Query 038536
Match_columns 221
No_of_seqs 127 out of 1307
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 21:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038536.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038536hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 99.8 2.2E-21 7.5E-26 171.2 8.5 153 44-199 258-447 (460)
2 3mkt_A Multi antimicrobial ext 99.5 2.9E-13 1E-17 119.0 13.6 176 14-198 7-217 (460)
3 2iub_A CORA, divalent cation t 21.3 51 0.0017 27.6 2.5 50 147-200 305-362 (363)
4 2qjy_A Cytochrome B; cytochrom 18.9 4.6E+02 0.016 22.7 9.0 78 111-190 91-170 (445)
5 3cx5_C Cytochrome B-C1 complex 15.5 5.1E+02 0.018 21.9 7.5 78 111-190 76-155 (385)
6 2knc_B Integrin beta-3; transm 15.5 2.4E+02 0.0083 18.0 4.8 22 173-195 11-32 (79)
7 1pd3_A Nonstructural protein N 14.1 96 0.0033 18.4 1.8 18 196-213 3-20 (58)
8 1vf5_A Cytochrome B6; photosyn 12.5 4.5E+02 0.015 20.3 5.8 77 112-190 81-159 (215)
9 1ydi_B Alpha-actinin 4; cell a 12.1 1E+02 0.0036 15.4 1.3 22 199-220 2-23 (26)
10 2kdu_B MUNC13-1, protein UNC-1 10.3 1.5E+02 0.005 16.2 1.6 20 197-216 5-24 (36)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.84 E-value=2.2e-21 Score=171.16 Aligned_cols=153 Identities=21% Similarity=0.290 Sum_probs=139.7
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--CCCCHHHHHHHHhH----------------
Q 038536 44 HNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN--GAGNSETAHIAVRV---------------- 105 (221)
Q Consensus 44 ~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~--Ga~~~~~a~~~~~~---------------- 105 (221)
+.+++.+++++| +.++|+|+++.++.++.+++..|++++..+.+|+ |+||+|++|+..+.
T Consensus 258 ~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (460)
T 3mkt_A 258 FAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLT 335 (460)
T ss_dssp HHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778889998 5789999999999999999999999999999999 99999999988776
Q ss_pred --------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHHh----
Q 038536 106 --------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQDFGAYVYLAASYLCGIPVAAALGFW---- 167 (221)
Q Consensus 106 --------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~~~~~~~~~~~~~~i~ip~~~~~~~~---- 167 (221)
+|+.+.+..++++.++..++++++.+..++++|.||+|.++..++++.|++++|+.+++.+.
T Consensus 336 ~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~ 415 (460)
T 3mkt_A 336 VLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLT 415 (460)
T ss_dssp HHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 57788899999999999999999999999999999999999999999999999999999876
Q ss_pred hc-CccchhhhhhHHhHHHHHHHHHHHHHhhcC
Q 038536 168 LK-SRGPGIWIGGIQAGALLQTILLSIITSPFN 199 (221)
Q Consensus 168 ~~-~g~~Giw~~~~~~~~~~~~i~~~~~~~~~~ 199 (221)
++ +|..|+|++ +.+++.+..++..+++++..
T Consensus 416 ~~~~G~~G~~~a-~~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 416 EQPLGAKGFWLG-FIIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp CCSSHHHHHHHH-HHHHHHHHHHHHHSSSSSSC
T ss_pred ccccCchhHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 66 999999999 99999999988877766543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.49 E-value=2.9e-13 Score=119.03 Aligned_cols=176 Identities=15% Similarity=0.126 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHhHHhHHHHhhhhHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcc--
Q 038536 14 ISEEAGEFSMWLVPASSVIQLFNHLFDYFKHNFLTILSGLLPNPKLETSVLSVCLATISNLFTIPDGLGTAASNRVSN-- 91 (221)
Q Consensus 14 ~~~~a~~y~~~~~p~l~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~~Aa~~i~~~v~~~~~~~~~gl~~a~~~~ig~-- 91 (221)
..+..++.++..+|....+ ....+..+ +++.+++++| ++++++++++.++..+...+..|++.+..+.+++
T Consensus 7 ~~~~~k~~~~~~~p~~~~~-~~~~~~~~----v~~~~~~~lg--~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~ 79 (460)
T 3mkt_A 7 YKKEASNLIKLATPVLIAS-VAQTGMGF----VDTIMAGGVS--AIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLN 79 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHTHHHHT--TTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888999988876 44444444 6678888898 5679999999999999899999999999999999
Q ss_pred CCCCHHHHHHHHhH-----------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 038536 92 GAGNSETAHIAVRV-----------------------------KEVVDHGTTMAPLVCLLVILESLKCVLSGVARGCGWQ 142 (221)
Q Consensus 92 Ga~~~~~a~~~~~~-----------------------------~~v~~~~~~~l~i~~~~~~~~~~~~v~~gilrg~G~~ 142 (221)
|++|++++++..+. +++.+.+..++++.....++.....+.++++||.||+
T Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~ 159 (460)
T 3mkt_A 80 GAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLT 159 (460)
T ss_dssp SSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCC
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999988766 7778889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHh-h---cCccchhhhhhHHhHHHHHHHHHHHHHhhc
Q 038536 143 DFGAYVYLAASYLCGIPVAAALGFW-L---KSRGPGIWIGGIQAGALLQTILLSIITSPF 198 (221)
Q Consensus 143 ~~~~~~~~~~~~~i~ip~~~~~~~~-~---~~g~~Giw~~~~~~~~~~~~i~~~~~~~~~ 198 (221)
+.++..++++. ++.+++.+++.+. + ++|+.|..++ +.+++.+..++..+++++.
T Consensus 160 ~~~~~~~~~~~-~~~i~l~~~li~~~~~~p~~g~~g~a~a-~~i~~~~~~~~~~~~~~~~ 217 (460)
T 3mkt_A 160 KPAMVIGFIGL-LLNIPLNWIFVYGKFGAPELGGVGCGVA-TAIVYWIMLLLLLFYIVTS 217 (460)
T ss_dssp TTTHHHHHHHH-HHHHHHHHHHHSCCTTCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHcCCCCCcccchhhHHHH-HHHHHHHHHHHHHHHHHhC
Confidence 99999999987 4678888888764 3 7999999999 9999999999887777654
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=21.29 E-value=51 Score=27.56 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=22.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHh-hcCc-------cchhhhhhHHhHHHHHHHHHHHHHhhcCh
Q 038536 147 YVYLAASYLCGIPVAAALGFW-LKSR-------GPGIWIGGIQAGALLQTILLSIITSPFNH 200 (221)
Q Consensus 147 ~~~~~~~~~i~ip~~~~~~~~-~~~g-------~~Giw~~~~~~~~~~~~i~~~~~~~~~~w 200 (221)
.+++++. +.+|+.++.+++ .+++ ..|.|+. ++..++.+++.+++++|.+|
T Consensus 305 ~LTiit~--IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~--l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 305 VLTIIAT--IFMPLTFIAGIYGMNFEYMPELRWKWGYPVV--LAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHH--HHHHHHHHTTSCC--------------CHHH--HHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHH--HHHHHHHHHhhhcccCCCCCcccCcHHHHHH--HHHHHHHHHHHHHHHHHccc
Confidence 4444443 336776666542 1111 1233433 33344455566677788888
No 4
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=18.87 E-value=4.6e+02 Score=22.71 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=47.4
Q ss_pred HHHhHHHHHHHHHHHHHHH-HHHHHHHhhcCc-chhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHH
Q 038536 111 HGTTMAPLVCLLVILESLK-CVLSGVARGCGW-QDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQT 188 (221)
Q Consensus 111 ~~~~~l~i~~~~~~~~~~~-~v~~gilrg~G~-~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~ 188 (221)
...++++..+.+.++.++. -+..+++.|.-+ ++......-+..++. .-...+.++.+.||-.+.|.+ +++.+.+++
T Consensus 91 wliR~~H~~gAs~ffi~iylHi~RglyygsY~~Pr~~~W~~Gv~l~ll-~m~taF~GYvLPwgQmSfWga-tVITnLlsa 168 (445)
T 2qjy_A 91 FMLRYLHANGASLFFIAVYLHIFRGLYYGSYKAPREVTWIVGMLIYLA-MMATAFMGYVLPWGQMSFWGA-TVITGLFGA 168 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH-HHHHHHHHHHTTCBHHHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccceeeehHHHHHH-HHHHHHHheeccCCccchHHH-HHHHHHHHH
Confidence 3445555555555544443 344666666554 344444433333222 223466788899999999999 999998887
Q ss_pred HH
Q 038536 189 IL 190 (221)
Q Consensus 189 i~ 190 (221)
+=
T Consensus 169 IP 170 (445)
T 2qjy_A 169 IP 170 (445)
T ss_dssp ST
T ss_pred hh
Confidence 64
No 5
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=15.51 E-value=5.1e+02 Score=21.88 Aligned_cols=78 Identities=10% Similarity=-0.006 Sum_probs=46.3
Q ss_pred HHHhHHHHHHHHHHHHHHH-HHHHHHHhhcCc-chhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHH
Q 038536 111 HGTTMAPLVCLLVILESLK-CVLSGVARGCGW-QDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQT 188 (221)
Q Consensus 111 ~~~~~l~i~~~~~~~~~~~-~v~~gilrg~G~-~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~ 188 (221)
...++++..+.+..+.++. -+..++..|.-+ ++......-+...+. .-...+.++.+.||-.+.|.+ +++.+.+++
T Consensus 76 wliR~~H~~gAs~ffi~iylHi~Rglyygsy~~Pr~~~W~~Gv~l~ll-~m~~aF~GYvLPwgQmS~Wga-tViTnLlsa 153 (385)
T 3cx5_C 76 YILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFIL-TIATAFLGYCCVYGQMSHWGA-TVITNLFSA 153 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH-HHHHHHHHHHHHCBHHHHHHH-HHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeecHHHHHH-HHHHHHHhhhccCCcchhHHH-HHHHHHHHH
Confidence 3445555555555544443 334666666554 344444333333222 223466778889999999999 999988777
Q ss_pred HH
Q 038536 189 IL 190 (221)
Q Consensus 189 i~ 190 (221)
+=
T Consensus 154 IP 155 (385)
T 3cx5_C 154 IP 155 (385)
T ss_dssp ST
T ss_pred hh
Confidence 53
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=15.51 E-value=2.4e+02 Score=18.02 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=10.3
Q ss_pred chhhhhhHHhHHHHHHHHHHHHH
Q 038536 173 PGIWIGGIQAGALLQTILLSIIT 195 (221)
Q Consensus 173 ~Giw~~~~~~~~~~~~i~~~~~~ 195 (221)
.++-.| .+.+-++.+++.+..+
T Consensus 11 ~~Iv~g-vi~gilliGllllliw 32 (79)
T 2knc_B 11 LVVLLS-VMGAILLIGLAALLIW 32 (79)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hhhHHH-HHHHHHHHHHHHHHHH
Confidence 334445 5555555555444333
No 7
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=14.09 E-value=96 Score=18.37 Aligned_cols=18 Identities=0% Similarity=-0.184 Sum_probs=12.5
Q ss_pred hhcChHHHHHHHHHHhhh
Q 038536 196 SPFNHYKKVNVLSHSVAN 213 (221)
Q Consensus 196 ~~~~w~~~~~~~~~r~~~ 213 (221)
++.+|+++..+..+.+++
T Consensus 3 rn~kwReqL~qKFEeIRw 20 (58)
T 1pd3_A 3 RNGKWREQLGQKFEEIRW 20 (58)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 567899888887777763
No 8
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=12.48 E-value=4.5e+02 Score=20.27 Aligned_cols=77 Identities=9% Similarity=-0.060 Sum_probs=43.7
Q ss_pred HHhHHHHHHHHHHHHHHH-HHHHHHHhhcCcc-hhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHH
Q 038536 112 GTTMAPLVCLLVILESLK-CVLSGVARGCGWQ-DFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTI 189 (221)
Q Consensus 112 ~~~~l~i~~~~~~~~~~~-~v~~gilrg~G~~-~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i 189 (221)
..++++..+.+.++.++. -+..++..|.-+. +......-+...+. .-...+.++.+.||-.+.|.+ +++.+.++++
T Consensus 81 liR~~H~~gAs~ffi~~ylHi~Rglyygsy~~p~~~~W~~Gv~l~~l-~m~~aF~GYvLPwgqmS~wga-tVitnl~sai 158 (215)
T 1vf5_A 81 LIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWISGVILAVI-TVSFGVTGYSLPWDQVGYWAV-KIVSGVPEAI 158 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSCSHHHHHHHHHHHH-HHHHHHHHTTTTCBHHHHHHH-HHHHSGGGSS
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHhhhcccCCCceeHhHHHHHHH-HHHHHHcccccCCCccchhhH-HHHHhhhccC
Confidence 344555555555444433 2445666655543 32232222222222 223466778899999999999 8888877765
Q ss_pred H
Q 038536 190 L 190 (221)
Q Consensus 190 ~ 190 (221)
-
T Consensus 159 P 159 (215)
T 1vf5_A 159 P 159 (215)
T ss_dssp T
T ss_pred C
Confidence 3
No 9
>1ydi_B Alpha-actinin 4; cell adhesion, structural protein; 1.80A {Homo sapiens}
Probab=12.05 E-value=1e+02 Score=15.39 Aligned_cols=22 Identities=9% Similarity=0.277 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHHhhhhhccccC
Q 038536 199 NHYKKVNVLSHSVANATSDILK 220 (221)
Q Consensus 199 ~w~~~~~~~~~r~~~~~~~~~~ 220 (221)
.|++-...+.+...|-++.||.
T Consensus 2 ~WeqL~t~~~r~~neiEnqIla 23 (26)
T 1ydi_B 2 GWEQLLTTIARTINEVENQILT 23 (26)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 5887777777777777777763
No 10
>2kdu_B MUNC13-1, protein UNC-13 homolog A; calmodulin, calcium, acetylation, methylation, alternative splicing, cell junction, cell membrane, coiled coil; NMR {Xenopus laevis}
Probab=10.28 E-value=1.5e+02 Score=16.15 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=14.9
Q ss_pred hcChHHHHHHHHHHhhhhhc
Q 038536 197 PFNHYKKVNVLSHSVANATS 216 (221)
Q Consensus 197 ~~~w~~~~~~~~~r~~~~~~ 216 (221)
+.+|.+..+|.+..++|...
T Consensus 5 k~~Wlra~nKVR~qlqe~~~ 24 (36)
T 2kdu_B 5 KANWLRAFNKVRMQLQEARG 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcccC
Confidence 34688888888888886653
Done!