BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038535
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 24/184 (13%)
Query: 13 HTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP 72
+ R V+ N+L+ + NSP IHPV N ++ + + S + PN DG+DP
Sbjct: 187 YLRPSFVQFYRCRNVLV-EGVKIINSPMWCIHPVLSENVIIRNIEISS--TGPNNDGIDP 243
Query: 73 D---------CYIESGNGLVAVKSGWDHDGIAMARPSSNIAVR-RVSGTTPTCSGVGIGR 122
+ C ++G+ V +KSG D DG + PS I VR + + + G+ IG
Sbjct: 244 ESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGS 303
Query: 123 EMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYGHPKEGWDPKAIPKISGISFVNVVSVNTT 182
EMSG + NV + +V+M + + LRL + + G + I F++ V+VN +
Sbjct: 304 EMSGGVRNVVARN-NVYMNVERA----LRLKTNSRRGG------YMENIFFIDNVAVNVS 352
Query: 183 KAPV 186
+ +
Sbjct: 353 EEVI 356
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 39/214 (18%)
Query: 3 WDLWWNSTLKHTRGHLVELM--NSSNILIISNLTFCNSPSRTIHPVYCR-NGFVK-GMTV 58
W+L ++ +K + + L+ N S + N++ NSP+ H V+ +GF T+
Sbjct: 135 WELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPN--FHVVFSDGDGFTAWKTTI 192
Query: 59 LSPLSAPNTDGLDPDCY---------IESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVS 109
+P +A NTDG+DP I +G+ VA+K+ + G A R NI++ +
Sbjct: 193 KTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKA---YKGRAETR---NISI--LH 244
Query: 110 GTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYGHPKEGWDPKAIPKIS 169
T G+ IG E G ++NVTV+ L + G LR+ D A ++
Sbjct: 245 NDFGTGHGMSIGSETMG-VYNVTVDDLKMNGTTNG-----LRIKS------DKSAAGVVN 292
Query: 170 GISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNV 203
G+ + NVV N K P+ +I T +E+ NV
Sbjct: 293 GVRYSNVVMKNVAK-PI---VIDTVYEKKEGSNV 322
>pdb|1QE3|A Chain A, Pnb Esterase
Length = 489
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 167 KISGISFVNVVSVNTTKAPVLAGIIG-TQFEEICMKNVSLLVQAPSVKWQCRFVSGFNG 224
K++ V VV++N P G + + F+E N+ LL QA ++KW +S F G
Sbjct: 122 KLAAQGEVIVVTLNYRLGPF--GFLHLSSFDEAYSDNLGLLDQAAALKWVRENISAFGG 178
>pdb|4FL6|A Chain A, Crystal Structure Of The Complex Of The 3-Mbt Repeat
Domain Of L3mbtl3 And Unc1215
pdb|4FL6|B Chain B, Crystal Structure Of The Complex Of The 3-Mbt Repeat
Domain Of L3mbtl3 And Unc1215
Length = 332
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 35 FCNSPSRTIHPV-YCRNGFVKGMTVLSPLSAPNTDGLDPDCYIESGNGLVA 84
+C + S IHPV +C+ T+++P PN D Y+E N L A
Sbjct: 188 WCEASSPHIHPVGWCKE---HRRTLITPPGYPNVKHFSWDKYLEETNSLPA 235
>pdb|3UT1|A Chain A, Crystal Structure Of The 3-Mbt Repeat Domain Of L3mbtl3
Length = 324
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 35 FCNSPSRTIHPV-YCRNGFVKGMTVLSPLSAPNTDGLDPDCYIESGNGLVA 84
+C + S IHPV +C+ T+++P PN D Y+E N L A
Sbjct: 188 WCEASSPHIHPVGWCKE---HRRTLITPPGYPNVKHFSWDKYLEETNSLPA 235
>pdb|1C7J|A Chain A, Pnb Esterase 56c8
Length = 489
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 167 KISGISFVNVVSVNTTKAPVLAGIIG-TQFEEICMKNVSLLVQAPSVKWQCRFVSGFNG 224
K++ V VV++N P G + + F+E N+ LL QA ++KW +S F G
Sbjct: 122 KLAAQGEVIVVTLNYRLGPF--GFMHLSSFDEAYSDNLGLLDQAAALKWVRENISAFGG 178
>pdb|1C7I|A Chain A, Thermophylic Pnb Esterase
Length = 489
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 167 KISGISFVNVVSVNTTKAPVLAGIIG-TQFEEICMKNVSLLVQAPSVKWQCRFVSGFNG 224
K++ V VV++N P G + + F+E N+ LL QA ++KW +S F G
Sbjct: 122 KLAAQGEVIVVTLNYRLGPF--GFMHLSSFDEAYSDNLGLLDQAAALKWVRENISAFGG 178
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 1 MRWDLWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIH--------------PV 46
+ DL+W L G + M +N+++ S T +PS ++ P
Sbjct: 189 LNHDLYWQIDLDVHFGK--QTMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPF 246
Query: 47 YCRNGFVKGMTVLSPLSAPNTDGLDPDCYI 76
Y K M L SA NT L+P+ Y+
Sbjct: 247 YVTTCDNKEMPTLEFKSANNTYTLEPEYYM 276
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 1 MRWDLWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIH--------------PV 46
+ DL+W L G + M +N+++ S T +PS ++ P
Sbjct: 235 LNHDLYWQIDLDVHFGK--QTMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPF 292
Query: 47 YCRNGFVKGMTVLSPLSAPNTDGLDPDCYI 76
Y K M L SA NT L+P+ Y+
Sbjct: 293 YVTTCDNKEMPTLEFKSANNTYTLEPEYYM 322
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,213,018
Number of Sequences: 62578
Number of extensions: 296809
Number of successful extensions: 642
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 636
Number of HSP's gapped (non-prelim): 16
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)