BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038537
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 106/236 (44%), Gaps = 28/236 (11%)
Query: 93 SCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCS 152
S + + E ++ TGS D TV+ W V +++ + H V + N +G + TCS
Sbjct: 175 SVLCLQYDERVIITGSSDSTVRVWDV--NTGEMLNTLIHHCEAVLHLRFN--NGMMVTCS 230
Query: 153 SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212
D S+ +W + TL L +++VN + FD+ ++ S S D +I W
Sbjct: 231 KDRSIAVWD-MASPTDITLRRVLVGHRAAVNVVD----FDDKYIVSASGDRTIKVWN--- 282
Query: 213 MSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRG 272
+ L GH + CL ++L+ SGS D TIR+W G CL VL+GH
Sbjct: 283 -TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA----CLRVLEGHEE 337
Query: 273 PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEK---TMCLDYSDYHS 325
VRC+ + +++V G + D KVW + D T+CL HS
Sbjct: 338 LVRCI--RFDNKRIVSG------AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS 385
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 123/313 (39%), Gaps = 58/313 (18%)
Query: 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDN 61
+ +G I++W + + + G V + + ++ T + D +R+W+ +
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEM 205
Query: 62 FRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDK 121
NT H C + + G++ T S D+++ W +
Sbjct: 206 L--------------------NTLIHH--CEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 243
Query: 122 R-CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHT--LTMTLKFQ 178
T V H + VN VV+ DD ++ + S D ++K+W N+ T TL
Sbjct: 244 TDITLRRVLVGHRAAVN--VVDFDDKYIVSASGDRTIKVW------NTSTCEFVRTLNGH 295
Query: 179 QSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEK 238
+ + L + + + SGSSD +I W D G L+GH V C+ K
Sbjct: 296 KRGIACLQ----YRDRLVVSGSSDNTIRLW--DIECGACLR--VLEGHEELVRCIRFDNK 347
Query: 239 LIFSGSEDTTIRVW-------RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFL 291
I SG+ D I+VW RA G CL L H G V L+ ++ F
Sbjct: 348 RIVSGAYDGKIKVWDLVAALDPRAPAGTL--CLRTLVEHSGRV----FRLQFDE----FQ 397
Query: 292 VYSSSLDQTFKVW 304
+ SSS D T +W
Sbjct: 398 IVSSSHDDTILIW 410
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 191 FDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIR 250
+D+ + SG D +I W+K+ + L GH +VLCL E++I +GS D+T+R
Sbjct: 141 YDDQKIVSGLRDNTIKIWDKNTLECK----RILTGHTGSVLCLQYDERVIITGSSDSTVR 196
Query: 251 VWRRAEG----GCYHECLAVL 267
VW G H C AVL
Sbjct: 197 VWDVNTGEMLNTLIHHCEAVL 217
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/258 (23%), Positives = 98/258 (37%), Gaps = 38/258 (14%)
Query: 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDN-MLFTTNKDCKIRIWNFTVS 59
++ TGSS + +RVW + E H E L +N M+ T +KD I +W+
Sbjct: 185 VIITGSSDSTVRVW-DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 243
Query: 60 DNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVL 119
+ ++V HR V+ + F + + + S D+T+K W
Sbjct: 244 TDITLRRVLV-----------------GHRAAVNVVDF--DDKYIVSASGDRTIKVWNT- 283
Query: 120 DKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ 179
C V + H+ + + D V + SSD ++++W L+ +
Sbjct: 284 -STCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIRLW----DIECGACLRVLEGHE 336
Query: 180 SSVNALALSSFFDNYFLYSGSSDGSINFWE-----KDKMSGGFNHGGFLQGHCFAVLCLV 234
V + FDN + SG+ DG I W+ + G L H V L
Sbjct: 337 ELVRCIR----FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ 392
Query: 235 AIEKLIFSGSEDTTIRVW 252
E I S S D TI +W
Sbjct: 393 FDEFQIVSSSHDDTILIW 410
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 82/203 (40%), Gaps = 40/203 (19%)
Query: 133 ESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFD 192
E++ + DD + + D ++KIW + E LT SV L +D
Sbjct: 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT----GHTGSVLCLQ----YD 182
Query: 193 NYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG---HCFAVLCLVAIEKLIFSGSEDTTI 249
+ +GSSD ++ W+ N G L HC AVL L ++ + S+D +I
Sbjct: 183 ERVIITGSSDSTVRVWD-------VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSI 235
Query: 250 RVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGF---LVYSSSLDQTFKVWR- 305
VW A VL GHR V V+ F + S+S D+T KVW
Sbjct: 236 AVWDMASPTDI-TLRRVLVGHRAAVN-----------VVDFDDKYIVSASGDRTIKVWNT 283
Query: 306 -----VKVMPDQEKTM-CLDYSD 322
V+ + ++ + CL Y D
Sbjct: 284 STCEFVRTLNGHKRGIACLQYRD 306
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 28/219 (12%)
Query: 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGF 147
H V +AF + + S DKTVK W ++ + + H S+VN + D
Sbjct: 220 HSSSVRGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVNGVAFRPDGQT 276
Query: 148 VFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINF 207
+ + S D +VK+W R + L TL SSV +A S D + S S D ++
Sbjct: 277 IASASDDKTVKLWNRNGQ-----LLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKL 329
Query: 208 WEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLA 265
W ++ H L GH +V + + I S S+D T+++W R + L
Sbjct: 330 WNRNGQ-----HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-----NGQLLQ 379
Query: 266 VLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
L GH VR +A S + G + S+S D+T K+W
Sbjct: 380 TLTGHSSSVRGVAFSPD------GQTIASASDDKTVKLW 412
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 118/291 (40%), Gaps = 57/291 (19%)
Query: 21 ERGFIKARHGEVRAI-LAHDNMLFTTNKDCK-IRIWNFTVSDNFRTKKVTTLPRRSSFLS 78
ER ++A VR + + D + D K +++WN R L
Sbjct: 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN----------------RNGQLL- 50
Query: 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNA 138
T H V +AF + + S DKTVK W ++ + + H S+V
Sbjct: 51 ----QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVRG 103
Query: 139 IVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYS 198
+ + D + + S D +VK+W R + L TL SSV +A S D + S
Sbjct: 104 VAFSPDGQTIASASDDKTVKLWNRNGQ-----LLQTLTGHSSSVWGVAFSP--DGQTIAS 156
Query: 199 GSSDGSINFWEKDKMSGGFNHGGFLQ---GHCFAV--LCLVAIEKLIFSGSEDTTIRVWR 253
S D ++ W ++ G LQ GH +V + + I S S+D T+++W
Sbjct: 157 ASDDKTVKLWNRN--------GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 208
Query: 254 RAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
R + L L GH VR +A S + G + S+S D+T K+W
Sbjct: 209 R-----NGQLLQTLTGHSSSVRGVAFSPD------GQTIASASDDKTVKLW 248
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 34/222 (15%)
Query: 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGF 147
H V +AF + + S DKTVK W ++ + + H S+V + + DD
Sbjct: 384 HSSSVRGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPDDQT 440
Query: 148 VFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINF 207
+ + S D +VK+W R + L TL SSV +A S D + S S D ++
Sbjct: 441 IASASDDKTVKLWNRNGQ-----LLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKL 493
Query: 208 WEKDKMSGGFNHGGFLQ---GHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHE 262
W ++ G LQ GH +V + + I S S+D T+++W R +
Sbjct: 494 WNRN--------GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-----NGQ 540
Query: 263 CLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
L L GH V +A S + G + S+S D+T K+W
Sbjct: 541 LLQTLTGHSSSVWGVAFSPD------GQTIASASSDKTVKLW 576
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 98/222 (44%), Gaps = 34/222 (15%)
Query: 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGF 147
H V +AF + + S DKTVK W ++ + + H S+V + + D
Sbjct: 343 HSSSVWGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVRGVAFSPDGQT 399
Query: 148 VFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINF 207
+ + S D +VK+W R + L TL SSV +A S D+ + S S D ++
Sbjct: 400 IASASDDKTVKLWNRNGQ-----LLQTLTGHSSSVWGVAFSP--DDQTIASASDDKTVKL 452
Query: 208 WEKDKMSGGFNHGGFLQ---GHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHE 262
W ++ G LQ GH +V + + I S S+D T+++W R +
Sbjct: 453 WNRN--------GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-----NGQ 499
Query: 263 CLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
L L GH VR +A S + G + S+S D+T K+W
Sbjct: 500 LLQTLTGHSSSVRGVAFSPD------GQTIASASDDKTVKLW 535
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 34/235 (14%)
Query: 75 SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHES 134
S + + N + H V +AF + + S DKTVK W ++ + + H S
Sbjct: 2 SHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSS 58
Query: 135 NVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNY 194
+V + + D + + S D +VK+W R + L TL SSV +A S D
Sbjct: 59 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-----LLQTLTGHSSSVRGVAFSP--DGQ 111
Query: 195 FLYSGSSDGSINFWEKDKMSGGFNHGGFLQ---GHCFAV--LCLVAIEKLIFSGSEDTTI 249
+ S S D ++ W ++ G LQ GH +V + + I S S+D T+
Sbjct: 112 TIASASDDKTVKLWNRN--------GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 163
Query: 250 RVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
++W R + L L GH V +A S + G + S+S D+T K+W
Sbjct: 164 KLWNR-----NGQLLQTLTGHSSSVWGVAFSPD------GQTIASASDDKTVKLW 207
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 96/222 (43%), Gaps = 34/222 (15%)
Query: 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGF 147
H V +AF + + S DKTVK W ++ + + H S+V + + D
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVRGVAFSPDGQT 235
Query: 148 VFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINF 207
+ + S D +VK+W R + L TL SSVN +A D + S S D ++
Sbjct: 236 IASASDDKTVKLWNRNGQ-----LLQTLTGHSSSVNGVAFRP--DGQTIASASDDKTVKL 288
Query: 208 WEKDKMSGGFNHGGFLQ---GHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHE 262
W ++ G LQ GH +V + + I S S+D T+++W R +
Sbjct: 289 WNRN--------GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-----NGQ 335
Query: 263 CLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
L L GH V +A S + G + S+S D+T K+W
Sbjct: 336 HLQTLTGHSSSVWGVAFSPD------GQTIASASDDKTVKLW 371
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 134/335 (40%), Gaps = 64/335 (19%)
Query: 17 PDCVERGFIKARHGEVRAILAHD--NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74
P E+ + V ++ H +++ + ++D I++W++ D RT K T +
Sbjct: 96 PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 155
Query: 75 ----------------------SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKT 112
F F T H VS ++ + + S DKT
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 215
Query: 113 VKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW-------RRVYR 165
+K W V + CV +F H V + NQD + +CS+D +V++W + R
Sbjct: 216 IKMWEV--QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 273
Query: 166 ENSHTLTMTLKFQQSSVNALALSSFFDNY-------FLYSGSSDGSINFWEKDKMSGGF- 217
E+ H + +SS ++++ ++ + FL SGS D +I W+ +S G
Sbjct: 274 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD---VSTGMC 330
Query: 218 -----NHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRG 272
H +++G F + K I S ++D T+RVW C+ L+ H
Sbjct: 331 LMTLVGHDNWVRGVLFH-----SGGKFILSCADDKTLRVWDYKN----KRCMKTLNAHEH 381
Query: 273 PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
SL+ K V + S+DQT KVW +
Sbjct: 382 ----FVTSLDFHKTAP--YVVTGSVDQTVKVWECR 410
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 104/225 (46%), Gaps = 17/225 (7%)
Query: 96 AFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF--VAHESNVNAIVVNQDDGFVFTCSS 153
+F ++G+L TGS D+ +K V T +D AH+ + ++ + S
Sbjct: 19 SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78
Query: 154 DGSVKIWRR---VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEK 210
D +V IW + R L ++ ++ V +A S+ D Y+L + S D S+ WE
Sbjct: 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN--DGYYLATCSRDKSVWIWET 136
Query: 211 DKMSGGFNHGGFLQGHCFAVLCLV--AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLD 268
D+ + LQ H V ++ E L+ S S D T+R+W+ + EC+AVL+
Sbjct: 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW--ECVAVLN 194
Query: 269 GHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQE 313
GH G V S + +K F + S S D T +VW K M D E
Sbjct: 195 GHEGTVW----SSDFDKTEGVFRLCSGSDDSTVRVW--KYMGDDE 233
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 27/172 (15%)
Query: 1 MVFTGSSSTRIRVWRQPDCVERGF-------IKARHGEVRAILAHDN--MLFTTNKDCKI 51
++ GS + + +W + + +R F I+ EV+ + ++ L T ++D +
Sbjct: 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131
Query: 52 RIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDK 111
IW S + + Q+H V + ++ +E LL + S+D
Sbjct: 132 WIWETDESGE----------------EYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 112 TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS--DGSVKIWR 161
TV+ W+ D CV HE V + ++ +G CS D +V++W+
Sbjct: 176 TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 36/267 (13%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 139
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 140 QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 198 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 252
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 253 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTA 308
Query: 279 ASLEMEKVVMGFLVYSSSLDQTFKVWR 305
E ++ + + D+T K+W+
Sbjct: 309 CH-PTENIIASAALEN---DKTIKLWK 331
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 82 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 139
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 140 QSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 193
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 194 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 242 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQ 289
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW + T+ + ++ +A
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAW 95
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 96 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G +CL L H PV + + + G L+ SSS D ++W
Sbjct: 150 DESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 198
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 36/267 (13%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 141
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 142 QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 199
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 200 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 254
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 255 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTA 310
Query: 279 ASLEMEKVVMGFLVYSSSLDQTFKVWR 305
E ++ + + D+T K+W+
Sbjct: 311 CH-PTENIIASAALEN---DKTIKLWK 333
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 84 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 141
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 142 QSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 195
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 196 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 244 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQ 291
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW + T+ + ++ +A
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAW 97
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 98 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 151
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G +CL L H PV + + + G L+ SSS D ++W
Sbjct: 152 DESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 200
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 36/267 (13%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 120
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 121 QSNLIVSGSFDESVRIWDV--KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 179 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQT----KEIVQKLQGHTDVVISTA 289
Query: 279 ASLEMEKVVMGFLVYSSSLDQTFKVWR 305
E ++ + + D+T K+W+
Sbjct: 290 CH-PTENIIASAALEN---DKTIKLWK 312
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 120
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 121 QSNLIVSGSFDESVRIWDV----KTGMCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 174
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 175 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 223 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNMVYIWNLQ 270
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW + T+ + ++ +A
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAW 76
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 77 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G CL L H PV + + + G L+ SSS D ++W
Sbjct: 131 DESVRIWDVKTG----MCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 179
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 36/267 (13%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 123
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 124 QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 182 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTA 292
Query: 279 ASLEMEKVVMGFLVYSSSLDQTFKVWR 305
E ++ + + D+T K+W+
Sbjct: 293 CH-PTENIIASAALEN---DKTIKLWK 315
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 123
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 124 QSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 177
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 178 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 226 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQ 273
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW T+ + ++ +A
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDVAW 79
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 80 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G +CL L H PV + + + G L+ SSS D ++W
Sbjct: 134 DESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 182
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 36/267 (13%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 117
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 118 QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 176 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTA 286
Query: 279 ASLEMEKVVMGFLVYSSSLDQTFKVWR 305
E ++ + + D+T K+W+
Sbjct: 287 CH-PTENIIASAALEN---DKTIKLWK 309
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 117
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 118 QSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 171
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 172 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 220 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQ 267
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW + T+ + ++ +A
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAW 73
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 74 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G +CL L H PV + + + G L+ SSS D ++W
Sbjct: 128 DESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 176
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 36/267 (13%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 123
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 124 QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 182 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTA 292
Query: 279 ASLEMEKVVMGFLVYSSSLDQTFKVWR 305
E ++ + + D+T K+W+
Sbjct: 293 CH-PTENIIASAALEN---DKTIKLWK 315
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 123
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 124 QSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 177
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 178 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 226 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQ 273
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW + T+ + ++ +A
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAW 79
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 80 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G +CL L H PV + + + G L+ SSS D ++W
Sbjct: 134 DESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 182
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 36/267 (13%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 134
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 135 QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 192
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 193 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 247
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 248 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTA 303
Query: 279 ASLEMEKVVMGFLVYSSSLDQTFKVWR 305
E ++ + + D+T K+W+
Sbjct: 304 CH-PTENIIASAALEN---DKTIKLWK 326
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 77 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 134
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 135 QSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 188
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 189 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 237 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQ 284
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW T+ + ++ +A
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDVAW 90
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 91 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 144
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G +CL L H PV + + + G L+ SSS D ++W
Sbjct: 145 DESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 193
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 36/267 (13%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 117
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 118 QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 176 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTA 286
Query: 279 ASLEMEKVVMGFLVYSSSLDQTFKVWR 305
E ++ + + D+T K+W+
Sbjct: 287 CH-PTENIIASAALEN---DKTIKLWK 309
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 60 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 117
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 118 QSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 171
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 172 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 220 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQ 267
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW + T+ + ++ +A
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAW 73
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 74 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 127
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G +CL L H PV + + + G L+ SSS D ++W
Sbjct: 128 DESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 176
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 36/267 (13%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 116
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 117 QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 175 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 229
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 230 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTA 285
Query: 279 ASLEMEKVVMGFLVYSSSLDQTFKVWR 305
E ++ + + D+T K+W+
Sbjct: 286 CH-PTENIIASAALEN---DKTIKLWK 308
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 59 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 116
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 117 QSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 170
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 171 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 219 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQ 266
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW + T+ + ++ +A
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAW 72
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 73 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 126
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G +CL L H PV + + + G L+ SSS D ++W
Sbjct: 127 DESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 175
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 36/267 (13%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 123
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 124 QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 182 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTA 292
Query: 279 ASLEMEKVVMGFLVYSSSLDQTFKVWR 305
E ++ + + D+T K+W+
Sbjct: 293 CH-PTENIIASAALEN---DKTIKLWK 315
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 66 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 123
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 124 QSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 177
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 178 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 226 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQ 273
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW + T+ + ++ +A
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAW 79
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 80 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 133
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G +CL L H PV + + + G L+ SSS D ++W
Sbjct: 134 DESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 182
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 36/267 (13%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 113
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 114 QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 171
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 172 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 226
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 227 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTA 282
Query: 279 ASLEMEKVVMGFLVYSSSLDQTFKVWR 305
E ++ + + D+T K+W+
Sbjct: 283 CH-PTENIIASAALEN---DKTIKLWK 305
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 56 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 113
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 114 QSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 167
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 168 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 216 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQ 263
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW T+ + ++ +A
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDVAW 69
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 70 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 123
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G +CL L H PV + + + G L+ SSS D ++W
Sbjct: 124 DESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 172
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 36/267 (13%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 118
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 119 QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 176
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 177 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 231
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 232 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTA 287
Query: 279 ASLEMEKVVMGFLVYSSSLDQTFKVWR 305
E ++ + + D+T K+W+
Sbjct: 288 CH-PTENIIASAALEN---DKTIKLWK 310
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 61 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 118
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 119 QSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 172
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 173 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 221 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQ 268
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW + T+ + ++ +A
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAW 74
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 75 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 128
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G +CL L H PV + + + G L+ SSS D ++W
Sbjct: 129 DESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 177
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 36/267 (13%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 122
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 123 QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 181 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 235
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 236 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTA 291
Query: 279 ASLEMEKVVMGFLVYSSSLDQTFKVWR 305
E ++ + + D+T K+W+
Sbjct: 292 CH-PTENIIASAALEN---DKTIKLWK 314
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 65 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 122
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 123 QSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 176
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 177 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 225 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQ 272
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW + T+ + ++ +A
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAW 78
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 79 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 132
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G +CL L H PV + + + G L+ SSS D ++W
Sbjct: 133 DESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 181
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 107/267 (40%), Gaps = 36/267 (13%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 120
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 121 QSNLIVSGSFDESVRIWDV--KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D + W+ K +
Sbjct: 179 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNDLKLWDYSKGKCLKTY 233
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQT----KEIVQKLQGHTDVVISTA 289
Query: 279 ASLEMEKVVMGFLVYSSSLDQTFKVWR 305
E ++ + + D+T K+W+
Sbjct: 290 CH-PTENIIASAALEN---DKTIKLWK 312
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 120
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 121 QSNLIVSGSFDESVRIWDV----KTGMCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 174
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D +++W
Sbjct: 175 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 223 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNMVYIWNLQ 270
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW + T+ + ++ +A
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK----FEKTISGHKLGISDVAW 76
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 77 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G CL L H PV + + + G L+ SSS D ++W
Sbjct: 131 DESVRIWDVKTG----MCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 179
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 107/275 (38%), Gaps = 52/275 (18%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 120
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 121 QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 179 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRG------ 272
G + +C V K I SGSED + +W E + L GH
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTA 289
Query: 273 --PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305
P + AS +E D+T K+W+
Sbjct: 290 CHPTENIIASAALEN------------DKTIKLWK 312
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 120
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 121 QSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 174
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 175 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 223 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQ 270
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 78/198 (39%), Gaps = 41/198 (20%)
Query: 140 VVNQDDGFVFTC-----------SSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALS 188
V+ D V TC S D ++K+W V + TL + S
Sbjct: 113 VLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-------GHTGGVWSS 165
Query: 189 SFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTT 248
DN + SGS+D ++ W + +G H L GH V C+ EK + SGS D T
Sbjct: 166 QMRDNIII-SGSTDRTLKVWNAE--TGECIH--TLYGHTSTVRCMHLHEKRVVSGSRDAT 220
Query: 249 IRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308
+RVW G C H VL GH VRC+ G V S + D KVW
Sbjct: 221 LRVWDIETGQCLH----VLMGHVAAVRCVQYD--------GRRVVSGAYDFMVKVW---- 264
Query: 309 MPDQEKTMCLDYSDYHSN 326
D E CL H+N
Sbjct: 265 --DPETETCLHTLQGHTN 280
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 116/283 (40%), Gaps = 42/283 (14%)
Query: 28 RHGEVRA---ILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNT 84
R GE+++ + HD+ + T + C RI + + + + T + + +
Sbjct: 104 RRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 163
Query: 85 QQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD 144
Q RD ++ +GS D+T+K W + C+ + H S V + +++
Sbjct: 164 SSQMRD-----------NIIISGSTDRTLKVWNA--ETGECIHTLYGHTSTVRCMHLHEK 210
Query: 145 DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGS 204
V + S D ++++W + H L + A +D + SG+ D
Sbjct: 211 R--VVSGSRDATLRVWDIETGQCLHVLMGHV--------AAVRCVQYDGRRVVSGAYDFM 260
Query: 205 INFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECL 264
+ W+ + + LQGH V L + SGS DT+IRVW G C H
Sbjct: 261 VKVWDPETETCLHT----LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIH--- 313
Query: 265 AVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
L GH+ L + +E++ ++ S + D T K+W +K
Sbjct: 314 -TLTGHQS----LTSGMELKDNIL----VSGNADSTVKIWDIK 347
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 114/280 (40%), Gaps = 47/280 (16%)
Query: 1 MVFTGSSSTRIRVWRQP--DCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTV 58
++ +GS+ ++VW +C+ + VR + H+ + + ++D +R+W+
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLY--GHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 228
Query: 59 SDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRV 118
+ H V C+ + + +G++D VK W
Sbjct: 229 GQCL--------------------HVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWDP 266
Query: 119 LDKRCTCVDSFVAHESNVNAIVVNQDDGF-VFTCSSDGSVKIWRRVYRENSHTLTMTLKF 177
+ TC+ + H + V ++ Q DG V + S D S+++W HTLT
Sbjct: 267 ETE--TCLHTLQGHTNRVYSL---QFDGIHVVSGSLDTSIRVWDVETGNCIHTLT----G 317
Query: 178 QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG---HCFAVLCLV 234
QS + + L DN L SG++D ++ W D +G LQG H AV CL
Sbjct: 318 HQSLTSGMELK---DN-ILVSGNADSTVKIW--DIKTGQCLQ--TLQGPNKHQSAVTCLQ 369
Query: 235 AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPV 274
+ + + S+D T+++W G + + G G V
Sbjct: 370 FNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 409
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 104/262 (39%), Gaps = 42/262 (16%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 120
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 121 QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 179 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTA 289
Query: 279 ----------ASLEMEKVVMGF 290
A+LE +K + F
Sbjct: 290 CHPTENIIASAALENDKTIKLF 311
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 120
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 121 QSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 174
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 175 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 223 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQ 270
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW T+ + ++ +A
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDVAW 76
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 77 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G +CL L H PV + + + G L+ SSS D ++W
Sbjct: 131 DESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 179
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 103/259 (39%), Gaps = 42/259 (16%)
Query: 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99
N+L + + D ++IW+ + +T K H + V C F
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLK--------------------GHSNYVFCCNFNP 120
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
L+ +GSFD++V+ W V K C+ + AH V+A+ N+D + + S DG +I
Sbjct: 121 QSNLIVSGSFDESVRIWDV--KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219
W + TL + V+ + S + ++ + + D ++ W+ K +
Sbjct: 179 WDTASGQCLKTL---IDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 220 GGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLA 278
G + +C V K I SGSED + +W E + L GH V A
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT----KEIVQKLQGHTDVVISTA 289
Query: 279 ----------ASLEMEKVV 287
A+LE +K +
Sbjct: 290 CHPTENIIASAALENDKTI 308
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 88/235 (37%), Gaps = 38/235 (16%)
Query: 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143
T H+ +S +A+ LL + S DKT+K W V + C+ + H + V N
Sbjct: 63 TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNP 120
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + S D SV+IW + TL V+A+ + D + S S DG
Sbjct: 121 QSNLIVSGSFDESVRIWDV----KTGKCLKTLPAHSDPVSAVHFNR--DGSLIVSSSYDG 174
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLC-----------LVAIEKLIFSGSEDTTIRVW 252
W+ G C L K I + + D T+++W
Sbjct: 175 LCRIWDT------------ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
++G +CL GH+ C+ A+ V G + S S D +W ++
Sbjct: 223 DYSKG----KCLKTYTGHKNEKYCIFANFS---VTGGKWIVSGSEDNLVYIWNLQ 270
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 22/179 (12%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
+ H V+++ + + ++ + S+D +KIW T+ + ++ +A
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY----DGKFEKTISGHKLGISDVAW 76
Query: 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSE 245
SS D+ L S S D ++ W D SG L+GH V C LI SGS
Sbjct: 77 SS--DSNLLVSASDDKTLKIW--DVSSGKCLK--TLKGHSNYVFCCNFNPQSNLIVSGSF 130
Query: 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
D ++R+W G +CL L H PV + + + G L+ SSS D ++W
Sbjct: 131 DESVRIWDVKTG----KCLKTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIW 179
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 103/236 (43%), Gaps = 38/236 (16%)
Query: 91 CVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFT 150
++C+ F + + TG+ DK ++ + ++K+ H+ V A+ G + +
Sbjct: 124 VITCLQF--EDNYVITGADDKMIRVYDSINKKFLL--QLSGHDGGVWALKYAHG-GILVS 178
Query: 151 CSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEK 210
S+D +V++W T + S+V L + + + ++ +GS D +++ W+
Sbjct: 179 GSTDRTVRVWDI----KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 211 DKMSGGFNHG-------------------GFLQGHCFAVLCLVAIEKLIFSGSEDTTIRV 251
K S +HG G L+GH +V + ++ SGS D T+ V
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 252 WRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
W A+ +CL +L GH + E ++ + S+S+D T ++W ++
Sbjct: 295 WDVAQ----MKCLYILSGHTDRIYSTIYDHERKRCI------SASMDTTIRIWDLE 340
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 100/241 (41%), Gaps = 48/241 (19%)
Query: 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNA--IVVNQDD 145
H V + + H G+L +GS D+TV+ W + K+ C F H S V IV ++
Sbjct: 161 HDGGVWALKYAHG-GILVSGSTDRTVRVWDI--KKGCCTHVFEGHNSTVRCLDIVEYKNI 217
Query: 146 GFVFTCSSDGSVKIWRRVYRENS--------------HT------LTMTLKFQQSSVNAL 185
++ T S D ++ +W+ + +E+S HT L+ +SV +
Sbjct: 218 KYIVTGSRDNTLHVWK-LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 186 ALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE--KLIFSG 243
+ + SGS D ++ W+ +M + L GH + + K S
Sbjct: 277 S----GHGNIVVSGSYDNTLIVWDVAQMKCLY----ILSGHTDRIYSTIYDHERKRCISA 328
Query: 244 SEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303
S DTTIR+W G E + L GH V L S + FLV S++ D + +
Sbjct: 329 SMDTTIRIWDLENG----ELMYTLQGHTALVGLLRLSDK-------FLV-SAAADGSIRG 376
Query: 304 W 304
W
Sbjct: 377 W 377
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 74/189 (39%), Gaps = 42/189 (22%)
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+D +V T + D + RVY + + L V AL + L SGS+D
Sbjct: 131 EDNYVITGADDKMI----RVYDSINKKFLLQLSGHDGGVWAL---KYAHGGILVSGSTDR 183
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE----KLIFSGSEDTTIRVWRRA---- 255
++ W+ K G H +GH V CL +E K I +GS D T+ VW+
Sbjct: 184 TVRVWDIKK--GCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239
Query: 256 --EGGCYHEC-------------LAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQT 300
+ G H+ + VL GH VR ++ G +V S S D T
Sbjct: 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH--------GNIVVSGSYDNT 291
Query: 301 FKVWRVKVM 309
VW V M
Sbjct: 292 LIVWDVAQM 300
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 113/266 (42%), Gaps = 48/266 (18%)
Query: 1 MVFTGSSSTRIRVWR-QPDCVERGFIKARHGEVRA--ILAHDNM--LFTTNKDCKIRIWN 55
++ +GS+ +RVW + C F + + VR I+ + N+ + T ++D + +W
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 56 FTVSDNFRTKKVTTLPRRSSFLSFSKSN-------TQQQHRDCVSCMAFYHAE------- 101
LP+ SS + + T +++ V + + A
Sbjct: 234 --------------LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 279
Query: 102 -GLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW 160
++ +GS+D T+ W V +C + S H + + + + + + S D +++IW
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQMKCLYILS--GHTDRIYSTIYDHERKRCISASMDTTIRIW 337
Query: 161 RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG 220
EN L TL+ + V L LS + FL S ++DGSI W+ + S F+
Sbjct: 338 DL---ENGE-LMYTLQGHTALVGLLRLS----DKFLVSAAADGSIRGWDANDYSRKFS-- 387
Query: 221 GFLQGHCFAVLCLVAIEKLIFSGSED 246
+ + A+ + ++ SGSE+
Sbjct: 388 -YHHTNLSAITTFYVSDNILVSGSEN 412
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 30/165 (18%)
Query: 167 NSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGH 226
NS L ++ K+ + S SF +N F+ W K L+GH
Sbjct: 72 NSLNLKLSQKYPKLSQQDRLRLSFLENIFILKN--------WYNPKF---VPQRTTLRGH 120
Query: 227 CFAVL-CLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEK 285
+V+ CL + + +G++D IRV+ + L L GH G V L K
Sbjct: 121 MTSVITCLQFEDNYVITGADDKMIRVYDSIN----KKFLLQLSGHDGGVWAL-------K 169
Query: 286 VVMGFLVYSSSLDQTFKVWRVK------VMPDQEKTM-CLDYSDY 323
G ++ S S D+T +VW +K V T+ CLD +Y
Sbjct: 170 YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 214
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 102/236 (43%), Gaps = 38/236 (16%)
Query: 91 CVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFT 150
++C+ F + + TG+ DK ++ + ++K+ H+ V A+ G + +
Sbjct: 124 VITCLQF--EDNYVITGADDKXIRVYDSINKKFLL--QLSGHDGGVWALKYAHG-GILVS 178
Query: 151 CSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEK 210
S+D +V++W T + S+V L + + + ++ +GS D +++ W+
Sbjct: 179 GSTDRTVRVWDI----KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 211 DKMSGGFNHG-------------------GFLQGHCFAVLCLVAIEKLIFSGSEDTTIRV 251
K S +HG G L+GH +V + ++ SGS D T+ V
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIV 294
Query: 252 WRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
W A+ +CL +L GH + E ++ + S+S D T ++W ++
Sbjct: 295 WDVAQ----XKCLYILSGHTDRIYSTIYDHERKRCI------SASXDTTIRIWDLE 340
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 118/296 (39%), Gaps = 69/296 (23%)
Query: 2 VFTGSSSTRIRVWRQPDCVERGFI---KARHGEVRAI-LAHDNMLFTTNKDCKIRIW--- 54
V TG+ IRV+ D + + F+ G V A+ AH +L + + D +R+W
Sbjct: 135 VITGADDKXIRVY---DSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIK 191
Query: 55 -----------NFTVS------------------DNFRTKKVTTLPRRSSFLSFSKSN-- 83
N TV DN T V LP+ SS + +
Sbjct: 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN--TLHVWKLPKESSVPDHGEEHDY 249
Query: 84 -----TQQQHRDCVSCMAFYHAE--------GLLYTGSFDKTVKAWRVLDKRCTCVDSFV 130
T +++ V + + A ++ +GS+D T+ W V +C + S
Sbjct: 250 PLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILS-- 307
Query: 131 AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSF 190
H + + + + + + S D +++IW EN L TL+ + V L LS
Sbjct: 308 GHTDRIYSTIYDHERKRCISASXDTTIRIWDL---ENGE-LXYTLQGHTALVGLLRLS-- 361
Query: 191 FDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSED 246
+ FL S ++DGSI W+ + S F+ + + A+ + ++ SGSE+
Sbjct: 362 --DKFLVSAAADGSIRGWDANDYSRKFS---YHHTNLSAITTFYVSDNILVSGSEN 412
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 88/225 (39%), Gaps = 49/225 (21%)
Query: 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+D +V T + D + RVY + + L V AL + L SGS+D
Sbjct: 131 EDNYVITGADDKXI----RVYDSINKKFLLQLSGHDGGVWAL---KYAHGGILVSGSTDR 183
Query: 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE----KLIFSGSEDTTIRVWRRA---- 255
++ W+ K G H +GH V CL +E K I +GS D T+ VW+
Sbjct: 184 TVRVWDIKK--GCCTH--VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239
Query: 256 --EGGCYHEC-------------LAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQT 300
+ G H+ + VL GH VR ++ G +V S S D T
Sbjct: 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGH--------GNIVVSGSYDNT 291
Query: 301 FKVWRVKVMPDQEKTMCLDYSDYHSNSKTTTTKMDYEMSPVLSPS 345
VW D + CL H++ + +T D+E +S S
Sbjct: 292 LIVW------DVAQXKCLYILSGHTD-RIYSTIYDHERKRCISAS 329
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 48/241 (19%)
Query: 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNA--IVVNQDD 145
H V + + H G+L +GS D+TV+ W + K+ C F H S V IV ++
Sbjct: 161 HDGGVWALKYAHG-GILVSGSTDRTVRVWDI--KKGCCTHVFEGHNSTVRCLDIVEYKNI 217
Query: 146 GFVFTCSSDGSVKIWRRVYRENS--------------HT------LTMTLKFQQSSVNAL 185
++ T S D ++ +W+ + +E+S HT L+ +SV +
Sbjct: 218 KYIVTGSRDNTLHVWK-LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 186 ALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE--KLIFSG 243
+ + SGS D ++ W+ + + L GH + + K S
Sbjct: 277 S----GHGNIVVSGSYDNTLIVWDVAQXKCLY----ILSGHTDRIYSTIYDHERKRCISA 328
Query: 244 SEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303
S DTTIR+W G E L GH V L S + FLV S++ D + +
Sbjct: 329 SXDTTIRIWDLENG----ELXYTLQGHTALVGLLRLSDK-------FLV-SAAADGSIRG 376
Query: 304 W 304
W
Sbjct: 377 W 377
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 30/177 (16%)
Query: 167 NSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGH 226
NS L ++ K+ + S SF +N F+ W K L+GH
Sbjct: 72 NSLNLKLSQKYPKLSQQDRLRLSFLENIFILKN--------WYNPKF---VPQRTTLRGH 120
Query: 227 CFAVL-CLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEK 285
+V+ CL + + +G++D IRV+ + L L GH G V L K
Sbjct: 121 XTSVITCLQFEDNYVITGADDKXIRVYDSIN----KKFLLQLSGHDGGVWAL-------K 169
Query: 286 VVMGFLVYSSSLDQTFKVWRVK------VMPDQEKTM-CLDYSDYHSNSKTTTTKMD 335
G ++ S S D+T +VW +K V T+ CLD +Y + T D
Sbjct: 170 YAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 226
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 85/224 (37%), Gaps = 40/224 (17%)
Query: 41 MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA 100
+L + D +IRIW T D++ K V + + H+ V +A+
Sbjct: 30 LLASCGGDRRIRIWG-TEGDSWICKSVLS----------------EGHQRTVRKVAWSPC 72
Query: 101 EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW 160
L + SFD T W+ CV + HE+ V ++ + TCS D SV +W
Sbjct: 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Query: 161 RRVYRE--------NSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212
+ NSHT + S LA +S+ D LY D +
Sbjct: 133 EVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCC----- 187
Query: 213 MSGGFNHGGFLQGHCFAVLCLV--AIEKLIFSGSEDTTIRVWRR 254
L+GH V L + + S S+D T+R+WR+
Sbjct: 188 --------ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ 223
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 104/257 (40%), Gaps = 43/257 (16%)
Query: 25 IKARHGEVRAIL--AHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82
++ EV+++ N+L T ++D + +W D + +S S
Sbjct: 101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC------------VSVLNS 148
Query: 83 NTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVN 142
+TQ V + ++ ++ LL + S+D TVK +R + C + HES V ++ +
Sbjct: 149 HTQD-----VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 203
Query: 143 QDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLY----- 197
+ +CS D +V+IWR+ N + + S + S F + +Y
Sbjct: 204 PSGQRLASCSDDRTVRIWRQYLPGNEQGVACS--GSDPSWKCICTLSGFHSRTIYDIAWC 261
Query: 198 -------SGSSDGSINFWEKDKMSGG----FNHGGFL-QGHCFAVLCLVAIEK---LIFS 242
+ D +I +++D S F+ L Q H V C+ K L+ S
Sbjct: 262 QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321
Query: 243 GSEDTTIRVWR--RAEG 257
S+D + W+ R EG
Sbjct: 322 CSDDGEVAFWKYQRPEG 338
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 240 IFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQ 299
+ S S D T +W++ + EC+ L+GH V+ +A + G L+ + S D+
Sbjct: 76 LASASFDATTCIWKKNQDD--FECVTTLEGHENEVKSVAWAPS------GNLLATCSRDK 127
Query: 300 TFKVWRVKVMPDQEKTMCLDYSDYHSN 326
+ VW V ++++ C+ + H+
Sbjct: 128 SVWVWEVD---EEDEYECVSVLNSHTQ 151
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 80/180 (44%), Gaps = 15/180 (8%)
Query: 131 AHESNVNAIVVNQDDG-FVFTCSSDGSVKIWRRVYRENSHTLTMT-LKFQQSSVNALALS 188
AH V AI D+ + + S D S+ +W+ + ++ + L V + LS
Sbjct: 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS 439
Query: 189 SFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV--AIEKLIFSGSED 246
S D F SGS DG + W+ ++ G + F+ GH VL + + I S S D
Sbjct: 440 S--DGQFALSGSWDGELRLWD---LAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRD 493
Query: 247 TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306
TI++W G C + +GHR V C+ S + + S+S D+T KVW +
Sbjct: 494 RTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPN----TLQPTIVSASWDKTVKVWNL 548
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/248 (19%), Positives = 100/248 (40%), Gaps = 35/248 (14%)
Query: 19 CVERGFIKARHGEVRAI---LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75
V +G ++A V AI + + +++ + ++D I +W T D K RR +
Sbjct: 372 LVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDD----KAYGVAQRRLT 427
Query: 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESN 135
H V + +GS+D ++ W + T FV H +
Sbjct: 428 -----------GHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVST--RRFVGHTKD 474
Query: 136 VNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYF 195
V ++ + D+ + + S D ++K+W + E +T++ + + V+ + S
Sbjct: 475 VLSVAFSLDNRQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPT 533
Query: 196 LYSGSSDGSINFWE------KDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTI 249
+ S S D ++ W + ++G H G++ + + + L SG +D +
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAG---HTGYV-----STVAVSPDGSLCASGGKDGVV 585
Query: 250 RVWRRAEG 257
+W AEG
Sbjct: 586 LLWDLAEG 593
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 109/280 (38%), Gaps = 39/280 (13%)
Query: 28 RHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQ 85
R V+ I H + + TT ++ +WN+ R+ +VT P R+
Sbjct: 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAG---------- 61
Query: 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD 145
F + + GS D ++ + + VD F AH + +I V+
Sbjct: 62 ----------KFIARKNWIIVGSDDFRIRVFN-YNTGEKVVD-FEAHPDYIRSIAVHPTK 109
Query: 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSI 205
+V + S D +VK+W EN+ L T + + V +A + + F SG D ++
Sbjct: 110 PYVLSGSDDLTVKLWN---WENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRTV 165
Query: 206 NFWEKDKMSGGFN-HGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECL 264
W + + F G +G + + + + + S+D TI++W C+
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----KSCV 221
Query: 265 AVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
A L+GH V + ++ G S D T K+W
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISG------SEDGTLKIW 255
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 33/205 (16%)
Query: 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDN--MLFTTNKDCKIRIWN---- 55
+ GS RIRV+ + +A +R+I H + + + D +++WN
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 56 ------------FTVSDNFRTKKVTT-----LPRRSSFLSFSKSN-----TQQQHRDCVS 93
F + F K +T L R S +S T Q R V+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER-GVN 188
Query: 94 CMAFYHAEGLLY--TGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC 151
+ +Y Y T S D T+K W K +CV + H SNV+ V + + +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTK--SCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 152 SSDGSVKIWRRVYRENSHTLTMTLK 176
S DG++KIW + TL + L+
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNVGLE 271
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 109/280 (38%), Gaps = 39/280 (13%)
Query: 28 RHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQ 85
R V+ I H + + TT ++ +WN+ R+ +VT P R+
Sbjct: 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAG---------- 61
Query: 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD 145
F + + GS D ++ + + VD F AH + +I V+
Sbjct: 62 ----------KFIARKNWIIVGSDDFRIRVFN-YNTGEKVVD-FEAHPDYIRSIAVHPTK 109
Query: 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSI 205
+V + S D +VK+W EN+ L T + + V +A + + F SG D ++
Sbjct: 110 PYVLSGSDDLTVKLWN---WENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRTV 165
Query: 206 NFWEKDKMSGGFN-HGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECL 264
W + + F G +G + + + + + S+D TI++W C+
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----KSCV 221
Query: 265 AVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
A L+GH V + ++ G S D T K+W
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISG------SEDGTLKIW 255
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 33/205 (16%)
Query: 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDN--MLFTTNKDCKIRIWN---- 55
+ GS RIRV+ + +A +R+I H + + + D +++WN
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 56 ------------FTVSDNFRTKKVTT-----LPRRSSFLSFSKSN-----TQQQHRDCVS 93
F + F K +T L R S +S T Q R V+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER-GVN 188
Query: 94 CMAFYHAEGLLY--TGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC 151
+ +Y Y T S D T+K W K +CV + H SNV+ V + + +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTK--SCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 152 SSDGSVKIWRRVYRENSHTLTMTLK 176
S DG++KIW + TL + L+
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNVGLE 271
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 95/227 (41%), Gaps = 22/227 (9%)
Query: 85 QQQHRDCVSCMAF----YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIV 140
+Q H D + +A+ + TGS D VK W+ D+R S H+ V ++
Sbjct: 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVD 87
Query: 141 VNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS 200
++ + S D +++W EN + V+A L+ D+ +L +G+
Sbjct: 88 ISHTLPIAASSSLDAHIRLWD---LENGKQIK---SIDAGPVDAWTLAFSPDSQYLATGT 141
Query: 201 SDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCY 260
G +N + + SG + +G + K + SG+ D I ++ A G
Sbjct: 142 HVGKVNIFGVE--SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLL 199
Query: 261 HECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
H L+GH P+R L S + + L+ ++S D K++ V+
Sbjct: 200 H----TLEGHAMPIRSLTFSPDSQ------LLVTASDDGYIKIYDVQ 236
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 116/286 (40%), Gaps = 55/286 (19%)
Query: 42 LFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAE 101
L T +D IRIW+ +K+ + Q H + + ++ +
Sbjct: 138 LATGAEDRLIRIWDI------ENRKIVMI--------------LQGHEQDIYSLDYFPSG 177
Query: 102 GLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDG-FVFTCSSDGSVKIW 160
L +GS D+TV+ W + +C+ S E V + V+ DG ++ S D +V++W
Sbjct: 178 DKLVSGSGDRTVRIWDLRTGQCSLTLSI---EDGVTTVAVSPGDGKYIAAGSLDRAVRVW 234
Query: 161 RR-----VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWE----KD 211
V R +S + T + SV ++ + D + SGS D S+ W +
Sbjct: 235 DSETGFLVERLDSENESGT--GHKDSVYSVVFTR--DGQSVVSGSLDRSVKLWNLQNANN 290
Query: 212 KMSGGFNHGGFLQ----GHCFAVLCLVAIE--KLIFSGSEDTTIRVWRRAEGGCYHECLA 265
K + G + GH VL + + + I SGS+D + W + G L
Sbjct: 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG----NPLL 346
Query: 266 VLDGHRGPVRCLA----ASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
+L GHR V +A +SL E V + S D ++W+ K
Sbjct: 347 MLQGHRNSVISVAVANGSSLGPEYNVFA----TGSGDCKARIWKYK 388
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 106/259 (40%), Gaps = 55/259 (21%)
Query: 4 TGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHD-----NMLFTTNKDCKIRIWNF-- 56
TG+ IR+W D R + G + I + D + L + + D +RIW+
Sbjct: 140 TGAEDRLIRIW---DIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 57 -------TVSDNFRTKKVT----------TLPR-------RSSFLSF---SKSNTQQQHR 89
++ D T V+ +L R + FL S++ + H+
Sbjct: 197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 256
Query: 90 DCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR----------CTCVDSFVAHESNVNAI 139
D V + F + +GS D++VK W + + TC +++ H+ V ++
Sbjct: 257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 316
Query: 140 VVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL---SSFFDNYFL 196
Q+D ++ + S D V W + S + L+ ++SV ++A+ SS Y +
Sbjct: 317 ATTQNDEYILSGSKDRGVLFWDK----KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 372
Query: 197 YS-GSSDGSINFWEKDKMS 214
++ GS D W+ K++
Sbjct: 373 FATGSGDCKARIWKYKKIA 391
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 231 LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGF 290
+C K + +G+ED IR+W + + +L GH + L +K+V G
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIEN----RKIVMILQGHEQDIYSLDYFPSGDKLVSG- 183
Query: 291 LVYSSSLDQTFKVWRVK 307
S D+T ++W ++
Sbjct: 184 -----SGDRTVRIWDLR 195
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 107/280 (38%), Gaps = 39/280 (13%)
Query: 28 RHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQ 85
R V+ I H + + TT ++ +WN+ R+ +VT P R+
Sbjct: 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAG---------- 61
Query: 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD 145
F + + GS D ++ + V F AH + +I V+
Sbjct: 62 ----------KFIARKNWIIVGSDDFRIRVFNY--NTGEKVVDFEAHPDYIRSIAVHPTK 109
Query: 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSI 205
+V + S D +VK+W EN+ L T + + V +A + + F SG D ++
Sbjct: 110 PYVLSGSDDLTVKLWN---WENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRTV 165
Query: 206 NFWEKDKMSGGFN-HGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECL 264
W + + F G +G + + + + + S+D TI++W C+
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----KSCV 221
Query: 265 AVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
A L+GH V + ++ G S D T K+W
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISG------SEDGTLKIW 255
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 33/205 (16%)
Query: 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDN--MLFTTNKDCKIRIWN---- 55
+ GS RIRV+ + +A +R+I H + + + D +++WN
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 56 ------------FTVSDNFRTKKVTT-----LPRRSSFLSFSKSN-----TQQQHRDCVS 93
F + F K +T L R S +S T Q R V+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQER-GVN 188
Query: 94 CMAFYHAEGLLY--TGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC 151
+ +Y Y T S D T+K W K +CV + H SNV+ V + + +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTK--SCVATLEGHMSNVSFAVFHPTLPIIISG 246
Query: 152 SSDGSVKIWRRVYRENSHTLTMTLK 176
S DG++KIW + TL + L+
Sbjct: 247 SEDGTLKIWNSSTYKVEKTLNVGLE 271
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 26/140 (18%)
Query: 25 IKARHGEVR--AILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82
IKA EV A D + T + D K++IWN +
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELV-------------------- 698
Query: 83 NTQQQHRDCVSCMAFYHAEG--LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIV 140
+T +H + V+C F ++ LL TGS D +K W + K C ++ H ++VN
Sbjct: 699 HTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECR--NTMFGHTNSVNHCR 756
Query: 141 VNQDDGFVFTCSSDGSVKIW 160
+ DD + +CS+DG++K+W
Sbjct: 757 FSPDDKLLASCSADGTLKLW 776
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 131 AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSF 190
AHE V + DD F+ TCS D VKIW + E HT VN ++
Sbjct: 661 AHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDE----HSEQVNCCHFTNS 716
Query: 191 FDNYFLYSGSSDGSINFW---EKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDT 247
+ L +GSSD + W +K+ + F H + HC +KL+ S S D
Sbjct: 717 SHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSV-NHCR----FSPDDKLLASCSADG 771
Query: 248 TIRVW 252
T+++W
Sbjct: 772 TLKLW 776
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGF 147
H D V C AF + + T S DK VK W + V ++ H VN
Sbjct: 662 HEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGEL--VHTYDEHSEQVNCCHFTNSSHH 719
Query: 148 VF--TCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSI 205
+ T SSD +K+W +E +T+ +SVN S D+ L S S+DG++
Sbjct: 720 LLLATGSSDCFLKLWDLNQKECRNTMFG----HTNSVNHCRFSP--DDKLLASCSADGTL 773
Query: 206 NFWE 209
W+
Sbjct: 774 KLWD 777
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 16/159 (10%)
Query: 132 HESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFF 191
H+ V I D+ + + S D +++W + + L+ Q +V L
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDK-----CIFLRGHQETVKDFRL---L 1059
Query: 192 DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSG-SEDTTIR 250
N L S S DG++ W + G F+ + C ++ + FS S D T +
Sbjct: 1060 KNSRLLSWSFDGTVKVW---NIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAK 1116
Query: 251 VWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMG 289
+W HE L GH G VRC A S++ + G
Sbjct: 1117 IWSFDLLLPLHE----LRGHNGCVRCSAFSVDSTLLATG 1151
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 16/179 (8%)
Query: 87 QHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDG 146
QH+ V + F E L + S D ++ W +C + H+ V + ++
Sbjct: 1007 QHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLR---GHQETVKDFRLLKN-S 1062
Query: 147 FVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSIN 206
+ + S DG+VK+W + Q +V + +S D S S+D +
Sbjct: 1063 RLLSWSFDGTVKVWNIITGNKEKDFVC----HQGTVLSCDIS--HDATKFSSTSADKTAK 1116
Query: 207 FWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSEDTTIRVWRRAEGGCYHEC 263
W D + L+GH V C L+ +G ++ IR+W + G H C
Sbjct: 1117 IWSFDLLLPLHE----LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLC 1171
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 60/157 (38%), Gaps = 29/157 (18%)
Query: 21 ERGFIKARHGEVRAILAHDNMLFT-TNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79
E+ F+ + + ++HD F+ T+ D +IW+F + LP
Sbjct: 1084 EKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDL----------LLPLHE----- 1128
Query: 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRV----LDKRCTCV--DSFVAHE 133
+ H CV C AF LL TG + ++ W V L C + + H
Sbjct: 1129 -----LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHG 1183
Query: 134 SNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHT 170
V + + D + S+ G +K W V E+S T
Sbjct: 1184 GWVTDLCFSPDGKMLI--SAGGYIKWWNVVTGESSQT 1218
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 107/280 (38%), Gaps = 39/280 (13%)
Query: 28 RHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQ 85
R V+ I H + + TT ++ IWN+ R+ +VT P R+
Sbjct: 12 RSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAG---------- 61
Query: 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD 145
F + + GS D ++ + V F AH + +I V+
Sbjct: 62 ----------KFIARKNWIIVGSDDFRIRVFNY--NTGEKVVDFEAHPDYIRSIAVHPTK 109
Query: 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSI 205
+V + S D +VK+W EN+ L T + + V +A + + F SG D ++
Sbjct: 110 PYVLSGSDDLTVKLWN---WENNWALEQTFEGHEHFVMCVAFNPKDPSTFA-SGCLDRTV 165
Query: 206 NFWEKDKMSGGFN-HGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECL 264
W + + F G +G + + + + + S+D TI++W C+
Sbjct: 166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT----KSCV 221
Query: 265 AVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
A L+GH V + ++ G S D T K+W
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISG------SEDGTLKIW 255
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 86/244 (35%), Gaps = 69/244 (28%)
Query: 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRA--ILAHDNMLFTTNKDCKIRIWNFTVS 59
V T S R+ +W VE I+ VRA +A N + + D +IR++N+
Sbjct: 28 VLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 60 D---NFRT-----KKVTTLPRRSSFLSFSK---------------SNTQQQHRDCVSCMA 96
+ +F + + P + LS S T + H V C+A
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 97 FYHAEGLLY-TGSFDKTVKAW--------------------------------------- 116
F + + +G D+TVK W
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 117 ---RVLDKRC-TCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLT 172
++ D + +CV + H SNV+ V + + + S DG++KIW + TL
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Query: 173 MTLK 176
+ L+
Sbjct: 268 VGLE 271
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 110 DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSH 169
DK VKAW + + F+ H SN+N + + D + + DG + +W ++ +
Sbjct: 175 DKXVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXY 232
Query: 170 TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINF-----WEKDKMSGGF-NHGGFL 223
TL+ Q V +LA S + Y+L + ++ G F + D + F +
Sbjct: 233 TLSA-----QDEVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAA 285
Query: 224 QGHCFAVLCLVAIEKLIFSGSEDTTIRVWR 253
+ H + L A + +F+G D IRVW+
Sbjct: 286 EPHAVS-LAWSADGQTLFAGYTDNVIRVWQ 314
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 19 CVERGFIKARHGEVRAIL---AHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75
V RG ++ +G V ++ N+L + ++D + W T D V + S
Sbjct: 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESN 135
+ +DC +A + S+DKT++ W V FV H+S+
Sbjct: 67 IV-----------QDCTLTADGAYA----LSASWDKTLRLWDV--ATGETYQRFVGHKSD 109
Query: 136 VNAIVVNQDDGFVFTCSSDGSVKIW 160
V ++ +++ + + S D ++K+W
Sbjct: 110 VXSVDIDKKASXIISGSRDKTIKVW 134
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 18/147 (12%)
Query: 192 DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEK---LIFSGSEDTT 248
D + S S D ++ W+ ++ G + F+ GH V V I+K I SGS D T
Sbjct: 76 DGAYALSASWDKTLRLWD---VATGETYQRFV-GHKSDVXS-VDIDKKASXIISGSRDKT 130
Query: 249 IRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308
I+VW +CLA L GH V + + + S+ D+ K W +
Sbjct: 131 IKVWT-----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL-- 183
Query: 309 MPDQEKTMCLDYSDYHSNSKTTTTKMD 335
+ + D+ ++SN T T D
Sbjct: 184 ---NQFQIEADFIGHNSNINTLTASPD 207
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 26/140 (18%)
Query: 25 IKARHGEVR--AILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82
IKA EV A + D+ + T + D K++IW+ T K+
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA------TGKLV-------------- 699
Query: 83 NTQQQHRDCVSCMAFYHAEG--LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIV 140
+T +H + V+C F + LL TGS D +K W + K C ++ H ++VN
Sbjct: 700 HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR--NTMFGHTNSVNHCR 757
Query: 141 VNQDDGFVFTCSSDGSVKIW 160
+ DD + +CS+DG++++W
Sbjct: 758 FSPDDELLASCSADGTLRLW 777
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 131 AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSF 190
AHE V + DD ++ TCS+D VKIW + L T VN ++
Sbjct: 662 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA----TGKLVHTYDEHSEQVNCCHFTNK 717
Query: 191 FDNYFLYSGSSDGSINFW---EKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDT 247
++ L +GS+D + W +K+ + F H + HC ++L+ S S D
Sbjct: 718 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV-NHCR----FSPDDELLASCSADG 772
Query: 248 TIRVW 252
T+R+W
Sbjct: 773 TLRLW 777
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 26/205 (12%)
Query: 66 KVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTC 125
K+ LP F ++ H+ V + F L + S D ++ W
Sbjct: 993 KIIELPNNRVF------SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1046
Query: 126 VDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNAL 185
+ AH+ V + QD + + S DG+VK+W + T Q +V +
Sbjct: 1047 LQ---AHQETVKDFRLLQD-SRLLSWSFDGTVKVWNVITGRIERDFTC----HQGTVLSC 1098
Query: 186 ALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC----LVAIEKLIF 241
A+SS D S S+D + W D +S L+GH V C L I L+
Sbjct: 1099 AISS--DATKFSSTSADKTAKIWSFDLLSPLHE----LKGHNGCVRCSAFSLDGI--LLA 1150
Query: 242 SGSEDTTIRVWRRAEGGCYHECLAV 266
+G ++ IR+W ++G H C +
Sbjct: 1151 TGDDNGEIRIWNVSDGQLLHSCAPI 1175
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 82/216 (37%), Gaps = 24/216 (11%)
Query: 92 VSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC 151
VSC + G D +K + + R S V H+ V I D + +
Sbjct: 971 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV--FSSGVGHKKAVRHIQFTADGKTLISS 1028
Query: 152 SSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKD 211
S D +++W ++ + L+ Q +V L + L S S DG++ W
Sbjct: 1029 SEDSVIQVWN--WQTGDYVF---LQAHQETVKDFRL---LQDSRLLSWSFDGTVKVW--- 1077
Query: 212 KMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSG-SEDTTIRVWRRAEGGCYHECLAVLDGH 270
+ G F + C ++ + FS S D T ++W HE L GH
Sbjct: 1078 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE----LKGH 1133
Query: 271 RGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306
G VRC A SL+ G L+ + + ++W V
Sbjct: 1134 NGCVRCSAFSLD------GILLATGDDNGEIRIWNV 1163
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI-VVNQD 144
+ H D V C AF + + T S DK VK W + V ++ H VN N+
Sbjct: 661 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL--VHTYDEHSEQVNCCHFTNKS 718
Query: 145 DGFVF-TCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + T S+D +K+W +E +T+ +SVN S D+ L S S+DG
Sbjct: 719 NHLLLATGSNDFFLKLWDLNQKECRNTMFG----HTNSVNHCRFSP--DDELLASCSADG 772
Query: 204 SINFWE 209
++ W+
Sbjct: 773 TLRLWD 778
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 28/144 (19%)
Query: 2 VFTGSSSTRIRVW--RQPDCVERGFIKARHGEVRAI-LAHDNMLFTTNKDCKIRIWNFT- 57
+ + S + I+VW + D V F++A V+ L D+ L + + D +++WN
Sbjct: 1025 LISSSEDSVIQVWNWQTGDYV---FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1081
Query: 58 --VSDNFRTKKVTTL-------------------PRRSSFLSFSKSNTQQQHRDCVSCMA 96
+ +F + T L + SF S + + H CV C A
Sbjct: 1082 GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA 1141
Query: 97 FYHAEGLLYTGSFDKTVKAWRVLD 120
F LL TG + ++ W V D
Sbjct: 1142 FSLDGILLATGDDNGEIRIWNVSD 1165
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 110 DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSH 169
DK VKAW + + F+ H SN+N + + D + + DG + +W ++ +
Sbjct: 175 DKMVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 170 TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINF-----WEKDKMSGGF-NHGGFL 223
TL+ Q V +LA S + Y+L + ++ G F + D + F +
Sbjct: 233 TLS-----AQDEVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAA 285
Query: 224 QGHCFAVLCLVAIEKLIFSGSEDTTIRVWR 253
+ H + L A + +F+G D IRVW+
Sbjct: 286 EPHAVS-LAWSADGQTLFAGYTDNVIRVWQ 314
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 19 CVERGFIKARHGEVRAIL---AHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75
V RG ++ +G V ++ N+L + ++D + W T D V + S
Sbjct: 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESN 135
+ +DC +A + S+DKT++ W V FV H+S+
Sbjct: 67 IV-----------QDCTLTADGAYA----LSASWDKTLRLWDV--ATGETYQRFVGHKSD 109
Query: 136 VNAIVVNQDDGFVFTCSSDGSVKIW 160
V ++ +++ + + S D ++K+W
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVW 134
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 18/147 (12%)
Query: 192 DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEK---LIFSGSEDTT 248
D + S S D ++ W+ ++ G + F+ GH V+ V I+K +I SGS D T
Sbjct: 76 DGAYALSASWDKTLRLWD---VATGETYQRFV-GHKSDVMS-VDIDKKASMIISGSRDKT 130
Query: 249 IRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308
I+VW +CLA L GH V + + + S+ D+ K W +
Sbjct: 131 IKVWT-----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL-- 183
Query: 309 MPDQEKTMCLDYSDYHSNSKTTTTKMD 335
+ + D+ ++SN T T D
Sbjct: 184 ---NQFQIEADFIGHNSNINTLTASPD 207
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 26/140 (18%)
Query: 25 IKARHGEVR--AILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82
IKA EV A + D+ + T + D K++IW+ T K+
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA------TGKLV-------------- 692
Query: 83 NTQQQHRDCVSCMAFYHAEG--LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIV 140
+T +H + V+C F + LL TGS D +K W + K C ++ H ++VN
Sbjct: 693 HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR--NTMFGHTNSVNHCR 750
Query: 141 VNQDDGFVFTCSSDGSVKIW 160
+ DD + +CS+DG++++W
Sbjct: 751 FSPDDELLASCSADGTLRLW 770
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 131 AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSF 190
AHE V + DD ++ TCS+D VKIW + L T VN ++
Sbjct: 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA----TGKLVHTYDEHSEQVNCCHFTNK 710
Query: 191 FDNYFLYSGSSDGSINFW---EKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDT 247
++ L +GS+D + W +K+ + F H + HC ++L+ S S D
Sbjct: 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV-NHCR----FSPDDELLASCSADG 765
Query: 248 TIRVW 252
T+R+W
Sbjct: 766 TLRLW 770
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 26/205 (12%)
Query: 66 KVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTC 125
K+ LP F ++ H+ V + F L + S D ++ W
Sbjct: 986 KIIELPNNRVF------SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039
Query: 126 VDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNAL 185
+ AH+ V + QD + + S DG+VK+W + T Q +V +
Sbjct: 1040 LQ---AHQETVKDFRLLQD-SRLLSWSFDGTVKVWNVITGRIERDFTC----HQGTVLSC 1091
Query: 186 ALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC----LVAIEKLIF 241
A+SS D S S+D + W D +S L+GH V C L I L+
Sbjct: 1092 AISS--DATKFSSTSADKTAKIWSFDLLSPLHE----LKGHNGCVRCSAFSLDGI--LLA 1143
Query: 242 SGSEDTTIRVWRRAEGGCYHECLAV 266
+G ++ IR+W ++G H C +
Sbjct: 1144 TGDDNGEIRIWNVSDGQLLHSCAPI 1168
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 82/216 (37%), Gaps = 24/216 (11%)
Query: 92 VSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC 151
VSC + G D +K + + R S V H+ V I D + +
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV--FSSGVGHKKAVRHIQFTADGKTLISS 1021
Query: 152 SSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKD 211
S D +++W ++ + L+ Q +V L + L S S DG++ W
Sbjct: 1022 SEDSVIQVWN--WQTGDYVF---LQAHQETVKDFRL---LQDSRLLSWSFDGTVKVW--- 1070
Query: 212 KMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSG-SEDTTIRVWRRAEGGCYHECLAVLDGH 270
+ G F + C ++ + FS S D T ++W HE L GH
Sbjct: 1071 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE----LKGH 1126
Query: 271 RGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306
G VRC A SL+ G L+ + + ++W V
Sbjct: 1127 NGCVRCSAFSLD------GILLATGDDNGEIRIWNV 1156
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI-VVNQD 144
+ H D V C AF + + T S DK VK W + V ++ H VN N+
Sbjct: 654 KAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL--VHTYDEHSEQVNCCHFTNKS 711
Query: 145 DGFVF-TCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203
+ + T S+D +K+W +E +T+ +SVN S D+ L S S+DG
Sbjct: 712 NHLLLATGSNDFFLKLWDLNQKECRNTMFG----HTNSVNHCRFSP--DDELLASCSADG 765
Query: 204 SINFWE 209
++ W+
Sbjct: 766 TLRLWD 771
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 28/144 (19%)
Query: 2 VFTGSSSTRIRVW--RQPDCVERGFIKARHGEVRAI-LAHDNMLFTTNKDCKIRIWNFT- 57
+ + S + I+VW + D V F++A V+ L D+ L + + D +++WN
Sbjct: 1018 LISSSEDSVIQVWNWQTGDYV---FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVIT 1074
Query: 58 --VSDNFRTKKVTTL-------------------PRRSSFLSFSKSNTQQQHRDCVSCMA 96
+ +F + T L + SF S + + H CV C A
Sbjct: 1075 GRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSA 1134
Query: 97 FYHAEGLLYTGSFDKTVKAWRVLD 120
F LL TG + ++ W V D
Sbjct: 1135 FSLDGILLATGDDNGEIRIWNVSD 1158
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 110 DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSH 169
DK VKAW + + F+ H SN+N + + D + + DG + +W ++ +
Sbjct: 169 DKMVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 226
Query: 170 TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINF-----WEKDKMSGGF-NHGGFL 223
TL+ Q V +LA S + Y+L + ++ G F + D + F +
Sbjct: 227 TLS-----AQDEVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAA 279
Query: 224 QGHCFAVLCLVAIEKLIFSGSEDTTIRVWR 253
+ H + L A + +F+G D IRVW+
Sbjct: 280 EPHAVS-LAWSADGQTLFAGYTDNVIRVWQ 308
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 19 CVERGFIKARHGEVRAIL---AHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75
V RG ++ +G V ++ N+L + ++D + W T D V + S
Sbjct: 1 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 60
Query: 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESN 135
+ +DC +A + S+DKT++ W V FV H+S+
Sbjct: 61 IV-----------QDCTLTADGAYA----LSASWDKTLRLWDV--ATGETYQRFVGHKSD 103
Query: 136 VNAIVVNQDDGFVFTCSSDGSVKIW 160
V ++ +++ + + S D ++K+W
Sbjct: 104 VMSVDIDKKASMIISGSRDKTIKVW 128
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 18/147 (12%)
Query: 192 DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEK---LIFSGSEDTT 248
D + S S D ++ W+ ++ G + F+ GH V+ V I+K +I SGS D T
Sbjct: 70 DGAYALSASWDKTLRLWD---VATGETYQRFV-GHKSDVMS-VDIDKKASMIISGSRDKT 124
Query: 249 IRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308
I+VW +CLA L GH V + + + S+ D+ K W +
Sbjct: 125 IKVWT-----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL-- 177
Query: 309 MPDQEKTMCLDYSDYHSNSKTTTTKMD 335
+ + D+ ++SN T T D
Sbjct: 178 ---NQFQIEADFIGHNSNINTLTASPD 201
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 110 DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSH 169
DK VKAW + + F+ H SN+N + + D + + DG + +W ++ +
Sbjct: 175 DKMVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 170 TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINF-----WEKDKMSGGF-NHGGFL 223
TL+ Q V +LA S + Y+L + ++ G F + D + F +
Sbjct: 233 TLSA-----QDEVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAA 285
Query: 224 QGHCFAVLCLVAIEKLIFSGSEDTTIRVWR 253
+ H + L A + +F+G D IRVW+
Sbjct: 286 EPHAVS-LAWSADGQTLFAGYTDNVIRVWQ 314
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 19 CVERGFIKARHGEVRAIL---AHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75
V RG ++ +G V ++ N+L + ++D + W T D V + S
Sbjct: 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESN 135
+ +DC +A + S+DKT++ W V FV H+S+
Sbjct: 67 IV-----------QDCTLTADGAYA----LSASWDKTLRLWDV--ATGETYQRFVGHKSD 109
Query: 136 VNAIVVNQDDGFVFTCSSDGSVKIW 160
V ++ +++ + + S D ++K+W
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVW 134
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 18/147 (12%)
Query: 192 DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEK---LIFSGSEDTT 248
D + S S D ++ W+ ++ G + F+ GH V+ V I+K +I SGS D T
Sbjct: 76 DGAYALSASWDKTLRLWD---VATGETYQRFV-GHKSDVMS-VDIDKKASMIISGSRDKT 130
Query: 249 IRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308
I+VW +CLA L GH V + + + S+ D+ K W +
Sbjct: 131 IKVWT-----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL-- 183
Query: 309 MPDQEKTMCLDYSDYHSNSKTTTTKMD 335
+ + D+ ++SN T T D
Sbjct: 184 ---NQFQIEADFIGHNSNINTLTASPD 207
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 110 DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSH 169
DK VKAW + + F+ H SN+N + + D + + DG + +W ++ +
Sbjct: 175 DKMVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 170 TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINF-----WEKDKMSGGF-NHGGFL 223
TL+ Q V +LA S + Y+L + ++ G F + D + F +
Sbjct: 233 TLS-----AQDEVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAA 285
Query: 224 QGHCFAVLCLVAIEKLIFSGSEDTTIRVWR 253
+ H + L A + +F+G D IRVW+
Sbjct: 286 EPHAVS-LAWSADGQTLFAGYTDNVIRVWQ 314
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 19 CVERGFIKARHGEVRAIL---AHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75
V RG ++ +G V ++ N+L + ++D + W T D V + S
Sbjct: 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESN 135
+ +DC +A + S+DKT++ W V FV H+S+
Sbjct: 67 IV-----------QDCTLTADGAYA----LSASWDKTLRLWDV--ATGETYQRFVGHKSD 109
Query: 136 VNAIVVNQDDGFVFTCSSDGSVKIW 160
V ++ +++ + + S D ++K+W
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVW 134
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 18/147 (12%)
Query: 192 DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEK---LIFSGSEDTT 248
D + S S D ++ W+ ++ G + F+ GH V+ V I+K +I SGS D T
Sbjct: 76 DGAYALSASWDKTLRLWD---VATGETYQRFV-GHKSDVMS-VDIDKKASMIISGSRDKT 130
Query: 249 IRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308
I+VW +CLA L GH V + + + S+ D+ K W +
Sbjct: 131 IKVWT-----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL-- 183
Query: 309 MPDQEKTMCLDYSDYHSNSKTTTTKMD 335
+ + D+ ++SN T T D
Sbjct: 184 ---NQFQIEADFIGHNSNINTLTASPD 207
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 110 DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSH 169
DK VKAW + + F+ H SN+N + + D + + DG + +W ++ +
Sbjct: 175 DKMVKAWNL--NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 170 TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINF-----WEKDKMSGGF-NHGGFL 223
TL+ Q V +LA S + Y+L + ++ G F + D + F +
Sbjct: 233 TLS-----AQDEVFSLAFSP--NRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAA 285
Query: 224 QGHCFAVLCLVAIEKLIFSGSEDTTIRVWR 253
+ H + L A + +F+G D IRVW+
Sbjct: 286 EPHAVS-LAWSADGQTLFAGYTDNVIRVWQ 314
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 20/145 (13%)
Query: 19 CVERGFIKARHGEVRAIL---AHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75
V RG ++ +G V ++ N+L + ++D + W T D V + S
Sbjct: 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSH 66
Query: 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESN 135
+ +DC +A + S+DKT++ W V FV H+S+
Sbjct: 67 IV-----------QDCTLTADGAYA----LSASWDKTLRLWDV--ATGETYQRFVGHKSD 109
Query: 136 VNAIVVNQDDGFVFTCSSDGSVKIW 160
V ++ +++ + + S D ++K+W
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVW 134
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 18/147 (12%)
Query: 192 DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEK---LIFSGSEDTT 248
D + S S D ++ W+ ++ G + F+ GH V+ V I+K +I SGS D T
Sbjct: 76 DGAYALSASWDKTLRLWD---VATGETYQRFV-GHKSDVMS-VDIDKKASMIISGSRDKT 130
Query: 249 IRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308
I+VW +CLA L GH V + + + S+ D+ K W +
Sbjct: 131 IKVWT-----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL-- 183
Query: 309 MPDQEKTMCLDYSDYHSNSKTTTTKMD 335
+ + D+ ++SN T T D
Sbjct: 184 ---NQFQIEADFIGHNSNINTLTASPD 207
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 79/172 (45%), Gaps = 20/172 (11%)
Query: 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNV-NAIVVNQDDG 146
H+ V ++F +G++ +GS+DKT K W K + V + AH ++V +A VV+ +
Sbjct: 103 HQGNVCSLSF--QDGVVISGSWDKTAKVW----KEGSLVYNLQAHNASVWDAKVVSFSEN 156
Query: 147 FVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSIN 206
T S+D ++K+W +N + V LA+ D+ S S+DG I
Sbjct: 157 KFLTASADKTIKLW-----QNDKVIKTFSGIHNDVVRHLAV---VDDGHFISCSNDGLIK 208
Query: 207 FWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKL-IFSGSEDTTIRVWRRAEG 257
D +G +GH V C+ + I S ED T+R+W + G
Sbjct: 209 L--VDXHTGDVLR--TYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG 256
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 12/152 (7%)
Query: 103 LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRR 162
L +G+ D + K W V + C +F HES++NAI + T S D + +++
Sbjct: 198 LFVSGACDASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD- 254
Query: 163 VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF 222
R + +T + + +++ S L +G D + N W+ K + G
Sbjct: 255 -LRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYDDFNCNVWDALKA----DRAGV 307
Query: 223 LQGHCFAVLCLVAIEK--LIFSGSEDTTIRVW 252
L GH V CL + + +GS D+ +++W
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 12/152 (7%)
Query: 103 LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRR 162
L +G+ D + K W V + C +F HES++NAI + T S D + +++
Sbjct: 198 LFVSGACDASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD- 254
Query: 163 VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF 222
R + +T + + +++ S L +G D + N W+ K + G
Sbjct: 255 -LRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYDDFNCNVWDALKA----DRAGV 307
Query: 223 LQGHCFAVLCLVAIEK--LIFSGSEDTTIRVW 252
L GH V CL + + +GS D+ +++W
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 12/152 (7%)
Query: 103 LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRR 162
L +G+ D + K W V + C +F HES++NAI + T S D + +++
Sbjct: 198 LFVSGACDASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD- 254
Query: 163 VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF 222
R + +T + + +++ S L +G D + N W+ K + G
Sbjct: 255 -LRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYDDFNCNVWDALKA----DRAGV 307
Query: 223 LQGHCFAVLCLVAIEK--LIFSGSEDTTIRVW 252
L GH V CL + + +GS D+ +++W
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 12/152 (7%)
Query: 103 LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRR 162
L +G+ D + K W V + C +F HES++NAI + T S D + +++
Sbjct: 209 LFVSGACDASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD- 265
Query: 163 VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF 222
R + +T + + +++ S L +G D + N W+ K + G
Sbjct: 266 -LRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYDDFNCNVWDALKA----DRAGV 318
Query: 223 LQGHCFAVLCLVAIEK--LIFSGSEDTTIRVW 252
L GH V CL + + +GS D+ +++W
Sbjct: 319 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 67/152 (44%), Gaps = 12/152 (7%)
Query: 103 LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRR 162
L +G+ D + K W V + C +F HES++NAI + T S D + +++
Sbjct: 198 LFVSGACDASAKLWDV--REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD- 254
Query: 163 VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF 222
R + +T + + +++ S L +G D + N W+ K + G
Sbjct: 255 -LRADQELMTYSHDNIICGITSVSFSK--SGRLLLAGYDDFNCNVWDALKA----DRAGV 307
Query: 223 LQGHCFAVLCLVAIEK--LIFSGSEDTTIRVW 252
L GH V CL + + +GS D+ +++W
Sbjct: 308 LAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 106 TGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWR-RVY 164
+G DK W + + CV +F HES+VN++ + S D + +++ R
Sbjct: 215 SGGCDKKAMVWDM--RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272
Query: 165 RENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ 224
RE + ++ F SSV+ +LS L++G +D +IN W+ K S L
Sbjct: 273 REVAIYSKESIIFGASSVD-FSLS----GRLLFAGYNDYTINVWDVLKGS----RVSILF 323
Query: 225 GHCFAVLCL-VAIEKLIF-SGSEDTTIRVW 252
GH V L V+ + F SGS D T+RVW
Sbjct: 324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 22/228 (9%)
Query: 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI 139
+K + H + +S +F +++ + T S D T W V + + SF H ++V +
Sbjct: 145 AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL--LQSFHGHGADVLCL 202
Query: 140 -VVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYS 198
+ + G F G V+ S + +S VN++ D + S
Sbjct: 203 DLAPSETGNTFV---SGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAF--AS 257
Query: 199 GSSDGSINFWE--KDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAE 256
GS D + ++ D+ ++ + G L +L+F+G D TI VW +
Sbjct: 258 GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG--RLLFAGYNDYTINVWDVLK 315
Query: 257 GGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
G +++L GH V L S + G S S D T +VW
Sbjct: 316 G----SRVSILFGHENRVSTLRVSPD------GTAFCSGSWDHTLRVW 353
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 87/219 (39%), Gaps = 26/219 (11%)
Query: 104 LYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI-VVNQDDGFVF-TCSSDGSVKIWR 161
L T S DKT+K + V + +D+ HE V + + G + +CS DG V IW+
Sbjct: 26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 85
Query: 162 RVYRENSHTLTMTL-KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG 220
EN + + +SVN++ + L SSDG ++ E + G
Sbjct: 86 ---EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE--NGTTSP 140
Query: 221 GFLQGHCFAV----LCLVAIE-----------KLIFSGSEDTTIRVWRRAEGGCYHECLA 265
+ H V IE + +G D +++W+ + +
Sbjct: 141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 200
Query: 266 VLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
L+GH VR +A S V++ + S S D+T +W
Sbjct: 201 TLEGHSDWVRDVAWS---PTVLLRSYLASVSQDRTCIIW 236
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 86/219 (39%), Gaps = 26/219 (11%)
Query: 104 LYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI--VVNQDDGFVFTCSSDGSVKIWR 161
L T S DKT+K + V + +D+ HE V + + + +CS DG V IW+
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 162 RVYRENSHTLTMTL-KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG 220
EN + + +SVN++ + L SSDG ++ E + G
Sbjct: 84 ---EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE--NGTTSP 138
Query: 221 GFLQGHCFAV----LCLVAIE-----------KLIFSGSEDTTIRVWRRAEGGCYHECLA 265
+ H V IE + +G D +++W+ + +
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198
Query: 266 VLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
L+GH VR +A S V++ + S S D+T +W
Sbjct: 199 TLEGHSDWVRDVAWS---PTVLLRSYLASVSQDRTCIIW 234
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 87/219 (39%), Gaps = 26/219 (11%)
Query: 104 LYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI-VVNQDDGFVF-TCSSDGSVKIWR 161
L T S DKT+K + V + +D+ HE V + + G + +CS DG V IW+
Sbjct: 24 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83
Query: 162 RVYRENSHTLTMTL-KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG 220
EN + + +SVN++ + L SSDG ++ E + G
Sbjct: 84 ---EENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE--NGTTSP 138
Query: 221 GFLQGHCFAV----LCLVAIE-----------KLIFSGSEDTTIRVWRRAEGGCYHECLA 265
+ H V IE + +G D +++W+ + +
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198
Query: 266 VLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
L+GH VR +A S V++ + S S D+T +W
Sbjct: 199 TLEGHSDWVRDVAWS---PTVLLRSYLASVSQDRTCIIW 234
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 103 LLYTGSFDKTVKAWRVL-DKRCTCVD--SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
++ + S DKT+ W++ D+ + + H V+ +V++ D F + S DG++++
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFW 208
W + T T T +F + + L+++ DN + SGS D +I W
Sbjct: 90 W------DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 132
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 147 FVFTCSSDGSVKIWRRVYRENSHTLTM-TLKFQQSSVNALALSSFFDNYFLYSGSSDGSI 205
+ + S D ++ +W+ E ++ + L+ V+ + +SS D F SGS DG++
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS--DGQFALSGSWDGTL 87
Query: 206 NFWEKDKMSGGFNHGGFLQGHCFAVLCLV--AIEKLIFSGSEDTTIRVWRRAEGGCYHEC 263
W+ ++ G F+ GH VL + + + I SGS D TI++W G C +
Sbjct: 88 RLWD---LTTGTTTRRFV-GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTV 142
Query: 264 LAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306
+ H V C+ S + + S D+ KVW +
Sbjct: 143 QD--ESHSEWVSCVRFSPNSSNPI----IVSCGWDKLVKVWNL 179
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 11/146 (7%)
Query: 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI--VVNQDD 145
H V +AF + +GS DKT+K W L C +H V+ + N +
Sbjct: 104 HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV-CKYTVQDESHSEWVSCVRFSPNSSN 162
Query: 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSI 205
+ +C D VK+W + L +N + +S D SG DG
Sbjct: 163 PIIVSCGWDKLVKVWNLA----NCKLKTNHIGHTGYLNTVTVSP--DGSLCASGGKDGQA 216
Query: 206 NFWE--KDKMSGGFNHGGFLQGHCFA 229
W+ + K + G + CF+
Sbjct: 217 MLWDLNEGKHLYTLDGGDIINALCFS 242
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 103 LLYTGSFDKTVKAWRVL-DKRCTCVD--SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
++ + S DKT+ W++ D+ + + H V+ +V++ D F + S DG++++
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFW 208
W + T T T +F + + L+++ DN + SGS D +I W
Sbjct: 113 W------DLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 17/193 (8%)
Query: 118 VLDKRCTCVDSFVAHESNVNAIVVN-QDDGFVFTCSSDGSVKIWRRVYRENSHTLTM-TL 175
++ ++ T + H V I Q + + S D ++ +W+ E ++ + L
Sbjct: 23 MMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRAL 82
Query: 176 KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV- 234
+ V+ + +SS D F SGS DG++ W+ ++ G F+ GH VL +
Sbjct: 83 RGHSHFVSDVVISS--DGQFALSGSWDGTLRLWD---LTTGTTTRRFV-GHTKDVLSVAF 136
Query: 235 -AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVY 293
+ + I SGS D TI++W G C + + H V C+ S + +
Sbjct: 137 SSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQD--ESHSEWVSCVRFSPNSSNPI----IV 189
Query: 294 SSSLDQTFKVWRV 306
S D+ KVW +
Sbjct: 190 SCGWDKLVKVWNL 202
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 54/146 (36%), Gaps = 11/146 (7%)
Query: 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI--VVNQDD 145
H V +AF + +GS DKT+K W L C +H V+ + N +
Sbjct: 127 HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSN 185
Query: 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSI 205
+ +C D VK+W + L +N + +S D SG DG
Sbjct: 186 PIIVSCGWDKLVKVWNLA----NCKLKTNHIGHTGYLNTVTVSP--DGSLCASGGKDGQA 239
Query: 206 NFWE--KDKMSGGFNHGGFLQGHCFA 229
W+ + K + G + CF+
Sbjct: 240 MLWDLNEGKHLYTLDGGDIINALCFS 265
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 87/219 (39%), Gaps = 26/219 (11%)
Query: 104 LYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI-VVNQDDGFVF-TCSSDGSVKIWR 161
+ T S DKT+K + V + +D+ HE V + + G + +CS DG V IW+
Sbjct: 24 MATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83
Query: 162 RVYRENSHTLTMTL-KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG 220
EN + + +SVN++ + L SSDG ++ E + G
Sbjct: 84 ---EENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKE--NGTTSP 138
Query: 221 GFLQGHCFAV----LCLVAIE-----------KLIFSGSEDTTIRVWRRAEGGCYHECLA 265
+ H V IE + +G D +++W+ + +
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198
Query: 266 VLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
L+GH VR +A S V++ + S S D+T +W
Sbjct: 199 TLEGHSDWVRDVAWS---PTVLLRSYMASVSQDRTCIIW 234
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 25/184 (13%)
Query: 29 HGEVRAILAHDNM---LFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQ 85
HGEV + N ++T K C +++W+ + N +S N
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGKGC-VKVWDISHPGN-----------KSPVSQLDCLNRD 97
Query: 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD 145
R C L G T+ W + + A+ ++ D
Sbjct: 98 NYIRSC----KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS 153
Query: 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSI 205
F+C SDG++ +W + H T+ +FQ + A + D L++G D ++
Sbjct: 154 KVCFSCCSDGNIAVW------DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207
Query: 206 NFWE 209
W+
Sbjct: 208 RSWD 211
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR 122
Q H D SC+ + L+TG D TV++W + + R
Sbjct: 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 82/230 (35%), Gaps = 36/230 (15%)
Query: 34 AILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVS 93
A + + + +D +R+WN + + + TL R + H D VS
Sbjct: 116 AFSPDNRQIVSGGRDNALRVWNV------KGECMHTLSRGA-------------HTDWVS 156
Query: 94 CMAFYHA--EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC 151
C+ F + ++ +G +D VK W + R V H + V ++ V+ D +
Sbjct: 157 CVRFSPSLDAPVIVSGGWDNLVKVWDLATGRL--VTDLKGHTNYVTSVTVSPDGSLCASS 214
Query: 152 SSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKD 211
DG ++W E + Q F N + +++ I ++ +
Sbjct: 215 DKDGVARLWDLTKGEALSEMAAGAPINQ--------ICFSPNRYWMCAATEKGIRIFDLE 266
Query: 212 KMSGGFNHGGFLQGHCFAVLCLVAIE-----KLIFSGSEDTTIRVWRRAE 256
QG V V+I ++SG D IRVW +E
Sbjct: 267 NKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVSE 316
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 12/87 (13%)
Query: 223 LQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAAS 280
L+GH V + L S S D ++R+W G C ++ L GH V +A S
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL----GHTKDVLSVAFS 118
Query: 281 LEMEKVVMGFLVYSSSLDQTFKVWRVK 307
+ ++V G D +VW VK
Sbjct: 119 PDNRQIVSG------GRDNALRVWNVK 139
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 26/217 (11%)
Query: 106 TGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI-VVNQDDGFVF-TCSSDGSVKIWRRV 163
T S DKT+K + V + +D+ HE V + + G + +CS DG V IW+
Sbjct: 26 TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWK-- 83
Query: 164 YRENSHTLTMTL-KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF 222
EN + + +SVN++ + L SSDG ++ E + G
Sbjct: 84 -EENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKE--NGTTSPII 140
Query: 223 LQGHCFAV----LCLVAIE-----------KLIFSGSEDTTIRVWRRAEGGCYHECLAVL 267
+ H V IE + +G D +++W+ + + L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 268 DGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
+GH VR +A S V++ S S D+T +W
Sbjct: 201 EGHSDWVRDVAWS---PTVLLRSYXASVSQDRTCIIW 234
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGF 147
H VS +A + S+DKT++ W + + T FV H+S V ++ + D+
Sbjct: 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDL--RTGTTYKRFVGHQSEVYSVAFSPDNRQ 132
Query: 148 VFTCSSDGSVKIW 160
+ + ++ +K+W
Sbjct: 133 ILSAGAEREIKLW 145
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Query: 221 GFLQGHCFAVLCLVA--------IEKLIFSGSEDTTIRVWR---RAEGGCYHECLAVLDG 269
G L+GH V +VA ++ SGS D T+ +W+ + G + L G
Sbjct: 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG 74
Query: 270 HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307
H V LA S E SSS D+T ++W ++
Sbjct: 75 HNHFVSDLALSQE------NCFAISSSWDKTLRLWDLR 106
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 15/113 (13%)
Query: 103 LLYTGSFDKTVKAWRVLDKRCTCV-----DSFVAHESNVNAIVVNQDDGFVFTCSSDGSV 157
+L +GS DKTV W++ ++ + H V+ + ++Q++ F + S D ++
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 158 KIWRRVYRENSHTLTMTLKF--QQSSVNALALSSFFDNYFLYSGSSDGSINFW 208
++W + T T +F QS V ++A S DN + S ++ I W
Sbjct: 101 RLW------DLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLW 145
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW 160
+F AHESNVN + ++ + ++ T D + IW
Sbjct: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 106/254 (41%), Gaps = 48/254 (18%)
Query: 72 RRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA 131
R LS S T Q V+C+A+ H + TG + ++ W +K ++
Sbjct: 95 RHPFALSASSGKTTNQ----VTCLAWSHDGNSIVTGVENGELRLW---NKTGALLNVLNF 147
Query: 132 HESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ---SSVNA---- 184
H + + ++ N+D + + + +W + S T+ + ++ SS+NA
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVI----SGTVMQHFELKETGGSSINAENHS 203
Query: 185 ------LALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGH--CFAVLCLVAI 236
+ + D+ F+ G G+I ++ + + G L GH +VL
Sbjct: 204 GDGSLGVDVEWVDDDKFVIPGPK-GAIFVYQITEKT----PTGKLIGHHGPISVLEFNDT 258
Query: 237 EKLIFSGSEDTTIRVWRRAEG---GCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVY 293
KL+ S S+D T+R+W G C++ GH + A+ + +KV+
Sbjct: 259 NKLLLSASDDGTLRIWHGGNGNSQNCFY-------GHSQSIVS-ASWVGDDKVI------ 304
Query: 294 SSSLDQTFKVWRVK 307
S S+D + ++W +K
Sbjct: 305 SCSMDGSVRLWSLK 318
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 75/197 (38%), Gaps = 27/197 (13%)
Query: 104 LYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD--DGFVFTCSSDGSVKIWR 161
L T S D++VK + V + + HE V + + +CS D V IWR
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 162 RVYR--ENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINF--------WEKD 211
E SH SSVN++ + L GSSDG+I+ WE
Sbjct: 88 EENGTWEKSHEHA----GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 143
Query: 212 KMSGGFNHGGFLQGHCFAVLCLVAIE----------KLIFSGSEDTTIRVWRRAEGGCYH 261
K++ G AV+ I+ K SG D I++W+ E G +
Sbjct: 144 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK 203
Query: 262 ECLAVLDGHRGPVRCLA 278
E L+ H VR +A
Sbjct: 204 E-EQKLEAHSDWVRDVA 219
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 87 QHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESN--VNAIVVNQD 144
Q V+ +A+ +G+L S V+ W +L+K V+ F +E + V + V D
Sbjct: 92 QTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD 150
Query: 145 DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGS 204
+ D SVK+W + + + S VN +A D FL G DG
Sbjct: 151 GTQAVSGGKDFSVKVWDLSQK----AVLKSYNAHSSEVNCVAACPGKDTIFLSCG-EDGR 205
Query: 205 INFWEKDK 212
I W+ K
Sbjct: 206 ILLWDTRK 213
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 222 FLQGHCFAVLCLVAI---EKLIFSGSEDTTIRVWRRAEGGC---YHECLAVLDGHRGPVR 275
+ GH VL + + +I SGSED T+ VW +GG E + L+GH V
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 276 CLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306
+A + V++ S+ D VW V
Sbjct: 136 IVAWHPTAQNVLL-----SAGXDNVILVWDV 161
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 8/123 (6%)
Query: 90 DCVSCMAFYHAE---GLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDG 146
D + C++F L GS+ V+ W V D T + H V + + D
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 147 FVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSIN 206
VFT S D + K+W + S + + + V + + + +GS D ++
Sbjct: 100 KVFTASCDKTAKMW-----DLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLK 154
Query: 207 FWE 209
FW+
Sbjct: 155 FWD 157
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 93 SCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCS 152
SC+A + + + G D V +++ + V + V H + + ++ + + F+ +
Sbjct: 452 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEITSVAFSNNGAFL--VA 508
Query: 153 SDGSVKIWRRVYREN---SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWE 209
+D S K+ N +HT + T F + V ++ S DN L +GS D S+ W
Sbjct: 509 TDQSRKVIPYSVANNFELAHTNSWT--FHTAKVACVSWSP--DNVRLATGSLDNSVIVWN 564
Query: 210 KDKMSGGFNHGGFLQG-HCFAVLCLVA--IEKLIFSGSEDTTIRVWR 253
+K S +H ++G H + + V E I S +D+ I+ W
Sbjct: 565 MNKPS---DHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 608
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 15/167 (8%)
Query: 98 YHAEGLLY--TGSFDKTVKAWRVLDKRCTCV---DSF--VAHESNVNAIVVNQDDGFVFT 150
Y+ +G L+ TG D T+ + +D T V DS VAH +V + + D + +
Sbjct: 198 YNPDGSLFASTGG-DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS 256
Query: 151 CSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEK 210
S+D ++KIW + T+ + + + L + L S S++G INF
Sbjct: 257 ASADKTIKIWNVATLKVEKTIPVGTRIEDQQ-----LGIIWTKQALVSISANGFINFVNP 311
Query: 211 DKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEG 257
+ G + + L A K +FS + I W + G
Sbjct: 312 EL--GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 31 EVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRD 90
E+ ++ +N F D ++ ++V++NF + +N+ H
Sbjct: 493 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFE---------------LAHTNSWTFHTA 537
Query: 91 CVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHE-SNVNAIV-VNQDDGFV 148
V+C+++ L TGS D +V W + + AH S+VN+++ +N+ +
Sbjct: 538 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT--I 595
Query: 149 FTCSSDGSVKIWR 161
+ D ++K W
Sbjct: 596 VSAGQDSNIKFWN 608
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 66/172 (38%), Gaps = 33/172 (19%)
Query: 103 LLYTGSFDKTVKAWRV---------LD----KRCTCVDSF-VAHESNVNAIVVNQDDGFV 148
+L T S D VK W V LD K+ V+S AH VN + D +
Sbjct: 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260
Query: 149 FTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL------SSFFDNYFLYSGSSD 202
T +D +++W EN TL K +S L SS F F+ GS+
Sbjct: 261 LTVGTDNRMRLWNSSNGEN--TLVNYGKVCNNSKKGLKFTVSCGCSSEF--VFVPYGSTI 316
Query: 203 GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKL--IFSGSEDTTIRVW 252
+ ++++ L+GH V C V ++SGS D I W
Sbjct: 317 AVYTVYSGEQIT-------MLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 30/190 (15%)
Query: 88 HRDCVSCMAFY-HAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDG 146
HR V + +Y H G+ + SFDKT+K W + V +F + + V+
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 147 FVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSIN 206
V + V++ SH L+ + + A++ S +D Y L + S+D +
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSH----ILQGHRQEILAVSWSPRYD-YILATASADSRVK 212
Query: 207 FWEKDKMSGGF-------------------NHGGFLQGHCFAVLCLVAIEKLIFSGSEDT 247
W+ + SG H G + G CF L L+ G+ D
Sbjct: 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGL----HLLTVGT-DN 267
Query: 248 TIRVWRRAEG 257
+R+W + G
Sbjct: 268 RMRLWNSSNG 277
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 237 EKLIFSGSEDTTIRVWRRAEGGC---YHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVY 293
+ +I SGSED T+ VW +GG E + L+GH V +A + V++
Sbjct: 94 DNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLL----- 148
Query: 294 SSSLDQTFKVWRV 306
S+ D VW V
Sbjct: 149 SAGCDNVILVWDV 161
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 20/110 (18%)
Query: 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159
E L + GS K +K HE + + N++ +F+CS D S +
Sbjct: 13 GENLYFQGSHMKAIK--------------LTGHERPLTQVKYNKEGDLLFSCSKDSSASV 58
Query: 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWE 209
W Y N L TL ++ ++ + F + +GS+D SI W+
Sbjct: 59 W---YSLNGERLG-TLDGHTGTIWSIDVDCF--TKYCVTGSADYSIKLWD 102
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 239 LIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298
L+FS S+D++ VW G E L LDGH G + + + V G S D
Sbjct: 46 LLFSCSKDSSASVWYSLNG----ERLGTLDGHTGTIWSIDVDCFTKYCVTG------SAD 95
Query: 299 QTFKVWRV 306
+ K+W V
Sbjct: 96 YSIKLWDV 103
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 19/102 (18%)
Query: 36 LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCM 95
L H+++ + D K+ IW+ + N T K S+T H V+C+
Sbjct: 245 LLHESLFGSVADDQKLMIWD---TRNNNTSK--------------PSHTVDAHTAEVNCL 287
Query: 96 AF-YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNV 136
+F ++E +L TGS DKTV W + + + + SF +H+ +
Sbjct: 288 SFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEI 328
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 19/102 (18%)
Query: 36 LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCM 95
L H+++ + D K+ IW+ + N T K S+T H V+C+
Sbjct: 243 LLHESLFGSVADDQKLMIWD---TRNNNTSK--------------PSHTVDAHTAEVNCL 285
Query: 96 AF-YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNV 136
+F ++E +L TGS DKTV W + + + + SF +H+ +
Sbjct: 286 SFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEI 326
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 19/102 (18%)
Query: 36 LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCM 95
L H+++ + D K+ IW+ + N T K S+T H V+C+
Sbjct: 241 LLHESLFGSVADDQKLMIWD---TRNNNTSK--------------PSHTVDAHTAEVNCL 283
Query: 96 AF-YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNV 136
+F ++E +L TGS DKTV W + + + + SF +H+ +
Sbjct: 284 SFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEI 324
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 88/224 (39%), Gaps = 26/224 (11%)
Query: 93 SCMAFYHAEGLLYTGSFDKTVKAWRV-LDKRCTCVDSFV--AHESNVNAIVVNQDDGFVF 149
SC E L TGS D+T W V +R + S H ++V ++ +N + +F
Sbjct: 162 SCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMF 221
Query: 150 TCSS-DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFW 208
S D +V++W R S + T + +N++ F D +GS DG+ +
Sbjct: 222 ISGSCDTTVRLWD--LRITSRAV-RTYHGHEGDINSVKF--FPDGQRFGTGSDDGTCRLF 276
Query: 209 EKDKMSGG-----FNHGGFLQGHCFAVLCLVAIE---KLIFSGSEDTTIRVWRRAEGGCY 260
+ M G +N + ++ VA +L+F+G + VW
Sbjct: 277 D---MRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV 333
Query: 261 HECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304
+ + H G + CL S + + G S D+ K+W
Sbjct: 334 LNLGTLQNSHEGRISCLGLSSDGSALCTG------SWDKNLKIW 371
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 85 QQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAW 116
Q H +SC+ L TGS+DK +K W
Sbjct: 340 QNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 19/102 (18%)
Query: 36 LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCM 95
L H+++ + D K+ IW+ T S+N T+ P S++ H V+C+
Sbjct: 237 LLHESLFGSVADDQKLMIWD-TRSNN------TSKP----------SHSVDAHTAEVNCL 279
Query: 96 AF-YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNV 136
+F ++E +L TGS DKTV W + + + + SF +H+ +
Sbjct: 280 SFNPYSEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEI 320
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD 145
Q H ++ + F+ + L + S D +K W V K + + + H + V I +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSV--KDGSNPRTLIGHRATVTDIAIIDRG 190
Query: 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
V + S DG++++W HT + VN++AL
Sbjct: 191 RNVLSASLDGTIRLWECGTGTTIHTFNRK-ENPHDGVNSIAL 231
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD 145
Q H ++ + F+ + L + S D +K W V K + + + H + V I +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSV--KDGSNPRTLIGHRATVTDIAIIDRG 193
Query: 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187
V + S DG++++W HT + VN++AL
Sbjct: 194 RNVLSASLDGTIRLWECGTGTTIHTFNRK-ENPHDGVNSIAL 234
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 131 AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSF 190
H+ V+ +V + V TCSSD +K+++ ++ L+ + + SS+ A+ +S
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 191 FDNYFLYSGSSDGSINFWEKD 211
+ S S D ++ WE+D
Sbjct: 69 EYGRIIASASYDKTVKLWEED 89
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 131 AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSF 190
H+ V+ +V + V TCSSD +K+++ ++ L+ + + SS+ A+ +S
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 191 FDNYFLYSGSSDGSINFWEKD 211
+ S S D ++ WE+D
Sbjct: 67 EYGRIIASASYDKTVKLWEED 87
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 131 AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSF 190
H+ V+ +V + V TCSSD +K+++ ++ L+ + + SS+ A+ +S
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 191 FDNYFLYSGSSDGSINFWEKD 211
+ S S D ++ WE+D
Sbjct: 69 EYGRIIASASYDKTVKLWEED 89
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 87 QHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDG 146
+H D VS ++ + +GS D +K W + + + S+ AH + V + +
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ--VVLSSYRAHAAQVTCVAASPHKD 182
Query: 147 FVF-TCSSDGSVKIW 160
VF +CS D + +W
Sbjct: 183 SVFLSCSEDNRILLW 197
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 76/197 (38%), Gaps = 32/197 (16%)
Query: 136 VNAIVVNQDDGFVFTCSSDGSVKIW-----RRVYRENSHTLTMTLKFQQSSVNALALSSF 190
++++ ++ ++ +S V++W +R+ SH+ + V +L+
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS---------ARVGSLS---- 196
Query: 191 FDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAIEKLIFSGSEDTT 248
+++Y L SGS G I+ + +H L GH V L + + SG D
Sbjct: 197 WNSYILSSGSRSGHIHH---HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 253
Query: 249 IRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308
+ VW A G L H+G V+ +A V+ + D+ ++W V
Sbjct: 254 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA---TGGGTSDRHIRIWNVC- 309
Query: 309 MPDQEKTMCLDYSDYHS 325
CL D HS
Sbjct: 310 -----SGACLSAVDAHS 321
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 89/264 (33%), Gaps = 59/264 (22%)
Query: 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD 145
+Q + +S +A+ L G+ V+ W V ++ + + +H + V ++ N
Sbjct: 144 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--LRNMTSHSARVGSLSWNS-- 199
Query: 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSI 205
++ + S V H T++ Q+ L D L SG +D +
Sbjct: 200 -YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE----VCGLRWAPDGRHLASGGNDNLV 254
Query: 206 NFWEKDKMSGGFNHGGFLQGHCFAVLCLV--AIEKLIFS---GSEDTTIRVWRRAEGGC- 259
N W GG+ H AV + + + + G+ D IR+W G C
Sbjct: 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314
Query: 260 -----------------YHECL---------------------AVLDGHRGPVRCLAASL 281
Y E + A L GH V L S
Sbjct: 315 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 374
Query: 282 EMEKVVMGFLVYSSSLDQTFKVWR 305
+ G V S++ D+T ++WR
Sbjct: 375 D------GATVASAAADETLRLWR 392
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 42/197 (21%), Positives = 76/197 (38%), Gaps = 32/197 (16%)
Query: 136 VNAIVVNQDDGFVFTCSSDGSVKIW-----RRVYRENSHTLTMTLKFQQSSVNALALSSF 190
++++ ++ ++ +S V++W +R+ SH+ + V +L+
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS---------ARVGSLS---- 207
Query: 191 FDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAIEKLIFSGSEDTT 248
+++Y L SGS G I+ + +H L GH V L + + SG D
Sbjct: 208 WNSYILSSGSRSGHIHH---HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 264
Query: 249 IRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308
+ VW A G L H+G V+ +A V+ + D+ ++W V
Sbjct: 265 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA---TGGGTSDRHIRIWNVC- 320
Query: 309 MPDQEKTMCLDYSDYHS 325
CL D HS
Sbjct: 321 -----SGACLSAVDAHS 332
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 89/264 (33%), Gaps = 59/264 (22%)
Query: 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD 145
+Q + +S +A+ L G+ V+ W V ++ + + +H + V ++ N
Sbjct: 155 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR--LRNMTSHSARVGSLSWNS-- 210
Query: 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSI 205
++ + S V H T++ Q+ L D L SG +D +
Sbjct: 211 -YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE----VCGLRWAPDGRHLASGGNDNLV 265
Query: 206 NFWEKDKMSGGFNHGGFLQGHCFAVLCLV--AIEKLIFS---GSEDTTIRVWRRAEGGC- 259
N W GG+ H AV + + + + G+ D IR+W G C
Sbjct: 266 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 325
Query: 260 -----------------YHECL---------------------AVLDGHRGPVRCLAASL 281
Y E + A L GH V L S
Sbjct: 326 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP 385
Query: 282 EMEKVVMGFLVYSSSLDQTFKVWR 305
+ G V S++ D+T ++WR
Sbjct: 386 D------GATVASAAADETLRLWR 403
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 14/137 (10%)
Query: 191 FDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAIEKLIFSGSEDTT 248
+++Y L SGS G I+ + +H L GH V L + + SG D
Sbjct: 117 WNSYILSSGSRSGHIHH---HDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 173
Query: 249 IRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308
+ VW A G L H+G V+ +A V+ + D+ ++W V
Sbjct: 174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA---TGGGTSDRHIRIWNVC- 229
Query: 309 MPDQEKTMCLDYSDYHS 325
CL D HS
Sbjct: 230 -----SGACLSAVDAHS 241
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 14/182 (7%)
Query: 126 VDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNAL 185
V + H V + D + + +D V +W E T Q +V A+
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 186 ALSSFFDNYFLYSG-SSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFS-G 243
A + N G +SD I W + SG ++L ++LI G
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIW--NVCSGACLSAVDAHSQVCSILWSPHYKELISGHG 260
Query: 244 SEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303
+ +W+ +A L GH V L S + G V S++ D+T ++
Sbjct: 261 FAQNQLVIWKYPT----MAKVAELKGHTSRVLSLTMSPD------GATVASAAADETLRL 310
Query: 304 WR 305
WR
Sbjct: 311 WR 312
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 36 LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCM 95
L H+++ + D K+ IW+ T+ TT S+ H V+C+
Sbjct: 239 LLHESLFGSVADDQKLXIWD--------TRSNTT---------SKPSHLVDAHTAEVNCL 281
Query: 96 AF-YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNV 136
+F ++E +L TGS DKTV W + + + + +F +H+ +
Sbjct: 282 SFNPYSEFILATGSADKTVALWDLRNLKLK-LHTFESHKDEI 322
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 36 LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCM 95
L H+++ + D K+ IW+ T+ TT S+ H V+C+
Sbjct: 239 LLHESLFGSVADDQKLMIWD--------TRSNTT---------SKPSHLVDAHTAEVNCL 281
Query: 96 AF-YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNV 136
+F ++E +L TGS DKTV W + + + + +F +H+ +
Sbjct: 282 SFNPYSEFILATGSADKTVALWDLRNLKLK-LHTFESHKDEI 322
>pdb|1OLZ|A Chain A, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|1OLZ|B Chain B, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|3OL2|A Chain A, Receptor-Ligand Structure Of Human Semaphorin 4d With
Plexin B1
Length = 663
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 105 YTGSF---DKT---VKAWRVLDKRCTCVDS---FVAHESNVNAIVVNQD---DGFVFTC- 151
YT S DKT VK ++D T +D+ + + N IVV++ DG V+
Sbjct: 359 YTSSLNLPDKTLQFVKDHPLMDDSVTPIDNRPRLIKKDVNYTQIVVDRTQALDGTVYDVM 418
Query: 152 --SSDGSVKIWRRVYRENS-HTLTMTLKFQQ-SSVNALALSSFFDNYFLYSGSSDGSIN 206
S+D + + + E++ H + T FQ V L LSS N F+Y+GS+ G +
Sbjct: 419 FVSTDRGA-LHKAISLEHAVHIIEETQLFQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQ 476
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 13/143 (9%)
Query: 72 RRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA 131
+ FL + + + Q+ + + +++ ++ G+ D T++ W V +C +
Sbjct: 237 KSGEFLKYIEDD-QEPVQGGIFALSWLDSQKFATVGA-DATIRVWDVTTSKCVQKWTLDK 294
Query: 132 HE-SNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSF 190
+ N VV +G + + S DG++ + + E + T+ + AL ++
Sbjct: 295 QQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE----VLKTISGHNKGITALTVNP- 349
Query: 191 FDNYFLYSGSSDGSINFWEKDKM 213
L SGS DG I W M
Sbjct: 350 -----LISGSYDGRIMEWSSSSM 367
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.133 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,669,167
Number of Sequences: 62578
Number of extensions: 418403
Number of successful extensions: 1970
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1269
Number of HSP's gapped (non-prelim): 326
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)