Query 038536
Match_columns 221
No_of_seqs 127 out of 1307
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 12:05:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 5.4E-29 1.2E-33 223.5 24.7 161 44-208 261-453 (455)
2 PRK10189 MATE family multidrug 100.0 2.1E-28 4.5E-33 221.0 22.7 155 46-203 281-467 (478)
3 PRK00187 multidrug efflux prot 100.0 1.1E-27 2.3E-32 215.7 25.2 164 44-213 256-456 (464)
4 PRK01766 multidrug efflux prot 99.9 2.5E-25 5.3E-30 199.5 25.1 156 44-202 259-446 (456)
5 KOG1347 Uncharacterized membra 99.9 7.9E-27 1.7E-31 209.5 10.4 213 1-215 129-469 (473)
6 PRK09575 vmrA multidrug efflux 99.9 1.2E-22 2.5E-27 182.5 23.8 195 1-201 114-438 (453)
7 PRK10367 DNA-damage-inducible 99.9 3.1E-22 6.7E-27 179.2 24.4 148 44-203 252-435 (441)
8 PRK10367 DNA-damage-inducible 99.9 1.5E-20 3.2E-25 168.4 22.3 174 16-197 6-211 (441)
9 COG0534 NorM Na+-driven multid 99.9 5.1E-20 1.1E-24 165.5 21.8 177 15-200 13-223 (455)
10 PRK00187 multidrug efflux prot 99.8 2.5E-19 5.5E-24 161.4 22.3 172 18-198 9-215 (464)
11 PRK10189 MATE family multidrug 99.8 5.7E-19 1.2E-23 159.7 22.6 170 18-196 28-235 (478)
12 PRK09575 vmrA multidrug efflux 99.8 2E-19 4.4E-24 161.5 17.9 173 17-198 10-215 (453)
13 PRK01766 multidrug efflux prot 99.8 1.3E-17 2.9E-22 149.6 23.5 183 9-200 2-220 (456)
14 TIGR01695 mviN integral membra 99.6 4.9E-14 1.1E-18 127.5 22.0 149 44-198 243-428 (502)
15 TIGR00797 matE putative efflux 99.6 1.4E-14 3.1E-19 124.6 17.2 150 44-197 13-196 (342)
16 PF01554 MatE: MatE; InterPro 99.6 3.5E-16 7.6E-21 120.9 3.4 125 37-163 6-162 (162)
17 TIGR02900 spore_V_B stage V sp 99.2 3E-09 6.5E-14 95.9 22.4 130 66-197 276-433 (488)
18 PF03023 MVIN: MviN-like prote 99.2 1.8E-08 3.9E-13 90.8 23.4 149 44-198 218-403 (451)
19 PRK15099 O-antigen translocase 98.9 4.9E-07 1.1E-11 80.3 20.8 144 46-196 237-410 (416)
20 TIGR02900 spore_V_B stage V sp 98.9 1E-07 2.2E-12 85.9 16.3 151 46-200 21-206 (488)
21 KOG1347 Uncharacterized membra 98.8 2.2E-07 4.7E-12 84.2 16.8 176 15-199 24-231 (473)
22 TIGR01695 mviN integral membra 98.8 8.2E-08 1.8E-12 86.9 13.7 146 46-198 22-207 (502)
23 PRK15099 O-antigen translocase 98.6 1E-06 2.2E-11 78.3 14.8 148 44-197 22-196 (416)
24 TIGR00797 matE putative efflux 98.5 3.3E-06 7.2E-11 72.6 14.5 60 44-105 236-297 (342)
25 COG0728 MviN Uncharacterized m 98.4 8.5E-05 1.8E-09 67.8 20.8 149 44-198 252-437 (518)
26 PRK10459 colanic acid exporter 98.3 0.00036 7.9E-09 63.2 21.4 143 47-195 230-402 (492)
27 PF03023 MVIN: MviN-like prote 98.0 0.00015 3.3E-09 65.4 14.3 145 51-200 2-184 (451)
28 COG2244 RfbX Membrane protein 97.9 0.00084 1.8E-08 60.5 17.3 155 16-180 210-394 (480)
29 PF14667 Polysacc_synt_C: Poly 97.7 0.00048 1E-08 51.9 9.6 79 116-198 2-80 (146)
30 PF01943 Polysacc_synt: Polysa 96.6 0.16 3.6E-06 41.4 14.9 149 44-198 20-191 (273)
31 PF07260 ANKH: Progressive ank 96.3 0.64 1.4E-05 40.1 18.5 98 46-144 33-160 (345)
32 PF13440 Polysacc_synt_3: Poly 96.0 0.68 1.5E-05 37.4 17.7 143 46-196 7-171 (251)
33 COG0728 MviN Uncharacterized m 95.5 1.7 3.6E-05 40.2 17.0 149 47-198 31-216 (518)
34 PRK10459 colanic acid exporter 94.7 2.3 5E-05 38.4 15.7 139 47-193 29-189 (492)
35 COG2244 RfbX Membrane protein 90.5 3.2 7E-05 37.3 10.5 107 44-152 27-156 (480)
36 PF04506 Rft-1: Rft protein; 80.5 18 0.00038 33.9 10.0 84 113-198 385-470 (549)
37 PF07074 TRAP-gamma: Transloco 74.8 12 0.00025 29.3 5.9 58 152-211 25-82 (170)
38 COG5393 Predicted membrane pro 74.5 19 0.00042 26.4 6.5 56 163-220 73-128 (131)
39 PF01554 MatE: MatE; InterPro 73.5 1.2 2.6E-05 33.5 0.3 31 2-32 95-125 (162)
40 KOG2864 Nuclear division RFT1 67.5 1E+02 0.0022 28.3 11.2 135 60-197 276-448 (530)
41 PF06305 DUF1049: Protein of u 59.2 22 0.00048 22.8 4.2 18 200-217 46-63 (68)
42 PF01943 Polysacc_synt: Polysa 56.2 1E+02 0.0022 24.6 9.1 45 46-91 227-271 (273)
43 COG4792 EscU Type III secretor 48.1 1.7E+02 0.0037 25.3 8.5 32 97-128 126-157 (349)
44 PRK09546 zntB zinc transporter 47.6 58 0.0012 28.0 6.0 50 147-200 266-323 (324)
45 PRK11085 magnesium/nickel/coba 45.8 1.8E+02 0.0038 25.2 8.6 25 174-200 291-315 (316)
46 TIGR00383 corA magnesium Mg(2+ 42.7 83 0.0018 26.7 6.2 50 147-200 260-317 (318)
47 PRK14472 F0F1 ATP synthase sub 39.5 51 0.0011 25.6 4.1 43 169-212 10-52 (175)
48 PRK11677 hypothetical protein; 35.4 78 0.0017 23.8 4.3 40 176-216 3-50 (134)
49 COG0598 CorA Mg2+ and Co2+ tra 35.3 2.9E+02 0.0063 23.7 9.9 50 147-200 264-321 (322)
50 COG3771 Predicted membrane pro 31.1 92 0.002 21.6 3.7 35 180-214 53-88 (97)
51 PF14163 SieB: Superinfection 28.8 2.1E+02 0.0046 21.5 5.9 32 150-182 7-40 (151)
52 PRK06569 F0F1 ATP synthase sub 27.1 1.2E+02 0.0026 23.4 4.1 38 176-214 9-46 (155)
53 PRK13453 F0F1 ATP synthase sub 26.1 2.1E+02 0.0045 22.2 5.5 33 180-212 20-52 (173)
54 PF11085 YqhR: Conserved membr 26.1 2.4E+02 0.0053 22.1 5.7 52 138-191 62-113 (173)
55 PRK13460 F0F1 ATP synthase sub 26.0 1.3E+02 0.0028 23.3 4.3 41 170-211 9-49 (173)
56 PRK09174 F0F1 ATP synthase sub 25.6 1E+02 0.0022 24.8 3.8 36 176-212 52-87 (204)
57 KOG3098 Uncharacterized conser 23.5 3.7E+02 0.008 24.7 7.3 33 172-204 412-444 (461)
58 PF05745 CRPA: Chlamydia 15 kD 22.6 3.4E+02 0.0073 20.4 6.2 58 160-218 80-137 (150)
59 PF13440 Polysacc_synt_3: Poly 22.1 3.9E+02 0.0085 20.9 9.2 44 46-91 205-250 (251)
60 PRK00523 hypothetical protein; 20.3 1.9E+02 0.0041 19.3 3.5 31 173-204 4-34 (72)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.97 E-value=5.4e-29 Score=223.52 Aligned_cols=161 Identities=27% Similarity=0.397 Sum_probs=153.5
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH----------------
Q 038536 44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV---------------- 105 (221)
Q Consensus 44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~---------------- 105 (221)
+...+.+.+++| ++++|||+++.++.++.++++.|+++|+++++|| ||||+||+|+..+.
T Consensus 261 ~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~ 338 (455)
T COG0534 261 FLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLL 338 (455)
T ss_pred HHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999 6789999999999999999999999999999999 99999999999988
Q ss_pred --------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCc
Q 038536 106 --------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSR 171 (221)
Q Consensus 106 --------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g 171 (221)
+|+.+.+.+++++..+.+++++.+.+..|.+||.||+|.+++++++++|++++|++|++.+.. +|
T Consensus 339 ~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g 417 (455)
T COG0534 339 LLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LG 417 (455)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-cc
Confidence 999999999999999999999999999999999999999999999999999999999999866 99
Q ss_pred cchhhhhhHHhHHHHHHHHHHHHHhhcChHHHHHHHH
Q 038536 172 GPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLS 208 (221)
Q Consensus 172 ~~Giw~~~~~~~~~~~~i~~~~~~~~~~w~~~~~~~~ 208 (221)
..|+|++ +.+++.++++++.+++++.+|+++..+.+
T Consensus 418 ~~Gvw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (455)
T COG0534 418 LAGVWIG-FPLSLILRAILLLLRLRRGRWRRKAVAAA 453 (455)
T ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Confidence 9999999 99999999999999999999998876543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.96 E-value=2.1e-28 Score=221.02 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=147.5
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH------------------
Q 038536 46 FLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV------------------ 105 (221)
Q Consensus 46 ~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~------------------ 105 (221)
+.+.+++++| +.++|||+++.+++.+.+++..|+++|+++++|| ||||+||+|+..+.
T Consensus 281 ~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 358 (478)
T PRK10189 281 LTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAP 358 (478)
T ss_pred HHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678899 6799999999999999999999999999999999 99999999999887
Q ss_pred ------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccc
Q 038536 106 ------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGP 173 (221)
Q Consensus 106 ------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~ 173 (221)
+|+++.+..++++.+..+++++.+++..+++||.||++.+++++++++|++++|++|++.+.+++|+.
T Consensus 359 ~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~ 438 (478)
T PRK10189 359 FAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVV 438 (478)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 89999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHhhcChHHH
Q 038536 174 GIWIGGIQAGALLQTILLSIITSPFNHYKK 203 (221)
Q Consensus 174 Giw~~~~~~~~~~~~i~~~~~~~~~~w~~~ 203 (221)
|+|++ ..+++.++++++++++++.+|+|+
T Consensus 439 Gvw~~-~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 439 GVWMG-MFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHcCccccC
Confidence 99999 999999999999999999999983
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.96 E-value=1.1e-27 Score=215.67 Aligned_cols=164 Identities=23% Similarity=0.336 Sum_probs=147.2
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH----------------
Q 038536 44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV---------------- 105 (221)
Q Consensus 44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~---------------- 105 (221)
+.+++.+++++| +.++||++++.++..+.++++.|++.|+++++|| |+||+||+|+..+.
T Consensus 256 ~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 333 (464)
T PRK00187 256 FTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGFGAVVMLLFAGLF 333 (464)
T ss_pred HHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999 5799999999999999999999999999999999 99999999999987
Q ss_pred ----------------H---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHH
Q 038536 106 ----------------K---EVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGF 166 (221)
Q Consensus 106 ----------------~---~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~ 166 (221)
+ |+.+.+..++++.+.+.++++++.++.+++||.||+|.+++++++++|++++|++|++.+
T Consensus 334 ~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~~~~ipl~~ll~~ 413 (464)
T PRK00187 334 WLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYWLVGAPLAWLLAF 413 (464)
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 678888999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccchhhhhhHHhHHHHHHHHHHHHHhhcChHHHHHHHHHHhhh
Q 038536 167 WLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSVAN 213 (221)
Q Consensus 167 ~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~w~~~~~~~~~r~~~ 213 (221)
.+++|+.|+|++ +.+++.+.++++..++ +|+|...+.+++.+|
T Consensus 414 ~~~~g~~Gvw~~-~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 456 (464)
T PRK00187 414 TLGWGAVGVWWG-LALGLACAAVALTLAF---EWKTARLLRKARASE 456 (464)
T ss_pred ccCCCceeeHHH-HHHHHHHHHHHHHHHH---HHHHHHhhhhhhHHH
Confidence 889999999999 9999999998887776 444444444444444
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.95 E-value=2.5e-25 Score=199.54 Aligned_cols=156 Identities=23% Similarity=0.314 Sum_probs=146.7
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH----------------
Q 038536 44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV---------------- 105 (221)
Q Consensus 44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~---------------- 105 (221)
+.+...+++++| +.++|+++++.++.++.++++.|++.+.++++|| |+||++++|+..+.
T Consensus 259 ~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (456)
T PRK01766 259 FAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLAVGLGMALLTAIFL 336 (456)
T ss_pred HHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677889999 5789999999999999999999999999999999 99999999999887
Q ss_pred --------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCc
Q 038536 106 --------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSR 171 (221)
Q Consensus 106 --------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g 171 (221)
||+.+.+..++++..+..++++++.+.++++||.||++.++++++++.|++++|+.|++.+..++|
T Consensus 337 ~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G 416 (456)
T PRK01766 337 VLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGLPLGYILALTDPMG 416 (456)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 889999999999999999999999999999999999999999999999999999999999888899
Q ss_pred cchhhhhhHHhHHHHHHHHHHHHHhhcChHH
Q 038536 172 GPGIWIGGIQAGALLQTILLSIITSPFNHYK 202 (221)
Q Consensus 172 ~~Giw~~~~~~~~~~~~i~~~~~~~~~~w~~ 202 (221)
+.|+|++ +.+++.+.++++++++++.+|+.
T Consensus 417 ~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 417 PFGFWIG-LIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred ceehHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 99999999999999998887664
No 5
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.94 E-value=7.9e-27 Score=209.53 Aligned_cols=213 Identities=38% Similarity=0.641 Sum_probs=202.1
Q ss_pred ChhhhhhcCCChHHHHHHHHHHHHHHhHHhHH------------------------------------------------
Q 038536 1 MGKILIFMGQYPQISEEAGEFSMWLVPASSVI------------------------------------------------ 32 (221)
Q Consensus 1 ~~~il~~~g~~~~~~~~a~~y~~~~~p~l~~~------------------------------------------------ 32 (221)
+++||..+||||++++.|+.|.++.+|+++.+
T Consensus 129 ~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Ga 208 (473)
T KOG1347|consen 129 SEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGA 208 (473)
T ss_pred cHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccc
Confidence 47999999999999999999999999999988
Q ss_pred ---------------------------------HHhhhhHHHHH---------------HHHHHHHHhcCCCchhHHHHH
Q 038536 33 ---------------------------------QLFNHLFDYFK---------------HNFLTILSGLLPNPKLETSVL 64 (221)
Q Consensus 33 ---------------------------------~~~~~~~~~l~---------------~~~~~~~~~~lg~~~~~~Aa~ 64 (221)
. +++|++++| ++++.+..|.++++..++++.
T Consensus 209 ala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~ 287 (473)
T KOG1347|consen 209 ALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQ 287 (473)
T ss_pred hHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 3 888999999 888999999999877899999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH------------------------------HHHHHHH
Q 038536 65 SVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV------------------------------KEVVDHG 112 (221)
Q Consensus 65 ~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~------------------------------~~v~~~~ 112 (221)
+++.++....++.+.|++.|++++++| |+||+++||...+. +|+.+..
T Consensus 288 sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~v 367 (473)
T KOG1347|consen 288 SICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLV 367 (473)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999999999999999 99999999988776 8999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHHHH
Q 038536 113 TTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLS 192 (221)
Q Consensus 113 ~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~~~ 192 (221)
.+..++.+...+.++.+.+.+|+.||.|+++...++++.+++++++|++.++++..++|..|+|+| +..+..+......
T Consensus 368 a~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G-~~~~~~~~~~~l~ 446 (473)
T KOG1347|consen 368 ADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFFTKFGVKGLWIG-ILLGFSVQTLVLA 446 (473)
T ss_pred HHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEEEecCceEEEee-hHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999888888888
Q ss_pred HHHhhcChHHHHHHHHHHhhhhh
Q 038536 193 IITSPFNHYKKVNVLSHSVANAT 215 (221)
Q Consensus 193 ~~~~~~~w~~~~~~~~~r~~~~~ 215 (221)
....++||+++.+++++|..+..
T Consensus 447 ~~~~~tdW~~~~~~a~~~~~~~~ 469 (473)
T KOG1347|consen 447 IVTARTDWKNQAEKAFARIIASL 469 (473)
T ss_pred HheeeccHHHHHHHHHHHHHhhc
Confidence 88899999999999999988543
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.91 E-value=1.2e-22 Score=182.45 Aligned_cols=195 Identities=11% Similarity=0.099 Sum_probs=166.4
Q ss_pred ChhhhhhcCCChHHHHHHHHHHHHHHhHHhHH------------------------------------------------
Q 038536 1 MGKILIFMGQYPQISEEAGEFSMWLVPASSVI------------------------------------------------ 32 (221)
Q Consensus 1 ~~~il~~~g~~~~~~~~a~~y~~~~~p~l~~~------------------------------------------------ 32 (221)
+++++..++.|+|+.+.+.+|+++..++.++.
T Consensus 114 ~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Ga 193 (453)
T PRK09575 114 ADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGA 193 (453)
T ss_pred HHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHH
Confidence 37899999999999999999999999999986
Q ss_pred ------------------------------H----HhhhhHHHHH---------------HHHHHHHHhcCCCchhHHHH
Q 038536 33 ------------------------------Q----LFNHLFDYFK---------------HNFLTILSGLLPNPKLETSV 63 (221)
Q Consensus 33 ------------------------------~----~~~~~~~~l~---------------~~~~~~~~~~lg~~~~~~Aa 63 (221)
+ .++.+++.+| +.+...+.+++|+ +.++|+
T Consensus 194 a~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~-~~~lAa 272 (453)
T PRK09575 194 AIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGS-ALTVGA 272 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCc-hHHHHH
Confidence 0 0112233344 3334455677784 357999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH-------------------------------HHHHH
Q 038536 64 LSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV-------------------------------KEVVD 110 (221)
Q Consensus 64 ~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~-------------------------------~~v~~ 110 (221)
++++.++..+.+++..|++.++++++|| ||||+||+|+..+. ||+++
T Consensus 273 ~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~ 352 (453)
T PRK09575 273 YAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIA 352 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHH
Confidence 9999999999999999999999999999 99999999999988 57999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHH
Q 038536 111 HGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTIL 190 (221)
Q Consensus 111 ~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~ 190 (221)
.+.+++++..+.+++++++.+..+.+||.||++.+++.++.+. ++.+|..|++.. .+|+.|+|++ +.+++.+..++
T Consensus 353 ~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~ll~~--~~G~~Gvw~a-~~~~~~~~~~~ 428 (453)
T PRK09575 353 ETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLFILPK--WLGVDGVWLA-MPLSNIALSLV 428 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHHHHHH--HHCcchHhhH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997764 678999998864 3799999999 99999999998
Q ss_pred HHHHHhhcChH
Q 038536 191 LSIITSPFNHY 201 (221)
Q Consensus 191 ~~~~~~~~~w~ 201 (221)
..+++++ +|+
T Consensus 429 ~~~~~~~-~~~ 438 (453)
T PRK09575 429 VAPMLWR-DVK 438 (453)
T ss_pred HHHHHHH-HHH
Confidence 8776654 344
No 7
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.91 E-value=3.1e-22 Score=179.23 Aligned_cols=148 Identities=15% Similarity=0.111 Sum_probs=123.2
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH----------------
Q 038536 44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV---------------- 105 (221)
Q Consensus 44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~---------------- 105 (221)
+.+.+.+++++| +.++|||+++.++.++.++++.|+++|+++++|| |+||+||+|+..+.
T Consensus 252 ~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 329 (441)
T PRK10367 252 FGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIVALLFSLVY 329 (441)
T ss_pred HHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666788899999 5789999999999999999999999999999999 99999999999887
Q ss_pred --------------HHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHh
Q 038536 106 --------------KEVVDHGTTMAPLVCLLVILESLKCV----LSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFW 167 (221)
Q Consensus 106 --------------~~v~~~~~~~l~i~~~~~~~~~~~~v----~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~ 167 (221)
+|+++.+.+++++.+...+......+ +.|.+||. |+|.+++++++++|++.++.
T Consensus 330 ~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~-dt~~~~~~~~~~~~~~~~~~------- 401 (441)
T PRK10367 330 ALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAA-EMRNSMAVAAAGFALTLLTL------- 401 (441)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchH-HHHHHHHHHHHHHHHHHHHH-------
Confidence 89999999999998765433324443 55555655 69999999999998533322
Q ss_pred hcCccchhhhhhHHhHHHHHHHHHHHHHhhcChHHH
Q 038536 168 LKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKK 203 (221)
Q Consensus 168 ~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~w~~~ 203 (221)
.++|+.|+|++ ..+++.++++++.+++++. |+|.
T Consensus 402 ~~~g~~Gvw~a-~~~~~~~~~i~~~~~~~~~-~~~~ 435 (441)
T PRK10367 402 PWLGNHGLWLA-LTVFLALRGLSLAAIWRRH-WRNG 435 (441)
T ss_pred HHcCchHHHHH-HHHHHHHHHHHHHHHHHHH-Hhcc
Confidence 24799999999 9999999999988776555 8653
No 8
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.87 E-value=1.5e-20 Score=168.38 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CC
Q 038536 16 EEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GA 93 (221)
Q Consensus 16 ~~a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga 93 (221)
+..++.++..+|.+..+ ..+..... +++.+++++|. +.++||.+++.++..+.+.+..|++.++++++|| |+
T Consensus 6 ~~~k~il~la~P~~~~~-~~~~~~~~----vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga 79 (441)
T PRK10367 6 SSDKALWRLALPMIFSN-ITVPLLGL----VDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGA 79 (441)
T ss_pred ccHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34677889999998887 55555555 77899999953 5689999999999999999999999999999999 99
Q ss_pred CCHHHHHHHHhH------------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 038536 94 GNSETAHIAVRV------------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQD 143 (221)
Q Consensus 94 ~~~~~a~~~~~~------------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~ 143 (221)
||+||+++..+. +|+.+.+.+|+++..++.++.....++++++||.||+|
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~ 159 (441)
T PRK10367 80 KNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYAR 159 (441)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 999999999877 89999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHHHHHHHhh
Q 038536 144 FGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSP 197 (221)
Q Consensus 144 ~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~ 197 (221)
.++++++++. ++++++.|++.+.+++|+.|+|++ +.+++.+..++..+++++
T Consensus 160 ~~~~~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~A-t~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 160 APVILLVVGN-ILNIVLDLWLVMGLHMNVQGAALA-TVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHcCCccHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999996 678999999998889999999999 999999998887766654
No 9
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.86 E-value=5.1e-20 Score=165.50 Aligned_cols=177 Identities=21% Similarity=0.216 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--C
Q 038536 15 SEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--G 92 (221)
Q Consensus 15 ~~~a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--G 92 (221)
....+++.+..+|.+..+ ..+.+..+ +++.++|+++ ++++||.++++++..+.+.+..|++.|++++++| |
T Consensus 13 ~~~~k~l~~la~P~i~~~-l~~~l~~~----vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~G 85 (455)
T COG0534 13 KKILKLLLKLAIPIILGN-LLQTLYGL----VDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIG 85 (455)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 345788999999999997 55555555 7789999999 6899999999999999999999999999999999 9
Q ss_pred CCCHHHHHHHHhH------------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 038536 93 AGNSETAHIAVRV------------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQ 142 (221)
Q Consensus 93 a~~~~~a~~~~~~------------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~ 142 (221)
+||++++|+..+. +|+.+.+.+|+++..++.++..+..++.+++|+.||+
T Consensus 86 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~ 165 (455)
T COG0534 86 AGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDT 165 (455)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999887 6799999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHh-hc-CccchhhhhhHHhHHHHHHHHHHHHHhhcCh
Q 038536 143 DFGAYVYLAASYLCGIPVAAALGFW-LK-SRGPGIWIGGIQAGALLQTILLSIITSPFNH 200 (221)
Q Consensus 143 ~~~~~~~~~~~~~i~ip~~~~~~~~-~~-~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~w 200 (221)
|.++++++++. +.++.+.|++.+. ++ +|+.|.-++ +.+++.+..+++++++++.+.
T Consensus 166 ~~~m~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~A-T~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 166 KTPMYILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALA-TVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred chhHHHHHHHH-HHHHHhhHHHHHhccccccchhHHHH-HHHHHHHHHHHHHHHHHhcch
Confidence 99999999998 5689999999887 56 999999999 999999999999988887764
No 10
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.85 E-value=2.5e-19 Score=161.40 Aligned_cols=172 Identities=17% Similarity=0.010 Sum_probs=150.6
Q ss_pred HHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCC
Q 038536 18 AGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGN 95 (221)
Q Consensus 18 a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~ 95 (221)
.++.++..+|....+ ....+.. ..++.+++++| +.++||++++.++..+.+++..|++.|+++++|| |+||
T Consensus 9 ~k~il~~a~P~~~~~-~~~~~~~----~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~ 81 (464)
T PRK00187 9 LKAILRLAGPLIASQ-LAHMLMV----FTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGD 81 (464)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 567778888887775 3333333 37789999999 6789999999999999999999999999999999 9999
Q ss_pred HHHHHHHHhH-----------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHH
Q 038536 96 SETAHIAVRV-----------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGA 146 (221)
Q Consensus 96 ~~~a~~~~~~-----------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~ 146 (221)
+||+++..+. ||+.+.+.+|+++..++.++..+.+++++++||.||++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 82 IEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 9999999876 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHh----hcCccchhhhhhHHhHHHHHHHHHHHHHhhc
Q 038536 147 YVYLAASYLCGIPVAAALGFW----LKSRGPGIWIGGIQAGALLQTILLSIITSPF 198 (221)
Q Consensus 147 ~~~~~~~~~i~ip~~~~~~~~----~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~ 198 (221)
++++++.. +++|+.|++.+. +++|+.|++++ +.+++....+++.++++++
T Consensus 162 ~~~~~~~~-~ni~~~~~lIfg~~g~p~~Gv~Gaala-t~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 162 VISLAGAV-ANLLLNYALIEGWFGLPKLGLMGIGLV-TALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHHHHH-HHHHHHHHHHcCCCCCccccccchHHH-HHHHHHHHHHHHHHHHHhc
Confidence 99999874 589999988764 25899999999 9999888888777666544
No 11
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.84 E-value=5.7e-19 Score=159.69 Aligned_cols=170 Identities=16% Similarity=0.101 Sum_probs=148.3
Q ss_pred HHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCC
Q 038536 18 AGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGN 95 (221)
Q Consensus 18 a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~ 95 (221)
.++.++..+|....+ ....... .+++.+++++| ++++||+++++++..+.+.+..|+++++++++|| |+||
T Consensus 28 ~k~il~la~P~~~~~-~~~~~~~----~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~ 100 (478)
T PRK10189 28 WREITPLAVPIFIEN-LCVLLMG----VLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRD 100 (478)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 556677777777765 3333333 37789999999 6789999999999999999999999999999999 9999
Q ss_pred HHHHHHHHhH--------------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 038536 96 SETAHIAVRV--------------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQD 143 (221)
Q Consensus 96 ~~~a~~~~~~--------------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~ 143 (221)
+||+++..+. +|+.+.+.+|+++..++.++.++..++++++||.||++
T Consensus 101 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~ 180 (478)
T PRK10189 101 RRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTK 180 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 9999999876 68899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHh----hcCccchhhhhhHHhHHHHHHHHHHHHHh
Q 038536 144 FGAYVYLAASYLCGIPVAAALGFW----LKSRGPGIWIGGIQAGALLQTILLSIITS 196 (221)
Q Consensus 144 ~~~~~~~~~~~~i~ip~~~~~~~~----~~~g~~Giw~~~~~~~~~~~~i~~~~~~~ 196 (221)
.++++++++. ++++++.+++.+. +++|+.|+|++ +.+++.+..++..+++.
T Consensus 181 ~~~~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~A-t~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 181 IPLLINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLG-LTISRYIGAVAIIWVLM 235 (478)
T ss_pred HhHHHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999865 6788898888764 37999999999 99999999888766554
No 12
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.83 E-value=2e-19 Score=161.47 Aligned_cols=173 Identities=15% Similarity=0.116 Sum_probs=156.5
Q ss_pred HHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CC
Q 038536 17 EAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLL-PNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GA 93 (221)
Q Consensus 17 ~a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~l-g~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga 93 (221)
..+++++..+|.+..+ ....+... .++.+++++ | ++++|+++++.++..+...+..|++.++++++|| |+
T Consensus 10 ~~k~i~~l~~P~~~~~-l~~~l~~~----~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga 82 (453)
T PRK09575 10 IYRTFWRYTIPSIAAM-LVNGLYQI----VDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGE 82 (453)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4678899999999887 55555555 778999996 7 5789999999999999999999999999999999 99
Q ss_pred CCHHHHHHHHhH------------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcch
Q 038536 94 GNSETAHIAVRV------------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQD 143 (221)
Q Consensus 94 ~~~~~a~~~~~~------------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~ 143 (221)
||+||+++..+. +|+.+.+.+|+++..++.++.++....++++|+.||++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~ 162 (453)
T PRK09575 83 GDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPN 162 (453)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 999999999887 88999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHHHHHHHhhc
Q 038536 144 FGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPF 198 (221)
Q Consensus 144 ~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~ 198 (221)
.++..++.+. ++++++.+++.+.+++|+.|+|++ +.+++.+..++.++++++.
T Consensus 163 ~~~~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~A-t~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 163 LATGLMVIGA-LINIVLDYLFIGWLDWGLTGAAIA-TALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHHHHH-HHHHHhhHHHHHhCCchhHHHHHH-HHHHHHHHHHHHHHHHHCC
Confidence 9999999886 778999999998889999999999 9999999999887777654
No 13
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.81 E-value=1.3e-17 Score=149.55 Aligned_cols=183 Identities=16% Similarity=0.122 Sum_probs=159.7
Q ss_pred CCChHHHHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 038536 9 GQYPQISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNR 88 (221)
Q Consensus 9 g~~~~~~~~a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ 88 (221)
...++..+..++.++..+|..+.+ ....+... +++.+++++| +.++|+++++.++..+.+.+..|++.+.+++
T Consensus 2 ~~~~~~~~~~~~il~~~~P~~~~~-~~~~~~~~----~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~ 74 (456)
T PRK01766 2 KETQKYKSEARQLLALALPILLAQ-VAQTAMGF----VDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPI 74 (456)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778899999999999886 44444444 6778999999 5789999999999999999999999999999
Q ss_pred Hcc--CCCCHHHHHHHHhH------------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 038536 89 VSN--GAGNSETAHIAVRV------------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVA 136 (221)
Q Consensus 89 ig~--Ga~~~~~a~~~~~~------------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gil 136 (221)
+|| |+||+|++++..+. +|+.+.+.+|+.+..++.++..+..++++++
T Consensus 75 vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l 154 (456)
T PRK01766 75 VAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFI 154 (456)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999876 7888899999999999999999999999999
Q ss_pred hhcCcchhHHHHHHHHHHHhHHHHHHHHHHh----hcCccchhhhhhHHhHHHHHHHHHHHHHhhcCh
Q 038536 137 RGCGWQDFGAYVYLAASYLCGIPVAAALGFW----LKSRGPGIWIGGIQAGALLQTILLSIITSPFNH 200 (221)
Q Consensus 137 rg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~----~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~w 200 (221)
||.||++.+++.++++. ++++++.+++.+. +++|+.|+|++ +.+++++..++..+++++.+.
T Consensus 155 ~~~g~~~~~~~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~a-t~is~~~~~~~~~~~~~~~~~ 220 (456)
T PRK01766 155 DGLGKTKPTMVIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVA-TAIVYWVMFLAMLIYIKRARR 220 (456)
T ss_pred HHcCCChHHHHHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHH-HHHHHHHHHHHHHHHHHhChh
Confidence 99999999999999987 6789998888753 36899999999 999999999988877765543
No 14
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.64 E-value=4.9e-14 Score=127.50 Aligned_cols=149 Identities=17% Similarity=0.033 Sum_probs=126.3
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHcc--CCCCHHHHHHHHhH---------------
Q 038536 44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFT-IPDGLGTAASNRVSN--GAGNSETAHIAVRV--------------- 105 (221)
Q Consensus 44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~-~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~--------------- 105 (221)
..++..+.+.+| +.++++++.+.++..+... +..+++.+..|.+|+ |+||++++|+..+.
T Consensus 243 ~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (502)
T TIGR01695 243 LLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLTIPSSFG 320 (502)
T ss_pred HHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556667777 4578999999999988765 578999999999999 99999999988776
Q ss_pred -----H--------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHH
Q 038536 106 -----K--------------EVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGF 166 (221)
Q Consensus 106 -----~--------------~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~ 166 (221)
+ |..+.+..++.+.++..++.+++.+..+++++.||+|.++..++.+. ++.+|+.+++..
T Consensus 321 l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~l~~~l~~ 399 (502)
T TIGR01695 321 LLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNALLSLLLIF 399 (502)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHHHHHHHHH
Confidence 1 45556778889999999999999999999999999999999998886 578898888764
Q ss_pred hhcCccchhhhhhHHhHHHHHHHHHHHHHhhc
Q 038536 167 WLKSRGPGIWIGGIQAGALLQTILLSIITSPF 198 (221)
Q Consensus 167 ~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~ 198 (221)
.+|..|+|++ +.+++.+..++..+++++.
T Consensus 400 --~~G~~G~~~a-~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 400 --PLGLVGIALA-TSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred --HHhhhHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 5799999999 9999999999887777654
No 15
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.64 E-value=1.4e-14 Score=124.60 Aligned_cols=150 Identities=24% Similarity=0.220 Sum_probs=133.9
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH----------------
Q 038536 44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV---------------- 105 (221)
Q Consensus 44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~---------------- 105 (221)
..+++.+++++| +.++++++++.++..+...+..|++++.++.+++ |++|+|++++..+.
T Consensus 13 ~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (342)
T TIGR00797 13 GLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVG 90 (342)
T ss_pred HHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788999999 5689999999999999999999999999999999 99999999998877
Q ss_pred --------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHH-hhc-
Q 038536 106 --------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGF-WLK- 169 (221)
Q Consensus 106 --------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~-~~~- 169 (221)
++..+.+..++++.....++.+...++.+++|+.||++.+++.++++. ++.+++.+++.+ .++
T Consensus 91 ~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~~~~~li~~~~g~ 169 (342)
T TIGR00797 91 YFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINIILNYILIFGKFGF 169 (342)
T ss_pred HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHHHhHHHHhcCccc
Confidence 567777889999999999999999999999999999999999999887 567888887776 567
Q ss_pred CccchhhhhhHHhHHHHHHHHHHHHHhh
Q 038536 170 SRGPGIWIGGIQAGALLQTILLSIITSP 197 (221)
Q Consensus 170 ~g~~Giw~~~~~~~~~~~~i~~~~~~~~ 197 (221)
+|+.|++++ ..+++.+..++..+++++
T Consensus 170 ~g~~g~~~~-~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 170 LGIVGAALA-TVISYWLMFLLLLYYIKK 196 (342)
T ss_pred cccHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 889999999 999999999888777665
No 16
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.60 E-value=3.5e-16 Score=120.87 Aligned_cols=125 Identities=25% Similarity=0.353 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH---------
Q 038536 37 HLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV--------- 105 (221)
Q Consensus 37 ~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~--------- 105 (221)
.+-..+-+..++.+++++| ++++|+++++.++..+.+.+..|++.|.++++|| |++|+||+++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T PF01554_consen 6 QLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIG 83 (162)
T ss_dssp HHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeecccccccccccccccccccccchhcc
Confidence 3334444667889999998 5789999999999999999999999999999999 99999999999877
Q ss_pred ---------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHH
Q 038536 106 ---------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAA 163 (221)
Q Consensus 106 ---------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~ 163 (221)
+|+.+.+.+++++..+..++.++..+..+++||.||++.+++.++++.|++.+|++|+
T Consensus 84 ~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 84 LLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 8899999999999999999999999999999999999999999999999999999875
No 17
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.24 E-value=3e-09 Score=95.88 Aligned_cols=130 Identities=15% Similarity=0.077 Sum_probs=109.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH--------------------HHHHHH------HHhHHH
Q 038536 66 VCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV--------------------KEVVDH------GTTMAP 117 (221)
Q Consensus 66 i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~--------------------~~v~~~------~~~~l~ 117 (221)
++.++..+...+..+++.+..|.+++ |+||+|++|+..+. +++... +..++.
T Consensus 276 ~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~l~ 355 (488)
T TIGR02900 276 MAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPDAGNFIR 355 (488)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 44456666777788999999999999 99999999988766 444332 346788
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHHHHHHHhh
Q 038536 118 LVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSP 197 (221)
Q Consensus 118 i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~ 197 (221)
+.+...++++++.+.++++++.||+|.+++.++++. ++.+|+.+++...+++|..|+|++ +.+++.+..++..++.+|
T Consensus 356 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~i~l~~~l~~~~~~G~~Gaaia-~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 356 VLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-IVKIILLFVLTSIPSINIYGYAIT-FIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-HHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987 677888887764467899999999 999999999998887764
No 18
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.17 E-value=1.8e-08 Score=90.82 Aligned_cols=149 Identities=15% Similarity=0.081 Sum_probs=126.7
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH---------------
Q 038536 44 HNFLTILSGLLPNPKLETSVLSVCLATISNLF-TIPDGLGTAASNRVSN--GAGNSETAHIAVRV--------------- 105 (221)
Q Consensus 44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~-~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~--------------- 105 (221)
..+...+++.+++ -.+++..-+.++.++-. .+..++++..-|..++ -+||.++.++..+.
T Consensus 218 ~lv~~~laS~l~~--G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~ 295 (451)
T PF03023_consen 218 ILVDRALASFLGE--GSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIG 295 (451)
T ss_pred HHHHHHHHhCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446677788885 46899999999999865 5567899999999999 88999988888766
Q ss_pred -------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHH
Q 038536 106 -------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGF 166 (221)
Q Consensus 106 -------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~ 166 (221)
+|-.+...+.+.+++++.++.+++.++...+.+.||+|.++..++++. ++.+.+.+++..
T Consensus 296 ~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~ 374 (451)
T PF03023_consen 296 LIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVP 374 (451)
T ss_pred HHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHH
Confidence 666777789999999999999999999999999999999999999887 467777766654
Q ss_pred hhcCccchhhhhhHHhHHHHHHHHHHHHHhhc
Q 038536 167 WLKSRGPGIWIGGIQAGALLQTILLSIITSPF 198 (221)
Q Consensus 167 ~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~ 198 (221)
.+|..|+-++ ..++..+..++....++|.
T Consensus 375 --~~g~~Glala-~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 375 --FFGVAGLALA-TSLSAIISALLLYILLRRR 403 (451)
T ss_pred --HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 6899999999 9999999999988877654
No 19
>PRK15099 O-antigen translocase; Provisional
Probab=98.89 E-value=4.9e-07 Score=80.28 Aligned_cols=144 Identities=9% Similarity=-0.105 Sum_probs=105.6
Q ss_pred HHHHHH-hcCCCchhHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHccCCCCHHHHHHHHhH------------------
Q 038536 46 FLTILS-GLLPNPKLETSVLSVCLATIS-NLFTIPDGLGTAASNRVSNGAGNSETAHIAVRV------------------ 105 (221)
Q Consensus 46 ~~~~~~-~~lg~~~~~~Aa~~i~~~v~~-~~~~~~~gl~~a~~~~ig~Ga~~~~~a~~~~~~------------------ 105 (221)
.+..++ ..+| +.+++.|+++.++.. +...+..+++++..|.+++ ++|+||+++..+.
T Consensus 237 ~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 313 (416)
T PRK15099 237 MMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSR-LTEKRDITREIVKALKFVLPAVAAASFTVWL 313 (416)
T ss_pred HHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555 4788 578999999999977 5589999999999999999 3467788877665
Q ss_pred --HHH--------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchh
Q 038536 106 --KEV--------VDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGI 175 (221)
Q Consensus 106 --~~v--------~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Gi 175 (221)
|++ -+...+++++.....++......+...+-+.++++......+. ..++.+|+.+++.. .+|..|+
T Consensus 314 ~a~~ii~l~~g~~~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~l~i~l~~~li~--~~G~~G~ 390 (416)
T PRK15099 314 LRDFAIWLLFSNKFTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVS-QFTLLTGFAHWLIP--LHGALGA 390 (416)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HhhhHHH
Confidence 221 1224556666666666666666655555566676655555544 45677888888764 5799999
Q ss_pred hhhhHHhHHHHHHHHHHHHHh
Q 038536 176 WIGGIQAGALLQTILLSIITS 196 (221)
Q Consensus 176 w~~~~~~~~~~~~i~~~~~~~ 196 (221)
+++ +.+++.+..+++.+...
T Consensus 391 a~a-~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 391 AQA-YMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHH-HHHHHHHHHHHHHHHHH
Confidence 999 99999999998876654
No 20
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=98.88 E-value=1e-07 Score=85.94 Aligned_cols=151 Identities=17% Similarity=0.222 Sum_probs=109.0
Q ss_pred HHHHHHhc-CCCchhHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHcc--CCCCHHHHHHHHhH----------------
Q 038536 46 FLTILSGL-LPNPKLETSVLSVCLATISNLFTIP-DGLGTAASNRVSN--GAGNSETAHIAVRV---------------- 105 (221)
Q Consensus 46 ~~~~~~~~-lg~~~~~~Aa~~i~~~v~~~~~~~~-~gl~~a~~~~ig~--Ga~~~~~a~~~~~~---------------- 105 (221)
+.+.+.++ +| +++.++++.+.++..+...+. .|++.+....+++ |++|++++++..+.
T Consensus 21 i~~~~l~r~Lg--~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~ 98 (488)
T TIGR02900 21 IFRIVLSRILG--AEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIV 98 (488)
T ss_pred HHHHHHHHHhC--HHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666 68 567999999999888877765 5999999999999 99999999888775
Q ss_pred ----HHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHH-----HhhcC
Q 038536 106 ----KEVVDH------GTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALG-----FWLKS 170 (221)
Q Consensus 106 ----~~v~~~------~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~-----~~~~~ 170 (221)
+.+.+. ...++.+.....++.++..+..+.+||.+|.+..+..+++... +++.+...+. +..++
T Consensus 99 ~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i-~~~~~~~~~~~~~~~~~~~~ 177 (488)
T TIGR02900 99 FLLSPFIASTLLKDERSLYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI-VRISVVALLISAFLPYGLEY 177 (488)
T ss_pred HHhhHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH-HHHHHHHHHHHHHHhcChHH
Confidence 222211 1234667778888889999999999999999999999988874 3333322221 12244
Q ss_pred ccchhhhhhHHhHHHHHHHHHHHHHhhcCh
Q 038536 171 RGPGIWIGGIQAGALLQTILLSIITSPFNH 200 (221)
Q Consensus 171 g~~Giw~~~~~~~~~~~~i~~~~~~~~~~w 200 (221)
++.|..++ ..++..+..++..+++++.+|
T Consensus 178 ~v~g~~~~-~~i~~~~~~~~~~~~~~~~~~ 206 (488)
T TIGR02900 178 AVAGAYLS-LVLGELVSLLYLYFFFKRKKS 206 (488)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 56666667 677888877777665554433
No 21
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=98.84 E-value=2.2e-07 Score=84.17 Aligned_cols=176 Identities=16% Similarity=0.047 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHcc--
Q 038536 15 SEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISN-LFTIPDGLGTAASNRVSN-- 91 (221)
Q Consensus 15 ~~~a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~-~~~~~~gl~~a~~~~ig~-- 91 (221)
.+...+-.+.+.|.++. .+.+|....+.+.+++++| +.++|+.++.++.... -+.+..|++.+..++.||
T Consensus 24 ~~e~k~l~~ia~P~i~~-----~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ 96 (473)
T KOG1347|consen 24 VTESKELARLALPAILT-----FLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAF 96 (473)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhh
Confidence 45677778888887666 4556666668889999999 5689999999877776 788999999999999999
Q ss_pred CCCCHHHHHHHHhH-----------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 038536 92 GAGNSETAHIAVRV-----------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQ 142 (221)
Q Consensus 92 Ga~~~~~a~~~~~~-----------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~ 142 (221)
|+++++....+... |++-..+..|........+.......+.-.+|+.+++
T Consensus 97 ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~ 176 (473)
T KOG1347|consen 97 GAKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSIT 176 (473)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCc
Confidence 99999987666544 8888999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHHHHHHHhhcC
Q 038536 143 DFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFN 199 (221)
Q Consensus 143 ~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~ 199 (221)
....++...+. ++.+|+.|++.+++++|..|.-.+ ..+++.+.......+.....
T Consensus 177 ~~~~~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala-~~~s~w~~~~~l~~yi~~~~ 231 (473)
T KOG1347|consen 177 LPLLVIGLVAL-VLHILLTWLLVSKLGLGIKGAALA-LVASYWLNVRILLLYAVLSG 231 (473)
T ss_pred hHHHHHHHHHH-HHHHHHHHHhhhcccCCCccchHH-HHHHHHHHHHHHHHHheecC
Confidence 99999998887 678999999999999999999999 99999999888887776543
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=98.82 E-value=8.2e-08 Score=86.93 Aligned_cols=146 Identities=13% Similarity=0.057 Sum_probs=106.6
Q ss_pred HHHHHHhc-CCCchhHH-HHHHHHHHHHHHHHhHHH--HHHHHHHHHHccCCCCH-HHHHHHHhH---------------
Q 038536 46 FLTILSGL-LPNPKLET-SVLSVCLATISNLFTIPD--GLGTAASNRVSNGAGNS-ETAHIAVRV--------------- 105 (221)
Q Consensus 46 ~~~~~~~~-lg~~~~~~-Aa~~i~~~v~~~~~~~~~--gl~~a~~~~ig~Ga~~~-~~a~~~~~~--------------- 105 (221)
+...+.++ +|+ .+. ++++++.++..+...... |++.+..+...+ +++. |++++....
T Consensus 22 ~~~~~~a~~lG~--~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (502)
T TIGR01695 22 VRDAIIASAFGA--GLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTK-AKKKEKEARRAFANTVTTLLILSLLLVVL 98 (502)
T ss_pred HHHHHHHHHhCC--ChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666 884 567 799999998877766644 566666555554 3332 566644322
Q ss_pred ------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHh
Q 038536 106 ------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFW 167 (221)
Q Consensus 106 ------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~ 167 (221)
+|..+.+..++++..++.++.++..+.++++|+.||.+.+++.+++...+ .+.. ++...
T Consensus 99 ~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~-~i~~--~~~~~ 175 (502)
T TIGR01695 99 IGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFSPILFNIG-VILS--LLFFD 175 (502)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHHHHHHHHH-HHHH--HHHHH
Confidence 35556688999999999999999999999999999999999999988743 3332 22234
Q ss_pred hcCccchhh--hhhHHhHHHHHHHHHHHHHhhc
Q 038536 168 LKSRGPGIW--IGGIQAGALLQTILLSIITSPF 198 (221)
Q Consensus 168 ~~~g~~Giw--~~~~~~~~~~~~i~~~~~~~~~ 198 (221)
.++|..|+. ++ ..+++.+..++..+++++.
T Consensus 176 ~~~g~~~~~~~~~-~~i~~~~~~~~~~~~~~~~ 207 (502)
T TIGR01695 176 WNYGQYSLALAIG-VLIGGVAQLLIQLPFLRKA 207 (502)
T ss_pred cccchHHHHHHHH-HHHHHHHHHHHHHHHHHHC
Confidence 578898888 88 8899998888877666543
No 23
>PRK15099 O-antigen translocase; Provisional
Probab=98.64 E-value=1e-06 Score=78.32 Aligned_cols=148 Identities=13% Similarity=0.082 Sum_probs=103.1
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHccCCCCHHHHHHHHhH-----------------
Q 038536 44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTI-PDGLGTAASNRVSNGAGNSETAHIAVRV----------------- 105 (221)
Q Consensus 44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~-~~gl~~a~~~~ig~Ga~~~~~a~~~~~~----------------- 105 (221)
+...-.++..+| +++.+..+....+..+...+ ..|++.+.+..+++=++|+|++++....
T Consensus 22 ~l~~~i~ar~Lg--~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~ 99 (416)
T PRK15099 22 LLVVKLLAVSFG--PAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQYHDQPQQLRAVVGTSSAMVLGFSTLLALVFL 99 (416)
T ss_pred HHHHHHHHhhcC--cHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666778 46777777777777766555 6777777777888734678888886655
Q ss_pred ---HHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhh
Q 038536 106 ---KEVVDH------GTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIW 176 (221)
Q Consensus 106 ---~~v~~~------~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw 176 (221)
+.+... ....+.+..+..++..+.....+++||.||++.++..++++.. +++.+ +++.+.. .|+.|.-
T Consensus 100 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~~-~~i~l-~i~~~~~-~Gv~Ga~ 176 (416)
T PRK15099 100 LAAAPISQGLFGHTDYQGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGSL-IGVAA-YYLCYRL-GGYEGAL 176 (416)
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHH-hcchHHH
Confidence 222111 1234555555566778888999999999999999999988874 44444 4444322 3999999
Q ss_pred hhhHHhHHHHHHHHHHHHHhh
Q 038536 177 IGGIQAGALLQTILLSIITSP 197 (221)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~~~ 197 (221)
++ +.+++.+..+.+.+.+++
T Consensus 177 ia-t~i~~~i~~~~~~~~~~~ 196 (416)
T PRK15099 177 LG-LALVPALVVLPAGIMLIR 196 (416)
T ss_pred HH-HHHHHHHHHHHHHHHHHH
Confidence 99 999998888776666544
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=98.53 E-value=3.3e-06 Score=72.55 Aligned_cols=60 Identities=30% Similarity=0.378 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH
Q 038536 44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV 105 (221)
Q Consensus 44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~ 105 (221)
..+...+++.+| +.++++|+++.++..+...++.+++.+..+.+++ |+||.+++++..+.
T Consensus 236 ~~~~~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 297 (342)
T TIGR00797 236 FALLALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARV 297 (342)
T ss_pred HHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445567788888 5689999999999999999999999999999999 99999999998875
No 25
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=98.41 E-value=8.5e-05 Score=67.78 Aligned_cols=149 Identities=15% Similarity=-0.008 Sum_probs=120.8
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH---------------
Q 038536 44 HNFLTILSGLLPNPKLETSVLSVCLATISNLF-TIPDGLGTAASNRVSN--GAGNSETAHIAVRV--------------- 105 (221)
Q Consensus 44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~-~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~--------------- 105 (221)
..+++.+++.+.++ .++...-+.++.++=. .+..++++...+..++ ..+|.++.++..+.
T Consensus 252 lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~ 329 (518)
T COG0728 252 LLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAG 329 (518)
T ss_pred HHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778889999743 5788888888888844 6778889999999999 88888887766554
Q ss_pred -------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHH
Q 038536 106 -------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGF 166 (221)
Q Consensus 106 -------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~ 166 (221)
++-..+..+.+..++++.++....-+..-.+.+.+|+|.|+.+.+++. ++++-+++++.
T Consensus 330 l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~~l~~~l~- 407 (518)
T COG0728 330 LLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNILLNLLLI- 407 (518)
T ss_pred HHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHHHHHHHHH-
Confidence 666677788999999999999999999999999999999999999997 55676774443
Q ss_pred hhcCccchhhhhhHHhHHHHHHHHHHHHHhhc
Q 038536 167 WLKSRGPGIWIGGIQAGALLQTILLSIITSPF 198 (221)
Q Consensus 167 ~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~ 198 (221)
+.+|..|+-.+ ..++.++.+.+.++.++|.
T Consensus 408 -~~~~~~giala-~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 408 -PPLGHVGLALA-TSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred -hhccchHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 46788888888 7787778887777766543
No 26
>PRK10459 colanic acid exporter; Provisional
Probab=98.25 E-value=0.00036 Score=63.21 Aligned_cols=143 Identities=16% Similarity=0.130 Sum_probs=104.0
Q ss_pred HHHHHhc-CCCchhHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHccCCCCHHHHHHHHhH-------------------
Q 038536 47 LTILSGL-LPNPKLETSVLSVCLATISNLFT-IPDGLGTAASNRVSNGAGNSETAHIAVRV------------------- 105 (221)
Q Consensus 47 ~~~~~~~-lg~~~~~~Aa~~i~~~v~~~~~~-~~~gl~~a~~~~ig~Ga~~~~~a~~~~~~------------------- 105 (221)
+.++.++ +| +.+++.|+.+.++..+... +...++...-|..++-.+|.++.++..+.
T Consensus 230 d~~~lg~~lg--~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~ 307 (492)
T PRK10459 230 DTILIGRILG--AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKIQDDTEKLRVGFLKLLSVLGIINFPLLLGLMVV 307 (492)
T ss_pred chhhhhHhhc--hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555 45 4678999999988776433 33345666777777744566666665444
Q ss_pred -HHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhh
Q 038536 106 -KEVVD--------HGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIW 176 (221)
Q Consensus 106 -~~v~~--------~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw 176 (221)
|+++. .+...+.+.++..++.......+.++++.||+|.++..+++.. ++.+|..+++. ..+|..|+.
T Consensus 308 a~~ii~ll~g~~~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~--~~~G~~g~a 384 (492)
T PRK10459 308 SNNFVPLVFGEKWNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGG--QLAGLIGVA 384 (492)
T ss_pred hHHHHHHhcChhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHH--hhccHHHHH
Confidence 44332 3456778888888888889999999999999999999888776 45677766554 357999999
Q ss_pred hhhHHhHHHHHHHHHHHHH
Q 038536 177 IGGIQAGALLQTILLSIIT 195 (221)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~ 195 (221)
++ +.+++.+..++..+..
T Consensus 385 ~a-~~i~~~~~~~~~~~~~ 402 (492)
T PRK10459 385 LG-FLLVQIINTILSYFLM 402 (492)
T ss_pred HH-HHHHHHHHHHHHHHHH
Confidence 99 9999988888877766
No 27
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=98.04 E-value=0.00015 Score=65.40 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=116.6
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHcc-CCCCHHHHHHHHhH----------------------
Q 038536 51 SGLLPNPKLETSVLSVCLATISNLFTIPD--GLGTAASNRVSN-GAGNSETAHIAVRV---------------------- 105 (221)
Q Consensus 51 ~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~--gl~~a~~~~ig~-Ga~~~~~a~~~~~~---------------------- 105 (221)
+..+|.+ .+.-|+.++.++-.+...... +++.+.-|...+ =+++.|++++..+.
T Consensus 2 A~~fG~s-~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~ 80 (451)
T PF03023_consen 2 AYFFGAS-AEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAREKGEEEARRFISTLLTILLIISLLLTLLGILFAPP 80 (451)
T ss_pred cHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566763 456789999999999887654 478898899988 76778888887765
Q ss_pred ----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCc---c
Q 038536 106 ----------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSR---G 172 (221)
Q Consensus 106 ----------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g---~ 172 (221)
++..+.+.+++++..+..++.++..++.+++++.+|-..+....++.+... +...+++ ....| +
T Consensus 81 iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~-I~~~~~~--~~~~~~~~i 157 (451)
T PF03023_consen 81 IVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSI-ILSLLLL--SNSWGQENI 157 (451)
T ss_pred HHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-HHHHHHH--HHhcCchHH
Confidence 888999999999999999999999999999999999999999888877432 3322332 23456 7
Q ss_pred chhhhhhHHhHHHHHHHHHHHHHhhcCh
Q 038536 173 PGIWIGGIQAGALLQTILLSIITSPFNH 200 (221)
Q Consensus 173 ~Giw~~~~~~~~~~~~i~~~~~~~~~~w 200 (221)
.++-+| ..++..++.++.+...++..+
T Consensus 158 ~~la~g-~~~g~~~~~l~~l~~~~~~~~ 184 (451)
T PF03023_consen 158 YALAWG-VLIGAIIQFLIQLPYLRRFGF 184 (451)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHCCC
Confidence 888889 999999999998888876543
No 28
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=97.94 E-value=0.00084 Score=60.53 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CC
Q 038536 16 EEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GA 93 (221)
Q Consensus 16 ~~a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga 93 (221)
+...++.+..+|..... ...++....+..+.++.-. +.+++-|+...++......+...++...-|.+++ .+
T Consensus 210 ~~~~~~l~~~~p~~~~~-----~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~ 283 (480)
T COG2244 210 ALLKELLRFGLPLLLSS-----LLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAE 283 (480)
T ss_pred HHHHHHHHHhhHHHHHH-----HHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44555556666655543 2222234466677766432 4678899988999999999999999999999999 77
Q ss_pred CCHHHHHHHHhH--------------------HHHHH------H--HHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH
Q 038536 94 GNSETAHIAVRV--------------------KEVVD------H--GTTMAPLVCLLVILESLKCVLSGVARGCGWQDFG 145 (221)
Q Consensus 94 ~~~~~a~~~~~~--------------------~~v~~------~--~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~ 145 (221)
+|.++.++..+. ++... + +...+.+..+..++.+........+++.|+++..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~ 363 (480)
T COG2244 284 GDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLL 363 (480)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhh
Confidence 777766555543 22211 1 6678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhH
Q 038536 146 AYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGI 180 (221)
Q Consensus 146 ~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~ 180 (221)
+..+.++. ++.+.+.+++. ..+|..|...+ .
T Consensus 364 ~~~~~~~~-i~~~~l~~~li--~~~g~~g~~~a-~ 394 (480)
T COG2244 364 LLISLISA-LLNLILNLLLI--PRFGLIGAAIA-T 394 (480)
T ss_pred HHHHHHHH-HHHHHHHhHHH--HhhhhhhHHHH-H
Confidence 99999887 44455555554 36678888888 6
No 29
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.68 E-value=0.00048 Score=51.88 Aligned_cols=79 Identities=15% Similarity=0.113 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHHHHHHH
Q 038536 116 APLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIIT 195 (221)
Q Consensus 116 l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~~~~~~ 195 (221)
+.+.+...++.++....+.++++.||+|..+..++.+. ++.+++.+++. +++|..|.-++ +.+++.+..++..+..
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li--~~~G~~Gaa~a-~~i~~~~~~~~~~~~~ 77 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILI--PRFGIYGAAIA-TAISEIVSFILNLWYV 77 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHH--HHHHHhHHHHH-HHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999998887 67788888884 57899999999 9999999988888777
Q ss_pred hhc
Q 038536 196 SPF 198 (221)
Q Consensus 196 ~~~ 198 (221)
+|.
T Consensus 78 ~k~ 80 (146)
T PF14667_consen 78 RKK 80 (146)
T ss_pred HHH
Confidence 654
No 30
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=96.58 E-value=0.16 Score=41.35 Aligned_cols=149 Identities=21% Similarity=0.207 Sum_probs=91.4
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHcc-CCCCHHHHHHHHhH---------------H
Q 038536 44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTI-PDGLGTAASNRVSN-GAGNSETAHIAVRV---------------K 106 (221)
Q Consensus 44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~-~~gl~~a~~~~ig~-Ga~~~~~a~~~~~~---------------~ 106 (221)
+...-.++..+| +++..-++...++..+...+ -.|++.+..-.+++ .++ .++.++.... .
T Consensus 20 ~~~~~il~r~l~--~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~ 96 (273)
T PF01943_consen 20 FITIPILARYLG--PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK-KELRSAYFSSVLFLLLIFSLIFLLIL 96 (273)
T ss_pred HHHHHHHHHHhC--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556677 56788888888888876665 68888888888887 433 2233333222 0
Q ss_pred HH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhH
Q 038536 107 EV------VDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGI 180 (221)
Q Consensus 107 ~v------~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~ 180 (221)
-+ -+....+........++........+.+++.++.+.....++..... .+....++. ..+.+..+.-.+ .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~-~ 173 (273)
T PF01943_consen 97 LIASFFGNPSLSLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL-SLLLILLLL-FLGSSLWGFLLG-L 173 (273)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHhhhHHHHHHH-H
Confidence 00 01111122222222246778888999999999999988888887743 332323332 234447777777 7
Q ss_pred HhHHHHHHHHHHHHHhhc
Q 038536 181 QAGALLQTILLSIITSPF 198 (221)
Q Consensus 181 ~~~~~~~~i~~~~~~~~~ 198 (221)
.++..+..++.....++.
T Consensus 174 ~~~~~~~~~~~~~~~~~~ 191 (273)
T PF01943_consen 174 VISSLVSLIISLFYLRRK 191 (273)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888877777666643
No 31
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=96.28 E-value=0.64 Score=40.06 Aligned_cols=98 Identities=10% Similarity=0.066 Sum_probs=71.3
Q ss_pred HHHHHHhc-CCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHccCCCCHHHHHHHHhH-------------------
Q 038536 46 FLTILSGL-LPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSNGAGNSETAHIAVRV------------------- 105 (221)
Q Consensus 46 ~~~~~~~~-lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~Ga~~~~~a~~~~~~------------------- 105 (221)
+++.-.++ ..++.+.+|+|+++..+.-++..+...+-+.+..++.+ +++..++-...-.
T Consensus 33 iiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-~rsrr~~vl~~~vag~v~avi~~LIa~TpLG~ 111 (345)
T PF07260_consen 33 IINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-KRSRRKAVLCMAVAGAVAAVIHLLIAWTPLGN 111 (345)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-hhhhHHHHHHHHHHHHHHHHHHHHHHhCchHH
Confidence 33344444 44444569999999999999999999999999888863 2222222111111
Q ss_pred ----------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchh
Q 038536 106 ----------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDF 144 (221)
Q Consensus 106 ----------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~ 144 (221)
|++.+.+...+.++.+..+++++.-...|++-=..++..
T Consensus 112 ~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 112 YLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 899999999999999999999999999999984444433
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=95.96 E-value=0.68 Score=37.38 Aligned_cols=143 Identities=17% Similarity=0.174 Sum_probs=88.3
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHccCCCCHHHHHHHHhH-------------H---HH
Q 038536 46 FLTILSGLLPNPKLETSVLSVCLATISNLFTI-PDGLGTAASNRVSNGAGNSETAHIAVRV-------------K---EV 108 (221)
Q Consensus 46 ~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~-~~gl~~a~~~~ig~Ga~~~~~a~~~~~~-------------~---~v 108 (221)
....++..+| +++...++....+..+...+ ..|+...... +.++++++.++..+. . -+
T Consensus 7 ~~~~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PF13440_consen 7 FLILLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSLVR---SAARDKQDIRSLLRFSLLVSLLLAVILAILAILI 81 (251)
T ss_pred HHHHHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677 56788888888888877665 4555444332 334555555555443 0 00
Q ss_pred HHH-----HHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhH
Q 038536 109 VDH-----GTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAG 183 (221)
Q Consensus 109 ~~~-----~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~ 183 (221)
... ...++....+..++........+.+|+.+|.+......+....+. ......+. ..+.+..+..++ ..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~-~~~~ 158 (251)
T PF13440_consen 82 AYFFGDPELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLR-LLLLVLLL-YLGLNLWSILLA-FIIS 158 (251)
T ss_pred HHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-HHHHHHHH-HHHhhHHHHHHH-HHHH
Confidence 000 112234455667778888899999999999999988888887543 22222222 234477777788 7888
Q ss_pred HHHHHHHHHHHHh
Q 038536 184 ALLQTILLSIITS 196 (221)
Q Consensus 184 ~~~~~i~~~~~~~ 196 (221)
..+..++.....+
T Consensus 159 ~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 159 ALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHhc
Confidence 8877766655443
No 33
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=95.47 E-value=1.7 Score=40.16 Aligned_cols=149 Identities=12% Similarity=0.081 Sum_probs=106.3
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHcc--CCCCHHHHHHHHhH-----------------
Q 038536 47 LTILSGLLPNPKLETSVLSVCLATISNLFTIPDG--LGTAASNRVSN--GAGNSETAHIAVRV----------------- 105 (221)
Q Consensus 47 ~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~g--l~~a~~~~ig~--Ga~~~~~a~~~~~~----------------- 105 (221)
...++..+|.+ ....|+.+++++-.++--.+.+ ++++--+.-.+ .++..|++++....
T Consensus 31 d~~iA~~fGa~-~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~ 109 (518)
T COG0728 31 DVLIAAAFGAG-AAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGI 109 (518)
T ss_pred HHHHHHHhCCc-hHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888864 4567999999998887776544 56888888877 44444444444333
Q ss_pred ---H-------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhc
Q 038536 106 ---K-------------EVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLK 169 (221)
Q Consensus 106 ---~-------------~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~ 169 (221)
| +....+....++.....++.++..+..++++..++-..+.+.-++-+..+ |..+.++....+
T Consensus 110 l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~a~aPvl~Nv~~-I~~~l~~~~~~~ 188 (518)
T COG0728 110 LFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIPAFAPVLLNVSV-IGLALFLGPYFD 188 (518)
T ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechhhhhHHHHHHHH-HHHHHHhccchh
Confidence 2 22235667779999999999999999999999999999998888777543 333444443333
Q ss_pred CccchhhhhhHHhHHHHHHHHHHHHHhhc
Q 038536 170 SRGPGIWIGGIQAGALLQTILLSIITSPF 198 (221)
Q Consensus 170 ~g~~Giw~~~~~~~~~~~~i~~~~~~~~~ 198 (221)
....++-+| ..++-+.+..+.+..+++.
T Consensus 189 ~~~~~La~g-vl~Gg~~Q~l~~lp~l~~~ 216 (518)
T COG0728 189 PPLLALAWG-VLIGGLLQLLVQLPALRKA 216 (518)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHc
Confidence 234566677 7888888888888888765
No 34
>PRK10459 colanic acid exporter; Provisional
Probab=94.66 E-value=2.3 Score=38.42 Aligned_cols=139 Identities=13% Similarity=0.130 Sum_probs=82.6
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHccCCCCHHHHHHHHhH----------------HHHH
Q 038536 47 LTILSGLLPNPKLETSVLSVCLATISNLFTI-PDGLGTAASNRVSNGAGNSETAHIAVRV----------------KEVV 109 (221)
Q Consensus 47 ~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~-~~gl~~a~~~~ig~Ga~~~~~a~~~~~~----------------~~v~ 109 (221)
...++..+| +++...++.+..+..+...+ -.|++.+. +-+-.++.+........ +-+.
T Consensus 29 ~~ilaR~L~--p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (492)
T PRK10459 29 LTVLARILD--NHQFGLLTMSLVIIGFADTLSDMGIGASI---IQRQDISHLQLSTLYWLNVGLGIVVFVLVFLLSPLIA 103 (492)
T ss_pred HHHHHHhCC--HHHccHHHHHHHHHHHHHHHHHcCHHHHH---HhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455577 45666677777666664433 34565543 22233333333333322 1111
Q ss_pred -----HHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHH
Q 038536 110 -----DHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGA 184 (221)
Q Consensus 110 -----~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~ 184 (221)
+.....+.+.++..++.++.....+.+++..+.+.....+++.... ...+...+. ..++|..+.-++ ..++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~~~i~-~~~~~i~~~-~~~~g~~~l~~~-~~~~~ 180 (492)
T PRK10459 104 DFYHNPELAPLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEISAVVA-GFTFAVVSA-FFWPGALAAILG-YLVNS 180 (492)
T ss_pred HHcCChhhHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHH-HHCCcHHHHHHH-HHHHH
Confidence 0122455666677777888888899999999999888888877643 344444443 357788888788 78887
Q ss_pred HHHHHHHHH
Q 038536 185 LLQTILLSI 193 (221)
Q Consensus 185 ~~~~i~~~~ 193 (221)
.+..++...
T Consensus 181 ~~~~l~~~~ 189 (492)
T PRK10459 181 SVRTLLFGY 189 (492)
T ss_pred HHHHHHHHH
Confidence 777665543
No 35
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=90.53 E-value=3.2 Score=37.28 Aligned_cols=107 Identities=19% Similarity=0.194 Sum_probs=74.0
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHcc--CCCCHHHHHHH-HhH------------HH
Q 038536 44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIP-DGLGTAASNRVSN--GAGNSETAHIA-VRV------------KE 107 (221)
Q Consensus 44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~-~gl~~a~~~~ig~--Ga~~~~~a~~~-~~~------------~~ 107 (221)
+.....++..+| +++..-++.+..+..+...+. .|+..+..-.+++ ..++....+.. ... ..
T Consensus 27 ~i~~~~lar~lg--~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 104 (480)
T COG2244 27 LITIPLLARLLG--PEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLLLILLSVLLLLLLALILLLLLLL 104 (480)
T ss_pred HHHHHHHHHHhC--cccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677 345666777787788777766 8899999999988 44454545554 333 11
Q ss_pred HH-------HHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHH
Q 038536 108 VV-------DHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAA 152 (221)
Q Consensus 108 v~-------~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~ 152 (221)
+. +.....+.......+......+..+.+|+.++.+......+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (480)
T COG2244 105 IAYLLAPIDPVLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS 156 (480)
T ss_pred HHHHhcccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH
Confidence 11 1233456677888889999999999999999999998884444
No 36
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=80.50 E-value=18 Score=33.85 Aligned_cols=84 Identities=7% Similarity=0.040 Sum_probs=64.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHH--hHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHH
Q 038536 113 TTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYL--CGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTIL 190 (221)
Q Consensus 113 ~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~--i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~ 190 (221)
...+..++...|+.+++-+..+.+++..+++-....+..-..+ +.+..+|++..+ ++|..|+-++ -.+...+|.+.
T Consensus 385 ~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~A-N~iNM~lRI~y 462 (549)
T PF04506_consen 385 PSLLRAYCYYIPFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILA-NCINMSLRIIY 462 (549)
T ss_pred hHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHH-HHHHHHHHHHH
Confidence 4567888999999999999999999999887665444333321 223456777665 7999999999 99999999999
Q ss_pred HHHHHhhc
Q 038536 191 LSIITSPF 198 (221)
Q Consensus 191 ~~~~~~~~ 198 (221)
+..++++.
T Consensus 463 s~~fI~~~ 470 (549)
T PF04506_consen 463 SLRFIRRY 470 (549)
T ss_pred HHHHHHHH
Confidence 98887653
No 37
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=74.84 E-value=12 Score=29.27 Aligned_cols=58 Identities=12% Similarity=0.004 Sum_probs=37.2
Q ss_pred HHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHHHHHHHhhcChHHHHHHHHHHh
Q 038536 152 ASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSV 211 (221)
Q Consensus 152 ~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~w~~~~~~~~~r~ 211 (221)
+..+-.+|. |++.-.+.+.+..-++- +.+...+++.+..+-|++.+...+.+-+.+|-
T Consensus 25 A~ivS~vPi-~LF~~Ih~m~~~~~~I~-f~i~t~~sayll~fAYkNvk~~lKhKIa~kR~ 82 (170)
T PF07074_consen 25 ALIVSAVPI-WLFWRIHQMDLYDSLIV-FVIVTLVSAYLLAFAYKNVKFVLKHKIAVKRE 82 (170)
T ss_pred HHHHHHHHH-HHHHHHHhcccchhhHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 333345676 55544567777777777 78888888888888887776544443343433
No 38
>COG5393 Predicted membrane protein [Function unknown]
Probab=74.46 E-value=19 Score=26.37 Aligned_cols=56 Identities=14% Similarity=0.029 Sum_probs=32.0
Q ss_pred HHHHhhcCccchhhhhhHHhHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhccccC
Q 038536 163 ALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSVANATSDILK 220 (221)
Q Consensus 163 ~~~~~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~w~~~~~~~~~r~~~~~~~~~~ 220 (221)
+..++..+.....-.+ +.+-.++..+.|.|.+++.........-++..++- +++|+
T Consensus 73 i~~f~~tyRl~a~~a~-~~vl~vl~~i~ciW~lrks~~s~l~~aT~~ELanD-Re~L~ 128 (131)
T COG5393 73 IWAFDPTYRLNAMIAT-TAVLLVLALIGCIWTLRKSRKSTLLRATRHELAND-RELLE 128 (131)
T ss_pred HHHcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHhhh-HHhhc
Confidence 3344445555555666 67777888888888887764443333333333332 44444
No 39
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=73.51 E-value=1.2 Score=33.45 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=29.1
Q ss_pred hhhhhhcCCChHHHHHHHHHHHHHHhHHhHH
Q 038536 2 GKILIFMGQYPQISEEAGEFSMWLVPASSVI 32 (221)
Q Consensus 2 ~~il~~~g~~~~~~~~a~~y~~~~~p~l~~~ 32 (221)
++++..++.|+|+.+.+.+|+++..++.++.
T Consensus 95 ~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 125 (162)
T PF01554_consen 95 EFILSLFGNDPEVIEIARQYLRIMAFSIPFF 125 (162)
T ss_dssp HCCHCTSSSTTCCHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHhhccchhhhhHHHHH
Confidence 6788899999999999999999999999987
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=67.50 E-value=1e+02 Score=28.33 Aligned_cols=135 Identities=13% Similarity=0.023 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH-----------------------HHHHHH--
Q 038536 60 ETSVLSVCLATISNLF-TIPDGLGTAASNRVSN--GAGNSETAHIAVRV-----------------------KEVVDH-- 111 (221)
Q Consensus 60 ~~Aa~~i~~~v~~~~~-~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~-----------------------~~v~~~-- 111 (221)
+.+.|.+++|.-++.- .++..+=...-..-+| -.++.|+.|+.... +-++..
T Consensus 276 ~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lyg 355 (530)
T KOG2864|consen 276 DQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYG 355 (530)
T ss_pred hhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHc
Confidence 3567888888877743 3445566677777788 66667888877655 222221
Q ss_pred --------HHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHH--HhHHHHHHHHHHhhcCccchhhhhhHH
Q 038536 112 --------GTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASY--LCGIPVAAALGFWLKSRGPGIWIGGIQ 181 (221)
Q Consensus 112 --------~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~--~i~ip~~~~~~~~~~~g~~Giw~~~~~ 181 (221)
+...+.+++...++.+++-+..+...+.++.+-.--.+-+-.. ++.+.++|++.-+ +|..|.-.+ -.
T Consensus 356 G~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlA-Ni 432 (530)
T KOG2864|consen 356 GSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILA-NI 432 (530)
T ss_pred CccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHH-HH
Confidence 2356788999999999999999999999887654432211111 1224467877764 456888888 78
Q ss_pred hHHHHHHHHHHHHHhh
Q 038536 182 AGALLQTILLSIITSP 197 (221)
Q Consensus 182 ~~~~~~~i~~~~~~~~ 197 (221)
+.+.++.+.+..++++
T Consensus 433 iNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 433 INMSLRILYSLRFIRH 448 (530)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888887777666654
No 41
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.19 E-value=22 Score=22.76 Aligned_cols=18 Identities=6% Similarity=0.213 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHhhhhhcc
Q 038536 200 HYKKVNVLSHSVANATSD 217 (221)
Q Consensus 200 w~~~~~~~~~r~~~~~~~ 217 (221)
++.+.++.++++++.+++
T Consensus 46 ~r~~~~~~~k~l~~le~e 63 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKE 63 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555544443
No 42
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=56.25 E-value=1e+02 Score=24.57 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=35.9
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc
Q 038536 46 FLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN 91 (221)
Q Consensus 46 ~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~ 91 (221)
.+..+.+.+-+ +.+++-|+++.++......+...+.+...|..++
T Consensus 227 ~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~ 271 (273)
T PF01943_consen 227 IDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSR 271 (273)
T ss_pred hHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456665543 5789999999999999999999999988887753
No 43
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=48.06 E-value=1.7e+02 Score=25.29 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=24.4
Q ss_pred HHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHH
Q 038536 97 ETAHIAVRVKEVVDHGTTMAPLVCLLVILESL 128 (221)
Q Consensus 97 ~~a~~~~~~~~v~~~~~~~l~i~~~~~~~~~~ 128 (221)
+.+|+..-...+.+...+.++...++.+|..+
T Consensus 126 ~~~K~ifS~rS~vEl~KS~lKV~vLslif~f~ 157 (349)
T COG4792 126 QNAKRIFSLRSVVELLKSLLKVVVLSLIFWFM 157 (349)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666688899999999888887777644
No 44
>PRK09546 zntB zinc transporter; Reviewed
Probab=47.64 E-value=58 Score=27.98 Aligned_cols=50 Identities=12% Similarity=-0.089 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHh-hcCc-c------chhhhhhHHhHHHHHHHHHHHHHhhcCh
Q 038536 147 YVYLAASYLCGIPVAAALGFW-LKSR-G------PGIWIGGIQAGALLQTILLSIITSPFNH 200 (221)
Q Consensus 147 ~~~~~~~~~i~ip~~~~~~~~-~~~g-~------~Giw~~~~~~~~~~~~i~~~~~~~~~~w 200 (221)
..++++.+ .+|+.++.+++ .+++ + .|.|+. ++-.++.++..+++++|.+|
T Consensus 266 ~Ltilt~I--flPlT~IaGiyGMNf~~mPel~~~~gy~~~--l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMAMV--FLPTTFLTGLFGVNLGGIPGGGWPFGFSIF--CLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHH--HHHHHHHHhhhccccCCCCCcCCcchHHHH--HHHHHHHHHHHHHHHHhccc
Confidence 44455543 35877776653 2221 1 244433 33444555556677888888
No 45
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=45.75 E-value=1.8e+02 Score=25.20 Aligned_cols=25 Identities=12% Similarity=-0.120 Sum_probs=14.8
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHhhcCh
Q 038536 174 GIWIGGIQAGALLQTILLSIITSPFNH 200 (221)
Q Consensus 174 Giw~~~~~~~~~~~~i~~~~~~~~~~w 200 (221)
|.|++ +...++.+++.+++++|.+|
T Consensus 291 g~~~~--l~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 291 GYPGA--IILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHccc
Confidence 44444 33444455556778888888
No 46
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=42.68 E-value=83 Score=26.73 Aligned_cols=50 Identities=10% Similarity=-0.023 Sum_probs=25.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHh-hcCc-c------chhhhhhHHhHHHHHHHHHHHHHhhcCh
Q 038536 147 YVYLAASYLCGIPVAAALGFW-LKSR-G------PGIWIGGIQAGALLQTILLSIITSPFNH 200 (221)
Q Consensus 147 ~~~~~~~~~i~ip~~~~~~~~-~~~g-~------~Giw~~~~~~~~~~~~i~~~~~~~~~~w 200 (221)
.+++++.. ..|..++.+++ .+++ + .|.|+. ....++.+++.++++++.+|
T Consensus 260 ~LTvvt~I--flP~t~IaGiyGMNf~~mP~l~~~~gy~~~--l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 260 ILTVVSTI--FIPLTFIAGIYGMNFKFMPELNWKYGYPAV--LIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHH--HHHHHHHHHHHhCCcccCccccchhHHHHH--HHHHHHHHHHHHHHHHHcCC
Confidence 44555542 36666665542 2221 1 233433 34444555566778888888
No 47
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=39.50 E-value=51 Score=25.64 Aligned_cols=43 Identities=7% Similarity=-0.049 Sum_probs=28.4
Q ss_pred cCccchhhhhhHHhHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 038536 169 KSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSVA 212 (221)
Q Consensus 169 ~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~w~~~~~~~~~r~~ 212 (221)
.-|+.+++.+ .++..++..+++++.+++.-|..-.+-..+|-+
T Consensus 10 ~~~~~~~~~~-~~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~ 52 (175)
T PRK14472 10 SGGLLSPNPG-LIFWTAVTFVIVLLILKKIAWGPILSALEEREK 52 (175)
T ss_pred cCCccCCCHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3467777777 777788888888777777666555444444433
No 48
>PRK11677 hypothetical protein; Provisional
Probab=35.45 E-value=78 Score=23.81 Aligned_cols=40 Identities=10% Similarity=0.065 Sum_probs=20.9
Q ss_pred hhhhHHhHHHHHHHHHHHHHhhcCh--------HHHHHHHHHHhhhhhc
Q 038536 176 WIGGIQAGALLQTILLSIITSPFNH--------YKKVNVLSHSVANATS 216 (221)
Q Consensus 176 w~~~~~~~~~~~~i~~~~~~~~~~w--------~~~~~~~~~r~~~~~~ 216 (221)
|+. .+++-++..++.++..|.++. ++.+++++.++++..+
T Consensus 3 W~~-a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~ele~Ykq 50 (134)
T PRK11677 3 WEY-ALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAELEEYRQ 50 (134)
T ss_pred HHH-HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555 555555556665555554432 3445555555554443
No 49
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=35.29 E-value=2.9e+02 Score=23.70 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=28.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHh-hcCc-c------chhhhhhHHhHHHHHHHHHHHHHhhcCh
Q 038536 147 YVYLAASYLCGIPVAAALGFW-LKSR-G------PGIWIGGIQAGALLQTILLSIITSPFNH 200 (221)
Q Consensus 147 ~~~~~~~~~i~ip~~~~~~~~-~~~g-~------~Giw~~~~~~~~~~~~i~~~~~~~~~~w 200 (221)
+.++++. +.+|..++.+++ .+++ + .|.|++ .+..++.+++.+++++|.+|
T Consensus 264 ~LTi~s~--iflPpTlIagiyGMNf~~mPel~~~~Gy~~~--l~~m~~~~~~~~~~frrk~W 321 (322)
T COG0598 264 ILTIVST--IFLPPTLITGFYGMNFKGMPELDWPYGYPIA--LILMLLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHHHH--HHHhhHHHHcccccCCCCCcCCCCcccHHHH--HHHHHHHHHHHHHHHHhcCc
Confidence 3444443 236666666643 2222 1 256666 45555666666788888888
No 50
>COG3771 Predicted membrane protein [Function unknown]
Probab=31.14 E-value=92 Score=21.59 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=16.6
Q ss_pred HHhHHHHHHHHHH-HHHhhcChHHHHHHHHHHhhhh
Q 038536 180 IQAGALLQTILLS-IITSPFNHYKKVNVLSHSVANA 214 (221)
Q Consensus 180 ~~~~~~~~~i~~~-~~~~~~~w~~~~~~~~~r~~~~ 214 (221)
..+++++++++.+ .+++..+-+++.+++....+++
T Consensus 53 ~~lgwli~g~fy~k~~l~~~~l~rqiKr~~~q~~~~ 88 (97)
T COG3771 53 FALGWLICGLFYLKVRLSLMRLERQIKRLENQLSDV 88 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 4555665555543 2333344455555544444433
No 51
>PF14163 SieB: Superinfection exclusion protein B
Probab=28.79 E-value=2.1e+02 Score=21.51 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=14.0
Q ss_pred HHHHHHhHHHHHHHHHHhhc--CccchhhhhhHHh
Q 038536 150 LAASYLCGIPVAAALGFWLK--SRGPGIWIGGIQA 182 (221)
Q Consensus 150 ~~~~~~i~ip~~~~~~~~~~--~g~~Giw~~~~~~ 182 (221)
+.+..++..|-.+.-....+ ...++-|++ ..+
T Consensus 7 i~~~~llf~P~~~~~~l~l~~~~~~y~~~i~-~~f 40 (151)
T PF14163_consen 7 IFSGLLLFLPESLLEWLNLDKFEIKYQPWIG-LIF 40 (151)
T ss_pred HHHHHHHHCCHHHHHHhCcchHHHhcchHHH-HHH
Confidence 33444444565544322111 135666666 443
No 52
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=27.09 E-value=1.2e+02 Score=23.44 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=25.4
Q ss_pred hhhhHHhHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhh
Q 038536 176 WIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSVANA 214 (221)
Q Consensus 176 w~~~~~~~~~~~~i~~~~~~~~~~w~~~~~~~~~r~~~~ 214 (221)
|.+ .++..++..+++++.+++.-|.+-..-..+|-++.
T Consensus 9 ~~s-qifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I 46 (155)
T PRK06569 9 YYS-QIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNI 46 (155)
T ss_pred hhH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 446 67777777888778887777766655555555443
No 53
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=26.13 E-value=2.1e+02 Score=22.18 Aligned_cols=33 Identities=15% Similarity=0.105 Sum_probs=18.2
Q ss_pred HHhHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 038536 180 IQAGALLQTILLSIITSPFNHYKKVNVLSHSVA 212 (221)
Q Consensus 180 ~~~~~~~~~i~~~~~~~~~~w~~~~~~~~~r~~ 212 (221)
+++..++..+++++.+++.-|+.-.+-..+|-+
T Consensus 20 t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~ 52 (173)
T PRK13453 20 TVIVTVLTFIVLLALLKKFAWGPLKDVMDKRER 52 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666556444443444433
No 54
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=26.08 E-value=2.4e+02 Score=22.14 Aligned_cols=52 Identities=21% Similarity=0.155 Sum_probs=30.3
Q ss_pred hcCcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHHH
Q 038536 138 GCGWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTILL 191 (221)
Q Consensus 138 g~G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~~ 191 (221)
.-.++..+-.+.+++..++.+..+++....++ .+.|.|.| ..-+.+.=+++.
T Consensus 62 ~wk~t~~G~~igi~~~gv~Si~aAllY~~~l~-k~~g~W~G-i~YG~~~W~ivF 113 (173)
T PF11085_consen 62 DWKNTWLGNLIGIVFIGVFSIVAALLYYALLK-KFKGPWPG-ILYGLAWWAIVF 113 (173)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchH-HHHHHHHHHHHH
Confidence 34556666666766666666655544433332 67888888 665555544443
No 55
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=25.97 E-value=1.3e+02 Score=23.29 Aligned_cols=41 Identities=10% Similarity=0.104 Sum_probs=22.4
Q ss_pred CccchhhhhhHHhHHHHHHHHHHHHHhhcChHHHHHHHHHHh
Q 038536 170 SRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSV 211 (221)
Q Consensus 170 ~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~w~~~~~~~~~r~ 211 (221)
+....++.+ .++..++..+++++.+++.-|+.-.+-..+|-
T Consensus 9 ~~~l~~~~~-~~~~~~i~Flil~~iL~~~~~kpi~~~l~~R~ 49 (173)
T PRK13460 9 LSLLDVNPG-LVVWTLVTFLVVVLVLKKFAWDVILKALDERA 49 (173)
T ss_pred CCccCCcHh-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444556 56666666677666666666644433333333
No 56
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=25.56 E-value=1e+02 Score=24.77 Aligned_cols=36 Identities=6% Similarity=-0.084 Sum_probs=22.4
Q ss_pred hhhhHHhHHHHHHHHHHHHHhhcChHHHHHHHHHHhh
Q 038536 176 WIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSVA 212 (221)
Q Consensus 176 w~~~~~~~~~~~~i~~~~~~~~~~w~~~~~~~~~r~~ 212 (221)
|.+ .++..++..+++++.+.+.-|....+-..+|.+
T Consensus 52 ~~~-~l~w~~I~FliL~~lL~k~~~~pI~~vLe~R~~ 87 (204)
T PRK09174 52 YAS-QLLWLAITFGLFYLFMSRVILPRIGGIIETRRD 87 (204)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445 666777777777777777777554444444444
No 57
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.55 E-value=3.7e+02 Score=24.66 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=16.7
Q ss_pred cchhhhhhHHhHHHHHHHHHHHHHhhcChHHHH
Q 038536 172 GPGIWIGGIQAGALLQTILLSIITSPFNHYKKV 204 (221)
Q Consensus 172 ~~Giw~~~~~~~~~~~~i~~~~~~~~~~w~~~~ 204 (221)
....|.-+..+..++...+++...++..+..+.
T Consensus 412 ~l~~~~l~~~i~~~i~~~~~~~~~~~~~~~~~k 444 (461)
T KOG3098|consen 412 LLYIYTLGLPIFCVIATTIFFIVAERTQAMEKK 444 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333442215555666666666555555444443
No 58
>PF05745 CRPA: Chlamydia 15 kDa cysteine-rich outer membrane protein (CRPA); InterPro: IPR008436 Chlamydia is a genus of bacteria, which causes the most common bacterial sexually transmitted diseases. They are obligate intracellular bacterial pathogens. Members of this genus lack a peptidoglycan layer, but as a substitute, it has been proposed that they have several cysteine rich membrane proteins. This includes the major outer membrane protein (MOMP). These form disulphide bonds to provide rigidity to the cell wall. The alignment of the amino acid sequences of the MOMP from various serovars of Chlamydia show that they have between seven and ten cysteine residues; seven of which are highly conserved []. The MOMP has been the focus of efforts to produce a vaccine for Chlamydia trachomatis []. The 15 kDa cysteine-rich protein in this entry is a multi-pass outer membrane protein. They are associated with the differentiation of reticulate bodies (RBs) into elementary bodies (EBs) []. They immunolocalise to the inclusion membrane, which is the membrane that surrounds the intracellular parasite. These proteins are recognised by CD8+ T cells in both human and mouse infections, suggesting they gain access to the host cytoplasm.; GO: 0019867 outer membrane
Probab=22.57 E-value=3.4e+02 Score=20.38 Aligned_cols=58 Identities=14% Similarity=0.015 Sum_probs=30.6
Q ss_pred HHHHHHHhhcCccchhhhhhHHhHHHHHHHHHHHHHhhcChHHHHHHHHHHhhhhhccc
Q 038536 160 VAAALGFWLKSRGPGIWIGGIQAGALLQTILLSIITSPFNHYKKVNVLSHSVANATSDI 218 (221)
Q Consensus 160 ~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~w~~~~~~~~~r~~~~~~~~ 218 (221)
++..|.+.-..|....|+. ++.-..+--++...............+..+|.-....||
T Consensus 80 l~l~fil~~~lg~naf~~~-IPAviGlvkll~ts~~m~~~Cs~EKw~lck~~l~t~EDi 137 (150)
T PF05745_consen 80 LALTFILHSQLGNNAFLFI-IPAVIGLVKLLITSLCMEESCSPEKWKLCKRWLGTLEDI 137 (150)
T ss_pred HHHHhhehhhhcCccchhh-HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3455555667889999988 886655544444444433322222333334443333333
No 59
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=22.08 E-value=3.9e+02 Score=20.90 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=35.2
Q ss_pred HHHHHHhc-CCCchhHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHcc
Q 038536 46 FLTILSGL-LPNPKLETSVLSVCLATISNLF-TIPDGLGTAASNRVSN 91 (221)
Q Consensus 46 ~~~~~~~~-lg~~~~~~Aa~~i~~~v~~~~~-~~~~gl~~a~~~~ig~ 91 (221)
...++++. +| +.+++.|+++.++..... .+..+++....+.++|
T Consensus 205 ~~~~li~~~l~--~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 205 IDRLLIGYFLG--PEAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred HHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44566666 76 678999999999999877 8889999888887764
No 60
>PRK00523 hypothetical protein; Provisional
Probab=20.31 E-value=1.9e+02 Score=19.30 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=14.3
Q ss_pred chhhhhhHHhHHHHHHHHHHHHHhhcChHHHH
Q 038536 173 PGIWIGGIQAGALLQTILLSIITSPFNHYKKV 204 (221)
Q Consensus 173 ~Giw~~~~~~~~~~~~i~~~~~~~~~~w~~~~ 204 (221)
.|+|+. ..+--++.+++..+++-+..-+|..
T Consensus 4 ~~l~I~-l~i~~li~G~~~Gffiark~~~k~l 34 (72)
T PRK00523 4 IGLALG-LGIPLLIVGGIIGYFVSKKMFKKQI 34 (72)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666 4444444444444444333334433
Done!