Query 038535
Match_columns 225
No_of_seqs 152 out of 1081
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 12:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02218 polygalacturonase ADP 100.0 1.9E-42 4.1E-47 312.3 26.4 205 1-223 174-422 (431)
2 PLN02155 polygalacturonase 100.0 3.2E-42 6.9E-47 307.7 26.6 209 1-223 130-382 (394)
3 PLN03003 Probable polygalactur 100.0 5.7E-42 1.2E-46 309.0 26.5 197 13-223 135-379 (456)
4 PLN02188 polygalacturonase/gly 100.0 1.2E-41 2.6E-46 305.0 26.9 210 1-224 138-395 (404)
5 PLN02793 Probable polygalactur 100.0 2.4E-41 5.1E-46 306.3 26.9 210 1-224 159-414 (443)
6 PF00295 Glyco_hydro_28: Glyco 100.0 1.2E-40 2.6E-45 292.9 22.2 205 1-221 76-322 (326)
7 PLN03010 polygalacturonase 100.0 3.2E-38 6.9E-43 282.7 25.4 192 18-223 159-393 (409)
8 COG5434 PGU1 Endopygalactoruna 99.9 4.1E-27 8.9E-32 215.6 16.8 138 14-154 236-392 (542)
9 PLN02218 polygalacturonase ADP 99.7 1.6E-15 3.4E-20 137.6 21.8 177 16-209 147-384 (431)
10 PLN03003 Probable polygalactur 99.7 3.6E-15 7.8E-20 135.4 21.5 185 16-217 104-342 (456)
11 PLN03010 polygalacturonase 99.7 1E-14 2.2E-19 131.4 22.4 185 16-217 130-359 (409)
12 PLN02793 Probable polygalactur 99.7 9.1E-15 2E-19 133.1 21.9 175 17-208 135-369 (443)
13 PLN02155 polygalacturonase 99.7 2E-14 4.4E-19 129.0 22.8 176 17-209 107-339 (394)
14 PLN02188 polygalacturonase/gly 99.7 4E-14 8.6E-19 127.6 22.2 177 17-209 114-350 (404)
15 PF00295 Glyco_hydro_28: Glyco 99.6 5E-14 1.1E-18 124.1 15.8 158 17-180 116-310 (326)
16 PF03718 Glyco_hydro_49: Glyco 99.5 7.2E-13 1.6E-17 120.3 13.4 110 17-142 318-442 (582)
17 COG5434 PGU1 Endopygalactoruna 99.1 5.8E-10 1.2E-14 103.2 10.9 116 17-141 262-398 (542)
18 PF03718 Glyco_hydro_49: Glyco 98.1 4.2E-05 9.2E-10 70.4 11.4 177 15-206 268-513 (582)
19 TIGR03805 beta_helix_1 paralle 97.9 0.00016 3.5E-09 63.5 12.3 103 21-142 59-174 (314)
20 PF12541 DUF3737: Protein of u 97.9 0.00042 9.1E-09 58.7 13.5 32 167-206 192-223 (277)
21 PF12541 DUF3737: Protein of u 97.9 9.2E-05 2E-09 62.6 9.5 111 14-154 89-219 (277)
22 PF13229 Beta_helix: Right han 97.8 0.00013 2.8E-09 56.1 7.8 102 19-142 3-113 (158)
23 smart00656 Amb_all Amb_all dom 97.6 0.0006 1.3E-08 55.7 10.0 88 41-140 32-143 (190)
24 TIGR03808 RR_plus_rpt_1 twin-a 97.4 0.0023 5E-08 58.3 11.8 103 13-123 132-270 (455)
25 PF00544 Pec_lyase_C: Pectate 97.0 0.0025 5.5E-08 52.4 7.3 14 47-60 44-57 (200)
26 COG3866 PelB Pectate lyase [Ca 96.8 0.019 4E-07 49.8 11.0 119 19-142 95-230 (345)
27 PF12708 Pectate_lyase_3: Pect 96.8 0.004 8.7E-08 50.9 6.8 34 27-61 94-133 (225)
28 TIGR03805 beta_helix_1 paralle 96.7 0.025 5.4E-07 49.8 11.5 107 17-141 78-203 (314)
29 TIGR03808 RR_plus_rpt_1 twin-a 96.7 0.038 8.3E-07 50.5 12.9 89 16-121 106-209 (455)
30 PF13229 Beta_helix: Right han 96.7 0.013 2.9E-07 44.8 8.9 112 15-142 22-138 (158)
31 PF05048 NosD: Periplasmic cop 96.5 0.047 1E-06 45.6 11.3 98 19-141 38-144 (236)
32 PF12708 Pectate_lyase_3: Pect 96.1 0.23 5E-06 40.4 13.2 31 103-140 166-196 (225)
33 smart00656 Amb_all Amb_all dom 95.8 0.3 6.5E-06 39.8 12.4 114 17-141 32-166 (190)
34 PF00544 Pec_lyase_C: Pectate 95.7 0.08 1.7E-06 43.5 8.6 98 21-141 42-158 (200)
35 COG3866 PelB Pectate lyase [Ca 95.6 0.35 7.5E-06 42.2 12.3 15 43-57 95-109 (345)
36 PF05048 NosD: Periplasmic cop 95.3 0.31 6.8E-06 40.6 11.1 103 17-144 14-125 (236)
37 PLN02480 Probable pectinestera 91.9 2.2 4.7E-05 38.1 10.5 104 23-141 130-252 (343)
38 PLN02773 pectinesterase 89.8 5.9 0.00013 35.0 11.1 105 23-142 100-213 (317)
39 PLN02773 pectinesterase 85.1 13 0.00029 32.8 10.5 77 43-140 96-182 (317)
40 PF09251 PhageP22-tail: Salmon 81.1 32 0.00069 31.7 11.3 40 12-55 142-181 (549)
41 PF09251 PhageP22-tail: Salmon 80.6 27 0.00058 32.2 10.7 96 47-154 262-366 (549)
42 PF01696 Adeno_E1B_55K: Adenov 78.5 24 0.00052 32.0 9.8 99 23-137 119-221 (386)
43 PLN02708 Probable pectinestera 77.8 42 0.0009 32.1 11.7 39 102-140 400-448 (553)
44 PRK10123 wcaM putative colanic 77.7 8.3 0.00018 33.7 6.4 44 17-61 260-313 (464)
45 COG3420 NosD Nitrous oxidase a 76.3 58 0.0013 29.2 12.0 71 15-87 68-179 (408)
46 PLN02665 pectinesterase family 74.0 40 0.00086 30.5 10.0 40 102-142 229-273 (366)
47 PRK10531 acyl-CoA thioesterase 72.8 64 0.0014 29.7 11.2 42 21-63 202-252 (422)
48 PLN02497 probable pectinestera 67.8 90 0.002 27.8 11.1 40 102-141 192-239 (331)
49 PLN02301 pectinesterase/pectin 67.7 94 0.002 29.7 11.5 41 101-141 392-438 (548)
50 PLN02682 pectinesterase family 67.6 96 0.0021 28.1 11.8 107 20-141 158-280 (369)
51 PLN02745 Putative pectinestera 67.2 1.2E+02 0.0027 29.2 12.2 41 101-141 441-487 (596)
52 PLN02634 probable pectinestera 67.0 93 0.002 28.0 10.7 40 102-141 224-266 (359)
53 PLN02480 Probable pectinestera 66.9 60 0.0013 29.0 9.5 17 45-61 128-144 (343)
54 PF07602 DUF1565: Protein of u 66.5 82 0.0018 26.8 10.3 71 100-178 150-224 (246)
55 PLN02506 putative pectinestera 66.4 89 0.0019 29.8 11.0 40 102-141 389-434 (537)
56 PLN02698 Probable pectinestera 66.0 1E+02 0.0022 29.1 11.2 106 22-142 267-386 (497)
57 PLN02708 Probable pectinestera 65.4 58 0.0012 31.1 9.6 19 44-62 325-343 (553)
58 PLN02176 putative pectinestera 64.0 1.1E+02 0.0024 27.4 10.6 40 102-141 198-246 (340)
59 PLN02304 probable pectinestera 64.0 1.1E+02 0.0024 27.8 10.7 14 128-141 274-287 (379)
60 PLN02506 putative pectinestera 63.9 59 0.0013 30.9 9.3 20 43-62 313-332 (537)
61 PLN03043 Probable pectinestera 62.9 1.4E+02 0.0031 28.4 12.2 40 101-140 382-427 (538)
62 PLN02217 probable pectinestera 62.5 1.2E+02 0.0026 29.8 11.3 104 23-141 335-452 (670)
63 PF01095 Pectinesterase: Pecti 61.8 43 0.00093 29.2 7.6 13 48-60 86-98 (298)
64 PLN02682 pectinesterase family 61.4 1E+02 0.0022 27.9 10.0 19 44-62 158-176 (369)
65 TIGR03804 para_beta_helix para 61.0 30 0.00065 20.5 4.8 40 19-60 2-41 (44)
66 PLN02713 Probable pectinestera 61.0 74 0.0016 30.5 9.5 16 46-61 337-352 (566)
67 PLN02416 probable pectinestera 60.6 1.5E+02 0.0032 28.4 11.3 14 128-141 419-432 (541)
68 PLN02201 probable pectinestera 59.3 1.1E+02 0.0024 29.1 10.2 18 45-62 289-306 (520)
69 PLN02314 pectinesterase 59.3 1.5E+02 0.0033 28.5 11.4 42 101-142 434-481 (586)
70 PLN02916 pectinesterase family 59.0 97 0.0021 29.3 9.7 17 46-62 274-290 (502)
71 PF01095 Pectinesterase: Pecti 59.0 35 0.00075 29.8 6.5 103 23-141 85-202 (298)
72 PLN02995 Probable pectinestera 58.4 1.7E+02 0.0036 28.0 11.3 40 101-140 381-426 (539)
73 PLN02484 probable pectinestera 58.4 1.8E+02 0.0039 28.1 11.8 41 101-141 429-475 (587)
74 PLN02916 pectinesterase family 57.8 1.7E+02 0.0037 27.6 11.4 106 21-141 273-392 (502)
75 PLN02176 putative pectinestera 57.8 1.4E+02 0.0031 26.7 12.4 18 45-62 118-135 (340)
76 PLN02170 probable pectinestera 57.6 1.6E+02 0.0034 28.1 10.9 42 101-142 382-428 (529)
77 PLN02671 pectinesterase 56.9 1.5E+02 0.0033 26.7 11.1 40 102-141 228-270 (359)
78 PLN02304 probable pectinestera 55.9 1.5E+02 0.0031 27.0 10.0 18 45-62 158-175 (379)
79 PLN02432 putative pectinestera 55.8 1.4E+02 0.0031 26.1 11.5 16 46-61 91-106 (293)
80 PLN02745 Putative pectinestera 55.6 1.1E+02 0.0024 29.5 9.7 74 45-139 368-451 (596)
81 PF03211 Pectate_lyase: Pectat 55.5 34 0.00074 28.5 5.5 36 49-88 61-104 (215)
82 PLN02488 probable pectinestera 55.3 1.4E+02 0.003 28.2 10.1 16 47-62 282-297 (509)
83 PLN02468 putative pectinestera 55.2 89 0.0019 29.9 9.0 16 46-61 342-357 (565)
84 smart00710 PbH1 Parallel beta- 54.8 19 0.0004 17.9 2.7 22 101-122 2-23 (26)
85 PLN02468 putative pectinestera 54.7 2E+02 0.0044 27.6 11.7 106 21-141 341-460 (565)
86 PRK10531 acyl-CoA thioesterase 54.5 1.6E+02 0.0034 27.2 10.1 19 44-62 201-219 (422)
87 PLN02197 pectinesterase 54.5 1.1E+02 0.0023 29.6 9.4 17 45-61 360-376 (588)
88 PLN02416 probable pectinestera 54.3 96 0.0021 29.6 9.0 19 44-62 312-330 (541)
89 PLN02201 probable pectinestera 54.2 2E+02 0.0043 27.3 12.1 106 21-141 289-408 (520)
90 PLN02671 pectinesterase 54.0 1.4E+02 0.003 27.0 9.5 18 44-61 149-166 (359)
91 PLN03043 Probable pectinestera 54.0 1E+02 0.0022 29.3 9.2 20 43-62 307-326 (538)
92 PLN02301 pectinesterase/pectin 53.1 1.1E+02 0.0024 29.2 9.2 17 45-61 319-335 (548)
93 PLN02217 probable pectinestera 52.2 91 0.002 30.6 8.6 17 46-62 334-350 (670)
94 PLN02713 Probable pectinestera 52.1 1.8E+02 0.004 27.9 10.5 106 21-141 336-455 (566)
95 PLN02933 Probable pectinestera 51.6 2.2E+02 0.0048 27.1 11.6 39 102-140 375-419 (530)
96 PLN02698 Probable pectinestera 50.5 1.1E+02 0.0024 28.9 8.7 19 44-62 265-283 (497)
97 PLN02665 pectinesterase family 50.3 2E+02 0.0042 26.1 13.7 20 43-62 148-167 (366)
98 PLN02990 Probable pectinestera 50.3 1.2E+02 0.0027 29.1 9.1 16 47-62 345-360 (572)
99 PLN02484 probable pectinestera 50.1 1.1E+02 0.0023 29.6 8.7 19 44-62 355-373 (587)
100 PLN02933 Probable pectinestera 50.0 1.3E+02 0.0029 28.6 9.2 18 45-62 301-318 (530)
101 PRK10123 wcaM putative colanic 49.5 27 0.00058 30.7 4.1 15 195-209 300-314 (464)
102 PLN02197 pectinesterase 49.5 2.1E+02 0.0046 27.6 10.5 106 21-141 360-480 (588)
103 PLN02314 pectinesterase 48.4 1.3E+02 0.0028 29.0 9.0 18 45-62 361-378 (586)
104 PLN02488 probable pectinestera 48.3 2.5E+02 0.0053 26.7 11.4 105 22-141 281-399 (509)
105 PLN02432 putative pectinestera 48.1 1.9E+02 0.0041 25.3 12.3 104 22-140 91-204 (293)
106 PLN02313 Pectinesterase/pectin 47.3 1.4E+02 0.003 28.8 9.0 16 46-61 359-374 (587)
107 PLN02995 Probable pectinestera 46.9 1.4E+02 0.0031 28.4 8.9 18 45-62 308-325 (539)
108 PLN02990 Probable pectinestera 45.6 2.9E+02 0.0062 26.6 11.6 106 22-142 344-463 (572)
109 PLN02634 probable pectinestera 44.3 2.1E+02 0.0046 25.8 9.1 18 45-62 145-162 (359)
110 PLN02497 probable pectinestera 43.2 2.4E+02 0.0052 25.1 11.4 18 45-62 111-128 (331)
111 PLN02313 Pectinesterase/pectin 39.7 3.6E+02 0.0078 26.1 11.6 107 21-142 358-478 (587)
112 PF07602 DUF1565: Protein of u 37.6 2.6E+02 0.0056 23.8 8.7 43 102-144 123-166 (246)
113 PF14592 Chondroitinas_B: Chon 32.4 4.1E+02 0.0089 24.6 9.4 124 14-142 213-364 (425)
114 PLN02170 probable pectinestera 29.7 5E+02 0.011 24.8 14.7 20 43-62 307-326 (529)
115 PF05342 Peptidase_M26_N: M26 28.4 79 0.0017 27.0 3.7 17 125-141 211-227 (250)
116 PF01696 Adeno_E1B_55K: Adenov 22.9 3.4E+02 0.0074 24.8 6.8 11 50-60 122-132 (386)
No 1
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.9e-42 Score=312.27 Aligned_cols=205 Identities=18% Similarity=0.286 Sum_probs=176.4
Q ss_pred CcccccccCC---CCCCCceeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCCceecc-----
Q 038535 1 MRWDLWWNST---LKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP----- 72 (225)
Q Consensus 1 ~wW~~~~~~~---~~~~rp~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~----- 72 (225)
.||+...... ....||++|.|++|+|++ |+||+|+|||+|++++.+|+||.|+|++|.++.+++||||||+
T Consensus 174 ~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~-I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~n 252 (431)
T PLN02218 174 TWWQNSCKRNKAKPCTKAPTALTFYNSKSLI-VKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQN 252 (431)
T ss_pred hhhhcccccCCcCccCcCCEEEEEEccccEE-EeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccce
Confidence 4997654221 135799999999999999 9999999999999999999999999999999888999999999
Q ss_pred ----cceeeeCCceEEeecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccc----cCcEEeEEEEeeEEEcCCC-
Q 038535 73 ----DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREM----SGRIFNVTVNHLDVWMQQQ- 143 (225)
Q Consensus 73 ----~c~i~~gDD~i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~----~~~v~ni~~~n~~~~~~~~- 143 (225)
||+|.+|||||+||++ ++||+|+||+|..+ |||+|||+. .+.|+||+|+||+|.++.+
T Consensus 253 V~I~n~~I~tGDDcIaIksg-----------s~nI~I~n~~c~~G--HGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nG 319 (431)
T PLN02218 253 IRVSNSIIGTGDDCISIESG-----------SQNVQINDITCGPG--HGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNG 319 (431)
T ss_pred EEEEccEEecCCceEEecCC-----------CceEEEEeEEEECC--CCEEECcCCCCCCCceEEEEEEEccEEecCCcc
Confidence 9999999999999996 79999999999754 899999996 3579999999999999875
Q ss_pred ---------CcEEEeEEEee-------cC---CCCcCC-------CCCCcEEeEEEEEEEEeCCC-ceeEEEecCCCCee
Q 038535 144 ---------GSYKDRLRLYG-------HP---KEGWDP-------KAIPKISGISFVNVVSVNTT-KAPVLAGIIGTQFE 196 (225)
Q Consensus 144 ---------Gg~v~nI~~~~-------~~---~~~~~~-------~~~~~i~~It~~ni~~~~~~-~~~~i~g~~~~~v~ 196 (225)
+|.|+||+|++ .| ++.|.+ ...+.|+||+|+||+++.+. .++.|.|+++.||+
T Consensus 320 vRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~ 399 (431)
T PLN02218 320 VRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNISGTSASDVAITFNCSKNYPCQ 399 (431)
T ss_pred eEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEEEEeEEEEecCCcEEEEEECCCCCEe
Confidence 37899998884 22 344532 23458999999999999764 58899999999999
Q ss_pred cEEEEeEEEEecCCCcceEEEeeEeec
Q 038535 197 EICMKNVSLLVQAPSVKWQCRFVSGFN 223 (225)
Q Consensus 197 ~i~~~Nv~i~~~~~~~~~~c~~v~g~~ 223 (225)
||+|+||.+.+.+ -.|.+|+|..
T Consensus 400 nI~l~nV~i~~~~----~~c~n~~~~~ 422 (431)
T PLN02218 400 GIVLDNVNIKGGK----ATCTNANVVD 422 (431)
T ss_pred eEEEEeEEEECCe----eeEEEeeEEE
Confidence 9999999998643 6799999875
No 2
>PLN02155 polygalacturonase
Probab=100.00 E-value=3.2e-42 Score=307.66 Aligned_cols=209 Identities=20% Similarity=0.276 Sum_probs=179.9
Q ss_pred CcccccccCCCCCCCceeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCCceecc--------
Q 038535 1 MRWDLWWNSTLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP-------- 72 (225)
Q Consensus 1 ~wW~~~~~~~~~~~rp~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~-------- 72 (225)
.||++.........||++|.|.+|++++ |+|++++|||+|++++..|+||+|++++|.++.+++||||||+
T Consensus 130 ~ww~~~~~~~~~~~~p~~i~~~~~~nv~-i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I 208 (394)
T PLN02155 130 GFWSCRKSGQNCPPGVRSISFNSAKDVI-ISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTF 208 (394)
T ss_pred eEEEcccCCCCCCCcccceeEEEeeeEE-EECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEE
Confidence 4887654433334578999999999999 9999999999999999999999999999999988999999999
Q ss_pred -cceeeeCCceEEeecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEecc----ccCcEEeEEEEeeEEEcCCC----
Q 038535 73 -DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGRE----MSGRIFNVTVNHLDVWMQQQ---- 143 (225)
Q Consensus 73 -~c~i~~gDD~i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~----~~~~v~ni~~~n~~~~~~~~---- 143 (225)
||+|.+|||||+||++ ++||+|+||+|..+ |||+|||+ +.+.|+||+|+||+|.++.+
T Consensus 209 ~~~~I~~gDDcIaik~g-----------s~nI~I~n~~c~~G--hGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirI 275 (394)
T PLN02155 209 TGSTVQTGDDCVAIGPG-----------TRNFLITKLACGPG--HGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRI 275 (394)
T ss_pred EeeEEecCCceEEcCCC-----------CceEEEEEEEEECC--ceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEE
Confidence 9999999999999996 79999999999865 99999997 47889999999999998754
Q ss_pred -------CcEEEeEEEeec-------C---CCCcCCC--------CCCcEEeEEEEEEEEeCCC-ceeEEEecCCCCeec
Q 038535 144 -------GSYKDRLRLYGH-------P---KEGWDPK--------AIPKISGISFVNVVSVNTT-KAPVLAGIIGTQFEE 197 (225)
Q Consensus 144 -------Gg~v~nI~~~~~-------~---~~~~~~~--------~~~~i~~It~~ni~~~~~~-~~~~i~g~~~~~v~~ 197 (225)
||.|+||+|++. | ++.|.+. ..+.|+||+|+||+++.+. .++.|.|+++.||+|
T Consensus 276 KT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~ 355 (394)
T PLN02155 276 KSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTG 355 (394)
T ss_pred EEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEE
Confidence 578999998842 2 3445321 1248999999999999864 588999999999999
Q ss_pred EEEEeEEEEecCCC-cceEEEeeEeec
Q 038535 198 ICMKNVSLLVQAPS-VKWQCRFVSGFN 223 (225)
Q Consensus 198 i~~~Nv~i~~~~~~-~~~~c~~v~g~~ 223 (225)
|+|+||.++.+.+. ..+.|.+++|..
T Consensus 356 I~l~nv~i~~~~~~~~~~~C~n~~G~~ 382 (394)
T PLN02155 356 ITLQDIKLTYNKGTPATSFCFNAVGKS 382 (394)
T ss_pred EEEEeeEEEecCCCccCcEEeccEeEE
Confidence 99999999987653 579999999974
No 3
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=5.7e-42 Score=309.02 Aligned_cols=197 Identities=23% Similarity=0.390 Sum_probs=173.0
Q ss_pred CCCceeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCCceecc---------cceeeeCCceE
Q 038535 13 HTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP---------DCYIESGNGLV 83 (225)
Q Consensus 13 ~~rp~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~---------~c~i~~gDD~i 83 (225)
..||++|.|.+|+|+. |+|++++|||+|++++..|++|+|++++|.++.+++||||||+ ||+|.+|||||
T Consensus 135 ~~rP~~l~f~~~~nv~-I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCI 213 (456)
T PLN03003 135 GSRPTALKFRSCNNLR-LSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCI 213 (456)
T ss_pred cCCceEEEEEecCCcE-EeCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeE
Confidence 3699999999999999 9999999999999999999999999999999988999999999 99999999999
Q ss_pred EeecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEecccc----CcEEeEEEEeeEEEcCCC----------CcEEEe
Q 038535 84 AVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMS----GRIFNVTVNHLDVWMQQQ----------GSYKDR 149 (225)
Q Consensus 84 ~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~----~~v~ni~~~n~~~~~~~~----------Gg~v~n 149 (225)
+||++ ++||+|+||+|..+ |||+|||+.. +.|+||+|+||+|.++.+ +|.++|
T Consensus 214 aiksg-----------s~NI~I~n~~c~~G--HGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~n 280 (456)
T PLN03003 214 AINSG-----------TSNIHISGIDCGPG--HGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARM 280 (456)
T ss_pred EeCCC-----------CccEEEEeeEEECC--CCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEE
Confidence 99996 79999999999864 9999999964 459999999999999876 368999
Q ss_pred EEEee-------cC---CCCcCC----------CCCCcEEeEEEEEEEEeCCC-ceeEEEecCCCCeecEEEEeEEEEec
Q 038535 150 LRLYG-------HP---KEGWDP----------KAIPKISGISFVNVVSVNTT-KAPVLAGIIGTQFEEICMKNVSLLVQ 208 (225)
Q Consensus 150 I~~~~-------~~---~~~~~~----------~~~~~i~~It~~ni~~~~~~-~~~~i~g~~~~~v~~i~~~Nv~i~~~ 208 (225)
|+|++ .| ++.|.+ ...+.|+||+|+||+++.+. .++.|.|+++.||+||+|+||.++..
T Consensus 281 Itf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~ 360 (456)
T PLN03003 281 ITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETA 360 (456)
T ss_pred EEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEec
Confidence 99984 23 445531 12358999999999998654 58899999999999999999999876
Q ss_pred C-C---CcceEEEeeEeec
Q 038535 209 A-P---SVKWQCRFVSGFN 223 (225)
Q Consensus 209 ~-~---~~~~~c~~v~g~~ 223 (225)
. + +..+.|.||+|..
T Consensus 361 ~~g~~~~~~~~C~Nv~G~~ 379 (456)
T PLN03003 361 SSGSGQVAQGQCLNVRGAS 379 (456)
T ss_pred CCCCCCccCcEEecccccc
Confidence 3 2 3579999999875
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.2e-41 Score=305.03 Aligned_cols=210 Identities=20% Similarity=0.297 Sum_probs=179.2
Q ss_pred Cccccccc--CCCCCCCceeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCCceecc------
Q 038535 1 MRWDLWWN--STLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP------ 72 (225)
Q Consensus 1 ~wW~~~~~--~~~~~~rp~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~------ 72 (225)
.||+.... ......||++|.|.+|+|+. |+|++|+|||+|++++..|++|+|++++|.++.+++||||||+
T Consensus 138 ~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~-i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV 216 (404)
T PLN02188 138 AAWPFNKCPIRKDCKLLPTSVKFVNMNNTV-VRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGV 216 (404)
T ss_pred ccccccccccCCCCCcCceEEEEEeeeeEE-EeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccE
Confidence 48875421 22345799999999999999 9999999999999999999999999999999888999999999
Q ss_pred ---cceeeeCCceEEeecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEec----cccCcEEeEEEEeeEEEcCCC--
Q 038535 73 ---DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGR----EMSGRIFNVTVNHLDVWMQQQ-- 143 (225)
Q Consensus 73 ---~c~i~~gDD~i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs----~~~~~v~ni~~~n~~~~~~~~-- 143 (225)
||+|.+|||||++|++ ++||+|+||.|..+ |||+||| |+.+.|+||+|+||+|.++.+
T Consensus 217 ~I~n~~I~~GDDcIaiksg-----------~~nI~I~n~~c~~g--hGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~Gi 283 (404)
T PLN02188 217 YISDSRIGTGDDCISIGQG-----------NSQVTITRIRCGPG--HGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGI 283 (404)
T ss_pred EEEeeEEeCCCcEEEEccC-----------CccEEEEEEEEcCC--CcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEE
Confidence 9999999999999996 68999999999754 9999999 777899999999999999874
Q ss_pred ----------CcEEEeEEEee-------cC---CCCcCC--------CCCCcEEeEEEEEEEEeCCC-ceeEEEecCCCC
Q 038535 144 ----------GSYKDRLRLYG-------HP---KEGWDP--------KAIPKISGISFVNVVSVNTT-KAPVLAGIIGTQ 194 (225)
Q Consensus 144 ----------Gg~v~nI~~~~-------~~---~~~~~~--------~~~~~i~~It~~ni~~~~~~-~~~~i~g~~~~~ 194 (225)
+|.++||+|++ .| ++.|.+ ...+.|+||+|+||+++.+. .++.|.|+++.|
T Consensus 284 riKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~p 363 (404)
T PLN02188 284 RIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVP 363 (404)
T ss_pred EEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCC
Confidence 26788888884 22 234432 12358999999999998864 578999999999
Q ss_pred eecEEEEeEEEEecCC--CcceEEEeeEeecC
Q 038535 195 FEEICMKNVSLLVQAP--SVKWQCRFVSGFNG 224 (225)
Q Consensus 195 v~~i~~~Nv~i~~~~~--~~~~~c~~v~g~~~ 224 (225)
|+||+|+||+++.+.+ +..+.|.+|+|...
T Consensus 364 c~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~ 395 (404)
T PLN02188 364 CQGVYLQDVHLDLSSGEGGTSSSCENVRAKYI 395 (404)
T ss_pred EeeEEEEeeEEEecCCCCCcCceeEcceeEEc
Confidence 9999999999997744 34699999998753
No 5
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=2.4e-41 Score=306.31 Aligned_cols=210 Identities=20% Similarity=0.310 Sum_probs=178.9
Q ss_pred CcccccccC---CCCCCCceeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCCceecc-----
Q 038535 1 MRWDLWWNS---TLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP----- 72 (225)
Q Consensus 1 ~wW~~~~~~---~~~~~rp~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~----- 72 (225)
.||+..... .....||++|.|.+|+|++ |+|++|+|||+|++++.+|+||+|++++|.++..++||||||+
T Consensus 159 ~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~-v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~n 237 (443)
T PLN02793 159 EWWAQSCKINHTNPCRHAPTAITFHKCKDLR-VENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRG 237 (443)
T ss_pred ccccccccccCCCCccCCceEEEEEeeccEE-EECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccce
Confidence 488754321 1234699999999999999 9999999999999999999999999999999988899999999
Q ss_pred ----cceeeeCCceEEeecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEecc----ccCcEEeEEEEeeEEEcCCC-
Q 038535 73 ----DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGRE----MSGRIFNVTVNHLDVWMQQQ- 143 (225)
Q Consensus 73 ----~c~i~~gDD~i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~----~~~~v~ni~~~n~~~~~~~~- 143 (225)
||+|+++||||++|++ ++||+|+||+|..+ |||+|||+ +.+.|+||+|+||+|.++.+
T Consensus 238 V~I~n~~I~~gDDcIaik~~-----------s~nI~I~n~~c~~G--hGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~G 304 (443)
T PLN02793 238 VVIKDSIVRTGDDCISIVGN-----------SSRIKIRNIACGPG--HGISIGSLGKSNSWSEVRDITVDGAFLSNTDNG 304 (443)
T ss_pred EEEEeCEEeCCCCeEEecCC-----------cCCEEEEEeEEeCC--ccEEEecccCcCCCCcEEEEEEEccEEeCCCce
Confidence 9999999999999985 79999999999865 89999997 45789999999999999875
Q ss_pred ---------CcEEEeEEEeec-------C---CCCcCC--------CCCCcEEeEEEEEEEEeCCC-ceeEEEecCCCCe
Q 038535 144 ---------GSYKDRLRLYGH-------P---KEGWDP--------KAIPKISGISFVNVVSVNTT-KAPVLAGIIGTQF 195 (225)
Q Consensus 144 ---------Gg~v~nI~~~~~-------~---~~~~~~--------~~~~~i~~It~~ni~~~~~~-~~~~i~g~~~~~v 195 (225)
+|.|+||+|++. | ++.|.. ...+.|+||+|+||+++.+. .++.|.|+++.||
T Consensus 305 irIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc 384 (443)
T PLN02793 305 VRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPC 384 (443)
T ss_pred EEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCE
Confidence 378999998841 2 344532 22348999999999999853 5889999999999
Q ss_pred ecEEEEeEEEEecCC-CcceEEEeeEeecC
Q 038535 196 EEICMKNVSLLVQAP-SVKWQCRFVSGFNG 224 (225)
Q Consensus 196 ~~i~~~Nv~i~~~~~-~~~~~c~~v~g~~~ 224 (225)
+||+|+||+++...+ ...+.|.+++|...
T Consensus 385 ~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~ 414 (443)
T PLN02793 385 EGLYLEDVQLLSSTGDFTESFCWEAYGSSS 414 (443)
T ss_pred eeEEEEeeEEEecCCCCCCcEEEccEEeEC
Confidence 999999999997754 35689999999754
No 6
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=1.2e-40 Score=292.88 Aligned_cols=205 Identities=30% Similarity=0.474 Sum_probs=173.0
Q ss_pred Cccccccc-CCCCCCCceeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCCceecc-------
Q 038535 1 MRWDLWWN-STLKHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP------- 72 (225)
Q Consensus 1 ~wW~~~~~-~~~~~~rp~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~------- 72 (225)
.||+.... ......||++|.|.+|++++ |+|++++|||+|++++.+|+||++++++|.++...+|+||||+
T Consensus 76 ~w~~~~~~~~~~~~~rp~~i~~~~~~~~~-i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~ 154 (326)
T PF00295_consen 76 AWWDGSGDANNNGQRRPRLIRFNNCKNVT-IEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVT 154 (326)
T ss_dssp GTCSSCTTHCCSSSSSSESEEEEEEEEEE-EESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEE
T ss_pred hhhccccccccccccccceeeeeeecceE-EEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEE
Confidence 48887654 23456899999999999999 9999999999999999999999999999999877899999999
Q ss_pred --cceeeeCCceEEeecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccC----cEEeEEEEeeEEEcCCC---
Q 038535 73 --DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSG----RIFNVTVNHLDVWMQQQ--- 143 (225)
Q Consensus 73 --~c~i~~gDD~i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~----~v~ni~~~n~~~~~~~~--- 143 (225)
||+|+++||||++|++ ..||+|+||+|+.+ |||+|||+..+ .|+||+|+||+|.++.+
T Consensus 155 I~n~~i~~gDD~Iaiks~-----------~~ni~v~n~~~~~g--hGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~ 221 (326)
T PF00295_consen 155 IENCFIDNGDDCIAIKSG-----------SGNILVENCTCSGG--HGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIR 221 (326)
T ss_dssp EESEEEESSSESEEESSE-----------ECEEEEESEEEESS--SEEEEEEESSSSE--EEEEEEEEEEEEESESEEEE
T ss_pred EEEeecccccCccccccc-----------ccceEEEeEEEecc--ccceeeeccCCccccEEEeEEEEEEEeeccceEEE
Confidence 9999999999999996 45999999999875 99999999765 59999999999999865
Q ss_pred -------CcEEEeEEEeec-------C---CCCcC-------CCCCCcEEeEEEEEEEEeCCC-ceeEEEecCCCCeecE
Q 038535 144 -------GSYKDRLRLYGH-------P---KEGWD-------PKAIPKISGISFVNVVSVNTT-KAPVLAGIIGTQFEEI 198 (225)
Q Consensus 144 -------Gg~v~nI~~~~~-------~---~~~~~-------~~~~~~i~~It~~ni~~~~~~-~~~~i~g~~~~~v~~i 198 (225)
+|.|+||+|++. | ++.|. +...+.|+||+|+||+++... .++.|.|.++.||+||
T Consensus 222 iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni 301 (326)
T PF00295_consen 222 IKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNI 301 (326)
T ss_dssp EEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEE
T ss_pred EEEecccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeE
Confidence 479999999842 1 12222 123348999999999999876 6899999999999999
Q ss_pred EEEeEEEEecCCCcceEEEeeEe
Q 038535 199 CMKNVSLLVQAPSVKWQCRFVSG 221 (225)
Q Consensus 199 ~~~Nv~i~~~~~~~~~~c~~v~g 221 (225)
+|+||+++. +..++.|.+++.
T Consensus 302 ~f~nv~i~~--g~~~~~c~nv~~ 322 (326)
T PF00295_consen 302 TFENVNITG--GKKPAQCKNVPS 322 (326)
T ss_dssp EEEEEEEES--SBSESEEBSCCT
T ss_pred EEEeEEEEc--CCcCeEEECCCC
Confidence 999999998 256899999864
No 7
>PLN03010 polygalacturonase
Probab=100.00 E-value=3.2e-38 Score=282.70 Aligned_cols=192 Identities=22% Similarity=0.403 Sum_probs=166.2
Q ss_pred eEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCCceecc---------cceeeeCCceEEeecC
Q 038535 18 LVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP---------DCYIESGNGLVAVKSG 88 (225)
Q Consensus 18 ~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~---------~c~i~~gDD~i~iks~ 88 (225)
+|.|.+|+|++ |+||+|+|||+|++++..|++|+|++++|.++..++||||||+ ||+|.++||||+||++
T Consensus 159 ~l~~~~~~nv~-v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksg 237 (409)
T PLN03010 159 ALHISKCDNLT-INGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG 237 (409)
T ss_pred eEEEEeecCeE-EeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCC
Confidence 68999999999 9999999999999999999999999999999887899999999 9999999999999997
Q ss_pred CCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccC----cEEeEEEEeeEEEcCCC----------CcEEEeEEEee
Q 038535 89 WDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSG----RIFNVTVNHLDVWMQQQ----------GSYKDRLRLYG 154 (225)
Q Consensus 89 ~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~----~v~ni~~~n~~~~~~~~----------Gg~v~nI~~~~ 154 (225)
+.|+.|+++.|.. +|||+|||+..+ .|+||+|+||+|.++.+ +|.|+||+|++
T Consensus 238 -----------s~ni~I~~~~C~~--gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~n 304 (409)
T PLN03010 238 -----------SSNINITQINCGP--GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFEN 304 (409)
T ss_pred -----------CCcEEEEEEEeEC--cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEe
Confidence 5678888888875 489999999554 49999999999999875 36899998884
Q ss_pred -------cC---CCCcCC--------CCCCcEEeEEEEEEEEeCCC-ceeEEEecCCCCeecEEEEeEEEEecCC-Ccce
Q 038535 155 -------HP---KEGWDP--------KAIPKISGISFVNVVSVNTT-KAPVLAGIIGTQFEEICMKNVSLLVQAP-SVKW 214 (225)
Q Consensus 155 -------~~---~~~~~~--------~~~~~i~~It~~ni~~~~~~-~~~~i~g~~~~~v~~i~~~Nv~i~~~~~-~~~~ 214 (225)
.| ++.|.. .....|+||+|+||+++.+. .++.|.|++..||+||+|+||.++.+.+ ++.+
T Consensus 305 I~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~ 384 (409)
T PLN03010 305 ITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKV 384 (409)
T ss_pred EEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccce
Confidence 22 234432 22338999999999998654 6899999999999999999999998754 4679
Q ss_pred EEEeeEeec
Q 038535 215 QCRFVSGFN 223 (225)
Q Consensus 215 ~c~~v~g~~ 223 (225)
.|.+++|..
T Consensus 385 ~C~nv~g~~ 393 (409)
T PLN03010 385 ECQNVEGES 393 (409)
T ss_pred EeeCccccc
Confidence 999999864
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=4.1e-27 Score=215.65 Aligned_cols=138 Identities=32% Similarity=0.464 Sum_probs=125.7
Q ss_pred CCceeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCCceecc---------cceeeeCCceEE
Q 038535 14 TRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP---------DCYIESGNGLVA 84 (225)
Q Consensus 14 ~rp~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~---------~c~i~~gDD~i~ 84 (225)
.||+++.|..|+||+ ++|+++.++|.|++|+..|+|++++|++|.+.... |+||||+ +|+|.+|||||+
T Consensus 236 ~rp~~~~l~~c~NV~-~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I~ 313 (542)
T COG5434 236 VRPRTVVLKGCRNVL-LEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIA 313 (542)
T ss_pred cCCceEEEeccceEE-EeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCceEE
Confidence 699999999999999 99999999999999999999999999999997533 9999999 999999999999
Q ss_pred eecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcCCCC----------cEEEeEEEee
Q 038535 85 VKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQG----------SYKDRLRLYG 154 (225)
Q Consensus 85 iks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~~~G----------g~v~nI~~~~ 154 (225)
+|++...++.....|++||+|+||++..+ +.++.+|||++++|+||++|||+|.++.+| |.++||+|++
T Consensus 314 iksg~~~~~~~~~~~~~~i~i~~c~~~~g-hG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~gG~v~nI~~~~ 392 (542)
T COG5434 314 IKSGAGLDGKKGYGPSRNIVIRNCYFSSG-HGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNIVFED 392 (542)
T ss_pred eecccCCcccccccccccEEEecceeccc-ccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccceeEEEEEEec
Confidence 99998777655567999999999999988 899999999999999999999999998764 5566666653
No 9
>PLN02218 polygalacturonase ADPG
Probab=99.72 E-value=1.6e-15 Score=137.58 Aligned_cols=177 Identities=15% Similarity=0.169 Sum_probs=130.8
Q ss_pred ceeEEEEeecCeeEEece--EEeCCCC---c-----------------eEEeeeeecEEEEeEEEECCCCCCCCceecc-
Q 038535 16 GHLVELMNSSNILIISNL--TFCNSPS---R-----------------TIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP- 72 (225)
Q Consensus 16 p~~i~~~~~~nv~~i~gv--~l~n~~~---w-----------------~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~- 72 (225)
..+|.+.+.+||+ |.|- ..++... | .+.|.+|+|++|+++++.+++. ..+.+
T Consensus 147 ~~wi~~~~~~ni~-I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~----w~i~~~ 221 (431)
T PLN02218 147 SKWIMFDGVNNLS-VDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQ----IQISIE 221 (431)
T ss_pred ccCEEEecCcEEE-EECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCC----EEEEEE
Confidence 3678999999999 9883 2222211 2 4788999999999999999863 23333
Q ss_pred ---cceeeeCCceEEeec---CCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcCCCC--
Q 038535 73 ---DCYIESGNGLVAVKS---GWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQG-- 144 (225)
Q Consensus 73 ---~c~i~~gDD~i~iks---~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~~~G-- 144 (225)
|..++ .+.|.+ .++.||+++ ..++||+|+||++.++ |++|+|+|. .+||+|+||.+.. .+|
T Consensus 222 ~~~nV~i~----~v~I~a~~~spNTDGIdi-~ss~nV~I~n~~I~tG-DDcIaIksg----s~nI~I~n~~c~~-GHGis 290 (431)
T PLN02218 222 KCSNVQVS----NVVVTAPADSPNTDGIHI-TNTQNIRVSNSIIGTG-DDCISIESG----SQNVQINDITCGP-GHGIS 290 (431)
T ss_pred ceeeEEEE----EEEEeCCCCCCCCCcEee-cccceEEEEccEEecC-CceEEecCC----CceEEEEeEEEEC-CCCEE
Confidence 33333 444444 257899987 5589999999999999 999999985 4899999999953 342
Q ss_pred ----------cEEEeEEEeecC----CC-----CcCCCCCCcEEeEEEEEEEEeCCCceeEEEecC-----------CCC
Q 038535 145 ----------SYKDRLRLYGHP----KE-----GWDPKAIPKISGISFVNVVSVNTTKAPVLAGII-----------GTQ 194 (225)
Q Consensus 145 ----------g~v~nI~~~~~~----~~-----~~~~~~~~~i~~It~~ni~~~~~~~~~~i~g~~-----------~~~ 194 (225)
+.|+||++++.. .. .|. .+.+.++||+|+||++.+.+.|+.|.... ...
T Consensus 291 IGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~-Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~ 369 (431)
T PLN02218 291 IGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ-GGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQ 369 (431)
T ss_pred ECcCCCCCCCceEEEEEEEccEEecCCcceEEeecC-CCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeE
Confidence 368999998532 11 132 34569999999999999998888775321 124
Q ss_pred eecEEEEeEEEEecC
Q 038535 195 FEEICMKNVSLLVQA 209 (225)
Q Consensus 195 v~~i~~~Nv~i~~~~ 209 (225)
++||+|+||+.+.+.
T Consensus 370 I~nI~~~NI~gtsa~ 384 (431)
T PLN02218 370 VKNVVYRNISGTSAS 384 (431)
T ss_pred EEEEEEEeEEEEecC
Confidence 899999999998764
No 10
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.70 E-value=3.6e-15 Score=135.36 Aligned_cols=185 Identities=14% Similarity=0.192 Sum_probs=136.2
Q ss_pred ceeEEEEeecCeeEEeceEEeCCC---Cc--------eEEeeeeecEEEEeEEEECCCCCCCCceecc----cceeeeCC
Q 038535 16 GHLVELMNSSNILIISNLTFCNSP---SR--------TIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP----DCYIESGN 80 (225)
Q Consensus 16 p~~i~~~~~~nv~~i~gv~l~n~~---~w--------~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~----~c~i~~gD 80 (225)
..+|.|.+++++. |.|-..++.. .| .+.|..|+|+.|+++++.+++. .-+.+ |..++
T Consensus 104 ~~wI~f~~~~~i~-I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~----w~i~i~~c~nV~i~--- 175 (456)
T PLN03003 104 DQWILFTDIEGLV-IEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPM----AHIHISECNYVTIS--- 175 (456)
T ss_pred cceEEEEcccceE-EeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCc----EEEEEeccccEEEE---
Confidence 4589999999999 9986665542 23 5889999999999999999763 22333 33332
Q ss_pred ceEEeec---CCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcCCCC------------c
Q 038535 81 GLVAVKS---GWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQG------------S 145 (225)
Q Consensus 81 D~i~iks---~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~~~G------------g 145 (225)
.+.|.+ .++.||+++ ..++||+|+||.+.++ |++|+|++. .+||+|+||++.. .+| +
T Consensus 176 -~l~I~ap~~spNTDGIDi-~~S~nV~I~n~~I~tG-DDCIaiksg----s~NI~I~n~~c~~-GHGISIGSlg~~g~~~ 247 (456)
T PLN03003 176 -SLRINAPESSPNTDGIDV-GASSNVVIQDCIIATG-DDCIAINSG----TSNIHISGIDCGP-GHGISIGSLGKDGETA 247 (456)
T ss_pred -EEEEeCCCCCCCCCcEee-cCcceEEEEecEEecC-CCeEEeCCC----CccEEEEeeEEEC-CCCeEEeeccCCCCcc
Confidence 455554 468899987 5589999999999999 999999985 4899999999954 332 3
Q ss_pred EEEeEEEeecC----CC-----CcCCCCCCcEEeEEEEEEEEeCCCceeEEEecC--------------CCCeecEEEEe
Q 038535 146 YKDRLRLYGHP----KE-----GWDPKAIPKISGISFVNVVSVNTTKAPVLAGII--------------GTQFEEICMKN 202 (225)
Q Consensus 146 ~v~nI~~~~~~----~~-----~~~~~~~~~i~~It~~ni~~~~~~~~~~i~g~~--------------~~~v~~i~~~N 202 (225)
.|+||++++.. .. .|. .+.+.++||+|+||++.+...|+.|.... +..++||+|+|
T Consensus 248 ~V~NV~v~n~~~~~T~nGvRIKT~~-Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~N 326 (456)
T PLN03003 248 TVENVCVQNCNFRGTMNGARIKTWQ-GGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSN 326 (456)
T ss_pred eEEEEEEEeeEEECCCcEEEEEEeC-CCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEe
Confidence 58999998532 11 233 23468999999999999988898774321 12589999999
Q ss_pred EEEEecCC-CcceEEE
Q 038535 203 VSLLVQAP-SVKWQCR 217 (225)
Q Consensus 203 v~i~~~~~-~~~~~c~ 217 (225)
|+.+..+. +..+.|+
T Consensus 327 I~GTs~~~~ai~l~Cs 342 (456)
T PLN03003 327 FIGTSKSEYGVDFRCS 342 (456)
T ss_pred EEEEeCccceEEEEeC
Confidence 99876543 2334454
No 11
>PLN03010 polygalacturonase
Probab=99.68 E-value=1e-14 Score=131.36 Aligned_cols=185 Identities=15% Similarity=0.218 Sum_probs=131.8
Q ss_pred ceeEEEEeecCeeEEeceEEeCC---CCc-eEEeeeeecEEEEeEEEECCCCCCCCceecc----cceeeeCCceEEeec
Q 038535 16 GHLVELMNSSNILIISNLTFCNS---PSR-TIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP----DCYIESGNGLVAVKS 87 (225)
Q Consensus 16 p~~i~~~~~~nv~~i~gv~l~n~---~~w-~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~----~c~i~~gDD~i~iks 87 (225)
..++.|.+.+|+. |.|--.++. ..| .+.+.+|+|++|+++++.+++. .-+.+ +..++ .+.|.+
T Consensus 130 ~~wi~f~~v~nv~-I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~----~~i~i~~~~nv~i~----~i~I~a 200 (409)
T PLN03010 130 QMWISFSTVSGLM-IDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPK----NHISIKTCNYVAIS----KINILA 200 (409)
T ss_pred cceEEEecccccE-EeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCc----eEEEEeccccEEEE----EEEEeC
Confidence 4578899999999 999777765 345 5899999999999999999863 12222 22232 334433
Q ss_pred ---CCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcCCCC------------cEEEeEEE
Q 038535 88 ---GWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQG------------SYKDRLRL 152 (225)
Q Consensus 88 ---~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~~~G------------g~v~nI~~ 152 (225)
.++.||+++ ..++||+|+||++.++ |++|+|++.. .|+.|+++.+.. .+| +.|+||+|
T Consensus 201 ~~~s~NTDGiDi-~~s~nV~I~n~~I~~g-DDcIaiksgs----~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v 273 (409)
T PLN03010 201 PETSPNTDGIDI-SYSTNINIFDSTIQTG-DDCIAINSGS----SNINITQINCGP-GHGISVGSLGADGANAKVSDVHV 273 (409)
T ss_pred CCCCCCCCceee-eccceEEEEeeEEecC-CCeEEecCCC----CcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEE
Confidence 367899887 4589999999999999 9999999863 356666666543 221 24899988
Q ss_pred eecC-----CC----CcCCCCCCcEEeEEEEEEEEeCCCceeEEEecC---C---------CCeecEEEEeEEEEecCC-
Q 038535 153 YGHP-----KE----GWDPKAIPKISGISFVNVVSVNTTKAPVLAGII---G---------TQFEEICMKNVSLLVQAP- 210 (225)
Q Consensus 153 ~~~~-----~~----~~~~~~~~~i~~It~~ni~~~~~~~~~~i~g~~---~---------~~v~~i~~~Nv~i~~~~~- 210 (225)
++.. .. .|. .+.+.++||+|+||++++.+.|+.|.... + ..++||+|+|++-+....
T Consensus 274 ~n~~i~~t~~GirIKt~~-G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~ 352 (409)
T PLN03010 274 THCTFNQTTNGARIKTWQ-GGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNEN 352 (409)
T ss_pred EeeEEeCCCcceEEEEec-CCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCc
Confidence 8532 11 122 33468999999999999998898775321 1 258999999999886543
Q ss_pred CcceEEE
Q 038535 211 SVKWQCR 217 (225)
Q Consensus 211 ~~~~~c~ 217 (225)
+..+.|+
T Consensus 353 ~i~l~Cs 359 (409)
T PLN03010 353 AITLKCS 359 (409)
T ss_pred cEEEEeC
Confidence 3345554
No 12
>PLN02793 Probable polygalacturonase
Probab=99.68 E-value=9.1e-15 Score=133.13 Aligned_cols=175 Identities=14% Similarity=0.158 Sum_probs=130.8
Q ss_pred eeEEEEeecCeeEEeceEEeCCCC---c-----------------eEEeeeeecEEEEeEEEECCCCCCCCceecc----
Q 038535 17 HLVELMNSSNILIISNLTFCNSPS---R-----------------TIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP---- 72 (225)
Q Consensus 17 ~~i~~~~~~nv~~i~gv~l~n~~~---w-----------------~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~---- 72 (225)
.+|.+.+.+|++ |.|=..++... | .+.+..|+|++|+++++.+++. .-+.+
T Consensus 135 ~~i~~~~~~ni~-ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~----~~i~~~~~~ 209 (443)
T PLN02793 135 KWLYFHGVNHLT-VEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQ----MHIAFTNCR 209 (443)
T ss_pred eEEEEecCceEE-EEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCC----eEEEEEccC
Confidence 589999999999 98865554321 2 4788899999999999999763 12333
Q ss_pred cceeeeCCceEEeec---CCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcCCCC-----
Q 038535 73 DCYIESGNGLVAVKS---GWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQG----- 144 (225)
Q Consensus 73 ~c~i~~gDD~i~iks---~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~~~G----- 144 (225)
|..++ .+.|.+ .++.||+++ ..++||+|+||++.++ |++|+|++. -+||+|+||.+.. .+|
T Consensus 210 nv~i~----~l~I~~p~~spNTDGIdi-~~s~nV~I~n~~I~~g-DDcIaik~~----s~nI~I~n~~c~~-GhGisIGS 278 (443)
T PLN02793 210 RVTIS----GLKVIAPATSPNTDGIHI-SASRGVVIKDSIVRTG-DDCISIVGN----SSRIKIRNIACGP-GHGISIGS 278 (443)
T ss_pred cEEEE----EEEEECCCCCCCCCcEee-eccceEEEEeCEEeCC-CCeEEecCC----cCCEEEEEeEEeC-CccEEEec
Confidence 33443 555654 367899987 5589999999999999 999999874 4899999999843 332
Q ss_pred -------cEEEeEEEeecC----CC-----CcCCCCCCcEEeEEEEEEEEeCCCceeEEEecC---C---------CCee
Q 038535 145 -------SYKDRLRLYGHP----KE-----GWDPKAIPKISGISFVNVVSVNTTKAPVLAGII---G---------TQFE 196 (225)
Q Consensus 145 -------g~v~nI~~~~~~----~~-----~~~~~~~~~i~~It~~ni~~~~~~~~~~i~g~~---~---------~~v~ 196 (225)
+.|+||++++.. +. .|. .+.+.++||+|+||++++...|+.|.... . ..++
T Consensus 279 lg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~-g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~ 357 (443)
T PLN02793 279 LGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQ-GGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVE 357 (443)
T ss_pred ccCcCCCCcEEEEEEEccEEeCCCceEEEEEeC-CCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEE
Confidence 469999998532 11 132 23468999999999999998898875421 1 2489
Q ss_pred cEEEEeEEEEec
Q 038535 197 EICMKNVSLLVQ 208 (225)
Q Consensus 197 ~i~~~Nv~i~~~ 208 (225)
||+|+||+-+..
T Consensus 358 nI~~~nI~Gt~~ 369 (443)
T PLN02793 358 NISFVHIKGTSA 369 (443)
T ss_pred eEEEEEEEEEEc
Confidence 999999998764
No 13
>PLN02155 polygalacturonase
Probab=99.67 E-value=2e-14 Score=129.03 Aligned_cols=176 Identities=11% Similarity=0.147 Sum_probs=130.7
Q ss_pred eeEEEEeecCeeEEeceEEeCCC---Cc--------------eEEeeeeecEEEEeEEEECCCCCCCCceecc----cce
Q 038535 17 HLVELMNSSNILIISNLTFCNSP---SR--------------TIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP----DCY 75 (225)
Q Consensus 17 ~~i~~~~~~nv~~i~gv~l~n~~---~w--------------~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~----~c~ 75 (225)
.++.|.+.+++. |.| ...+.. .| .+.+..|++|+|+++++.+++. .-+.+ |..
T Consensus 107 ~wi~~~~~~~i~-i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~----w~i~~~~~~nv~ 180 (394)
T PLN02155 107 YWILFNKVNRFS-LVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQV----SHMTLNGCTNVV 180 (394)
T ss_pred eeEEEECcCCCE-EEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCC----eEEEEECeeeEE
Confidence 478999999999 888 443322 12 3789999999999999999763 22332 333
Q ss_pred eeeCCceEEeec---CCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcCCC---------
Q 038535 76 IESGNGLVAVKS---GWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQ--------- 143 (225)
Q Consensus 76 i~~gDD~i~iks---~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~~~--------- 143 (225)
++ .+.|.+ .++.||+++ ..++||+|+||++.++ |++|+|++. .+||+|+||.+.. .+
T Consensus 181 i~----~v~I~~p~~~~NtDGidi-~~s~nV~I~~~~I~~g-DDcIaik~g----s~nI~I~n~~c~~-GhGisIGS~g~ 249 (394)
T PLN02155 181 VR----NVKLVAPGNSPNTDGFHV-QFSTGVTFTGSTVQTG-DDCVAIGPG----TRNFLITKLACGP-GHGVSIGSLAK 249 (394)
T ss_pred EE----EEEEECCCCCCCCCcccc-ccceeEEEEeeEEecC-CceEEcCCC----CceEEEEEEEEEC-CceEEeccccc
Confidence 33 444544 467899987 5599999999999999 999999985 4899999999964 22
Q ss_pred ---CcEEEeEEEeec----CCC-----CcCCCCCCcEEeEEEEEEEEeCCCceeEEEecC------------CCCeecEE
Q 038535 144 ---GSYKDRLRLYGH----PKE-----GWDPKAIPKISGISFVNVVSVNTTKAPVLAGII------------GTQFEEIC 199 (225)
Q Consensus 144 ---Gg~v~nI~~~~~----~~~-----~~~~~~~~~i~~It~~ni~~~~~~~~~~i~g~~------------~~~v~~i~ 199 (225)
.|.|+||++++. ++. .|...+.+.++||+|+||++++.+.|+.|.... +..++||+
T Consensus 250 ~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It 329 (394)
T PLN02155 250 ELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVT 329 (394)
T ss_pred cCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEE
Confidence 246899998843 111 244334579999999999999998888774311 12589999
Q ss_pred EEeEEEEecC
Q 038535 200 MKNVSLLVQA 209 (225)
Q Consensus 200 ~~Nv~i~~~~ 209 (225)
|+||+.+..+
T Consensus 330 ~~ni~gt~~~ 339 (394)
T PLN02155 330 YKNIQGTSAT 339 (394)
T ss_pred EEeeEEEecC
Confidence 9999998764
No 14
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.65 E-value=4e-14 Score=127.57 Aligned_cols=177 Identities=15% Similarity=0.172 Sum_probs=130.3
Q ss_pred eeEEEEeecCeeEEeceEEeCCC---Cc----------------eEEeeeeecEEEEeEEEECCCCCCCCceecc----c
Q 038535 17 HLVELMNSSNILIISNLTFCNSP---SR----------------TIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP----D 73 (225)
Q Consensus 17 ~~i~~~~~~nv~~i~gv~l~n~~---~w----------------~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~----~ 73 (225)
.++.|..++|++ |.|--.++.. .| .+.|..|++++|+++++.+++. ..+.+ |
T Consensus 114 ~~i~~~~~~ni~-I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~----w~i~~~~~~~ 188 (404)
T PLN02188 114 DWIEFGWVNGLT-LTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKF----FHIALVECRN 188 (404)
T ss_pred ceEEEeceeeEE-EEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCC----eEEEEEcccc
Confidence 577888899999 9886555432 22 3678899999999999999863 23443 3
Q ss_pred ceeeeCCceEEeec---CCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcCCC-------
Q 038535 74 CYIESGNGLVAVKS---GWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQ------- 143 (225)
Q Consensus 74 c~i~~gDD~i~iks---~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~~~------- 143 (225)
..++ .+.|.+ .++.||+++ ..++||+|+||++.++ +++|+|++.. +||+|+||.+.. .+
T Consensus 189 v~i~----~v~I~~~~~spNtDGidi-~~s~nV~I~n~~I~~G-DDcIaiksg~----~nI~I~n~~c~~-ghGisiGSl 257 (404)
T PLN02188 189 FKGS----GLKISAPSDSPNTDGIHI-ERSSGVYISDSRIGTG-DDCISIGQGN----SQVTITRIRCGP-GHGISVGSL 257 (404)
T ss_pred EEEE----EEEEeCCCCCCCCCcEee-eCcccEEEEeeEEeCC-CcEEEEccCC----ccEEEEEEEEcC-CCcEEeCCC
Confidence 3343 444544 357889887 5589999999999999 9999998754 699999999853 22
Q ss_pred -----CcEEEeEEEeecC----C-----CCcCC-CCCCcEEeEEEEEEEEeCCCceeEEEec------------CCCCee
Q 038535 144 -----GSYKDRLRLYGHP----K-----EGWDP-KAIPKISGISFVNVVSVNTTKAPVLAGI------------IGTQFE 196 (225)
Q Consensus 144 -----Gg~v~nI~~~~~~----~-----~~~~~-~~~~~i~~It~~ni~~~~~~~~~~i~g~------------~~~~v~ 196 (225)
.+.|+||++++.. + ..|.. .+.+.++||+|+||++.+...|+.|... ....++
T Consensus 258 G~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~ 337 (404)
T PLN02188 258 GRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLS 337 (404)
T ss_pred CCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEE
Confidence 1458888888532 1 12432 2346899999999999998888887531 113589
Q ss_pred cEEEEeEEEEecC
Q 038535 197 EICMKNVSLLVQA 209 (225)
Q Consensus 197 ~i~~~Nv~i~~~~ 209 (225)
||+|+||+.+...
T Consensus 338 nIt~~nI~gt~~~ 350 (404)
T PLN02188 338 DIYFKNIRGTSSS 350 (404)
T ss_pred eEEEEEEEEEecC
Confidence 9999999988754
No 15
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.59 E-value=5e-14 Score=124.11 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=117.5
Q ss_pred eeEEEEeecCeeEEeceEEeCCCC----ceEEeeeeecEEEEeEEEECCCCC----CCCceecc-cceeeeCCceEEeec
Q 038535 17 HLVELMNSSNILIISNLTFCNSPS----RTIHPVYCRNGFVKGMTVLSPLSA----PNTDGLDP-DCYIESGNGLVAVKS 87 (225)
Q Consensus 17 ~~i~~~~~~nv~~i~gv~l~n~~~----w~i~~~~c~nV~v~~~~i~~~~~~----~ntDGid~-~c~i~~gDD~i~iks 87 (225)
..+++.+|+||+ |+++++.+++. ..+++..|+||+|+|+.|.+.++. .....+.+ ||++..+. +++|.+
T Consensus 116 w~~~~~~~~nv~-i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~gh-GisiGS 193 (326)
T PF00295_consen 116 WHIHINDCDNVT-ISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSGSGNILVENCTCSGGH-GISIGS 193 (326)
T ss_dssp ESEEEESEEEEE-EESEEEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEEESSEECEEEEESEEEESSS-EEEEEE
T ss_pred eEEEEEccCCeE-EcceEEEecCCCCCcceEEEEeeeEEEEEEeecccccCcccccccccceEEEeEEEeccc-cceeee
Confidence 567899999999 99999998764 379999999999999999998641 11112333 89998765 599988
Q ss_pred CCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEecc--ccCcEEeEEEEeeEEEcCCC-------------------CcE
Q 038535 88 GWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGRE--MSGRIFNVTVNHLDVWMQQQ-------------------GSY 146 (225)
Q Consensus 88 ~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~--~~~~v~ni~~~n~~~~~~~~-------------------Gg~ 146 (225)
.... +. ....+||+|+||++... ..|+.|++. ..|.|+||+|+|++|.+... +..
T Consensus 194 ~~~~-~~--~~~i~nV~~~n~~i~~t-~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~ 269 (326)
T PF00295_consen 194 EGSG-GS--QNDIRNVTFENCTIINT-DNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVS 269 (326)
T ss_dssp ESSS-SE----EEEEEEEEEEEEESE-SEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSE
T ss_pred ccCC-cc--ccEEEeEEEEEEEeecc-ceEEEEEEecccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCce
Confidence 5321 11 12479999999999887 799999986 45789999999999987542 247
Q ss_pred EEeEEEeecC---CCCc----CCCCCCcEEeEEEEEEEEeC
Q 038535 147 KDRLRLYGHP---KEGW----DPKAIPKISGISFVNVVSVN 180 (225)
Q Consensus 147 v~nI~~~~~~---~~~~----~~~~~~~i~~It~~ni~~~~ 180 (225)
|+||+|++.. ...+ ......+++||+|+||.++.
T Consensus 270 i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 270 ISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG 310 (326)
T ss_dssp EEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES
T ss_pred EEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc
Confidence 9999999532 1111 11222369999999999997
No 16
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.47 E-value=7.2e-13 Score=120.29 Aligned_cols=110 Identities=15% Similarity=0.224 Sum_probs=70.8
Q ss_pred eeEEE---EeecCeeEEeceEEeCCCCceEEeeeee----cEEEEeEEEECCCCCCCCceecc-------cceeeeCCce
Q 038535 17 HLVEL---MNSSNILIISNLTFCNSPSRTIHPVYCR----NGFVKGMTVLSPLSAPNTDGLDP-------DCYIESGNGL 82 (225)
Q Consensus 17 ~~i~~---~~~~nv~~i~gv~l~n~~~w~i~~~~c~----nV~v~~~~i~~~~~~~ntDGid~-------~c~i~~gDD~ 82 (225)
+|+.+ ..+.+.. ++|++|.+||+|++.+..-+ +..|+|.++.... ..|+|||.+ |||+++.||+
T Consensus 318 km~~~~~~~g~q~~~-~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW-~~qtDGi~ly~nS~i~dcF~h~nDD~ 395 (582)
T PF03718_consen 318 KMLWHISANGGQTLT-CEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAW-YFQTDGIELYPNSTIRDCFIHVNDDA 395 (582)
T ss_dssp -SEEECS-SSSEEEE-EES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CTT----B--TT-EEEEEEEEESS-S
T ss_pred hhhhhhccCCcceEE-EEeeEecCCCcceEEecCCccccccceeeceeeeeeE-EeccCCccccCCCeeeeeEEEecCch
Confidence 66664 4556999 99999999999999999544 5899999999864 689999999 9999999999
Q ss_pred EEeecCCCCCCccCCCCeecEEEEeEEEeCCC-CCEEEEeccccCcEEeEEEEeeEEEcCC
Q 038535 83 VAVKSGWDHDGIAMARPSSNIAVRRVSGTTPT-CSGVGIGREMSGRIFNVTVNHLDVWMQQ 142 (225)
Q Consensus 83 i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~-~~gi~iGs~~~~~v~ni~~~n~~~~~~~ 142 (225)
|.+.- .++.|+||++|... +.-+.+|.. +..++||+|+|+.+..+.
T Consensus 396 iKlYh-------------S~v~v~~~ViWk~~Ngpiiq~GW~-pr~isnv~veni~IIh~r 442 (582)
T PF03718_consen 396 IKLYH-------------SNVSVSNTVIWKNENGPIIQWGWT-PRNISNVSVENIDIIHNR 442 (582)
T ss_dssp EE--S-------------TTEEEEEEEEEE-SSS-SEE--CS----EEEEEEEEEEEEE--
T ss_pred hheee-------------cCcceeeeEEEecCCCCeEEeecc-ccccCceEEeeeEEEeee
Confidence 85542 68999999999641 233556654 567999999999998763
No 17
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.10 E-value=5.8e-10 Score=103.18 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=96.9
Q ss_pred eeEEEEeecCeeEEeceEEeCCCC---ceEEeeeeecEEEEeEEEECCCC------CCCCc---eecc-------cceee
Q 038535 17 HLVELMNSSNILIISNLTFCNSPS---RTIHPVYCRNGFVKGMTVLSPLS------APNTD---GLDP-------DCYIE 77 (225)
Q Consensus 17 ~~i~~~~~~nv~~i~gv~l~n~~~---w~i~~~~c~nV~v~~~~i~~~~~------~~ntD---Gid~-------~c~i~ 77 (225)
+.+++..|+|++ ++++++.+.-. ..+.+..|+||+|++++|.+.++ +...| +..+ ||.+.
T Consensus 262 ~~~h~~~~~nl~-~~nl~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~ 340 (542)
T COG5434 262 WTVHPVDCDNLT-FRNLTIDANRFDNTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFS 340 (542)
T ss_pred EEEeeecccCce-ecceEEECCCCCCCCccccccceeEEEeccEEecCCceEEeecccCCcccccccccccEEEecceec
Confidence 788899999999 99999986544 47999999999999999999875 22223 2222 99999
Q ss_pred eCCceEEeecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEecc--ccCcEEeEEEEeeEEEcC
Q 038535 78 SGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGRE--MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 78 ~gDD~i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~--~~~~v~ni~~~n~~~~~~ 141 (225)
.+...+.+.++.. ...+||.+|||.+... +.||+|++. .+|.++||+|++..+.+.
T Consensus 341 ~ghG~~v~Gse~~-------ggv~ni~ved~~~~~~-d~GLRikt~~~~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 341 SGHGGLVLGSEMG-------GGVQNITVEDCVMDNT-DRGLRIKTNDGRGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred ccccceEeeeecC-------CceeEEEEEeeeeccC-cceeeeeeecccceeEEEEEEecccccCc
Confidence 9999999888632 3599999999999987 899999998 467899999999999876
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.08 E-value=4.2e-05 Score=70.38 Aligned_cols=177 Identities=17% Similarity=0.194 Sum_probs=102.0
Q ss_pred CceeEEEEeecCeeEEeceEEeCCC----------------------------CceEEeeeeecEEEEeEEEECCCC---
Q 038535 15 RGHLVELMNSSNILIISNLTFCNSP----------------------------SRTIHPVYCRNGFVKGMTVLSPLS--- 63 (225)
Q Consensus 15 rp~~i~~~~~~nv~~i~gv~l~n~~----------------------------~w~i~~~~c~nV~v~~~~i~~~~~--- 63 (225)
...+..+..+.|+. +.|-.++... .|++....++++.+++++|..++.
T Consensus 268 kGAf~~~~~~~nv~-i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm 346 (582)
T PF03718_consen 268 KGAFEYTDTQQNVK-ITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSM 346 (582)
T ss_dssp ES-EEE---SSEEE-EESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SE
T ss_pred EEEEEEccCCceEE-EEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceE
Confidence 33444445788888 8776664321 234556778999999999999874
Q ss_pred -CCCCceecccceeeeCCceEEeecC-CCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcC
Q 038535 64 -APNTDGLDPDCYIESGNGLVAVKSG-WDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 64 -~~ntDGid~~c~i~~gDD~i~iks~-~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~ 141 (225)
..+++..+++|.|+. ---|.+. ...||+.+ .+|=+|+||.++.. +++|++=. +++.++||++++.
T Consensus 347 ~l~g~~~~~~~~~i~n---yKqVGaW~~qtDGi~l---y~nS~i~dcF~h~n-DD~iKlYh------S~v~v~~~ViWk~ 413 (582)
T PF03718_consen 347 DLYGNENDKFSMNISN---YKQVGAWYFQTDGIEL---YPNSTIRDCFIHVN-DDAIKLYH------SNVSVSNTVIWKN 413 (582)
T ss_dssp EEESSSGGGEEEEEEE---EEEE---CTT----B-----TT-EEEEEEEEES-S-SEE--S------TTEEEEEEEEEE-
T ss_pred EecCCccccccceeec---eeeeeeEEeccCCccc---cCCCeeeeeEEEec-Cchhheee------cCcceeeeEEEec
Confidence 112232222455542 2223332 46788875 78999999999988 99998742 7899999999987
Q ss_pred CCC---------cEEEeEEEee----cCC----------------CCcCC-----CCCC--cEEeEEEEEEEEeCCCcee
Q 038535 142 QQG---------SYKDRLRLYG----HPK----------------EGWDP-----KAIP--KISGISFVNVVSVNTTKAP 185 (225)
Q Consensus 142 ~~G---------g~v~nI~~~~----~~~----------------~~~~~-----~~~~--~i~~It~~ni~~~~~~~~~ 185 (225)
.+| ..++||.+++ +.. ..|.. .+.| .|++++|+|+++++ ..+.
T Consensus 414 ~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG-~~~~ 492 (582)
T PF03718_consen 414 ENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEG-MCPC 492 (582)
T ss_dssp SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEEC-CE-E
T ss_pred CCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEec-ccce
Confidence 664 3567777773 111 12421 1122 78999999999997 6666
Q ss_pred EEEecCCCCeecEEEEeEEEE
Q 038535 186 VLAGIIGTQFEEICMKNVSLL 206 (225)
Q Consensus 186 ~i~g~~~~~v~~i~~~Nv~i~ 206 (225)
.+.=.|-..-+|+.++|+.+.
T Consensus 493 l~ri~plqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 493 LFRIYPLQNYDNLVIKNVHFE 513 (582)
T ss_dssp CEEE--SEEEEEEEEEEEEEC
T ss_pred eEEEeecCCCcceEEEEeecc
Confidence 777677777888999999998
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=97.94 E-value=0.00016 Score=63.54 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=74.2
Q ss_pred EEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCC---CCCCceecc---------cceeeeCCc-eEEeec
Q 038535 21 LMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLS---APNTDGLDP---------DCYIESGNG-LVAVKS 87 (225)
Q Consensus 21 ~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~---~~ntDGid~---------~c~i~~gDD-~i~iks 87 (225)
+..+++|+ |+++++.+++.+.+.+..|++++|+++++..... ....+||.+ +|+++...| +|.++.
T Consensus 59 ~v~a~~Vt-I~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~ 137 (314)
T TIGR03805 59 LVTSDDVT-LSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ 137 (314)
T ss_pred EEEeCCeE-EEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC
Confidence 44689999 9999999999999999999999999999974311 123467777 666665433 565553
Q ss_pred CCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcCC
Q 038535 88 GWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQ 142 (225)
Q Consensus 88 ~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~~ 142 (225)
+++++|+|++++.. ..||.+-. ..++.+++..+.+..
T Consensus 138 ------------s~~~~v~nN~~~~n-~~GI~i~~-----S~~~~v~~N~~~~N~ 174 (314)
T TIGR03805 138 ------------SQNIVVRNNVAEEN-VAGIEIEN-----SQNADVYNNIATNNT 174 (314)
T ss_pred ------------CCCeEEECCEEccC-cceEEEEe-----cCCcEEECCEEeccc
Confidence 68899999988765 67777743 245566666665533
No 20
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=97.91 E-value=0.00042 Score=58.67 Aligned_cols=32 Identities=9% Similarity=0.295 Sum_probs=17.4
Q ss_pred cEEeEEEEEEEEeCCCceeEEEecCCCCeecEEEEeEEEE
Q 038535 167 KISGISFVNVVSVNTTKAPVLAGIIGTQFEEICMKNVSLL 206 (225)
Q Consensus 167 ~i~~It~~ni~~~~~~~~~~i~g~~~~~v~~i~~~Nv~i~ 206 (225)
.=+||||-|.++.+ .+|. | -+++++++|.++.
T Consensus 192 ~SkNltliNC~I~g-~QpL---C----Y~~~L~l~nC~~~ 223 (277)
T PF12541_consen 192 NSKNLTLINCTIEG-TQPL---C----YCDNLVLENCTMI 223 (277)
T ss_pred EcCCeEEEEeEEec-cCcc---E----eecceEEeCcEee
Confidence 44567777777665 2221 0 1456666666655
No 21
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=97.91 E-value=9.2e-05 Score=62.59 Aligned_cols=111 Identities=20% Similarity=0.196 Sum_probs=67.4
Q ss_pred CCceeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCC-----ceecc---------------c
Q 038535 14 TRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNT-----DGLDP---------------D 73 (225)
Q Consensus 14 ~rp~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~nt-----DGid~---------------~ 73 (225)
..|.+ |..|++++ +++++|-+++-- +..|++|.++|+++.+..-+.+. ||+.+ |
T Consensus 89 ~apK~--fR~~~~i~-L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~n 162 (277)
T PF12541_consen 89 QAPKM--FRECSNIT-LENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHN 162 (277)
T ss_pred cCchH--hhcccCcE-EEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEc
Confidence 45655 56789999 999999888741 23477777777777443222233 23322 4
Q ss_pred ceeeeCCceEEeecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcCCCCcEEEeEEEe
Q 038535 74 CYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQGSYKDRLRLY 153 (225)
Q Consensus 74 c~i~~gDD~i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~~~Gg~v~nI~~~ 153 (225)
|.+.+.| ++ | .++||+|.|+++.+. -+|.. -+|+++-||++.+.+---+++|+.++
T Consensus 163 s~l~sKD-AF-----W---------n~eNVtVyDS~i~GE-----YLgW~----SkNltliNC~I~g~QpLCY~~~L~l~ 218 (277)
T PF12541_consen 163 SKLDSKD-AF-----W---------NCENVTVYDSVINGE-----YLGWN----SKNLTLINCTIEGTQPLCYCDNLVLE 218 (277)
T ss_pred cEEeccc-cc-----c---------cCCceEEEcceEeee-----EEEEE----cCCeEEEEeEEeccCccEeecceEEe
Confidence 4444332 11 1 377888888777543 33332 37888888888765533467777776
Q ss_pred e
Q 038535 154 G 154 (225)
Q Consensus 154 ~ 154 (225)
+
T Consensus 219 n 219 (277)
T PF12541_consen 219 N 219 (277)
T ss_pred C
Confidence 5
No 22
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.76 E-value=0.00013 Score=56.14 Aligned_cols=102 Identities=23% Similarity=0.193 Sum_probs=67.5
Q ss_pred EEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCCceecc---------cceeeeCCceEEeecCC
Q 038535 19 VELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP---------DCYIESGNGLVAVKSGW 89 (225)
Q Consensus 19 i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~---------~c~i~~gDD~i~iks~~ 89 (225)
|.+....+++ |++.+|.+.....+++..+..++|++++|... ..|+.+ +|.+.....++.+.
T Consensus 3 i~i~~~~~~~-i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~~-----~~gi~~~~~~~~~i~~~~~~~~~~~i~~~--- 73 (158)
T PF13229_consen 3 ISINNGSNVT-IRNCTISNNGGDGIHVSGSSNITIENCTISNG-----GYGIYVSGGSNVTISNNTISDNGSGIYVS--- 73 (158)
T ss_dssp EEETTCEC-E-EESEEEESSSSECEEE-SSCESEEES-EEESS-----TTSEEEECCES-EEES-EEES-SEEEECC---
T ss_pred EEEECCcCeE-EeeeEEEeCCCeEEEEEcCCCeEEECeEEECC-----CcEEEEecCCCeEEECeEEEEccceEEEE---
Confidence 5677888999 99999999999999999999999999999983 245555 66666544222222
Q ss_pred CCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcCC
Q 038535 90 DHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQ 142 (225)
Q Consensus 90 ~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~~ 142 (225)
....++|++|.+......||.+.. ...+++|++++|.+..
T Consensus 74 ---------~~~~~~i~~~~i~~~~~~gi~~~~----~~~~~~i~~n~~~~~~ 113 (158)
T PF13229_consen 74 ---------GSSNITIENNRIENNGDYGIYISN----SSSNVTIENNTIHNNG 113 (158)
T ss_dssp ---------S-CS-EEES-EEECSSS-SCE-TC----EECS-EEES-EEECCT
T ss_pred ---------ecCCceecCcEEEcCCCccEEEec----cCCCEEEEeEEEEeCc
Confidence 368899999988866345888763 2467888999998765
No 23
>smart00656 Amb_all Amb_all domain.
Probab=97.62 E-value=0.0006 Score=55.71 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=56.0
Q ss_pred ceEEeeeeecEEEEeEEEECCCC--CCCCceecc---------cceeeeC----------CceEEeecCCCCCCccCCCC
Q 038535 41 RTIHPVYCRNGFVKGMTVLSPLS--APNTDGLDP---------DCYIESG----------NGLVAVKSGWDHDGIAMARP 99 (225)
Q Consensus 41 w~i~~~~c~nV~v~~~~i~~~~~--~~ntDGid~---------~c~i~~g----------DD~i~iks~~~~~g~~~~~~ 99 (225)
..+.+..++||.|+|++|+.... ..+.|+|.+ +|++..+ |..+.+|. .
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~-----------~ 100 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKN-----------G 100 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECc-----------c
Confidence 45666667788888888887532 134566665 6666654 44444544 3
Q ss_pred eecEEEEeEEEeCCCCCEEEEeccc---cCcEEeEEEEeeEEEc
Q 038535 100 SSNIAVRRVSGTTPTCSGVGIGREM---SGRIFNVTVNHLDVWM 140 (225)
Q Consensus 100 ~~nV~v~nc~~~~~~~~gi~iGs~~---~~~v~ni~~~n~~~~~ 140 (225)
+.+|+|++|.|... .-++-+|+.. .....+|++.++.+.+
T Consensus 101 s~~vTvs~~~f~~h-~~~~liG~~d~~~~~~~~~vT~h~N~~~~ 143 (190)
T smart00656 101 STYVTISNNYFHNH-WKVMLLGHSDSDTDDGKMRVTIAHNYFGN 143 (190)
T ss_pred cccEEEECceEecC-CEEEEEccCCCccccccceEEEECcEEcC
Confidence 67888888888765 6777777642 2224467777777754
No 24
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.43 E-value=0.0023 Score=58.33 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=65.6
Q ss_pred CCCceeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCCceecc----------cceeeeCCce
Q 038535 13 HTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP----------DCYIESGNGL 82 (225)
Q Consensus 13 ~~rp~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~----------~c~i~~gDD~ 82 (225)
..||.+|++..|++++ |++.+|.+++.|.+.+..|+ ..|.+-+|..... .+|++ |-...+.|+.
T Consensus 132 ~~rdAgI~v~~a~~v~-Iedn~L~gsg~FGI~L~~~~-~~I~~N~I~g~~~----~~I~lw~S~g~~V~~N~I~g~RD~g 205 (455)
T TIGR03808 132 PQRRGLIHCQGGRDVR-ITDCEITGSGGNGIWLETVS-GDISGNTITQIAV----TAIVSFDALGLIVARNTIIGANDNG 205 (455)
T ss_pred cCCCCEEEEccCCceE-EEeeEEEcCCcceEEEEcCc-ceEecceEecccc----ceEEEeccCCCEEECCEEEccCCCC
Confidence 3688899998899999 99999999888999999888 5554444444321 22333 2223344555
Q ss_pred EEeecC-----------------------CCCC--CccCCCCeecEEEEeEEEeCCCC-CEEEEecc
Q 038535 83 VAVKSG-----------------------WDHD--GIAMARPSSNIAVRRVSGTTPTC-SGVGIGRE 123 (225)
Q Consensus 83 i~iks~-----------------------~~~~--g~~~~~~~~nV~v~nc~~~~~~~-~gi~iGs~ 123 (225)
|.+... ..+. |+.+ --+.+++|++..+... . +||.+-|.
T Consensus 206 i~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~-~~a~~v~V~gN~I~~~-r~dgI~~nss 270 (455)
T TIGR03808 206 IEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINA-FRAGNVIVRGNRIRNC-DYSAVRGNSA 270 (455)
T ss_pred eEEEEeeecCCcceeeccccccccccCCCcCCccccEEE-EccCCeEEECCEEecc-ccceEEEEcc
Confidence 555521 1122 3333 2367888888888766 5 78887654
No 25
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.03 E-value=0.0025 Score=52.42 Aligned_cols=14 Identities=7% Similarity=0.131 Sum_probs=7.6
Q ss_pred eeecEEEEeEEEEC
Q 038535 47 YCRNGFVKGMTVLS 60 (225)
Q Consensus 47 ~c~nV~v~~~~i~~ 60 (225)
.++||.|+|++|..
T Consensus 44 ~~~NVIirNl~~~~ 57 (200)
T PF00544_consen 44 GASNVIIRNLRFRN 57 (200)
T ss_dssp SCEEEEEES-EEEC
T ss_pred CCCeEEEECCEEEe
Confidence 55566666655555
No 26
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=96.83 E-value=0.019 Score=49.84 Aligned_cols=119 Identities=16% Similarity=0.099 Sum_probs=74.0
Q ss_pred EEEEeecCeeEEeceEEeC-CCCceEEeeeeecEEEEeEEEECCCC-CCCCceecc----------cceeeeCCceEEee
Q 038535 19 VELMNSSNILIISNLTFCN-SPSRTIHPVYCRNGFVKGMTVLSPLS-APNTDGLDP----------DCYIESGNGLVAVK 86 (225)
Q Consensus 19 i~~~~~~nv~~i~gv~l~n-~~~w~i~~~~c~nV~v~~~~i~~~~~-~~ntDGid~----------~c~i~~gDD~i~ik 86 (225)
+.+.-|.|++ |.|+.-.- --.|.+.+.+.+||.|+|++|..... -++-|+|.+ +|++..+--. -
T Consensus 95 ~~iki~sNkT-ivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~---~ 170 (345)
T COG3866 95 ITIKIGSNKT-IVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYN---A 170 (345)
T ss_pred EEEeeccccE-EEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccc---c
Confidence 6677777888 76664211 12488999999999999999997431 123355554 6666652110 0
Q ss_pred cCCCCCCc-cCCCCeecEEEEeEEEeCCCCCEEEEecccc----CcEEeEEEEeeEEEcCC
Q 038535 87 SGWDHDGI-AMARPSSNIAVRRVSGTTPTCSGVGIGREMS----GRIFNVTVNHLDVWMQQ 142 (225)
Q Consensus 87 s~~~~~g~-~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~----~~v~ni~~~n~~~~~~~ 142 (225)
++...||+ ++.+.+..|+|++|.|... +-++-+|+... .+-.+|++.++.|.+..
T Consensus 171 ~~~h~DGl~Dik~~AnyITiS~n~fhdh-~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~ 230 (345)
T COG3866 171 SGSHGDGLVDIKKDANYITISYNKFHDH-DKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLY 230 (345)
T ss_pred cccCCCccEEeccCCcEEEEEeeeeecC-CeeeeeccCCcccccCCceeEEEecccccccc
Confidence 01111221 2334578889999988876 67777887632 34467888877777653
No 27
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.82 E-value=0.004 Score=50.93 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=23.9
Q ss_pred eeEEeceEEeCCC------CceEEeeeeecEEEEeEEEECC
Q 038535 27 ILIISNLTFCNSP------SRTIHPVYCRNGFVKGMTVLSP 61 (225)
Q Consensus 27 v~~i~gv~l~n~~------~w~i~~~~c~nV~v~~~~i~~~ 61 (225)
+. |++++|.... .-.+++..|+++.|+++++.+.
T Consensus 94 ~~-i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~ 133 (225)
T PF12708_consen 94 IQ-IRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS 133 (225)
T ss_dssp EE-EEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-
T ss_pred EE-EEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc
Confidence 45 6666665433 2357888899999999999875
No 28
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=96.74 E-value=0.025 Score=49.80 Aligned_cols=107 Identities=20% Similarity=0.090 Sum_probs=77.0
Q ss_pred eeEEEEeecCeeEEeceEEeC-------CCCceEEeeeeecEEEEeEEEECCCCCCCCceecc---------cceeeeCC
Q 038535 17 HLVELMNSSNILIISNLTFCN-------SPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP---------DCYIESGN 80 (225)
Q Consensus 17 ~~i~~~~~~nv~~i~gv~l~n-------~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~---------~c~i~~gD 80 (225)
..|.+..|++++ |+++++.. ...+.+.+..|++++|++..+....+ +||-+ ++++....
T Consensus 78 ~GI~v~~s~~i~-I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d----~GIyv~~s~~~~v~nN~~~~n~ 152 (314)
T TIGR03805 78 DGVKVKGSDGII-IRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASD----AGIYVGQSQNIVVRNNVAEENV 152 (314)
T ss_pred CeEEEeCCCCEE-EEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCc----ccEEECCCCCeEEECCEEccCc
Confidence 477889999999 99999962 34678999999999999999988532 36665 45554443
Q ss_pred ceEEeecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccC---cEEeEEEEeeEEEcC
Q 038535 81 GLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSG---RIFNVTVNHLDVWMQ 141 (225)
Q Consensus 81 D~i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~---~v~ni~~~n~~~~~~ 141 (225)
.+|-+- -+.++.|++..+... ..|+.+-+.-.. .-++++|++-.+.+.
T Consensus 153 ~GI~i~------------~S~~~~v~~N~~~~N-~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 153 AGIEIE------------NSQNADVYNNIATNN-TGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred ceEEEE------------ecCCcEEECCEEecc-ceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 333333 367899999988866 578888433111 247888888888754
No 29
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=96.74 E-value=0.038 Score=50.52 Aligned_cols=89 Identities=17% Similarity=0.056 Sum_probs=63.6
Q ss_pred ceeEEEEeecCeeEEeceEEeCCCC------ceEEeeeeecEEEEeEEEECCCCCCCCceecc--------cceee-eCC
Q 038535 16 GHLVELMNSSNILIISNLTFCNSPS------RTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP--------DCYIE-SGN 80 (225)
Q Consensus 16 p~~i~~~~~~nv~~i~gv~l~n~~~------w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~--------~c~i~-~gD 80 (225)
..++....+++|+ |+|++|.++.. ..|.+..|++++|++++|.++. .-||.+ +..|. +.+
T Consensus 106 ~~lIiai~A~nVT-IsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~~~I~~N~I~g~~~ 180 (455)
T TIGR03808 106 PSLLSSEGADGIG-LSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVSGDISGNTITQIAV 180 (455)
T ss_pred ceEEEEecCCCeE-EEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCcceEecceEecccc
Confidence 5677778899999 99999998863 3688999999999999999863 135555 22222 222
Q ss_pred ceEEeecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEe
Q 038535 81 GLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIG 121 (225)
Q Consensus 81 D~i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iG 121 (225)
.. |.. -.+++..|++.++....++||.|-
T Consensus 181 ~~--I~l----------w~S~g~~V~~N~I~g~RD~gi~i~ 209 (455)
T TIGR03808 181 TA--IVS----------FDALGLIVARNTIIGANDNGIEIL 209 (455)
T ss_pred ce--EEE----------eccCCCEEECCEEEccCCCCeEEE
Confidence 22 333 237889999998876657676654
No 30
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=96.74 E-value=0.013 Score=44.76 Aligned_cols=112 Identities=21% Similarity=0.149 Sum_probs=69.7
Q ss_pred CceeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCC---CCCCceecc-cceeeeCCc-eEEeecCC
Q 038535 15 RGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLS---APNTDGLDP-DCYIESGNG-LVAVKSGW 89 (225)
Q Consensus 15 rp~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~---~~ntDGid~-~c~i~~gDD-~i~iks~~ 89 (225)
....|.+..+..++ |++-+|.+ ..-.+.+....++.++++++..... .....++.+ +|.+....+ +|.++.
T Consensus 22 ~~~gi~~~~~~~~~-i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~-- 97 (158)
T PF13229_consen 22 GGDGIHVSGSSNIT-IENCTISN-GGYGIYVSGGSNVTISNNTISDNGSGIYVSGSSNITIENNRIENNGDYGIYISN-- 97 (158)
T ss_dssp SSECEEE-SSCESE-EES-EEES-STTSEEEECCES-EEES-EEES-SEEEECCS-CS-EEES-EEECSSS-SCE-TC--
T ss_pred CCeEEEEEcCCCeE-EECeEEEC-CCcEEEEecCCCeEEECeEEEEccceEEEEecCCceecCcEEEcCCCccEEEec--
Confidence 45778888888889 99999999 6778899888999999999998531 111222222 666664433 444442
Q ss_pred CCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcCC
Q 038535 90 DHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQ 142 (225)
Q Consensus 90 ~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~~ 142 (225)
+.+++.|++|++......|+.+.... -.+++|++|++.+..
T Consensus 98 ---------~~~~~~i~~n~~~~~~~~gi~~~~~~---~~~~~i~~n~i~~~~ 138 (158)
T PF13229_consen 98 ---------SSSNVTIENNTIHNNGGSGIYLEGGS---SPNVTIENNTISNNG 138 (158)
T ss_dssp ---------EECS-EEES-EEECCTTSSCEEEECC-----S-EEECEEEECES
T ss_pred ---------cCCCEEEEeEEEEeCcceeEEEECCC---CCeEEEEEEEEEeCc
Confidence 26789999999987645888886543 347788888887654
No 31
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=96.51 E-value=0.047 Score=45.58 Aligned_cols=98 Identities=20% Similarity=0.120 Sum_probs=54.5
Q ss_pred EEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCCceecc---------cceeeeCCceEEeecCC
Q 038535 19 VELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP---------DCYIESGNGLVAVKSGW 89 (225)
Q Consensus 19 i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~---------~c~i~~gDD~i~iks~~ 89 (225)
+.+..+.+++ |++.++.+. ...+++..|++++|++.++.... .||.+ ++.+.....+|.+..
T Consensus 38 i~~~~s~~~~-I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n~-----~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-- 108 (236)
T PF05048_consen 38 IYVENSDNNT-ISNNTISNN-RYGIHLMGSSNNTIENNTISNNG-----YGIYLMGSSNNTISNNTISNNGYGIYLYG-- 108 (236)
T ss_pred EEEEEcCCeE-EEeeEEECC-CeEEEEEccCCCEEEeEEEEccC-----CCEEEEcCCCcEEECCEecCCCceEEEee--
Confidence 3566666666 666666666 56677777777777777766632 45554 333333333443332
Q ss_pred CCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcC
Q 038535 90 DHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 90 ~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~ 141 (225)
+.+.+|+++++... ..||.+... .+.++++.+|.+.
T Consensus 109 ----------s~~~~I~~N~i~~~-~~GI~l~~s-----~~n~I~~N~i~~n 144 (236)
T PF05048_consen 109 ----------SSNNTISNNTISNN-GYGIYLSSS-----SNNTITGNTISNN 144 (236)
T ss_pred ----------CCceEEECcEEeCC-CEEEEEEeC-----CCCEEECeEEeCC
Confidence 44566666666533 566666432 4444555555444
No 32
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=96.10 E-value=0.23 Score=40.36 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=17.5
Q ss_pred EEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEc
Q 038535 103 IAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWM 140 (225)
Q Consensus 103 V~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~ 140 (225)
+.+.||.+... ..|+..++ .+++++||.+.+
T Consensus 166 ~~~~~~~~~~~-~~g~~~~~------~~~~i~n~~~~~ 196 (225)
T PF12708_consen 166 VIVNNCIFNGG-DNGIILGN------NNITISNNTFEG 196 (225)
T ss_dssp EEEECEEEESS-SCSEECEE------EEEEEECEEEES
T ss_pred EEECCccccCC-CceeEeec------ceEEEEeEEECC
Confidence 44455555555 45543333 567777777665
No 33
>smart00656 Amb_all Amb_all domain.
Probab=95.81 E-value=0.3 Score=39.79 Aligned_cols=114 Identities=11% Similarity=0.023 Sum_probs=70.2
Q ss_pred eeEEEEeecCeeEEeceEEeCCCC------ceEEeeeeecEEEEeEEEECC---------CCC-----CCCceecc-cce
Q 038535 17 HLVELMNSSNILIISNLTFCNSPS------RTIHPVYCRNGFVKGMTVLSP---------LSA-----PNTDGLDP-DCY 75 (225)
Q Consensus 17 ~~i~~~~~~nv~~i~gv~l~n~~~------w~i~~~~c~nV~v~~~~i~~~---------~~~-----~ntDGid~-~c~ 75 (225)
.-|.+..++||. |+.++|++... .++.+..+++|.|+.+++... .+. ..+|.+-+ +|.
T Consensus 32 ~gl~i~~~~NVI-irnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~ 110 (190)
T smart00656 32 GGLTIKSVSNVI-IRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNY 110 (190)
T ss_pred eEEEEEecceEE-EeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECce
Confidence 345676789999 99999998754 478889999999999999985 110 11233333 777
Q ss_pred eeeCCceEEeecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcC
Q 038535 76 IESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 76 i~~gDD~i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~ 141 (225)
+....-+..+.++..... ....+|++.++.+......+-++.. + .+++.|..+.+.
T Consensus 111 f~~h~~~~liG~~d~~~~----~~~~~vT~h~N~~~~~~~R~P~~r~---g---~~hv~NN~~~n~ 166 (190)
T smart00656 111 FHNHWKVMLLGHSDSDTD----DGKMRVTIAHNYFGNLRQRAPRVRF---G---YVHVYNNYYTGW 166 (190)
T ss_pred EecCCEEEEEccCCCccc----cccceEEEECcEEcCcccCCCcccC---C---EEEEEeeEEeCc
Confidence 765555555555321100 0134688888877543344444422 1 456666666554
No 34
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.67 E-value=0.08 Score=43.51 Aligned_cols=98 Identities=22% Similarity=0.269 Sum_probs=67.3
Q ss_pred EEeecCeeEEeceEEeCC---------------CCceEEeeeeecEEEEeEEEECCCCCCCCceecccceeeeCCceEEe
Q 038535 21 LMNSSNILIISNLTFCNS---------------PSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDPDCYIESGNGLVAV 85 (225)
Q Consensus 21 ~~~~~nv~~i~gv~l~n~---------------~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~~c~i~~gDD~i~i 85 (225)
..+++||. |++++|++. ....+.+..+++|-|+.+++.... + .|.-...|..+.+
T Consensus 42 ~~~~~NVI-irNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~-----~----~~~~~~~Dg~idi 111 (200)
T PF00544_consen 42 IKGASNVI-IRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGN-----F----ECNSDSSDGLIDI 111 (200)
T ss_dssp EESCEEEE-EES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETT-----S-----GGGSSSSSSEEE
T ss_pred ecCCCeEE-EECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccc-----c----ccccccCCceEEE
Confidence 35899999 999999982 334688888899999999988742 2 4444447888888
Q ss_pred ecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEecc----ccCcEEeEEEEeeEEEcC
Q 038535 86 KSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGRE----MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 86 ks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~----~~~~v~ni~~~n~~~~~~ 141 (225)
+.+ +.+|+|++|.|... ..+.-+|+. .... .+|+|.++.+.++
T Consensus 112 ~~~-----------s~~vTiS~n~f~~~-~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 112 KKG-----------SDNVTISNNIFDNH-NKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp ESS-----------TEEEEEES-EEEEE-EETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred EeC-----------CceEEEEchhcccc-ccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 764 78999999999765 556667775 2234 7888888888653
No 35
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=95.61 E-value=0.35 Score=42.17 Aligned_cols=15 Identities=20% Similarity=0.058 Sum_probs=11.2
Q ss_pred EEeeeeecEEEEeEE
Q 038535 43 IHPVYCRNGFVKGMT 57 (225)
Q Consensus 43 i~~~~c~nV~v~~~~ 57 (225)
+.+.-|.|++|.++-
T Consensus 95 ~~iki~sNkTivG~g 109 (345)
T COG3866 95 ITIKIGSNKTIVGSG 109 (345)
T ss_pred EEEeeccccEEEeec
Confidence 777778888877654
No 36
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=95.29 E-value=0.31 Score=40.56 Aligned_cols=103 Identities=21% Similarity=0.118 Sum_probs=73.5
Q ss_pred eeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCCceecc---------cceeeeCCceEEeec
Q 038535 17 HLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP---------DCYIESGNGLVAVKS 87 (225)
Q Consensus 17 ~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~---------~c~i~~gDD~i~iks 87 (225)
.-|.+..+++.. |++.++.+.. -.+.+..+.+++|++.++... ..||.+ ++.+.....+|.+..
T Consensus 14 ~Gi~l~~~~~~~-i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~ 86 (236)
T PF05048_consen 14 NGIYLWNSSNNS-IENNTISNSR-DGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMG 86 (236)
T ss_pred CcEEEEeCCCCE-EEcCEEEeCC-CEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEc
Confidence 567888899999 9998887554 466889999999999999985 357776 555555445666665
Q ss_pred CCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcCCCC
Q 038535 88 GWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQG 144 (225)
Q Consensus 88 ~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~~~G 144 (225)
+.+..|+++++... ..||.+... .+.++++.++.+...|
T Consensus 87 ------------s~~~~I~~N~i~~n-~~GI~l~~s-----~~~~I~~N~i~~~~~G 125 (236)
T PF05048_consen 87 ------------SSNNTISNNTISNN-GYGIYLYGS-----SNNTISNNTISNNGYG 125 (236)
T ss_pred ------------CCCcEEECCEecCC-CceEEEeeC-----CceEEECcEEeCCCEE
Confidence 34559999998866 458877532 3466777777644433
No 37
>PLN02480 Probable pectinesterase
Probab=91.90 E-value=2.2 Score=38.13 Aligned_cols=104 Identities=10% Similarity=0.049 Sum_probs=52.3
Q ss_pred eecCeeEEeceEEeCCC---------CceEEe-eeeecEEEEeEEEECCCCCC-CCceecc--cceeeeCCceEEeecCC
Q 038535 23 NSSNILIISNLTFCNSP---------SRTIHP-VYCRNGFVKGMTVLSPLSAP-NTDGLDP--DCYIESGNGLVAVKSGW 89 (225)
Q Consensus 23 ~~~nv~~i~gv~l~n~~---------~w~i~~-~~c~nV~v~~~~i~~~~~~~-ntDGid~--~c~i~~gDD~i~iks~~ 89 (225)
.++++. +++|+|+|+. ...+.+ ...+.+.+.+|.+.+..|-. ..-|-.. +|+|.-.=| +--|
T Consensus 130 ~a~~f~-a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~gR~yf~~C~IeG~VD---FIFG- 204 (343)
T PLN02480 130 EAPHFV-AFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYKGRHYYHSCYIQGSID---FIFG- 204 (343)
T ss_pred ECCCEE-EEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCCCCEEEEeCEEEeeee---EEcc-
Confidence 356666 6666666661 123333 34566666666666543211 0112122 666653222 1112
Q ss_pred CCCCccCCCCeecEEEEeEEEeCCCC------CEEEEeccccCcEEeEEEEeeEEEcC
Q 038535 90 DHDGIAMARPSSNIAVRRVSGTTPTC------SGVGIGREMSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 90 ~~~g~~~~~~~~nV~v~nc~~~~~~~------~gi~iGs~~~~~v~ni~~~n~~~~~~ 141 (225)
.-..+++||++.+... ..|.-.+.....-.-..|.||++...
T Consensus 205 ----------~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 205 ----------RGRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred ----------ceeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEccc
Confidence 2357888888875411 22333333223335678888888754
No 38
>PLN02773 pectinesterase
Probab=89.80 E-value=5.9 Score=35.00 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=52.0
Q ss_pred eecCeeEEeceEEeCCCC----ceEEe-eeeecEEEEeEEEECCCCCCCCc-eecc--cceeeeCCceEEeecCCCCCCc
Q 038535 23 NSSNILIISNLTFCNSPS----RTIHP-VYCRNGFVKGMTVLSPLSAPNTD-GLDP--DCYIESGNGLVAVKSGWDHDGI 94 (225)
Q Consensus 23 ~~~nv~~i~gv~l~n~~~----w~i~~-~~c~nV~v~~~~i~~~~~~~ntD-Gid~--~c~i~~gDD~i~iks~~~~~g~ 94 (225)
.++++. .++|+|+|... ..+.+ ...+.+.+.+|++.+..+-.-.+ |-.. +|+|.-.=|=| ++
T Consensus 100 ~a~~f~-a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~gr~yf~~c~IeG~VDFI-FG-------- 169 (317)
T PLN02773 100 EGEDFI-AENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCYIEGSVDFI-FG-------- 169 (317)
T ss_pred ECCCeE-EEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCCCCEEEEeeEEeecccEE-ee--------
Confidence 466666 66677666632 12221 13566666666666543211111 2122 56665332222 22
Q ss_pred cCCCCeecEEEEeEEEeCCCCCEEEEeccc-cCcEEeEEEEeeEEEcCC
Q 038535 95 AMARPSSNIAVRRVSGTTPTCSGVGIGREM-SGRIFNVTVNHLDVWMQQ 142 (225)
Q Consensus 95 ~~~~~~~nV~v~nc~~~~~~~~gi~iGs~~-~~~v~ni~~~n~~~~~~~ 142 (225)
.-..++++|++.+....-|.-.+.. ...-.-..|.||++....
T Consensus 170 -----~g~a~Fe~c~i~s~~~g~ITA~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 170 -----NSTALLEHCHIHCKSAGFITAQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred -----ccEEEEEeeEEEEccCcEEECCCCCCCCCCceEEEEccEEecCC
Confidence 2347888888876522222222211 122346788888887643
No 39
>PLN02773 pectinesterase
Probab=85.09 E-value=13 Score=32.80 Aligned_cols=77 Identities=9% Similarity=0.055 Sum_probs=44.5
Q ss_pred EEeeeeecEEEEeEEEECCCCCCCCcee--cc--------cceeeeCCceEEeecCCCCCCccCCCCeecEEEEeEEEeC
Q 038535 43 IHPVYCRNGFVKGMTVLSPLSAPNTDGL--DP--------DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTT 112 (225)
Q Consensus 43 i~~~~c~nV~v~~~~i~~~~~~~ntDGi--d~--------~c~i~~gDD~i~iks~~~~~g~~~~~~~~nV~v~nc~~~~ 112 (225)
.....++++.++||+|.|.......-.. .+ +|.|....|-+-.+.+ .-.++||++.+
T Consensus 96 Tv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~g-------------r~yf~~c~IeG 162 (317)
T PLN02773 96 TVIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYG-------------KQYLRDCYIEG 162 (317)
T ss_pred EEEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCCC-------------CEEEEeeEEee
Confidence 3445678999999999996321111111 11 6777766666655432 36677777765
Q ss_pred CCCCEEEEeccccCcEEeEEEEeeEEEc
Q 038535 113 PTCSGVGIGREMSGRIFNVTVNHLDVWM 140 (225)
Q Consensus 113 ~~~~gi~iGs~~~~~v~ni~~~n~~~~~ 140 (225)
. -=+=+|+ -...|++|++..
T Consensus 163 ~--VDFIFG~------g~a~Fe~c~i~s 182 (317)
T PLN02773 163 S--VDFIFGN------STALLEHCHIHC 182 (317)
T ss_pred c--ccEEeec------cEEEEEeeEEEE
Confidence 4 2233453 235677777753
No 40
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=81.05 E-value=32 Score=31.73 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=21.9
Q ss_pred CCCCceeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEe
Q 038535 12 KHTRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKG 55 (225)
Q Consensus 12 ~~~rp~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~ 55 (225)
++.-...|.+..|.+|. |+.-.- -+-...|..|.++++.+
T Consensus 142 nQ~i~stL~I~~~~gv~-v~~~~g---~ma~ylf~~c~~~k~~~ 181 (549)
T PF09251_consen 142 NQNIGSTLRIRSCSGVE-VENASG---TMAGYLFRGCHHCKVID 181 (549)
T ss_dssp T----EEEEEES-ECEE-EES-EE---EEEEEEEES-ECEEEES
T ss_pred cccceeEEEEeccCceE-EEcCcc---ceeeeeecccceEEEec
Confidence 45667888999999988 654321 12346677788777754
No 41
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=80.60 E-value=27 Score=32.18 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=48.7
Q ss_pred eeecEEEEeEEEECCCCCCCCceecccce--eeeCCce---EEeecCCCCCCccCCCCeecEEEEeEEEeCCCCCEEEEe
Q 038535 47 YCRNGFVKGMTVLSPLSAPNTDGLDPDCY--IESGNGL---VAVKSGWDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIG 121 (225)
Q Consensus 47 ~c~nV~v~~~~i~~~~~~~ntDGid~~c~--i~~gDD~---i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iG 121 (225)
.|-|+.++++....+-+ ||||++.. +.+..|- ..+ .++..+ +.| .|-.|+|...+.. .|+.+|
T Consensus 262 RnYnLqF~d~~~i~~~~----DG~Dl~aDtg~~~~~dR~~D~~l----aqYp~~-qLP-tnHiidNi~~~~~--lGVG~~ 329 (549)
T PF09251_consen 262 RNYNLQFRDSVTISPVW----DGFDLGADTGMGPETDRPGDYPL----AQYPWH-QLP-TNHIIDNILVRGS--LGVGIG 329 (549)
T ss_dssp -EBS-EEEEEEEES-SS----ESEEE-SS-SSSTTS--TTS--T----TTS-TT--------EEEEEEEES---SSESCE
T ss_pred ceeeEEEeccceEEEee----cceeccCCCCCCCCccCCCCcch----hhCchh-hCc-hhhhhhhhheecc--ceeeee
Confidence 56788888888888743 88887433 3222110 000 111111 234 3456888888764 888887
Q ss_pred cc-ccCcEEeEEEEeeEEEcC---CCCcEEEeEEEee
Q 038535 122 RE-MSGRIFNVTVNHLDVWMQ---QQGSYKDRLRLYG 154 (225)
Q Consensus 122 s~-~~~~v~ni~~~n~~~~~~---~~Gg~v~nI~~~~ 154 (225)
.. ..+.++||++++|.=.+. ..+-.+.||++-+
T Consensus 330 ~DG~~~yvsni~~~d~~g~G~~~~~~~~~ftNitvId 366 (549)
T PF09251_consen 330 MDGKGGYVSNITVQDCAGAGIFIRGTNKVFTNITVID 366 (549)
T ss_dssp EECCS-EEEEEEEES-SSESEEEECCS-EEEEEEEES
T ss_pred ecCCCceEeeEEeecccCCceEEeecCCceeeeEEEe
Confidence 76 455789999888853211 1234678887764
No 42
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=78.46 E-value=24 Score=32.00 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=64.5
Q ss_pred eecCeeEEeceEEeCCC-CceEEeeeeecEEEEeEEEECCCCC--CCCceecc-cceeeeCCceEEeecCCCCCCccCCC
Q 038535 23 NSSNILIISNLTFCNSP-SRTIHPVYCRNGFVKGMTVLSPLSA--PNTDGLDP-DCYIESGNGLVAVKSGWDHDGIAMAR 98 (225)
Q Consensus 23 ~~~nv~~i~gv~l~n~~-~w~i~~~~c~nV~v~~~~i~~~~~~--~ntDGid~-~c~i~~gDD~i~iks~~~~~g~~~~~ 98 (225)
.-.+|+ +.++.|...+ +-.+.+..-.++++.++.+.+.... .-..|..+ .|.|... ..+|.+ +
T Consensus 119 gM~~Vt-F~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~~~~~VrGC~F~~C--~~gi~~----------~ 185 (386)
T PF01696_consen 119 GMEGVT-FVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFHGTCLESWAGGEVRGCTFYGC--WKGIVS----------R 185 (386)
T ss_pred eeeeeE-EEEEEEecCCccceeEEEecceEEEEeeEEecCcceeEEEcCCcEEeeeEEEEE--EEEeec----------C
Confidence 345778 8888888877 6678888888999999999986420 11133344 8888654 333433 2
Q ss_pred CeecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeE
Q 038535 99 PSSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLD 137 (225)
Q Consensus 99 ~~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~ 137 (225)
+...+.|++|+|.. .-|.|-++....+++=.+.||.
T Consensus 186 ~~~~lsVk~C~Fek---C~igi~s~G~~~i~hn~~~ec~ 221 (386)
T PF01696_consen 186 GKSKLSVKKCVFEK---CVIGIVSEGPARIRHNCASECG 221 (386)
T ss_pred CcceEEeeheeeeh---eEEEEEecCCeEEecceecccc
Confidence 46788889999874 4666655555555555555544
No 43
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=77.82 E-value=42 Score=32.06 Aligned_cols=39 Identities=3% Similarity=-0.145 Sum_probs=19.5
Q ss_pred cEEEEeEEEeCC---------CCCEEEEecc-ccCcEEeEEEEeeEEEc
Q 038535 102 NIAVRRVSGTTP---------TCSGVGIGRE-MSGRIFNVTVNHLDVWM 140 (225)
Q Consensus 102 nV~v~nc~~~~~---------~~~gi~iGs~-~~~~v~ni~~~n~~~~~ 140 (225)
.++++||.+... ..+.|...+. ....-.-+.|.||++..
T Consensus 400 ~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~ 448 (553)
T PLN02708 400 AAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLING 448 (553)
T ss_pred eEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEec
Confidence 466777766532 0123333222 22233567777777754
No 44
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=77.74 E-value=8.3 Score=33.71 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=27.4
Q ss_pred eeEEEEeecCeeEEeceEEeCC-CCc---------eEEeeeeecEEEEeEEEECC
Q 038535 17 HLVELMNSSNILIISNLTFCNS-PSR---------TIHPVYCRNGFVKGMTVLSP 61 (225)
Q Consensus 17 ~~i~~~~~~nv~~i~gv~l~n~-~~w---------~i~~~~c~nV~v~~~~i~~~ 61 (225)
.+++.++.+++. |++++-+|- |.+ ++.++.|+|..|+|+...++
T Consensus 260 qlvhvengkhfv-irnvkaknitpdfskkagidnatvaiygcdnfvidni~mvns 313 (464)
T PRK10123 260 QLIHVENGKHFV-IRNIKAKNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINS 313 (464)
T ss_pred heEEecCCcEEE-EEeeeccccCCCchhhcCCCcceEEEEcccceEEeccccccc
Confidence 456666666666 666666552 222 56677777777777766664
No 45
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=76.32 E-value=58 Score=29.23 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=47.8
Q ss_pred CceeEEEEeecCeeEEeceEEeCCCC-----------------------------ceEEeeeeecEEEEeEEEECCCC--
Q 038535 15 RGHLVELMNSSNILIISNLTFCNSPS-----------------------------RTIHPVYCRNGFVKGMTVLSPLS-- 63 (225)
Q Consensus 15 rp~~i~~~~~~nv~~i~gv~l~n~~~-----------------------------w~i~~~~c~nV~v~~~~i~~~~~-- 63 (225)
+...+.. .+.++. |+|++++++.. ..+-+..+.++.+++.+|....+
T Consensus 68 ~G~~vtv-~aP~~~-v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r 145 (408)
T COG3420 68 KGSYVTV-AAPDVI-VEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLADLR 145 (408)
T ss_pred cccEEEE-eCCCce-eeeEEEecCCCCcccccceEEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccccc
Confidence 3344444 378888 99999986632 24667778888899988887543
Q ss_pred -CCCCceecc---------cceeeeCCceEEeec
Q 038535 64 -APNTDGLDP---------DCYIESGNGLVAVKS 87 (225)
Q Consensus 64 -~~ntDGid~---------~c~i~~gDD~i~iks 87 (225)
..-..||.+ ...++-+.|||-.+.
T Consensus 146 ~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~ 179 (408)
T COG3420 146 VAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT 179 (408)
T ss_pred hhhccCceEEEcCCCcEEEcCccccccceEEEcc
Confidence 234567776 455666677776665
No 46
>PLN02665 pectinesterase family protein
Probab=74.03 E-value=40 Score=30.45 Aligned_cols=40 Identities=5% Similarity=-0.188 Sum_probs=21.1
Q ss_pred cEEEEeEEEeCCCCC----EEEEecc-ccCcEEeEEEEeeEEEcCC
Q 038535 102 NIAVRRVSGTTPTCS----GVGIGRE-MSGRIFNVTVNHLDVWMQQ 142 (225)
Q Consensus 102 nV~v~nc~~~~~~~~----gi~iGs~-~~~~v~ni~~~n~~~~~~~ 142 (225)
..++++|++... .. .|.-.+. ....-.-..|.||++....
T Consensus 229 ~a~fe~C~i~s~-~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 229 KSLYLNTELHVV-GDGGLRVITAQARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred ceeeEccEEEEe-cCCCcEEEEcCCCCCCCCCceEEEEeeEEecCC
Confidence 456777777654 22 2222221 1112356678888887653
No 47
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=72.79 E-value=64 Score=29.71 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=25.6
Q ss_pred EEeecCeeEEeceEEeCCCC--------ceEEe-eeeecEEEEeEEEECCCC
Q 038535 21 LMNSSNILIISNLTFCNSPS--------RTIHP-VYCRNGFVKGMTVLSPLS 63 (225)
Q Consensus 21 ~~~~~nv~~i~gv~l~n~~~--------w~i~~-~~c~nV~v~~~~i~~~~~ 63 (225)
...++++. .++|+|+|+.. ..+.+ ...+.+.+.+|.+.+..|
T Consensus 202 ~v~ad~F~-a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QD 252 (422)
T PRK10531 202 WSQNNGLQ-LQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQD 252 (422)
T ss_pred EEECCCEE-EEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccc
Confidence 34567777 78888877743 22222 246677777777776543
No 48
>PLN02497 probable pectinesterase
Probab=67.79 E-value=90 Score=27.80 Aligned_cols=40 Identities=3% Similarity=-0.228 Sum_probs=21.0
Q ss_pred cEEEEeEEEeCCCC-------CEEEEecc-ccCcEEeEEEEeeEEEcC
Q 038535 102 NIAVRRVSGTTPTC-------SGVGIGRE-MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 102 nV~v~nc~~~~~~~-------~gi~iGs~-~~~~v~ni~~~n~~~~~~ 141 (225)
...++||.+.+... ..|.-.+. ....-.-..|.||.+...
T Consensus 192 ~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 192 QSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGT 239 (331)
T ss_pred eEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccC
Confidence 46777887764210 22222221 222335678888888654
No 49
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=67.71 E-value=94 Score=29.68 Aligned_cols=41 Identities=5% Similarity=0.031 Sum_probs=22.3
Q ss_pred ecEEEEeEEEeCCC-----CCEEEEecc-ccCcEEeEEEEeeEEEcC
Q 038535 101 SNIAVRRVSGTTPT-----CSGVGIGRE-MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 101 ~nV~v~nc~~~~~~-----~~gi~iGs~-~~~~v~ni~~~n~~~~~~ 141 (225)
-..+++||.+.... .+.|.-.+. ....-.-+.|.||++...
T Consensus 392 a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 392 AAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred ceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecC
Confidence 35777777775431 122333221 223345788888888754
No 50
>PLN02682 pectinesterase family protein
Probab=67.57 E-value=96 Score=28.06 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=64.3
Q ss_pred EEEeecCeeEEeceEEeCCCC---------ceEEe-eeeecEEEEeEEEECCCCCCCC-ceecc--cceeeeCCceEEee
Q 038535 20 ELMNSSNILIISNLTFCNSPS---------RTIHP-VYCRNGFVKGMTVLSPLSAPNT-DGLDP--DCYIESGNGLVAVK 86 (225)
Q Consensus 20 ~~~~~~nv~~i~gv~l~n~~~---------w~i~~-~~c~nV~v~~~~i~~~~~~~nt-DGid~--~c~i~~gDD~i~ik 86 (225)
....++++. .++|+|+|+.. ..+.+ ...+...+.+|.+.+..|-.-. -|-.. +|+|.-.=|=| +
T Consensus 158 ~~v~a~~F~-a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~gRqyf~~C~IeG~VDFI-F- 234 (369)
T PLN02682 158 FAVNSPYFI-AKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHLGRHYFKDCYIEGSVDFI-F- 234 (369)
T ss_pred EEEECCCeE-EEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECCCCEEEEeeEEcccccEE-e-
Confidence 345678899 99999999642 23333 3578899999999986431111 12222 88886443322 2
Q ss_pred cCCCCCCccCCCCeecEEEEeEEEeCCC--CCEEEEecc-ccCcEEeEEEEeeEEEcC
Q 038535 87 SGWDHDGIAMARPSSNIAVRRVSGTTPT--CSGVGIGRE-MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 87 s~~~~~g~~~~~~~~nV~v~nc~~~~~~--~~gi~iGs~-~~~~v~ni~~~n~~~~~~ 141 (225)
| .-..++++|++.... ...|.-.+. ....-.-..|.||++...
T Consensus 235 -G-----------~g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 235 -G-----------NGLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred -c-----------CceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEEEeeEecCC
Confidence 2 245899999887521 133333332 222346788999999764
No 51
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=67.18 E-value=1.2e+02 Score=29.24 Aligned_cols=41 Identities=2% Similarity=-0.146 Sum_probs=22.1
Q ss_pred ecEEEEeEEEeCCC-----CCEEEEecc-ccCcEEeEEEEeeEEEcC
Q 038535 101 SNIAVRRVSGTTPT-----CSGVGIGRE-MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 101 ~nV~v~nc~~~~~~-----~~gi~iGs~-~~~~v~ni~~~n~~~~~~ 141 (225)
-..+++||.+.... .+.|.-.+. ....-.-+.|.||++...
T Consensus 441 a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 441 AAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred eeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecC
Confidence 45777788776431 123333222 122345678888888753
No 52
>PLN02634 probable pectinesterase
Probab=67.02 E-value=93 Score=28.05 Aligned_cols=40 Identities=3% Similarity=-0.148 Sum_probs=22.1
Q ss_pred cEEEEeEEEeCCC--CCEEEEecc-ccCcEEeEEEEeeEEEcC
Q 038535 102 NIAVRRVSGTTPT--CSGVGIGRE-MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 102 nV~v~nc~~~~~~--~~gi~iGs~-~~~~v~ni~~~n~~~~~~ 141 (225)
...++||++.+.. ...|.-.+. ....-.-..|.||++...
T Consensus 224 ~a~Fe~C~I~s~~~~~g~ITA~~R~~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 224 RSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred eEEEeccEEEEecCCCcEEEeCCCCCCCCCcEEEEEcCEEcCC
Confidence 4578888877531 123333222 222335678888888654
No 53
>PLN02480 Probable pectinesterase
Probab=66.91 E-value=60 Score=29.03 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=13.8
Q ss_pred eeeeecEEEEeEEEECC
Q 038535 45 PVYCRNGFVKGMTVLSP 61 (225)
Q Consensus 45 ~~~c~nV~v~~~~i~~~ 61 (225)
....+++.++||+|.|.
T Consensus 128 tV~a~~f~a~nLTf~Nt 144 (343)
T PLN02480 128 TVEAPHFVAFGISIRND 144 (343)
T ss_pred EEECCCEEEEeeEEEec
Confidence 34568899999999996
No 54
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=66.50 E-value=82 Score=26.83 Aligned_cols=71 Identities=11% Similarity=0.062 Sum_probs=36.9
Q ss_pred eecEEEEeEEEeCCCCCEEEEeccccCcEEeEEEEeeEEEcCCCCcEEEeEEEee-cCCCCcCCC---CCCcEEeEEEEE
Q 038535 100 SSNIAVRRVSGTTPTCSGVGIGREMSGRIFNVTVNHLDVWMQQQGSYKDRLRLYG-HPKEGWDPK---AIPKISGISFVN 175 (225)
Q Consensus 100 ~~nV~v~nc~~~~~~~~gi~iGs~~~~~v~ni~~~n~~~~~~~~Gg~v~nI~~~~-~~~~~~~~~---~~~~i~~It~~n 175 (225)
..++.|++..+... ..||++-....+ ++| .++|-.+.+...| |.... .||.....+ +.-.|++=..-|
T Consensus 150 i~~~vI~GN~~~~~-~~Gi~i~~~~~~-~~n-~I~NN~I~~N~~G-----i~~~~~~pDlG~~s~~~~g~N~~~~N~~~D 221 (246)
T PF07602_consen 150 INGNVISGNSIYFN-KTGISISDNAAP-VEN-KIENNIIENNNIG-----IVAIGDAPDLGTGSEGSPGNNIFRNNGRYD 221 (246)
T ss_pred ccceEeecceEEec-CcCeEEEcccCC-ccc-eeeccEEEeCCcC-----eEeeccCCccccCCCCCCCCcEEecCccee
Confidence 56777777777665 578888654443 333 3355566554444 33331 155443222 112555555555
Q ss_pred EEE
Q 038535 176 VVS 178 (225)
Q Consensus 176 i~~ 178 (225)
|..
T Consensus 222 l~~ 224 (246)
T PF07602_consen 222 LNN 224 (246)
T ss_pred eEe
Confidence 555
No 55
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=66.42 E-value=89 Score=29.76 Aligned_cols=40 Identities=5% Similarity=-0.072 Sum_probs=21.6
Q ss_pred cEEEEeEEEeCCC-----CCEEEEecc-ccCcEEeEEEEeeEEEcC
Q 038535 102 NIAVRRVSGTTPT-----CSGVGIGRE-MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 102 nV~v~nc~~~~~~-----~~gi~iGs~-~~~~v~ni~~~n~~~~~~ 141 (225)
..+++||.+.... ...|.-.+. ....-.-+.|.||++...
T Consensus 389 ~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 389 AAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred eeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccC
Confidence 4777778776431 123333221 222345678888888653
No 56
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=66.04 E-value=1e+02 Score=29.11 Aligned_cols=106 Identities=8% Similarity=0.082 Sum_probs=62.8
Q ss_pred EeecCeeEEeceEEeCCCCc----eEEe-eeeecEEEEeEEEECCCCCCCC-ceecc--cceeeeCCceEEeecCCCCCC
Q 038535 22 MNSSNILIISNLTFCNSPSR----TIHP-VYCRNGFVKGMTVLSPLSAPNT-DGLDP--DCYIESGNGLVAVKSGWDHDG 93 (225)
Q Consensus 22 ~~~~nv~~i~gv~l~n~~~w----~i~~-~~c~nV~v~~~~i~~~~~~~nt-DGid~--~c~i~~gDD~i~iks~~~~~g 93 (225)
...+++. .++|+|+|.... .+.+ ...+...+.+|.+.+..+-.-. -|-.. +|+|.-.=|=| ++.
T Consensus 267 v~~~~F~-a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~rqyy~~C~I~G~vDFI-FG~------ 338 (497)
T PLN02698 267 ITGDGFI-ARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAALRQFYRECDIYGTIDFI-FGN------ 338 (497)
T ss_pred EECCCeE-EEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCCcEEEEeeEEEeccceE-ecc------
Confidence 3578899 999999988643 3332 2578888999999875431100 01122 78886433322 222
Q ss_pred ccCCCCeecEEEEeEEEeCCC-----CCEEEE-eccccCcEEeEEEEeeEEEcCC
Q 038535 94 IAMARPSSNIAVRRVSGTTPT-----CSGVGI-GREMSGRIFNVTVNHLDVWMQQ 142 (225)
Q Consensus 94 ~~~~~~~~nV~v~nc~~~~~~-----~~gi~i-Gs~~~~~v~ni~~~n~~~~~~~ 142 (225)
-..+++||.+.... .+.|.- |......-.-+.|.||++....
T Consensus 339 -------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 339 -------AAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred -------cceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 34789999886431 112333 2222234467999999998653
No 57
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=65.42 E-value=58 Score=31.13 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=14.9
Q ss_pred EeeeeecEEEEeEEEECCC
Q 038535 44 HPVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 44 ~~~~c~nV~v~~~~i~~~~ 62 (225)
.....+++..+|++|.|..
T Consensus 325 ~~v~~~~f~a~~it~~Nta 343 (553)
T PLN02708 325 VGVLGDGFMARDLTIQNTA 343 (553)
T ss_pred EEEEcCCeEEEeeEEEcCC
Confidence 3456789999999999964
No 58
>PLN02176 putative pectinesterase
Probab=64.05 E-value=1.1e+02 Score=27.40 Aligned_cols=40 Identities=3% Similarity=-0.183 Sum_probs=20.9
Q ss_pred cEEEEeEEEeCCC--------CCEEEEecc-ccCcEEeEEEEeeEEEcC
Q 038535 102 NIAVRRVSGTTPT--------CSGVGIGRE-MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 102 nV~v~nc~~~~~~--------~~gi~iGs~-~~~~v~ni~~~n~~~~~~ 141 (225)
..+++||++.... ...|.-.+. ....-.-..|.||++...
T Consensus 198 ~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 246 (340)
T PLN02176 198 QSIFEGCTLKLTLGIYPPNEPYGTITAQGRPSPSDKGGFVFKDCTVTGV 246 (340)
T ss_pred eEEEeccEEEEecccCCCCCCcEEEEeCCCCCCCCCcEEEEECCEEccC
Confidence 4677788776420 112222221 112335678888888754
No 59
>PLN02304 probable pectinesterase
Probab=64.04 E-value=1.1e+02 Score=27.83 Aligned_cols=14 Identities=0% Similarity=-0.230 Sum_probs=9.3
Q ss_pred EEeEEEEeeEEEcC
Q 038535 128 IFNVTVNHLDVWMQ 141 (225)
Q Consensus 128 v~ni~~~n~~~~~~ 141 (225)
-.-..|.||.+...
T Consensus 274 ~~GfvF~~C~itg~ 287 (379)
T PLN02304 274 NTGFSFVNCTIGGT 287 (379)
T ss_pred CceEEEECCEEccC
Confidence 35677888887653
No 60
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=63.91 E-value=59 Score=30.95 Aligned_cols=20 Identities=15% Similarity=0.064 Sum_probs=15.1
Q ss_pred EEeeeeecEEEEeEEEECCC
Q 038535 43 IHPVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 43 i~~~~c~nV~v~~~~i~~~~ 62 (225)
......+++..+|++|.|..
T Consensus 313 T~~v~~~~F~a~nit~~Nta 332 (537)
T PLN02506 313 TVAVSGRGFIARDITFRNTA 332 (537)
T ss_pred EEEEEcCCeEEEeeEEEeCC
Confidence 34456788899999999864
No 61
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=62.88 E-value=1.4e+02 Score=28.39 Aligned_cols=40 Identities=0% Similarity=-0.096 Sum_probs=21.2
Q ss_pred ecEEEEeEEEeCCC-----CCEEEEecc-ccCcEEeEEEEeeEEEc
Q 038535 101 SNIAVRRVSGTTPT-----CSGVGIGRE-MSGRIFNVTVNHLDVWM 140 (225)
Q Consensus 101 ~nV~v~nc~~~~~~-----~~gi~iGs~-~~~~v~ni~~~n~~~~~ 140 (225)
-.++++||.+.... .+.|.-.+. ....-.-+.|.||++..
T Consensus 382 a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~ 427 (538)
T PLN03043 382 AAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEA 427 (538)
T ss_pred ceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEec
Confidence 34677777765421 133433322 11233567888888765
No 62
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=62.55 E-value=1.2e+02 Score=29.75 Aligned_cols=104 Identities=7% Similarity=0.040 Sum_probs=49.0
Q ss_pred eecCeeEEeceEEeCCCC----ceEEee-eeecEEEEeEEEECCCCCCCCc-eecc--cceeeeCCceEEeecCCCCCCc
Q 038535 23 NSSNILIISNLTFCNSPS----RTIHPV-YCRNGFVKGMTVLSPLSAPNTD-GLDP--DCYIESGNGLVAVKSGWDHDGI 94 (225)
Q Consensus 23 ~~~nv~~i~gv~l~n~~~----w~i~~~-~c~nV~v~~~~i~~~~~~~ntD-Gid~--~c~i~~gDD~i~iks~~~~~g~ 94 (225)
..+++. .++|+|+|... ..+.+. ..+...+.+|.|.+..+-.-.+ |-.. +|+|.-.=|=| -|
T Consensus 335 ~g~~F~-a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFI---FG------ 404 (670)
T PLN02217 335 VGDHFI-AKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFL---FG------ 404 (670)
T ss_pred ECCCeE-EEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEE---ec------
Confidence 356666 66666666532 222222 3556666666666533211000 1111 55554322211 11
Q ss_pred cCCCCeecEEEEeEEEeCCC-----CCEEEEecc-ccCcEEeEEEEeeEEEcC
Q 038535 95 AMARPSSNIAVRRVSGTTPT-----CSGVGIGRE-MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 95 ~~~~~~~nV~v~nc~~~~~~-----~~gi~iGs~-~~~~v~ni~~~n~~~~~~ 141 (225)
.-..+++||.+.... .+.|.-.+. ....-.-+.|.||++...
T Consensus 405 -----~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 405 -----DAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred -----CceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecC
Confidence 234778888776431 112222221 122345688888888764
No 63
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=61.81 E-value=43 Score=29.24 Aligned_cols=13 Identities=8% Similarity=-0.000 Sum_probs=6.4
Q ss_pred eecEEEEeEEEEC
Q 038535 48 CRNGFVKGMTVLS 60 (225)
Q Consensus 48 c~nV~v~~~~i~~ 60 (225)
.+++.++||+|.|
T Consensus 86 a~~f~~~nit~~N 98 (298)
T PF01095_consen 86 ADDFTAENITFEN 98 (298)
T ss_dssp STT-EEEEEEEEE
T ss_pred ccceeeeeeEEec
Confidence 4455555555555
No 64
>PLN02682 pectinesterase family protein
Probab=61.37 E-value=1e+02 Score=27.86 Aligned_cols=19 Identities=16% Similarity=0.043 Sum_probs=14.7
Q ss_pred EeeeeecEEEEeEEEECCC
Q 038535 44 HPVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 44 ~~~~c~nV~v~~~~i~~~~ 62 (225)
.....+++.++|++|.|..
T Consensus 158 ~~v~a~~F~a~nlTf~Nt~ 176 (369)
T PLN02682 158 FAVNSPYFIAKNITFKNTA 176 (369)
T ss_pred EEEECCCeEEEeeEEEccc
Confidence 3445678999999999963
No 65
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=61.03 E-value=30 Score=20.50 Aligned_cols=40 Identities=28% Similarity=0.127 Sum_probs=29.8
Q ss_pred EEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEEC
Q 038535 19 VELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLS 60 (225)
Q Consensus 19 i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~ 60 (225)
|.+..+.+.+ |++=++.+... .|++..+.+-++++-++..
T Consensus 2 I~l~~s~~~~-i~~N~i~~~~~-GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNT-LENNTASNNSY-GIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCE-EECcEEeCCCC-EEEEEeCCCCEeECCEEEc
Confidence 5667777778 88888877777 8888888777777666654
No 66
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=60.98 E-value=74 Score=30.51 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=10.7
Q ss_pred eeeecEEEEeEEEECC
Q 038535 46 VYCRNGFVKGMTVLSP 61 (225)
Q Consensus 46 ~~c~nV~v~~~~i~~~ 61 (225)
...+++..+|++|.|.
T Consensus 337 v~~~~F~a~nitf~Nt 352 (566)
T PLN02713 337 VVGQNFVAVNITFRNT 352 (566)
T ss_pred EECCCeEEEeeEEEeC
Confidence 3456777777777774
No 67
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=60.56 E-value=1.5e+02 Score=28.38 Aligned_cols=14 Identities=0% Similarity=0.114 Sum_probs=9.3
Q ss_pred EEeEEEEeeEEEcC
Q 038535 128 IFNVTVNHLDVWMQ 141 (225)
Q Consensus 128 v~ni~~~n~~~~~~ 141 (225)
-.-+.|.||++...
T Consensus 419 ~~G~vf~~c~i~~~ 432 (541)
T PLN02416 419 DTGISIQNCSILAT 432 (541)
T ss_pred CCEEEEEeeEEecC
Confidence 35677788877643
No 68
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=59.34 E-value=1.1e+02 Score=29.06 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=12.1
Q ss_pred eeeeecEEEEeEEEECCC
Q 038535 45 PVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 45 ~~~c~nV~v~~~~i~~~~ 62 (225)
....+++..+|++|.|..
T Consensus 289 ~v~~~~F~a~nitf~Nta 306 (520)
T PLN02201 289 AVSGRGFIARDITFQNTA 306 (520)
T ss_pred EEECCCeEEEeeEEEECC
Confidence 345567777777777753
No 69
>PLN02314 pectinesterase
Probab=59.33 E-value=1.5e+02 Score=28.52 Aligned_cols=42 Identities=0% Similarity=-0.009 Sum_probs=22.6
Q ss_pred ecEEEEeEEEeCCC-----CCEEEEecc-ccCcEEeEEEEeeEEEcCC
Q 038535 101 SNIAVRRVSGTTPT-----CSGVGIGRE-MSGRIFNVTVNHLDVWMQQ 142 (225)
Q Consensus 101 ~nV~v~nc~~~~~~-----~~gi~iGs~-~~~~v~ni~~~n~~~~~~~ 142 (225)
-..+++||.+.... .+.|.-.+. ....-.-+.|.||++....
T Consensus 434 a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 434 AAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred ceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCC
Confidence 34677777776431 122332222 1233456788888887653
No 70
>PLN02916 pectinesterase family protein
Probab=59.04 E-value=97 Score=29.25 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=11.7
Q ss_pred eeeecEEEEeEEEECCC
Q 038535 46 VYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 46 ~~c~nV~v~~~~i~~~~ 62 (225)
...+++..+|++|.|..
T Consensus 274 v~~~~F~A~nitf~Nta 290 (502)
T PLN02916 274 VSGDGFWARDITFENTA 290 (502)
T ss_pred EECCCEEEEeeEEEeCC
Confidence 34567777888888753
No 71
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=59.01 E-value=35 Score=29.82 Aligned_cols=103 Identities=11% Similarity=0.132 Sum_probs=45.3
Q ss_pred eecCeeEEeceEEeCCCCc------eEEeeeeecEEEEeEEEECCCCCCCCce-ecc--cceeeeCCceEEeecCCCCCC
Q 038535 23 NSSNILIISNLTFCNSPSR------TIHPVYCRNGFVKGMTVLSPLSAPNTDG-LDP--DCYIESGNGLVAVKSGWDHDG 93 (225)
Q Consensus 23 ~~~nv~~i~gv~l~n~~~w------~i~~~~c~nV~v~~~~i~~~~~~~ntDG-id~--~c~i~~gDD~i~iks~~~~~g 93 (225)
..+++. +++|+|.|.... .+.. ..+.+.+.+|.+.+..+-.-.++ -.. ||+|.-.-|=| +..
T Consensus 85 ~a~~f~-~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~~r~y~~~c~IeG~vDFI-fG~------ 155 (298)
T PF01095_consen 85 NADDFT-AENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANGGRQYFKNCYIEGNVDFI-FGN------ 155 (298)
T ss_dssp -STT-E-EEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-EEE-SSEEEEES-EEEESEEEE-EES------
T ss_pred ccccee-eeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccceeeeccceeEEEeeEEEecCcEE-ECC------
Confidence 467777 888888775321 2332 45677777777776532110011 011 67776444333 222
Q ss_pred ccCCCCeecEEEEeEEEeCCCC-----CEEEEecc-ccCcEEeEEEEeeEEEcC
Q 038535 94 IAMARPSSNIAVRRVSGTTPTC-----SGVGIGRE-MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 94 ~~~~~~~~nV~v~nc~~~~~~~-----~gi~iGs~-~~~~v~ni~~~n~~~~~~ 141 (225)
-..++++|++..... ..|.-.+. ....-..+.|.||.+...
T Consensus 156 -------~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 156 -------GTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp -------SEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEES
T ss_pred -------eeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecC
Confidence 235677777664210 12222221 122345667777777653
No 72
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=58.40 E-value=1.7e+02 Score=27.95 Aligned_cols=40 Identities=0% Similarity=-0.098 Sum_probs=20.6
Q ss_pred ecEEEEeEEEeCCC-----CCEEEEecc-ccCcEEeEEEEeeEEEc
Q 038535 101 SNIAVRRVSGTTPT-----CSGVGIGRE-MSGRIFNVTVNHLDVWM 140 (225)
Q Consensus 101 ~nV~v~nc~~~~~~-----~~gi~iGs~-~~~~v~ni~~~n~~~~~ 140 (225)
-..+++||.+.... .+-|.-.+. ....-.-+.|.||++..
T Consensus 381 a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~ 426 (539)
T PLN02995 381 AAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILP 426 (539)
T ss_pred cceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEec
Confidence 34677777765431 012222221 11234567888888876
No 73
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=58.38 E-value=1.8e+02 Score=28.07 Aligned_cols=41 Identities=2% Similarity=0.032 Sum_probs=22.8
Q ss_pred ecEEEEeEEEeCCC-----CCEEEEecc-ccCcEEeEEEEeeEEEcC
Q 038535 101 SNIAVRRVSGTTPT-----CSGVGIGRE-MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 101 ~nV~v~nc~~~~~~-----~~gi~iGs~-~~~~v~ni~~~n~~~~~~ 141 (225)
-..+++||.+.... .+.|.-.+. ....-.-+.|.||.+...
T Consensus 429 a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 429 AAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred ceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecC
Confidence 45677888776431 123333322 122346788888888753
No 74
>PLN02916 pectinesterase family protein
Probab=57.83 E-value=1.7e+02 Score=27.65 Aligned_cols=106 Identities=8% Similarity=0.033 Sum_probs=65.2
Q ss_pred EEeecCeeEEeceEEeCCCC----ceEEee-eeecEEEEeEEEECCCCCCCCc-eecc--cceeeeCCceEEeecCCCCC
Q 038535 21 LMNSSNILIISNLTFCNSPS----RTIHPV-YCRNGFVKGMTVLSPLSAPNTD-GLDP--DCYIESGNGLVAVKSGWDHD 92 (225)
Q Consensus 21 ~~~~~nv~~i~gv~l~n~~~----w~i~~~-~c~nV~v~~~~i~~~~~~~ntD-Gid~--~c~i~~gDD~i~iks~~~~~ 92 (225)
....+++. .++++|.|... ..+.+. ..+...+.+|.+.+..+-.-.. |-.. +|+|.-.=|=| -|
T Consensus 273 ~v~~~~F~-A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFI---FG---- 344 (502)
T PLN02916 273 GVSGDGFW-ARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSLRQFYRDCHIYGTIDFI---FG---- 344 (502)
T ss_pred EEECCCEE-EEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCCCEEEEecEEeccccee---cc----
Confidence 44578999 99999999843 333333 5788999999999864311101 1122 88887543322 22
Q ss_pred CccCCCCeecEEEEeEEEeCCC-----CCEEEEecc-ccCcEEeEEEEeeEEEcC
Q 038535 93 GIAMARPSSNIAVRRVSGTTPT-----CSGVGIGRE-MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 93 g~~~~~~~~nV~v~nc~~~~~~-----~~gi~iGs~-~~~~v~ni~~~n~~~~~~ 141 (225)
.-..+++||.+.... ...|.-.+. ....-.-+.|.||++...
T Consensus 345 -------~a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 345 -------DAAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred -------CceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 245888999886531 133433332 223346889999999764
No 75
>PLN02176 putative pectinesterase
Probab=57.76 E-value=1.4e+02 Score=26.68 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=14.7
Q ss_pred eeeeecEEEEeEEEECCC
Q 038535 45 PVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 45 ~~~c~nV~v~~~~i~~~~ 62 (225)
....+++..+|++|.|..
T Consensus 118 ~v~a~~F~a~nlT~~Nt~ 135 (340)
T PLN02176 118 TSYASNIIITGITFKNTY 135 (340)
T ss_pred EEECCCEEEEeeEEEeCC
Confidence 346789999999999964
No 76
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=57.62 E-value=1.6e+02 Score=28.08 Aligned_cols=42 Identities=5% Similarity=0.009 Sum_probs=21.8
Q ss_pred ecEEEEeEEEeCCCC----CEEEEecc-ccCcEEeEEEEeeEEEcCC
Q 038535 101 SNIAVRRVSGTTPTC----SGVGIGRE-MSGRIFNVTVNHLDVWMQQ 142 (225)
Q Consensus 101 ~nV~v~nc~~~~~~~----~gi~iGs~-~~~~v~ni~~~n~~~~~~~ 142 (225)
-..+++||.+..... .-|.-.+. ....-.-+.|.||++....
T Consensus 382 a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 382 SAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred ceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 346777777764311 12222221 1223356788888887643
No 77
>PLN02671 pectinesterase
Probab=56.90 E-value=1.5e+02 Score=26.72 Aligned_cols=40 Identities=0% Similarity=-0.139 Sum_probs=19.9
Q ss_pred cEEEEeEEEeCCC--CCEEEEecc-ccCcEEeEEEEeeEEEcC
Q 038535 102 NIAVRRVSGTTPT--CSGVGIGRE-MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 102 nV~v~nc~~~~~~--~~gi~iGs~-~~~~v~ni~~~n~~~~~~ 141 (225)
...+++|.+.+.. ...|.-.+. ....-.-..|.||++...
T Consensus 228 ~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 270 (359)
T PLN02671 228 KSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNCVINGT 270 (359)
T ss_pred eEEEeccEEEEecCCCeEEEeeccCCCCCCccEEEEccEEccC
Confidence 4667777765420 122333221 112235677777777653
No 78
>PLN02304 probable pectinesterase
Probab=55.88 E-value=1.5e+02 Score=27.04 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=14.0
Q ss_pred eeeeecEEEEeEEEECCC
Q 038535 45 PVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 45 ~~~c~nV~v~~~~i~~~~ 62 (225)
....+++..+||+|.|..
T Consensus 158 ~v~a~~F~a~nITf~Nta 175 (379)
T PLN02304 158 QVFASNFIAKNISFMNVA 175 (379)
T ss_pred EEECCCeEEEeeEEEecC
Confidence 345688999999999863
No 79
>PLN02432 putative pectinesterase
Probab=55.78 E-value=1.4e+02 Score=26.07 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=10.5
Q ss_pred eeeecEEEEeEEEECC
Q 038535 46 VYCRNGFVKGMTVLSP 61 (225)
Q Consensus 46 ~~c~nV~v~~~~i~~~ 61 (225)
...+++.++||+|.|.
T Consensus 91 v~a~~f~a~nlt~~Nt 106 (293)
T PLN02432 91 VLASDFVGRFLTIQNT 106 (293)
T ss_pred EECCCeEEEeeEEEeC
Confidence 3456777777777764
No 80
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=55.56 E-value=1.1e+02 Score=29.55 Aligned_cols=74 Identities=9% Similarity=0.053 Sum_probs=39.5
Q ss_pred eeeeecEEEEeEEEECCCCCCCCceecc----------cceeeeCCceEEeecCCCCCCccCCCCeecEEEEeEEEeCCC
Q 038535 45 PVYCRNGFVKGMTVLSPLSAPNTDGLDP----------DCYIESGNGLVAVKSGWDHDGIAMARPSSNIAVRRVSGTTPT 114 (225)
Q Consensus 45 ~~~c~nV~v~~~~i~~~~~~~ntDGid~----------~c~i~~gDD~i~iks~~~~~g~~~~~~~~nV~v~nc~~~~~~ 114 (225)
....+++..+|++|.|.......-.+-+ +|.|....|-+-..++ .-.++||++.+..
T Consensus 368 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~-------------Rqyy~~C~I~GtV 434 (596)
T PLN02745 368 VALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTH-------------RQFYRSCVITGTI 434 (596)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCCC-------------cEEEEeeEEEeec
Confidence 3466788889999998532111111111 6666665555443332 2466677666541
Q ss_pred CCEEEEeccccCcEEeEEEEeeEEE
Q 038535 115 CSGVGIGREMSGRIFNVTVNHLDVW 139 (225)
Q Consensus 115 ~~gi~iGs~~~~~v~ni~~~n~~~~ 139 (225)
+ +=+|. -...|+||.+.
T Consensus 435 -D-FIFG~------a~avf~~C~i~ 451 (596)
T PLN02745 435 -D-FIFGD------AAAIFQNCLIF 451 (596)
T ss_pred -c-EEecc------eeEEEEecEEE
Confidence 2 33443 34566666664
No 81
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=55.50 E-value=34 Score=28.51 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=25.6
Q ss_pred ecEEEEeEEEECCCCCCCCceecc--cceeee------CCceEEeecC
Q 038535 49 RNGFVKGMTVLSPLSAPNTDGLDP--DCYIES------GNGLVAVKSG 88 (225)
Q Consensus 49 ~nV~v~~~~i~~~~~~~ntDGid~--~c~i~~------gDD~i~iks~ 88 (225)
+..+++|+.|-.+ ..|||+. +|+|.+ +.|++++|+.
T Consensus 61 ~GatlkNvIiG~~----~~dGIHC~G~Ctl~NVwwedVcEDA~T~kg~ 104 (215)
T PF03211_consen 61 DGATLKNVIIGAN----QADGIHCKGSCTLENVWWEDVCEDAATFKGD 104 (215)
T ss_dssp TTEEEEEEEETSS-----TT-EEEESCEEEEEEEESS-SSESEEEESS
T ss_pred CCCEEEEEEEcCC----CcCceEEcCCEEEEEEEecccceeeeEEcCC
Confidence 5888889888543 3589988 676654 7888888874
No 82
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=55.30 E-value=1.4e+02 Score=28.25 Aligned_cols=16 Identities=6% Similarity=-0.232 Sum_probs=11.4
Q ss_pred eeecEEEEeEEEECCC
Q 038535 47 YCRNGFVKGMTVLSPL 62 (225)
Q Consensus 47 ~c~nV~v~~~~i~~~~ 62 (225)
..+++..+|++|.|..
T Consensus 282 ~g~gF~A~nitf~Nta 297 (509)
T PLN02488 282 NGDGFIGIDMCFRNTA 297 (509)
T ss_pred EcCCeEEEeeEEEECC
Confidence 4567777888888753
No 83
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=55.22 E-value=89 Score=29.95 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=10.5
Q ss_pred eeeecEEEEeEEEECC
Q 038535 46 VYCRNGFVKGMTVLSP 61 (225)
Q Consensus 46 ~~c~nV~v~~~~i~~~ 61 (225)
...+++..+|++|.|.
T Consensus 342 v~~~~f~a~~itf~Nt 357 (565)
T PLN02468 342 VFGKGFMARDMGFRNT 357 (565)
T ss_pred EECCCeEEEEEEEEeC
Confidence 3456677777777765
No 84
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=54.85 E-value=19 Score=17.95 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=14.0
Q ss_pred ecEEEEeEEEeCCCCCEEEEec
Q 038535 101 SNIAVRRVSGTTPTCSGVGIGR 122 (225)
Q Consensus 101 ~nV~v~nc~~~~~~~~gi~iGs 122 (225)
.+++|++|++......|+.+..
T Consensus 2 ~~~~i~~n~i~~~~~~Gi~i~~ 23 (26)
T smart00710 2 SNVTIENNTIRNNGGDGIYIGG 23 (26)
T ss_pred CCEEEECCEEEeCCCCcEEEec
Confidence 4677888877755334766643
No 85
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=54.74 E-value=2e+02 Score=27.57 Aligned_cols=106 Identities=7% Similarity=0.056 Sum_probs=65.4
Q ss_pred EEeecCeeEEeceEEeCCCC----ceEEe-eeeecEEEEeEEEECCCCCCCCc-eecc--cceeeeCCceEEeecCCCCC
Q 038535 21 LMNSSNILIISNLTFCNSPS----RTIHP-VYCRNGFVKGMTVLSPLSAPNTD-GLDP--DCYIESGNGLVAVKSGWDHD 92 (225)
Q Consensus 21 ~~~~~nv~~i~gv~l~n~~~----w~i~~-~~c~nV~v~~~~i~~~~~~~ntD-Gid~--~c~i~~gDD~i~iks~~~~~ 92 (225)
....+++. .++++|+|... ..+.+ ...+...+.+|.+.+..+-.-.+ |-.. +|+|.-.=|=| -|
T Consensus 341 ~v~~~~f~-a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFI---FG---- 412 (565)
T PLN02468 341 AVFGKGFM-ARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFI---FG---- 412 (565)
T ss_pred eEECCCeE-EEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEeccccee---ec----
Confidence 34578999 99999999754 23333 36889999999999865311111 1122 88886433322 22
Q ss_pred CccCCCCeecEEEEeEEEeCCC-----CCEEEEecc-ccCcEEeEEEEeeEEEcC
Q 038535 93 GIAMARPSSNIAVRRVSGTTPT-----CSGVGIGRE-MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 93 g~~~~~~~~nV~v~nc~~~~~~-----~~gi~iGs~-~~~~v~ni~~~n~~~~~~ 141 (225)
.-.++++||.+.... ...|.-.+. ....-.-+.|.||++...
T Consensus 413 -------~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 460 (565)
T PLN02468 413 -------NSAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPL 460 (565)
T ss_pred -------cceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecC
Confidence 246889999886431 133444322 223446789999999864
No 86
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=54.52 E-value=1.6e+02 Score=27.22 Aligned_cols=19 Identities=11% Similarity=-0.025 Sum_probs=15.1
Q ss_pred EeeeeecEEEEeEEEECCC
Q 038535 44 HPVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 44 ~~~~c~nV~v~~~~i~~~~ 62 (225)
.....+++.++||+|.|..
T Consensus 201 v~v~ad~F~a~NLTf~Nta 219 (422)
T PRK10531 201 FWSQNNGLQLQNLTIENTL 219 (422)
T ss_pred EEEECCCEEEEeeEEEeCC
Confidence 3446689999999999964
No 87
>PLN02197 pectinesterase
Probab=54.50 E-value=1.1e+02 Score=29.58 Aligned_cols=17 Identities=12% Similarity=-0.046 Sum_probs=10.9
Q ss_pred eeeeecEEEEeEEEECC
Q 038535 45 PVYCRNGFVKGMTVLSP 61 (225)
Q Consensus 45 ~~~c~nV~v~~~~i~~~ 61 (225)
....+++..+|++|.|.
T Consensus 360 ~v~~~~F~a~nitf~Nt 376 (588)
T PLN02197 360 QVESEGFMAKWIGFKNT 376 (588)
T ss_pred EEECCcEEEEEeEEEeC
Confidence 33456677777777764
No 88
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=54.28 E-value=96 Score=29.58 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=14.3
Q ss_pred EeeeeecEEEEeEEEECCC
Q 038535 44 HPVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 44 ~~~~c~nV~v~~~~i~~~~ 62 (225)
.....+++..+|++|.|..
T Consensus 312 ~~v~~~~F~a~nitf~Nta 330 (541)
T PLN02416 312 LAVSGEGFLARDITIENTA 330 (541)
T ss_pred EEEECCCeEEEeeEEEECC
Confidence 3445788899999999864
No 89
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=54.18 E-value=2e+02 Score=27.33 Aligned_cols=106 Identities=7% Similarity=0.067 Sum_probs=65.7
Q ss_pred EEeecCeeEEeceEEeCCCC----ceEEee-eeecEEEEeEEEECCCCCCCC-ceecc--cceeeeCCceEEeecCCCCC
Q 038535 21 LMNSSNILIISNLTFCNSPS----RTIHPV-YCRNGFVKGMTVLSPLSAPNT-DGLDP--DCYIESGNGLVAVKSGWDHD 92 (225)
Q Consensus 21 ~~~~~nv~~i~gv~l~n~~~----w~i~~~-~c~nV~v~~~~i~~~~~~~nt-DGid~--~c~i~~gDD~i~iks~~~~~ 92 (225)
....+++. .++++|+|... ..+.+. ..+...+.+|.+.+..+-.-. -|-.. +|+|.-.=|=| + |
T Consensus 289 ~v~~~~F~-a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFI-F--G---- 360 (520)
T PLN02201 289 AVSGRGFI-ARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECRITGTVDFI-F--G---- 360 (520)
T ss_pred EEECCCeE-EEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeEEeecccEE-e--c----
Confidence 45589999 99999999853 333333 478999999999986431100 11122 88887543332 2 2
Q ss_pred CccCCCCeecEEEEeEEEeCCC-----CCEEEEecc-ccCcEEeEEEEeeEEEcC
Q 038535 93 GIAMARPSSNIAVRRVSGTTPT-----CSGVGIGRE-MSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 93 g~~~~~~~~nV~v~nc~~~~~~-----~~gi~iGs~-~~~~v~ni~~~n~~~~~~ 141 (225)
.-..+++||.+.... .+.|.-.+. ....-.-+.|.||++...
T Consensus 361 -------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 361 -------DATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred -------CceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 235899999887531 134444332 223346789999999763
No 90
>PLN02671 pectinesterase
Probab=54.05 E-value=1.4e+02 Score=26.96 Aligned_cols=18 Identities=11% Similarity=0.021 Sum_probs=13.9
Q ss_pred EeeeeecEEEEeEEEECC
Q 038535 44 HPVYCRNGFVKGMTVLSP 61 (225)
Q Consensus 44 ~~~~c~nV~v~~~~i~~~ 61 (225)
.....+++..+||+|.|.
T Consensus 149 v~v~a~~F~a~nitfeNt 166 (359)
T PLN02671 149 VTIESDYFCATGITFENT 166 (359)
T ss_pred EEEECCceEEEeeEEEcC
Confidence 344567888899999986
No 91
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=54.00 E-value=1e+02 Score=29.34 Aligned_cols=20 Identities=10% Similarity=-0.081 Sum_probs=13.9
Q ss_pred EEeeeeecEEEEeEEEECCC
Q 038535 43 IHPVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 43 i~~~~c~nV~v~~~~i~~~~ 62 (225)
......+++..+|++|.|..
T Consensus 307 T~~v~~~~F~a~~it~~Nta 326 (538)
T PLN03043 307 TFAVSGERFVAVDVTFRNTA 326 (538)
T ss_pred EEEEECCCEEEEeeEEEECC
Confidence 33445678888888888853
No 92
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=53.07 E-value=1.1e+02 Score=29.22 Aligned_cols=17 Identities=0% Similarity=-0.126 Sum_probs=12.4
Q ss_pred eeeeecEEEEeEEEECC
Q 038535 45 PVYCRNGFVKGMTVLSP 61 (225)
Q Consensus 45 ~~~c~nV~v~~~~i~~~ 61 (225)
....+++..+|+++.|.
T Consensus 319 ~v~~~~F~a~nitf~Nt 335 (548)
T PLN02301 319 AAVGDGFIAQDIWFQNT 335 (548)
T ss_pred EEECCceEEEeeEEEEC
Confidence 34567788888888875
No 93
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=52.23 E-value=91 Score=30.56 Aligned_cols=17 Identities=6% Similarity=-0.019 Sum_probs=12.8
Q ss_pred eeeecEEEEeEEEECCC
Q 038535 46 VYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 46 ~~c~nV~v~~~~i~~~~ 62 (225)
...+++..+|++|.|..
T Consensus 334 v~g~~F~a~nitf~Nta 350 (670)
T PLN02217 334 IVGDHFIAKNIGFENTA 350 (670)
T ss_pred EECCCeEEEeeEEEeCC
Confidence 35678888888888864
No 94
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=52.14 E-value=1.8e+02 Score=27.89 Aligned_cols=106 Identities=8% Similarity=0.056 Sum_probs=64.4
Q ss_pred EEeecCeeEEeceEEeCCCC----ceEEe-eeeecEEEEeEEEECCCCCCCCc-eecc--cceeeeCCceEEeecCCCCC
Q 038535 21 LMNSSNILIISNLTFCNSPS----RTIHP-VYCRNGFVKGMTVLSPLSAPNTD-GLDP--DCYIESGNGLVAVKSGWDHD 92 (225)
Q Consensus 21 ~~~~~nv~~i~gv~l~n~~~----w~i~~-~~c~nV~v~~~~i~~~~~~~ntD-Gid~--~c~i~~gDD~i~iks~~~~~ 92 (225)
....+++. .++++|+|... ..+.+ ...+...+.+|.+.+..+-.-+. |-.. +|+|.-.=|=| + |
T Consensus 336 ~v~~~~F~-a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFI-F--G---- 407 (566)
T PLN02713 336 AVVGQNFV-AVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFI-F--G---- 407 (566)
T ss_pred EEECCCeE-EEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEeccccee-c--c----
Confidence 34579999 99999999643 23332 35788999999999864311101 1122 88886433322 2 2
Q ss_pred CccCCCCeecEEEEeEEEeCCC-----CCEEEEec-cccCcEEeEEEEeeEEEcC
Q 038535 93 GIAMARPSSNIAVRRVSGTTPT-----CSGVGIGR-EMSGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 93 g~~~~~~~~nV~v~nc~~~~~~-----~~gi~iGs-~~~~~v~ni~~~n~~~~~~ 141 (225)
.-.++++||.+.... .+.|.-.+ .....-..+.|.||++...
T Consensus 408 -------~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 408 -------NAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred -------cceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecC
Confidence 245889999886531 12343332 2223346789999999764
No 95
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=51.59 E-value=2.2e+02 Score=27.10 Aligned_cols=39 Identities=5% Similarity=-0.030 Sum_probs=20.7
Q ss_pred cEEEEeEEEeCCC-----CCEEEEecc-ccCcEEeEEEEeeEEEc
Q 038535 102 NIAVRRVSGTTPT-----CSGVGIGRE-MSGRIFNVTVNHLDVWM 140 (225)
Q Consensus 102 nV~v~nc~~~~~~-----~~gi~iGs~-~~~~v~ni~~~n~~~~~ 140 (225)
...++||.+.... ...|.-.+. ....-.-+.|.||.+..
T Consensus 375 ~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~ 419 (530)
T PLN02933 375 AVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILA 419 (530)
T ss_pred eEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEec
Confidence 4677777775431 123333322 12223567888888865
No 96
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=50.50 E-value=1.1e+02 Score=28.86 Aligned_cols=19 Identities=0% Similarity=-0.043 Sum_probs=14.4
Q ss_pred EeeeeecEEEEeEEEECCC
Q 038535 44 HPVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 44 ~~~~c~nV~v~~~~i~~~~ 62 (225)
.....+++..+|++|.|..
T Consensus 265 ~~v~~~~F~a~nitf~Nta 283 (497)
T PLN02698 265 FTITGDGFIARDIGFKNAA 283 (497)
T ss_pred EEEECCCeEEEeeEEEECC
Confidence 3445678999999999864
No 97
>PLN02665 pectinesterase family protein
Probab=50.32 E-value=2e+02 Score=26.07 Aligned_cols=20 Identities=5% Similarity=-0.105 Sum_probs=16.0
Q ss_pred EEeeeeecEEEEeEEEECCC
Q 038535 43 IHPVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 43 i~~~~c~nV~v~~~~i~~~~ 62 (225)
.....++++..+|++|.|..
T Consensus 148 Tv~v~a~~F~a~nitf~Nta 167 (366)
T PLN02665 148 TLIVESDYFMAANIIIKNSA 167 (366)
T ss_pred EEEEECCCeEEEeeEEEeCC
Confidence 44557899999999999963
No 98
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=50.28 E-value=1.2e+02 Score=29.08 Aligned_cols=16 Identities=6% Similarity=-0.157 Sum_probs=10.5
Q ss_pred eeecEEEEeEEEECCC
Q 038535 47 YCRNGFVKGMTVLSPL 62 (225)
Q Consensus 47 ~c~nV~v~~~~i~~~~ 62 (225)
..+++..+|++|.|..
T Consensus 345 ~~~~F~a~nitf~Nta 360 (572)
T PLN02990 345 NGDHFTAKNIGFENTA 360 (572)
T ss_pred EcCCEEEEeeEEEeCC
Confidence 4566777777777653
No 99
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=50.14 E-value=1.1e+02 Score=29.55 Aligned_cols=19 Identities=11% Similarity=-0.108 Sum_probs=14.1
Q ss_pred EeeeeecEEEEeEEEECCC
Q 038535 44 HPVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 44 ~~~~c~nV~v~~~~i~~~~ 62 (225)
.....+++..+|++|.|..
T Consensus 355 ~~v~~~~F~a~~itf~Nta 373 (587)
T PLN02484 355 FAATGAGFIARDMTFENWA 373 (587)
T ss_pred EEEEcCCEEEEeeEEEECC
Confidence 3445678888999998853
No 100
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=50.04 E-value=1.3e+02 Score=28.55 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=13.2
Q ss_pred eeeeecEEEEeEEEECCC
Q 038535 45 PVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 45 ~~~c~nV~v~~~~i~~~~ 62 (225)
....+++..+|++|.|..
T Consensus 301 ~v~a~~F~a~nitf~Nta 318 (530)
T PLN02933 301 GVKGKGFIAKDISFVNYA 318 (530)
T ss_pred EEECCCEEEEeeEEEECC
Confidence 345678888888888853
No 101
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=49.55 E-value=27 Score=30.66 Aligned_cols=15 Identities=13% Similarity=0.443 Sum_probs=11.7
Q ss_pred eecEEEEeEEEEecC
Q 038535 195 FEEICMKNVSLLVQA 209 (225)
Q Consensus 195 v~~i~~~Nv~i~~~~ 209 (225)
|.|+.++|+.+....
T Consensus 300 cdnfvidni~mvnsa 314 (464)
T PRK10123 300 CDNFVIDNIEMINSA 314 (464)
T ss_pred ccceEEecccccccc
Confidence 788888888887655
No 102
>PLN02197 pectinesterase
Probab=49.50 E-value=2.1e+02 Score=27.61 Aligned_cols=106 Identities=7% Similarity=0.032 Sum_probs=63.6
Q ss_pred EEeecCeeEEeceEEeCCCC----ceEEee-eeecEEEEeEEEECCCCCCC-Cceecc--cceeeeCCceEEeecCCCCC
Q 038535 21 LMNSSNILIISNLTFCNSPS----RTIHPV-YCRNGFVKGMTVLSPLSAPN-TDGLDP--DCYIESGNGLVAVKSGWDHD 92 (225)
Q Consensus 21 ~~~~~nv~~i~gv~l~n~~~----w~i~~~-~c~nV~v~~~~i~~~~~~~n-tDGid~--~c~i~~gDD~i~iks~~~~~ 92 (225)
....+++. .++++|+|... ..+.+. ..+...+.+|.+.+..+-.- .-|-.. +|+|.-.=|=| -|
T Consensus 360 ~v~~~~F~-a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFI---FG---- 431 (588)
T PLN02197 360 QVESEGFM-AKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFI---FG---- 431 (588)
T ss_pred EEECCcEE-EEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCCCEEEEeeEEEeccccc---cc----
Confidence 44589999 99999999743 333333 57899999999998643110 012222 88886443322 22
Q ss_pred CccCCCCeecEEEEeEEEeCCCC-----CEEEEeccc--cCcEEeEEEEeeEEEcC
Q 038535 93 GIAMARPSSNIAVRRVSGTTPTC-----SGVGIGREM--SGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 93 g~~~~~~~~nV~v~nc~~~~~~~-----~gi~iGs~~--~~~v~ni~~~n~~~~~~ 141 (225)
..-.+++||.+..... +-|.-.+.. ...-.-+.|.||++...
T Consensus 432 -------~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 432 -------KSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPD 480 (588)
T ss_pred -------ceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecC
Confidence 2348999998864311 112222211 12335689999999864
No 103
>PLN02314 pectinesterase
Probab=48.43 E-value=1.3e+02 Score=28.99 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=13.4
Q ss_pred eeeeecEEEEeEEEECCC
Q 038535 45 PVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 45 ~~~c~nV~v~~~~i~~~~ 62 (225)
....+++..+|++|.|..
T Consensus 361 ~v~~~~F~a~~itf~Nta 378 (586)
T PLN02314 361 AAAGKGFIAKDMGFINTA 378 (586)
T ss_pred EEEcCCeEEEeeEEEECC
Confidence 345678888888888853
No 104
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=48.29 E-value=2.5e+02 Score=26.65 Aligned_cols=105 Identities=7% Similarity=0.070 Sum_probs=64.3
Q ss_pred EeecCeeEEeceEEeCCCC----ceEEee-eeecEEEEeEEEECCCCCCCCc-eecc--cceeeeCCceEEeecCCCCCC
Q 038535 22 MNSSNILIISNLTFCNSPS----RTIHPV-YCRNGFVKGMTVLSPLSAPNTD-GLDP--DCYIESGNGLVAVKSGWDHDG 93 (225)
Q Consensus 22 ~~~~nv~~i~gv~l~n~~~----w~i~~~-~c~nV~v~~~~i~~~~~~~ntD-Gid~--~c~i~~gDD~i~iks~~~~~g 93 (225)
...+++. .++++|+|... ..+.+. ..+...+.+|.+.+..+-.-.. |-.. +|+|.-.=|=| + |
T Consensus 281 v~g~gF~-A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFI-F--G----- 351 (509)
T PLN02488 281 SNGDGFI-GIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFI-C--G----- 351 (509)
T ss_pred EEcCCeE-EEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceE-e--c-----
Confidence 3578899 99999999753 333333 5789999999999864311111 1122 88886543333 2 2
Q ss_pred ccCCCCeecEEEEeEEEeCCC-----CCEEEEeccc-cCcEEeEEEEeeEEEcC
Q 038535 94 IAMARPSSNIAVRRVSGTTPT-----CSGVGIGREM-SGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 94 ~~~~~~~~nV~v~nc~~~~~~-----~~gi~iGs~~-~~~v~ni~~~n~~~~~~ 141 (225)
.-.++++||.+.... .+-|.-.+.. ...-.-+.|.||++...
T Consensus 352 ------~a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~ 399 (509)
T PLN02488 352 ------NAAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITAS 399 (509)
T ss_pred ------ceEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecC
Confidence 346899999887531 1223333321 22345789999999864
No 105
>PLN02432 putative pectinesterase
Probab=48.06 E-value=1.9e+02 Score=25.28 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=53.2
Q ss_pred EeecCeeEEeceEEeCCCC---ceEEe-eeeecEEEEeEEEECCCCCCC-Cceecc--cceeeeCCceEEeecCCCCCCc
Q 038535 22 MNSSNILIISNLTFCNSPS---RTIHP-VYCRNGFVKGMTVLSPLSAPN-TDGLDP--DCYIESGNGLVAVKSGWDHDGI 94 (225)
Q Consensus 22 ~~~~nv~~i~gv~l~n~~~---w~i~~-~~c~nV~v~~~~i~~~~~~~n-tDGid~--~c~i~~gDD~i~iks~~~~~g~ 94 (225)
..++++. .++|+|+|... ..+.+ ...+...+.+|.+.+..+-.- .-|-.. ||+|.-.=|=| ++.
T Consensus 91 v~a~~f~-a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~gr~yf~~c~I~G~VDFI-FG~------- 161 (293)
T PLN02432 91 VLASDFV-GRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLLDDTGRHYYRNCYIEGATDFI-CGN------- 161 (293)
T ss_pred EECCCeE-EEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeEECCCCEEEEeCEEEecccEE-ecC-------
Confidence 3467777 88888887632 22222 245777777777776433110 012222 77776433322 222
Q ss_pred cCCCCeecEEEEeEEEeCCC--CCEEEEecc-ccCcEEeEEEEeeEEEc
Q 038535 95 AMARPSSNIAVRRVSGTTPT--CSGVGIGRE-MSGRIFNVTVNHLDVWM 140 (225)
Q Consensus 95 ~~~~~~~nV~v~nc~~~~~~--~~gi~iGs~-~~~~v~ni~~~n~~~~~ 140 (225)
-...+++|.+.... ...|.-.+. ....-.-..|.||++..
T Consensus 162 ------g~a~Fe~c~i~s~~~~~g~itA~~r~~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 162 ------AASLFEKCHLHSLSPNNGAITAQQRTSASENTGFTFLGCKLTG 204 (293)
T ss_pred ------ceEEEEeeEEEEecCCCCeEEecCCCCCCCCceEEEEeeEEcc
Confidence 23777777775421 123333222 11223457778887764
No 106
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=47.30 E-value=1.4e+02 Score=28.78 Aligned_cols=16 Identities=6% Similarity=0.042 Sum_probs=10.2
Q ss_pred eeeecEEEEeEEEECC
Q 038535 46 VYCRNGFVKGMTVLSP 61 (225)
Q Consensus 46 ~~c~nV~v~~~~i~~~ 61 (225)
...+++..+|++|.|.
T Consensus 359 v~~~~F~a~~itf~Nt 374 (587)
T PLN02313 359 AVGERFLARDITFQNT 374 (587)
T ss_pred EECCCeEEEeeEEEeC
Confidence 3456667777777764
No 107
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=46.90 E-value=1.4e+02 Score=28.42 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=13.0
Q ss_pred eeeeecEEEEeEEEECCC
Q 038535 45 PVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 45 ~~~c~nV~v~~~~i~~~~ 62 (225)
....+++..+|++|.|..
T Consensus 308 ~v~~~~F~a~nitf~Nta 325 (539)
T PLN02995 308 GIEGLHFIAKGITFRNTA 325 (539)
T ss_pred EEECCCeEEEeeEEEeCC
Confidence 345678888888888853
No 108
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=45.64 E-value=2.9e+02 Score=26.64 Aligned_cols=106 Identities=7% Similarity=0.073 Sum_probs=63.9
Q ss_pred EeecCeeEEeceEEeCCCC----ceEEee-eeecEEEEeEEEECCCCCCCC-ceecc--cceeeeCCceEEeecCCCCCC
Q 038535 22 MNSSNILIISNLTFCNSPS----RTIHPV-YCRNGFVKGMTVLSPLSAPNT-DGLDP--DCYIESGNGLVAVKSGWDHDG 93 (225)
Q Consensus 22 ~~~~nv~~i~gv~l~n~~~----w~i~~~-~c~nV~v~~~~i~~~~~~~nt-DGid~--~c~i~~gDD~i~iks~~~~~g 93 (225)
...+++. .++++|+|... ..+.+. ..+...+.+|.+.+..+-.-. -|-.. +|+|.-.=|=| + |
T Consensus 344 v~~~~F~-a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFI-F--G----- 414 (572)
T PLN02990 344 INGDHFT-AKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFI-F--G----- 414 (572)
T ss_pred EEcCCEE-EEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceE-c--c-----
Confidence 3578999 99999999854 333333 578999999999985431111 11222 88886443322 2 2
Q ss_pred ccCCCCeecEEEEeEEEeCCCC-----CEEEEecc-ccCcEEeEEEEeeEEEcCC
Q 038535 94 IAMARPSSNIAVRRVSGTTPTC-----SGVGIGRE-MSGRIFNVTVNHLDVWMQQ 142 (225)
Q Consensus 94 ~~~~~~~~nV~v~nc~~~~~~~-----~gi~iGs~-~~~~v~ni~~~n~~~~~~~ 142 (225)
.-..+++||.+..... +-|.-.+. ....-.-+.|.||++....
T Consensus 415 ------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 415 ------DAKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred ------CceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 2358899998865311 12322221 2223467899999997753
No 109
>PLN02634 probable pectinesterase
Probab=44.25 E-value=2.1e+02 Score=25.79 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=13.7
Q ss_pred eeeeecEEEEeEEEECCC
Q 038535 45 PVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 45 ~~~c~nV~v~~~~i~~~~ 62 (225)
....+++..+||+|.|..
T Consensus 145 ~V~a~~F~a~niTf~Nta 162 (359)
T PLN02634 145 TVYANYFTARNISFKNTA 162 (359)
T ss_pred EEECCCeEEEeCeEEeCC
Confidence 345678899999999863
No 110
>PLN02497 probable pectinesterase
Probab=43.23 E-value=2.4e+02 Score=25.11 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=14.3
Q ss_pred eeeeecEEEEeEEEECCC
Q 038535 45 PVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 45 ~~~c~nV~v~~~~i~~~~ 62 (225)
....+++.++|++|.|..
T Consensus 111 ~v~a~~f~a~nlT~~Nt~ 128 (331)
T PLN02497 111 STLADNTVVKSITFANSY 128 (331)
T ss_pred EEecCCeEEEccEEEeCC
Confidence 346788999999999864
No 111
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=39.67 E-value=3.6e+02 Score=26.06 Aligned_cols=107 Identities=7% Similarity=0.043 Sum_probs=66.1
Q ss_pred EEeecCeeEEeceEEeCCCC----ceEEee-eeecEEEEeEEEECCCCCCCCc-eecc--cceeeeCCceEEeecCCCCC
Q 038535 21 LMNSSNILIISNLTFCNSPS----RTIHPV-YCRNGFVKGMTVLSPLSAPNTD-GLDP--DCYIESGNGLVAVKSGWDHD 92 (225)
Q Consensus 21 ~~~~~nv~~i~gv~l~n~~~----w~i~~~-~c~nV~v~~~~i~~~~~~~ntD-Gid~--~c~i~~gDD~i~iks~~~~~ 92 (225)
....+++. .++++|+|... ..+.+. ..+...+.+|.+.+..+-.-+. |-.. +|+|.-.=|=| + |
T Consensus 358 ~v~~~~F~-a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFI-F--G---- 429 (587)
T PLN02313 358 AAVGERFL-ARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFI-F--G---- 429 (587)
T ss_pred EEECCCeE-EEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeecccee-c--c----
Confidence 34578999 99999999854 233333 5789999999999864311111 1112 88886543333 2 2
Q ss_pred CccCCCCeecEEEEeEEEeCCC-----CCEEEEecc-ccCcEEeEEEEeeEEEcCC
Q 038535 93 GIAMARPSSNIAVRRVSGTTPT-----CSGVGIGRE-MSGRIFNVTVNHLDVWMQQ 142 (225)
Q Consensus 93 g~~~~~~~~nV~v~nc~~~~~~-----~~gi~iGs~-~~~~v~ni~~~n~~~~~~~ 142 (225)
.-.++++||.+.... .+.|.-.+. ....-.-+.|.||++..+.
T Consensus 430 -------~a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 430 -------NAAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred -------ceeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecCC
Confidence 346899999887431 123444322 2334568999999997643
No 112
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=37.61 E-value=2.6e+02 Score=23.81 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=28.7
Q ss_pred cEEEEeEEEeCCCCCEEEEecc-ccCcEEeEEEEeeEEEcCCCC
Q 038535 102 NIAVRRVSGTTPTCSGVGIGRE-MSGRIFNVTVNHLDVWMQQQG 144 (225)
Q Consensus 102 nV~v~nc~~~~~~~~gi~iGs~-~~~~v~ni~~~n~~~~~~~~G 144 (225)
+.+|+||+|......|+.+-.. ....+.++.|+.-.+.....|
T Consensus 123 ~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~G 166 (246)
T PF07602_consen 123 SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTG 166 (246)
T ss_pred CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcC
Confidence 7788888887543678776322 245677888887777765554
No 113
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=32.44 E-value=4.1e+02 Score=24.60 Aligned_cols=124 Identities=19% Similarity=0.168 Sum_probs=55.4
Q ss_pred CCceeEEEEeecCeeEEeceEEeCCCCceEEeeeeecEEEEeEEEECCCCCCCCceecc--------cceeee-----CC
Q 038535 14 TRGHLVELMNSSNILIISNLTFCNSPSRTIHPVYCRNGFVKGMTVLSPLSAPNTDGLDP--------DCYIES-----GN 80 (225)
Q Consensus 14 ~rp~~i~~~~~~nv~~i~gv~l~n~~~w~i~~~~c~nV~v~~~~i~~~~~~~ntDGid~--------~c~i~~-----gD 80 (225)
.-+.+|....+.|+ |++=+|+++.. ++.+.+-.+-+|++=.+.......+|-||.+ |.+|.. -.
T Consensus 213 GE~EIISvKS~~N~--ir~Ntf~es~G-~ltlRHGn~n~V~gN~FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~ 289 (425)
T PF14592_consen 213 GEVEIISVKSSDNT--IRNNTFRESQG-SLTLRHGNRNTVEGNVFIGNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFR 289 (425)
T ss_dssp SSSEEEEEESBT-E--EES-EEES-SS-EEEEEE-SS-EEES-EEEE-SSSS-B--EEE-SBS-EEES-EEEESSB-TTT
T ss_pred CceeEEEeecCCce--EeccEEEeccc-eEEEecCCCceEeccEEecCCCcCCCCceEEecCCcEEEcceeeccccceee
Confidence 44667777766554 56667776665 4666666666676666665422346778888 222221 12
Q ss_pred ceEEeecC-CCCCCccCCCCeecEEEEeEEEeCCCCCEEEEecc--------------ccCcEEeEEEEeeEEEcCC
Q 038535 81 GLVAVKSG-WDHDGIAMARPSSNIAVRRVSGTTPTCSGVGIGRE--------------MSGRIFNVTVNHLDVWMQQ 142 (225)
Q Consensus 81 D~i~iks~-~~~~g~~~~~~~~nV~v~nc~~~~~~~~gi~iGs~--------------~~~~v~ni~~~n~~~~~~~ 142 (225)
-++++-.+ +.+..-+ -..++|++|.+.++-.. ..+|.+|.. ....-.+++|.|-.+.+..
T Consensus 290 ~~~~v~ng~p~s~ln~-y~qv~nv~I~~NT~In~-~~~i~~g~g~~~~~~~~~~~~~i~s~~p~~~~~~nN~i~~~~ 364 (425)
T PF14592_consen 290 GALAVMNGVPNSPLNR-YDQVKNVLIANNTFINC-KSPIHFGAGSDEERKDVLPASNIRSARPINSTFANNIIYNDD 364 (425)
T ss_dssp TSEE-EEE--BSTTST-T---BSEEEES-EEES--SEEEESST-THHHHHHHHHHCT---B---SEEEES-EEE--S
T ss_pred cceeeccCCCCCCccc-ccccceeEEecceEEcc-CCceEEccccccccccccccccccccCCceEEeeCCeEEcCC
Confidence 23332111 1111001 12478888888887755 467888773 1234567777777776544
No 114
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=29.74 E-value=5e+02 Score=24.78 Aligned_cols=20 Identities=5% Similarity=0.026 Sum_probs=14.6
Q ss_pred EEeeeeecEEEEeEEEECCC
Q 038535 43 IHPVYCRNGFVKGMTVLSPL 62 (225)
Q Consensus 43 i~~~~c~nV~v~~~~i~~~~ 62 (225)
......+++..+|++|.|..
T Consensus 307 Tv~v~~~~F~a~nitf~Nta 326 (529)
T PLN02170 307 TVAAMGDGFIARDITFVNSA 326 (529)
T ss_pred EEEEEcCCeEEEeeEEEecC
Confidence 34456678888999998863
No 115
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=28.42 E-value=79 Score=26.98 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=10.4
Q ss_pred cCcEEeEEEEeeEEEcC
Q 038535 125 SGRIFNVTVNHLDVWMQ 141 (225)
Q Consensus 125 ~~~v~ni~~~n~~~~~~ 141 (225)
++.|+|+.++|+.+...
T Consensus 211 gatI~nL~l~nv~I~~~ 227 (250)
T PF05342_consen 211 GATIKNLNLKNVNINGP 227 (250)
T ss_pred CCEEEcceeEEeeeecc
Confidence 45566666666666554
No 116
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=22.87 E-value=3.4e+02 Score=24.76 Aligned_cols=11 Identities=0% Similarity=-0.188 Sum_probs=5.3
Q ss_pred cEEEEeEEEEC
Q 038535 50 NGFVKGMTVLS 60 (225)
Q Consensus 50 nV~v~~~~i~~ 60 (225)
+|++.|+.+..
T Consensus 122 ~VtF~ni~F~~ 132 (386)
T PF01696_consen 122 GVTFVNIRFEG 132 (386)
T ss_pred eeEEEEEEEec
Confidence 44444554444
Done!