNRVLLSV--NNKIYLLDLKFES 308 (670)
T ss_pred echhhccccccceEeecCCCCeEEEEc--CCEEEEEeehhhh
Confidence 1 11 234444443 56666654 4689999986543
No 497
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=77.60 E-value=5.8 Score=21.20 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=20.6
Q ss_pred CCCe-EEEeeCCCcEEEEeCCCccchhhhhc
Q 038533 138 EPKR-IGTCSIDTTCTIWDIEKGVVETQLIA 167 (337)
Q Consensus 138 ~~~~-l~~~~~dg~i~v~d~~~~~~~~~~~~ 167 (337)
+++. +++...++.|.++|..+++.+..+..
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4454 44445688999999988876666553
No 498
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=74.85 E-value=52 Score=28.01 Aligned_cols=52 Identities=8% Similarity=-0.016 Sum_probs=27.5
Q ss_pred CCCeEEEeeCC-----------CcEEEEeCCCccchhhhhccCC---ceeEEEeCCCcEEEEEcCC
Q 038533 138 EPKRIGTCSID-----------TTCTIWDIEKGVVETQLIAHDK---EVYDICWGEARVFASVSAD 189 (337)
Q Consensus 138 ~~~~l~~~~~d-----------g~i~v~d~~~~~~~~~~~~~~~---~v~~~~~~~~~~l~~~~~d 189 (337)
++.+.+.|+.+ ..+..||..+.+-...-..... ....+...++++.+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 66788888753 2477788876552111101111 1111223367788888764
No 499
>PRK10115 protease 2; Provisional
Probab=74.43 E-value=82 Score=30.05 Aligned_cols=241 Identities=10% Similarity=0.037 Sum_probs=109.5
Q ss_pred ceeEEEEe--cceEEEeee-eccCcceEEEEEecCCCcceecCCCcCCCCCCCCeEEEecCCCCcccCcCCccEEEEeC-
Q 038533 23 PLYAMAVC--GQRIAVGSF-IEDYTNRVDVVSFEPESLSIKTHPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSG- 98 (337)
Q Consensus 23 ~v~~~~~s--~~~la~g~~-~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~l~~~~- 98 (337)
.+..+.++ +++||.+.. .+++.-.|++.++. ++.... ......-..++|.+|++ .++.+..
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~--tg~~l~-----~~i~~~~~~~~w~~D~~--------~~~y~~~~ 192 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLE--TGNWYP-----ELLDNVEPSFVWANDSW--------TFYYVRKH 192 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECC--CCCCCC-----ccccCcceEEEEeeCCC--------EEEEEEec
Confidence 36666777 788888764 22233446665554 332111 11111125699999987 3545432
Q ss_pred -----C-eEEEEecCCCCccceeeecCCCCCcccCCeeEEEeecCCCCeEEEeeC---CCcEEEEeCC--Cccchhhhhc
Q 038533 99 -----D-FLRLWDVGDSSIEPVAVLNNSKSSEFCAPLTSFDWNEIEPKRIGTCSI---DTTCTIWDIE--KGVVETQLIA 167 (337)
Q Consensus 99 -----~-~v~vw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~---dg~i~v~d~~--~~~~~~~~~~ 167 (337)
. .|..+++.++..+....+.... ....-..+.+.++.+++..+. ++.+.+++.. ++.....+..
T Consensus 193 ~~~~~~~~v~~h~lgt~~~~d~lv~~e~~-----~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (686)
T PRK10115 193 PVTLLPYQVWRHTIGTPASQDELVYEEKD-----DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR 267 (686)
T ss_pred CCCCCCCEEEEEECCCChhHCeEEEeeCC-----CCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC
Confidence 1 7788888877323333444322 222212233326665554433 3578888843 3332211221
Q ss_pred cCCceeEEEeCCCcEEEEEcC----CCeEEEEECCCCCCceeeecCCCCCCCceEEEeecCCCcEEEEEEecCC-EEEEE
Q 038533 168 HDKEVYDICWGEARVFASVSA----DGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSN-KVVIL 242 (337)
Q Consensus 168 ~~~~v~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~d~~-~i~i~ 242 (337)
..+....+. +.+..|..-+. ...|...++.....-..+... .....+..+.+. .+.++++...++. .+.++
T Consensus 268 ~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~-~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 268 RKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPP-RENIMLEGFTLF--TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred CCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECC-CCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEE
Confidence 112222222 22233333222 223444455422222233322 123467777776 3344444444544 34555
Q ss_pred ECCCCCCCeEEee-cccceeeEEEeC--CCCCCeEEEEcC---CCcEEEEeCC
Q 038533 243 DIRSPTLPVAELE-RHRACVNAIAWA--PQSRRHICSVGD---DSQAFIWELP 289 (337)
Q Consensus 243 d~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~~l~~~~~---dg~i~iw~~~ 289 (337)
|... ..+..+. .....+..+.++ +++..++++.+. -+.+..+|+.
T Consensus 344 ~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~ 394 (686)
T PRK10115 344 NRKT--REVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMD 394 (686)
T ss_pred cCCC--CceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECC
Confidence 5432 2233333 222233333444 343324544442 3567777776
No 500
>PRK13613 lipoprotein LpqB; Provisional
Probab=74.16 E-value=76 Score=29.58 Aligned_cols=158 Identities=16% Similarity=0.043 Sum_probs=77.6
Q ss_pred ceeEEEeC-CCcEEEEEcCCC-eEEEEECCCCCC----ceeeecCCCCCCCceEEEeecCCCcEEEEEEe--cCC-EEEE
Q 038533 171 EVYDICWG-EARVFASVSADG-SVRIFDLRDKEH----STIIYESPQPDTPLLRLAWNKQDLRYMATILM--DSN-KVVI 241 (337)
Q Consensus 171 ~v~~~~~~-~~~~l~~~~~dg-~i~iwd~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--d~~-~i~i 241 (337)
.+.+++.+ ++..++....++ .+.+..+..+.. ...... ...+..-.|.+ ++ .+-+... ++. .+++
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~----~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v 437 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTA----DGRLTSPSWDG-RG-DLWVVDRDPADPRLLWL 437 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeec----cCcccCCcCcC-CC-CEEEecCCCCCceEEEE
Confidence 57788888 777777776655 455554433322 111221 23466666766 44 3434322 111 1444
Q ss_pred EECCCCCCCeEE-eeccc-ceeeEEEeCCCCCCeEEEEcC--CCcEEEEeCCCCCCCCCCCCCceeeeeCCCceeEEEEc
Q 038533 242 LDIRSPTLPVAE-LERHR-ACVNAIAWAPQSRRHICSVGD--DSQAFIWELPLPPVAGPNGIDPMSMYSAGSEINQLQWS 317 (337)
Q Consensus 242 ~d~~~~~~~~~~-~~~~~-~~v~~~~~~~~~~~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 317 (337)
..- . +.+... ..... ..|..+..+++|-...+.... .++|.|=-+.........-..+..+......+.+++|.
T Consensus 438 ~~~-~-G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~ 515 (599)
T PRK13613 438 LQG-D-GEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWA 515 (599)
T ss_pred EcC-C-CcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEc
Confidence 432 1 222110 01122 379999999999843333332 35566655542121110001122222223358999999
Q ss_pred cCCCceEEE-EcCCcEEEEe
Q 038533 318 PAQPDWLAI-AFSNKMQLLK 336 (337)
Q Consensus 318 ~~~~~l~~~-~~d~~i~iw~ 336 (337)
.++..++.+ ..++...+|.
T Consensus 516 ~~~sL~Vlg~~~~~~~~v~~ 535 (599)
T PRK13613 516 GDSQLVVLGREEGGVQQARY 535 (599)
T ss_pred CCCEEEEEeccCCCCcceEE
Confidence 999755534 2333444453
Done!