BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038535
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001
PE=1 SV=1
Length = 491
Score = 157 bits (398), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/262 (36%), Positives = 138/262 (52%), Gaps = 44/262 (16%)
Query: 5 LWWN----STLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLS 60
LWW LK+TR +L+ELM S++I ISNLT NSPS +HPVY RN ++G+T+L+
Sbjct: 184 LWWQRFHGGKLKYTRPYLIELMYSADIQ-ISNLTLLNSPSWNVHPVYSRNILIQGITILA 242
Query: 61 PLSAPNTDGLDP---------DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGT 111
P+ +PNTDG++P DCYI SG+ VAVKSGWD GIA P+ + +RR++
Sbjct: 243 PVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCI 302
Query: 112 TPTCSGVGIGREMSGRIFNVTVNHLDVWMQQ----------QGSYKDRLRLYG------- 154
+P + + +G EMSG I +V + + +G Y + + G
Sbjct: 303 SPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMK 362
Query: 155 -----------HPKEGWDPKAIPKISGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNV 203
H +DPKA P I GI++ ++V+ N + A L GI F IC+ NV
Sbjct: 363 WAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENVSMAARLEGIPSDPFTGICISNV 422
Query: 204 S--LLVQAPSVKWQCRFVSGFN 223
+ L +A V W C V G +
Sbjct: 423 TIHLAAKAKKVPWTCTDVEGIS 444
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1
Length = 312
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 18/126 (14%)
Query: 33 LTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDPD---------CYIESGNGLV 83
T N+ S TIHP C + T+++P +PNTDG +P+ G+ +
Sbjct: 38 FTIRNAASWTIHPQGCEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCI 97
Query: 84 AVKSG-----WDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDV 138
AVK+G + D +A R I VR P G+ IG EMSG + +VTV D+
Sbjct: 98 AVKAGKRGPDGEDDHLAETR---GITVRHCL-MQPGHGGLVIGSEMSGGVHDVTVEDCDM 153
Query: 139 WMQQQG 144
+G
Sbjct: 154 IGTDRG 159
>sp|P18192|PGLR1_PECCC Endo-polygalacturonase OS=Pectobacterium carotovorum subsp.
carotovorum GN=peh PE=3 SV=1
Length = 402
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 39/214 (18%)
Query: 3 WDLWWNSTLKHTRGHLVELM--NSSNILIISNLTFCNSPSRTIHPVYCR-NGFVK-GMTV 58
WDL ++ +K + + L+ N S + N++ NSP+ H V+ +GF T+
Sbjct: 161 WDLAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPN--FHVVFSDGDGFTAWKTTI 218
Query: 59 LSPLSAPNTDGLDP---------DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVS 109
+P +A NTDG+DP I +G+ VA+K+ + G + R NI++ +
Sbjct: 219 KTPSTARNTDGIDPMSSKNITIAHSNISTGDDNVAIKA---YKGRSETR---NISI--LH 270
Query: 110 GTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYGHPKEGWDPKAIPKIS 169
T G+ IG E G ++NVTV+ L + G LR+ D A ++
Sbjct: 271 NEFGTGHGMSIGSETMG-VYNVTVDDLIMTGTTNG-----LRIKS------DKSAAGVVN 318
Query: 170 GISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNV 203
G+ + NVV N K P+ +I T +E+ NV
Sbjct: 319 GVRYSNVVMKNVAK-PI---VIDTVYEKKEGSNV 348
>sp|P26509|PGLR2_PECSS Endo-polygalacturonase OS=Pectobacterium sp. (strain SCC3193)
GN=pehA PE=1 SV=1
Length = 402
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 100/214 (46%), Gaps = 39/214 (18%)
Query: 3 WDLWWNSTLKHTRGHLVELM--NSSNILIISNLTFCNSPSRTIHPVYCR-NGFVK-GMTV 58
W+L ++ +K + + L+ N S + N++ NSP+ H V+ +GF T+
Sbjct: 161 WELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPN--FHVVFSDGDGFTAWKTTI 218
Query: 59 LSPLSAPNTDGLDPDCY---------IESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVS 109
+P +A NTDG+DP I +G+ VA+K+ + G A R NI++ +
Sbjct: 219 KTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKA---YKGRAETR---NISI--LH 270
Query: 110 GTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYGHPKEGWDPKAIPKIS 169
T G+ IG E G ++NVTV+ L + G LR+ D A ++
Sbjct: 271 NDFGTGHGMSIGSETMG-VYNVTVDDLKMNGTTNG-----LRIKS------DKSAAGVVN 318
Query: 170 GISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNV 203
G+ + NVV N K P+ +I T +E+ NV
Sbjct: 319 GVRYSNVVMKNVAK-PI---VIDTVYEKKEGSNV 348
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana
GN=At3g15720 PE=1 SV=1
Length = 456
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 6 WWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAP 65
WW K +R ++ S N L +S LT +SP IH C + + + +P S+P
Sbjct: 130 WWEH--KGSRPTALKF-RSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSP 186
Query: 66 NTDGLD---------PDCYIESGNGLVAVKSG 88
NTDG+D DC I +G+ +A+ SG
Sbjct: 187 NTDGIDVGASSNVVIQDCIIATGDDCIAINSG 218
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana
GN=At1g80170 PE=1 SV=1
Length = 444
Score = 38.5 bits (88), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 16/113 (14%)
Query: 6 WWNSTLKHT-----RGHLVEL-MNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVL 59
WW + KH RG L + + + NL +S I CR + G+ V+
Sbjct: 160 WWERSCKHNHSNPCRGAPTALTFHKCKNMRVENLNVIDSQQMHIALTSCRRVTISGLKVI 219
Query: 60 SPLSAPNTDGLDPDCYIESGNGLV----AVKSGWDHDGIAMARPSSNIAVRRV 108
+P ++PNTDG+ +I G+V V +G D I++ + S+ I++ +
Sbjct: 220 APATSPNTDGI----HISVSRGIVIDNTTVSTG--DDCISIVKNSTQISISNI 266
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1
Length = 507
Score = 38.1 bits (87), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 33/124 (26%)
Query: 6 WWNSTLKHTRGHLVE---------LMNSSNILIISNLTFCNSPSRTIHPVY--CRNGFVK 54
WW+ K G V ++ S + + LT NSP H V+ C ++
Sbjct: 164 WWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPE--FHLVFGECDGVKIQ 221
Query: 55 GMTVLSPLSAPNTDGLD---------PDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAV 105
G+ + +P +PNTDG+D C I +G+ VAV +G SSNI +
Sbjct: 222 GIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG-----------SSNITI 270
Query: 106 RRVS 109
+ ++
Sbjct: 271 KDLT 274
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1
Length = 514
Score = 38.1 bits (87), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 65/161 (40%), Gaps = 35/161 (21%)
Query: 6 WWNSTLKHTRGHLVE---------LMNSSNILIISNLTFCNSPSRTIHPVY--CRNGFVK 54
WW K G V ++ S + + LT NSP H V+ C ++
Sbjct: 163 WWAGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPE--FHLVFGECEGVKIQ 220
Query: 55 GMTVLSPLSAPNTDGLD---------PDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAV 105
G+ + +P +PNTDG+D C I +G+ +A+ +G SSNI +
Sbjct: 221 GLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG-----------SSNITI 269
Query: 106 RR-VSGTTPTCSGVGIGREMS-GRIFNVTVNHLDVWMQQQG 144
+ + G S +GR+ S + +V VN Q G
Sbjct: 270 KDLICGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNG 310
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1
Length = 514
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 28 LIISNLTFCNSPSRTIHPVY--CRNGFVKGMTVLSPLSAPNTDGLDPDCYIESGNGLVAV 85
LII L NSP H V+ C + G+++ +P +PNTDG+ D + L
Sbjct: 194 LIIQGLKLMNSPE--FHLVFGNCEGVKIIGISITAPRDSPNTDGI--DIFASKNFHLQKN 249
Query: 86 KSGWDHDGIAMARPSSNIAVRR-VSGTTPTCSGVGIGREMS 125
G D +A+ SSNI + + G S +GRE S
Sbjct: 250 TIGTGDDCVAIGTGSSNIVIEDLICGPGHGISIGSLGRENS 290
>sp|P35338|PGLR2_MAIZE Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1
Length = 410
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 30 ISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGL 70
+S +T NS ++ C+N +K +TV +P +PNTDG+
Sbjct: 174 VSGVTLLNSKFFHMNMYQCKNMLIKDVTVTAPGDSPNTDGI 214
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1
Length = 460
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 4 DLWWNSTLK-------HTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVY--CRNGFVK 54
++WW ++ K T N N L++ NL ++ IH ++ C N
Sbjct: 200 NIWWKNSCKIKPQPPCGTYAPTAVTFNRCNNLVVKNLNI--QDAQQIHVIFQNCINVQAS 257
Query: 55 GMTVLSPLSAPNTDGL 70
+TV +P +PNTDG+
Sbjct: 258 CLTVTAPEDSPNTDGI 273
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana
GN=At2g43860 PE=2 SV=1
Length = 405
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 21 LMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDPDCYIESGN 80
+ + SN + IS LT NS I N + G+ V + ++PNTDG+ ++ES +
Sbjct: 157 VFSGSNNIKISGLTSINSQKFHIVIDNSNNVNIDGVKVSADENSPNTDGI----HVESSH 212
Query: 81 GLVAVKS--GWDHDGIAMARPSSNIAVRRVS---GTTPTCSGVGIGREMSGRIFNVTVNH 135
+ S G D I++ S+N+ ++ + G + +G E G + NVTV++
Sbjct: 213 SVHITNSRIGTGDDCISIGPGSTNVFIQTIRCGPGHGISIGSLGRAEEEQG-VDNVTVSN 271
Query: 136 LDVWMQQQGSYKDRLRLYG 154
+D G R++ +G
Sbjct: 272 VDFMGTNNGV---RIKTWG 287
>sp|P26216|PGLR1_MAIZE Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1
Length = 410
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 30 ISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGL 70
+S +T NS ++ C++ +K +TV +P +PNTDG+
Sbjct: 174 VSGVTLLNSKFFHMNMYRCKDMLIKDVTVTAPGDSPNTDGI 214
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1
Length = 462
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 4 DLWWNSTLKHTRGHLVE------LMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMT 57
+ WW+S+ K + + S LI+S+L+ +S + C++ +
Sbjct: 187 ETWWDSSCKRKKSLPCKSAPTALTFRSCKNLIVSDLSIKDSQKMHLSFDKCQDVIASNLM 246
Query: 58 VLSPLSAPNTDGL 70
V +P +PNTDG+
Sbjct: 247 VTAPEHSPNTDGI 259
>sp|Q8K1L6|CP074_MOUSE Uncharacterized protein C16orf74 homolog OS=Mus musculus PE=2 SV=2
Length = 76
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 69 GLDPDCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRI 128
GL P C G + S +HD + +++V + T PT +G+G+ R+ + +
Sbjct: 2 GLKPSCL--KGFKMCVSSSNNNHDEAPVLN-DKHLSVPNIIITPPTPTGMGLSRDSNKQ- 57
Query: 129 FNVTVNHLDVWMQQQGSYKDRLRL 152
VWM + GSY+D L
Sbjct: 58 ---------VWMDELGSYQDDGEL 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,781,306
Number of Sequences: 539616
Number of extensions: 3697502
Number of successful extensions: 8067
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 8051
Number of HSP's gapped (non-prelim): 23
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)