Query 038536
Match_columns 221
No_of_seqs 127 out of 1307
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 21:02:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038536.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038536hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2csba3 a.60.2.4 (A:410-464) T 41.1 3.1 0.00023 22.6 0.3 22 1-22 15-36 (55)
2 d3cx5c2 f.21.1.2 (C:1-261) Mit 14.0 2.2E+02 0.016 20.8 6.5 76 113-190 78-155 (261)
3 d1v54m_ f.23.7.1 (M:) Mitochon 7.1 1.4E+02 0.0099 15.6 2.0 10 157-166 27-36 (43)
4 d1q90b_ f.21.1.2 (B:) Cytochro 7.1 3.8E+02 0.028 18.7 6.3 58 130-189 97-155 (212)
5 d1ppjc2 f.21.1.2 (C:15-260) Mi 6.6 4.2E+02 0.031 18.8 6.3 29 160-189 111-139 (246)
6 d1vega_ a.5.2.1 (A:) NEDD8 ult 6.0 1.6E+02 0.012 17.4 2.2 16 5-20 36-51 (83)
7 d1pd3a_ a.30.3.1 (A:) Nonstruc 5.8 1.5E+02 0.011 15.7 1.8 14 199-212 2-15 (54)
8 d1l8ya_ a.21.1.1 (A:) Nucleola 5.4 1.8E+02 0.013 16.9 2.2 20 199-218 51-70 (84)
9 d1vola1 a.74.1.2 (A:113-207) T 5.3 3.1E+02 0.023 15.9 3.5 24 2-25 10-33 (95)
10 d2ivxa2 a.74.1.1 (A:150-262) C 5.0 2.7E+02 0.02 17.3 3.1 20 4-23 10-29 (113)
No 1
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=41.10 E-value=3.1 Score=22.63 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=18.2
Q ss_pred ChhhhhhcCCChHHHHHHHHHH
Q 038536 1 MGKILIFMGQYPQISEEAGEFS 22 (221)
Q Consensus 1 ~~~il~~~g~~~~~~~~a~~y~ 22 (221)
++.+|+.+|-++.+-++|++|-
T Consensus 15 aerllrafgnpervkqlarefe 36 (55)
T d2csba3 15 AERLLRAFGNPERVKQLAREFE 36 (55)
T ss_dssp HHHHHHHHSSHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 4678999999999988888763
No 2
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.03 E-value=2.2e+02 Score=20.76 Aligned_cols=76 Identities=11% Similarity=0.026 Sum_probs=44.3
Q ss_pred HhHHHHHHHHHHHH-HHHHHHHHHHhhcCc-chhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHHH
Q 038536 113 TTMAPLVCLLVILE-SLKCVLSGVARGCGW-QDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTIL 190 (221)
Q Consensus 113 ~~~l~i~~~~~~~~-~~~~v~~gilrg~G~-~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i~ 190 (221)
.+.++..+....+. ...-+..+++.|.-+ +|......-+-..++ +....+.++.+.||-.+.|.+ .++.+..+.+=
T Consensus 78 iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l-~~~~af~GY~Lpw~q~s~w~~-~Vit~l~~~iP 155 (261)
T d3cx5c2 78 LRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFIL-TIATAFLGYCCVYGQMSHWGA-TVITNLFSAIP 155 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH-HHHHHHHHHHHHCBHHHHHHH-HHHHHGGGGST
T ss_pred hhhcccccHHHHHHHHHHHHHHHHHhccccCccchhHHhhHHHHHH-HHHHHHhhhhcCCCcchhhHH-HHHHHHHHhcC
Confidence 34444443333333 334455666666665 444444443333332 334456677889999999999 89888776654
No 3
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.13 E-value=1.4e+02 Score=15.59 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=7.5
Q ss_pred HHHHHHHHHH
Q 038536 157 GIPVAAALGF 166 (221)
Q Consensus 157 ~ip~~~~~~~ 166 (221)
-.|.+|+++.
T Consensus 27 L~PaGwVLsh 36 (43)
T d1v54m_ 27 LLPAGWVLYH 36 (43)
T ss_dssp HHHHHHHHHT
T ss_pred HccHHHHHHH
Confidence 4788888874
No 4
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.09 E-value=3.8e+02 Score=18.70 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=35.9
Q ss_pred HHHHHHHhhc-CcchhHHHHHHHHHHHhHHHHHHHHHHhhcCccchhhhhhHHhHHHHHHH
Q 038536 130 CVLSGVARGC-GWQDFGAYVYLAASYLCGIPVAAALGFWLKSRGPGIWIGGIQAGALLQTI 189 (221)
Q Consensus 130 ~v~~gilrg~-G~~~~~~~~~~~~~~~i~ip~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i 189 (221)
-+..+.+.|. .++|....+.-+...++ .....+.++.+.+|-.+.|.+ .+..+..+.+
T Consensus 97 Hm~r~~~~gsyk~pre~~W~~Gv~l~~l-~m~~aftGY~Lpw~q~sywa~-~V~~~l~~~i 155 (212)
T d1q90b_ 97 HVFRVYLTGGFKRPRELTWVTGVIMAVC-TVSFGVTGYSLPWDQVGYWAV-KIVTGVPDAI 155 (212)
T ss_dssp HHHHHHTTTTTSSSCHHHHHHHHHHHHH-HHHHHHHHHHTTCBHHHHHHH-HHHHHGGGGS
T ss_pred HHHHHHHcCcccCcccceehHhHHHHHH-HHHHHHhhhhcchhhHHHHHH-HHHHHHHHHH
Confidence 3444555554 44454544444444333 334456678899999999999 8888776554
No 5
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.59 E-value=4.2e+02 Score=18.79 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=23.3
Q ss_pred HHHHHHHhhcCccchhhhhhHHhHHHHHHH
Q 038536 160 VAAALGFWLKSRGPGIWIGGIQAGALLQTI 189 (221)
Q Consensus 160 ~~~~~~~~~~~g~~Giw~~~~~~~~~~~~i 189 (221)
...+.++.+.||-.+.|.+ .++.++.+.+
T Consensus 111 ~~af~GY~Lpw~qms~wa~-~V~t~l~~~i 139 (246)
T d1ppjc2 111 ATAFMGYVLPWGQMSFWGA-TVITNLLSAI 139 (246)
T ss_dssp HHHHHHHHTTCBHHHHHHH-HHHHGGGGGS
T ss_pred HHHHeeccCCCcchhHHHH-HHHHHHHHHH
Confidence 4466778899999999999 8888877543
No 6
>d1vega_ a.5.2.1 (A:) NEDD8 ultimate buster-1 (Nub1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.04 E-value=1.6e+02 Score=17.41 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=11.9
Q ss_pred hhhcCCChHHHHHHHH
Q 038536 5 LIFMGQYPQISEEAGE 20 (221)
Q Consensus 5 l~~~g~~~~~~~~a~~ 20 (221)
|.+||-+++.++.|-+
T Consensus 36 LvYMGF~~~~Ae~ALR 51 (83)
T d1vega_ 36 LVYMGFDTVVAEAALR 51 (83)
T ss_dssp HHHHSCCHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHH
Confidence 6778888888877654
No 7
>d1pd3a_ a.30.3.1 (A:) Nonstructural protein ns2, Nep, M1-binding domain {Influenza A virus [TaxId: 11320]}
Probab=5.78 E-value=1.5e+02 Score=15.72 Aligned_cols=14 Identities=0% Similarity=-0.002 Sum_probs=9.3
Q ss_pred ChHHHHHHHHHHhh
Q 038536 199 NHYKKVNVLSHSVA 212 (221)
Q Consensus 199 ~w~~~~~~~~~r~~ 212 (221)
+|+.+..+..+.++
T Consensus 2 kwreqlsqkfeeir 15 (54)
T d1pd3a_ 2 KWREQLGQKFEEIR 15 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 57777766666665
No 8
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.43 E-value=1.8e+02 Score=16.91 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=13.0
Q ss_pred ChHHHHHHHHHHhhhhhccc
Q 038536 199 NHYKKVNVLSHSVANATSDI 218 (221)
Q Consensus 199 ~w~~~~~~~~~r~~~~~~~~ 218 (221)
.|.|++.+-++|-+.+..+.
T Consensus 51 ~wikkaaedqkryerel~em 70 (84)
T d1l8ya_ 51 MWIKKAAEDQKRYERELSEM 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 47777777777776554443
No 9
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.27 E-value=3.1e+02 Score=15.85 Aligned_cols=24 Identities=0% Similarity=-0.180 Sum_probs=16.9
Q ss_pred hhhhhhcCCChHHHHHHHHHHHHH
Q 038536 2 GKILIFMGQYPQISEEAGEFSMWL 25 (221)
Q Consensus 2 ~~il~~~g~~~~~~~~a~~y~~~~ 25 (221)
+++...+|.++.+.+.|..+.+-+
T Consensus 10 ~~~~~~L~L~~~i~~~A~~i~~~~ 33 (95)
T d1vola1 10 TTMADRINLPRNKVDRTNNLFRQA 33 (95)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHH
Confidence 356677788888888887776543
No 10
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.96 E-value=2.7e+02 Score=17.27 Aligned_cols=20 Identities=0% Similarity=-0.042 Sum_probs=10.8
Q ss_pred hhhhcCCChHHHHHHHHHHH
Q 038536 4 ILIFMGQYPQISEEAGEFSM 23 (221)
Q Consensus 4 il~~~g~~~~~~~~a~~y~~ 23 (221)
.+..++.++++++.|..|+.
T Consensus 10 ~~k~l~~~~~l~q~AW~~ln 29 (113)
T d2ivxa2 10 CTQLVRASKDLAQTSYFMAT 29 (113)
T ss_dssp HHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhCCChHHHHHHHHHHH
Confidence 34455556666655555543
Done!