Query 038537
Match_columns 358
No_of_seqs 759 out of 1946
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 12:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.3E-49 2.7E-54 309.4 24.1 294 1-352 129-465 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-49 6.3E-54 310.8 22.0 263 1-305 189-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 2.8E-45 6E-50 285.2 22.7 262 2-305 172-479 (480)
4 KOG0315 G-protein beta subunit 100.0 1.8E-42 3.9E-47 254.8 27.6 274 1-310 12-291 (311)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.5E-43 3.2E-48 278.8 19.2 274 27-348 173-452 (459)
6 KOG0286 G-protein beta subunit 100.0 1.6E-41 3.4E-46 255.4 27.4 272 1-305 69-343 (343)
7 KOG0281 Beta-TrCP (transducin 100.0 1.6E-42 3.4E-47 267.1 17.9 267 2-312 210-482 (499)
8 KOG0279 G protein beta subunit 100.0 9.7E-41 2.1E-45 249.6 26.3 262 20-323 6-272 (315)
9 KOG0279 G protein beta subunit 100.0 2.4E-40 5.2E-45 247.5 25.5 266 1-307 30-313 (315)
10 KOG0295 WD40 repeat-containing 100.0 1.9E-40 4.1E-45 256.6 22.1 266 1-306 122-405 (406)
11 KOG0645 WD40 repeat protein [G 100.0 3.4E-39 7.4E-44 240.3 27.0 273 1-307 29-311 (312)
12 KOG0281 Beta-TrCP (transducin 100.0 3.1E-41 6.8E-46 259.9 15.0 252 29-327 197-451 (499)
13 KOG0285 Pleiotropic regulator 100.0 7.8E-39 1.7E-43 247.4 24.4 269 1-308 165-440 (460)
14 KOG0284 Polyadenylation factor 100.0 5.6E-40 1.2E-44 257.6 17.2 266 2-308 111-381 (464)
15 KOG0263 Transcription initiati 100.0 4.9E-39 1.1E-43 272.1 22.9 259 29-309 378-651 (707)
16 KOG0282 mRNA splicing factor [ 100.0 2.4E-39 5.3E-44 259.2 17.6 267 1-305 229-503 (503)
17 KOG0319 WD40-repeat-containing 100.0 6.7E-38 1.5E-42 263.0 26.0 271 1-308 338-620 (775)
18 KOG0318 WD40 repeat stress pro 100.0 4.1E-37 9E-42 249.0 28.4 321 1-351 73-543 (603)
19 KOG0273 Beta-transducin family 100.0 9.9E-38 2.1E-42 249.3 24.0 264 1-308 193-483 (524)
20 KOG0286 G-protein beta subunit 100.0 1.4E-36 3.1E-41 228.8 27.7 283 21-350 47-339 (343)
21 KOG0313 Microtubule binding pr 100.0 4.5E-37 9.8E-42 239.2 25.7 271 1-307 117-418 (423)
22 KOG0296 Angio-associated migra 100.0 3.3E-37 7.1E-42 238.8 24.1 270 1-307 78-398 (399)
23 KOG0266 WD40 repeat-containing 100.0 3.3E-37 7.1E-42 266.6 27.0 267 1-307 173-454 (456)
24 KOG0265 U5 snRNP-specific prot 100.0 6.5E-37 1.4E-41 231.4 24.1 265 1-304 61-335 (338)
25 KOG0295 WD40 repeat-containing 100.0 6.2E-37 1.3E-41 237.2 23.7 269 21-339 100-387 (406)
26 KOG0645 WD40 repeat protein [G 100.0 1E-35 2.2E-40 221.9 28.7 260 20-315 5-269 (312)
27 KOG0293 WD40 repeat-containing 100.0 6.4E-37 1.4E-41 241.0 22.4 266 1-308 238-514 (519)
28 KOG0315 G-protein beta subunit 100.0 5.1E-36 1.1E-40 220.9 25.1 246 2-280 55-309 (311)
29 KOG0316 Conserved WD40 repeat- 100.0 2.8E-36 6.1E-41 220.6 23.3 262 1-307 31-299 (307)
30 KOG0276 Vesicle coat complex C 100.0 1.2E-36 2.5E-41 251.3 23.4 263 2-303 28-295 (794)
31 KOG0273 Beta-transducin family 100.0 4.5E-36 9.8E-41 239.8 25.8 264 1-307 249-523 (524)
32 KOG0318 WD40 repeat stress pro 100.0 2.6E-35 5.6E-40 238.6 30.2 277 2-308 163-561 (603)
33 KOG0291 WD40-repeat-containing 100.0 1E-35 2.3E-40 250.6 28.3 280 1-321 279-564 (893)
34 KOG0285 Pleiotropic regulator 100.0 1.4E-36 3E-41 235.0 20.9 247 20-310 142-392 (460)
35 KOG0292 Vesicle coat complex C 100.0 5.4E-36 1.2E-40 256.5 25.4 271 2-309 24-323 (1202)
36 KOG0316 Conserved WD40 repeat- 100.0 9.4E-36 2E-40 217.8 22.6 248 21-310 9-260 (307)
37 KOG0263 Transcription initiati 100.0 5.1E-36 1.1E-40 253.9 24.5 225 1-257 392-651 (707)
38 KOG0319 WD40-repeat-containing 100.0 1.5E-35 3.2E-40 249.0 26.6 290 2-334 296-598 (775)
39 KOG0278 Serine/threonine kinas 100.0 2.3E-36 5.1E-41 222.9 17.3 276 1-319 31-309 (334)
40 KOG0291 WD40-repeat-containing 100.0 1.7E-34 3.8E-39 243.2 30.0 287 1-309 159-510 (893)
41 cd00200 WD40 WD40 domain, foun 100.0 3.8E-34 8.2E-39 236.3 31.6 263 1-305 23-289 (289)
42 KOG0284 Polyadenylation factor 100.0 3.3E-36 7.2E-41 236.5 17.6 238 29-308 96-338 (464)
43 KOG0274 Cdc4 and related F-box 100.0 6.2E-35 1.3E-39 251.6 26.9 264 1-312 220-487 (537)
44 KOG0276 Vesicle coat complex C 100.0 1.2E-35 2.6E-40 245.3 20.9 247 24-310 8-260 (794)
45 KOG0275 Conserved WD40 repeat- 100.0 4.7E-36 1E-40 229.7 15.8 271 1-305 227-507 (508)
46 KOG0294 WD40 repeat-containing 100.0 3.9E-34 8.4E-39 217.9 25.0 265 2-309 4-283 (362)
47 PLN00181 protein SPA1-RELATED; 100.0 1.7E-33 3.7E-38 261.0 34.1 270 1-306 497-792 (793)
48 KOG0266 WD40 repeat-containing 100.0 9.1E-34 2E-38 245.2 28.4 277 29-349 159-445 (456)
49 KOG0282 mRNA splicing factor [ 100.0 3.4E-35 7.4E-40 235.6 16.8 286 20-348 205-497 (503)
50 KOG0313 Microtubule binding pr 100.0 5.4E-34 1.2E-38 222.2 21.9 273 27-350 103-401 (423)
51 KOG0265 U5 snRNP-specific prot 100.0 1.9E-33 4.2E-38 212.7 22.0 263 21-327 39-310 (338)
52 KOG0277 Peroxisomal targeting 100.0 1.4E-33 3E-38 208.7 20.6 263 7-306 36-308 (311)
53 PLN00181 protein SPA1-RELATED; 100.0 1.6E-32 3.4E-37 254.6 32.0 271 8-308 457-739 (793)
54 KOG0643 Translation initiation 100.0 6.5E-33 1.4E-37 206.6 23.0 272 1-307 24-317 (327)
55 KOG0292 Vesicle coat complex C 100.0 2.3E-33 5.1E-38 240.5 22.5 248 26-309 6-282 (1202)
56 KOG0277 Peroxisomal targeting 100.0 4.1E-33 8.9E-38 206.2 19.1 262 47-349 36-302 (311)
57 KOG0268 Sof1-like rRNA process 100.0 2.4E-33 5.2E-38 217.4 16.5 262 2-308 82-346 (433)
58 KOG0283 WD40 repeat-containing 100.0 1.5E-32 3.3E-37 234.7 22.8 265 23-309 260-578 (712)
59 KOG0289 mRNA splicing factor [ 100.0 6.8E-32 1.5E-36 214.0 24.3 270 2-306 234-505 (506)
60 KOG0306 WD40-repeat-containing 100.0 8.5E-32 1.8E-36 227.0 25.6 264 5-308 390-665 (888)
61 KOG0305 Anaphase promoting com 100.0 2.2E-31 4.7E-36 221.7 27.0 264 5-309 193-463 (484)
62 cd00200 WD40 WD40 domain, foun 100.0 6.6E-31 1.4E-35 216.9 30.1 244 23-308 3-250 (289)
63 KOG0300 WD40 repeat-containing 100.0 4.6E-32 1E-36 207.2 20.8 294 1-308 162-477 (481)
64 KOG0288 WD40 repeat protein Ti 100.0 3.8E-33 8.1E-38 219.7 14.8 262 2-305 190-459 (459)
65 KOG0296 Angio-associated migra 100.0 1.9E-31 4E-36 207.1 22.9 261 21-327 56-370 (399)
66 PTZ00421 coronin; Provisional 100.0 3.4E-30 7.4E-35 222.1 33.1 256 2-282 35-314 (493)
67 PTZ00420 coronin; Provisional 100.0 1.1E-30 2.5E-35 226.1 29.5 254 4-282 49-317 (568)
68 PTZ00421 coronin; Provisional 100.0 3.4E-30 7.5E-35 222.1 31.5 251 32-309 25-292 (493)
69 KOG1332 Vesicle coat complex C 100.0 1.2E-31 2.7E-36 197.3 19.1 256 26-308 8-287 (299)
70 KOG0640 mRNA cleavage stimulat 100.0 4.4E-31 9.6E-36 201.1 20.3 272 22-307 105-426 (430)
71 KOG1408 WD40 repeat protein [F 100.0 6.3E-31 1.4E-35 221.0 22.6 290 3-308 340-714 (1080)
72 KOG0264 Nucleosome remodeling 100.0 8.1E-31 1.8E-35 209.1 21.0 261 27-308 122-405 (422)
73 KOG1446 Histone H3 (Lys4) meth 100.0 2.8E-29 6.2E-34 191.8 27.9 269 1-307 28-303 (311)
74 KOG0299 U3 snoRNP-associated p 100.0 2.5E-30 5.4E-35 206.6 22.8 263 22-309 135-412 (479)
75 KOG0283 WD40 repeat-containing 100.0 4.6E-31 1E-35 225.7 19.7 209 23-256 363-577 (712)
76 KOG0646 WD40 repeat protein [G 100.0 3.5E-30 7.6E-35 206.1 23.2 281 5-322 13-316 (476)
77 KOG0310 Conserved WD40 repeat- 100.0 3.7E-30 8E-35 207.1 23.4 257 9-308 48-310 (487)
78 KOG0306 WD40-repeat-containing 100.0 1.3E-29 2.7E-34 214.1 26.2 278 6-329 341-638 (888)
79 KOG1407 WD40 repeat protein [F 100.0 5E-30 1.1E-34 190.7 20.8 245 23-309 14-263 (313)
80 KOG0772 Uncharacterized conser 100.0 2.9E-30 6.3E-35 209.1 21.0 297 2-320 182-500 (641)
81 KOG0274 Cdc4 and related F-box 100.0 4.4E-30 9.6E-35 221.7 23.1 244 28-323 207-451 (537)
82 KOG1407 WD40 repeat protein [F 100.0 2.2E-29 4.7E-34 187.3 23.2 252 2-298 35-293 (313)
83 KOG0647 mRNA export protein (c 100.0 2E-29 4.3E-34 191.2 22.4 244 27-308 25-282 (347)
84 KOG0301 Phospholipase A2-activ 100.0 1.6E-29 3.4E-34 211.6 24.0 254 2-308 28-289 (745)
85 PTZ00420 coronin; Provisional 100.0 6.8E-29 1.5E-33 215.1 28.9 224 45-308 50-294 (568)
86 KOG1446 Histone H3 (Lys4) meth 100.0 2.2E-28 4.7E-33 187.0 27.9 250 19-308 4-263 (311)
87 KOG0973 Histone transcription 100.0 1.1E-29 2.4E-34 222.8 23.8 286 2-308 28-356 (942)
88 KOG0293 WD40 repeat-containing 100.0 8.1E-30 1.8E-34 201.2 20.5 266 20-329 215-486 (519)
89 KOG1036 Mitotic spindle checkp 100.0 6.4E-29 1.4E-33 189.1 24.2 256 1-297 27-294 (323)
90 KOG0264 Nucleosome remodeling 100.0 1.1E-29 2.3E-34 202.8 20.4 239 1-256 139-405 (422)
91 KOG0308 Conserved WD40 repeat- 100.0 3.2E-30 6.9E-35 214.3 17.5 271 1-309 39-329 (735)
92 KOG0275 Conserved WD40 repeat- 100.0 1.3E-29 2.8E-34 194.5 18.5 244 33-309 219-469 (508)
93 KOG0308 Conserved WD40 repeat- 100.0 9.6E-30 2.1E-34 211.5 18.8 242 38-309 36-287 (735)
94 KOG0310 Conserved WD40 repeat- 100.0 6E-29 1.3E-33 200.1 21.7 241 28-308 25-269 (487)
95 KOG1332 Vesicle coat complex C 100.0 6.1E-29 1.3E-33 183.2 19.6 234 2-256 26-287 (299)
96 KOG1036 Mitotic spindle checkp 100.0 2.1E-28 4.5E-33 186.3 23.0 243 28-310 12-265 (323)
97 KOG0647 mRNA export protein (c 100.0 2E-28 4.3E-33 185.9 22.1 256 1-298 42-315 (347)
98 KOG0268 Sof1-like rRNA process 100.0 2.7E-30 5.9E-35 200.6 12.2 243 21-308 58-303 (433)
99 KOG0294 WD40 repeat-containing 100.0 2.5E-28 5.4E-33 186.4 22.1 242 1-279 55-305 (362)
100 KOG0321 WD40 repeat-containing 100.0 1.6E-28 3.5E-33 203.8 21.8 278 1-308 66-392 (720)
101 KOG0641 WD40 repeat protein [G 100.0 7.8E-27 1.7E-31 170.5 27.2 259 28-308 31-304 (350)
102 KOG0299 U3 snoRNP-associated p 100.0 1.1E-27 2.3E-32 191.6 24.5 271 1-308 156-457 (479)
103 KOG1539 WD repeat protein [Gen 100.0 1.6E-27 3.4E-32 203.6 26.9 276 2-308 175-607 (910)
104 KOG0305 Anaphase promoting com 100.0 1.5E-28 3.3E-33 204.8 19.4 225 1-257 231-463 (484)
105 KOG0288 WD40 repeat protein Ti 100.0 5.1E-29 1.1E-33 196.6 15.1 250 22-309 168-419 (459)
106 KOG2445 Nuclear pore complex c 100.0 3.3E-27 7.1E-32 179.8 24.2 272 26-323 10-331 (361)
107 KOG0772 Uncharacterized conser 100.0 3.7E-28 8.1E-33 197.0 20.2 284 22-352 160-471 (641)
108 KOG0301 Phospholipase A2-activ 100.0 6.2E-28 1.3E-32 202.2 21.9 242 19-307 4-249 (745)
109 KOG4283 Transcription-coupled 100.0 2.9E-27 6.3E-32 179.1 20.7 271 1-306 58-364 (397)
110 KOG0646 WD40 repeat protein [G 100.0 2.4E-27 5.3E-32 189.9 20.7 269 7-311 59-354 (476)
111 KOG0269 WD40 repeat-containing 100.0 5E-28 1.1E-32 205.1 16.6 229 1-257 102-342 (839)
112 KOG0300 WD40 repeat-containing 100.0 2.5E-27 5.4E-32 181.5 18.8 251 19-308 138-429 (481)
113 KOG0289 mRNA splicing factor [ 100.0 1.3E-26 2.8E-31 184.2 23.5 251 31-325 221-476 (506)
114 KOG1274 WD40 repeat protein [G 100.0 1.2E-26 2.6E-31 200.3 24.7 252 1-284 27-283 (933)
115 KOG0643 Translation initiation 100.0 7.3E-27 1.6E-31 174.5 19.6 220 84-321 5-234 (327)
116 KOG0973 Histone transcription 100.0 6.3E-27 1.4E-31 205.7 22.0 287 29-351 13-338 (942)
117 KOG0269 WD40 repeat-containing 100.0 9.6E-28 2.1E-32 203.4 15.8 236 38-308 99-341 (839)
118 KOG2106 Uncharacterized conser 100.0 2.3E-25 5E-30 180.5 28.6 284 2-306 260-625 (626)
119 KOG0641 WD40 repeat protein [G 100.0 1.2E-24 2.7E-29 159.1 27.2 277 1-307 46-349 (350)
120 KOG0640 mRNA cleavage stimulat 100.0 4.4E-27 9.5E-32 179.5 14.9 210 84-308 107-336 (430)
121 KOG2096 WD40 repeat protein [G 100.0 6.4E-26 1.4E-30 173.7 21.2 268 22-305 79-400 (420)
122 KOG1539 WD repeat protein [Gen 99.9 3.9E-25 8.4E-30 189.2 26.9 194 90-307 449-648 (910)
123 KOG1063 RNA polymerase II elon 99.9 1.1E-25 2.5E-30 188.7 22.1 325 1-352 161-632 (764)
124 KOG1188 WD40 repeat protein [G 99.9 1E-25 2.2E-30 174.0 20.2 279 2-307 43-346 (376)
125 KOG2445 Nuclear pore complex c 99.9 6E-25 1.3E-29 167.5 23.9 261 86-349 10-299 (361)
126 KOG0270 WD40 repeat-containing 99.9 4.9E-26 1.1E-30 181.4 18.7 255 39-310 192-452 (463)
127 KOG0639 Transducin-like enhanc 99.9 4.7E-26 1E-30 184.5 18.4 262 2-307 434-704 (705)
128 KOG0278 Serine/threonine kinas 99.9 6E-27 1.3E-31 173.4 11.7 223 2-258 74-300 (334)
129 KOG0270 WD40 repeat-containing 99.9 9.4E-26 2E-30 179.8 19.2 230 1-258 194-452 (463)
130 KOG2048 WD40 repeat protein [G 99.9 2E-24 4.4E-29 180.8 27.6 272 2-308 40-320 (691)
131 KOG1408 WD40 repeat protein [F 99.9 5.2E-25 1.1E-29 185.7 24.1 303 1-344 272-701 (1080)
132 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.4E-24 1.8E-28 176.0 30.5 266 1-309 3-281 (300)
133 KOG0302 Ribosome Assembly prot 99.9 3.3E-25 7.1E-30 173.4 20.0 260 27-301 149-433 (440)
134 KOG2106 Uncharacterized conser 99.9 4E-24 8.7E-29 173.4 25.5 263 6-308 177-478 (626)
135 KOG0302 Ribosome Assembly prot 99.9 2.2E-25 4.7E-30 174.3 17.2 216 86-311 148-382 (440)
136 KOG0639 Transducin-like enhanc 99.9 3.3E-25 7.1E-30 179.6 18.4 246 27-308 417-664 (705)
137 KOG0267 Microtubule severing p 99.9 1.8E-26 3.8E-31 194.4 10.5 247 4-298 9-259 (825)
138 KOG2055 WD40 repeat protein [G 99.9 5.2E-24 1.1E-28 170.8 23.0 271 1-307 227-512 (514)
139 KOG4283 Transcription-coupled 99.9 1.2E-24 2.5E-29 165.2 18.1 236 23-310 37-279 (397)
140 KOG1274 WD40 repeat protein [G 99.9 1.2E-23 2.7E-28 181.9 26.1 246 27-309 11-264 (933)
141 KOG1273 WD40 repeat protein [G 99.9 1.1E-23 2.4E-28 161.3 22.4 272 1-310 37-325 (405)
142 KOG0267 Microtubule severing p 99.9 3.9E-26 8.5E-31 192.4 10.0 201 86-308 25-227 (825)
143 KOG2048 WD40 repeat protein [G 99.9 8.2E-23 1.8E-27 171.3 27.1 248 27-310 23-278 (691)
144 KOG1034 Transcriptional repres 99.9 9E-25 2E-29 168.0 14.2 236 1-255 107-383 (385)
145 KOG4328 WD40 protein [Function 99.9 2.3E-23 5.1E-28 166.9 21.6 274 1-306 202-494 (498)
146 KOG0650 WD40 repeat nucleolar 99.9 3.4E-23 7.4E-28 171.4 22.8 285 1-304 414-732 (733)
147 KOG4378 Nuclear protein COP1 [ 99.9 1.3E-23 2.9E-28 170.1 19.0 248 3-282 51-304 (673)
148 KOG4378 Nuclear protein COP1 [ 99.9 3.2E-23 7E-28 167.9 20.5 291 4-340 7-305 (673)
149 KOG0321 WD40 repeat-containing 99.9 3.4E-23 7.5E-28 172.5 21.0 249 39-312 64-352 (720)
150 KOG0322 G-protein beta subunit 99.9 1.6E-23 3.5E-28 156.5 16.6 254 21-306 6-322 (323)
151 KOG4328 WD40 protein [Function 99.9 4.9E-23 1.1E-27 165.1 19.9 268 14-308 171-451 (498)
152 KOG2919 Guanine nucleotide-bin 99.9 3.7E-22 8E-27 153.5 21.9 263 2-298 64-361 (406)
153 KOG2096 WD40 repeat protein [G 99.9 1.3E-22 2.8E-27 155.8 18.8 215 83-308 80-309 (420)
154 KOG1034 Transcriptional repres 99.9 1.5E-22 3.3E-27 155.8 18.9 273 2-307 58-383 (385)
155 KOG1063 RNA polymerase II elon 99.9 3E-22 6.5E-27 168.4 20.8 282 1-307 71-391 (764)
156 KOG0642 Cell-cycle nuclear pro 99.9 1.8E-23 3.9E-28 171.8 13.0 267 40-326 243-574 (577)
157 KOG0307 Vesicle coat complex C 99.9 2.8E-23 6E-28 184.0 13.9 241 41-310 82-330 (1049)
158 KOG2055 WD40 repeat protein [G 99.9 9.1E-22 2E-26 158.1 21.1 247 29-307 213-467 (514)
159 KOG1007 WD repeat protein TSSC 99.9 1.1E-21 2.4E-26 148.7 20.3 280 41-350 28-342 (370)
160 KOG1445 Tumor-specific antigen 99.9 1.6E-22 3.5E-27 168.8 16.4 119 181-310 629-753 (1012)
161 KOG1273 WD40 repeat protein [G 99.9 9.4E-22 2E-26 150.8 19.1 199 92-309 26-228 (405)
162 KOG1517 Guanine nucleotide bin 99.9 2.8E-21 6E-26 170.0 23.1 281 2-308 1079-1382(1387)
163 KOG1009 Chromatin assembly com 99.9 1.1E-21 2.5E-26 155.1 18.2 286 1-308 28-373 (434)
164 KOG1587 Cytoplasmic dynein int 99.9 9.3E-21 2E-25 163.0 25.1 273 9-308 222-517 (555)
165 KOG0650 WD40 repeat nucleolar 99.9 2.8E-21 6.1E-26 160.1 20.8 265 21-327 392-703 (733)
166 KOG0303 Actin-binding protein 99.9 1.2E-21 2.7E-26 154.4 17.0 235 24-282 76-320 (472)
167 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.8E-20 8.2E-25 154.1 26.7 246 2-281 46-300 (300)
168 KOG1007 WD repeat protein TSSC 99.9 2.6E-20 5.6E-25 141.3 21.2 275 7-307 38-361 (370)
169 KOG0307 Vesicle coat complex C 99.9 4.3E-22 9.4E-27 176.5 13.4 210 88-308 63-285 (1049)
170 KOG2919 Guanine nucleotide-bin 99.9 2.2E-20 4.7E-25 143.9 20.9 255 36-311 58-331 (406)
171 KOG0649 WD40 repeat protein [G 99.9 2.5E-19 5.3E-24 132.8 25.5 273 1-304 24-313 (325)
172 KOG1538 Uncharacterized conser 99.9 8.4E-21 1.8E-25 159.6 19.9 258 8-308 32-294 (1081)
173 PRK11028 6-phosphogluconolacto 99.9 1.2E-18 2.5E-23 146.6 30.1 276 3-308 6-305 (330)
174 KOG0290 Conserved WD40 repeat- 99.9 2.4E-20 5.3E-25 141.5 15.9 213 86-311 93-322 (364)
175 KOG4227 WD40 repeat protein [G 99.9 1.4E-19 3.1E-24 143.0 19.9 284 1-310 70-390 (609)
176 KOG1009 Chromatin assembly com 99.9 2E-19 4.3E-24 142.6 19.7 282 29-349 13-353 (434)
177 KOG1963 WD40 repeat protein [G 99.9 2.3E-18 5.1E-23 149.1 27.8 325 5-349 33-520 (792)
178 KOG1240 Protein kinase contain 99.8 6E-19 1.3E-23 157.7 23.2 286 1-305 1063-1431(1431)
179 KOG0649 WD40 repeat protein [G 99.8 2.2E-18 4.7E-23 127.9 22.1 241 34-307 17-274 (325)
180 KOG0642 Cell-cycle nuclear pro 99.8 1.2E-19 2.5E-24 149.6 16.1 247 2-271 309-573 (577)
181 KOG0644 Uncharacterized conser 99.8 4.3E-21 9.4E-26 164.9 8.0 244 22-310 183-429 (1113)
182 KOG0303 Actin-binding protein 99.8 2.4E-19 5.1E-24 141.7 16.3 212 84-310 76-297 (472)
183 KOG0322 G-protein beta subunit 99.8 2.7E-19 5.9E-24 134.1 15.7 247 2-254 28-322 (323)
184 KOG4227 WD40 repeat protein [G 99.8 7.7E-19 1.7E-23 139.0 18.9 263 23-313 50-328 (609)
185 KOG1445 Tumor-specific antigen 99.8 2.3E-19 4.9E-24 150.2 16.7 246 34-308 586-845 (1012)
186 COG2319 FOG: WD40 repeat [Gene 99.8 5.9E-17 1.3E-21 141.7 31.6 267 2-310 80-362 (466)
187 KOG0771 Prolactin regulatory e 99.8 1.1E-18 2.3E-23 139.3 16.9 200 93-308 148-355 (398)
188 KOG1523 Actin-related protein 99.8 9.1E-18 2E-22 129.4 20.9 247 24-299 5-270 (361)
189 KOG2110 Uncharacterized conser 99.8 2.4E-17 5.3E-22 129.4 23.6 180 9-213 68-250 (391)
190 KOG1587 Cytoplasmic dynein int 99.8 6.4E-18 1.4E-22 145.7 21.4 245 1-257 257-518 (555)
191 KOG1523 Actin-related protein 99.8 2.9E-18 6.4E-23 132.1 17.0 213 88-309 9-238 (361)
192 KOG1188 WD40 repeat protein [G 99.8 1.2E-17 2.5E-22 129.9 19.8 195 40-258 41-245 (376)
193 COG2319 FOG: WD40 repeat [Gene 99.8 1.4E-16 2.9E-21 139.4 28.8 246 24-310 60-317 (466)
194 KOG0290 Conserved WD40 repeat- 99.8 7.4E-18 1.6E-22 128.2 17.3 251 27-303 94-361 (364)
195 KOG1334 WD40 repeat protein [G 99.8 1.3E-18 2.9E-23 141.1 12.6 279 1-308 156-467 (559)
196 KOG1524 WD40 repeat-containing 99.8 2.2E-17 4.7E-22 135.8 19.5 243 3-303 29-282 (737)
197 KOG1963 WD40 repeat protein [G 99.8 2.5E-16 5.4E-21 136.8 26.8 277 1-309 219-540 (792)
198 PRK01742 tolB translocation pr 99.8 1.5E-16 3.2E-21 137.9 24.2 215 48-308 183-402 (429)
199 KOG1240 Protein kinase contain 99.8 1.8E-16 4E-21 142.2 24.0 267 18-310 1037-1337(1431)
200 KOG0644 Uncharacterized conser 99.8 2.6E-18 5.6E-23 148.1 11.7 258 1-308 204-469 (1113)
201 PRK01742 tolB translocation pr 99.8 7.1E-17 1.5E-21 139.9 20.5 233 8-282 183-426 (429)
202 KOG1310 WD40 repeat protein [G 99.8 1.3E-17 2.8E-22 137.5 14.2 219 21-259 42-307 (758)
203 PRK11028 6-phosphogluconolacto 99.8 3.1E-15 6.8E-20 125.8 28.0 240 42-309 5-260 (330)
204 KOG1310 WD40 repeat protein [G 99.8 2.6E-17 5.7E-22 135.7 14.6 220 82-311 43-307 (758)
205 KOG1517 Guanine nucleotide bin 99.7 5.1E-16 1.1E-20 137.5 22.2 240 38-308 1075-1334(1387)
206 KOG1272 WD40-repeat-containing 99.7 8.1E-18 1.8E-22 135.8 9.7 245 2-282 144-390 (545)
207 KOG2139 WD40 repeat protein [G 99.7 1.2E-14 2.5E-19 114.4 25.3 285 2-308 113-432 (445)
208 KOG2394 WD40 protein DMR-N9 [G 99.7 2.7E-16 5.8E-21 129.4 16.7 182 2-189 188-384 (636)
209 KOG1538 Uncharacterized conser 99.7 2.4E-16 5.2E-21 133.2 16.4 229 31-306 14-251 (1081)
210 KOG0771 Prolactin regulatory e 99.7 2.4E-16 5.1E-21 126.0 15.2 198 31-256 148-355 (398)
211 KOG2110 Uncharacterized conser 99.7 4.7E-15 1E-19 116.8 22.1 223 2-257 20-250 (391)
212 KOG1524 WD40 repeat-containing 99.7 2.7E-16 5.8E-21 129.5 15.3 204 2-252 78-283 (737)
213 KOG1334 WD40 repeat protein [G 99.7 4.5E-16 9.8E-21 126.6 14.3 261 21-308 134-425 (559)
214 KOG2111 Uncharacterized conser 99.7 5.6E-14 1.2E-18 108.7 23.8 182 9-214 75-259 (346)
215 KOG3881 Uncharacterized conser 99.7 7E-15 1.5E-19 116.6 17.4 211 86-309 102-322 (412)
216 KOG2394 WD40 protein DMR-N9 [G 99.7 7.4E-15 1.6E-19 121.1 17.3 203 99-309 183-454 (636)
217 PF02239 Cytochrom_D1: Cytochr 99.7 6.1E-13 1.3E-17 111.8 27.7 272 2-311 9-351 (369)
218 KOG3881 Uncharacterized conser 99.6 2E-14 4.2E-19 114.1 16.7 193 2-212 118-321 (412)
219 PRK03629 tolB translocation pr 99.6 2.7E-13 5.9E-18 117.4 24.7 232 10-282 180-428 (429)
220 KOG0280 Uncharacterized conser 99.6 1.6E-13 3.6E-18 105.0 20.3 270 8-306 45-332 (339)
221 KOG1272 WD40-repeat-containing 99.6 6.2E-16 1.3E-20 125.1 7.5 197 92-312 132-328 (545)
222 KOG2321 WD40 repeat protein [G 99.6 2E-13 4.3E-18 113.8 21.3 266 1-310 66-346 (703)
223 PRK03629 tolB translocation pr 99.6 9.4E-13 2E-17 114.0 26.4 195 87-306 196-405 (429)
224 PRK04922 tolB translocation pr 99.6 4.9E-13 1.1E-17 116.3 24.5 196 86-306 200-410 (433)
225 PF10282 Lactonase: Lactonase, 99.6 2.8E-11 6.1E-16 102.0 34.1 280 2-308 2-323 (345)
226 PRK04922 tolB translocation pr 99.6 3.2E-13 7E-18 117.4 22.4 232 9-281 184-432 (433)
227 KOG2139 WD40 repeat protein [G 99.6 6.2E-13 1.3E-17 104.8 20.4 281 32-352 101-426 (445)
228 KOG0974 WD-repeat protein WDR6 99.6 2E-13 4.4E-18 121.1 19.9 257 6-310 23-291 (967)
229 KOG2111 Uncharacterized conser 99.6 4.8E-12 1E-16 98.2 24.9 225 3-257 21-258 (346)
230 KOG1409 Uncharacterized conser 99.6 2.9E-13 6.4E-18 105.9 18.0 280 2-308 39-395 (404)
231 PRK02889 tolB translocation pr 99.6 8.8E-13 1.9E-17 114.4 22.8 235 9-282 176-425 (427)
232 PRK02889 tolB translocation pr 99.6 1.5E-12 3.4E-17 112.8 23.5 200 86-306 192-400 (427)
233 KOG4497 Uncharacterized conser 99.6 4.1E-12 8.9E-17 99.1 23.0 271 2-303 64-428 (447)
234 PF08662 eIF2A: Eukaryotic tra 99.6 3.9E-13 8.5E-18 102.8 17.4 151 93-257 9-181 (194)
235 KOG1409 Uncharacterized conser 99.6 8.2E-13 1.8E-17 103.4 18.3 252 20-309 15-272 (404)
236 PRK05137 tolB translocation pr 99.6 3.9E-12 8.6E-17 110.8 24.8 232 9-282 182-433 (435)
237 PRK05137 tolB translocation pr 99.6 2.9E-12 6.2E-17 111.7 23.9 187 86-297 198-396 (435)
238 KOG1354 Serine/threonine prote 99.5 1.2E-12 2.6E-17 102.5 18.0 250 1-257 39-361 (433)
239 PF08662 eIF2A: Eukaryotic tra 99.5 2.2E-12 4.7E-17 98.7 17.7 150 137-307 9-179 (194)
240 KOG2041 WD40 repeat protein [G 99.5 1.4E-12 2.9E-17 111.9 17.8 289 30-352 15-322 (1189)
241 KOG0974 WD-repeat protein WDR6 99.5 5.3E-13 1.1E-17 118.6 15.7 181 2-212 102-289 (967)
242 KOG1354 Serine/threonine prote 99.5 4.3E-12 9.2E-17 99.6 17.8 265 29-308 25-360 (433)
243 KOG4547 WD40 repeat-containing 99.5 1.5E-11 3.3E-16 103.1 22.1 186 1-212 7-221 (541)
244 KOG4497 Uncharacterized conser 99.5 7.7E-12 1.7E-16 97.6 18.2 263 2-307 23-391 (447)
245 TIGR02658 TTQ_MADH_Hv methylam 99.5 4.5E-10 9.7E-15 92.6 29.5 270 9-309 27-332 (352)
246 TIGR03300 assembly_YfgL outer 99.5 3.8E-11 8.1E-16 103.1 24.3 264 2-309 68-340 (377)
247 KOG1064 RAVE (regulator of V-A 99.5 4.8E-13 1E-17 125.0 12.6 189 28-257 2207-2400(2439)
248 TIGR02800 propeller_TolB tol-p 99.5 5.6E-11 1.2E-15 103.7 25.2 189 87-300 187-387 (417)
249 KOG4547 WD40 repeat-containing 99.5 1.4E-11 3.1E-16 103.3 19.8 195 99-309 3-222 (541)
250 COG2706 3-carboxymuconate cycl 99.5 9.9E-10 2.2E-14 87.4 28.6 274 8-308 15-322 (346)
251 TIGR02800 propeller_TolB tol-p 99.4 6.1E-11 1.3E-15 103.4 23.5 212 9-256 170-398 (417)
252 TIGR03300 assembly_YfgL outer 99.4 1.2E-10 2.6E-15 100.0 24.0 262 2-304 108-376 (377)
253 PRK00178 tolB translocation pr 99.4 4.2E-10 9.1E-15 98.3 26.6 197 86-307 195-404 (430)
254 PF02239 Cytochrom_D1: Cytochr 99.4 3.8E-10 8.3E-15 95.1 24.2 192 40-258 6-205 (369)
255 KOG0280 Uncharacterized conser 99.4 1.1E-10 2.5E-15 89.8 18.9 191 109-312 44-246 (339)
256 PRK00178 tolB translocation pr 99.4 2.9E-10 6.3E-15 99.3 23.8 232 10-282 180-428 (430)
257 KOG2321 WD40 repeat protein [G 99.4 3.2E-11 6.9E-16 100.9 15.8 189 2-214 148-346 (703)
258 KOG4190 Uncharacterized conser 99.4 4E-12 8.7E-17 106.0 10.0 250 22-306 728-987 (1034)
259 PRK04792 tolB translocation pr 99.4 6E-10 1.3E-14 97.2 23.7 232 10-282 199-447 (448)
260 KOG2041 WD40 repeat protein [G 99.3 2.3E-10 5E-15 98.5 19.7 272 1-308 28-338 (1189)
261 KOG1064 RAVE (regulator of V-A 99.3 4.7E-12 1E-16 118.6 10.2 191 86-308 2205-2399(2439)
262 PRK04792 tolB translocation pr 99.3 2.8E-09 6.1E-14 93.0 26.0 193 87-304 215-420 (448)
263 KOG4532 WD40-like repeat conta 99.3 5E-10 1.1E-14 85.2 17.9 192 1-214 86-285 (344)
264 KOG4714 Nucleoporin [Nuclear s 99.3 4E-11 8.6E-16 90.7 11.9 198 31-253 93-316 (319)
265 KOG2695 WD40 repeat protein [G 99.3 1.8E-11 3.9E-16 96.1 8.5 167 105-281 228-402 (425)
266 KOG4532 WD40-like repeat conta 99.3 3.6E-09 7.8E-14 80.7 20.1 239 38-307 83-331 (344)
267 KOG4190 Uncharacterized conser 99.2 9.4E-11 2E-15 98.1 11.5 269 2-303 750-1032(1034)
268 PRK11138 outer membrane biogen 99.2 7.8E-09 1.7E-13 89.2 23.3 263 2-306 123-393 (394)
269 COG5354 Uncharacterized protei 99.2 1.9E-08 4.1E-13 83.6 23.9 277 10-309 54-397 (561)
270 PF10282 Lactonase: Lactonase, 99.2 8.2E-08 1.8E-12 81.2 28.7 210 91-308 38-276 (345)
271 COG4946 Uncharacterized protei 99.2 1.7E-08 3.7E-13 83.2 23.3 133 9-166 341-480 (668)
272 PRK01029 tolB translocation pr 99.2 1.4E-08 2.9E-13 88.1 24.4 201 89-307 184-403 (428)
273 COG5170 CDC55 Serine/threonine 99.2 1.2E-09 2.5E-14 85.1 15.5 264 29-308 26-368 (460)
274 PRK01029 tolB translocation pr 99.2 1.9E-08 4.2E-13 87.1 25.0 241 9-282 165-425 (428)
275 KOG0309 Conserved WD40 repeat- 99.2 7.8E-11 1.7E-15 101.6 9.6 216 84-308 109-340 (1081)
276 COG2706 3-carboxymuconate cycl 99.2 2.3E-07 4.9E-12 74.2 28.2 235 48-309 15-276 (346)
277 KOG2315 Predicted translation 99.2 9.8E-09 2.1E-13 86.1 20.7 253 10-308 106-391 (566)
278 KOG4714 Nucleoporin [Nuclear s 99.2 2E-09 4.4E-14 81.6 14.8 217 23-256 29-255 (319)
279 PF13360 PQQ_2: PQQ-like domai 99.2 3.3E-08 7.2E-13 79.2 22.9 223 7-259 1-234 (238)
280 KOG2314 Translation initiation 99.2 1.2E-08 2.7E-13 85.5 20.3 260 9-307 282-573 (698)
281 COG5170 CDC55 Serine/threonine 99.2 8.5E-10 1.8E-14 85.9 12.4 251 1-255 40-367 (460)
282 PLN02919 haloacid dehalogenase 99.1 6.4E-08 1.4E-12 92.5 26.5 254 39-310 580-891 (1057)
283 PRK11138 outer membrane biogen 99.1 7.9E-08 1.7E-12 83.0 24.4 266 2-309 72-355 (394)
284 KOG1912 WD40 repeat protein [G 99.1 4.2E-08 9E-13 85.8 20.7 188 1-212 81-305 (1062)
285 KOG3914 WD repeat protein WDR4 99.1 4.6E-09 1E-13 84.5 13.6 160 92-259 65-227 (390)
286 PF04762 IKI3: IKI3 family; I 99.1 2.9E-07 6.3E-12 86.5 27.7 241 30-306 76-378 (928)
287 KOG3914 WD repeat protein WDR4 99.1 8.5E-09 1.8E-13 83.0 14.6 161 135-311 64-227 (390)
288 KOG1912 WD40 repeat protein [G 99.1 7.8E-08 1.7E-12 84.1 20.9 247 32-314 18-311 (1062)
289 KOG0882 Cyclophilin-related pe 99.0 7.6E-09 1.6E-13 84.6 13.4 236 1-258 22-308 (558)
290 KOG0309 Conserved WD40 repeat- 99.0 1.2E-09 2.6E-14 94.5 9.2 207 89-309 24-234 (1081)
291 PF04762 IKI3: IKI3 family; I 99.0 1E-06 2.3E-11 82.9 28.9 289 2-309 90-458 (928)
292 KOG2315 Predicted translation 99.0 2.6E-07 5.7E-12 77.8 21.9 234 8-282 145-411 (566)
293 PF15492 Nbas_N: Neuroblastoma 99.0 1.4E-06 3.1E-11 67.7 24.2 194 92-311 46-263 (282)
294 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.6E-06 3.4E-11 71.9 25.9 226 7-267 75-338 (352)
295 PLN02919 haloacid dehalogenase 99.0 6.4E-07 1.4E-11 85.9 26.9 249 2-258 583-891 (1057)
296 KOG2695 WD40 repeat protein [G 99.0 1.9E-09 4.1E-14 85.1 8.2 125 88-214 251-379 (425)
297 KOG2066 Vacuolar assembly/sort 99.0 6E-08 1.3E-12 85.1 17.7 177 1-212 51-234 (846)
298 PF00400 WD40: WD domain, G-be 98.9 3.3E-09 7.2E-14 58.1 5.9 38 262-305 2-39 (39)
299 KOG1275 PAB-dependent poly(A) 98.9 3.1E-08 6.8E-13 88.0 14.7 180 3-209 151-340 (1118)
300 PF13360 PQQ_2: PQQ-like domai 98.9 1.6E-07 3.4E-12 75.3 17.2 223 48-309 2-232 (238)
301 KOG2066 Vacuolar assembly/sort 98.9 5.7E-08 1.2E-12 85.3 15.1 186 89-307 39-233 (846)
302 PF08450 SGL: SMP-30/Gluconola 98.9 4.3E-06 9.3E-11 67.3 25.1 204 39-280 12-233 (246)
303 PRK04043 tolB translocation pr 98.9 8.7E-06 1.9E-10 70.4 27.2 190 91-307 189-398 (419)
304 KOG1275 PAB-dependent poly(A) 98.9 1.6E-07 3.5E-12 83.7 16.2 188 100-308 146-343 (1118)
305 KOG1645 RING-finger-containing 98.9 5.6E-07 1.2E-11 72.9 17.8 257 11-307 175-461 (463)
306 KOG1008 Uncharacterized conser 98.8 1.8E-09 3.9E-14 92.1 3.3 207 89-309 56-277 (783)
307 PF00400 WD40: WD domain, G-be 98.8 1.5E-08 3.2E-13 55.5 5.3 37 125-161 3-39 (39)
308 KOG3621 WD40 repeat-containing 98.8 1.9E-06 4E-11 75.0 20.3 136 1-151 47-187 (726)
309 COG4946 Uncharacterized protei 98.8 2.6E-06 5.6E-11 70.8 20.2 144 38-213 331-479 (668)
310 KOG2114 Vacuolar assembly/sort 98.8 2.8E-06 6E-11 75.6 21.1 215 31-276 27-261 (933)
311 PRK04043 tolB translocation pr 98.8 1.2E-05 2.6E-10 69.5 24.0 209 10-257 170-402 (419)
312 KOG2314 Translation initiation 98.8 5.8E-06 1.3E-10 70.0 21.0 268 2-308 225-526 (698)
313 cd00216 PQQ_DH Dehydrogenases 98.7 1.2E-05 2.6E-10 71.3 24.0 274 2-311 64-428 (488)
314 PF08450 SGL: SMP-30/Gluconola 98.7 7E-05 1.5E-09 60.3 26.1 187 2-212 15-214 (246)
315 COG5354 Uncharacterized protei 98.7 4.2E-06 9.2E-11 70.0 18.9 256 13-308 16-307 (561)
316 PF08596 Lgl_C: Lethal giant l 98.7 1.2E-05 2.5E-10 68.5 21.5 263 31-307 3-335 (395)
317 KOG1920 IkappaB kinase complex 98.7 2.6E-05 5.6E-10 72.4 23.9 223 30-284 69-347 (1265)
318 KOG0882 Cyclophilin-related pe 98.7 4.9E-07 1.1E-11 74.3 11.8 209 87-310 7-234 (558)
319 PF06433 Me-amine-dh_H: Methyl 98.7 0.00011 2.4E-09 59.9 24.9 272 9-309 17-322 (342)
320 KOG2114 Vacuolar assembly/sort 98.6 5E-06 1.1E-10 74.1 18.3 201 91-308 27-244 (933)
321 KOG1832 HIV-1 Vpr-binding prot 98.6 3.8E-08 8.2E-13 87.4 5.0 199 79-309 1091-1293(1516)
322 PF07433 DUF1513: Protein of u 98.6 7.2E-05 1.6E-09 60.2 22.9 225 39-298 17-277 (305)
323 KOG4649 PQQ (pyrrolo-quinoline 98.6 8.2E-05 1.8E-09 57.4 21.9 100 1-122 25-126 (354)
324 PF15492 Nbas_N: Neuroblastoma 98.6 1.7E-05 3.7E-10 61.9 18.2 188 36-258 52-262 (282)
325 KOG1832 HIV-1 Vpr-binding prot 98.6 4.9E-08 1.1E-12 86.7 5.0 199 19-257 1091-1293(1516)
326 KOG1920 IkappaB kinase complex 98.6 1E-05 2.2E-10 74.9 19.1 205 89-308 68-323 (1265)
327 cd00216 PQQ_DH Dehydrogenases 98.5 5.4E-05 1.2E-09 67.2 22.0 247 2-261 113-430 (488)
328 KOG1008 Uncharacterized conser 98.5 5.3E-08 1.1E-12 83.4 2.4 193 1-212 72-276 (783)
329 KOG3617 WD40 and TPR repeat-co 98.5 8E-06 1.7E-10 72.8 15.7 70 92-163 62-131 (1416)
330 PF08553 VID27: VID27 cytoplas 98.5 4.4E-05 9.5E-10 69.7 20.2 139 4-163 499-647 (794)
331 PF08596 Lgl_C: Lethal giant l 98.4 0.00023 4.9E-09 60.8 21.0 221 91-317 3-300 (395)
332 PF11768 DUF3312: Protein of u 98.3 3.8E-06 8.2E-11 72.0 9.2 75 87-165 257-331 (545)
333 KOG2444 WD40 repeat protein [G 98.3 1.2E-06 2.7E-11 65.8 5.6 149 147-316 32-186 (238)
334 PRK02888 nitrous-oxide reducta 98.3 0.00069 1.5E-08 60.0 23.0 76 179-256 320-405 (635)
335 KOG3621 WD40 repeat-containing 98.3 1.1E-05 2.3E-10 70.5 11.8 165 88-256 32-198 (726)
336 KOG1645 RING-finger-containing 98.3 2.3E-05 5E-10 63.9 12.7 86 79-167 183-270 (463)
337 PF07433 DUF1513: Protein of u 98.3 0.00073 1.6E-08 54.6 20.9 179 11-213 30-249 (305)
338 PF11768 DUF3312: Protein of u 98.3 0.0022 4.8E-08 55.6 24.3 69 228-308 262-330 (545)
339 KOG3617 WD40 and TPR repeat-co 98.2 0.00014 2.9E-09 65.4 16.2 109 93-211 19-131 (1416)
340 KOG4441 Proteins containing BT 98.1 0.00057 1.2E-08 61.6 19.3 227 2-258 288-549 (571)
341 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0057 1.2E-07 54.9 25.1 165 2-167 123-337 (527)
342 PF03178 CPSF_A: CPSF A subuni 98.1 0.0018 3.9E-08 54.5 20.8 183 111-308 2-203 (321)
343 PHA02713 hypothetical protein; 98.1 0.0011 2.3E-08 60.0 20.2 149 100-258 351-536 (557)
344 PF03178 CPSF_A: CPSF A subuni 98.1 0.0012 2.7E-08 55.4 19.2 177 9-208 62-262 (321)
345 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0084 1.8E-07 53.8 27.1 191 2-215 72-337 (527)
346 KOG4441 Proteins containing BT 98.0 0.0019 4.1E-08 58.3 20.1 225 39-303 285-537 (571)
347 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0066 1.4E-07 51.8 22.1 260 8-282 22-338 (353)
348 PHA02713 hypothetical protein; 98.0 0.00068 1.5E-08 61.2 16.6 188 100-307 303-533 (557)
349 KOG4640 Anaphase-promoting com 97.9 7.1E-05 1.5E-09 64.8 8.2 95 88-188 19-114 (665)
350 smart00320 WD40 WD40 repeats. 97.9 3.8E-05 8.2E-10 41.1 4.5 38 262-305 3-40 (40)
351 PF04841 Vps16_N: Vps16, N-ter 97.8 0.0097 2.1E-07 51.6 20.3 171 112-307 62-246 (410)
352 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0043 9.2E-08 41.8 13.4 105 182-303 2-110 (111)
353 KOG2079 Vacuolar assembly/sort 97.7 0.00088 1.9E-08 62.0 13.3 110 31-163 91-203 (1206)
354 PF04053 Coatomer_WDAD: Coatom 97.7 0.0044 9.5E-08 53.9 17.1 144 132-308 31-174 (443)
355 PRK02888 nitrous-oxide reducta 97.7 0.013 2.8E-07 52.4 19.7 108 98-212 285-405 (635)
356 KOG4649 PQQ (pyrrolo-quinoline 97.7 0.013 2.9E-07 45.7 20.3 108 39-170 23-130 (354)
357 PF04053 Coatomer_WDAD: Coatom 97.7 0.024 5.3E-07 49.4 21.3 221 31-308 34-263 (443)
358 PF08553 VID27: VID27 cytoplas 97.7 0.0017 3.7E-08 59.8 14.5 144 101-254 493-646 (794)
359 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0039 8.4E-08 42.0 12.5 87 2-114 18-109 (111)
360 PF00780 CNH: CNH domain; Int 97.7 0.02 4.4E-07 46.9 25.8 240 2-269 10-265 (275)
361 PF00780 CNH: CNH domain; Int 97.7 0.022 4.8E-07 46.7 25.1 230 36-309 4-257 (275)
362 PF06977 SdiA-regulated: SdiA- 97.7 0.019 4.1E-07 45.7 20.0 204 86-304 18-247 (248)
363 smart00320 WD40 WD40 repeats. 97.6 0.00011 2.5E-09 39.2 4.0 37 125-161 4-40 (40)
364 PHA03098 kelch-like protein; P 97.6 0.029 6.4E-07 50.9 21.3 149 100-258 342-514 (534)
365 COG3391 Uncharacterized conser 97.5 0.053 1.2E-06 46.8 21.4 194 38-258 84-286 (381)
366 KOG2444 WD40 repeat protein [G 97.5 0.00043 9.4E-09 52.6 6.4 105 38-163 69-177 (238)
367 KOG2395 Protein involved in va 97.4 0.049 1.1E-06 47.1 18.6 144 2-163 349-500 (644)
368 PHA02790 Kelch-like protein; P 97.4 0.029 6.3E-07 50.0 18.1 185 100-307 271-470 (480)
369 PHA03098 kelch-like protein; P 97.4 0.036 7.8E-07 50.4 19.2 188 100-307 294-511 (534)
370 PF10168 Nup88: Nuclear pore c 97.3 0.091 2E-06 48.8 20.4 75 91-166 86-182 (717)
371 COG3386 Gluconolactonase [Carb 97.3 0.08 1.7E-06 43.8 20.3 118 90-211 111-243 (307)
372 PF05694 SBP56: 56kDa selenium 97.2 0.1 2.2E-06 44.5 20.2 194 2-216 91-347 (461)
373 COG3490 Uncharacterized protei 97.2 0.039 8.5E-07 43.8 14.3 57 95-152 119-180 (366)
374 COG0823 TolB Periplasmic compo 97.2 0.02 4.3E-07 49.8 14.2 157 89-258 192-361 (425)
375 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.15 3.3E-06 43.6 21.3 240 48-323 22-328 (353)
376 KOG4640 Anaphase-promoting com 97.1 0.0031 6.7E-08 55.1 8.2 68 230-308 25-93 (665)
377 PRK13616 lipoprotein LpqB; Pro 97.1 0.22 4.8E-06 45.4 20.9 150 92-251 399-564 (591)
378 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0035 7.6E-08 35.2 5.4 32 88-119 10-41 (47)
379 PF02897 Peptidase_S9_N: Proly 97.0 0.22 4.8E-06 43.6 24.5 203 91-307 125-357 (414)
380 PF04841 Vps16_N: Vps16, N-ter 97.0 0.23 4.9E-06 43.3 24.9 178 90-282 81-270 (410)
381 PF12894 Apc4_WD40: Anaphase-p 96.9 0.0044 9.6E-08 34.7 5.4 30 133-162 11-40 (47)
382 PHA02790 Kelch-like protein; P 96.9 0.24 5.3E-06 44.2 19.2 145 100-257 318-472 (480)
383 PLN02153 epithiospecifier prot 96.9 0.22 4.7E-06 42.4 22.0 151 100-258 85-287 (341)
384 COG3391 Uncharacterized conser 96.9 0.24 5.2E-06 42.8 20.9 197 92-308 76-284 (381)
385 KOG2079 Vacuolar assembly/sort 96.9 0.0074 1.6E-07 56.3 9.2 107 192-308 98-204 (1206)
386 PF02897 Peptidase_S9_N: Proly 96.9 0.28 6E-06 43.1 26.8 220 34-282 130-381 (414)
387 PF06977 SdiA-regulated: SdiA- 96.8 0.18 3.9E-06 40.3 21.5 168 24-212 16-202 (248)
388 PF08728 CRT10: CRT10; InterP 96.8 0.32 7E-06 44.7 18.5 176 30-210 41-245 (717)
389 PF06433 Me-amine-dh_H: Methyl 96.8 0.26 5.5E-06 40.9 18.8 187 7-214 105-323 (342)
390 PF14727 PHTB1_N: PTHB1 N-term 96.7 0.33 7.1E-06 42.0 27.6 285 2-312 40-365 (418)
391 PRK13616 lipoprotein LpqB; Pro 96.7 0.34 7.4E-06 44.3 18.0 103 90-207 350-472 (591)
392 COG5276 Uncharacterized conser 96.7 0.26 5.5E-06 39.6 27.0 268 3-307 100-369 (370)
393 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 0.39 8.5E-06 41.5 23.5 115 31-161 5-144 (415)
394 PF14727 PHTB1_N: PTHB1 N-term 96.6 0.21 4.5E-06 43.2 15.5 155 144-310 36-207 (418)
395 TIGR03548 mutarot_permut cycli 96.6 0.36 7.8E-06 40.7 20.0 65 100-165 123-196 (323)
396 KOG2395 Protein involved in va 96.5 0.092 2E-06 45.5 12.5 148 143-308 343-501 (644)
397 TIGR03547 muta_rot_YjhT mutatr 96.5 0.47 1E-05 40.5 22.0 43 111-154 168-210 (346)
398 COG5276 Uncharacterized conser 96.4 0.38 8.3E-06 38.7 23.1 158 90-258 87-244 (370)
399 TIGR03074 PQQ_membr_DH membran 96.3 0.99 2.1E-05 42.7 20.6 207 38-261 193-483 (764)
400 KOG1897 Damage-specific DNA bi 96.3 1 2.2E-05 42.6 22.8 190 103-309 686-900 (1096)
401 PLN02193 nitrile-specifier pro 96.3 0.8 1.7E-05 40.9 22.4 150 100-258 228-413 (470)
402 KOG1897 Damage-specific DNA bi 96.2 1.1 2.4E-05 42.3 21.3 157 34-211 494-659 (1096)
403 PF12234 Rav1p_C: RAVE protein 96.2 0.25 5.4E-06 44.9 14.2 116 91-211 31-156 (631)
404 PF08728 CRT10: CRT10; InterP 96.2 0.56 1.2E-05 43.2 16.4 126 180-307 101-246 (717)
405 COG0823 TolB Periplasmic compo 96.2 0.38 8.3E-06 42.0 14.8 149 131-300 190-349 (425)
406 PRK14131 N-acetylneuraminic ac 96.1 0.79 1.7E-05 39.6 22.0 42 111-153 189-230 (376)
407 COG3386 Gluconolactonase [Carb 96.1 0.68 1.5E-05 38.5 21.1 220 41-298 39-277 (307)
408 TIGR03118 PEPCTERM_chp_1 conse 96.0 0.67 1.5E-05 37.7 20.0 210 92-308 25-280 (336)
409 KOG4499 Ca2+-binding protein R 95.9 0.58 1.3E-05 36.4 17.8 139 133-282 108-264 (310)
410 PF14761 HPS3_N: Hermansky-Pud 95.9 0.56 1.2E-05 36.1 14.5 148 102-254 29-213 (215)
411 PF12234 Rav1p_C: RAVE protein 95.8 0.32 6.9E-06 44.3 12.9 74 134-210 30-103 (631)
412 PF14870 PSII_BNR: Photosynthe 95.6 1.1 2.3E-05 37.2 23.4 158 131-304 142-301 (302)
413 PF14870 PSII_BNR: Photosynthe 95.6 1.1 2.3E-05 37.1 22.6 192 92-303 64-257 (302)
414 TIGR03547 muta_rot_YjhT mutatr 95.6 1.3 2.8E-05 37.8 22.7 55 100-154 63-128 (346)
415 PF07569 Hira: TUP1-like enhan 95.4 0.19 4.1E-06 39.5 9.3 86 30-123 13-99 (219)
416 PF07569 Hira: TUP1-like enhan 95.4 0.15 3.3E-06 40.0 8.6 73 229-308 14-96 (219)
417 PRK14131 N-acetylneuraminic ac 95.2 1.8 3.9E-05 37.4 21.9 55 100-154 84-149 (376)
418 TIGR02604 Piru_Ver_Nterm putat 95.2 1.8 3.8E-05 37.3 15.9 150 134-298 14-204 (367)
419 PF14781 BBS2_N: Ciliary BBSom 95.2 0.68 1.5E-05 32.6 12.0 118 138-257 3-127 (136)
420 PF14583 Pectate_lyase22: Olig 95.2 1.7 3.7E-05 37.0 27.2 271 1-308 50-382 (386)
421 PF10313 DUF2415: Uncharacteri 95.2 0.1 2.2E-06 28.4 4.9 30 91-120 2-34 (43)
422 PF14655 RAB3GAP2_N: Rab3 GTPa 95.2 1.9 4.2E-05 37.4 17.9 91 94-189 6-118 (415)
423 PF10313 DUF2415: Uncharacteri 95.2 0.13 2.9E-06 28.0 5.3 31 134-164 1-34 (43)
424 KOG1900 Nuclear pore complex, 95.1 1.2 2.5E-05 43.6 14.7 147 5-165 95-274 (1311)
425 COG3204 Uncharacterized protei 94.9 1.7 3.6E-05 35.2 17.7 166 86-257 82-265 (316)
426 PLN02193 nitrile-specifier pro 94.9 2.7 5.9E-05 37.6 18.9 152 100-259 175-355 (470)
427 KOG1916 Nuclear protein, conta 94.9 0.087 1.9E-06 48.7 6.5 117 93-212 184-324 (1283)
428 COG4590 ABC-type uncharacteriz 94.9 0.23 5E-06 42.4 8.5 170 127-311 214-390 (733)
429 KOG1916 Nuclear protein, conta 94.8 0.091 2E-06 48.6 6.6 190 110-307 110-323 (1283)
430 PF05694 SBP56: 56kDa selenium 94.8 1.5 3.3E-05 37.7 13.2 116 7-122 220-345 (461)
431 KOG3630 Nuclear pore complex, 94.8 0.68 1.5E-05 44.4 11.9 144 134-282 101-254 (1405)
432 KOG2280 Vacuolar assembly/sort 94.7 3.6 7.8E-05 38.0 16.6 177 111-308 64-247 (829)
433 PF05096 Glu_cyclase_2: Glutam 94.4 2.2 4.7E-05 34.3 19.5 188 91-296 46-250 (264)
434 PF05096 Glu_cyclase_2: Glutam 94.4 2.2 4.7E-05 34.3 14.9 129 7-152 108-249 (264)
435 TIGR02604 Piru_Ver_Nterm putat 94.2 2.4 5.3E-05 36.5 13.7 105 91-200 15-142 (367)
436 KOG2377 Uncharacterized conser 94.0 3.7 8E-05 35.5 14.7 139 137-283 26-165 (657)
437 PLN02153 epithiospecifier prot 94.0 3.4 7.4E-05 35.2 20.7 28 100-127 137-175 (341)
438 KOG3630 Nuclear pore complex, 93.9 0.92 2E-05 43.6 11.0 141 44-198 119-260 (1405)
439 KOG2247 WD40 repeat-containing 93.9 0.0034 7.3E-08 53.4 -3.9 222 32-281 77-305 (615)
440 PF15390 DUF4613: Domain of un 93.5 5.4 0.00012 35.8 14.9 121 87-212 54-187 (671)
441 COG3204 Uncharacterized protei 93.5 3.5 7.5E-05 33.5 17.0 166 27-212 83-264 (316)
442 PF03022 MRJP: Major royal jel 93.3 4 8.8E-05 33.7 18.8 153 10-164 35-216 (287)
443 KOG2280 Vacuolar assembly/sort 93.1 7.4 0.00016 36.1 17.4 175 10-212 65-247 (829)
444 TIGR03074 PQQ_membr_DH membran 92.7 9.5 0.00021 36.4 21.1 64 2-65 197-286 (764)
445 COG3490 Uncharacterized protei 92.6 1.3 2.9E-05 35.6 8.6 109 184-304 72-186 (366)
446 KOG1898 Splicing factor 3b, su 92.6 3.5 7.6E-05 39.5 12.5 140 157-308 855-1005(1205)
447 KOG2247 WD40 repeat-containing 92.5 0.02 4.3E-07 49.0 -1.5 157 137-314 38-205 (615)
448 PF10168 Nup88: Nuclear pore c 92.2 11 0.00023 35.8 20.0 81 133-214 84-182 (717)
449 PF10647 Gmad1: Lipoprotein Lp 92.2 5.4 0.00012 32.3 17.2 153 135-300 25-188 (253)
450 COG5167 VID27 Protein involved 91.9 3.3 7.2E-05 36.4 10.7 141 3-163 484-632 (776)
451 PF15390 DUF4613: Domain of un 91.9 9.3 0.0002 34.5 15.7 157 86-257 16-188 (671)
452 TIGR03548 mutarot_permut cycli 91.8 7.2 0.00016 32.9 23.4 107 100-213 72-196 (323)
453 PF08801 Nucleoporin_N: Nup133 91.7 7.7 0.00017 34.2 13.5 31 134-164 190-220 (422)
454 PF07995 GSDH: Glucose / Sorbo 91.6 7.6 0.00017 32.9 15.7 107 92-202 4-134 (331)
455 KOG4460 Nuclear pore complex, 91.5 6 0.00013 35.0 11.8 77 91-167 105-202 (741)
456 PF14781 BBS2_N: Ciliary BBSom 91.3 3.9 8.4E-05 29.0 11.9 112 94-212 3-126 (136)
457 PRK10115 protease 2; Provision 90.8 15 0.00033 34.8 24.0 199 90-307 127-344 (686)
458 PF10647 Gmad1: Lipoprotein Lp 90.8 7.7 0.00017 31.4 21.8 112 91-204 67-188 (253)
459 COG4257 Vgb Streptogramin lyas 90.5 8.1 0.00018 31.2 13.8 191 92-308 64-263 (353)
460 KOG1900 Nuclear pore complex, 90.4 9 0.00019 38.0 13.0 75 133-212 178-273 (1311)
461 COG1520 FOG: WD40-like repeat 90.3 11 0.00024 32.5 19.0 66 2-67 71-139 (370)
462 PF07995 GSDH: Glucose / Sorbo 90.0 11 0.00024 32.0 24.0 60 237-302 271-330 (331)
463 COG5167 VID27 Protein involved 89.6 14 0.00031 32.7 14.9 144 100-255 478-632 (776)
464 PF12657 TFIIIC_delta: Transcr 89.1 3.9 8.6E-05 30.8 8.2 37 272-308 86-122 (173)
465 PF14583 Pectate_lyase22: Olig 89.0 14 0.0003 31.8 24.1 244 15-298 16-303 (386)
466 COG4590 ABC-type uncharacteriz 88.9 6.6 0.00014 34.1 9.9 164 87-257 218-388 (733)
467 PF10395 Utp8: Utp8 family; I 88.6 20 0.00044 33.2 21.8 164 132-308 128-306 (670)
468 COG5308 NUP170 Nuclear pore co 88.5 24 0.00052 33.8 13.6 147 6-165 99-277 (1263)
469 PF11715 Nup160: Nucleoporin N 88.2 8.2 0.00018 35.4 11.2 69 99-167 156-252 (547)
470 PF14761 HPS3_N: Hermansky-Pud 88.2 11 0.00023 29.4 16.3 112 34-165 22-165 (215)
471 PF07250 Glyoxal_oxid_N: Glyox 88.0 12 0.00027 29.9 12.0 138 113-257 48-199 (243)
472 PF12341 DUF3639: Protein of u 87.9 2 4.3E-05 20.7 3.7 26 30-55 2-27 (27)
473 PF11715 Nup160: Nucleoporin N 87.6 3.8 8.2E-05 37.6 8.7 85 38-123 157-252 (547)
474 TIGR03606 non_repeat_PQQ dehyd 87.5 20 0.00043 31.8 12.9 56 90-145 30-90 (454)
475 COG1520 FOG: WD40-like repeat 87.3 18 0.0004 31.2 20.1 195 38-259 67-272 (370)
476 PF12768 Rax2: Cortical protei 87.2 8.9 0.00019 31.5 9.6 97 111-211 16-123 (281)
477 KOG4499 Ca2+-binding protein R 87.1 13 0.00028 29.3 17.0 139 89-238 108-264 (310)
478 PF13449 Phytase-like: Esteras 86.8 18 0.00039 30.6 16.8 166 134-308 20-250 (326)
479 TIGR03606 non_repeat_PQQ dehyd 86.7 22 0.00048 31.6 12.5 113 134-246 30-166 (454)
480 PF13570 PQQ_3: PQQ-like domai 86.5 3.4 7.3E-05 22.0 4.8 24 34-57 16-39 (40)
481 COG5290 IkappaB kinase complex 86.3 30 0.00066 32.7 13.6 31 88-118 111-141 (1243)
482 KOG1983 Tomosyn and related SN 85.6 21 0.00046 35.4 12.6 230 87-346 33-304 (993)
483 COG3292 Predicted periplasmic 85.2 29 0.00062 31.4 15.5 135 2-160 178-315 (671)
484 PF08801 Nucleoporin_N: Nup133 84.9 27 0.00059 30.8 14.2 30 273-308 191-220 (422)
485 KOG1898 Splicing factor 3b, su 84.5 43 0.00093 32.8 14.7 72 89-160 582-668 (1205)
486 COG3823 Glutamine cyclotransfe 84.2 17 0.00038 28.1 11.7 179 100-296 55-248 (262)
487 PF10433 MMS1_N: Mono-function 83.8 34 0.00073 31.1 23.2 254 2-281 225-503 (504)
488 PF01011 PQQ: PQQ enzyme repea 83.8 4.7 0.0001 21.2 4.7 23 239-261 2-24 (38)
489 PRK13684 Ycf48-like protein; P 83.7 26 0.00057 29.8 18.7 156 133-306 172-330 (334)
490 PF12768 Rax2: Cortical protei 82.8 25 0.00055 28.9 13.8 118 48-189 15-146 (281)
491 smart00564 PQQ beta-propeller 81.4 4.3 9.4E-05 20.2 3.7 25 39-63 6-30 (33)
492 TIGR02276 beta_rpt_yvtn 40-res 80.9 6.6 0.00014 20.9 4.8 24 99-122 1-25 (42)
493 PF03088 Str_synth: Strictosid 78.6 16 0.00034 23.9 6.9 42 107-151 33-74 (89)
494 PF13449 Phytase-like: Esteras 78.5 40 0.00087 28.6 17.0 62 91-153 86-166 (326)
495 PF02333 Phytase: Phytase; In 78.3 44 0.00095 28.9 20.4 206 98-305 65-288 (381)
496 KOG3522 Predicted guanine nucl 77.9 14 0.00031 34.8 8.0 154 146-312 548-702 (925)
497 KOG1896 mRNA cleavage and poly 77.7 81 0.0018 31.7 28.8 148 146-307 1047-1213(1366)
498 COG5290 IkappaB kinase complex 77.1 15 0.00033 34.5 7.8 120 75-199 228-356 (1243)
499 smart00036 CNH Domain found in 77.0 43 0.00093 28.0 23.4 233 40-310 14-273 (302)
500 PLN00033 photosystem II stabil 76.4 53 0.0011 28.8 15.8 157 89-252 238-396 (398)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-49 Score=309.36 Aligned_cols=294 Identities=25% Similarity=0.364 Sum_probs=251.7
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
.|++|+.|.++|+||+.+..+..+.++|...|.|+++ |+..||+|+.||+|++||..+++++..
T Consensus 129 ~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~-------------- 194 (480)
T KOG0271|consen 129 RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR-------------- 194 (480)
T ss_pred eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--------------
Confidence 3899999999999999999999999999999999976 788999999999999999998876542
Q ss_pred ecCCCccccCCCceEEEEEeC-----CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC
Q 038537 79 FSKSNTQQQHRDCVSCMAFYH-----AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS 153 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 153 (358)
.+.+|...|++++|.| ..++|++++.||.|+|||+..+. ++..+.+|+.+|+|+.|-.+ .+|++|+.
T Consensus 195 -----~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~--~~~~lsgHT~~VTCvrwGG~-gliySgS~ 266 (480)
T KOG0271|consen 195 -----ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT--CVRTLSGHTASVTCVRWGGE-GLIYSGSQ 266 (480)
T ss_pred -----cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce--EEEEeccCccceEEEEEcCC-ceEEecCC
Confidence 5589999999999976 56799999999999999999888 88899999999999999743 58999999
Q ss_pred CCcEEEEEceecCCcceeeeeecccCCceeEEEEeec----------------------------------CCCcEEEEe
Q 038537 154 DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSF----------------------------------FDNYFLYSG 199 (358)
Q Consensus 154 dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------------------------------~~~~~l~~~ 199 (358)
|++|++|+... ..+...+++|...|+.++.+.. ..+..|++|
T Consensus 267 DrtIkvw~a~d----G~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 267 DRTIKVWRALD----GKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred CceEEEEEccc----hhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence 99999999854 3456677889999999988721 123469999
Q ss_pred ecCCcEEEEEccCCcCCccccceeeccccee--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEE
Q 038537 200 SSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCL 277 (358)
Q Consensus 200 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i 277 (358)
+.|.++.+|+..... +....+.+|..-| ..|+|+++++++++.|..|++||.+++ +.+.++++|-++|..+
T Consensus 343 sDd~tlflW~p~~~k---kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG----k~lasfRGHv~~VYqv 415 (480)
T KOG0271|consen 343 SDDFTLFLWNPFKSK---KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG----KFLASFRGHVAAVYQV 415 (480)
T ss_pred cCCceEEEecccccc---cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc----chhhhhhhccceeEEE
Confidence 999999999976533 3344477887766 567889999999999999999999999 7899999999999999
Q ss_pred EeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCCccceeeecccCCCcccccccchhhhh
Q 038537 278 AASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNSKTTTTKMDYEMSPVLSPSWVEKKMK 352 (358)
Q Consensus 278 ~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~W~~~~~~ 352 (358)
+|+.| .++|++||.|.++++|+++. ......+.+|. ..|+.++|+++..+
T Consensus 416 awsaD------sRLlVS~SkDsTLKvw~V~t------kKl~~DLpGh~-------------DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 416 AWSAD------SRLLVSGSKDSTLKVWDVRT------KKLKQDLPGHA-------------DEVFAVDWSPDGQR 465 (480)
T ss_pred EeccC------ccEEEEcCCCceEEEEEeee------eeecccCCCCC-------------ceEEEEEecCCCce
Confidence 99999 88999999999999999994 34444555554 44888889887654
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-49 Score=310.82 Aligned_cols=263 Identities=26% Similarity=0.378 Sum_probs=239.0
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec----CCEEEEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH----DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
.|+|||.+|.++||+..+...+..+.+|...|.++.|+ +..++||+.||++++|++++...+.
T Consensus 189 ~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~------------- 255 (459)
T KOG0272|consen 189 HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ------------- 255 (459)
T ss_pred eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh-------------
Confidence 48999999999999999999999999999999999884 3489999999999999999765543
Q ss_pred eeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
.+.+|...|..++|+|+|++|+|++.|.+-++||+.++. .+....+|...|.+++|.|||.++++|+-|..
T Consensus 256 -------~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~--ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 256 -------DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS--ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL 326 (459)
T ss_pred -------hhhcchhhheeeeecCCCceeeecccccchhhcccccch--hhHhhcccccccceeEecCCCceeeccCccch
Confidence 457999999999999999999999999999999999998 77778899999999999999999999999999
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEe
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLV 234 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~ 234 (358)
-+|||++++.. ...+.+|..+|.+++|+| +|..|++|+.|++++|||++... ....+.+|..-| ++++
T Consensus 327 ~RvWDlRtgr~----im~L~gH~k~I~~V~fsP--NGy~lATgs~Dnt~kVWDLR~r~----~ly~ipAH~nlVS~Vk~~ 396 (459)
T KOG0272|consen 327 GRVWDLRTGRC----IMFLAGHIKEILSVAFSP--NGYHLATGSSDNTCKVWDLRMRS----ELYTIPAHSNLVSQVKYS 396 (459)
T ss_pred hheeecccCcE----EEEecccccceeeEeECC--CceEEeecCCCCcEEEeeecccc----cceecccccchhhheEec
Confidence 99999987764 456778999999999999 99999999999999999999843 355577888777 4556
Q ss_pred e-eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 235 A-IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 235 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
| .|.+|++++.|++++||...+. .++..+.||.+.|.++..+++ +.+++|++.|.++++|.
T Consensus 397 p~~g~fL~TasyD~t~kiWs~~~~----~~~ksLaGHe~kV~s~Dis~d------~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 397 PQEGYFLVTASYDNTVKIWSTRTW----SPLKSLAGHEGKVISLDISPD------SQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCCeEEEEcccCcceeeecCCCc----ccchhhcCCccceEEEEeccC------CceEEEeccCceeeecc
Confidence 6 5799999999999999999998 789999999999999999999 88999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-45 Score=285.23 Aligned_cols=262 Identities=26% Similarity=0.441 Sum_probs=231.1
Q ss_pred EEeeeCCCcEEEEeCCCceee-eeeeecccceEEEEec-------CCEEEEEeCCceEEEEecccccccccccccccCCC
Q 038537 2 VFTGSSSTRIRVWRQPDCVER-GFIKARHGEVRAILAH-------DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~-~~~~~h~~~v~~i~~~-------~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
||+|+.||+|++||.++++++ ..+.+|...|++++|. ..+|++++.||.|+|||+..+.++.
T Consensus 172 iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~---------- 241 (480)
T KOG0271|consen 172 IASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR---------- 241 (480)
T ss_pred hhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE----------
Confidence 799999999999999887764 7789999999999983 3589999999999999999876653
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEc-----------
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVN----------- 142 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~----------- 142 (358)
.+.+|+.+|+|+.|--+ .+|++|+.|++|++|+...+. +.+.+++|...|+.++.+
T Consensus 242 ----------~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~--~~r~lkGHahwvN~lalsTdy~LRtgaf~ 308 (480)
T KOG0271|consen 242 ----------TLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGK--LCRELKGHAHWVNHLALSTDYVLRTGAFD 308 (480)
T ss_pred ----------EeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchh--HHHhhcccchheeeeeccchhhhhccccc
Confidence 45799999999999744 489999999999999999988 889999999999999877
Q ss_pred CCC-------------------------CEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEE
Q 038537 143 QDD-------------------------GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLY 197 (358)
Q Consensus 143 ~~~-------------------------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 197 (358)
|.+ ..+++|+.|.++.+|+.. ...+....+.+|...|+.+.|+| |+.+++
T Consensus 309 ~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~---~~kkpi~rmtgHq~lVn~V~fSP--d~r~IA 383 (480)
T KOG0271|consen 309 HTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF---KSKKPITRMTGHQALVNHVSFSP--DGRYIA 383 (480)
T ss_pred cccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc---ccccchhhhhchhhheeeEEECC--CccEEE
Confidence 222 349999999999999875 33345567788999999999999 999999
Q ss_pred EeecCCcEEEEEccCCcCCccccceeecccceeEEEee--eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceE
Q 038537 198 SGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA--IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVR 275 (358)
Q Consensus 198 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 275 (358)
+++.|..|++||.++ .++...+.+|...|..+.+ |.++|++|+.|.++++||+++. +....+.+|...|.
T Consensus 384 SaSFDkSVkLW~g~t----Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk----Kl~~DLpGh~DEVf 455 (480)
T KOG0271|consen 384 SASFDKSVKLWDGRT----GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK----KLKQDLPGHADEVF 455 (480)
T ss_pred EeecccceeeeeCCC----cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee----eecccCCCCCceEE
Confidence 999999999999998 4556668899999977665 6779999999999999999998 67888999999999
Q ss_pred EEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 276 CLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 276 ~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
++.|+|| |..+++|+.|..+++|.
T Consensus 456 ~vDwspD------G~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 456 AVDWSPD------GQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEecCC------CceeecCCCceEEEeec
Confidence 9999999 89999999999999995
No 4
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-42 Score=254.83 Aligned_cols=274 Identities=21% Similarity=0.336 Sum_probs=231.1
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|+++++|.+||+|...+|.+..++....+.|+.+.. ++..|++++. -.||+||+++.....
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~P--------------- 75 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNP--------------- 75 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCc---------------
Confidence 5899999999999999999999999988899998755 6677777775 589999999876531
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
..++.+|...|+.+.|..+|+.+++|++||+++|||++... +.+. ..|.++|+++..+|+...|++|..+|.|+
T Consensus 76 ---v~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~-~~~~spVn~vvlhpnQteLis~dqsg~ir 149 (311)
T KOG0315|consen 76 ---VATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRN-YQHNSPVNTVVLHPNQTELISGDQSGNIR 149 (311)
T ss_pred ---eeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc--cchh-ccCCCCcceEEecCCcceEEeecCCCcEE
Confidence 12558999999999999999999999999999999999865 4443 45779999999999999999999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcC--CccccceeecccceeE--EEe
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSG--GFNHGGFLQGHCFAVL--CLV 234 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~--~~~ 234 (358)
+||+.+.....++.. .....|.++.+.| +|.+++.+...|..++|++-.... .......++.|...++ -++
T Consensus 150 vWDl~~~~c~~~liP---e~~~~i~sl~v~~--dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS 224 (311)
T KOG0315|consen 150 VWDLGENSCTHELIP---EDDTSIQSLTVMP--DGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS 224 (311)
T ss_pred EEEccCCccccccCC---CCCcceeeEEEcC--CCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC
Confidence 999987654444432 2457899999998 999999999999999999876322 2334445667776664 458
Q ss_pred eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 235 AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 235 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
|++++|++++.|.+++||+..+- .+....+.+|...+.+.+||.+ +++|+||+.|+.+++|+++..+
T Consensus 225 Pd~k~lat~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~d------g~YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 225 PDVKYLATCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSAD------GEYLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred CCCcEEEeecCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccC------ccEEEecCCCCceeecccccCc
Confidence 99999999999999999999876 3566788899999999999999 8999999999999999998643
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.5e-43 Score=278.77 Aligned_cols=274 Identities=19% Similarity=0.277 Sum_probs=232.6
Q ss_pred ecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC--CC
Q 038537 27 ARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA--EG 102 (358)
Q Consensus 27 ~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~ 102 (358)
+.+.+|..+.+ +++.|+||+.+|.+++|+..+...+. ++.+|...|.++.|+|. +.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~--------------------~l~gH~~~v~~~~fhP~~~~~ 232 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ--------------------TLRGHTSRVGAAVFHPVDSDL 232 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE--------------------EEeccccceeeEEEccCCCcc
Confidence 44567776655 78999999999999999998764432 55899999999999996 56
Q ss_pred EEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCce
Q 038537 103 LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSV 182 (358)
Q Consensus 103 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i 182 (358)
.+++|+.||++++|++.+.. ++..+.+|...|..++|+|+|++|++++.|.+-++||++++.. ....++|...|
T Consensus 233 ~lat~s~Dgtvklw~~~~e~--~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E----lL~QEGHs~~v 306 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQET--PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE----LLLQEGHSKGV 306 (459)
T ss_pred ceeeeccCCceeeeccCCCc--chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh----hHhhccccccc
Confidence 89999999999999999887 8999999999999999999999999999999999999976653 44567899999
Q ss_pred eEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEE--EeeeCCEEEEeeCCCeEEEEEcCCCcee
Q 038537 183 NALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSEDTTIRVWRRAEGGCY 260 (358)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 260 (358)
.+++|.| +|.++++|+.|..-+|||++++ .....+.+|...|.. |+|+|..|+||+.|++++|||++..
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtg----r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r--- 377 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTG----RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR--- 377 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccC----cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---
Confidence 9999999 9999999999999999999994 455568889888855 5678899999999999999999987
Q ss_pred eeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCCccceeeecccCCCc
Q 038537 261 HECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNSKTTTTKMDYEMSP 340 (358)
Q Consensus 261 ~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (358)
..+.++.+|.+-|+.+.|+|.. |.+|+|+|.|++++||.-+ ...|++.+.+|....... -..+..+-
T Consensus 378 -~~ly~ipAH~nlVS~Vk~~p~~-----g~fL~TasyD~t~kiWs~~------~~~~~ksLaGHe~kV~s~-Dis~d~~~ 444 (459)
T KOG0272|consen 378 -SELYTIPAHSNLVSQVKYSPQE-----GYFLVTASYDNTVKIWSTR------TWSPLKSLAGHEGKVISL-DISPDSQA 444 (459)
T ss_pred -ccceecccccchhhheEecccC-----CeEEEEcccCcceeeecCC------CcccchhhcCCccceEEE-EeccCCce
Confidence 5689999999999999999942 8999999999999999877 778899999998763322 22233334
Q ss_pred ccccccch
Q 038537 341 VLSPSWVE 348 (358)
Q Consensus 341 v~s~~W~~ 348 (358)
+.+.+|-+
T Consensus 445 i~t~s~DR 452 (459)
T KOG0272|consen 445 IATSSFDR 452 (459)
T ss_pred EEEeccCc
Confidence 65665543
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-41 Score=255.43 Aligned_cols=272 Identities=21% Similarity=0.322 Sum_probs=233.1
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
.|++++.||.+.|||.-+...++.+.-....|...++ +++++|.|+-|+...||++.+.+......
T Consensus 69 ~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~------------ 136 (343)
T KOG0286|consen 69 RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR------------ 136 (343)
T ss_pred eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce------------
Confidence 4789999999999999988888888888899987655 78899999999999999998653221111
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSV 157 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 157 (358)
..+.+.+|.+-+.|+.|.+ ...|+|++.|.+..+||+++++ .+..|.+|.+.|.+++++| +++.+++|+.|+..
T Consensus 137 --v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~--~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~a 211 (343)
T KOG0286|consen 137 --VSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQ--QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSA 211 (343)
T ss_pred --eeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccce--EEEEecCCcccEEEEecCCCCCCeEEecccccce
Confidence 1135589999999999987 4579999999999999999998 8889999999999999999 99999999999999
Q ss_pred EEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeC
Q 038537 158 KIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE 237 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (358)
++||++.+. ....+.+|.+.|+++.|.| +|.-|++|+.|++.++||++.......+...........+.|+..|
T Consensus 212 klWD~R~~~----c~qtF~ghesDINsv~ffP--~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SG 285 (343)
T KOG0286|consen 212 KLWDVRSGQ----CVQTFEGHESDINSVRFFP--SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSG 285 (343)
T ss_pred eeeeccCcc----eeEeecccccccceEEEcc--CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccc
Confidence 999997664 4567788999999999999 9999999999999999999985443333322222334446677789
Q ss_pred CEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 238 KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
++|++|..|..+.+||.-.+ +.+..+.+|.++|+++..+|+ |..|+|||.|..+|||.
T Consensus 286 RlLfagy~d~~c~vWDtlk~----e~vg~L~GHeNRvScl~~s~D------G~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 286 RLLFAGYDDFTCNVWDTLKG----ERVGVLAGHENRVSCLGVSPD------GMAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEeeecCCceeEeecccc----ceEEEeeccCCeeEEEEECCC------CcEEEecchhHheeecC
Confidence 99999999999999999888 678899999999999999999 99999999999999994
No 7
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-42 Score=267.10 Aligned_cols=267 Identities=24% Similarity=0.428 Sum_probs=235.0
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSK 81 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
+++|..|.+|+|||..+..+...+.+|++.|.|+.++...+++|+.|.+|+|||+++++++.
T Consensus 210 iVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~------------------ 271 (499)
T KOG0281|consen 210 IVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLN------------------ 271 (499)
T ss_pred hhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhh------------------
Confidence 68999999999999999999999999999999999999999999999999999999998774
Q ss_pred CCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCc-ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038537 82 SNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR-CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW 160 (358)
Q Consensus 82 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 160 (358)
++.+|...|..+.|+ +.++++++.|.++.+||+.... ..+.+.+.+|...|+.+.|+ .+++++++.|.+|++|
T Consensus 272 --tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 272 --TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVW 345 (499)
T ss_pred --HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEE
Confidence 557899999999995 4689999999999999997654 23456778999999999996 5699999999999999
Q ss_pred EceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEE
Q 038537 161 RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLI 240 (358)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (358)
++.+. .+...+.+|...|.|+.+ .+.++++|+.|.+|++||+.. ......++||..-+.|+-++.+.+
T Consensus 346 ~~st~----efvRtl~gHkRGIAClQY----r~rlvVSGSSDntIRlwdi~~----G~cLRvLeGHEeLvRciRFd~krI 413 (499)
T KOG0281|consen 346 STSTC----EFVRTLNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIEC----GACLRVLEGHEELVRCIRFDNKRI 413 (499)
T ss_pred eccce----eeehhhhcccccceehhc----cCeEEEecCCCceEEEEeccc----cHHHHHHhchHHhhhheeecCcee
Confidence 99554 467778889999999988 689999999999999999998 456666899999999999999999
Q ss_pred EEeeCCCeEEEEEcCCCceeee-----eeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCC
Q 038537 241 FSGSEDTTIRVWRRAEGGCYHE-----CLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQ 312 (358)
Q Consensus 241 ~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 312 (358)
++|+.||+|++||+..+..+.. ++..+..|.+.|..+.|.. ..+++++.|.+|.|||..+.++.
T Consensus 414 VSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~--------fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 414 VSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE--------FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred eeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc--------eEEEeccCCCeEEEEEcCCCCcc
Confidence 9999999999999998754322 3455667999999999985 48999999999999999876544
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-41 Score=249.57 Aligned_cols=262 Identities=20% Similarity=0.312 Sum_probs=214.6
Q ss_pred eeeeeeeecccceEEEEe---cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEE
Q 038537 20 VERGFIKARHGEVRAILA---HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMA 96 (358)
Q Consensus 20 ~~~~~~~~h~~~v~~i~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 96 (358)
.....+++|++.|+.++. +.+.+++++.|.++.+|++.......... .+.+.||...|..+.
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~---------------~r~~~GHsH~v~dv~ 70 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVP---------------VRRLTGHSHFVSDVV 70 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCce---------------eeeeeccceEecceE
Confidence 455788999999999866 47799999999999999998763222111 124589999999999
Q ss_pred EeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeec
Q 038537 97 FYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLK 176 (358)
Q Consensus 97 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 176 (358)
.+++|++.++++.|+++++||+.+++ ..+.|.+|...|.+++|++|.+.+++|+.|.+|.+|+..... .......
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~--~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c---k~t~~~~ 145 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGE--STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC---KYTIHED 145 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCc--EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE---EEEEecC
Confidence 99999999999999999999999987 788899999999999999999999999999999999975332 2222222
Q ss_pred ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEeeeCCEEEEeeCCCeEEEEEc
Q 038537 177 FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRR 254 (358)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~ 254 (358)
.+...|.++.|+|.....+|++++.|+++++||+++ .++...+.+|...+ +.++|||.+.++|+.||.+.+||+
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~----~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL 221 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN----CQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDL 221 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC----cchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence 337899999999966689999999999999999998 55556677777665 567899999999999999999999
Q ss_pred CCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccC
Q 038537 255 AEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDY 323 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 323 (358)
+.+ +.+..+ +|...|.+++|+|+ ...|+.+ .+-.|+|||++ ...|+.++..
T Consensus 222 ~~~----k~lysl-~a~~~v~sl~fspn------rywL~~a-t~~sIkIwdl~------~~~~v~~l~~ 272 (315)
T KOG0279|consen 222 NEG----KNLYSL-EAFDIVNSLCFSPN------RYWLCAA-TATSIKIWDLE------SKAVVEELKL 272 (315)
T ss_pred cCC----ceeEec-cCCCeEeeEEecCC------ceeEeec-cCCceEEEecc------chhhhhhccc
Confidence 998 445555 68899999999998 4455444 56679999998 4445555543
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-40 Score=247.46 Aligned_cols=266 Identities=21% Similarity=0.336 Sum_probs=214.2
Q ss_pred CEEeeeCCCcEEEEeCC-----CceeeeeeeecccceEEE--EecCCEEEEEeCCceEEEEecccccccccccccccCCC
Q 038537 1 MVFTGSSSTRIRVWRQP-----DCVERGFIKARHGEVRAI--LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~-----~~~~~~~~~~h~~~v~~i--~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
++++++.|.++.+|++. .|..++.+.+|...|..+ ++++++.++++.|+++++||+.+++..+
T Consensus 30 ~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~---------- 99 (315)
T KOG0279|consen 30 ILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTR---------- 99 (315)
T ss_pred eEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEE----------
Confidence 47899999999999874 467789999999999966 5589999999999999999999875543
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccc--cccCeEEEEEcCC--CCEEE
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA--HESNVNAIVVNQD--DGFVF 149 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~ 149 (358)
.+.+|...|.+++|+++.+.+++|+.|.+|++|++.... ..++.. +.+.|.|+.|+|+ ..+|+
T Consensus 100 ----------~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c---k~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 100 ----------RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC---KYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred ----------EEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE---EEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 347999999999999999999999999999999997654 334433 3789999999997 67999
Q ss_pred EEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccce
Q 038537 150 TCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFA 229 (358)
Q Consensus 150 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 229 (358)
+++.|++|++||+++. ++...+.+|.+.++.++++| ||.+.++|+.||.+.+||++..+... ..++...
T Consensus 167 s~s~DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSp--DGslcasGgkdg~~~LwdL~~~k~ly-----sl~a~~~ 235 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSP--DGSLCASGGKDGEAMLWDLNEGKNLY-----SLEAFDI 235 (315)
T ss_pred EccCCceEEEEccCCc----chhhccccccccEEEEEECC--CCCEEecCCCCceEEEEEccCCceeE-----eccCCCe
Confidence 9999999999999544 45566678999999999999 99999999999999999999854422 2344445
Q ss_pred e--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCc-----ccceEEEEeecccceeeeCeEEEEccCCCcEE
Q 038537 230 V--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGH-----RGPVRCLAASLEMEKVVMGFLVYSSSLDQTFK 302 (358)
Q Consensus 230 ~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h-----~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~ 302 (358)
| ++|+|+.-.|+.+. +..|+|||+.++....++.....+. .....+++|+++ |..|++|-.|+.|+
T Consensus 236 v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~d------G~tLf~g~td~~ir 308 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSAD------GQTLFAGYTDNVIR 308 (315)
T ss_pred EeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCC------CcEEEeeecCCcEE
Confidence 5 45556555555554 4559999999985433332222222 334567899999 89999999999999
Q ss_pred EEEee
Q 038537 303 VWRVK 307 (358)
Q Consensus 303 iw~~~ 307 (358)
+|.+.
T Consensus 309 v~qv~ 313 (315)
T KOG0279|consen 309 VWQVA 313 (315)
T ss_pred EEEee
Confidence 99986
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-40 Score=256.64 Aligned_cols=266 Identities=26% Similarity=0.380 Sum_probs=235.2
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccc-cccccccccccCCCceee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVS-DNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~ 77 (358)
++++++.|++|++||..+++....+++|...+.+++++ |.++++++.|=.+++||.++. +++
T Consensus 122 ~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~--------------- 186 (406)
T KOG0295|consen 122 LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCI--------------- 186 (406)
T ss_pred EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHH---------------
Confidence 46888999999999999999999999999999999985 789999999999999999863 222
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcE
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSV 157 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 157 (358)
..+.+|...|.+++|-|.|.++++++.|.+|+.|++.++- ++.++.+|...|..+..+.||.++++++.|.++
T Consensus 187 -----ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~--cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 187 -----KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY--CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL 259 (406)
T ss_pred -----HHhcCcccceeeEEEEecCCeeeecccccceeEEecccce--eEEeccCchHhEEEEEecCCeeEEEecCCCceE
Confidence 2447899999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred EEEEceecCCcceeeeeecccCCceeEEEEeec-------------CCCcEEEEeecCCcEEEEEccCCcCCccccceee
Q 038537 158 KIWRRVYRENSHTLTMTLKFQQSSVNALALSSF-------------FDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ 224 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 224 (358)
++|-+.+++. ...++.|+.+|.+++|.|. ..+.++.+++.|++|++||+.++ .....+.
T Consensus 260 ~vW~~~t~~~----k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg----~cL~tL~ 331 (406)
T KOG0295|consen 260 RVWVVATKQC----KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG----MCLFTLV 331 (406)
T ss_pred EEEEeccchh----hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC----eEEEEEe
Confidence 9999865543 3455678999999999874 12358999999999999999994 4555688
Q ss_pred cccceeEE--EeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEE
Q 038537 225 GHCFAVLC--LVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFK 302 (358)
Q Consensus 225 ~~~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~ 302 (358)
+|...|.. ++|.|+||+++.+|+++++||+++. ++...+..|..-|+++.|+.+ ..+++||+-|.+++
T Consensus 332 ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~----~cmk~~~ah~hfvt~lDfh~~------~p~VvTGsVdqt~K 401 (406)
T KOG0295|consen 332 GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL----QCMKTLEAHEHFVTSLDFHKT------APYVVTGSVDQTVK 401 (406)
T ss_pred cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc----eeeeccCCCcceeEEEecCCC------CceEEeccccceee
Confidence 89888855 5566999999999999999999998 778899999999999999999 56999999999999
Q ss_pred EEEe
Q 038537 303 VWRV 306 (358)
Q Consensus 303 iw~~ 306 (358)
+|..
T Consensus 402 vwEc 405 (406)
T KOG0295|consen 402 VWEC 405 (406)
T ss_pred eeec
Confidence 9974
No 11
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.4e-39 Score=240.35 Aligned_cols=273 Identities=21% Similarity=0.357 Sum_probs=226.8
Q ss_pred CEEeeeCCCcEEEEeCCC---ceeeeee-eecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 1 MVFTGSSSTRIRVWRQPD---CVERGFI-KARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~---~~~~~~~-~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
+||+++.|+.||+|+... ..+...+ .+|+..|..+++ ++++|++||.|.++.||.-..++
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e-------------- 94 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE-------------- 94 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc--------------
Confidence 489999999999999874 4444444 469999999987 78999999999999999866443
Q ss_pred eeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccC-CcccccccccccccCeEEEEEcCCCCEEEEEeC
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLD-KRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS 153 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 153 (358)
|+...++.||...|.|++|+++|++||+++.|+.|-||.+.. .+..+...++.|...|..+.|+|...+|++++.
T Consensus 95 ----fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SY 170 (312)
T KOG0645|consen 95 ----FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSY 170 (312)
T ss_pred ----eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEecc
Confidence 222346789999999999999999999999999999999874 456688889999999999999999999999999
Q ss_pred CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE
Q 038537 154 DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL 233 (358)
Q Consensus 154 dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 233 (358)
|.+|++|+-.. .........+.+|...|.+++|.+ .|..|++++.|++++||.... .. ...|...+..+
T Consensus 171 DnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~--~G~rl~s~sdD~tv~Iw~~~~-----~~---~~~~sr~~Y~v 239 (312)
T KOG0645|consen 171 DNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDN--IGSRLVSCSDDGTVSIWRLYT-----DL---SGMHSRALYDV 239 (312)
T ss_pred CCeEEEEeecC-CCCeeEEEEecCccceEEEEEecC--CCceEEEecCCcceEeeeecc-----Cc---chhcccceEee
Confidence 99999998654 466777888999999999999998 899999999999999998663 11 23355667777
Q ss_pred eeeCCEEEEeeCCCeEEEEEcCCCc--eeeeeee-eecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 234 VAIEKLIFSGSEDTTIRVWRRAEGG--CYHECLA-VLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 234 ~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~-~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
+++...|++++.|+.|++|.-.... +..+.+. .-..|...|++++|+|.. ..+|++|+.||.|++|.+.
T Consensus 240 ~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~-----~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 240 PWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV-----SNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC-----CCceeecCCCceEEEEEec
Confidence 7778899999999999999766431 1122222 345688999999999942 4799999999999999875
No 12
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.1e-41 Score=259.94 Aligned_cols=252 Identities=28% Similarity=0.521 Sum_probs=222.2
Q ss_pred ccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe
Q 038537 29 HGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS 108 (358)
Q Consensus 29 ~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 108 (358)
...|.|+.++++.+++|..|++|+|||.++..+.. .+.||++.|.|+.| +.+.|++|+
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~--------------------~L~GHtGSVLCLqy--d~rviisGS 254 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLK--------------------ILTGHTGSVLCLQY--DERVIVSGS 254 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccHHHHH--------------------hhhcCCCcEEeeec--cceEEEecC
Confidence 45789999999999999999999999998766543 55799999999999 667999999
Q ss_pred cCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEe
Q 038537 109 FDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALS 188 (358)
Q Consensus 109 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 188 (358)
.|.+|++||+++++ ++.++..|...|..+.|+ ..++++++.|.++.+||+.... ...+...+.+|...|+.+.|+
T Consensus 255 SDsTvrvWDv~tge--~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps-~it~rrVLvGHrAaVNvVdfd 329 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGE--PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPT-DITLRRVLVGHRAAVNVVDFD 329 (499)
T ss_pred CCceEEEEeccCCc--hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCch-HHHHHHHHhhhhhheeeeccc
Confidence 99999999999999 899999999999999997 6789999999999999997654 444556778899999999994
Q ss_pred ecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeec
Q 038537 189 SFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLD 268 (358)
Q Consensus 189 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 268 (358)
.+++++++.|.+|++|++.+ ......+.+|...+.|+...++++++|+.|.+|++||+..+ .++..++
T Consensus 330 ----~kyIVsASgDRTikvW~~st----~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G----~cLRvLe 397 (499)
T KOG0281|consen 330 ----DKYIVSASGDRTIKVWSTST----CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG----ACLRVLE 397 (499)
T ss_pred ----cceEEEecCCceEEEEeccc----eeeehhhhcccccceehhccCeEEEecCCCceEEEEecccc----HHHHHHh
Confidence 56999999999999999998 56677789999999999999999999999999999999999 7799999
Q ss_pred CcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCC---cceeecccccCCCCc
Q 038537 269 GHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQ---EKTMCLDYSDYHSNS 327 (358)
Q Consensus 269 ~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~---~~~~~~~~~~~~~~~ 327 (358)
||..-|.++.|.. +.+++|+.||+|++||+....++ ....|+..+-.|...
T Consensus 398 GHEeLvRciRFd~--------krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgR 451 (499)
T KOG0281|consen 398 GHEELVRCIRFDN--------KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGR 451 (499)
T ss_pred chHHhhhheeecC--------ceeeeccccceEEEEecccccCCcccccchHHHhhhhccce
Confidence 9999999999985 48999999999999999876544 445577777666543
No 13
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=7.8e-39 Score=247.40 Aligned_cols=269 Identities=22% Similarity=0.388 Sum_probs=231.6
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecC--CEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHD--NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+++||+.|++|+|||+.++++..++.+|-..|..+.+.. .|+++++.|+.|+.||+...+.++
T Consensus 165 wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR--------------- 229 (460)
T KOG0285|consen 165 WFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR--------------- 229 (460)
T ss_pred eEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHH---------------
Confidence 479999999999999999999999999999999998864 599999999999999999888775
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
.+.+|-..|.|++.+|.-+.|++|+.|.++++||+++.. .+..+.+|..+|..+.+.|-...+++|+.|++|+
T Consensus 230 -----~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~--~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 230 -----HYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA--SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred -----HhccccceeEEEeccccceeEEecCCcceEEEeeecccc--eEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 346999999999999999999999999999999999988 8999999999999999999888999999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeee-C
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI-E 237 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 237 (358)
+||++.++. ...+..|...+.+++.+| ....+++++.| .|+-|++..+ .....+.+|...+.+++.+ .
T Consensus 303 lWDl~agkt----~~tlt~hkksvral~lhP--~e~~fASas~d-nik~w~~p~g----~f~~nlsgh~~iintl~~nsD 371 (460)
T KOG0285|consen 303 LWDLRAGKT----MITLTHHKKSVRALCLHP--KENLFASASPD-NIKQWKLPEG----EFLQNLSGHNAIINTLSVNSD 371 (460)
T ss_pred EeeeccCce----eEeeecccceeeEEecCC--chhhhhccCCc-cceeccCCcc----chhhccccccceeeeeeeccC
Confidence 999987664 344556899999999998 88889999887 5999998873 3344478899999999875 5
Q ss_pred CEEEEeeCCCeEEEEEcCCCceeeeeeeeec-C---cccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 238 KLIFSGSEDTTIRVWRRAEGGCYHECLAVLD-G---HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~---h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.++++|+++|.+.+||.+++...++...... + ....|.+.+|... |..|+||..|.+|++|.-..
T Consensus 372 ~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt------g~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 372 GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT------GSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred ceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc------CceEEeccCCcceEEEeccc
Confidence 7999999999999999999854222111111 1 2457899999998 88999999999999998654
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.6e-40 Score=257.62 Aligned_cols=266 Identities=22% Similarity=0.309 Sum_probs=227.6
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
|++|+..|.+.+|+..+......+..|..+|.++.+ ++.++++|+.+|.|++|+..-.....
T Consensus 111 Lltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~---------------- 174 (464)
T KOG0284|consen 111 LLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI---------------- 174 (464)
T ss_pred eEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH----------------
Confidence 789999999999999877777788899999999977 68899999999999999976432211
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
....|...|++++|+|+...+++++.||+|+|||....+ ....+.+|.-.|.+++|+|...++++++.|..|++
T Consensus 175 ----~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k--ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl 248 (464)
T KOG0284|consen 175 ----IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK--EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL 248 (464)
T ss_pred ----hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc--hhheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence 113455899999999999999999999999999998877 66677899999999999999999999999999999
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee---e
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA---I 236 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 236 (358)
||.+++... ..+..|...|..+.|.+ ++++|++++.|..+++||++++ +......+|...+.++.+ .
T Consensus 249 WDprSg~cl----~tlh~HKntVl~~~f~~--n~N~Llt~skD~~~kv~DiR~m----kEl~~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 249 WDPRSGSCL----ATLHGHKNTVLAVKFNP--NGNWLLTGSKDQSCKVFDIRTM----KELFTYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred ecCCCcchh----hhhhhccceEEEEEEcC--CCCeeEEccCCceEEEEehhHh----HHHHHhhcchhhheeecccccc
Confidence 999877654 45567999999999999 8899999999999999999973 344447788888888744 4
Q ss_pred CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
..+|.+|+.||.|..|.+...+ .....-.+|...|++++|+|- |.+|++|+.|.++++|.-..
T Consensus 319 ~~lftsgg~Dgsvvh~~v~~~~---p~~~i~~AHd~~iwsl~~hPl------Ghil~tgsnd~t~rfw~r~r 381 (464)
T KOG0284|consen 319 ESLFTSGGSDGSVVHWVVGLEE---PLGEIPPAHDGEIWSLAYHPL------GHILATGSNDRTVRFWTRNR 381 (464)
T ss_pred ccceeeccCCCceEEEeccccc---cccCCCcccccceeeeecccc------ceeEeecCCCcceeeeccCC
Confidence 6899999999999999998542 223344579999999999999 89999999999999997543
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.9e-39 Score=272.06 Aligned_cols=259 Identities=22% Similarity=0.352 Sum_probs=214.0
Q ss_pred ccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCC--------ceee---eecCCCccccCCCceEEE
Q 038537 29 HGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRR--------SSFL---SFSKSNTQQQHRDCVSCM 95 (358)
Q Consensus 29 ~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~h~~~v~~~ 95 (358)
...++|..+ ++..+|.|-.|..|++|.+...+............. ...+ .-....++.+|.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 345566655 567889999999999999985432211111111100 0000 011113578999999999
Q ss_pred EEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeee
Q 038537 96 AFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTL 175 (358)
Q Consensus 96 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 175 (358)
.|+|+.++|++++.|+++|+|.+.+.. ++..+.+|..||.++.|+|.|-+|++++.|++.++|.... ....+.+
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s--~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~----~~PlRif 531 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWS--CLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH----NKPLRIF 531 (707)
T ss_pred eecccccceeeccCCcceeeeecccce--eEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc----CCchhhh
Confidence 999999999999999999999999888 7888889999999999999999999999999999999743 3445677
Q ss_pred cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEE--EeeeCCEEEEeeCCCeEEEEE
Q 038537 176 KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSEDTTIRVWR 253 (358)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iwd 253 (358)
.+|.+.|.|+.|+| +..++++|+.|.++++||..++. ..+.+.||..+|.+ ++|+|++|++|+.||.|.+||
T Consensus 532 aghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~----~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGN----SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred cccccccceEEECC--cccccccCCCCceEEEEEcCCCc----EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence 88999999999999 99999999999999999999843 45567899988855 578899999999999999999
Q ss_pred cCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 254 RAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
+.++ +++..+.+|++.|.++.|+.+ |..||+||.|.+|++||+...
T Consensus 606 l~~~----~~v~~l~~Ht~ti~SlsFS~d------g~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 606 LANG----SLVKQLKGHTGTIYSLSFSRD------GNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred cCCC----cchhhhhcccCceeEEEEecC------CCEEEecCCCCeEEEEEchhh
Confidence 9998 678899999999999999999 889999999999999999854
No 16
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.4e-39 Score=259.24 Aligned_cols=267 Identities=16% Similarity=0.286 Sum_probs=228.0
Q ss_pred CEEeeeCCCcEEEEeCCC-ceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 1 MVFTGSSSTRIRVWRQPD-CVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~-~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
||++++.|+.|+||++-+ +++++++.+|..+|.++.| ++..+++++.|+.|++||++++++...+..
T Consensus 229 LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~---------- 298 (503)
T KOG0282|consen 229 LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL---------- 298 (503)
T ss_pred EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec----------
Confidence 689999999999999865 8999999999999999988 478999999999999999999988765432
Q ss_pred eecCCCccccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
...++|+.|+|++ +.+++|+.|+.|+.||+++++ .++.+..|-+.|..+.|-+++..+++.+.|+.
T Consensus 299 -----------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--vvqeYd~hLg~i~~i~F~~~g~rFissSDdks 365 (503)
T KOG0282|consen 299 -----------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--VVQEYDRHLGAILDITFVDEGRRFISSSDDKS 365 (503)
T ss_pred -----------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchH--HHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence 3457999999988 789999999999999999999 88899999999999999999999999999999
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccce----eEE
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFA----VLC 232 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----~~~ 232 (358)
+++|+.+..-.. ......+.....++..+| +++++++-+.|..|.+|.+...- .......+.+|... -+.
T Consensus 366 ~riWe~~~~v~i---k~i~~~~~hsmP~~~~~P--~~~~~~aQs~dN~i~ifs~~~~~-r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 366 VRIWENRIPVPI---KNIADPEMHTMPCLTLHP--NGKWFAAQSMDNYIAIFSTVPPF-RLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred EEEEEcCCCccc---hhhcchhhccCcceecCC--CCCeehhhccCceEEEEeccccc-ccCHhhhhcceeccCceeeEE
Confidence 999998654322 222233455677888888 99999999999999999966422 22333345566543 366
Q ss_pred EeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 233 LVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 233 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
++|+|.+|++|+.||.+.+||.++. +.+..+++|.+++..+.|+|..+ ..+|||+.||.|++|+
T Consensus 440 fSpDG~~l~SGdsdG~v~~wdwkt~----kl~~~lkah~~~ci~v~wHP~e~-----Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 440 FSPDGRTLCSGDSDGKVNFWDWKTT----KLVSKLKAHDQPCIGVDWHPVEP-----SKVATCGWDGLIKIWD 503 (503)
T ss_pred EcCCCCeEEeecCCccEEEeechhh----hhhhccccCCcceEEEEecCCCc-----ceeEecccCceeEecC
Confidence 7899999999999999999999998 67889999999999999999864 6899999999999996
No 17
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.7e-38 Score=263.02 Aligned_cols=271 Identities=22% Similarity=0.318 Sum_probs=233.4
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEE-e-cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAIL-A-HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~-~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
.||+++..+.+|+++..+..+. .+.+|+..|.++. + .|.+|+||+.|.++++|.++.+.....
T Consensus 338 ~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~-------------- 402 (775)
T KOG0319|consen 338 HLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSL-------------- 402 (775)
T ss_pred eEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhh--------------
Confidence 4789999999999999888775 8899999999997 4 566999999999999999954432211
Q ss_pred ecCCCccccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCc-------ccccccccccccCeEEEEEcCCCCEEEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKR-------CTCVDSFVAHESNVNAIVVNQDDGFVFT 150 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 150 (358)
......+|...|.+++++..+ .+|+++|.|+++++|++...+ ..+..+...|...|+|++++|+..++++
T Consensus 403 --~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT 480 (775)
T KOG0319|consen 403 --CVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIAT 480 (775)
T ss_pred --hhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEe
Confidence 112336999999999997654 589999999999999997621 1122234579999999999999999999
Q ss_pred EeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee
Q 038537 151 CSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV 230 (358)
Q Consensus 151 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 230 (358)
|+.|.+.++|++. ...+...+.+|...+.++.|+| ....++++|.|++|+||.+.+ +.....+.||...|
T Consensus 481 ~SqDktaKiW~le----~~~l~~vLsGH~RGvw~V~Fs~--~dq~laT~SgD~TvKIW~is~----fSClkT~eGH~~aV 550 (775)
T KOG0319|consen 481 GSQDKTAKIWDLE----QLRLLGVLSGHTRGVWCVSFSK--NDQLLATCSGDKTVKIWSIST----FSCLKTFEGHTSAV 550 (775)
T ss_pred cccccceeeeccc----CceEEEEeeCCccceEEEEecc--ccceeEeccCCceEEEEEecc----ceeeeeecCcccee
Confidence 9999999999995 5567788899999999999999 889999999999999999998 67777899999999
Q ss_pred EEEee--eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 231 LCLVA--IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 231 ~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
...++ ++..|++++.||.|++|+++++ +++.++.+|...|.+++.+|. ..+++||+.||.|.+|.=.+
T Consensus 551 lra~F~~~~~qliS~~adGliKlWnikt~----eC~~tlD~H~DrvWaL~~~~~------~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 551 LRASFIRNGKQLISAGADGLIKLWNIKTN----ECEMTLDAHNDRVWALSVSPL------LDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EeeeeeeCCcEEEeccCCCcEEEEeccch----hhhhhhhhccceeEEEeecCc------cceeEecCCCeEEEEeecCc
Confidence 77665 7899999999999999999999 789999999999999999999 78999999999999997544
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.1e-37 Score=248.97 Aligned_cols=321 Identities=18% Similarity=0.265 Sum_probs=236.6
Q ss_pred CEEeeeCCCcEEEEeCCCce--eeeeeeecccceEEEEec--CCEEEEEeC----CceEEEEeccccc------------
Q 038537 1 MVFTGSSSTRIRVWRQPDCV--ERGFIKARHGEVRAILAH--DNMLFTTNK----DCKIRIWNFTVSD------------ 60 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~--~~~~~~~h~~~v~~i~~~--~~~l~s~~~----dg~i~iw~~~~~~------------ 60 (358)
|+|+|...|+|||||....+ +...++.-.++|..|+|+ +.++++.++ =|.+.+||..+.-
T Consensus 73 yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins 152 (603)
T KOG0318|consen 73 YIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINS 152 (603)
T ss_pred EEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEee
Confidence 58999999999999986533 334566677889988884 556665543 2346667754311
Q ss_pred ----ccccccccccCCCcee--e---eecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccc-
Q 038537 61 ----NFRTKKVTTLPRRSSF--L---SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFV- 130 (358)
Q Consensus 61 ----~~~~~~~~~~~~~~~~--~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~- 130 (358)
+-++++.....+.... + .|.-..++..|...|.|+.|+|||.++++++.||++.+||-.+++ .+..+.
T Consensus 153 ~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge--~vg~l~~ 230 (603)
T KOG0318|consen 153 VDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE--KVGELED 230 (603)
T ss_pred eeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc--EEEEecC
Confidence 0111111111111111 1 233345778899999999999999999999999999999999988 666665
Q ss_pred --ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcce--------------------------------------
Q 038537 131 --AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHT-------------------------------------- 170 (358)
Q Consensus 131 --~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-------------------------------------- 170 (358)
+|.+.|.+++|+||+..+++++.|.++++||+.+.....+
T Consensus 231 ~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 231 SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence 8999999999999999999999999999999876533221
Q ss_pred -eeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccc------------------------------
Q 038537 171 -LTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH------------------------------ 219 (358)
Q Consensus 171 -~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------------------------ 219 (358)
......+|...|+++..++ ++.+|++|+.||.|.-|+..++......
T Consensus 311 ~~~~~i~GHnK~ITaLtv~~--d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~ 388 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTVSP--DGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRV 388 (603)
T ss_pred ChhheecccccceeEEEEcC--CCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEE
Confidence 1223468899999999998 8999999999999999998764211000
Q ss_pred --------------------c-------------------ceee----------cccceeEEEeeeCCEEEEeeCCCeEE
Q 038537 220 --------------------G-------------------GFLQ----------GHCFAVLCLVAIEKLIFSGSEDTTIR 250 (358)
Q Consensus 220 --------------------~-------------------~~~~----------~~~~~~~~~~~~~~~l~~~~~dg~i~ 250 (358)
. ..+. +......+++|++..++.|+.||.|+
T Consensus 389 ~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvh 468 (603)
T KOG0318|consen 389 ISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVH 468 (603)
T ss_pred EecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEE
Confidence 0 0000 11122356677889999999999999
Q ss_pred EEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCCccce
Q 038537 251 VWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNSKTT 330 (358)
Q Consensus 251 iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (358)
+|.+..... .....+..|.++|++++++|+ +.+||+|...+.+.+||+.+... .
T Consensus 469 vysl~g~~l--~ee~~~~~h~a~iT~vaySpd------~~yla~~Da~rkvv~yd~~s~~~------------------~ 522 (603)
T KOG0318|consen 469 VYSLSGDEL--KEEAKLLEHRAAITDVAYSPD------GAYLAAGDASRKVVLYDVASREV------------------K 522 (603)
T ss_pred EEEecCCcc--cceeeeecccCCceEEEECCC------CcEEEEeccCCcEEEEEcccCce------------------e
Confidence 999998754 334456689999999999999 89999999999999999985321 2
Q ss_pred eeecccCCCcccccccchhhh
Q 038537 331 TTKMDYEMSPVLSPSWVEKKM 351 (358)
Q Consensus 331 ~~~~~~~~~~v~s~~W~~~~~ 351 (358)
.....||...|..+.|+++..
T Consensus 523 ~~~w~FHtakI~~~aWsP~n~ 543 (603)
T KOG0318|consen 523 TNRWAFHTAKINCVAWSPNNK 543 (603)
T ss_pred cceeeeeeeeEEEEEeCCCce
Confidence 445677888899999988764
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.9e-38 Score=249.28 Aligned_cols=264 Identities=22% Similarity=0.336 Sum_probs=219.7
Q ss_pred CEEeeeCCCcEEEEeCCC--ce--eeeeee------ec----ccceEEEEec--CCEEEEEeCCceEEEEeccccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPD--CV--ERGFIK------AR----HGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRT 64 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~--~~--~~~~~~------~h----~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~ 64 (358)
++++|+.|-..|+|++.. .. ....++ ++ ...|+++.|+ |+.||+|+.||.+++|+.......
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~-- 270 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLIS-- 270 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhh--
Confidence 478899999999999864 11 111111 11 3579999996 899999999999999998865432
Q ss_pred ccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC
Q 038537 65 KKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD 144 (358)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (358)
++..|.++|.++.|+..|.+|++++.|+++.+||..+++ ..+.+..|+.+-..+.|- +
T Consensus 271 -------------------tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~--~~q~f~~~s~~~lDVdW~-~ 328 (524)
T KOG0273|consen 271 -------------------TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT--VKQQFEFHSAPALDVDWQ-S 328 (524)
T ss_pred -------------------hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce--EEEeeeeccCCccceEEe-c
Confidence 557899999999999999999999999999999999988 566677788887888887 4
Q ss_pred CCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceee
Q 038537 145 DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ 224 (358)
Q Consensus 145 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 224 (358)
...+++++.|+.|+|+.+... .+..++.+|..+|.++.|+| .+.+|++++.|++++||.+.. ......+.
T Consensus 329 ~~~F~ts~td~~i~V~kv~~~----~P~~t~~GH~g~V~alk~n~--tg~LLaS~SdD~TlkiWs~~~----~~~~~~l~ 398 (524)
T KOG0273|consen 329 NDEFATSSTDGCIHVCKVGED----RPVKTFIGHHGEVNALKWNP--TGSLLASCSDDGTLKIWSMGQ----SNSVHDLQ 398 (524)
T ss_pred CceEeecCCCceEEEEEecCC----CcceeeecccCceEEEEECC--CCceEEEecCCCeeEeeecCC----Ccchhhhh
Confidence 567899999999999998543 34556667999999999998 999999999999999999876 23444467
Q ss_pred cccceeEEEee-----------eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEE
Q 038537 225 GHCFAVLCLVA-----------IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVY 293 (358)
Q Consensus 225 ~~~~~~~~~~~-----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~ 293 (358)
.|...+..+.+ .+..+++++.|++|++||+..+ .++.++..|..+|.+++|+|+ |+++|
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g----v~i~~f~kH~~pVysvafS~~------g~ylA 468 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG----VPIHTLMKHQEPVYSVAFSPN------GRYLA 468 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC----ceeEeeccCCCceEEEEecCC------CcEEE
Confidence 78766655543 2468999999999999999999 778899999999999999999 89999
Q ss_pred EccCCCcEEEEEeee
Q 038537 294 SSSLDQTFKVWRVKV 308 (358)
Q Consensus 294 s~~~dg~v~iw~~~~ 308 (358)
+|+.||.|.+|+.+.
T Consensus 469 sGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKT 483 (524)
T ss_pred ecCCCCeeEeccccc
Confidence 999999999999984
No 20
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-36 Score=228.80 Aligned_cols=283 Identities=18% Similarity=0.247 Sum_probs=232.1
Q ss_pred eeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEe
Q 038537 21 ERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFY 98 (358)
Q Consensus 21 ~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 98 (358)
..+++++|.+.|.++.| +.+++++++.||.+.|||.-+....... .-....|..++|+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~hai--------------------pl~s~WVMtCA~s 106 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAI--------------------PLPSSWVMTCAYS 106 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEE--------------------ecCceeEEEEEEC
Confidence 44789999999999977 6789999999999999998776544322 2345679999999
Q ss_pred CCCCEEEEEecCCeEEEEEccCC----cccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeee
Q 038537 99 HAEGLLYTGSFDKTVKAWRVLDK----RCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMT 174 (358)
Q Consensus 99 ~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 174 (358)
|.|+++++|+.|+...||++.+. .....+.+.+|.+.+.|+.|.+ ...|++++.|.++.+||+++++ ....
T Consensus 107 PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~----~~~~ 181 (343)
T KOG0286|consen 107 PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQ----QTQV 181 (343)
T ss_pred CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccce----EEEE
Confidence 99999999999999999999854 2234566889999999999987 5678999999999999996554 5667
Q ss_pred ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEeeeCCEEEEeeCCCeEEEE
Q 038537 175 LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVW 252 (358)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iw 252 (358)
+.+|.+.|.++.+.|. +++.+++|+-|+..++||++.+ ...+.+.+|...| +++.|+|.-+++|++|++.|+|
T Consensus 182 f~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRly 256 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLY 256 (343)
T ss_pred ecCCcccEEEEecCCC-CCCeEEecccccceeeeeccCc----ceeEeecccccccceEEEccCCCeeeecCCCceeEEE
Confidence 7899999999999985 8999999999999999999983 5556688888777 5566899999999999999999
Q ss_pred EcCCCceeeeeeeeec--CcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCCccce
Q 038537 253 RRAEGGCYHECLAVLD--GHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNSKTT 330 (358)
Q Consensus 253 d~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (358)
|++..+ .+..+. .-..+|++++|+.. |++|.+|..|.++.+||.- +..-...+.+|.+...
T Consensus 257 DlRaD~----~~a~ys~~~~~~gitSv~FS~S------GRlLfagy~d~~c~vWDtl------k~e~vg~L~GHeNRvS- 319 (343)
T KOG0286|consen 257 DLRADQ----ELAVYSHDSIICGITSVAFSKS------GRLLFAGYDDFTCNVWDTL------KGERVGVLAGHENRVS- 319 (343)
T ss_pred eecCCc----EEeeeccCcccCCceeEEEccc------ccEEEeeecCCceeEeecc------ccceEEEeeccCCeeE-
Confidence 999983 344443 23458999999999 9999999999999999987 4445566778877643
Q ss_pred eeecccCCCcccccccchhh
Q 038537 331 TTKMDYEMSPVLSPSWVEKK 350 (358)
Q Consensus 331 ~~~~~~~~~~v~s~~W~~~~ 350 (358)
......+...+-+.+|-...
T Consensus 320 cl~~s~DG~av~TgSWDs~l 339 (343)
T KOG0286|consen 320 CLGVSPDGMAVATGSWDSTL 339 (343)
T ss_pred EEEECCCCcEEEecchhHhe
Confidence 33445566678888987643
No 21
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=4.5e-37 Score=239.22 Aligned_cols=271 Identities=23% Similarity=0.352 Sum_probs=226.8
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe---c--CCEEEEEeCCceEEEEecccccccccccccccCCCce
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA---H--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~---~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
.|++|++||.+++||. .|+....+.+|.++|.++.+ + ...|++++.|.++++|..+.++.......
T Consensus 117 ~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~-------- 187 (423)
T KOG0313|consen 117 WILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK-------- 187 (423)
T ss_pred eEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh--------
Confidence 3789999999999996 57788999999999997766 2 23699999999999999987765432221
Q ss_pred eeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCC-----------------------ccccccccccc
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDK-----------------------RCTCVDSFVAH 132 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~ 132 (358)
...||...|-+++..+++..+++|+.|..|.||+.... ...++..+.+|
T Consensus 188 --------~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 188 --------VCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred --------HhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 22599999999999999999999999999999993211 12355567899
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 133 ESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 133 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
..+|.++.|++ ...+++++.|.+|+.||+.++.....+. .+..+.++.+.| ...+|++|+.|..|++||.++
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-----~~ksl~~i~~~~--~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-----TNKSLNCISYSP--LSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-----cCcceeEeeccc--ccceeeecCCCCceeecCCCC
Confidence 99999999997 7789999999999999998887655544 367889999998 899999999999999999998
Q ss_pred CcCCccccceeecccceeEEEee---eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeC
Q 038537 213 MSGGFNHGGFLQGHCFAVLCLVA---IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMG 289 (358)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~ 289 (358)
+.. ......+.+|...|.++.+ +...|++|+.|+++++||+++.+ .++..+.+|...|.++.|.. +
T Consensus 332 ~~g-s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k---~plydI~~h~DKvl~vdW~~-------~ 400 (423)
T KOG0313|consen 332 GDG-SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK---APLYDIAGHNDKVLSVDWNE-------G 400 (423)
T ss_pred CCC-ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC---CcceeeccCCceEEEEeccC-------C
Confidence 643 3344567899988877665 35789999999999999999984 48999999999999999997 4
Q ss_pred eEEEEccCCCcEEEEEee
Q 038537 290 FLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 290 ~~l~s~~~dg~v~iw~~~ 307 (358)
.++++||.|.+|+|+.-.
T Consensus 401 ~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 401 GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEeccCcceEEEeccc
Confidence 799999999999998755
No 22
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.3e-37 Score=238.85 Aligned_cols=270 Identities=18% Similarity=0.220 Sum_probs=223.2
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+++||+.|-.-.+|++.++.....+.+|...|+++.| ++.+||||+.+|.|+||...++......
T Consensus 78 l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~------------- 144 (399)
T KOG0296|consen 78 LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL------------- 144 (399)
T ss_pred eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe-------------
Confidence 5789999999999999999999999999999999977 6889999999999999999988765432
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
..--..|.=+.|+|.+..|++|+.||.+.+|.+.++. ..+.+.+|..++++=.|.|+|+.++++..||+|+
T Consensus 145 -------~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~--~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 145 -------DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA--LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII 215 (399)
T ss_pred -------ecccCceEEEEecccccEEEeecCCCcEEEEECCCcc--eeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence 2234557789999999999999999999999998865 6778889999999999999999999999999999
Q ss_pred EEEceecCCcceeeee---------------------------------------ec--------ccCCceeEEEEeec-
Q 038537 159 IWRRVYRENSHTLTMT---------------------------------------LK--------FQQSSVNALALSSF- 190 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~---------------------------------------~~--------~~~~~i~~~~~~~~- 190 (358)
+||+.++.....+... .. .+...+.++.+.|.
T Consensus 216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s 295 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS 295 (399)
T ss_pred EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc
Confidence 9999877543322200 00 11122233333321
Q ss_pred CCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeC-CEEEEeeCCCeEEEEEcCCCceeeeeeeeecC
Q 038537 191 FDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE-KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDG 269 (358)
Q Consensus 191 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 269 (358)
..-.+.|+|+.||+|.|||+.... .+..-.|...|+.+.+.+ .+|++++.||.|+.||.+++ +++.++.+
T Consensus 296 s~lpL~A~G~vdG~i~iyD~a~~~-----~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG----~l~~~y~G 366 (399)
T KOG0296|consen 296 SKLPLAACGSVDGTIAIYDLAAST-----LRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTG----QLKFTYTG 366 (399)
T ss_pred cccchhhcccccceEEEEecccch-----hheeccCCCceEEEEEcCcchheeeccCceEEeeecccc----ceEEEEec
Confidence 134578899999999999998732 233446777888888876 89999999999999999999 77889999
Q ss_pred cccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 270 HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 270 h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
|...|.+++++|+ .++++|+|.|++.+||++.
T Consensus 367 H~~~Il~f~ls~~------~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSPQ------KRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcCC------CcEEEEecCCCeEEEEecC
Confidence 9999999999999 8899999999999999875
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.3e-37 Score=266.59 Aligned_cols=267 Identities=26% Similarity=0.465 Sum_probs=225.5
Q ss_pred CEEeeeCCCcEEEEeCCCce--eeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccc-cccccccccccCCCce
Q 038537 1 MVFTGSSSTRIRVWRQPDCV--ERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVS-DNFRTKKVTTLPRRSS 75 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~--~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~-~~~~~~~~~~~~~~~~ 75 (358)
++++++.|+.+++|+..+.+ ....+.+|...|.++.| ++.++++++.|++|+|||+... ..++
T Consensus 173 ~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~------------ 240 (456)
T KOG0266|consen 173 ALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK------------ 240 (456)
T ss_pred eEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE------------
Confidence 37889999999999998777 77778899999998877 6789999999999999999433 3332
Q ss_pred eeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG 155 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 155 (358)
++.+|...|++++|+|+++++++|+.|++|+|||+++++ +...+.+|.+.|++++|++++++|++++.|+
T Consensus 241 --------~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~--~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 241 --------TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE--CVRKLKGHSDGISGLAFSPDGNLLVSASYDG 310 (456)
T ss_pred --------EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe--EEEeeeccCCceEEEEECCCCCEEEEcCCCc
Confidence 557999999999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred cEEEEEceecCCcceeeeeecccCC--ceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE
Q 038537 156 SVKIWRRVYRENSHTLTMTLKFQQS--SVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL 233 (358)
Q Consensus 156 ~i~~wd~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 233 (358)
.|++||+.++... ....+..+.. .++.+.|+| ++.++++++.|+.+++||+..... .....+|...+.|+
T Consensus 311 ~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp--~~~~ll~~~~d~~~~~w~l~~~~~----~~~~~~~~~~~~~~ 382 (456)
T KOG0266|consen 311 TIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSP--NGKYLLSASLDRTLKLWDLRSGKS----VGTYTGHSNLVRCI 382 (456)
T ss_pred cEEEEECCCCcee--eeecccCCCCCCceeEEEECC--CCcEEEEecCCCeEEEEEccCCcc----eeeecccCCcceeE
Confidence 9999999776532 1222222333 699999998 999999999999999999998433 33344454433232
Q ss_pred -----eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCc-ccceEEEEeecccceeeeCeEEEEcc--CCCcEEEEE
Q 038537 234 -----VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGH-RGPVRCLAASLEMEKVVMGFLVYSSS--LDQTFKVWR 305 (358)
Q Consensus 234 -----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~~~~~~~~~l~s~~--~dg~v~iw~ 305 (358)
.+.+.++++|+.|+.|++||+.++ ..+..+.+| ...+..+.++|. ..++++++ .|+.+++|.
T Consensus 383 ~~~~~~~~~~~i~sg~~d~~v~~~~~~s~----~~~~~l~~h~~~~~~~~~~~~~------~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 383 FSPTLSTGGKLIYSGSEDGSVYVWDSSSG----GILQRLEGHSKAAVSDLSSHPT------ENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ecccccCCCCeEEEEeCCceEEEEeCCcc----chhhhhcCCCCCceeccccCCC------cCeeeecCcCCCceEEEec
Confidence 457899999999999999999987 668888899 899999999999 77899988 799999997
Q ss_pred ee
Q 038537 306 VK 307 (358)
Q Consensus 306 ~~ 307 (358)
.+
T Consensus 453 ~~ 454 (456)
T KOG0266|consen 453 YD 454 (456)
T ss_pred CC
Confidence 64
No 24
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.5e-37 Score=231.39 Aligned_cols=265 Identities=22% Similarity=0.351 Sum_probs=225.0
Q ss_pred CEEeeeCCCcEEEEeC-CCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 1 MVFTGSSSTRIRVWRQ-PDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~-~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
+||||+.|..|.+|+. ...+-...+++|.+.|..+.+ +++.+++++.|.+++.||.++++.++.
T Consensus 61 ~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk------------- 127 (338)
T KOG0265|consen 61 CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK------------- 127 (338)
T ss_pred eEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh-------------
Confidence 4899999999999995 556667888999999999987 789999999999999999999987753
Q ss_pred eecCCCccccCCCceEEEEEeCCCC-EEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEG-LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
+++|.+.|+.+.-+.-|. ++.+|+.|+++++||+++.. .++++. ..-.++++.|...+..+++|+-|+.
T Consensus 128 -------~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~--~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 128 -------HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE--AIKTFE-NKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred -------hccccceeeecCccccCCeEEEecCCCceEEEEeecccc--hhhccc-cceeEEEEEecccccceeeccccCc
Confidence 368999999998554444 66788999999999999887 666653 3567999999999999999999999
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccce------e
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFA------V 230 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~------~ 230 (358)
|++||++.+. ....+.+|...|+.+..++ ++.++.+-+.|.++++||++--.........+.+|.-. -
T Consensus 198 ikvWd~r~~d----~~~~lsGh~DtIt~lsls~--~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~ 271 (338)
T KOG0265|consen 198 IKVWDLRKND----GLYTLSGHADTITGLSLSR--YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK 271 (338)
T ss_pred eeeeccccCc----ceEEeecccCceeeEEecc--CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce
Confidence 9999996544 4567789999999999998 99999999999999999998744444444445544322 2
Q ss_pred EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEE
Q 038537 231 LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304 (358)
Q Consensus 231 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw 304 (358)
.+++|++..+.+|+.|..+++||..+. ..+..+.||.+.|+++.|+|. ..+|.+++.|.+|.+=
T Consensus 272 cswsp~~~~i~ags~dr~vyvwd~~~r----~~lyklpGh~gsvn~~~Fhp~------e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 272 CSWSPNGTKITAGSADRFVYVWDTTSR----RILYKLPGHYGSVNEVDFHPT------EPIILSCSSDKTIYLG 335 (338)
T ss_pred eeccCCCCccccccccceEEEeecccc----cEEEEcCCcceeEEEeeecCC------CcEEEEeccCceeEee
Confidence 566788999999999999999999987 678999999999999999999 6799999999999863
No 25
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-37 Score=237.23 Aligned_cols=269 Identities=24% Similarity=0.404 Sum_probs=226.1
Q ss_pred eeeeeeecccceEEEEecCC--EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEe
Q 038537 21 ERGFIKARHGEVRAILAHDN--MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFY 98 (358)
Q Consensus 21 ~~~~~~~h~~~v~~i~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 98 (358)
+...+.+|..+|+.+-+++. .+++++.|++|++||..+++..+ .+++|.+.+..++|+
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~--------------------~LrGHt~sv~di~~~ 159 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER--------------------SLRGHTDSVFDISFD 159 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh--------------------hhhccccceeEEEEe
Confidence 44556778899999888765 67777889999999999988743 558999999999999
Q ss_pred CCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeeccc
Q 038537 99 HAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQ 178 (358)
Q Consensus 99 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 178 (358)
..|++|++++.|=.+++||..+. ..++..+.+|+..|.+++|-|.|.++++++.|.+|+.|++.++.. ...+.+|
T Consensus 160 a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~c----v~t~~~h 234 (406)
T KOG0295|consen 160 ASGKYLATCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYC----VKTFPGH 234 (406)
T ss_pred cCccEEEecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccccee----EEeccCc
Confidence 99999999999999999999874 347888899999999999999999999999999999999976654 4566778
Q ss_pred CCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe--e----------e-----CCEEE
Q 038537 179 QSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV--A----------I-----EKLIF 241 (358)
Q Consensus 179 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~-----~~~l~ 241 (358)
...|..++.+. ||.++++++.|.++++|-+.+.. ....+..|..++-|++ | . ++++.
T Consensus 235 ~ewvr~v~v~~--DGti~As~s~dqtl~vW~~~t~~----~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~ 308 (406)
T KOG0295|consen 235 SEWVRMVRVNQ--DGTIIASCSNDQTLRVWVVATKQ----CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLG 308 (406)
T ss_pred hHhEEEEEecC--CeeEEEecCCCceEEEEEeccch----hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEE
Confidence 88999999987 99999999999999999988842 2233455555554443 2 1 25999
Q ss_pred EeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccc
Q 038537 242 SGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYS 321 (358)
Q Consensus 242 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~ 321 (358)
+++.|++|++||+.++ .++.++.+|.+.|.+++|+|. |+||+|+.+|+++++||++ ...|+..+
T Consensus 309 s~SrDktIk~wdv~tg----~cL~tL~ghdnwVr~~af~p~------Gkyi~ScaDDktlrvwdl~------~~~cmk~~ 372 (406)
T KOG0295|consen 309 SGSRDKTIKIWDVSTG----MCLFTLVGHDNWVRGVAFSPG------GKYILSCADDKTLRVWDLK------NLQCMKTL 372 (406)
T ss_pred eecccceEEEEeccCC----eEEEEEecccceeeeeEEcCC------CeEEEEEecCCcEEEEEec------cceeeecc
Confidence 9999999999999999 789999999999999999999 9999999999999999999 56788888
Q ss_pred cCCCCccceeeecccCCC
Q 038537 322 DYHSNSKTTTTKMDYEMS 339 (358)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~ 339 (358)
..|..- ....++|..
T Consensus 373 ~ah~hf---vt~lDfh~~ 387 (406)
T KOG0295|consen 373 EAHEHF---VTSLDFHKT 387 (406)
T ss_pred CCCcce---eEEEecCCC
Confidence 876643 455555554
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-35 Score=221.85 Aligned_cols=260 Identities=22% Similarity=0.363 Sum_probs=218.3
Q ss_pred eeeeeeeecccceEEEEecCC---EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEE
Q 038537 20 VERGFIKARHGEVRAILAHDN---MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMA 96 (358)
Q Consensus 20 ~~~~~~~~h~~~v~~i~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 96 (358)
..++.+.+|.+.+..+++++. .|++|+.|..|++|+...+........ .-.+|+..|..++
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~v----------------ld~~hkrsVRsvA 68 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTV----------------LDDGHKRSVRSVA 68 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEe----------------ccccchheeeeee
Confidence 345778899999999999755 899999999999999985332221111 1157999999999
Q ss_pred EeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeec
Q 038537 97 FYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLK 176 (358)
Q Consensus 97 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 176 (358)
|+|.|++|++|+.|.++.||.-..++.+++..+.+|+..|.|++|+++|++|++++.|..|-+|.+..+ ........+.
T Consensus 69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ded-dEfec~aVL~ 147 (312)
T KOG0645|consen 69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDED-DEFECIAVLQ 147 (312)
T ss_pred ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCC-CcEEEEeeec
Confidence 999999999999999999999988888899999999999999999999999999999999999998744 4555667788
Q ss_pred ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe--eeCCEEEEeeCCCeEEEEEc
Q 038537 177 FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV--AIEKLIFSGSEDTTIRVWRR 254 (358)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iwd~ 254 (358)
.|...|..+.|+| ...+|++++.|.+|++|+-.. .........+.+|...+.++. +.|..|++++.|++++||..
T Consensus 148 ~HtqDVK~V~WHP--t~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 148 EHTQDVKHVIWHP--TEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL 224 (312)
T ss_pred cccccccEEEEcC--CcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence 9999999999999 889999999999999998774 455677788999988886665 45789999999999999987
Q ss_pred CCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcce
Q 038537 255 AEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKT 315 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 315 (358)
.+. .-..|..++..++|. + ..|+|++.|+.|+++.-...++.+..
T Consensus 225 ~~~--------~~~~~sr~~Y~v~W~-~-------~~IaS~ggD~~i~lf~~s~~~d~p~~ 269 (312)
T KOG0645|consen 225 YTD--------LSGMHSRALYDVPWD-N-------GVIASGGGDDAIRLFKESDSPDEPSW 269 (312)
T ss_pred ccC--------cchhcccceEeeeec-c-------cceEeccCCCEEEEEEecCCCCCchH
Confidence 654 112478899999999 4 38999999999999988754444433
No 27
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.4e-37 Score=240.99 Aligned_cols=266 Identities=21% Similarity=0.333 Sum_probs=220.0
Q ss_pred CEEeeeCCCcEEEEeCCC---ceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCce
Q 038537 1 MVFTGSSSTRIRVWRQPD---CVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~---~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
|||+++.|.+..+|.+.. .+...++.+|..+|..+.| |+++|++|+.|..+++||+.++.......
T Consensus 238 yLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--------- 308 (519)
T KOG0293|consen 238 YLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--------- 308 (519)
T ss_pred eEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc---------
Confidence 689999999999998743 3457888999999998866 67899999999999999999998765543
Q ss_pred eeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccc-cccCeEEEEEcCCCCEEEEEeCC
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA-HESNVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 154 (358)
.+|...+.+++|.|||..+++|+.|+.+..||++... ....++ ....|.+++..+||.++++.+.|
T Consensus 309 ----------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~---~~~W~gvr~~~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 309 ----------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI---LGNWEGVRDPKVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred ----------cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch---hhcccccccceeEEEEEcCCCcEEEEEecc
Confidence 3466789999999999999999999999999998664 333332 23569999999999999999999
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccce----e
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFA----V 230 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----~ 230 (358)
..|++++..+...... -....+|++..++. ++.++++.-.+..+++||++.. .......||... -
T Consensus 376 ~~i~l~~~e~~~dr~l-----ise~~~its~~iS~--d~k~~LvnL~~qei~LWDl~e~----~lv~kY~Ghkq~~fiIr 444 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGL-----ISEEQPITSFSISK--DGKLALVNLQDQEIHLWDLEEN----KLVRKYFGHKQGHFIIR 444 (519)
T ss_pred cceeeechhhhhhhcc-----ccccCceeEEEEcC--CCcEEEEEcccCeeEEeecchh----hHHHHhhcccccceEEE
Confidence 9999999865543322 22467899999997 9999999999999999999973 333334455433 2
Q ss_pred EEEee-eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 231 LCLVA-IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 231 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.||.- +..++++|++|+.|+||+..++ +++.++.||...|++++|+|..+ .++|++|+||+||||....
T Consensus 445 SCFgg~~~~fiaSGSED~kvyIWhr~sg----kll~~LsGHs~~vNcVswNP~~p-----~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 445 SCFGGGNDKFIASGSEDSKVYIWHRISG----KLLAVLSGHSKTVNCVSWNPADP-----EMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eccCCCCcceEEecCCCceEEEEEccCC----ceeEeecCCcceeeEEecCCCCH-----HHhhccCCCCeEEEecCCc
Confidence 34433 4589999999999999999999 78999999999999999999865 7999999999999998764
No 28
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.1e-36 Score=220.90 Aligned_cols=246 Identities=18% Similarity=0.369 Sum_probs=206.3
Q ss_pred EEeeeCCCcEEEEeCCCce--eeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 2 VFTGSSSTRIRVWRQPDCV--ERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~--~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
||+|+. -.||+||+.++. ++..+.+|+..|.++.| +|..+++||+||+++|||++...+.+.
T Consensus 55 LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~------------- 120 (311)
T KOG0315|consen 55 LAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN------------- 120 (311)
T ss_pred hhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchh-------------
Confidence 455554 469999997654 68999999999999987 799999999999999999998554432
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccc-cccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF-VAHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
..|..+|+++..+|+...|++|..+|.|++||+.+.. +...+ .....+|.++...|+|.+++.+...|.
T Consensus 121 --------~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~--c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 121 --------YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS--CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN 190 (311)
T ss_pred --------ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc--cccccCCCCCcceeeEEEcCCCcEEEEecCCcc
Confidence 4577899999999999999999999999999998876 33332 334578999999999999999999999
Q ss_pred EEEEEceecCCc--ceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EE
Q 038537 157 VKIWRRVYRENS--HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LC 232 (358)
Q Consensus 157 i~~wd~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~ 232 (358)
+++|++...... ..+...++.|++.+..+.++| ++++|++++.|.+++||+.+.. +.....+.+|...+ ..
T Consensus 191 cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP--d~k~lat~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~ 265 (311)
T KOG0315|consen 191 CYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP--DVKYLATCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCA 265 (311)
T ss_pred EEEEEccCCCccccceEhhheecccceEEEEEECC--CCcEEEeecCCceEEEEecCCc---eeeEEEeecCCceEEeee
Confidence 999998764332 334556788999999999999 9999999999999999999883 35556678887666 55
Q ss_pred EeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEee
Q 038537 233 LVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAAS 280 (358)
Q Consensus 233 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~ 280 (358)
|+.++.||++|+.|+.+++||+..+ +.+....+|.....+++..
T Consensus 266 FS~dg~YlvTassd~~~rlW~~~~~----k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 266 FSADGEYLVTASSDHTARLWDLSAG----KEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eccCccEEEecCCCCceeecccccC----ceeeecCCcccccEEEEee
Confidence 6678999999999999999999999 5688889998888887764
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-36 Score=220.57 Aligned_cols=262 Identities=18% Similarity=0.274 Sum_probs=221.6
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEE--EecCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAI--LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i--~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
|.+|++.|.+|++||...+.+++++.+|...|..+ .+++..+++|+.|..+.+||+.+++..+
T Consensus 31 Y~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R--------------- 95 (307)
T KOG0316|consen 31 YCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDR--------------- 95 (307)
T ss_pred EEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeee---------------
Confidence 46899999999999999999999999999999976 5588899999999999999999998875
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
.+.+|.+.|+.+.|+.+...+++|+.|.++++||.+....++++.+......|.++... +..|++|+.||+++
T Consensus 96 -----r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvR 168 (307)
T KOG0316|consen 96 -----RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVR 168 (307)
T ss_pred -----ecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEE
Confidence 34699999999999999999999999999999999998888999999889999999986 67899999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee----EEEe
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV----LCLV 234 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~ 234 (358)
.||++.+.... .....+|+++.|++ +++..++++.|+++++.|-.+++ +.....+|...- .|+.
T Consensus 169 tydiR~G~l~s------Dy~g~pit~vs~s~--d~nc~La~~l~stlrLlDk~tGk----lL~sYkGhkn~eykldc~l~ 236 (307)
T KOG0316|consen 169 TYDIRKGTLSS------DYFGHPITSVSFSK--DGNCSLASSLDSTLRLLDKETGK----LLKSYKGHKNMEYKLDCCLN 236 (307)
T ss_pred EEEeecceeeh------hhcCCcceeEEecC--CCCEEEEeeccceeeecccchhH----HHHHhcccccceeeeeeeec
Confidence 99998776332 33467999999998 99999999999999999988843 444455665443 4445
Q ss_pred eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccc-eEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 235 AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGP-VRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 235 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~-v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
.....+++|++||.|++||+... ..+..+..|... |++++++|..+ .|+++. ++.+..|.-+
T Consensus 237 qsdthV~sgSEDG~Vy~wdLvd~----~~~sk~~~~~~v~v~dl~~hp~~~------~f~~A~-~~~~~~~~~~ 299 (307)
T KOG0316|consen 237 QSDTHVFSGSEDGKVYFWDLVDE----TQISKLSVVSTVIVTDLSCHPTMD------DFITAT-GHGDLFWYQE 299 (307)
T ss_pred ccceeEEeccCCceEEEEEeccc----eeeeeeccCCceeEEeeecccCcc------ceeEec-CCceeceeeh
Confidence 56789999999999999999988 567777777776 89999999843 444443 3456677544
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-36 Score=251.28 Aligned_cols=263 Identities=24% Similarity=0.328 Sum_probs=229.0
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
++++-..|.|.|||.++...++.+....-+|.+..| ..+.+++|+.|..|+||++++.+.+.
T Consensus 28 ~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~---------------- 91 (794)
T KOG0276|consen 28 ILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK---------------- 91 (794)
T ss_pred EEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeE----------------
Confidence 677889999999999999999999999999998776 57799999999999999999887664
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEE
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVK 158 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 158 (358)
.+.+|.+-|.|++.+|...+++++++|-+|++||.+. .+.+.+++.+|+..|.+++|+| |.+.+++++-|++|+
T Consensus 92 ----~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~-~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 92 ----TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ----EeeccccceeeeeecCCCCeEEecCCccEEEEeeccC-ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 4578999999999999999999999999999999974 4568899999999999999999 778999999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eee
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAI 236 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 236 (358)
+|.+. ......++++|...|+++.+-+.++..+|++|+.|..|++||.++ ......+.||...+.+. +|.
T Consensus 167 VWslg----s~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt----k~CV~TLeGHt~Nvs~v~fhp~ 238 (794)
T KOG0276|consen 167 VWSLG----SPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT----KSCVQTLEGHTNNVSFVFFHPE 238 (794)
T ss_pred EEEcC----CCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch----HHHHHHhhcccccceEEEecCC
Confidence 99994 334556778999999999999977888999999999999999998 56677788888877554 555
Q ss_pred CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
-..+++|++||+++||+..+- ++..++.-.-++|.+|+-.+. +..++.|.+.|.|.+
T Consensus 239 lpiiisgsEDGTvriWhs~Ty----~lE~tLn~gleRvW~I~~~k~------~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 239 LPIIISGSEDGTVRIWNSKTY----KLEKTLNYGLERVWCIAAHKG------DGKIAVGFDEGSVTV 295 (794)
T ss_pred CcEEEEecCCccEEEecCcce----ehhhhhhcCCceEEEEeecCC------CCeEEEeccCCcEEE
Confidence 689999999999999999886 556666667789999998887 567888877776654
No 31
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.5e-36 Score=239.83 Aligned_cols=264 Identities=20% Similarity=0.295 Sum_probs=223.5
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+||+|+.||.+|+|+. ++.++.++..|.++|.++.++ |++|++++.||++.+||..++.....+
T Consensus 249 ~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f------------- 314 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF------------- 314 (524)
T ss_pred eEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee-------------
Confidence 5899999999999995 566778999999999999995 779999999999999999877655432
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
.-|..+-..+.|-. ...+++++.|+.|+++.+.... ++.++.+|.++|.++.|+|.+.+|++++.|++++
T Consensus 315 -------~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~--P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tlk 384 (524)
T KOG0273|consen 315 -------EFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDR--PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLK 384 (524)
T ss_pred -------eeccCCccceEEec-CceEeecCCCceEEEEEecCCC--cceeeecccCceEEEEECCCCceEEEecCCCeeE
Confidence 34666667788864 4568999999999999998887 8999999999999999999999999999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecC-------CCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeE
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFF-------DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL 231 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 231 (358)
+|...... ....+..|...|..+.|+|.. .+..+++++.|++|++||+..+. ....+..|..+|.
T Consensus 385 iWs~~~~~----~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv----~i~~f~kH~~pVy 456 (524)
T KOG0273|consen 385 IWSMGQSN----SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV----PIHTLMKHQEPVY 456 (524)
T ss_pred eeecCCCc----chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc----eeEeeccCCCceE
Confidence 99974333 345567799999999999842 35689999999999999999844 3444777888886
Q ss_pred EE--eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 232 CL--VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 232 ~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
++ +|+++++++|+.||.|.+|+.+++ +.++.+.+ .+.|..++|+.+ |..|..+-.||.+++-|++
T Consensus 457 svafS~~g~ylAsGs~dg~V~iws~~~~----~l~~s~~~-~~~Ifel~Wn~~------G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 457 SVAFSPNGRYLASGSLDGCVHIWSTKTG----KLVKSYQG-TGGIFELCWNAA------GDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEecCCCcEEEecCCCCeeEeccccch----heeEeecC-CCeEEEEEEcCC------CCEEEEEecCCCceEEEec
Confidence 55 567999999999999999999998 55666644 566999999999 8899999999999999986
No 32
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-35 Score=238.62 Aligned_cols=277 Identities=18% Similarity=0.250 Sum_probs=223.5
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
++||+.|++|.+|+-+-.+....+..|..-|.|+.+ ||+++++++.||+|.+||-.+++.+.....
T Consensus 163 i~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~------------ 230 (603)
T KOG0318|consen 163 IATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED------------ 230 (603)
T ss_pred EEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC------------
Confidence 789999999999998888888999999999999966 788999999999999999998877654332
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcc------------------------------------
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRC------------------------------------ 123 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------------------------------------ 123 (358)
-.+|.+.|.+++|+||+..+++++.|.+++|||+.+.++
T Consensus 231 -----~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~l 305 (603)
T KOG0318|consen 231 -----SDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYL 305 (603)
T ss_pred -----CCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEe
Confidence 158999999999999999999999999999999876541
Q ss_pred -----cccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcce-------eeee-----------------
Q 038537 124 -----TCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHT-------LTMT----------------- 174 (358)
Q Consensus 124 -----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-------~~~~----------------- 174 (358)
..+..+.+|...|+++..+|++.+|++|+.||.|.-|+..++..... ....
T Consensus 306 n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~ 385 (603)
T KOG0318|consen 306 NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDT 385 (603)
T ss_pred cccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCe
Confidence 12233468999999999999999999999999999999765432210 0000
Q ss_pred ---------------------------------------------ec--------ccCCceeEEEEeecCCCcEEEEeec
Q 038537 175 ---------------------------------------------LK--------FQQSSVNALALSSFFDNYFLYSGSS 201 (358)
Q Consensus 175 ---------------------------------------------~~--------~~~~~i~~~~~~~~~~~~~l~~~~~ 201 (358)
++ .-.-...+++++| ++..+++|+.
T Consensus 386 l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~--~~~~vaVGG~ 463 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP--DGSEVAVGGQ 463 (603)
T ss_pred EEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC--CCCEEEEecc
Confidence 00 0011346677777 8999999999
Q ss_pred CCcEEEEEccCCcCCccccceeeccccee--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEe
Q 038537 202 DGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAA 279 (358)
Q Consensus 202 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~ 279 (358)
||.|++|.+..... ........|...+ .+++|++.+|++|...+.+.+||+.+.+. ....+.-|.+.|.+++|
T Consensus 464 Dgkvhvysl~g~~l--~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~---~~~~w~FHtakI~~~aW 538 (603)
T KOG0318|consen 464 DGKVHVYSLSGDEL--KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV---KTNRWAFHTAKINCVAW 538 (603)
T ss_pred cceEEEEEecCCcc--cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce---ecceeeeeeeeEEEEEe
Confidence 99999999987442 2233355666665 55678999999999999999999999853 33344459999999999
Q ss_pred ecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 280 SLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 280 ~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+|+ ..++||||.|-.|.||+++.
T Consensus 539 sP~------n~~vATGSlDt~Viiysv~k 561 (603)
T KOG0318|consen 539 SPN------NKLVATGSLDTNVIIYSVKK 561 (603)
T ss_pred CCC------ceEEEeccccceEEEEEccC
Confidence 999 78999999999999999985
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1e-35 Score=250.58 Aligned_cols=280 Identities=20% Similarity=0.288 Sum_probs=236.7
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec--CCEEEEEeCC-ceEEEEecccccccccccccccCCCceee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH--DNMLFTTNKD-CKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~~l~s~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
+|++|-..|...++.++...+++.+.-...+|..++++ |+.|+.|+.. |.+-||+..+...+.
T Consensus 279 ~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl-------------- 344 (893)
T KOG0291|consen 279 LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL-------------- 344 (893)
T ss_pred EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee--------------
Confidence 47899999999999999999999999988999999997 9999998754 899999998765442
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcE
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSV 157 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 157 (358)
..++|...+++++++|||+++++|+.||.|+|||...+- |..++..|++.|+.+.|+..++.+++++-||+|
T Consensus 345 ------KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf--C~vTFteHts~Vt~v~f~~~g~~llssSLDGtV 416 (893)
T KOG0291|consen 345 ------KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF--CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTV 416 (893)
T ss_pred ------eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce--EEEEeccCCCceEEEEEEecCCEEEEeecCCeE
Confidence 236899999999999999999999999999999999988 899999999999999999999999999999999
Q ss_pred EEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC-cEEEEEccCCcCCccccceeecccceeEE--Ee
Q 038537 158 KIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG-SINFWEKDKMSGGFNHGGFLQGHCFAVLC--LV 234 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~ 234 (358)
+.||+....+-..+.. .......|++..| .|..+.+|+.|. .|++|++++ .++...+.||.++|.+ ++
T Consensus 417 RAwDlkRYrNfRTft~---P~p~QfscvavD~--sGelV~AG~~d~F~IfvWS~qT----GqllDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 417 RAWDLKRYRNFRTFTS---PEPIQFSCVAVDP--SGELVCAGAQDSFEIFVWSVQT----GQLLDILSGHEGPVSGLSFS 487 (893)
T ss_pred EeeeecccceeeeecC---CCceeeeEEEEcC--CCCEEEeeccceEEEEEEEeec----CeeeehhcCCCCcceeeEEc
Confidence 9999976555444432 2344567788877 889999998876 599999999 4566678999999975 67
Q ss_pred eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcc
Q 038537 235 AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEK 314 (358)
Q Consensus 235 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 314 (358)
|.+..|++++.|.+||+||+..... .+.++ .+...+++++|+|+ |+.|+++..||.|.+||++...+...
T Consensus 488 ~~~~~LaS~SWDkTVRiW~if~s~~---~vEtl-~i~sdvl~vsfrPd------G~elaVaTldgqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 488 PDGSLLASGSWDKTVRIWDIFSSSG---TVETL-EIRSDVLAVSFRPD------GKELAVATLDGQITFFDIKEAVQVGS 557 (893)
T ss_pred cccCeEEeccccceEEEEEeeccCc---eeeeE-eeccceeEEEEcCC------CCeEEEEEecceEEEEEhhhceeecc
Confidence 8899999999999999999987632 23333 46678999999999 89999999999999999987665544
Q ss_pred eeecccc
Q 038537 315 TMCLDYS 321 (358)
Q Consensus 315 ~~~~~~~ 321 (358)
..+...+
T Consensus 558 IdgrkD~ 564 (893)
T KOG0291|consen 558 IDGRKDL 564 (893)
T ss_pred ccchhhc
Confidence 4444433
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-36 Score=234.98 Aligned_cols=247 Identities=23% Similarity=0.345 Sum_probs=216.0
Q ss_pred eeeeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEE
Q 038537 20 VERGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAF 97 (358)
Q Consensus 20 ~~~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 97 (358)
+..+.+.+|.+.|.|+.++ +.+|++|+.|++|+|||+.+++... ++.+|...|..+++
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl--------------------tltGhi~~vr~vav 201 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL--------------------TLTGHIETVRGVAV 201 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE--------------------eecchhheeeeeee
Confidence 4556788999999999886 5699999999999999999987642 55799999999999
Q ss_pred eCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecc
Q 038537 98 YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKF 177 (358)
Q Consensus 98 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 177 (358)
++-..++++++.|+.|+.||++..+ .++.+.+|-+.|.|++.+|.-..|++|+.|..+++||+++.. ....+.+
T Consensus 202 S~rHpYlFs~gedk~VKCwDLe~nk--vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~----~V~~l~G 275 (460)
T KOG0285|consen 202 SKRHPYLFSAGEDKQVKCWDLEYNK--VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA----SVHVLSG 275 (460)
T ss_pred cccCceEEEecCCCeeEEEechhhh--hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc----eEEEecC
Confidence 9999999999999999999999988 899999999999999999999999999999999999997665 3566788
Q ss_pred cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEeeeCCEEEEeeCCCeEEEEEcC
Q 038537 178 QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRA 255 (358)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~ 255 (358)
|..+|..+.+.| -...+++|+.|++|++||++.++.. ..+..|...+ ++++|....+++++.|. |+-|++.
T Consensus 276 H~~~V~~V~~~~--~dpqvit~S~D~tvrlWDl~agkt~----~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p 348 (460)
T KOG0285|consen 276 HTNPVASVMCQP--TDPQVITGSHDSTVRLWDLRAGKTM----ITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLP 348 (460)
T ss_pred CCCcceeEEeec--CCCceEEecCCceEEEeeeccCcee----EeeecccceeeEEecCCchhhhhccCCcc-ceeccCC
Confidence 999999999998 7788999999999999999985432 3355666655 45567788899998876 9999999
Q ss_pred CCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 256 EGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 256 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
.+ +.+..+.+|...|++++.+.| .++++|++.|.+.+||-+...
T Consensus 349 ~g----~f~~nlsgh~~iintl~~nsD-------~v~~~G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 349 EG----EFLQNLSGHNAIINTLSVNSD-------GVLVSGGDNGSIMFWDWKSGH 392 (460)
T ss_pred cc----chhhccccccceeeeeeeccC-------ceEEEcCCceEEEEEecCcCc
Confidence 98 567779999999999999987 589999999999999998644
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-36 Score=256.48 Aligned_cols=271 Identities=21% Similarity=0.347 Sum_probs=233.9
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
++++-..|.|++||..-+.++..|..|.++|..+.|+ ..++++|+.|-.|+||++.+.+++.
T Consensus 24 ILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf---------------- 87 (1202)
T KOG0292|consen 24 ILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF---------------- 87 (1202)
T ss_pred EEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh----------------
Confidence 6788899999999999999999999999999999996 4589999999999999999887763
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
++.||-+-|..+.|++.-.+++++|+|.+|+||+..+.+ ++..+.+|...|.|..|+|....+++++-|.+||+
T Consensus 88 ----tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~--~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 88 ----TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK--CIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred ----hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc--eEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 567999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EEceecCC-------------------------cceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCc
Q 038537 160 WRRVYREN-------------------------SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMS 214 (358)
Q Consensus 160 wd~~~~~~-------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 214 (358)
||+..-+. .......+.+|...|+.++|+| .-.+|++|+.|+.|++|.+...+
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp--TlpliVSG~DDRqVKlWrmnetK 239 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP--TLPLIVSGADDRQVKLWRMNETK 239 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC--CcceEEecCCcceeeEEEecccc
Confidence 99742111 1123456789999999999998 88999999999999999987622
Q ss_pred CCccccceeecccceeEEEeee--CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEE
Q 038537 215 GGFNHGGFLQGHCFAVLCLVAI--EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLV 292 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l 292 (358)
.-......+|..+|.++-++ .+++++.++|+.|++||+... ..+.+++...+.-+.++.+|. .+++
T Consensus 240 --aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR----t~v~tfrrendRFW~laahP~------lNLf 307 (1202)
T KOG0292|consen 240 --AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR----TSVQTFRRENDRFWILAAHPE------LNLF 307 (1202)
T ss_pred --ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc----cceeeeeccCCeEEEEEecCC------ccee
Confidence 23345578899888776554 599999999999999999887 668888777889999999998 5566
Q ss_pred EEccCCCcEEEEEeeeC
Q 038537 293 YSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 293 ~s~~~dg~v~iw~~~~~ 309 (358)
++| .|+-+.+|.++..
T Consensus 308 AAg-HDsGm~VFkleRE 323 (1202)
T KOG0292|consen 308 AAG-HDSGMIVFKLERE 323 (1202)
T ss_pred eee-cCCceEEEEEccc
Confidence 555 6777889998743
No 36
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.4e-36 Score=217.83 Aligned_cols=248 Identities=22% Similarity=0.293 Sum_probs=215.4
Q ss_pred eeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEe
Q 038537 21 ERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFY 98 (358)
Q Consensus 21 ~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 98 (358)
....+.+|.++|.++.+ +|++.++++.|.+|++|+...+.+++ ++.+|...|..++.+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik--------------------tYsghG~EVlD~~~s 68 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK--------------------TYSGHGHEVLDAALS 68 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee--------------------eecCCCceeeecccc
Confidence 34677899999999988 58999999999999999998887765 457899999999999
Q ss_pred CCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeeccc
Q 038537 99 HAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQ 178 (358)
Q Consensus 99 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 178 (358)
.|+..+++|+.|..+.+||+.+++ ..+.+.+|.+.|+.+.|+.+...+++|+.|.++++||.+.... ++...+...
T Consensus 69 ~Dnskf~s~GgDk~v~vwDV~TGk--v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~--ePiQildea 144 (307)
T KOG0316|consen 69 SDNSKFASCGGDKAVQVWDVNTGK--VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF--EPIQILDEA 144 (307)
T ss_pred ccccccccCCCCceEEEEEcccCe--eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC--Cccchhhhh
Confidence 999999999999999999999999 8999999999999999999999999999999999999986543 344455556
Q ss_pred CCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCc
Q 038537 179 QSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 179 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 258 (358)
...|.++.+. +..|++|+.||+++.||++.+ .......+|+...++++++++..++++.|+++++.|-.++
T Consensus 145 ~D~V~Si~v~----~heIvaGS~DGtvRtydiR~G----~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG- 215 (307)
T KOG0316|consen 145 KDGVSSIDVA----EHEIVAGSVDGTVRTYDIRKG----TLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG- 215 (307)
T ss_pred cCceeEEEec----ccEEEeeccCCcEEEEEeecc----eeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchh-
Confidence 7788888884 678999999999999999984 3444466888888999999999999999999999999999
Q ss_pred eeeeeeeeecCcccceEEE--EeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 259 CYHECLAVLDGHRGPVRCL--AASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 259 ~~~~~~~~~~~h~~~v~~i--~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
+.+..+++|.+.=..+ +++.. ...+++||+||.|.+||+.+..
T Consensus 216 ---klL~sYkGhkn~eykldc~l~qs------dthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 216 ---KLLKSYKGHKNMEYKLDCCLNQS------DTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred ---HHHHHhcccccceeeeeeeeccc------ceeEEeccCCceEEEEEeccce
Confidence 6788999998755444 44444 6799999999999999998643
No 37
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.1e-36 Score=253.86 Aligned_cols=225 Identities=23% Similarity=0.371 Sum_probs=195.1
Q ss_pred CEEeeeCCCcEEEEeCCC-------------------------------ceeeeeeeecccceEEEEe--cCCEEEEEeC
Q 038537 1 MVFTGSSSTRIRVWRQPD-------------------------------CVERGFIKARHGEVRAILA--HDNMLFTTNK 47 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~-------------------------------~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~ 47 (358)
+||.|-.|..|++|.+.. ......+.+|.++|...+| +.++|++++.
T Consensus 392 mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSE 471 (707)
T KOG0263|consen 392 MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSE 471 (707)
T ss_pred hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccC
Confidence 477888999999998752 1123457899999998866 6789999999
Q ss_pred CceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccc
Q 038537 48 DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVD 127 (358)
Q Consensus 48 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 127 (358)
|+++|+|.+.+..++- .+.||..+|+++.|+|.|-++||++.|++.++|...... +.+
T Consensus 472 D~svRLWsl~t~s~~V--------------------~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~--PlR 529 (707)
T KOG0263|consen 472 DSSVRLWSLDTWSCLV--------------------IYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK--PLR 529 (707)
T ss_pred CcceeeeecccceeEE--------------------EecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC--chh
Confidence 9999999999876542 336999999999999999999999999999999998877 899
Q ss_pred cccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEE
Q 038537 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINF 207 (358)
Q Consensus 128 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 207 (358)
.+.+|-+.|.|+.|+|+.+++++|+.|.+|++||+.++.. .+.+.+|.++|.+++|+| +|.+|++|+.||.|.+
T Consensus 530 ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~----VRiF~GH~~~V~al~~Sp--~Gr~LaSg~ed~~I~i 603 (707)
T KOG0263|consen 530 IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS----VRIFTGHKGPVTALAFSP--CGRYLASGDEDGLIKI 603 (707)
T ss_pred hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcE----EEEecCCCCceEEEEEcC--CCceEeecccCCcEEE
Confidence 9999999999999999999999999999999999976653 566788999999999999 9999999999999999
Q ss_pred EEccCCcCCccccceeecccceeEEE--eeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 208 WEKDKMSGGFNHGGFLQGHCFAVLCL--VAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 208 ~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
||+..+ .....+.+|...+.++ +.+|..|++|+.|.+|++||+...
T Consensus 604 WDl~~~----~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 604 WDLANG----SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEcCCC----cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999984 4444467777777554 568999999999999999998653
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.5e-35 Score=249.04 Aligned_cols=290 Identities=20% Similarity=0.364 Sum_probs=247.9
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
++..+.|..+.++|.++.+....+-|..+.|.++.+- .++++.++..+.+++|+..+..+.
T Consensus 296 ~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---------------- 359 (775)
T KOG0319|consen 296 LLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---------------- 359 (775)
T ss_pred eEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE----------------
Confidence 4566778899999999999999999999999999884 489999999999999988776553
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCc--ccccccccccccCeEEEEEcCC-CCEEEEEeCCC
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR--CTCVDSFVAHESNVNAIVVNQD-DGFVFTCSSDG 155 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg 155 (358)
.+.+|.+.|.+++...+|.+|++|+.|.++++|.++++. ..++....+|+..|.+++++.. ..+|++++.|+
T Consensus 360 -----ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~ 434 (775)
T KOG0319|consen 360 -----IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDC 434 (775)
T ss_pred -----EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCc
Confidence 347999999999966678899999999999999884432 2355666789999999999764 45899999999
Q ss_pred cEEEEEceecCCcce-ee----eeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee
Q 038537 156 SVKIWRRVYRENSHT-LT----MTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV 230 (358)
Q Consensus 156 ~i~~wd~~~~~~~~~-~~----~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 230 (358)
++++|++...+.... +. .....|...|++++++| +..++++|+.|++.+||++.. ..+...+.+|...+
T Consensus 435 tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~--ndkLiAT~SqDktaKiW~le~----~~l~~vLsGH~RGv 508 (775)
T KOG0319|consen 435 TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP--NDKLIATGSQDKTAKIWDLEQ----LRLLGVLSGHTRGV 508 (775)
T ss_pred eEEEecCCCcccccccceehhhHHHHhhcccccceEecC--CCceEEecccccceeeecccC----ceEEEEeeCCccce
Confidence 999999976332222 11 23467999999999999 999999999999999999995 67777899999988
Q ss_pred EEEee--eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 231 LCLVA--IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 231 ~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.|+++ ..+.+++++.|++|+||.+.+. .++.++.||...|..+.|-.+ +..|+|++.||-+++|+++
T Consensus 509 w~V~Fs~~dq~laT~SgD~TvKIW~is~f----SClkT~eGH~~aVlra~F~~~------~~qliS~~adGliKlWnik- 577 (775)
T KOG0319|consen 509 WCVSFSKNDQLLATCSGDKTVKIWSISTF----SCLKTFEGHTSAVLRASFIRN------GKQLISAGADGLIKLWNIK- 577 (775)
T ss_pred EEEEeccccceeEeccCCceEEEEEeccc----eeeeeecCccceeEeeeeeeC------CcEEEeccCCCcEEEEecc-
Confidence 77665 5579999999999999999998 789999999999999999999 8999999999999999999
Q ss_pred CCCCcceeecccccCCCCccceeeec
Q 038537 309 MPDQEKTMCLDYSDYHSNSKTTTTKM 334 (358)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (358)
+..|...++.|.+........
T Consensus 578 -----t~eC~~tlD~H~DrvWaL~~~ 598 (775)
T KOG0319|consen 578 -----TNECEMTLDAHNDRVWALSVS 598 (775)
T ss_pred -----chhhhhhhhhccceeEEEeec
Confidence 788999999998876554443
No 39
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=222.93 Aligned_cols=276 Identities=18% Similarity=0.320 Sum_probs=228.8
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCC--EEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDN--MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++++.||.-.+-+-+++.-+.++.+|.+.|+....+.+ ..++++.|-+-++||.-++..+..
T Consensus 31 flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs-------------- 96 (334)
T KOG0278|consen 31 FLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS-------------- 96 (334)
T ss_pred EEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh--------------
Confidence 4789999999999999999999999999999998887654 678889999999999998877654
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
..|..-|.+++|+.|.++|++|+.+..++|+|++..+. +...+.+|.+.|..+.|....+.|++++.|+.||
T Consensus 97 -------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A-pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR 168 (334)
T KOG0278|consen 97 -------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA-PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVR 168 (334)
T ss_pred -------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC-CchhhcCCCCcceeEEEeccCceEEeeccCCceE
Confidence 35777899999999999999999999999999987763 5677889999999999999889999999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCC
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEK 238 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (358)
+||.+++.....+. .+..|+++.+++ ++.+|.++ ..+.|.+||..+....... .........+++|+..
T Consensus 169 LWD~rTgt~v~sL~-----~~s~VtSlEvs~--dG~ilTia-~gssV~Fwdaksf~~lKs~---k~P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 169 LWDHRTGTEVQSLE-----FNSPVTSLEVSQ--DGRILTIA-YGSSVKFWDAKSFGLLKSY---KMPCNVESASLHPKKE 237 (334)
T ss_pred EEEeccCcEEEEEe-----cCCCCcceeecc--CCCEEEEe-cCceeEEeccccccceeec---cCccccccccccCCCc
Confidence 99999887655554 378899999998 77766555 5678999998873322111 1122334467889999
Q ss_pred EEEEeeCCCeEEEEEcCCCceeeeeeee-ecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceee
Q 038537 239 LIFSGSEDTTIRVWRRAEGGCYHECLAV-LDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMC 317 (358)
Q Consensus 239 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 317 (358)
.+++|++|+.++.||..+++ .+.. .++|.++|.++.|+|+ |...++||.||+|++|.+...+......|
T Consensus 238 ~fVaGged~~~~kfDy~Tge----Ei~~~nkgh~gpVhcVrFSPd------GE~yAsGSEDGTirlWQt~~~~~~~~~~~ 307 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGE----EIGSYNKGHFGPVHCVRFSPD------GELYASGSEDGTIRLWQTTPGKTYGLWKC 307 (334)
T ss_pred eEEecCcceEEEEEeccCCc----eeeecccCCCCceEEEEECCC------CceeeccCCCceEEEEEecCCCchhhccc
Confidence 99999999999999999994 4555 4899999999999999 88999999999999999886554433334
Q ss_pred cc
Q 038537 318 LD 319 (358)
Q Consensus 318 ~~ 319 (358)
..
T Consensus 308 ~~ 309 (334)
T KOG0278|consen 308 VK 309 (334)
T ss_pred cC
Confidence 33
No 40
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.7e-34 Score=243.25 Aligned_cols=287 Identities=22% Similarity=0.346 Sum_probs=221.2
Q ss_pred CEEeeeCCCcEEEEeCCCcee--eeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccc-----------
Q 038537 1 MVFTGSSSTRIRVWRQPDCVE--RGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTK----------- 65 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~--~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~----------- 65 (358)
+|++|+.|.++|+|.+...+- ...+.+|+..|.+..+ +...+++.+.||.+.+|.....-.....
T Consensus 159 ~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~ 238 (893)
T KOG0291|consen 159 LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDE 238 (893)
T ss_pred eEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccc
Confidence 588999999999999976665 6778899999998776 5668999999999999987721000000
Q ss_pred -----------c-------ccccCCC-ceee--e------------------------ecCCCccccCCCceEEEEEeCC
Q 038537 66 -----------K-------VTTLPRR-SSFL--S------------------------FSKSNTQQQHRDCVSCMAFYHA 100 (358)
Q Consensus 66 -----------~-------~~~~~~~-~~~~--~------------------------~~~~~~~~~h~~~v~~~~~~~~ 100 (358)
+ ...+.+. .... . +...+.+.-...+|..++|+..
T Consensus 239 ~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~t 318 (893)
T KOG0291|consen 239 EMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNST 318 (893)
T ss_pred cccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEeccc
Confidence 0 0000000 0000 0 0111122233456788888888
Q ss_pred CCEEEEEecC-CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccC
Q 038537 101 EGLLYTGSFD-KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ 179 (358)
Q Consensus 101 ~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 179 (358)
|..|+.|+.. |.+.||+..... .+...++|...+++++++|||+++++|++||.|++||...+ -...++..|.
T Consensus 319 GDWiA~g~~klgQLlVweWqsEs--YVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg----fC~vTFteHt 392 (893)
T KOG0291|consen 319 GDWIAFGCSKLGQLLVWEWQSES--YVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG----FCFVTFTEHT 392 (893)
T ss_pred CCEEEEcCCccceEEEEEeeccc--eeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc----eEEEEeccCC
Confidence 8888887654 789999998877 67778899999999999999999999999999999998543 3556778899
Q ss_pred CceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceee---cccceeEEEeeeCCEEEEeeCCC-eEEEEEcC
Q 038537 180 SSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ---GHCFAVLCLVAIEKLIFSGSEDT-TIRVWRRA 255 (358)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~ 255 (358)
+.|+.+.|+. .++.+++++.||+|+.||+.... ..+.+. .-....++..|.|.++++|+.|. .|.+|+++
T Consensus 393 s~Vt~v~f~~--~g~~llssSLDGtVRAwDlkRYr----NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~q 466 (893)
T KOG0291|consen 393 SGVTAVQFTA--RGNVLLSSSLDGTVRAWDLKRYR----NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQ 466 (893)
T ss_pred CceEEEEEEe--cCCEEEEeecCCeEEeeeecccc----eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEee
Confidence 9999999998 99999999999999999998732 222222 22233455566799999999775 59999999
Q ss_pred CCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 256 EGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 256 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
+| +.+..+.||.+||.+++|+|. +..|+|+|.|.+||+||+-..
T Consensus 467 TG----qllDiLsGHEgPVs~l~f~~~------~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 467 TG----QLLDILSGHEGPVSGLSFSPD------GSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred cC----eeeehhcCCCCcceeeEEccc------cCeEEeccccceEEEEEeecc
Confidence 99 789999999999999999999 889999999999999999654
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=3.8e-34 Score=236.25 Aligned_cols=263 Identities=34% Similarity=0.528 Sum_probs=217.9
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++++.||.|++|++.+++....+..|...+..+.+ +++.+++++.||.|++|++...+...
T Consensus 23 ~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~--------------- 87 (289)
T cd00200 23 LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR--------------- 87 (289)
T ss_pred EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE---------------
Confidence 4788999999999999998888888999999987776 45699999999999999998754322
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
.+..|...|.++.|+|++.++++++.|+.|.+||+.+.+ ....+..|...+.+++|+|++.++++++.|+.|+
T Consensus 88 -----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 88 -----TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK--CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred -----EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE--EEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 235678889999999998888888889999999998776 5666778889999999999989888888899999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eee
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAI 236 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 236 (358)
+||++.++. ...+..+...+.++.++| +++.+++++.++.|++||++.... ...+..|...+.++ +++
T Consensus 161 i~d~~~~~~----~~~~~~~~~~i~~~~~~~--~~~~l~~~~~~~~i~i~d~~~~~~----~~~~~~~~~~i~~~~~~~~ 230 (289)
T cd00200 161 LWDLRTGKC----VATLTGHTGEVNSVAFSP--DGEKLLSSSSDGTIKLWDLSTGKC----LGTLRGHENGVNSVAFSPD 230 (289)
T ss_pred EEEcccccc----ceeEecCccccceEEECC--CcCEEEEecCCCcEEEEECCCCce----ecchhhcCCceEEEEEcCC
Confidence 999965443 333446778999999998 888999999999999999987332 22233455455544 455
Q ss_pred CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
+.++++++.||.|++||+.++ +....+..|...|.+++|+|+ +.+|++++.||.|++|+
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~----~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTG----ECVQTLSGHTNSVTSLAWSPD------GKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCc----eeEEEccccCCcEEEEEECCC------CCEEEEecCCCeEEecC
Confidence 678888888999999999987 566777789999999999998 78999999999999996
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.3e-36 Score=236.48 Aligned_cols=238 Identities=22% Similarity=0.321 Sum_probs=202.9
Q ss_pred ccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEE
Q 038537 29 HGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYT 106 (358)
Q Consensus 29 ~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 106 (358)
..+|..+.+ +|+.|++|+..|.+.+|+...-. ....+++|..+|+++.|++++.++++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn--------------------FEtilQaHDs~Vr~m~ws~~g~wmiS 155 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN--------------------FETILQAHDSPVRTMKWSHNGTWMIS 155 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceee--------------------HHHHhhhhcccceeEEEccCCCEEEE
Confidence 346667766 68899999999999999974221 11245799999999999999999999
Q ss_pred EecCCeEEEEEccCCcccccccccccc-cCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEE
Q 038537 107 GSFDKTVKAWRVLDKRCTCVDSFVAHE-SNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNAL 185 (358)
Q Consensus 107 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~ 185 (358)
|+.+|.|++|+..-.. +..++.|. ..|++++|+|+...|++++.||+|+|||....++ ...+.+|.-.|.++
T Consensus 156 gD~gG~iKyWqpnmnn---Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke----e~vL~GHgwdVksv 228 (464)
T KOG0284|consen 156 GDKGGMIKYWQPNMNN---VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE----ERVLRGHGWDVKSV 228 (464)
T ss_pred cCCCceEEecccchhh---hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch----hheeccCCCCccee
Confidence 9999999999987654 55556555 8999999999999999999999999999865543 34457899999999
Q ss_pred EEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe--eeCCEEEEeeCCCeEEEEEcCCCceeeee
Q 038537 186 ALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV--AIEKLIFSGSEDTTIRVWRRAEGGCYHEC 263 (358)
Q Consensus 186 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 263 (358)
+|+| ...++++|+.|..|++||.+++. ....+.+|...|+.+. +++++|++++.|..++++|+++. +.
T Consensus 229 dWHP--~kgLiasgskDnlVKlWDprSg~----cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m----kE 298 (464)
T KOG0284|consen 229 DWHP--TKGLIASGSKDNLVKLWDPRSGS----CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM----KE 298 (464)
T ss_pred ccCC--ccceeEEccCCceeEeecCCCcc----hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh----HH
Confidence 9999 88999999999999999999944 4445778888887665 56899999999999999999976 56
Q ss_pred eeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 264 LAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 264 ~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+..+++|...|+++.|+|-. ..+|.+|+.||.|..|.+..
T Consensus 299 l~~~r~Hkkdv~~~~WhP~~-----~~lftsgg~Dgsvvh~~v~~ 338 (464)
T KOG0284|consen 299 LFTYRGHKKDVTSLTWHPLN-----ESLFTSGGSDGSVVHWVVGL 338 (464)
T ss_pred HHHhhcchhhheeecccccc-----ccceeeccCCCceEEEeccc
Confidence 88899999999999999975 47999999999999999983
No 43
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=6.2e-35 Score=251.63 Aligned_cols=264 Identities=28% Similarity=0.453 Sum_probs=232.9
Q ss_pred CEEeeeCCCcEEEEeCCCceeeee-eeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGF-IKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~-~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
++++++.|++|++||..++..+.. +.+|.+.|.++.+. ++.+++|+.|.++++||..++++..
T Consensus 220 ~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~-------------- 285 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH-------------- 285 (537)
T ss_pred eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE--------------
Confidence 367999999999999999999888 99999999999997 8999999999999999999998864
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcE
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSV 157 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 157 (358)
.+.+|.+.|.++.. .+..+++|+.|.+|++|++.++. .+..+.+|.++|.++..+ +.++++|+.|+.|
T Consensus 286 ------~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~--~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v 353 (537)
T KOG0274|consen 286 ------SLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGA--CLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTV 353 (537)
T ss_pred ------EecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcc--eEEEeccccccEEEEEec--CCEEEEEecCceE
Confidence 55789999999988 44678889999999999999888 788888899999999997 8899999999999
Q ss_pred EEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeC
Q 038537 158 KIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE 237 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (358)
++||+. ..+....+.+|...|.++.+.. . ..+++|+.|+.|++||+++.. .....+.+|...+..+...+
T Consensus 354 ~VW~~~----~~~cl~sl~gH~~~V~sl~~~~--~-~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l~~~~ 423 (537)
T KOG0274|consen 354 KVWDPR----TGKCLKSLSGHTGRVYSLIVDS--E-NRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSLLLRD 423 (537)
T ss_pred EEEEhh----hceeeeeecCCcceEEEEEecC--c-ceEEeeeeccceEeecCCchh---hhhhhhcCCccccccccccc
Confidence 999996 4456677788999999998753 2 999999999999999999842 56666888998888888999
Q ss_pred CEEEEeeCCCeEEEEEcCCCceeeeeeeeecC-cccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCC
Q 038537 238 KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDG-HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQ 312 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 312 (358)
++|++++.|+.|++||..++ +++.++.+ |...|+.+++.. ..+++++.||.+++||+++.+..
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~----~~~~~~~~~~~~~v~~l~~~~--------~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEG----ECLRTLEGRHVGGVSALALGK--------EEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred ceeEeccccccEEEeecccC----ceeeeeccCCcccEEEeecCc--------ceEEEEecCCeeEEEecccCchh
Confidence 99999999999999999998 67788888 778999998872 37888899999999999975443
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-35 Score=245.34 Aligned_cols=247 Identities=23% Similarity=0.380 Sum_probs=219.0
Q ss_pred eeeecccceEEEEecC--CEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCC
Q 038537 24 FIKARHGEVRAILAHD--NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAE 101 (358)
Q Consensus 24 ~~~~h~~~v~~i~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 101 (358)
.+..++..|.++.+++ ..++++-.+|.|.|||.++...++.+.+. .-+|.+..|-+..
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~--------------------~~PvRa~kfiaRk 67 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS--------------------EVPVRAAKFIARK 67 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec--------------------ccchhhheeeecc
Confidence 4455888899988764 48889999999999999998887665543 4458888998888
Q ss_pred CEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCc
Q 038537 102 GLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSS 181 (358)
Q Consensus 102 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 181 (358)
+.+++|++|..|++|+..+.+ .+..|..|.+.|.+++.+|...++++++.|-.|++||.. ..+.....+.+|...
T Consensus 68 nWiv~GsDD~~IrVfnynt~e--kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we---~~wa~~qtfeGH~Hy 142 (794)
T KOG0276|consen 68 NWIVTGSDDMQIRVFNYNTGE--KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE---NEWACEQTFEGHEHY 142 (794)
T ss_pred ceEEEecCCceEEEEecccce--eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc---CceeeeeEEcCcceE
Confidence 999999999999999999998 899999999999999999999999999999999999985 667778899999999
Q ss_pred eeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee----eCCEEEEeeCCCeEEEEEcCCC
Q 038537 182 VNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA----IEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 182 i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
|.+++|.| .|.+.+++++.|++|++|.+.... ...++.+|...|.|+.. +..+|++|+.|..|+|||.++.
T Consensus 143 VMqv~fnP-kD~ntFaS~sLDrTVKVWslgs~~----~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 143 VMQVAFNP-KDPNTFASASLDRTVKVWSLGSPH----PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred EEEEEecC-CCccceeeeeccccEEEEEcCCCC----CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH
Confidence 99999999 678899999999999999999843 33447799999988876 3469999999999999999998
Q ss_pred ceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 258 GCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 258 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
.+++++.||...|..+.|+|.. .+++|||+||++|||+-.+..
T Consensus 218 ----~CV~TLeGHt~Nvs~v~fhp~l------piiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 218 ----SCVQTLEGHTNNVSFVFFHPEL------PIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred ----HHHHHhhcccccceEEEecCCC------cEEEEecCCccEEEecCccee
Confidence 7899999999999999999994 499999999999999987644
No 45
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.7e-36 Score=229.68 Aligned_cols=271 Identities=23% Similarity=0.311 Sum_probs=230.1
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeee--------eecccceEEEEe--cCCEEEEEeCCceEEEEeccccccccccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFI--------KARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~--------~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 70 (358)
||++|+.||-|.+||..+++..+-+ .-+..+|.|+.| +...+++|+.||.|++|.+.++.+++.+.
T Consensus 227 yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd---- 302 (508)
T KOG0275|consen 227 YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD---- 302 (508)
T ss_pred eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh----
Confidence 6899999999999999988876543 346789999988 56799999999999999999999987655
Q ss_pred CCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEE
Q 038537 71 PRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFT 150 (358)
Q Consensus 71 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 150 (358)
.+|...|+|+.|+.|+..+++++.|.++++.-+..++ ++..+.+|++.|+...|.++|..+++
T Consensus 303 ---------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK--~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 303 ---------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK--CLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred ---------------hhhccCeeEEEEccCcchhhcccccceEEEeccccch--hHHHhcCccccccceEEcCCCCeEEE
Confidence 5899999999999999999999999999999999999 89999999999999999999999999
Q ss_pred EeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee
Q 038537 151 CSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV 230 (358)
Q Consensus 151 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 230 (358)
++.||+|++|+..+.+....+.. .+...+|..+...| .+...++++....++++-++...-..........+...-.
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~--~~~d~~vnsv~~~P-Knpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~ 442 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKP--LGTDYPVNSVILLP-KNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFIN 442 (508)
T ss_pred ecCCccEEEecCcchhhhhhccC--CCCcccceeEEEcC-CCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEE
Confidence 99999999999988776655433 23567888888888 4678899999999999999875211111111122333344
Q ss_pred EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 231 LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 231 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
.+++|.|.++++.++|+.++.|...++ ....++.-|...|..++-+|. .++|++-++||.+++|.
T Consensus 443 ~~lSpkGewiYcigED~vlYCF~~~sG----~LE~tl~VhEkdvIGl~HHPH------qNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 443 AILSPKGEWIYCIGEDGVLYCFSVLSG----KLERTLPVHEKDVIGLTHHPH------QNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEecCCCcEEEEEccCcEEEEEEeecC----ceeeeeecccccccccccCcc------cchhhhhcccchhhhcC
Confidence 678899999999999999999999999 567788889999999999999 77999999999999995
No 46
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-34 Score=217.89 Aligned_cols=265 Identities=17% Similarity=0.260 Sum_probs=216.7
Q ss_pred EEeeeCCCcEEEEeCCC------------ceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPD------------CVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTT 69 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~------------~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 69 (358)
|++|++...|.=+++.- ..++..+..|.++|++++.++.++++||.|-+|+|||+.......
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg------ 77 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLG------ 77 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhc------
Confidence 67899988887777631 123556788999999999999999999999999999998766543
Q ss_pred cCCCceeeeecCCCccccCCCceEEEEEeCCCC--EEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCE
Q 038537 70 LPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEG--LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGF 147 (358)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 147 (358)
.+-.|.+.|+++.|.++-. .|++|+.||.|.+|+...-. .+..+++|.+.|+.++++|.+++
T Consensus 78 --------------~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~--~~~slK~H~~~Vt~lsiHPS~KL 141 (362)
T KOG0294|consen 78 --------------ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE--LLKSLKAHKGQVTDLSIHPSGKL 141 (362)
T ss_pred --------------ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE--EeeeecccccccceeEecCCCce
Confidence 3467999999999998765 89999999999999986554 89999999999999999999999
Q ss_pred EEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccc
Q 038537 148 VFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC 227 (358)
Q Consensus 148 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 227 (358)
-++.+.|+.+++||+..++....... ....+.+.|+| .|.+++.+..+ .|-+|.+.... ...... .+
T Consensus 142 ALsVg~D~~lr~WNLV~Gr~a~v~~L-----~~~at~v~w~~--~Gd~F~v~~~~-~i~i~q~d~A~----v~~~i~-~~ 208 (362)
T KOG0294|consen 142 ALSVGGDQVLRTWNLVRGRVAFVLNL-----KNKATLVSWSP--QGDHFVVSGRN-KIDIYQLDNAS----VFREIE-NP 208 (362)
T ss_pred EEEEcCCceeeeehhhcCccceeecc-----CCcceeeEEcC--CCCEEEEEecc-EEEEEecccHh----Hhhhhh-cc
Confidence 99999999999999988776554443 23334489998 89989888776 58999888722 211121 22
Q ss_pred ceeEEEee-eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 228 FAVLCLVA-IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 228 ~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
..+.|+.+ ++..|++|+.|+.|.+||..+. .+...+.+|..+|-++.+-.+.. +.+|+|+|.||.|+|||+
T Consensus 209 ~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~----~~~~~~~AH~~RVK~i~~~~~~~----~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 209 KRILCATFLDGSELLVGGDNEWISLKDTDSD----TPLTEFLAHENRVKDIASYTNPE----HEYLVTASSDGFIKVWDI 280 (362)
T ss_pred ccceeeeecCCceEEEecCCceEEEeccCCC----ccceeeecchhheeeeEEEecCC----ceEEEEeccCceEEEEEc
Confidence 45566665 5789999999999999999986 67888999999999998665433 789999999999999999
Q ss_pred eeC
Q 038537 307 KVM 309 (358)
Q Consensus 307 ~~~ 309 (358)
+..
T Consensus 281 ~~~ 283 (362)
T KOG0294|consen 281 DME 283 (362)
T ss_pred ccc
Confidence 876
No 47
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.7e-33 Score=261.02 Aligned_cols=270 Identities=14% Similarity=0.177 Sum_probs=208.2
Q ss_pred CEEeeeCCCcEEEEeCCCc----e----eeeeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPDC----V----ERGFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTT 69 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~----~----~~~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 69 (358)
+||+|+.||.|+||+.... . ....+. +...+.++.++ +.+|++++.||+|++||+.+++.+.
T Consensus 497 ~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~------ 569 (793)
T PLN00181 497 FFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVT------ 569 (793)
T ss_pred EEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEE------
Confidence 4899999999999997532 1 112222 34577788774 6799999999999999998765432
Q ss_pred cCCCceeeeecCCCccccCCCceEEEEEeC-CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEc-CCCCE
Q 038537 70 LPRRSSFLSFSKSNTQQQHRDCVSCMAFYH-AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVN-QDDGF 147 (358)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ 147 (358)
.+.+|.+.|++++|+| ++.+|++|+.||.|++||+.++. .+..+.. ...+.++.|+ +++.+
T Consensus 570 --------------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--~~~~~~~-~~~v~~v~~~~~~g~~ 632 (793)
T PLN00181 570 --------------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--SIGTIKT-KANICCVQFPSESGRS 632 (793)
T ss_pred --------------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--EEEEEec-CCCeEEEEEeCCCCCE
Confidence 3368999999999997 78899999999999999998876 5555554 4679999995 47899
Q ss_pred EEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcC--Cccccceeec
Q 038537 148 VFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSG--GFNHGGFLQG 225 (358)
Q Consensus 148 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~ 225 (358)
|++|+.||.|++||++.... ....+.+|...|.++.|. ++.+|++++.|+.|++||++.... .......+.+
T Consensus 633 latgs~dg~I~iwD~~~~~~---~~~~~~~h~~~V~~v~f~---~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g 706 (793)
T PLN00181 633 LAFGSADHKVYYYDLRNPKL---PLCTMIGHSKTVSYVRFV---DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG 706 (793)
T ss_pred EEEEeCCCeEEEEECCCCCc---cceEecCCCCCEEEEEEe---CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC
Confidence 99999999999999975432 223456788999999996 578999999999999999975321 1123344666
Q ss_pred cccee--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeee-------e--eeecCcccceEEEEeecccceeeeCeEEEE
Q 038537 226 HCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHEC-------L--AVLDGHRGPVRCLAASLEMEKVVMGFLVYS 294 (358)
Q Consensus 226 ~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~--~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s 294 (358)
|...+ +++++++++|++|+.|+.|++|+.......... + .....|...|.+++|+|+ +..|++
T Consensus 707 h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~------~~~lva 780 (793)
T PLN00181 707 HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ------SSTLVA 780 (793)
T ss_pred CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC------CCeEEE
Confidence 76544 566778999999999999999998765321100 0 112345667999999999 889999
Q ss_pred ccCCCcEEEEEe
Q 038537 295 SSLDQTFKVWRV 306 (358)
Q Consensus 295 ~~~dg~v~iw~~ 306 (358)
|+.||.|+||++
T Consensus 781 ~~~dG~I~i~~~ 792 (793)
T PLN00181 781 ANSTGNIKILEM 792 (793)
T ss_pred ecCCCcEEEEec
Confidence 999999999996
No 48
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=9.1e-34 Score=245.19 Aligned_cols=277 Identities=26% Similarity=0.363 Sum_probs=215.5
Q ss_pred ccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEE
Q 038537 29 HGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYT 106 (358)
Q Consensus 29 ~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 106 (358)
...|.++.+ +++.+++++.|+.+++|+...... . ....+.+|...|.+++|+|+++++++
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~-----------------~~~~l~~h~~~v~~~~fs~d~~~l~s 220 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-N-----------------LLRELSGHTRGVSDVAFSPDGSYLLS 220 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-h-----------------hhccccccccceeeeEECCCCcEEEE
Confidence 566776654 788999999999999999965542 0 00133689999999999999999999
Q ss_pred EecCCeEEEEEccC-CcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEE
Q 038537 107 GSFDKTVKAWRVLD-KRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNAL 185 (358)
Q Consensus 107 ~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~ 185 (358)
++.|++|+|||+.. +. .+.++.+|...|++++|+|+++++++|+.|++|++||+++ .+....+.+|...|.++
T Consensus 221 ~s~D~tiriwd~~~~~~--~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~----~~~~~~l~~hs~~is~~ 294 (456)
T KOG0266|consen 221 GSDDKTLRIWDLKDDGR--NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT----GECVRKLKGHSDGISGL 294 (456)
T ss_pred ecCCceEEEeeccCCCe--EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC----CeEEEeeeccCCceEEE
Confidence 99999999999943 34 7888999999999999999999999999999999999965 45667788899999999
Q ss_pred EEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecc----cceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceee
Q 038537 186 ALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGH----CFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYH 261 (358)
Q Consensus 186 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 261 (358)
+|.+ ++.+|++++.|+.|++||+.++... ....+.++ .....++++++.++++++.|+.+++||+..+
T Consensus 295 ~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---- 366 (456)
T KOG0266|consen 295 AFSP--DGNLLVSASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---- 366 (456)
T ss_pred EECC--CCCEEEEcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC----
Confidence 9998 9999999999999999999985521 11112222 3455777889999999999999999999988
Q ss_pred eeeeeecCcccceE---EEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCCccceeeecccCC
Q 038537 262 ECLAVLDGHRGPVR---CLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNSKTTTTKMDYEM 338 (358)
Q Consensus 262 ~~~~~~~~h~~~v~---~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (358)
.....+.+|...+. +...++. +.++++|+.|+.|.+|++.+ ...+..+.+|..............
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~sg~~d~~v~~~~~~s------~~~~~~l~~h~~~~~~~~~~~~~~ 434 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTG------GKLIYSGSEDGSVYVWDSSS------GGILQRLEGHSKAAVSDLSSHPTE 434 (456)
T ss_pred cceeeecccCCcceeEecccccCC------CCeEEEEeCCceEEEEeCCc------cchhhhhcCCCCCceeccccCCCc
Confidence 56777888877543 3334455 88999999999999999984 344556666642222333333334
Q ss_pred Ccccccccchh
Q 038537 339 SPVLSPSWVEK 349 (358)
Q Consensus 339 ~~v~s~~W~~~ 349 (358)
..+.+..|..+
T Consensus 435 ~~~~s~s~~~d 445 (456)
T KOG0266|consen 435 NLIASSSFEGD 445 (456)
T ss_pred CeeeecCcCCC
Confidence 44555555443
No 49
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.4e-35 Score=235.58 Aligned_cols=286 Identities=17% Similarity=0.216 Sum_probs=230.7
Q ss_pred eeeeeeeecccceEEEEe---cCCEEEEEeCCceEEEEeccc-ccccccccccccCCCceeeeecCCCccccCCCceEEE
Q 038537 20 VERGFIKARHGEVRAILA---HDNMLFTTNKDCKIRIWNFTV-SDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCM 95 (358)
Q Consensus 20 ~~~~~~~~h~~~v~~i~~---~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 95 (358)
+.+..+.+|+..|+++.+ .+.+|++++.|+.|+||++.. +.++ +++.+|..+|..+
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~l--------------------rtf~gH~k~Vrd~ 264 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCL--------------------RTFKGHRKPVRDA 264 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCccee--------------------hhhhcchhhhhhh
Confidence 345778899999999976 467999999999999999986 3443 3568999999999
Q ss_pred EEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEceecCCcceeeee
Q 038537 96 AFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD-GFVFTCSSDGSVKIWRRVYRENSHTLTMT 174 (358)
Q Consensus 96 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 174 (358)
+|+++|..+++++.|+.|++||+++++ ++..+. ....++|+.|+|++ +.+++|+.|+.|+.||+++++ +...
T Consensus 265 ~~s~~g~~fLS~sfD~~lKlwDtETG~--~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k----vvqe 337 (503)
T KOG0282|consen 265 SFNNCGTSFLSASFDRFLKLWDTETGQ--VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK----VVQE 337 (503)
T ss_pred hccccCCeeeeeecceeeeeeccccce--EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH----HHHH
Confidence 999999999999999999999999998 666554 35678999999988 899999999999999998776 4555
Q ss_pred ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEc
Q 038537 175 LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRR 254 (358)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 254 (358)
+..|-+.|..+.|.+ ++..+++.+.|++++||+.+.+.. .+.......|..+.+.++|+++++++-+.|+.|.+|.+
T Consensus 338 Yd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~-ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~ 414 (503)
T KOG0282|consen 338 YDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVP-IKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFST 414 (503)
T ss_pred HHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCcc-chhhcchhhccCcceecCCCCCeehhhccCceEEEEec
Confidence 666889999999998 999999999999999999987433 33444466788889999999999999999999999987
Q ss_pred CCCceeeeeeeeecCcc--cceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCCccceee
Q 038537 255 AEGGCYHECLAVLDGHR--GPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNSKTTTT 332 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~h~--~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (358)
...-. ......+.+|. +--..+.|||| |.+|++|+.||.+.+||.++ ...+..+..|........
T Consensus 415 ~~~~r-~nkkK~feGh~vaGys~~v~fSpD------G~~l~SGdsdG~v~~wdwkt------~kl~~~lkah~~~ci~v~ 481 (503)
T KOG0282|consen 415 VPPFR-LNKKKRFEGHSVAGYSCQVDFSPD------GRTLCSGDSDGKVNFWDWKT------TKLVSKLKAHDQPCIGVD 481 (503)
T ss_pred ccccc-cCHhhhhcceeccCceeeEEEcCC------CCeEEeecCCccEEEeechh------hhhhhccccCCcceEEEE
Confidence 65421 12345667775 34567899999 89999999999999999984 445566666654444444
Q ss_pred ecccCCCcccccccch
Q 038537 333 KMDYEMSPVLSPSWVE 348 (358)
Q Consensus 333 ~~~~~~~~v~s~~W~~ 348 (358)
...-..+-|.+.+|.+
T Consensus 482 wHP~e~Skvat~~w~G 497 (503)
T KOG0282|consen 482 WHPVEPSKVATCGWDG 497 (503)
T ss_pred ecCCCcceeEecccCc
Confidence 4444445666777754
No 50
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=5.4e-34 Score=222.16 Aligned_cols=273 Identities=23% Similarity=0.311 Sum_probs=212.4
Q ss_pred ecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCC---CE
Q 038537 27 ARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAE---GL 103 (358)
Q Consensus 27 ~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~ 103 (358)
.|...|.++...++.+++|+.||.+++||....... ++.+|.++|..++|.-.. ..
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~~---------------------~~~Ght~~ik~v~~v~~n~~~~~ 161 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSIK---------------------TIVGHTGPIKSVAWVIKNSSSCL 161 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecCCceEE---------------------EEecCCcceeeeEEEecCCccce
Confidence 367778777777899999999999999998755432 447999999988886433 36
Q ss_pred EEEEecCCeEEEEEccCCccc--ccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecC---------------
Q 038537 104 LYTGSFDKTVKAWRVLDKRCT--CVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRE--------------- 166 (358)
Q Consensus 104 l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--------------- 166 (358)
+++++.|.++++|.++.++.. .+....+|...|.++...+++..+++|+.|..|.+|+..+..
T Consensus 162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~ 241 (423)
T KOG0313|consen 162 FVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQ 241 (423)
T ss_pred EEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhh
Confidence 999999999999998876532 233345999999999999999999999999999999932211
Q ss_pred ------CcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEE
Q 038537 167 ------NSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLI 240 (358)
Q Consensus 167 ------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (358)
....+...+.+|..+|.++.|++ ...+++++.|.+|+.||+.++...... ..+.........+..++|
T Consensus 242 ~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~---~~~ksl~~i~~~~~~~Ll 315 (423)
T KOG0313|consen 242 KREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTL---TTNKSLNCISYSPLSKLL 315 (423)
T ss_pred hhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeee---ecCcceeEeeccccccee
Confidence 11234556789999999999984 778999999999999999985433332 222333344556678999
Q ss_pred EEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeeccc
Q 038537 241 FSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDY 320 (358)
Q Consensus 241 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~ 320 (358)
++|+.|..|++||.+++.. .-....+.+|.+.|.++.|+|.+ ..+|++|+.|+++++||++.... .+..
T Consensus 316 ~~gssdr~irl~DPR~~~g-s~v~~s~~gH~nwVssvkwsp~~-----~~~~~S~S~D~t~klWDvRS~k~-----plyd 384 (423)
T KOG0313|consen 316 ASGSSDRHIRLWDPRTGDG-SVVSQSLIGHKNWVSSVKWSPTN-----EFQLVSGSYDNTVKLWDVRSTKA-----PLYD 384 (423)
T ss_pred eecCCCCceeecCCCCCCC-ceeEEeeecchhhhhheecCCCC-----ceEEEEEecCCeEEEEEeccCCC-----ccee
Confidence 9999999999999998743 23567788999999999999985 47899999999999999996322 2333
Q ss_pred ccCCCCccceeeecccCCCcccccccchhh
Q 038537 321 SDYHSNSKTTTTKMDYEMSPVLSPSWVEKK 350 (358)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~v~s~~W~~~~ 350 (358)
+.+| ...|++++|++..
T Consensus 385 I~~h-------------~DKvl~vdW~~~~ 401 (423)
T KOG0313|consen 385 IAGH-------------NDKVLSVDWNEGG 401 (423)
T ss_pred eccC-------------CceEEEEeccCCc
Confidence 3443 5568888888763
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=212.70 Aligned_cols=263 Identities=21% Similarity=0.284 Sum_probs=217.5
Q ss_pred eeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEe
Q 038537 21 ERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFY 98 (358)
Q Consensus 21 ~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 98 (358)
++..+.+|.+.|..+.| +|..|++|+.|..|.+|++.....-. -.+.+|.+.|..+.|.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-------------------~~lkgHsgAVM~l~~~ 99 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-------------------WVLKGHSGAVMELHGM 99 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-------------------eeeccccceeEeeeec
Confidence 34567899999998877 57899999999999999976543211 1347999999999999
Q ss_pred CCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEceecCCcceeeeeecc
Q 038537 99 HAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD-GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKF 177 (358)
Q Consensus 99 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 177 (358)
++++.|++++.|.+|+.||+++++ .+..++.|..-|+++.-..-| .++.+++.||++++||++..+....+.
T Consensus 100 ~d~s~i~S~gtDk~v~~wD~~tG~--~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~----- 172 (338)
T KOG0265|consen 100 RDGSHILSCGTDKTVRGWDAETGK--RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE----- 172 (338)
T ss_pred cCCCEEEEecCCceEEEEecccce--eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-----
Confidence 999999999999999999999999 889999999999999854433 467788899999999998776554443
Q ss_pred cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eeeCCEEEEeeCCCeEEEEEcC
Q 038537 178 QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAIEKLIFSGSEDTTIRVWRRA 255 (358)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~ 255 (358)
....++++.|.. .+..+.+|+-|+.|++||++.. .....+.+|..+|+.+ +++|.++.+-+.|.++++||++
T Consensus 173 ~kyqltAv~f~d--~s~qv~sggIdn~ikvWd~r~~----d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 173 NKYQLTAVGFKD--TSDQVISGGIDNDIKVWDLRKN----DGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVR 246 (338)
T ss_pred cceeEEEEEecc--cccceeeccccCceeeeccccC----cceEEeecccCceeeEEeccCCCccccccccceEEEEEec
Confidence 356788999987 8899999999999999999883 3444578999888665 5789999999999999999999
Q ss_pred CCceeeeeeeeecCccc----ceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCCc
Q 038537 256 EGGCYHECLAVLDGHRG----PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNS 327 (358)
Q Consensus 256 ~~~~~~~~~~~~~~h~~----~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 327 (358)
.-....+++..+.+|.. ....++|+|+ +..+.+|+.|..+.+||.. ...++..+.+|...
T Consensus 247 p~~p~~R~v~if~g~~hnfeknlL~cswsp~------~~~i~ags~dr~vyvwd~~------~r~~lyklpGh~gs 310 (338)
T KOG0265|consen 247 PFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN------GTKITAGSADRFVYVWDTT------SRRILYKLPGHYGS 310 (338)
T ss_pred ccCCCCceEEEeecchhhhhhhcceeeccCC------CCccccccccceEEEeecc------cccEEEEcCCccee
Confidence 76555567888887643 4567899999 8899999999999999987 44567778888765
No 52
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-33 Score=208.73 Aligned_cols=263 Identities=20% Similarity=0.292 Sum_probs=214.1
Q ss_pred CCCcEEEEeCCCceeeeeee--ecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecC
Q 038537 7 SSTRIRVWRQPDCVERGFIK--ARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSK 81 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~--~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
..|.+.|.++...+-+..+. .-...+..++++ .+.+++++.||++++||+.... .+
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-------------------~P 96 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-------------------KP 96 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC-------------------cc
Confidence 35788898886544444433 235667788874 5799999999999999954221 12
Q ss_pred CCccccCCCceEEEEEeC-CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEE
Q 038537 82 SNTQQQHRDCVSCMAFYH-AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKI 159 (358)
Q Consensus 82 ~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~ 159 (358)
...++.|...|.++.|++ ....+++++.|++|++|+...++ .+.++.+|...|....|+| ..+.+++++.|+.+++
T Consensus 97 i~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~l 174 (311)
T KOG0277|consen 97 IHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRL 174 (311)
T ss_pred hhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc--ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEE
Confidence 245689999999999998 45678888999999999998777 7889999999999999999 6789999999999999
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeee---
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI--- 236 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 236 (358)
||++.... . ..+..|...+.++.|+. .+.+.+++|+.|+.|+.||+++... ....+.+|...|..+.+.
T Consensus 175 wdvr~~gk---~-~~i~ah~~Eil~cdw~k-y~~~vl~Tg~vd~~vr~wDir~~r~---pl~eL~gh~~AVRkvk~Sph~ 246 (311)
T KOG0277|consen 175 WDVRSPGK---F-MSIEAHNSEILCCDWSK-YNHNVLATGGVDNLVRGWDIRNLRT---PLFELNGHGLAVRKVKFSPHH 246 (311)
T ss_pred EEecCCCc---e-eEEEeccceeEeecccc-cCCcEEEecCCCceEEEEehhhccc---cceeecCCceEEEEEecCcch
Confidence 99975532 2 22677899999999997 6889999999999999999998553 344578898888666543
Q ss_pred CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
..+|++++.|-++||||...+. ..+.+...|+.-|..+.|++.. +.++|+++.|+.++||+.
T Consensus 247 ~~lLaSasYDmT~riw~~~~~d---s~~e~~~~HtEFv~g~Dws~~~-----~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 247 ASLLASASYDMTVRIWDPERQD---SAIETVDHHTEFVCGLDWSLFD-----PGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhHhhhccccceEEecccccch---hhhhhhhccceEEecccccccc-----Cceeeecccccceeeecc
Confidence 4799999999999999998664 4566777899999999999974 479999999999999974
No 53
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.6e-32 Score=254.65 Aligned_cols=271 Identities=18% Similarity=0.186 Sum_probs=209.5
Q ss_pred CCcEEEEeCCCceeeee-----eeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 8 STRIRVWRQPDCVERGF-----IKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~-----~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
+|.+++|+..+.+.... +..|.+.|.++.| +++++++|+.|+.|+||++........ ....+ .
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~--~~~~~----~---- 526 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR--DIHYP----V---- 526 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc--ccccc----e----
Confidence 56788888876655433 3458899999988 578999999999999999764211000 00000 0
Q ss_pred CCCccccCCCceEEEEEeC-CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEE
Q 038537 81 KSNTQQQHRDCVSCMAFYH-AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVK 158 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 158 (358)
.. ..+...+.+++|++ .+.+|++++.||.|++||+.+++ .+..+.+|...|++++|+| ++.+|++|+.||.|+
T Consensus 527 --~~-~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~ 601 (793)
T PLN00181 527 --VE-LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ--LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVK 601 (793)
T ss_pred --EE-ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe--EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEE
Confidence 01 12345799999987 47899999999999999998877 6778889999999999997 788999999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee-eC
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA-IE 237 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 237 (358)
+||++++.... .+. +...+.++.|.+ +++.+|++|+.||.|++||++.... ....+.+|...+.++.+ ++
T Consensus 602 iWd~~~~~~~~----~~~-~~~~v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~---~~~~~~~h~~~V~~v~f~~~ 672 (793)
T PLN00181 602 LWSINQGVSIG----TIK-TKANICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKL---PLCTMIGHSKTVSYVRFVDS 672 (793)
T ss_pred EEECCCCcEEE----EEe-cCCCeEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCc---cceEecCCCCCEEEEEEeCC
Confidence 99997654322 222 235788999865 3789999999999999999986331 22345678888877765 57
Q ss_pred CEEEEeeCCCeEEEEEcCCCce--eeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 238 KLIFSGSEDTTIRVWRRAEGGC--YHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.+|++++.|+.|++||+..... ...++..+.+|...+..++|+|+ +.+|++|+.||.|++|+...
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~------~~~lasgs~D~~v~iw~~~~ 739 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS------DGYIATGSETNEVFVYHKAF 739 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC------CCEEEEEeCCCEEEEEECCC
Confidence 8999999999999999975311 12457788899999999999999 78999999999999999764
No 54
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=6.5e-33 Score=206.63 Aligned_cols=272 Identities=15% Similarity=0.220 Sum_probs=216.9
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
||++++.|.++.||-..+++.+.++.+|++.|+++.. +.+++++|+.|.++++||+.+++.+...
T Consensus 24 LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~------------- 90 (327)
T KOG0643|consen 24 LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW------------- 90 (327)
T ss_pred EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe-------------
Confidence 6899999999999999999999999999999999876 5779999999999999999999877543
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEec-----CCeEEEEEccCCc-----ccccccccccccCeEEEEEcCCCCEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF-----DKTVKAWRVLDKR-----CTCVDSFVAHESNVNAIVVNQDDGFV 148 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l 148 (358)
.-..+|..+.|+++|++++.... .+.|.++|++... ..+...+..+.+.++.+-|.|-++.|
T Consensus 91 --------k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 91 --------KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred --------ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 34566999999999998877644 4689999998432 12566677788999999999999999
Q ss_pred EEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccc
Q 038537 149 FTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCF 228 (358)
Q Consensus 149 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 228 (358)
++|.+||.|..||++++. ++....+.|...|+.+.+++ +..++++++.|.+-++||.++....... ....+.
T Consensus 163 i~Ghe~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~--d~T~FiT~s~Dttakl~D~~tl~v~Kty---~te~Pv 234 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSR--DRTYFITGSKDTTAKLVDVRTLEVLKTY---TTERPV 234 (327)
T ss_pred EEecCCCcEEEEEcccCc---eeeechhhhccccccccccC--CcceEEecccCccceeeeccceeeEEEe---eecccc
Confidence 999999999999998654 44455567889999999998 9999999999999999999984432222 333445
Q ss_pred eeEEEeeeCCEEEEeeCCCeEEEE--EcCCCce--------eeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 229 AVLCLVAIEKLIFSGSEDTTIRVW--RRAEGGC--------YHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 229 ~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~--------~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
+..+++|..+.++.|+.....-+= +.+.++. ..+.+...++|-++|++++|+|+ |+..+||++|
T Consensus 235 N~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPd------GksYsSGGED 308 (327)
T KOG0643|consen 235 NTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPD------GKSYSSGGED 308 (327)
T ss_pred cceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCC------CcccccCCCC
Confidence 556777876766666543322222 1222211 11456778899999999999999 8999999999
Q ss_pred CcEEEEEee
Q 038537 299 QTFKVWRVK 307 (358)
Q Consensus 299 g~v~iw~~~ 307 (358)
|.||+.-..
T Consensus 309 G~VR~h~Fd 317 (327)
T KOG0643|consen 309 GYVRLHHFD 317 (327)
T ss_pred ceEEEEEec
Confidence 999998665
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-33 Score=240.47 Aligned_cols=248 Identities=19% Similarity=0.358 Sum_probs=211.3
Q ss_pred eecccceEEEEecCC--EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCE
Q 038537 26 KARHGEVRAILAHDN--MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGL 103 (358)
Q Consensus 26 ~~h~~~v~~i~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 103 (358)
...+..|..++|++. .++++-..|.|.+||.+-+.++. .+..|.++|..++|+|.+.+
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--------------------rFdeHdGpVRgv~FH~~qpl 65 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--------------------RFDEHDGPVRGVDFHPTQPL 65 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh--------------------hhhccCCccceeeecCCCCe
Confidence 344567788888764 89999999999999998766654 34689999999999999999
Q ss_pred EEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCcee
Q 038537 104 LYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVN 183 (358)
Q Consensus 104 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~ 183 (358)
+++|++|-.|++|+..+.+ ++.++.+|-+.|..+.|++.-..|++++.|.+|+||+..+ ......+.+|...|.
T Consensus 66 FVSGGDDykIkVWnYk~rr--clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs----r~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 66 FVSGGDDYKIKVWNYKTRR--CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS----RKCIAVLTGHNHYVM 139 (1202)
T ss_pred EEecCCccEEEEEecccce--ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC----CceEEEEecCceEEE
Confidence 9999999999999999998 8999999999999999999999999999999999999954 445677889999999
Q ss_pred EEEEeecCCCcEEEEeecCCcEEEEEccCCcCC-------------------------ccccceeecccceeEEEeeeC-
Q 038537 184 ALALSSFFDNYFLYSGSSDGSINFWEKDKMSGG-------------------------FNHGGFLQGHCFAVLCLVAIE- 237 (358)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~- 237 (358)
|..|+| ...+++++|.|.+|++||+...... ......+.||...|...++.+
T Consensus 140 cAqFhp--tEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 140 CAQFHP--TEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT 217 (1202)
T ss_pred eeccCC--ccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence 999999 8889999999999999998652111 111234567777776555554
Q ss_pred -CEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 238 -KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 238 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
.+|++|+.|..|++|.+...+. -.+.+..+|.++|.++-|+|. ..+++|.|+|++|+|||+...
T Consensus 218 lpliVSG~DDRqVKlWrmnetKa--WEvDtcrgH~nnVssvlfhp~------q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNETKA--WEVDTCRGHYNNVSSVLFHPH------QDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cceEEecCCcceeeEEEeccccc--eeehhhhcccCCcceEEecCc------cceeEecCCCccEEEEecccc
Confidence 8999999999999999987643 347788999999999999998 679999999999999999854
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-33 Score=206.22 Aligned_cols=262 Identities=20% Similarity=0.265 Sum_probs=208.7
Q ss_pred CCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC-CCEEEEEecCCeEEEEEccCCcccc
Q 038537 47 KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA-EGLLYTGSFDKTVKAWRVLDKRCTC 125 (358)
Q Consensus 47 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~ 125 (358)
..|++.|-++...+.+..... ..-.+.+..++|+++ .+.+++++.||++++||+.... .+
T Consensus 36 G~G~L~ile~~~~~gi~e~~s------------------~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-~P 96 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQS------------------YDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-KP 96 (311)
T ss_pred cCceEEEEecCCCCCeEEEEe------------------eecccceeEeeecCCCcceEEEEecCceEEEeccCCCC-cc
Confidence 478899999874443332211 234567899999985 4688899999999999965443 48
Q ss_pred cccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCc
Q 038537 126 VDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGS 204 (358)
Q Consensus 126 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~ 204 (358)
+..++.|...|.++.|++ ++..+++++.|++|++|+.. ...-..++.+|+..|...+|+| ..++++++++.|+.
T Consensus 97 i~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~----r~~Sv~Tf~gh~~~Iy~a~~sp-~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 97 IHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPN----RPNSVQTFNGHNSCIYQAAFSP-HIPNLFASASGDGT 171 (311)
T ss_pred hhHHHhhhhheEEeccccccceeEEeeccCCceEeecCC----CCcceEeecCCccEEEEEecCC-CCCCeEEEccCCce
Confidence 899999999999999998 56678888999999999984 3344566888999999999999 57899999999999
Q ss_pred EEEEEccCCcCCccccceeecccceeEEEee---eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeec
Q 038537 205 INFWEKDKMSGGFNHGGFLQGHCFAVLCLVA---IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASL 281 (358)
Q Consensus 205 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 281 (358)
+++||++... + ...+..|...++|+.+ +.+.++||+.|+.|+.||++.-+ .++.++.+|.-.|+.+.|+|
T Consensus 172 l~lwdvr~~g---k-~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 172 LRLWDVRSPG---K-FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---TPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred EEEEEecCCC---c-eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---ccceeecCCceEEEEEecCc
Confidence 9999998742 1 2227788888888876 46899999999999999999875 67899999999999999999
Q ss_pred ccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCCccceeeecccCCCcccccccchh
Q 038537 282 EMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNSKTTTTKMDYEMSPVLSPSWVEK 349 (358)
Q Consensus 282 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~W~~~ 349 (358)
.. ..+|+|++.|-++||||... ...++...+.|..-........+....+.+..|.+.
T Consensus 245 h~-----~~lLaSasYDmT~riw~~~~-----~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~ 302 (311)
T KOG0277|consen 245 HH-----ASLLASASYDMTVRIWDPER-----QDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDEL 302 (311)
T ss_pred ch-----hhHhhhccccceEEeccccc-----chhhhhhhhccceEEeccccccccCceeeecccccc
Confidence 85 47999999999999999874 334455556666555555555556667777777664
No 57
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-33 Score=217.42 Aligned_cols=262 Identities=17% Similarity=0.285 Sum_probs=213.1
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSK 81 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
+|+|+.||.|+|||+.+..+...+.+|.+.|..|..+.+.+++++.|.+|+.|.++.. ...
T Consensus 82 ~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~-p~~------------------ 142 (433)
T KOG0268|consen 82 VASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP-PLH------------------ 142 (433)
T ss_pred hhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccCC-cce------------------
Confidence 6899999999999999999999999999999999999899999999999999998863 111
Q ss_pred CCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC-CCEEEEEeCCCcEEEE
Q 038537 82 SNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD-DGFVFTCSSDGSVKIW 160 (358)
Q Consensus 82 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~w 160 (358)
+ ..-...+..+.-+..+..++|++. .|.|||..... ++..+.-....|.++.|+|. ...|++|..|+.|.+|
T Consensus 143 --t-ilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~--Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLy 215 (433)
T KOG0268|consen 143 --T-ILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDN--PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLY 215 (433)
T ss_pred --e-eeccccccccccccccccccccCc--eeeecccccCC--ccceeecCCCceeEEecCCCcchheeeeccCCceEEE
Confidence 1 112334666776667778898886 49999998777 78888777788999999995 4567777799999999
Q ss_pred EceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eeeCC
Q 038537 161 RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAIEK 238 (358)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 238 (358)
|+++.....+... ...-+.++|+| +...|++|++|..++.||++....+ .....+|...++.+ +|.|+
T Consensus 216 D~R~~~Pl~KVi~-----~mRTN~IswnP--eafnF~~a~ED~nlY~~DmR~l~~p---~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 216 DLRQASPLKKVIL-----TMRTNTICWNP--EAFNFVAANEDHNLYTYDMRNLSRP---LNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred ecccCCccceeee-----eccccceecCc--cccceeeccccccceehhhhhhccc---chhhcccceeEEEeccCCCcc
Confidence 9998887776665 34557899999 8889999999999999999985543 33477888888665 56789
Q ss_pred EEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 239 LIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 239 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
-+++|+.|.+|+||..+.+.. +.+.- ..--..|.++.|+.| .+++++||+|+.|++|.-..
T Consensus 286 EfvsgsyDksIRIf~~~~~~S--RdiYh-tkRMq~V~~Vk~S~D------skyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 286 EFVSGSYDKSIRIFPVNHGHS--RDIYH-TKRMQHVFCVKYSMD------SKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred hhccccccceEEEeecCCCcc--hhhhh-HhhhheeeEEEEecc------ccEEEecCCCcceeeeecch
Confidence 999999999999999988732 11110 112347999999999 88999999999999998764
No 58
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-32 Score=234.74 Aligned_cols=265 Identities=20% Similarity=0.317 Sum_probs=198.5
Q ss_pred eeee-ecccceEEEEe--cCCEEEEEeCCceEEEEeccccccccc-----------------------cc----------
Q 038537 23 GFIK-ARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRT-----------------------KK---------- 66 (358)
Q Consensus 23 ~~~~-~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~-----------------------~~---------- 66 (358)
+.+. +|.+.|+++.| +|+|||+||.||.|+||.+...+.... ..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4455 89999999977 799999999999999999876111000 00
Q ss_pred -------ccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEE
Q 038537 67 -------VTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI 139 (358)
Q Consensus 67 -------~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 139 (358)
...++.....+.-.+...+.||.+.|..+.|+.+ ++|++++.|.+|++|++...+ ++..| .|..-|+|+
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~--CL~~F-~HndfVTcV 415 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE--CLKVF-SHNDFVTCV 415 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc--eeeEE-ecCCeeEEE
Confidence 0011111122233444678899999999999965 589999999999999999877 77776 599999999
Q ss_pred EEcC-CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcc
Q 038537 140 VVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFN 218 (358)
Q Consensus 140 ~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 218 (358)
+|+| |.++|++|+-||.|+||++...+ . ........-|++++|.| +|+..++|+.+|.+++|+....+....
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~----V-v~W~Dl~~lITAvcy~P--dGk~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKK----V-VDWNDLRDLITAVCYSP--DGKGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCe----e-EeehhhhhhheeEEecc--CCceEEEEEeccEEEEEEccCCeEEEe
Confidence 9999 88999999999999999984332 2 22333458899999999 899999999999999999887432111
Q ss_pred ccc-----eeecccceeEEEee---eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCccc--ceEEEEeecccceeee
Q 038537 219 HGG-----FLQGHCFAVLCLVA---IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRG--PVRCLAASLEMEKVVM 288 (358)
Q Consensus 219 ~~~-----~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~--~v~~i~~~~~~~~~~~ 288 (358)
..- ....+. .|+.+.+ +...+++.+.|..|||||.+.. .++..++|+.. .-...+|+.+
T Consensus 489 ~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~----~lv~KfKG~~n~~SQ~~Asfs~D------ 557 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK----DLVHKFKGFRNTSSQISASFSSD------ 557 (712)
T ss_pred eeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch----hhhhhhcccccCCcceeeeEccC------
Confidence 100 011122 6766654 3456777789999999999877 56777776543 3345678888
Q ss_pred CeEEEEccCCCcEEEEEeeeC
Q 038537 289 GFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 289 ~~~l~s~~~dg~v~iw~~~~~ 309 (358)
|++|+++++|..|++|++...
T Consensus 558 gk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 558 GKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred CCEEEEeecCceEEEEeCCCC
Confidence 899999999999999998643
No 59
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=6.8e-32 Score=214.01 Aligned_cols=270 Identities=17% Similarity=0.238 Sum_probs=221.9
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecC--CEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHD--NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
++||+.|..+.++|...++.+..++||...|+.+.+++ ..+++++.|..|+||.........
T Consensus 234 ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~---------------- 297 (506)
T KOG0289|consen 234 ILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT---------------- 297 (506)
T ss_pred ceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc----------------
Confidence 68999999999999999999999999999999998864 578999999999999987654321
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
....|..+|+.+..+|.|.+|++++.||+..+.|++++.......-....-.+++.+|+|||..|.+|..||.|++
T Consensus 298 ----~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 298 ----SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred ----ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 3368999999999999999999999999999999999883222222222346899999999999999999999999
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCE
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKL 239 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (358)
||+..+. ....+.+|.++|..++|+. +|.+|++++.|+.|++||+|+......+.. ........++|...|.+
T Consensus 374 wdlks~~----~~a~Fpght~~vk~i~FsE--NGY~Lat~add~~V~lwDLRKl~n~kt~~l-~~~~~v~s~~fD~SGt~ 446 (506)
T KOG0289|consen 374 WDLKSQT----NVAKFPGHTGPVKAISFSE--NGYWLATAADDGSVKLWDLRKLKNFKTIQL-DEKKEVNSLSFDQSGTY 446 (506)
T ss_pred EEcCCcc----ccccCCCCCCceeEEEecc--CceEEEEEecCCeEEEEEehhhcccceeec-cccccceeEEEcCCCCe
Confidence 9996554 3456677999999999998 999999999999999999998553222211 11223445666777999
Q ss_pred EEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 240 IFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 240 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
|+.++.|=+|++++-.+.+ +..+..+..|.+..+++.|... .++++++|.|..++++.+
T Consensus 447 L~~~g~~l~Vy~~~k~~k~--W~~~~~~~~~sg~st~v~Fg~~------aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 447 LGIAGSDLQVYICKKKTKS--WTEIKELADHSGLSTGVRFGEH------AQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEeecceeEEEEEeccccc--ceeeehhhhcccccceeeeccc------ceEEeeccchhheEEeec
Confidence 9999888777777755554 4778888889999999999998 789999999999988764
No 60
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.5e-32 Score=227.04 Aligned_cols=264 Identities=22% Similarity=0.326 Sum_probs=219.3
Q ss_pred eeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCc
Q 038537 5 GSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNT 84 (358)
Q Consensus 5 g~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
.+..++|++|+..+.++++++...-.-..++.+.++++++|...|.+.++|+.+...+. +
T Consensus 390 Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E--------------------t 449 (888)
T KOG0306|consen 390 SGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE--------------------T 449 (888)
T ss_pred ecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh--------------------h
Confidence 33457899999999999999876522223344567899999999999999998776654 3
Q ss_pred cccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCC-----cccccccc-----cccccCeEEEEEcCCCCEEEEEeCC
Q 038537 85 QQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDK-----RCTCVDSF-----VAHESNVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 85 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d 154 (358)
..+|.+.|+.++.+|++..+++|+.|.+|++||..-- .......+ -.-+..|.|+.++||+++|+++--|
T Consensus 450 i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLd 529 (888)
T KOG0306|consen 450 IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLD 529 (888)
T ss_pred hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEecc
Confidence 3689999999999999999999999999999997421 10011111 1245789999999999999999999
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV 234 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
.++++|-+ ...++...+.+|.-+|.|+.++| +++++++|+.|.+|++|-+.-+.. ...+.+|...+.++.
T Consensus 530 nTVkVyfl----DtlKFflsLYGHkLPV~smDIS~--DSklivTgSADKnVKiWGLdFGDC----HKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 530 NTVKVYFL----DTLKFFLSLYGHKLPVLSMDISP--DSKLIVTGSADKNVKIWGLDFGDC----HKSFFAHDDSVMSVQ 599 (888)
T ss_pred CeEEEEEe----cceeeeeeecccccceeEEeccC--CcCeEEeccCCCceEEeccccchh----hhhhhcccCceeEEE
Confidence 99999988 55567788899999999999999 999999999999999998887443 333667877776654
Q ss_pred --eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 235 --AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 235 --~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
|....+++++.|+.|+-||-..- +.+..+.+|...|++++.+|+ |.+++|+|.|.+|++|....
T Consensus 600 F~P~~~~FFt~gKD~kvKqWDg~kF----e~iq~L~~H~~ev~cLav~~~------G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 600 FLPKTHLFFTCGKDGKVKQWDGEKF----EEIQKLDGHHSEVWCLAVSPN------GSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EcccceeEEEecCcceEEeechhhh----hhheeeccchheeeeeEEcCC------CCeEEeccCCceeEeeeccC
Confidence 56789999999999999998875 779999999999999999999 89999999999999998764
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-31 Score=221.72 Aligned_cols=264 Identities=21% Similarity=0.297 Sum_probs=214.0
Q ss_pred eeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCC
Q 038537 5 GSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82 (358)
Q Consensus 5 g~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
.+....|++|+..++........+...|+++.+ +|.+|++|..+|.|.|||..+.+.++..
T Consensus 193 Valg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~----------------- 255 (484)
T KOG0305|consen 193 VALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL----------------- 255 (484)
T ss_pred EEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc-----------------
Confidence 344457999999999877776667899999987 5899999999999999999877665432
Q ss_pred Ccccc-CCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038537 83 NTQQQ-HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWR 161 (358)
Q Consensus 83 ~~~~~-h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 161 (358)
.+ |...|-+++|. +..+.+|+.|+.|..+|++..+.. ...+.+|...|..+.|++++.++++|+.|+.+.|||
T Consensus 256 ---~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~-~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd 329 (484)
T KOG0305|consen 256 ---RGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV-VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD 329 (484)
T ss_pred ---cCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh-hhhhhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence 34 99999999996 678999999999999999987732 225889999999999999999999999999999999
Q ss_pred ceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec--CCcEEEEEccCCcCCccccceeecccceeEEEeeeCCE
Q 038537 162 RVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS--DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKL 239 (358)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (358)
.. ...+...+..|...|.+++|+| ....+||+|+. |+.|++||..++...... ..+....-+.+++..+-
T Consensus 330 ~~----~~~p~~~~~~H~aAVKA~awcP-~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v---dtgsQVcsL~Wsk~~kE 401 (484)
T KOG0305|consen 330 GL----SPEPKFTFTEHTAAVKALAWCP-WQSGLLATGGGSADRCIKFWNTNTGARIDSV---DTGSQVCSLIWSKKYKE 401 (484)
T ss_pred CC----CccccEEEeccceeeeEeeeCC-CccCceEEcCCCcccEEEEEEcCCCcEeccc---ccCCceeeEEEcCCCCE
Confidence 83 3344566677999999999999 46778888754 999999999874332221 22333333334444443
Q ss_pred EEE--eeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 240 IFS--GSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 240 l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
|++ |..++.|.||+..+. +.+..+.+|...|..++++|+ |..+++|+.|.++++|++-..
T Consensus 402 i~sthG~s~n~i~lw~~ps~----~~~~~l~gH~~RVl~la~SPd------g~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 402 LLSTHGYSENQITLWKYPSM----KLVAELLGHTSRVLYLALSPD------GETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEecCCCCCcEEEEecccc----ceeeeecCCcceeEEEEECCC------CCEEEEecccCcEEeccccCC
Confidence 544 447788999999986 678899999999999999999 899999999999999999764
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.6e-31 Score=216.90 Aligned_cols=244 Identities=29% Similarity=0.487 Sum_probs=201.5
Q ss_pred eeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC
Q 038537 23 GFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA 100 (358)
Q Consensus 23 ~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 100 (358)
..+.+|..+|.++.++ ++++++++.||.|++|++.+.+... .+..|...+..+.|+|+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~--------------------~~~~~~~~i~~~~~~~~ 62 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--------------------TLKGHTGPVRDVAASAD 62 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE--------------------EEecCCcceeEEEECCC
Confidence 4567899999999885 5899999999999999998765321 23578888999999999
Q ss_pred CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCC
Q 038537 101 EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQS 180 (358)
Q Consensus 101 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 180 (358)
++.+++++.||.|++|++.+++ ....+..|...+.++.|++++.++++++.+|.|++||+++.+ ....+..|..
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~ 136 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGE--CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK----CLTTLRGHTD 136 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCccc--ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE----EEEEeccCCC
Confidence 9999999999999999998876 566777888899999999998888888889999999996433 3344456788
Q ss_pred ceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEE--EeeeCCEEEEeeCCCeEEEEEcCCCc
Q 038537 181 SVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 181 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~ 258 (358)
.+.+++++| ++.++++++.|+.|++||++... ....+..|...+.+ ++++++.+++++.|+.|++||+..+
T Consensus 137 ~i~~~~~~~--~~~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~- 209 (289)
T cd00200 137 WVNSVAFSP--DGTFVASSSQDGTIKLWDLRTGK----CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG- 209 (289)
T ss_pred cEEEEEEcC--cCCEEEEEcCCCcEEEEEccccc----cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC-
Confidence 999999998 78888888889999999998633 23334455555544 4566778999999999999999987
Q ss_pred eeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 259 CYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 259 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+.+..+..|...+.++.|+|+ +.++++++.||.|++|++..
T Consensus 210 ---~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 210 ---KCLGTLRGHENGVNSVAFSPD------GYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred ---ceecchhhcCCceEEEEEcCC------CcEEEEEcCCCcEEEEEcCC
Confidence 556777789999999999998 77999998899999999974
No 63
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-32 Score=207.24 Aligned_cols=294 Identities=17% Similarity=0.258 Sum_probs=233.9
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccc----ccccccc------cc
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVS----DNFRTKK------VT 68 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~----~~~~~~~------~~ 68 (358)
++.+++.|.+-+||.+++++++..+.+|.+.|+++.|+ +.++++++.|++..||...-. +...... ..
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 46789999999999999999999999999999999885 568999999999999973211 1000000 00
Q ss_pred ----ccCCC------ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEE
Q 038537 69 ----TLPRR------SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNA 138 (358)
Q Consensus 69 ----~~~~~------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 138 (358)
..+.. .......+...+.+|...|.+..|...|+.+++++.|.+..+||+++++ .+..+.+|....+.
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge--~v~~LtGHd~ELtH 319 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE--VVNILTGHDSELTH 319 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc--eeccccCcchhccc
Confidence 00000 0001112234577999999999999999999999999999999999999 88999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcc
Q 038537 139 IVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFN 218 (358)
Q Consensus 139 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 218 (358)
++-+|..+++++++.|.+.++||++ ........+.+|...|+++.|.. +..+++|+.|.+|++||++++..+..
T Consensus 320 cstHptQrLVvTsSrDtTFRLWDFR---eaI~sV~VFQGHtdtVTS~vF~~---dd~vVSgSDDrTvKvWdLrNMRsplA 393 (481)
T KOG0300|consen 320 CSTHPTQRLVVTSSRDTTFRLWDFR---EAIQSVAVFQGHTDTVTSVVFNT---DDRVVSGSDDRTVKVWDLRNMRSPLA 393 (481)
T ss_pred cccCCcceEEEEeccCceeEeccch---hhcceeeeecccccceeEEEEec---CCceeecCCCceEEEeeeccccCcce
Confidence 9999999999999999999999997 33344567889999999999984 67899999999999999998654433
Q ss_pred ccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 219 HGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
.. -......-+.++..+..|+.--.+..|++||+......+-+...-++|..-|+|++|..+.+ -.-|+++|.|
T Consensus 394 TI--RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp----~cnLftcGFD 467 (481)
T KOG0300|consen 394 TI--RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP----ACNLFTCGFD 467 (481)
T ss_pred ee--ecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCc----cccccccccc
Confidence 22 12233444566667788888889999999999987654445556678999999999998866 5678999999
Q ss_pred CcEEEEEeee
Q 038537 299 QTFKVWRVKV 308 (358)
Q Consensus 299 g~v~iw~~~~ 308 (358)
..+.-|++..
T Consensus 468 R~v~gW~in~ 477 (481)
T KOG0300|consen 468 RMVAGWKINT 477 (481)
T ss_pred ceeeeeEecc
Confidence 9999999975
No 64
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=3.8e-33 Score=219.71 Aligned_cols=262 Identities=21% Similarity=0.326 Sum_probs=213.8
Q ss_pred EEeeeCCCcEEEEeCCCce--eeeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 2 VFTGSSSTRIRVWRQPDCV--ERGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~--~~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
|++|+.|..|++|+....+ .+.++.+..++|+++.++ +.++++++.|+.+++|+++..+..
T Consensus 190 latgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~--------------- 254 (459)
T KOG0288|consen 190 LATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLR--------------- 254 (459)
T ss_pred hhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhh---------------
Confidence 7899999999999987655 678888889999999884 779999999999999999977654
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcE
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSV 157 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 157 (358)
.++.+|.+.|+++.|......+++|+.|.+|++||+.... +..++.. .+.+..|+.+ ...+++|-.|++|
T Consensus 255 -----~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~--C~kt~l~-~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 255 -----HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAY--CSKTVLP-GSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred -----hhhcccccceeeehhhccccceeeccccchhhhhhhhhhh--eeccccc-cccccceEec--ceeeeecccccce
Confidence 3668999999999998777679999999999999998876 5555432 4556777776 5678999999999
Q ss_pred EEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCC--ccccceeecccceeEEEee
Q 038537 158 KIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGG--FNHGGFLQGHCFAVLCLVA 235 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~ 235 (358)
++||++........ .. .+.|+++..++ ++..+++++.|.++.+.|+++..-. +.-.....++...-.+|+|
T Consensus 325 RfwD~Rs~~~~~sv----~~-gg~vtSl~ls~--~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp 397 (459)
T KOG0288|consen 325 RFWDIRSADKTRSV----PL-GGRVTSLDLSM--DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP 397 (459)
T ss_pred EEEeccCCceeeEe----ec-CcceeeEeecc--CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC
Confidence 99999766543333 22 45999999998 9999999999999999999984321 2222334456666789999
Q ss_pred eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcc--cceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 236 IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHR--GPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 236 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~--~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
++.|+++|+.||.|+||++.+++. ...+.... ..|++++|+|. |..|++++.++.+.+|.
T Consensus 398 d~~YvaAGS~dgsv~iW~v~tgKl----E~~l~~s~s~~aI~s~~W~~s------G~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 398 DGSYVAAGSADGSVYIWSVFTGKL----EKVLSLSTSNAAITSLSWNPS------GSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCceeeeccCCCcEEEEEccCceE----EEEeccCCCCcceEEEEEcCC------CchhhcccCCcceEecC
Confidence 999999999999999999999954 44444333 36999999999 89999999999999993
No 65
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.9e-31 Score=207.08 Aligned_cols=261 Identities=18% Similarity=0.208 Sum_probs=207.8
Q ss_pred eeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEe
Q 038537 21 ERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFY 98 (358)
Q Consensus 21 ~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 98 (358)
.+..|..|+..|.+++. +.++++||+.|..-.+|++.++.... .+.+|.+.|+++.|+
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~--------------------eltgHKDSVt~~~Fs 115 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG--------------------ELTGHKDSVTCCSFS 115 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee--------------------EecCCCCceEEEEEc
Confidence 45678899999998866 46799999999999999999887432 447999999999999
Q ss_pred CCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeeccc
Q 038537 99 HAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQ 178 (358)
Q Consensus 99 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 178 (358)
.+|.+||||+.+|.|+||+..++. ....+...-..+.-+.|+|.+..|++|+.||.+.+|.+..+ .....+.+|
T Consensus 116 hdgtlLATGdmsG~v~v~~~stg~--~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~----~~~kv~~Gh 189 (399)
T KOG0296|consen 116 HDGTLLATGDMSGKVLVFKVSTGG--EQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----ALCKVMSGH 189 (399)
T ss_pred cCceEEEecCCCccEEEEEcccCc--eEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc----ceeeEecCC
Confidence 999999999999999999999987 44445444567888999999999999999999999998543 455677889
Q ss_pred CCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccce-----------------eecc-----------ccee
Q 038537 179 QSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF-----------------LQGH-----------CFAV 230 (358)
Q Consensus 179 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------------~~~~-----------~~~~ 230 (358)
+.++++-.|.| +|+.++++..||+|++|++.+..+....... +.+. ...+
T Consensus 190 ~~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKV 267 (399)
T KOG0296|consen 190 NSPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKV 267 (399)
T ss_pred CCCcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceE
Confidence 99999999999 8999999999999999999885432221100 0000 0000
Q ss_pred -EEEe-----------------------eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeeccccee
Q 038537 231 -LCLV-----------------------AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKV 286 (358)
Q Consensus 231 -~~~~-----------------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 286 (358)
.+.. ..-.+.|+|+.||+|.|||+.... ++....|..+|+.+.|-++
T Consensus 268 v~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~-----~R~~c~he~~V~~l~w~~t---- 338 (399)
T KOG0296|consen 268 VNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST-----LRHICEHEDGVTKLKWLNT---- 338 (399)
T ss_pred EEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch-----hheeccCCCceEEEEEcCc----
Confidence 1111 112478899999999999999863 4445578999999999984
Q ss_pred eeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCCc
Q 038537 287 VMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNS 327 (358)
Q Consensus 287 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 327 (358)
.+|++++.||.|+.||.+ +++++....+|...
T Consensus 339 ---~~l~t~c~~g~v~~wDaR------tG~l~~~y~GH~~~ 370 (399)
T KOG0296|consen 339 ---DYLLTACANGKVRQWDAR------TGQLKFTYTGHQMG 370 (399)
T ss_pred ---chheeeccCceEEeeecc------ccceEEEEecCchh
Confidence 589999999999999999 67777777777654
No 66
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.4e-30 Score=222.11 Aligned_cols=256 Identities=15% Similarity=0.205 Sum_probs=184.8
Q ss_pred EEeeeCCCcEEEEeCCCceee-------------eeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVER-------------GFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTK 65 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~-------------~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~ 65 (358)
+++++.+.....|+...+..+ ..+.+|.+.|.++.|+ +++|++|+.||+|++||+.........
T Consensus 35 ~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~ 114 (493)
T PTZ00421 35 TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNI 114 (493)
T ss_pred cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccccc
Confidence 455566666667765433221 2477899999999884 569999999999999999765321110
Q ss_pred cccccCCCceeeeecCCCccccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC
Q 038537 66 KVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD 144 (358)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (358)
..+...+.+|...|.+++|+|++ ++|++|+.|++|++||+.+++ .+..+..|...|.+++|+|+
T Consensus 115 -------------~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--~~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 115 -------------SDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--AVEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred -------------CcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--EEEEEcCCCCceEEEEEECC
Confidence 01112457899999999999975 699999999999999999887 67778889999999999999
Q ss_pred CCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCc-eeEEEEeecCCCcEEEEee----cCCcEEEEEccCCcCCccc
Q 038537 145 DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSS-VNALALSSFFDNYFLYSGS----SDGSINFWEKDKMSGGFNH 219 (358)
Q Consensus 145 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~ 219 (358)
+.+|++++.|+.|++||++++.. ...+..|... ...+.|.+ ++..+++++ .|+.|++||+++.......
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~~----v~tl~~H~~~~~~~~~w~~--~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGTI----VSSVEAHASAKSQRCLWAK--RKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCcE----EEEEecCCCCcceEEEEcC--CCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 99999999999999999976543 3344556544 34566776 666676654 4789999999874432221
Q ss_pred cceeecccceeEEEeeeCCEEEEee-CCCeEEEEEcCCCceeeeeeeee-cCcccceEEEEeecc
Q 038537 220 GGFLQGHCFAVLCLVAIEKLIFSGS-EDTTIRVWRRAEGGCYHECLAVL-DGHRGPVRCLAASLE 282 (358)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~i~~~~~ 282 (358)
.............+++++++|++++ .|+.|++||+.+++. +... ..+..++.+++|.|.
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~----~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL----TFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce----EEEeeccCCCCCcceEeccc
Confidence 1100111122244667888888887 599999999998843 3322 235567889999986
No 67
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=1.1e-30 Score=226.08 Aligned_cols=254 Identities=12% Similarity=0.196 Sum_probs=187.1
Q ss_pred eeeCCCcEEEEeCCCceeeeeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 4 TGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 4 tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
.|+.+|.|++|+......+..+.+|.+.|.++.|+ +++|++|+.||+|+|||+.+....... . ..
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~----i--------~~ 116 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE----I--------KD 116 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc----c--------cc
Confidence 46778999999988878888999999999999885 569999999999999999764321000 0 00
Q ss_pred CCCccccCCCceEEEEEeCCCCE-EEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGL-LYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
+...+.+|...|.+++|+|++.. |++++.|++|++||+++++ ....+. |...|.+++|+|+|.+|++++.|+.|++
T Consensus 117 p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrI 193 (568)
T PTZ00420 117 PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHI 193 (568)
T ss_pred ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEE
Confidence 11234789999999999998875 5789999999999999887 444443 5678999999999999999999999999
Q ss_pred EEceecCCcceeeeeecccCCceeEEE-----EeecCCCcEEEEeecCC----cEEEEEccCCcCCccccceeeccccee
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALA-----LSSFFDNYFLYSGSSDG----SINFWEKDKMSGGFNHGGFLQGHCFAV 230 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~~~~~~ 230 (358)
||++++.. ...+.+|.+.+.... +++ ++.+|++++.|+ .|+|||++........ ..+..+...+
T Consensus 194 wD~Rsg~~----i~tl~gH~g~~~s~~v~~~~fs~--d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~-~~ld~~~~~L 266 (568)
T PTZ00420 194 IDPRKQEI----ASSFHIHDGGKNTKNIWIDGLGG--DDNYILSTGFSKNNMREMKLWDLKNTTSALVT-MSIDNASAPL 266 (568)
T ss_pred EECCCCcE----EEEEecccCCceeEEEEeeeEcC--CCCEEEEEEcCCCCccEEEEEECCCCCCceEE-EEecCCccce
Confidence 99976543 344566776554333 334 788899888774 7999999964322211 1122222322
Q ss_pred EE-E-eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecc
Q 038537 231 LC-L-VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 231 ~~-~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
.. + .+++.++++|+.|+.|++|++..+.. ..+..+ .+..++.+++|.|.
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~--~~l~~~-~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGSI--RKVNEY-KSCSPFRSFGFLPK 317 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCcE--Eeeccc-ccCCCccceEEccc
Confidence 22 2 23478899999999999999987642 233333 36778999999997
No 68
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.4e-30 Score=222.10 Aligned_cols=251 Identities=14% Similarity=0.161 Sum_probs=183.7
Q ss_pred eEEEEecCCEEEEEeCCceEEEEeccccccccccc-ccccCCCceeeeecCCCccccCCCceEEEEEeC-CCCEEEEEec
Q 038537 32 VRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKK-VTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH-AEGLLYTGSF 109 (358)
Q Consensus 32 v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~ 109 (358)
+...++++..+++++.+.....|+...+..+.... ....+ .....+.+|.+.|++++|+| ++++|++|+.
T Consensus 25 ~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~--------~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~ 96 (493)
T PTZ00421 25 PSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLA--------SNPPILLGQEGPIIDVAFNPFDPQKLFTASE 96 (493)
T ss_pred cccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCC--------CCCceEeCCCCCEEEEEEcCCCCCEEEEEeC
Confidence 33445677778888888888888876543221110 00000 00123579999999999999 7889999999
Q ss_pred CCeEEEEEccCCcc-----cccccccccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEceecCCcceeeeeecccCCcee
Q 038537 110 DKTVKAWRVLDKRC-----TCVDSFVAHESNVNAIVVNQDD-GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVN 183 (358)
Q Consensus 110 dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~ 183 (358)
|++|++||+.+... .++..+.+|...|.+++|+|++ ++|++++.|+.|++||++++. ....+..|...|.
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~----~~~~l~~h~~~V~ 172 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK----AVEVIKCHSDQIT 172 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe----EEEEEcCCCCceE
Confidence 99999999976531 2456778899999999999975 699999999999999997553 3445667889999
Q ss_pred EEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccce---eEEEeeeCCEEEEee----CCCeEEEEEcCC
Q 038537 184 ALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFA---VLCLVAIEKLIFSGS----EDTTIRVWRRAE 256 (358)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~----~dg~i~iwd~~~ 256 (358)
+++|+| ++.+|++++.|+.|++||++++. ....+.+|... ...+.+++..+++++ .|+.|++||++.
T Consensus 173 sla~sp--dG~lLatgs~Dg~IrIwD~rsg~----~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~ 246 (493)
T PTZ00421 173 SLEWNL--DGSLLCTTSKDKKLNIIDPRDGT----IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK 246 (493)
T ss_pred EEEEEC--CCCEEEEecCCCEEEEEECCCCc----EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence 999998 99999999999999999999743 22334555432 234455666666554 479999999987
Q ss_pred CceeeeeeeeecCc-ccceEEEEeecccceeeeCeEEEEcc-CCCcEEEEEeeeC
Q 038537 257 GGCYHECLAVLDGH-RGPVRCLAASLEMEKVVMGFLVYSSS-LDQTFKVWRVKVM 309 (358)
Q Consensus 257 ~~~~~~~~~~~~~h-~~~v~~i~~~~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~ 309 (358)
.. .++.....+ ...+....|+++ +.+|++++ .||.|++||+.+.
T Consensus 247 ~~---~p~~~~~~d~~~~~~~~~~d~d------~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 247 MA---SPYSTVDLDQSSALFIPFFDED------TNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CC---CceeEeccCCCCceEEEEEcCC------CCEEEEEEeCCCeEEEEEeeCC
Confidence 64 233333333 345556678888 77888777 5999999999864
No 69
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-31 Score=197.34 Aligned_cols=256 Identities=21% Similarity=0.222 Sum_probs=207.2
Q ss_pred eecccceEEEE--ecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC--CC
Q 038537 26 KARHGEVRAIL--AHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH--AE 101 (358)
Q Consensus 26 ~~h~~~v~~i~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~ 101 (358)
..|...|..+. +.+.+|+|++.|++|+|+.+........ ..++.+|.++|+.++|.. -|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~l-----------------l~~L~Gh~GPVwqv~wahPk~G 70 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKL-----------------LAELTGHSGPVWKVAWAHPKFG 70 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCcee-----------------eeEecCCCCCeeEEeecccccC
Confidence 46777787664 4699999999999999999987654111 125689999999999965 78
Q ss_pred CEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC--CCEEEEEeCCCcEEEEEceecCCcceeeeeecccC
Q 038537 102 GLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD--DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ 179 (358)
Q Consensus 102 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 179 (358)
.+|++++.||.|.||.-..+++........|...|++++|.|. |-.|++++.||.|.+.+.+.. ...........|.
T Consensus 71 ~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t~ki~~aH~ 149 (299)
T KOG1332|consen 71 TILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTTSKIVFAHE 149 (299)
T ss_pred cEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccchhhhhccc
Confidence 9999999999999999999998888899999999999999984 568999999999999998765 3344455667899
Q ss_pred CceeEEEEeecCC-C-----------cEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee--e----CCEEE
Q 038537 180 SSVNALALSSFFD-N-----------YFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA--I----EKLIF 241 (358)
Q Consensus 180 ~~i~~~~~~~~~~-~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~l~ 241 (358)
-.+++++|.|..- + ..|++|+.|..|+||+.... .......+.+|..-+..+.+ . ...|+
T Consensus 150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA 227 (299)
T KOG1332|consen 150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA 227 (299)
T ss_pred cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence 9999999998411 2 56999999999999999875 45566668899988865543 2 25899
Q ss_pred EeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 242 SGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 242 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+++.||++.||........ -....+......+..++|++. |.+|+.++.|+.|.+|.-..
T Consensus 228 S~SqDg~viIwt~~~e~e~-wk~tll~~f~~~~w~vSWS~s------Gn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 228 SCSQDGTVIIWTKDEEYEP-WKKTLLEEFPDVVWRVSWSLS------GNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EecCCCcEEEEEecCccCc-ccccccccCCcceEEEEEecc------ccEEEEecCCcEEEEEEeCC
Confidence 9999999999987743221 223444456778999999999 88999999999999997653
No 70
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=4.4e-31 Score=201.11 Aligned_cols=272 Identities=18% Similarity=0.231 Sum_probs=201.3
Q ss_pred eeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccc---cccccccCCCceeeeecCCCccccCCCceEEEE
Q 038537 22 RGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFR---TKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMA 96 (358)
Q Consensus 22 ~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 96 (358)
...+..|.+++.+-.| +|.++++|+.|-.|+|.|++..-... .......... -+..+++..|.++|+++.
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~-----hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQAR-----HPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccC-----CceEeehhhccCccccee
Confidence 3456779998887765 78899999999999999987321111 0000000000 122257789999999999
Q ss_pred EeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeec
Q 038537 97 FYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLK 176 (358)
Q Consensus 97 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 176 (358)
|+|....|++|+.|++|+++|+.....+.-........+|.++.|+|.|.++++|.....+++||+.+-+...... ...
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan-Pd~ 258 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN-PDD 258 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-ccc
Confidence 9999999999999999999999765533333333456789999999999999999999999999997665433322 345
Q ss_pred ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCC
Q 038537 177 FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAE 256 (358)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 256 (358)
.|...|+++.+++ .+++.++++.||.|++||--+............+......-|..+++++++.+.|..+++|.+.+
T Consensus 259 qht~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t 336 (430)
T KOG0640|consen 259 QHTGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST 336 (430)
T ss_pred ccccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC
Confidence 6889999999998 99999999999999999976644333332222222222334556899999999999999999988
Q ss_pred Cceeeeee---------------------------------e------------eecCcccceEEEEeecccceeeeCeE
Q 038537 257 GGCYHECL---------------------------------A------------VLDGHRGPVRCLAASLEMEKVVMGFL 291 (358)
Q Consensus 257 ~~~~~~~~---------------------------------~------------~~~~h~~~v~~i~~~~~~~~~~~~~~ 291 (358)
+....+.. . ---+|.+.+..+.-+|. +.-
T Consensus 337 ~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~------~p~ 410 (430)
T KOG0640|consen 337 GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPV------EPA 410 (430)
T ss_pred CceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCC------CCc
Confidence 75421110 0 01268899999999999 568
Q ss_pred EEEccCCCcEEEEEee
Q 038537 292 VYSSSLDQTFKVWRVK 307 (358)
Q Consensus 292 l~s~~~dg~v~iw~~~ 307 (358)
+++||.|-.+|+|--+
T Consensus 411 FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 411 FMTCSDDFRARFWYRR 426 (430)
T ss_pred eeeecccceeeeeeec
Confidence 9999999999999654
No 71
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6.3e-31 Score=220.99 Aligned_cols=290 Identities=15% Similarity=0.187 Sum_probs=211.8
Q ss_pred EeeeCCCcEEEEeCCCceee---eeeeecccceEEEEe-------------cCCEEEEEeCCceEEEEeccccccccccc
Q 038537 3 FTGSSSTRIRVWRQPDCVER---GFIKARHGEVRAILA-------------HDNMLFTTNKDCKIRIWNFTVSDNFRTKK 66 (358)
Q Consensus 3 ~tg~~dg~v~vw~~~~~~~~---~~~~~h~~~v~~i~~-------------~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 66 (358)
...-.|..++|||+.+...+ ..+-.|...|+.+.. -...++|++.|++|++|++.....-....
T Consensus 340 scVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyr 419 (1080)
T KOG1408|consen 340 SCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYR 419 (1080)
T ss_pred EEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceee
Confidence 34567899999999765433 455678888887732 13479999999999999998632111100
Q ss_pred -------ccc---cCCCceeee------ec-CCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccc
Q 038537 67 -------VTT---LPRRSSFLS------FS-KSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF 129 (358)
Q Consensus 67 -------~~~---~~~~~~~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 129 (358)
+.. ......++. +. ......+..-.+.+++.+|+|++|++|..-|.+++|++...+ ....+
T Consensus 420 RNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~--~~~~~ 497 (1080)
T KOG1408|consen 420 RNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE--YTCFM 497 (1080)
T ss_pred cccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhh--hhhhe
Confidence 000 000000000 00 001122344569999999999999999999999999998877 67778
Q ss_pred cccccCeEEEEEcC---CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeec----------------
Q 038537 130 VAHESNVNAIVVNQ---DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSF---------------- 190 (358)
Q Consensus 130 ~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------- 190 (358)
..|++.|.|+.|+. ..++|++++.|..|++||+.. ...+...+.+|...|+++.|...
T Consensus 498 eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r---ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim 574 (1080)
T KOG1408|consen 498 EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR---NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM 574 (1080)
T ss_pred ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc---ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh
Confidence 89999999999985 356899999999999999752 22333344444444444444321
Q ss_pred -------------------------------CCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEeeeC
Q 038537 191 -------------------------------FDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIE 237 (358)
Q Consensus 191 -------------------------------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 237 (358)
+..+++++++.|+.|+|||+.+++....+.. ..+|.+.. +.+.|.+
T Consensus 575 Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKg-s~~~eG~lIKv~lDPSg 653 (1080)
T KOG1408|consen 575 FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKG-SRDHEGDLIKVILDPSG 653 (1080)
T ss_pred eehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecc-cccCCCceEEEEECCCc
Confidence 2677899999999999999998765544433 33444444 4557889
Q ss_pred CEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 238 KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.|+++.+.|.++.++|..++ +++..+.||...|+.+.|.+| -+.|++.+.||.|.||.+..
T Consensus 654 iY~atScsdktl~~~Df~sg----EcvA~m~GHsE~VTG~kF~nD------CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 654 IYLATSCSDKTLCFVDFVSG----ECVAQMTGHSEAVTGVKFLND------CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cEEEEeecCCceEEEEeccc----hhhhhhcCcchheeeeeeccc------chhheeecCCceEEEEECch
Confidence 99999999999999999999 789999999999999999999 78999999999999999864
No 72
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.98 E-value=8.1e-31 Score=209.13 Aligned_cols=261 Identities=19% Similarity=0.323 Sum_probs=209.7
Q ss_pred ecccceEEEEe---cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCC-C
Q 038537 27 ARHGEVRAILA---HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAE-G 102 (358)
Q Consensus 27 ~h~~~v~~i~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~ 102 (358)
.|.+.|+.+.. +...+++.+..+.|.|||............ .+.+...+.+|.+.-..++|++.. .
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~----------~~~Pdl~L~gH~~eg~glsWn~~~~g 191 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG----------ECRPDLRLKGHEKEGYGLSWNRQQEG 191 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc----------cCCCceEEEeecccccccccccccce
Confidence 46666666543 677899999999999999875443221110 223344678999988899999854 4
Q ss_pred EEEEEecCCeEEEEEccCCc-----ccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceeeeeec
Q 038537 103 LLYTGSFDKTVKAWRVLDKR-----CTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLK 176 (358)
Q Consensus 103 ~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 176 (358)
.|++|+.|++|++||+.... ..+...+.+|+..|..++|++ +..+|++++.|+.+.|||+|+. ..+......
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ 269 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVK 269 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCCccccc
Confidence 79999999999999997543 224456778999999999999 6678999999999999999873 445556678
Q ss_pred ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeee---CCEEEEeeCCCeEEEEE
Q 038537 177 FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI---EKLIFSGSEDTTIRVWR 253 (358)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd 253 (358)
+|...+.|++|+| .++..||+|+.|++|++||+|+... ....+.+|...+.++.++ ...|++++.|+.+.+||
T Consensus 270 ah~~~vn~~~fnp-~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 270 AHSAEVNCVAFNP-FNEFILATGSADKTVALWDLRNLNK---PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred ccCCceeEEEeCC-CCCceEEeccCCCcEEEeechhccc---CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 8999999999999 5789999999999999999998654 445588999999888654 47999999999999999
Q ss_pred cCCCc----------eeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 254 RAEGG----------CYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 254 ~~~~~----------~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+..-. .+.+++....||...|..+.|+|..+ ..++|+++|+.+.||++..
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~eP-----W~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEP-----WTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccccccccCCCCCC-----eEEEEecCCceEEEeeccc
Confidence 86421 12356788889999999999999975 6899999999999999873
No 73
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.8e-29 Score=191.80 Aligned_cols=269 Identities=18% Similarity=0.281 Sum_probs=209.5
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeC--CceEEEEecccccccccccccccCCCcee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNK--DCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
+|++++.|-+++|||..+++.++.+..+.-.|..+.| +.+.++.++. |.+|+..++.+.+.++.
T Consensus 28 ~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRY------------ 95 (311)
T KOG1446|consen 28 LLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRY------------ 95 (311)
T ss_pred EEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEE------------
Confidence 3678889999999999999999999888666666655 5667776665 88999999998887753
Q ss_pred eeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
+.||...|..++.+|-+..+++++.|++|++||++..+ +...+.. ..-..++|+|+|-++|++.....
T Consensus 96 --------F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~--cqg~l~~--~~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 96 --------FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK--CQGLLNL--SGRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred --------cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC--CceEEec--CCCcceeECCCCcEEEEecCCCe
Confidence 46999999999999999999999999999999999776 4333322 23345789999999999998889
Q ss_pred EEEEEceecCCcceeeeeec-ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccc-eeEEEe
Q 038537 157 VKIWRRVYRENSHTLTMTLK-FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCF-AVLCLV 234 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~ 234 (358)
|++||++.-....-....+. ......+.+.|+| +|++|+.+...+.+++.|.-++............... .-.++.
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~--dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP--DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcC--CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 99999987543332222222 4567889999999 9999999999999999998775422222111111111 236778
Q ss_pred eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecC-cccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 235 AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDG-HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 235 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
|+++++++|+.||+|.+|++.++ ..+..+.+ +.+++.++.|+|. -.+++|+ +..+.+|=..
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg----~~v~~~~~~~~~~~~~~~fnP~------~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETG----KKVAVLRGPNGGPVSCVRFNPR------YAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCC----cEeeEecCCCCCCccccccCCc------eeeeeec--CceEEEEecc
Confidence 99999999999999999999999 55666766 7899999999998 4466665 4578888655
No 74
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=2.5e-30 Score=206.56 Aligned_cols=263 Identities=20% Similarity=0.270 Sum_probs=208.9
Q ss_pred eeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC
Q 038537 22 RGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99 (358)
Q Consensus 22 ~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 99 (358)
...+..|.-+|.++.. ++.+.++++.+|+|.-|++.+++..+.................... .+|...+.+++.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~avS~ 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLAVSS 212 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccceeEEEEEcC
Confidence 4566788889988865 6779999999999999999988754222111100111111122222 48999999999999
Q ss_pred CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccC
Q 038537 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ 179 (358)
Q Consensus 100 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 179 (358)
|+++|++|+.|..|.||+.++.+ .+..+.+|.+.|.+++|-...+.+++++.|+.|++|++ ....+..++-+|+
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~e--hv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~----~~~s~vetlyGHq 286 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLE--HVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSI----DQLSYVETLYGHQ 286 (479)
T ss_pred CCcEEEecCCCceEEEecCcccc--hhhcccccccceeeeeeecCccceeeeecCCceEEEeh----hHhHHHHHHhCCc
Confidence 99999999999999999999998 88889999999999999988889999999999999998 4445566778899
Q ss_pred CceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee-eCCEEEEeeCCCeEEEEEcCCCc
Q 038537 180 SSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA-IEKLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 258 (358)
..|..+.... .+..+.+|+.|+++++|++.. .....+.++...+-|+++ +...+++|+.||.|.+|++...+
T Consensus 287 d~v~~IdaL~--reR~vtVGgrDrT~rlwKi~e-----esqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 287 DGVLGIDALS--RERCVTVGGRDRTVRLWKIPE-----ESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred cceeeechhc--ccceEEeccccceeEEEeccc-----cceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccC
Confidence 9999998886 677777788999999999954 223336677777777775 67899999999999999999875
Q ss_pred eeeeeeeeec-Cc-----------ccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 259 CYHECLAVLD-GH-----------RGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 259 ~~~~~~~~~~-~h-----------~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
+ +.+.. +| ...|++++..|. .+++++|+.+|.|++|.+...
T Consensus 360 p----lf~~~~AHgv~~~~~~~~~~~Witsla~i~~------sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 360 P----LFTSRLAHGVIPELDPVNGNFWITSLAVIPG------SDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred c----eeEeeccccccCCccccccccceeeeEeccc------CceEEecCCCCceEEEEecCC
Confidence 4 32221 11 237999999998 789999999999999999864
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=4.6e-31 Score=225.68 Aligned_cols=209 Identities=19% Similarity=0.303 Sum_probs=164.4
Q ss_pred eeeeecccceEEEEec-CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC-C
Q 038537 23 GFIKARHGEVRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH-A 100 (358)
Q Consensus 23 ~~~~~h~~~v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~ 100 (358)
+.+.+|.+.|.+++|. +++|++++.|.+|++|++...+++.. -.|.+-|+|++|+| |
T Consensus 363 ~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~---------------------F~HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKV---------------------FSHNDFVTCVAFNPVD 421 (712)
T ss_pred hhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeE---------------------EecCCeeEEEEecccC
Confidence 4567899999999996 67999999999999999998887754 46999999999999 7
Q ss_pred CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeee----c
Q 038537 101 EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTL----K 176 (358)
Q Consensus 101 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~----~ 176 (358)
.+++++|+-||.|+||++...+ +.....-..-|++++|.|+|+..++|+.+|.+++|+....+......... +
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~---Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKK---VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred CCcEeecccccceEEeecCcCe---eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 7899999999999999998887 33333345889999999999999999999999999975443222221111 1
Q ss_pred ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCC
Q 038537 177 FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAE 256 (358)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 256 (358)
.....|+.+.+.|. +...+++.+.|..|+|||.+......++......+...-..|..+|++|+++++|..|++|+...
T Consensus 499 ~~~~rITG~Q~~p~-~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 499 KQGKRITGLQFFPG-DPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ccCceeeeeEecCC-CCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 11338999999983 44567888899999999997644444444333344444567778999999999999999999744
No 76
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=3.5e-30 Score=206.12 Aligned_cols=281 Identities=19% Similarity=0.257 Sum_probs=220.8
Q ss_pred eeCC-CcEEEEeCCCceeeeeeeec-ccceEEE-EecCCEEEEEeC-CceEEEEecccccccccccccccCCCceeeeec
Q 038537 5 GSSS-TRIRVWRQPDCVERGFIKAR-HGEVRAI-LAHDNMLFTTNK-DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 5 g~~d-g~v~vw~~~~~~~~~~~~~h-~~~v~~i-~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
++.| .++.+||+.++.....+++. ...-.++ ..++.+++++.. -..|.+|.+.........
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~--------------- 77 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQY--------------- 77 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhh---------------
Confidence 3444 45999999999998888876 3333333 335677777754 457899998765543311
Q ss_pred CCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW 160 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 160 (358)
.--.++|.|++-+|+|.+|+.|+..|.|++|.+.++. .+..+.+|-..|+|+.|+.|+.+|++|+.||.|.+|
T Consensus 78 -----~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~--LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 78 -----IVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI--LLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred -----cccccceeeeecCCCceEEEeecccCcEEEEEecccc--HHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEE
Confidence 1235679999999999999999899999999999999 778888999999999999999999999999999999
Q ss_pred Eceec-----CCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee
Q 038537 161 RRVYR-----ENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA 235 (358)
Q Consensus 161 d~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (358)
.+..- .....+...+..|.-+|+.+...+.+-..++++++.|.++++||+..+..... .........+.++|
T Consensus 151 ~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlt---i~fp~si~av~lDp 227 (476)
T KOG0646|consen 151 LLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLT---ITFPSSIKAVALDP 227 (476)
T ss_pred EEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEE---EecCCcceeEEEcc
Confidence 87532 12344566788899999999999865678999999999999999998532222 23334445567788
Q ss_pred eCCEEEEeeCCCeEEEEEcCCCc------------eeeeeeeeecCccc--ceEEEEeecccceeeeCeEEEEccCCCcE
Q 038537 236 IEKLIFSGSEDTTIRVWRRAEGG------------CYHECLAVLDGHRG--PVRCLAASLEMEKVVMGFLVYSSSLDQTF 301 (358)
Q Consensus 236 ~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~h~~--~v~~i~~~~~~~~~~~~~~l~s~~~dg~v 301 (358)
.+..++.|+.+|.|.+.++.... .....+..+.+|.+ +|+|++.+-| |.+|++|+.||.|
T Consensus 228 ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D------gtlLlSGd~dg~V 301 (476)
T KOG0646|consen 228 AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD------GTLLLSGDEDGKV 301 (476)
T ss_pred cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC------ccEEEeeCCCCCE
Confidence 89999999999999998876543 11234667789988 9999999999 8999999999999
Q ss_pred EEEEeeeCCCCcceeeccccc
Q 038537 302 KVWRVKVMPDQEKTMCLDYSD 322 (358)
Q Consensus 302 ~iw~~~~~~~~~~~~~~~~~~ 322 (358)
+|||+. ..+|++.+.
T Consensus 302 cvWdi~------S~Q~iRtl~ 316 (476)
T KOG0646|consen 302 CVWDIY------SKQCIRTLQ 316 (476)
T ss_pred EEEecc------hHHHHHHHh
Confidence 999998 456666555
No 77
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.7e-30 Score=207.08 Aligned_cols=257 Identities=18% Similarity=0.246 Sum_probs=208.1
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccc
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQ 86 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (358)
-.+.||+..+....+.+......|.++.| ||.++++|...|.|+|+|+.+...++ .+.
T Consensus 48 ~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR--------------------~~~ 107 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR--------------------QLY 107 (487)
T ss_pred cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH--------------------HHh
Confidence 35889999888888877777888888877 69999999999999999966533222 457
Q ss_pred cCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcee
Q 038537 87 QHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVY 164 (358)
Q Consensus 87 ~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~ 164 (358)
+|+.+|..+.|+|.+ ..+++|++|+.+++||+.+.. ....+.+|++.|.|.+|+| ++..+++|+.||.|++||++.
T Consensus 108 ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~ 185 (487)
T KOG0310|consen 108 AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRS 185 (487)
T ss_pred hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEecc
Confidence 999999999999954 577889999999999999887 4667889999999999999 566899999999999999976
Q ss_pred cCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee--eCCEEEE
Q 038537 165 RENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA--IEKLIFS 242 (358)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~ 242 (358)
.. ....+ -.|..+|..+.+.| .|..+++++. ..+++||+-++.. .......|...|+|+.. ++..|++
T Consensus 186 ~~---~~v~e-lnhg~pVe~vl~lp--sgs~iasAgG-n~vkVWDl~~G~q---ll~~~~~H~KtVTcL~l~s~~~rLlS 255 (487)
T KOG0310|consen 186 LT---SRVVE-LNHGCPVESVLALP--SGSLIASAGG-NSVKVWDLTTGGQ---LLTSMFNHNKTVTCLRLASDSTRLLS 255 (487)
T ss_pred CC---ceeEE-ecCCCceeeEEEcC--CCCEEEEcCC-CeEEEEEecCCce---ehhhhhcccceEEEEEeecCCceEee
Confidence 63 11222 23789999999998 8889998865 5799999986432 22224448888888765 5699999
Q ss_pred eeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 243 GSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 243 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
|+-|+.+++||+.+- +.+..+ ...++|.+++.+|+ ++.++.|-.||.+.+=+...
T Consensus 256 ~sLD~~VKVfd~t~~----Kvv~s~-~~~~pvLsiavs~d------d~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 256 GSLDRHVKVFDTTNY----KVVHSW-KYPGPVLSIAVSPD------DQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred cccccceEEEEccce----EEEEee-ecccceeeEEecCC------CceEEEecccceeeeehhhc
Confidence 999999999997765 556555 45789999999999 78999999999988875443
No 78
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=214.06 Aligned_cols=278 Identities=19% Similarity=0.285 Sum_probs=226.5
Q ss_pred eCCCcEEEEeCCCceee---------eeeeecccceEEEEecCC-EEEEEeCCceEEEEecccccccccccccccCCCce
Q 038537 6 SSSTRIRVWRQPDCVER---------GFIKARHGEVRAILAHDN-MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 6 ~~dg~v~vw~~~~~~~~---------~~~~~h~~~v~~i~~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
-.+.+|..|.++..... ..+.+|...|.++++..+ .++..+..+.|++|+..+.++++...
T Consensus 341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~--------- 411 (888)
T KOG0306|consen 341 LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT--------- 411 (888)
T ss_pred eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec---------
Confidence 44567777776541111 456789999999988544 44444457799999999998876533
Q ss_pred eeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG 155 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 155 (358)
.+-+.+..|-|.++++++|...|.+.++|+.... .+.+.++|.+.|.+++.+||+..+++|+.|.
T Consensus 412 -------------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~--l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk 476 (888)
T KOG0306|consen 412 -------------CGYILASKFVPGDRYIVLGTKNGELQVFDLASAS--LVETIRAHDGAIWSISLSPDNKGFVTGSADK 476 (888)
T ss_pred -------------cccEEEEEecCCCceEEEeccCCceEEEEeehhh--hhhhhhccccceeeeeecCCCCceEEecCCc
Confidence 2258899999999999999999999999999887 7778889999999999999999999999999
Q ss_pred cEEEEEceecCC--cc--e-eee---eecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccc
Q 038537 156 SVKIWRRVYREN--SH--T-LTM---TLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC 227 (358)
Q Consensus 156 ~i~~wd~~~~~~--~~--~-~~~---~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 227 (358)
+|++||...-.. .. + +.. ..-.-...|.|++++| |+.+|+++-.|.++++|-+.+ .++...+.||.
T Consensus 477 tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp--dgk~LaVsLLdnTVkVyflDt----lKFflsLYGHk 550 (888)
T KOG0306|consen 477 TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP--DGKLLAVSLLDNTVKVYFLDT----LKFFLSLYGHK 550 (888)
T ss_pred EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC--CCcEEEEEeccCeEEEEEecc----eeeeeeecccc
Confidence 999999753221 00 0 000 1112356899999999 999999999999999999998 55666688999
Q ss_pred ceeEEE--eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 228 FAVLCL--VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 228 ~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
.+|.|+ +|++++++||+.|..|++|-+.-| .+-..+.+|...|.++.|.|. ..++.|+|.|+.|+-||
T Consensus 551 LPV~smDIS~DSklivTgSADKnVKiWGLdFG----DCHKS~fAHdDSvm~V~F~P~------~~~FFt~gKD~kvKqWD 620 (888)
T KOG0306|consen 551 LPVLSMDISPDSKLIVTGSADKNVKIWGLDFG----DCHKSFFAHDDSVMSVQFLPK------THLFFTCGKDGKVKQWD 620 (888)
T ss_pred cceeEEeccCCcCeEEeccCCCceEEeccccc----hhhhhhhcccCceeEEEEccc------ceeEEEecCcceEEeec
Confidence 999776 689999999999999999999998 667888899999999999998 78999999999999999
Q ss_pred eeeCCCCcceeecccccCCCCccc
Q 038537 306 VKVMPDQEKTMCLDYSDYHSNSKT 329 (358)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~ 329 (358)
-. +..++..+.+|.....
T Consensus 621 g~------kFe~iq~L~~H~~ev~ 638 (888)
T KOG0306|consen 621 GE------KFEEIQKLDGHHSEVW 638 (888)
T ss_pred hh------hhhhheeeccchheee
Confidence 87 6677788888766544
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5e-30 Score=190.66 Aligned_cols=245 Identities=17% Similarity=0.250 Sum_probs=199.8
Q ss_pred eeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC-
Q 038537 23 GFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH- 99 (358)
Q Consensus 23 ~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~- 99 (358)
+.+.+|...|.++++ +|..|++|+.|+++++|+++..+.... ....+|.+.|-.++|+|
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~------------------~~~~gh~~svdql~w~~~ 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE------------------LVYRGHTDSVDQLCWDPK 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh------------------hcccCCCcchhhheeCCC
Confidence 456788999999988 588999999999999999987643322 13478999999999988
Q ss_pred CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccC
Q 038537 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ 179 (358)
Q Consensus 100 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 179 (358)
....+++++.|.+|++||++.++ +........+ =.-+.|+|+|.+++++..|..|...|.++.+...... ..
T Consensus 76 ~~d~~atas~dk~ir~wd~r~~k--~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-----~~ 147 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRSGK--CTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-----FK 147 (313)
T ss_pred CCcceEEecCCceEEEEEeccCc--EEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-----cc
Confidence 45689999999999999999998 6655544333 3457899999999999999999999997655333222 24
Q ss_pred CceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe--eeCCEEEEeeCCCeEEEEEcCCC
Q 038537 180 SSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV--AIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
..+..+.|+. ++++++.....|+|.|..... .+....+..|+..+.|+. |+|++||+|+.|..+.+||+...
T Consensus 148 ~e~ne~~w~~--~nd~Fflt~GlG~v~ILsyps----Lkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL 221 (313)
T KOG1407|consen 148 FEVNEISWNN--SNDLFFLTNGLGCVEILSYPS----LKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL 221 (313)
T ss_pred ceeeeeeecC--CCCEEEEecCCceEEEEeccc----cccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh
Confidence 5667788875 677777777789999998876 556666888988887764 67999999999999999999887
Q ss_pred ceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 258 GCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 258 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
-+++.+..+.-+|..++|+.+ |++||+||+|..|-|=++++.
T Consensus 222 ----iC~R~isRldwpVRTlSFS~d------g~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 222 ----ICERCISRLDWPVRTLSFSHD------GRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred ----hhheeeccccCceEEEEeccC------cceeeccCccceEEeEecccC
Confidence 567888889999999999999 999999999999888777643
No 80
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.9e-30 Score=209.11 Aligned_cols=297 Identities=14% Similarity=0.217 Sum_probs=214.0
Q ss_pred EEeeeCCCcEEEEeCCCcee----eeee-eecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 2 VFTGSSSTRIRVWRQPDCVE----RGFI-KARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~----~~~~-~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
|++|+.|-.|++||+..... -+.+ ......|.++.+ .++.|++.+.....+|+|-+..+.....+-...-
T Consensus 182 ~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI--- 258 (641)
T KOG0772|consen 182 FVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYI--- 258 (641)
T ss_pred eeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhh---
Confidence 78999999999999864321 1111 223345566655 6888888888889999998765544332211110
Q ss_pred eeeeecCCCccccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCccccccccc-----ccccCeEEEEEcCCCCEE
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCVDSFV-----AHESNVNAIVVNQDDGFV 148 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l 148 (358)
.....-+||...++|.+|+|.. ..+++++.||+++|||+...+. ....++ +..-+++.++|++++..|
T Consensus 259 -----~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~-q~qVik~k~~~g~Rv~~tsC~~nrdg~~i 332 (641)
T KOG0772|consen 259 -----RDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS-QLQVIKTKPAGGKRVPVTSCAWNRDGKLI 332 (641)
T ss_pred -----hhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh-heeEEeeccCCCcccCceeeecCCCcchh
Confidence 1112347999999999999965 5789999999999999986541 222222 234578999999999999
Q ss_pred EEEeCCCcEEEEEceecCCcceeeeeecccCC--ceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccc-cceeec
Q 038537 149 FTCSSDGSVKIWRRVYRENSHTLTMTLKFQQS--SVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH-GGFLQG 225 (358)
Q Consensus 149 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~ 225 (358)
++|+.||.|.+|+........ ....-.+|.. .|+++.|++ +|++|++-+.|+++++||++..+..... ......
T Consensus 333 Aagc~DGSIQ~W~~~~~~v~p-~~~vk~AH~~g~~Itsi~FS~--dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~ 409 (641)
T KOG0772|consen 333 AAGCLDGSIQIWDKGSRTVRP-VMKVKDAHLPGQDITSISFSY--DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP 409 (641)
T ss_pred hhcccCCceeeeecCCccccc-ceEeeeccCCCCceeEEEecc--ccchhhhccCCCceeeeeccccccchhhhcCCCcc
Confidence 999999999999974433222 2233456666 999999998 9999999999999999999986543322 222334
Q ss_pred ccceeEEEeeeCCEEEEee------CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCC
Q 038537 226 HCFAVLCLVAIEKLIFSGS------EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQ 299 (358)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg 299 (358)
....-+||+|+.++|++|. ..|.+.+||..+- +.+..+.-....|..+.|+|. =+.|..|+.||
T Consensus 410 ~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~----d~v~ki~i~~aSvv~~~Whpk------LNQi~~gsgdG 479 (641)
T KOG0772|consen 410 FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL----DTVYKIDISTASVVRCLWHPK------LNQIFAGSGDG 479 (641)
T ss_pred CCCCccccCCCceEEEecccccCCCCCceEEEEeccce----eeEEEecCCCceEEEEeecch------hhheeeecCCC
Confidence 4455689999999999986 4578999999887 556666666888999999998 45778888899
Q ss_pred cEEEEEeeeCCCCcceeeccc
Q 038537 300 TFKVWRVKVMPDQEKTMCLDY 320 (358)
Q Consensus 300 ~v~iw~~~~~~~~~~~~~~~~ 320 (358)
.+++|==.+....-...|+..
T Consensus 480 ~~~vyYdp~~S~RGak~cv~k 500 (641)
T KOG0772|consen 480 TAHVYYDPNESIRGAKLCVVK 500 (641)
T ss_pred ceEEEECccccccchhheeec
Confidence 999975555444434444443
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=4.4e-30 Score=221.70 Aligned_cols=244 Identities=28% Similarity=0.422 Sum_probs=211.6
Q ss_pred cccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEE
Q 038537 28 RHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTG 107 (358)
Q Consensus 28 h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 107 (358)
+...+.+..++++++++++.|++|++|+...+..+.. .+.+|.+.|+++++..-+.+|++|
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~-------------------~l~GH~g~V~~l~~~~~~~~lvsg 267 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILT-------------------RLVGHFGGVWGLAFPSGGDKLVSG 267 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEEe-------------------eccCCCCCceeEEEecCCCEEEEE
Confidence 4567778888999999999999999999998876542 247999999999998778899999
Q ss_pred ecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEE
Q 038537 108 SFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187 (358)
Q Consensus 108 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~ 187 (358)
+.|.++++||..+++ +...+.+|.+.|.++... ...+++|+.|.+|++|++.++ .....+.+|..+|.++..
T Consensus 268 S~D~t~rvWd~~sg~--C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~----~~l~l~~~h~~~V~~v~~ 339 (537)
T KOG0274|consen 268 STDKTERVWDCSTGE--CTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNG----ACLNLLRGHTGPVNCVQL 339 (537)
T ss_pred ecCCcEEeEecCCCc--EEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCc----ceEEEeccccccEEEEEe
Confidence 999999999999999 899999999999999875 567888999999999999644 344555669999999998
Q ss_pred eecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeC-CEEEEeeCCCeEEEEEcCCCceeeeeeee
Q 038537 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE-KLIFSGSEDTTIRVWRRAEGGCYHECLAV 266 (358)
Q Consensus 188 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 266 (358)
++.++++|+.|+.|++||+.+ .+....+.+|...|.++..++ +.+++|+.|+.|++||+.+.. +++.+
T Consensus 340 ----~~~~lvsgs~d~~v~VW~~~~----~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~---~c~~t 408 (537)
T KOG0274|consen 340 ----DEPLLVSGSYDGTVKVWDPRT----GKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR---KCIHT 408 (537)
T ss_pred ----cCCEEEEEecCceEEEEEhhh----ceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh---hhhhh
Confidence 578999999999999999997 667777899999999999998 999999999999999999973 57889
Q ss_pred ecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccC
Q 038537 267 LDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDY 323 (358)
Q Consensus 267 ~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 323 (358)
+.+|.+-+..+.+. +++|++++.||+|++||..+ ..|+..+..
T Consensus 409 l~~h~~~v~~l~~~--------~~~Lvs~~aD~~Ik~WD~~~------~~~~~~~~~ 451 (537)
T KOG0274|consen 409 LQGHTSLVSSLLLR--------DNFLVSSSADGTIKLWDAEE------GECLRTLEG 451 (537)
T ss_pred hcCCcccccccccc--------cceeEeccccccEEEeeccc------Cceeeeecc
Confidence 99999999888776 45999999999999999884 445555554
No 82
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=2.2e-29 Score=187.29 Aligned_cols=252 Identities=18% Similarity=0.236 Sum_probs=202.9
Q ss_pred EEeeeCCCcEEEEeCCCceeee--eeeecccceEEEEe---cCCEEEEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERG--FIKARHGEVRAILA---HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~--~~~~h~~~v~~i~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
|++|+.|+++++|++...+... ...+|.+.|-.+.+ +++.+++++.|.+|++||...+++.....
T Consensus 35 lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~---------- 104 (313)
T KOG1407|consen 35 LASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE---------- 104 (313)
T ss_pred eeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee----------
Confidence 7899999999999998765443 45689988888877 46799999999999999999888764322
Q ss_pred eeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
....=.-+.|+|+|.+++.++.|..|.+.|.++.+ ..... .....+..++|+.++++++.....|.
T Consensus 105 -----------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~--~~~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 105 -----------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYK--IVNEE-QFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred -----------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccc--eeehh-cccceeeeeeecCCCCEEEEecCCce
Confidence 22223458899999999999999999999998876 33333 34567888999988888888888899
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeE--EEe
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL--CLV 234 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~ 234 (358)
|.|... ...+....+++|.....|+.|+| +|++|++|+.|..+.+||+.. ....+.+..+.-+|. +|+
T Consensus 171 v~ILsy----psLkpv~si~AH~snCicI~f~p--~GryfA~GsADAlvSLWD~~E----LiC~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 171 VEILSY----PSLKPVQSIKAHPSNCICIEFDP--DGRYFATGSADALVSLWDVDE----LICERCISRLDWPVRTLSFS 240 (313)
T ss_pred EEEEec----cccccccccccCCcceEEEEECC--CCceEeeccccceeeccChhH----hhhheeeccccCceEEEEec
Confidence 999877 45556677888999999999998 999999999999999999987 444455555655664 555
Q ss_pred eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 235 AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 235 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
.+|++||+|++|..|-|=++.+|. .+..+ .+.++...++|+|. ..+||-++.|
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd----~~~eI-~~~~~t~tVAWHPk------~~LLAyA~dd 293 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGD----RVWEI-PCEGPTFTVAWHPK------RPLLAYACDD 293 (313)
T ss_pred cCcceeeccCccceEEeEecccCC----eEEEe-eccCCceeEEecCC------CceeeEEecC
Confidence 689999999999999999999995 34444 47889999999999 5577776655
No 83
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2e-29 Score=191.23 Aligned_cols=244 Identities=17% Similarity=0.186 Sum_probs=190.2
Q ss_pred ecccceEEEEecC---CEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCE
Q 038537 27 ARHGEVRAILAHD---NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGL 103 (358)
Q Consensus 27 ~h~~~v~~i~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 103 (358)
.....|.+++|.+ ..++++|+||+||+|+++....... .....|.++|.+++|+.+|..
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~Wsddgsk 86 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSK 86 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCce
Confidence 3456788888854 5777999999999999987422211 133679999999999999999
Q ss_pred EEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCC--EEEEEeCCCcEEEEEceecCCcceeeeeecccCCc
Q 038537 104 LYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDG--FVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSS 181 (358)
Q Consensus 104 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~ 181 (358)
+++|+.|+.+++||+.+++ ...+..|.++|.++.|-+... .|++|+.|.+|+.||.+.......+. ....
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q---~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-----LPeR 158 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQ---VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-----LPER 158 (347)
T ss_pred EEeeccCCceEEEEccCCC---eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-----ccce
Confidence 9999999999999999997 667788999999999987555 89999999999999997554433332 2456
Q ss_pred eeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceee
Q 038537 182 VNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYH 261 (358)
Q Consensus 182 i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 261 (358)
+.++.. ...+++++..++.|.+|+++.+...++..........+.+++..+....+.|+-+|.+.+..+..+..
T Consensus 159 vYa~Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-- 232 (347)
T KOG0647|consen 159 VYAADV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-- 232 (347)
T ss_pred eeehhc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc--
Confidence 666655 46789999999999999998865555444434445555666667777779999999999999887532
Q ss_pred eeeeeecCcc---------cceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 262 ECLAVLDGHR---------GPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 262 ~~~~~~~~h~---------~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+.-.+++.|. ..|++|+|+|. ...|+|+|.||++.+||-+.
T Consensus 233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~------hgtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHPV------HGTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred cCceeEEEeccCCCCCCceEEecceEeecc------cceEEEecCCceEEEecchh
Confidence 2334455554 26889999998 67999999999999999764
No 84
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=1.6e-29 Score=211.64 Aligned_cols=254 Identities=25% Similarity=0.402 Sum_probs=209.5
Q ss_pred EEeeeCCCcEEEEeCCCceee--eeeeecccceEE-EEe---cCCEEEEEeCCceEEEEecccccccccccccccCCCce
Q 038537 2 VFTGSSSTRIRVWRQPDCVER--GFIKARHGEVRA-ILA---HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~--~~~~~h~~~v~~-i~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
++++|.||++++|+-...+.+ ..+.+|.+.|.. +++ ++..+++|+.|++|.+|...+..++
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~------------- 94 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPL------------- 94 (745)
T ss_pred EeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCch-------------
Confidence 688999999999997665544 456677777765 554 4567999999999999999876654
Q ss_pred eeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG 155 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 155 (358)
.++.+|...|.|++...++. +++||.|.++++|.... +...+++|...|.++..-|++ .+++|+.|.
T Consensus 95 -------~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~----l~~~l~gH~asVWAv~~l~e~-~~vTgsaDK 161 (745)
T KOG0301|consen 95 -------YTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE----LVYSLQGHTASVWAVASLPEN-TYVTGSADK 161 (745)
T ss_pred -------hhhhccccceeeeecCCcCc-eEecccccceEEecchh----hhcccCCcchheeeeeecCCC-cEEeccCcc
Confidence 36689999999999887776 99999999999998743 456689999999999999887 899999999
Q ss_pred cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe-
Q 038537 156 SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV- 234 (358)
Q Consensus 156 ~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~- 234 (358)
+|++|.- .+....+.+|...|+.+++.+ ...|++++.||.|++|++.. .......+|..-+.+++
T Consensus 162 tIklWk~------~~~l~tf~gHtD~VRgL~vl~---~~~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~vYsis~ 227 (745)
T KOG0301|consen 162 TIKLWKG------GTLLKTFSGHTDCVRGLAVLD---DSHFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFVYSISM 227 (745)
T ss_pred eeeeccC------CchhhhhccchhheeeeEEec---CCCeEeecCCceEEEEeccC-----ceeeeeeccceEEEEEEe
Confidence 9999953 455677889999999999995 66799999999999999954 44555788999888887
Q ss_pred -eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 235 -AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 235 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.++..++++++|++++||+.. ++.+.+.-..-.|+++.+-++ | -+++|+.||.||||..+.
T Consensus 228 ~~~~~~Ivs~gEDrtlriW~~~------e~~q~I~lPttsiWsa~~L~N------g-DIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 228 ALSDGLIVSTGEDRTLRIWKKD------ECVQVITLPTTSIWSAKVLLN------G-DIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred cCCCCeEEEecCCceEEEeecC------ceEEEEecCccceEEEEEeeC------C-CEEEeccCceEEEEEecc
Confidence 467899999999999999877 345555444558999998887 4 477888999999998873
No 85
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=6.8e-29 Score=215.09 Aligned_cols=224 Identities=14% Similarity=0.170 Sum_probs=166.9
Q ss_pred EeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC-CCEEEEEecCCeEEEEEccCCcc
Q 038537 45 TNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA-EGLLYTGSFDKTVKAWRVLDKRC 123 (358)
Q Consensus 45 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~ 123 (358)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v--------------------~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~ 109 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV--------------------IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDE 109 (568)
T ss_pred CCceeEEEeeecCCCceE--------------------EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCc
Confidence 566788888887643221 144789999999999996 78999999999999999976421
Q ss_pred ------cccccccccccCeEEEEEcCCCCE-EEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEE
Q 038537 124 ------TCVDSFVAHESNVNAIVVNQDDGF-VFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFL 196 (358)
Q Consensus 124 ------~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 196 (358)
.++..+.+|...|.+++|+|++.. +++++.|+.|++||++++.... .+. +...|.+++|+| ++.+|
T Consensus 110 ~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~----~i~-~~~~V~Slswsp--dG~lL 182 (568)
T PTZ00420 110 SVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF----QIN-MPKKLSSLKWNI--KGNLL 182 (568)
T ss_pred cccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE----EEe-cCCcEEEEEECC--CCCEE
Confidence 123456789999999999998875 5688999999999997665322 222 457899999998 99999
Q ss_pred EEeecCCcEEEEEccCCcCCccccceeeccccee-------EEEeeeCCEEEEeeCCC----eEEEEEcCCCceeeeeee
Q 038537 197 YSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV-------LCLVAIEKLIFSGSEDT----TIRVWRRAEGGCYHECLA 265 (358)
Q Consensus 197 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~ 265 (358)
++++.|+.|++||++++. ....+.+|...+ ..+++++.+|++++.|+ .|+|||++... +++.
T Consensus 183 at~s~D~~IrIwD~Rsg~----~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~---~pl~ 255 (568)
T PTZ00420 183 SGTCVGKHMHIIDPRKQE----IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT---SALV 255 (568)
T ss_pred EEEecCCEEEEEECCCCc----EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC---CceE
Confidence 999999999999999843 233455665432 12346778999888764 79999999642 3343
Q ss_pred ee--cCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 266 VL--DGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 266 ~~--~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.. ..+.+.+......++ +.++++|+.|+.|++|++..
T Consensus 256 ~~~ld~~~~~L~p~~D~~t------g~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 256 TMSIDNASAPLIPHYDEST------GLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEecCCccceEEeeeCCC------CCEEEEEECCCeEEEEEccC
Confidence 33 333344444444445 78999999999999999964
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-28 Score=186.99 Aligned_cols=250 Identities=17% Similarity=0.260 Sum_probs=198.2
Q ss_pred ceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEE
Q 038537 19 CVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMA 96 (358)
Q Consensus 19 ~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 96 (358)
.+..+.+..-.+.|.++.+ +|.++++++.|.++++||..+++..+. +..+.-.+..++
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t--------------------i~skkyG~~~~~ 63 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT--------------------INSKKYGVDLAC 63 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE--------------------eecccccccEEE
Confidence 3445566666788999988 588999999999999999998877643 345556688888
Q ss_pred EeCCCCEEEEEec--CCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeee
Q 038537 97 FYHAEGLLYTGSF--DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMT 174 (358)
Q Consensus 97 ~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 174 (358)
|......++.++. |.+|+..++.+.+ .++.+.+|...|.+|+.+|-+..+++++.|++|++||++..+....+.
T Consensus 64 Fth~~~~~i~sStk~d~tIryLsl~dNk--ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~-- 139 (311)
T KOG1446|consen 64 FTHHSNTVIHSSTKEDDTIRYLSLHDNK--YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN-- 139 (311)
T ss_pred EecCCceEEEccCCCCCceEEEEeecCc--eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe--
Confidence 8777777777666 8899999999998 899999999999999999999999999999999999998665444332
Q ss_pred ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCC-cCCccccceee--cccceeEEEeeeCCEEEEeeCCCeEEE
Q 038537 175 LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKM-SGGFNHGGFLQ--GHCFAVLCLVAIEKLIFSGSEDTTIRV 251 (358)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~i 251 (358)
...-..++|.| .|-++|++.....|++||++.. ++++....... ...-.-+.++++|++|+.++..+.+++
T Consensus 140 ----~~~~pi~AfDp--~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~ 213 (311)
T KOG1446|consen 140 ----LSGRPIAAFDP--EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYL 213 (311)
T ss_pred ----cCCCcceeECC--CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEE
Confidence 34445688998 8999999988889999999985 33332221111 222344778899999999999999999
Q ss_pred EEcCCCceeeeeeeeecCcccce---EEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 252 WRRAEGGCYHECLAVLDGHRGPV---RCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 252 wd~~~~~~~~~~~~~~~~h~~~v---~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.|..+|. ....+.++...- ...+|.|+ ++++++|+.||+|.+|++++
T Consensus 214 lDAf~G~----~~~tfs~~~~~~~~~~~a~ftPd------s~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 214 LDAFDGT----VKSTFSGYPNAGNLPLSATFTPD------SKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred EEccCCc----EeeeEeeccCCCCcceeEEECCC------CcEEEEecCCCcEEEEEcCC
Confidence 9999994 455555554322 56789999 89999999999999999964
No 87
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=1.1e-29 Score=222.80 Aligned_cols=286 Identities=20% Similarity=0.246 Sum_probs=219.6
Q ss_pred EEeee--CCCcEEEEeCCC------------ceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccc
Q 038537 2 VFTGS--SSTRIRVWRQPD------------CVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTK 65 (358)
Q Consensus 2 l~tg~--~dg~v~vw~~~~------------~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 65 (358)
++||+ .||.++||+... .+.+.+...|.+.|.|+.| ||.+||+|+.|+.|.||..... ...
T Consensus 28 ~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~---~~~ 104 (942)
T KOG0973|consen 28 FATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEI---GSG 104 (942)
T ss_pred EecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeeccc---CCc
Confidence 68899 899999998631 3456777889999999976 7889999999999999998741 101
Q ss_pred ccccc-CCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC
Q 038537 66 KVTTL-PRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD 144 (358)
Q Consensus 66 ~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (358)
..... ......-.+.....+.+|...|..++|+|++.+|++++.|++|.+||..+.+ .+..+.+|.+.|..+.|+|-
T Consensus 105 ~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~--~~~vl~~H~s~VKGvs~DP~ 182 (942)
T KOG0973|consen 105 TVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE--LLKVLRGHQSLVKGVSWDPI 182 (942)
T ss_pred ccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce--eeeeeecccccccceEECCc
Confidence 11100 1112223444556778999999999999999999999999999999999986 88999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEEceecCCcceeeeeec--ccCCceeEEEEeecCCCcEEEEeec----CCcEEEEEccCCcCCcc
Q 038537 145 DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLK--FQQSSVNALALSSFFDNYFLYSGSS----DGSINFWEKDKMSGGFN 218 (358)
Q Consensus 145 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~ 218 (358)
|++|++-+.|++|++|++..-.....+...+. ........+.|+| +|.+|++... -.++.|.+-.+ ..
T Consensus 183 Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP--DG~~las~nA~n~~~~~~~IieR~t----Wk 256 (942)
T KOG0973|consen 183 GKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP--DGHHLASPNAVNGGKSTIAIIERGT----WK 256 (942)
T ss_pred cCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC--CcCeecchhhccCCcceeEEEecCC----ce
Confidence 99999999999999999644222222222222 1234567788888 9999998754 33577777655 55
Q ss_pred ccceeecccceeEEEeeeC-------C------------EEEEeeCCCeEEEEEcCCCceeeeeeeeec-CcccceEEEE
Q 038537 219 HGGFLQGHCFAVLCLVAIE-------K------------LIFSGSEDTTIRVWRRAEGGCYHECLAVLD-GHRGPVRCLA 278 (358)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~-------~------------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~i~ 278 (358)
....+.||..++.++.+++ + .+|+|+.|++|.||..... +++.... -....|.+++
T Consensus 257 ~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~----RPl~vi~~lf~~SI~Dms 332 (942)
T KOG0973|consen 257 VDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP----RPLFVIHNLFNKSIVDMS 332 (942)
T ss_pred eeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC----CchhhhhhhhcCceeeee
Confidence 5556788888877665421 1 6789999999999999776 4443332 2456899999
Q ss_pred eecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 279 ASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 279 ~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
|+|+ |..|+.+|.||+|.+..++.
T Consensus 333 Wspd------G~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 333 WSPD------GFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred EcCC------CCeEEEEecCCeEEEEEcch
Confidence 9999 89999999999999999875
No 88
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.1e-30 Score=201.16 Aligned_cols=266 Identities=17% Similarity=0.180 Sum_probs=206.7
Q ss_pred eeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEE
Q 038537 20 VERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAF 97 (358)
Q Consensus 20 ~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 97 (358)
+..+.+..|...|+-+.| +|++||+++.|.+..+|.+.....++. ..++.+|..+|..+.|
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl-----------------~~tlvgh~~~V~yi~w 277 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKL-----------------KKTLVGHSQPVSYIMW 277 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceee-----------------eeeeecccCceEEEEE
Confidence 345667889999998876 688999999999999999876554322 2366899999999999
Q ss_pred eCCCCEEEEEecCCeEEEEEccCCccccccccc-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeec
Q 038537 98 YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFV-AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLK 176 (358)
Q Consensus 98 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 176 (358)
+||.++|++|+.|..+.+||+.++. ....+. ++...+.+++|.||+..+++|+.|+.+..||+..... ...+
T Consensus 278 SPDdryLlaCg~~e~~~lwDv~tgd--~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~-----~~W~ 350 (519)
T KOG0293|consen 278 SPDDRYLLACGFDEVLSLWDVDTGD--LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL-----GNWE 350 (519)
T ss_pred CCCCCeEEecCchHheeeccCCcch--hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh-----hccc
Confidence 9999999999999999999999998 444433 3467899999999999999999999999999854321 1111
Q ss_pred c-cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcC
Q 038537 177 F-QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRA 255 (358)
Q Consensus 177 ~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 255 (358)
+ ....|.++++.+ ||.++++.+.|..|++|+.+....... ....+.....+++-+++++++.-.+..+++||+.
T Consensus 351 gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~l---ise~~~its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 351 GVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRGL---ISEEQPITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred ccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhcc---ccccCceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 1 235689999998 999999999999999999887322211 1233445556777889999999999999999999
Q ss_pred CCceeeeeeeeecCcccce--EEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCCccc
Q 038537 256 EGGCYHECLAVLDGHRGPV--RCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNSKT 329 (358)
Q Consensus 256 ~~~~~~~~~~~~~~h~~~v--~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (358)
.. ..+..+.||...- ..-+|--.+ ..++++||+|+.|+||+.. .+..+..+.+|.....
T Consensus 426 e~----~lv~kY~Ghkq~~fiIrSCFgg~~-----~~fiaSGSED~kvyIWhr~------sgkll~~LsGHs~~vN 486 (519)
T KOG0293|consen 426 EN----KLVRKYFGHKQGHFIIRSCFGGGN-----DKFIASGSEDSKVYIWHRI------SGKLLAVLSGHSKTVN 486 (519)
T ss_pred hh----hHHHHhhcccccceEEEeccCCCC-----cceEEecCCCceEEEEEcc------CCceeEeecCCcceee
Confidence 66 5677788887642 233444321 4799999999999999988 4556777778875533
No 89
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=6.4e-29 Score=189.08 Aligned_cols=256 Identities=16% Similarity=0.203 Sum_probs=198.0
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe-cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA-HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
.|++++.||++++|++....+... -.|..++.+.+| +...+++|+.||.|+.+|+.++...
T Consensus 27 ~LLvssWDgslrlYdv~~~~l~~~-~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~----------------- 88 (323)
T KOG1036|consen 27 DLLVSSWDGSLRLYDVPANSLKLK-FKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED----------------- 88 (323)
T ss_pred cEEEEeccCcEEEEeccchhhhhh-eecCCceeeeeccCCceEEEeccCceEEEEEecCCcce-----------------
Confidence 378888999999999988755444 458899999988 5679999999999999999987654
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
.+..|..+|.||.+++....+++|++|++|++||.+... ....+. ....|.++... ++.|++|+.|..+.+
T Consensus 89 ----~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~--~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~i 159 (323)
T KOG1036|consen 89 ----QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV--VVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLI 159 (323)
T ss_pred ----eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc--cccccc-cCceEEEEecc--CCEEEEeecCceEEE
Confidence 347899999999999988899999999999999998754 344443 34588888775 788999999999999
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec-----------ccc
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG-----------HCF 228 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----------~~~ 228 (358)
||++......+ .......-.+.++++.| ++.=+++++-||.|.+=.+..........-.+.. ++.
T Consensus 160 yDLRn~~~~~q--~reS~lkyqtR~v~~~p--n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 160 YDLRNLDEPFQ--RRESSLKYQTRCVALVP--NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred EEcccccchhh--hccccceeEEEEEEEec--CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 99986654331 12223356789999998 7777899999999988666553111111111222 233
Q ss_pred eeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccC
Q 038537 229 AVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSL 297 (358)
Q Consensus 229 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~ 297 (358)
..++|+|--+.|+||+.||.|.+||+.+. +.+..+......|.+++|+.+ |..||.++.
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~r----Krl~q~~~~~~SI~slsfs~d------G~~LAia~s 294 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNR----KRLKQLAKYETSISSLSFSMD------GSLLAIASS 294 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcch----hhhhhccCCCCceEEEEeccC------CCeEEEEec
Confidence 34566666789999999999999999987 456667666778999999999 889998875
No 90
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1.1e-29 Score=202.76 Aligned_cols=239 Identities=20% Similarity=0.240 Sum_probs=191.8
Q ss_pred CEEeeeCCCcEEEEeCCCc----------eeeeeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPDC----------VERGFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKV 67 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~----------~~~~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 67 (358)
++|+++..+.|.|||..+. .+-..+.+|...-.+++|+ ...|++++.|++|++||+........
T Consensus 139 iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~--- 215 (422)
T KOG0264|consen 139 IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDK--- 215 (422)
T ss_pred EEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCc---
Confidence 4788999999999997532 2233788999887788885 56899999999999999986544211
Q ss_pred cccCCCceeeeecCCCccccCCCceEEEEEeC-CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CC
Q 038537 68 TTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH-AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DD 145 (358)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 145 (358)
...+...+.+|.+.|..++|++ +..++++++.|+.+.|||+++...++.....+|.++|.|++|+| ++
T Consensus 216 ----------~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~ 285 (422)
T KOG0264|consen 216 ----------VVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE 285 (422)
T ss_pred ----------cccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCC
Confidence 1112234589999999999998 45688899999999999999644346777889999999999999 66
Q ss_pred CEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCC---------
Q 038537 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGG--------- 216 (358)
Q Consensus 146 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------- 216 (358)
..||+|+.|++|.+||+|.- ......+..|...|..+.|+| .....|++++.|+.+.+||+..-...
T Consensus 286 ~ilAT~S~D~tV~LwDlRnL---~~~lh~~e~H~dev~~V~WSP-h~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 286 FILATGSADKTVALWDLRNL---NKPLHTFEGHEDEVFQVEWSP-HNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred ceEEeccCCCcEEEeechhc---ccCceeccCCCcceEEEEeCC-CCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence 78899999999999999844 346678889999999999999 46789999999999999999863222
Q ss_pred -ccccceeecccceeEEEeeeC---CEEEEeeCCCeEEEEEcCC
Q 038537 217 -FNHGGFLQGHCFAVLCLVAIE---KLIFSGSEDTTIRVWRRAE 256 (358)
Q Consensus 217 -~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~ 256 (358)
..+.....||...|..+++++ -.|++.++|+.+.||.+..
T Consensus 362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 223345668999998888764 5788999999999999874
No 91
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.2e-30 Score=214.30 Aligned_cols=271 Identities=21% Similarity=0.356 Sum_probs=216.7
Q ss_pred CEEeeeCCCcEEEEeCCCce------eeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCC
Q 038537 1 MVFTGSSSTRIRVWRQPDCV------ERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPR 72 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~------~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 72 (358)
+|+||+.||.|++|+...-. .+..+..|...|+.+.. +++.|+++|.|-+|++|+...+...
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~---------- 108 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF---------- 108 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch----------
Confidence 58999999999999985322 36778899999998754 6789999999999999998866311
Q ss_pred CceeeeecCCCccccCCCceEEEEE-eCCCCEEEEEecCCeEEEEEccCCccccc--------cccc-ccccCeEEEEEc
Q 038537 73 RSSFLSFSKSNTQQQHRDCVSCMAF-YHAEGLLYTGSFDKTVKAWRVLDKRCTCV--------DSFV-AHESNVNAIVVN 142 (358)
Q Consensus 73 ~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~~-~~~~~v~~~~~~ 142 (358)
...++..|.+-|.|+++ .++..++|+|+.|+.|.+||+.++....+ ..+. ++..+|.+++.+
T Consensus 109 --------c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N 180 (735)
T KOG0308|consen 109 --------CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN 180 (735)
T ss_pred --------hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC
Confidence 11255789999999999 78888999999999999999997632112 2223 678899999999
Q ss_pred CCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccce
Q 038537 143 QDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF 222 (358)
Q Consensus 143 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 222 (358)
+.+..|++|+.++.+++||.++.+. ...+++|...|..+..++ +|..+++++.||+|++||+.. ......
T Consensus 181 ~t~t~ivsGgtek~lr~wDprt~~k----imkLrGHTdNVr~ll~~d--DGt~~ls~sSDgtIrlWdLgq----QrCl~T 250 (735)
T KOG0308|consen 181 QTGTIIVSGGTEKDLRLWDPRTCKK----IMKLRGHTDNVRVLLVND--DGTRLLSASSDGTIRLWDLGQ----QRCLAT 250 (735)
T ss_pred CcceEEEecCcccceEEeccccccc----eeeeeccccceEEEEEcC--CCCeEeecCCCceEEeeeccc----cceeee
Confidence 9999999999999999999987664 345568999999999998 999999999999999999998 344444
Q ss_pred eecccceeEEEe--eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCc
Q 038537 223 LQGHCFAVLCLV--AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQT 300 (358)
Q Consensus 223 ~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~ 300 (358)
+..|...+.++. ++-..+++|+.||.|+.=|+++.. ....+.....+|..+..+.. .+-+-+++.|+.
T Consensus 251 ~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~----~~tlick~daPv~~l~~~~~------~~~~WvtTtds~ 320 (735)
T KOG0308|consen 251 YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPA----KSTLICKEDAPVLKLHLHEH------DNSVWVTTTDSS 320 (735)
T ss_pred EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCch----hheEeecCCCchhhhhhccc------cCCceeeecccc
Confidence 667777776664 455799999999999999999852 22333345667888888865 334577788999
Q ss_pred EEEEEeeeC
Q 038537 301 FKVWRVKVM 309 (358)
Q Consensus 301 v~iw~~~~~ 309 (358)
|+-|..+..
T Consensus 321 I~rW~~~~~ 329 (735)
T KOG0308|consen 321 IKRWKLEPD 329 (735)
T ss_pred ceecCCccc
Confidence 999988753
No 92
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=194.53 Aligned_cols=244 Identities=19% Similarity=0.292 Sum_probs=198.8
Q ss_pred EEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCe
Q 038537 33 RAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKT 112 (358)
Q Consensus 33 ~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~ 112 (358)
..+++++++|++|+.||.|.+||..+++..+..+.. ....+.-+.++|.|++|+.|...|++|+.||.
T Consensus 219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQ------------Aqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQ------------AQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred eeeCCCCceEeeccccceeeeehhccchhhhhhhhh------------hhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 345678999999999999999999998765543322 22244678999999999999999999999999
Q ss_pred EEEEEccCCccccccccc-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecC
Q 038537 113 VKAWRVLDKRCTCVDSFV-AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFF 191 (358)
Q Consensus 113 i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 191 (358)
|++|.+.++. +++.|. .|+..|+|+.|+.|+..+++++.|.++++.-+..++ ....+++|.+.|+...|.+
T Consensus 287 IKvWri~tG~--ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK----~LKEfrGHsSyvn~a~ft~-- 358 (508)
T KOG0275|consen 287 IKVWRIETGQ--CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK----CLKEFRGHSSYVNEATFTD-- 358 (508)
T ss_pred EEEEEEecch--HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch----hHHHhcCccccccceEEcC--
Confidence 9999999999 888887 899999999999999999999999999999886554 4566788999999999998
Q ss_pred CCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE---eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeec
Q 038537 192 DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL---VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLD 268 (358)
Q Consensus 192 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 268 (358)
+|..+++++.||+|++|+..+......+. ..+...++..+ ..++..++++...++|+|-++.. +.+..+.
T Consensus 359 dG~~iisaSsDgtvkvW~~KtteC~~Tfk--~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-----QvVrsfs 431 (508)
T KOG0275|consen 359 DGHHIISASSDGTVKVWHGKTTECLSTFK--PLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-----QVVRSFS 431 (508)
T ss_pred CCCeEEEecCCccEEEecCcchhhhhhcc--CCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-----eEEeeec
Confidence 99999999999999999998855433322 12233334333 34678899999999999999876 3444443
Q ss_pred C---cccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 269 G---HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 269 ~---h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
. ..+...+...+|. |.++.+.++|+.++.+.+...
T Consensus 432 SGkREgGdFi~~~lSpk------GewiYcigED~vlYCF~~~sG 469 (508)
T KOG0275|consen 432 SGKREGGDFINAILSPK------GEWIYCIGEDGVLYCFSVLSG 469 (508)
T ss_pred cCCccCCceEEEEecCC------CcEEEEEccCcEEEEEEeecC
Confidence 2 3456677789999 889999999999999998753
No 93
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.6e-30 Score=211.47 Aligned_cols=242 Identities=23% Similarity=0.325 Sum_probs=202.5
Q ss_pred cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEE
Q 038537 38 HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWR 117 (358)
Q Consensus 38 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 117 (358)
++++|++||.||.|++|+........... ....++.|.+.|..+....+++.|++++.|-+|++|+
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~--------------~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~ 101 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTP--------------YIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWN 101 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccc--------------hhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEee
Confidence 56789999999999999988654321111 1235588999999999999999999999999999999
Q ss_pred ccCCcccccccccccccCeEEEEE-cCCCCEEEEEeCCCcEEEEEceecCC-------cceeeeeecccCCceeEEEEee
Q 038537 118 VLDKRCTCVDSFVAHESNVNAIVV-NQDDGFVFTCSSDGSVKIWRRVYREN-------SHTLTMTLKFQQSSVNALALSS 189 (358)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~ 189 (358)
...+..-+..++..|.+.|.|+++ -++...+++|+-|+.|.+||+.++.. .........++..+|++++.++
T Consensus 102 ~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~ 181 (735)
T KOG0308|consen 102 AHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ 181 (735)
T ss_pred cccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence 987754478889999999999999 77888999999999999999987632 1111111226788999999998
Q ss_pred cCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeee
Q 038537 190 FFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVL 267 (358)
Q Consensus 190 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 267 (358)
.+..+++|+..+.+++||.++.+ ....+.+|...|.++ ..+|..+++++.||+|++||+... +++.++
T Consensus 182 --t~t~ivsGgtek~lr~wDprt~~----kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ----rCl~T~ 251 (735)
T KOG0308|consen 182 --TGTIIVSGGTEKDLRLWDPRTCK----KIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ----RCLATY 251 (735)
T ss_pred --cceEEEecCcccceEEecccccc----ceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc----ceeeeE
Confidence 88999999999999999999843 344477998887665 568999999999999999999887 778889
Q ss_pred cCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 268 DGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 268 ~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
..|...|.++..+|+ =..+.+|+.||.|..=|+++.
T Consensus 252 ~vH~e~VWaL~~~~s------f~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 252 IVHKEGVWALQSSPS------FTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred EeccCceEEEeeCCC------cceEEecCCCCcEEecccCCc
Confidence 999999999999998 679999999999999999875
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6e-29 Score=200.14 Aligned_cols=241 Identities=20% Similarity=0.314 Sum_probs=190.8
Q ss_pred cccceEEEEecC---CEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEE
Q 038537 28 RHGEVRAILAHD---NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLL 104 (358)
Q Consensus 28 h~~~v~~i~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 104 (358)
..+.|.+++|++ .-+++.+. -.+.||+..+....+ ++....+.+.+++|-.||++|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k--------------------~~srFk~~v~s~~fR~DG~Ll 83 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRK--------------------TFSRFKDVVYSVDFRSDGRLL 83 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhh--------------------hHHhhccceeEEEeecCCeEE
Confidence 346788888864 34444432 378999987665543 223456779999999999999
Q ss_pred EEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC-CCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCcee
Q 038537 105 YTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD-DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVN 183 (358)
Q Consensus 105 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~ 183 (358)
++|+..|.|+++|+.+.. .+..+.+|..+|..+.|+|+ +..+++|+.|+.+++||+.+.. ....+.+|...|.
T Consensus 84 aaGD~sG~V~vfD~k~r~--iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~----v~~~l~~htDYVR 157 (487)
T KOG0310|consen 84 AAGDESGHVKVFDMKSRV--ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY----VQAELSGHTDYVR 157 (487)
T ss_pred EccCCcCcEEEeccccHH--HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE----EEEEecCCcceeE
Confidence 999999999999976655 78889999999999999995 5577788888999999996544 3557788999999
Q ss_pred EEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeee
Q 038537 184 ALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHEC 263 (358)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 263 (358)
+.+++| .++.++++|+.||.|++||++... ........+++....++-|.|..|++++.+ .|++||+.++. +.
T Consensus 158 ~g~~~~-~~~hivvtGsYDg~vrl~DtR~~~--~~v~elnhg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~---ql 230 (487)
T KOG0310|consen 158 CGDISP-ANDHIVVTGSYDGKVRLWDTRSLT--SRVVELNHGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGG---QL 230 (487)
T ss_pred eecccc-CCCeEEEecCCCceEEEEEeccCC--ceeEEecCCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCc---ee
Confidence 999999 456799999999999999999842 122222334445556666788999998764 59999999774 56
Q ss_pred eeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 264 LAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 264 ~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+..+..|...|+|+++..+ +..|+|||-|+.|++||+.+
T Consensus 231 l~~~~~H~KtVTcL~l~s~------~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASD------STRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred hhhhhcccceEEEEEeecC------CceEeecccccceEEEEccc
Confidence 6666679999999999998 78999999999999999664
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.1e-29 Score=183.21 Aligned_cols=234 Identities=20% Similarity=0.229 Sum_probs=186.1
Q ss_pred EEeeeCCCcEEEEeCCCc---eeeeeeeecccceEEEEe----cCCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 2 VFTGSSSTRIRVWRQPDC---VERGFIKARHGEVRAILA----HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~---~~~~~~~~h~~~v~~i~~----~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
|||+++|++|+|+...+. +++..+.+|.++|..+.+ -|++||+++.||.|.||.-.+++-.+
T Consensus 26 lATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k----------- 94 (299)
T KOG1332|consen 26 LATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTK----------- 94 (299)
T ss_pred eeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhh-----------
Confidence 899999999999998653 568899999999999987 37899999999999999988773221
Q ss_pred eeeeecCCCccccCCCceEEEEEeCC--CCEEEEEecCCeEEEEEccCC-cccccccccccccCeEEEEEcCC---C---
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHA--EGLLYTGSFDKTVKAWRVLDK-RCTCVDSFVAHESNVNAIVVNQD---D--- 145 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~---~--- 145 (358)
......|...|++++|.|. |-.|++++.||.|.|.+.+.. ..........|.-.|++++|.|. |
T Consensus 95 -------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 95 -------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred -------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 1234689999999999985 568999999999999999876 44445566789999999999985 4
Q ss_pred --------CEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecC--CCcEEEEeecCCcEEEEEccCCcC
Q 038537 146 --------GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFF--DNYFLYSGSSDGSINFWEKDKMSG 215 (358)
Q Consensus 146 --------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~ 215 (358)
..|++|+.|..|+||+...+ ...+...+.+|..-|+.++|.|.- ...+|++++.||++.||..+....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 46999999999999998765 445556688999999999999942 246899999999999998774322
Q ss_pred Cccccceeeccccee--EEEeeeCCEEEEeeCCCeEEEEEcCC
Q 038537 216 GFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAE 256 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~ 256 (358)
..+. ..+...+..+ .++++.|++|+.++.|+.|.+|.-..
T Consensus 246 ~wk~-tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 246 PWKK-TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cccc-cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 2221 1122223333 55667899999999999999997654
No 96
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=2.1e-28 Score=186.33 Aligned_cols=243 Identities=16% Similarity=0.175 Sum_probs=187.6
Q ss_pred cccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEE
Q 038537 28 RHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLY 105 (358)
Q Consensus 28 h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 105 (358)
....|.++.+. ++.|+++++||++++|++........ -.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~---------------------~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLK---------------------FKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhh---------------------eecCCceeeeeccC-CceEE
Confidence 35678888775 56788888999999999987643321 46889999999986 56799
Q ss_pred EEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEE
Q 038537 106 TGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNAL 185 (358)
Q Consensus 106 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~ 185 (358)
+|+.||.|+.+|+.++. ...+..|..+|.||.+.+....+++|+.|++|++||.+........ . ....|.++
T Consensus 70 ~G~~dg~vr~~Dln~~~---~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~----d-~~kkVy~~ 141 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGN---EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF----D-QGKKVYCM 141 (323)
T ss_pred EeccCceEEEEEecCCc---ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc----c-cCceEEEE
Confidence 99999999999999886 5566789999999999998899999999999999999753222221 1 23477777
Q ss_pred EEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeee
Q 038537 186 ALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLA 265 (358)
Q Consensus 186 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 265 (358)
.. .++.|++|+.|..+.+||+++....++....-.....+.+++-|++.-+++++-||.|.+=.+...+...+...
T Consensus 142 ~v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skky 217 (323)
T KOG1036|consen 142 DV----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKY 217 (323)
T ss_pred ec----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhce
Confidence 76 57889999999999999999976555332222223334455556778889999999998876665533233445
Q ss_pred eecCccc---------ceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 266 VLDGHRG---------PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 266 ~~~~h~~---------~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
.++.|.. +|++|+|+|- ...|+|||.||.|.+||+.+.+
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp~------~~tfaTgGsDG~V~~Wd~~~rK 265 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHPI------HGTFATGGSDGIVNIWDLFNRK 265 (323)
T ss_pred eEEeeecccCCceEEEEeceeEeccc------cceEEecCCCceEEEccCcchh
Confidence 5666643 8999999998 6799999999999999998643
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2e-28 Score=185.87 Aligned_cols=256 Identities=16% Similarity=0.226 Sum_probs=195.9
Q ss_pred CEEeeeCCCcEEEEeCCC-cee-eeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 1 MVFTGSSSTRIRVWRQPD-CVE-RGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~-~~~-~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
++++||.||+||+|++.. +.. -+....|.++|.+++| +|..+++|+.|+.+++||+.+++..
T Consensus 42 ~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~-------------- 107 (347)
T KOG0647|consen 42 LLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS-------------- 107 (347)
T ss_pred eEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee--------------
Confidence 467999999999999976 332 2555679999999998 5789999999999999999998654
Q ss_pred eeecCCCccccCCCceEEEEEeCCCC--EEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFYHAEG--LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 154 (358)
.+..|.++|.++.|-+... .|+||+.|++|+.||++... ++.++. ..+.+.++..- ..+++++..+
T Consensus 108 -------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~--pv~t~~-LPeRvYa~Dv~--~pm~vVata~ 175 (347)
T KOG0647|consen 108 -------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN--PVATLQ-LPERVYAADVL--YPMAVVATAE 175 (347)
T ss_pred -------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCC--eeeeee-ccceeeehhcc--CceeEEEecC
Confidence 3368999999999987655 89999999999999999776 555554 35667777653 5688899999
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccc-------
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC------- 227 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~------- 227 (358)
+.|.+|+++.+....+... ....-.+++++... +....+.|+-+|.+.+..+..+.... ...+..|.
T Consensus 176 r~i~vynL~n~~te~k~~~--SpLk~Q~R~va~f~--d~~~~alGsiEGrv~iq~id~~~~~~--nFtFkCHR~~~~~~~ 249 (347)
T KOG0647|consen 176 RHIAVYNLENPPTEFKRIE--SPLKWQTRCVACFQ--DKDGFALGSIEGRVAIQYIDDPNPKD--NFTFKCHRSTNSVND 249 (347)
T ss_pred CcEEEEEcCCCcchhhhhc--CcccceeeEEEEEe--cCCceEeeeecceEEEEecCCCCccC--ceeEEEeccCCCCCC
Confidence 9999999976543332221 12345688999888 77777999999999999988753211 11222222
Q ss_pred --ce--eEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEE-EccCC
Q 038537 228 --FA--VLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVY-SSSLD 298 (358)
Q Consensus 228 --~~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~-s~~~d 298 (358)
.. -++|+|.-..|++++.||++.+||-... ..+.+.+.|..+|++.+|+.+ |.+++ +.|.|
T Consensus 250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar----~kLk~s~~~~qpItcc~fn~~------G~ifaYA~gYD 315 (347)
T KOG0647|consen 250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR----TKLKTSETHPQPITCCSFNRN------GSIFAYALGYD 315 (347)
T ss_pred ceEEecceEeecccceEEEecCCceEEEecchhh----hhhhccCcCCCccceeEecCC------CCEEEEEeecc
Confidence 12 2566777789999999999999998776 457777889999999999998 65554 33444
No 98
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=2.7e-30 Score=200.56 Aligned_cols=243 Identities=19% Similarity=0.278 Sum_probs=199.1
Q ss_pred eeeeeeecccceEEEEecCC---EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEE
Q 038537 21 ERGFIKARHGEVRAILAHDN---MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAF 97 (358)
Q Consensus 21 ~~~~~~~h~~~v~~i~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 97 (358)
.+..+.+|...|.+++-+++ .+++|+.||.|+|||+....+.. ++.+|.+.|..|++
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~--------------------~f~AH~G~V~Gi~v 117 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR--------------------TFKAHEGLVRGICV 117 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh--------------------eeecccCceeeEEe
Confidence 34567899999999988765 58999999999999999876654 45789999999999
Q ss_pred eCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecc
Q 038537 98 YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKF 177 (358)
Q Consensus 98 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 177 (358)
.. ..+++++.|.+|+.|.+... +..++.+ .+.+..|.-+..++.+++++++ |.|||..... +...+.-
T Consensus 118 ~~--~~~~tvgdDKtvK~wk~~~~---p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~----Pv~smsw 185 (433)
T KOG0268|consen 118 TQ--TSFFTVGDDKTVKQWKIDGP---PLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN----PVSSMSW 185 (433)
T ss_pred cc--cceEEecCCcceeeeeccCC---cceeeec-cccccccccccccccccccCce--eeecccccCC----ccceeec
Confidence 76 67899999999999998763 4555543 5667888877778889988764 9999985433 3344445
Q ss_pred cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 178 QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
....|.++.|+| -....|++|..|+.|.+||++......+. .......-.|+.|..-.+++|++|..++.||++..
T Consensus 186 G~Dti~svkfNp-vETsILas~~sDrsIvLyD~R~~~Pl~KV---i~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 186 GADSISSVKFNP-VETSILASCASDRSIVLYDLRQASPLKKV---ILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred CCCceeEEecCC-CcchheeeeccCCceEEEecccCCcccee---eeeccccceecCccccceeeccccccceehhhhhh
Confidence 677899999999 45678888889999999999986654444 33344455788887788899999999999999987
Q ss_pred ceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 258 GCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 258 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+ .++....+|...|.++.|+|. |+-+++||.|.+|+||.++.
T Consensus 262 ~---~p~~v~~dhvsAV~dVdfspt------G~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 262 S---RPLNVHKDHVSAVMDVDFSPT------GQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred c---ccchhhcccceeEEEeccCCC------cchhccccccceEEEeecCC
Confidence 5 788999999999999999999 89999999999999999984
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-28 Score=186.38 Aligned_cols=242 Identities=16% Similarity=0.221 Sum_probs=189.4
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecC----CEEEEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHD----NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
++|+|+.|-+|+|||+.+...+..+..|.+.|+++.|.+ +.|++|+.||.|.+|+...-.++
T Consensus 55 ~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~-------------- 120 (362)
T KOG0294|consen 55 YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELL-------------- 120 (362)
T ss_pred eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEe--------------
Confidence 589999999999999999999999999999999998853 37999999999999999866544
Q ss_pred eeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
.++.+|.+.|+.++.+|.+++.++.+.|+.++.||+-.++...+..+. ...+.+.|+|.|.+++.+..++
T Consensus 121 ------~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~---~~at~v~w~~~Gd~F~v~~~~~- 190 (362)
T KOG0294|consen 121 ------KSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK---NKATLVSWSPQGDHFVVSGRNK- 190 (362)
T ss_pred ------eeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC---CcceeeEEcCCCCEEEEEeccE-
Confidence 355789999999999999999999999999999999988854444443 2334599999999999888765
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee-
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA- 235 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 235 (358)
|-+|.+........+. ....+.++.|. ++..|++|..|+.|.+||... ......+.+|..+|-.+.+
T Consensus 191 i~i~q~d~A~v~~~i~-----~~~r~l~~~~l---~~~~L~vG~d~~~i~~~D~ds----~~~~~~~~AH~~RVK~i~~~ 258 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIE-----NPKRILCATFL---DGSELLVGGDNEWISLKDTDS----DTPLTEFLAHENRVKDIASY 258 (362)
T ss_pred EEEEecccHhHhhhhh-----ccccceeeeec---CCceEEEecCCceEEEeccCC----CccceeeecchhheeeeEEE
Confidence 8899885444322222 12456666665 789999999999999999987 3445558899999988874
Q ss_pred ---eCCEEEEeeCCCeEEEEEcCCCce-eeeeeeeecCcccceEEEEe
Q 038537 236 ---IEKLIFSGSEDTTIRVWRRAEGGC-YHECLAVLDGHRGPVRCLAA 279 (358)
Q Consensus 236 ---~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~h~~~v~~i~~ 279 (358)
.+.+|++++.||.|++||+..... ..+++..+.. ..+++|+..
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~ 305 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRV 305 (362)
T ss_pred ecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeee
Confidence 346999999999999999987521 1123333322 345555543
No 100
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.97 E-value=1.6e-28 Score=203.79 Aligned_cols=278 Identities=18% Similarity=0.235 Sum_probs=205.6
Q ss_pred CEEeeeCCCcEEEEeCCCcee------eeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCC
Q 038537 1 MVFTGSSSTRIRVWRQPDCVE------RGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPR 72 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~------~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 72 (358)
+|+.+..||.|.++|...... ......|.+.|..+.+- ...|++++.|.++++||+.+.......
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~------- 138 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR------- 138 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-------
Confidence 588999999999999865433 25567899999999874 458999999999999999988765431
Q ss_pred CceeeeecCCCccccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCccc-------------------------cc
Q 038537 73 RSSFLSFSKSNTQQQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCT-------------------------CV 126 (358)
Q Consensus 73 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~-------------------------~~ 126 (358)
.+.+|...|.+++|.|.. ..+++|+.||.|.|||++..... .+
T Consensus 139 -----------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 139 -----------LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred -----------eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 236999999999999954 57899999999999998643210 01
Q ss_pred ccccccccCeEE---EEEcCCCCEEEEEeC-CCcEEEEEceecCCcceee--e--eeccc---CCceeEEEEeecCCCcE
Q 038537 127 DSFVAHESNVNA---IVVNQDDGFVFTCSS-DGSVKIWRRVYRENSHTLT--M--TLKFQ---QSSVNALALSSFFDNYF 195 (358)
Q Consensus 127 ~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~--~--~~~~~---~~~i~~~~~~~~~~~~~ 195 (358)
.....+...|.+ +.+..|...|++++. |+.|+|||++......... . .+..+ .-.+.++.... .|.+
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs--sGt~ 285 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS--SGTY 285 (720)
T ss_pred cccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC--CCCe
Confidence 111234444544 555568888998888 9999999998764332211 1 11112 23456666655 6788
Q ss_pred EEEeecCCcEEEEEccCCcCCccccceeecccc----eeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcc
Q 038537 196 LYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCF----AVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHR 271 (358)
Q Consensus 196 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~ 271 (358)
|++.+.|+.|++|++..... .....+.++.. .-.+++|++.++++|+.|...++|.+.+.+ .....+.+|.
T Consensus 286 L~AsCtD~sIy~ynm~s~s~--sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e---~~~~~l~Ght 360 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSI--SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE---APPALLLGHT 360 (720)
T ss_pred EEEEecCCcEEEEeccccCc--CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc---CChhhhhCcc
Confidence 88888899999999987432 22222333322 225678999999999999999999999875 5677888999
Q ss_pred cceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 272 GPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 272 ~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
-.|++++|.|... .-++++++|-.++||++.+
T Consensus 361 ~eVt~V~w~pS~~-----t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 361 REVTTVRWLPSAT-----TPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred eEEEEEeeccccC-----CCceeeccCcceEEEeccC
Confidence 9999999999743 4577789999999999965
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=7.8e-27 Score=170.52 Aligned_cols=259 Identities=18% Similarity=0.251 Sum_probs=191.5
Q ss_pred cccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEE
Q 038537 28 RHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLY 105 (358)
Q Consensus 28 h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 105 (358)
....|.++.| .|.+.++|+...+++|-....-...+... ..+.....+.+ ..-+.|.+.|.|.+|+|+|.+|+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~h--ea~~~pp~v~~---kr~khhkgsiyc~~ws~~gelia 105 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAH--EAAKQPPSVLC---KRNKHHKGSIYCTAWSPCGELIA 105 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCccccc--ccccCCCeEEe---eeccccCccEEEEEecCccCeEE
Confidence 3456777776 57899999999999987655332221110 00000000111 12257899999999999999999
Q ss_pred EEecCCeEEEEEccCCccc---ccccccccccCeEEEEEcCC----CCEEEEEe-CCCcEEEEEceecCCcceeeeeecc
Q 038537 106 TGSFDKTVKAWRVLDKRCT---CVDSFVAHESNVNAIVVNQD----DGFVFTCS-SDGSVKIWRRVYRENSHTLTMTLKF 177 (358)
Q Consensus 106 ~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~~~~----~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~ 177 (358)
+|+.|.+|++..++..... .-..+..|.+.|..++|..+ +..|++++ .|..|++-|...++ ....+.+
T Consensus 106 tgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~----~~~a~sg 181 (350)
T KOG0641|consen 106 TGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ----GFHALSG 181 (350)
T ss_pred ecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC----cceeecC
Confidence 9999999999887654422 23456789999999999753 34566654 36677777775444 3445667
Q ss_pred cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec-----ccceeEEEeeeCCEEEEeeCCCeEEEE
Q 038537 178 QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG-----HCFAVLCLVAIEKLIFSGSEDTTIRVW 252 (358)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~dg~i~iw 252 (358)
|.+.|.++.- . ++-++++|+.|.+|++||++-..........+.+ .....+++.|.|++|++|-.|....+|
T Consensus 182 htghilalys-w--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly 258 (350)
T KOG0641|consen 182 HTGHILALYS-W--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY 258 (350)
T ss_pred CcccEEEEEE-e--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence 8888877743 3 7999999999999999999975544333322222 233446778899999999999999999
Q ss_pred EcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 253 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
|++.+ ++++.+..|...|.++.|+|. ..+|++++.|..|++=|++-
T Consensus 259 dirg~----r~iq~f~phsadir~vrfsp~------a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 259 DIRGG----RMIQRFHPHSADIRCVRFSPG------AHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred EeeCC----ceeeeeCCCccceeEEEeCCC------ceEEEEecccceEEEeeccc
Confidence 99999 789999999999999999998 78999999999999999874
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.1e-27 Score=191.65 Aligned_cols=271 Identities=23% Similarity=0.337 Sum_probs=212.4
Q ss_pred CEEeeeCCCcEEEEeCCCceeee-----------------ee-eecccceEEE--EecCCEEEEEeCCceEEEEeccccc
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERG-----------------FI-KARHGEVRAI--LAHDNMLFTTNKDCKIRIWNFTVSD 60 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~-----------------~~-~~h~~~v~~i--~~~~~~l~s~~~dg~i~iw~~~~~~ 60 (358)
++++++.||+|.=|++.+++... .- .+|...+.++ +.++.+|++|+.|..|.||+.++.+
T Consensus 156 ~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e 235 (479)
T KOG0299|consen 156 RVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE 235 (479)
T ss_pred ceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcccc
Confidence 36789999999999987665321 01 2566677766 4589999999999999999999887
Q ss_pred ccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEE
Q 038537 61 NFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIV 140 (358)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 140 (358)
.+. .+.+|.+.|.+++|-.....|++++.|++|++|+++... .+.++.+|.+.|..|.
T Consensus 236 hv~--------------------~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s--~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 236 HVK--------------------VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS--YVETLYGHQDGVLGID 293 (479)
T ss_pred hhh--------------------cccccccceeeeeeecCccceeeeecCCceEEEehhHhH--HHHHHhCCccceeeec
Confidence 654 447999999999999888899999999999999998777 7889999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccc
Q 038537 141 VNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG 220 (358)
Q Consensus 141 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 220 (358)
...-++.+-+|+.|+++++|++... ....+.++.+.+.|++|- +...|++|+.+|.|.+|++.+.+..+...
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~ee-----sqlifrg~~~sidcv~~I---n~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEE-----SQLIFRGGEGSIDCVAFI---NDEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred hhcccceEEeccccceeEEEecccc-----ceeeeeCCCCCeeeEEEe---cccceeeccCCceEEEeeecccCceeEee
Confidence 9888888888889999999998322 234556778899999998 68899999999999999998855443321
Q ss_pred cee--------ecccceeEE--EeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCe
Q 038537 221 GFL--------QGHCFAVLC--LVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGF 290 (358)
Q Consensus 221 ~~~--------~~~~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~ 290 (358)
... ..++..+++ ..+..+++++|+.+|.|++|-+..+-....++..+. -.+-|++++|+++ |.
T Consensus 366 ~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~s------gk 438 (479)
T KOG0299|consen 366 LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNS------GK 438 (479)
T ss_pred ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccC------CC
Confidence 100 111123443 456789999999999999999998854446666665 6788999999999 66
Q ss_pred -EEEEccCCCcEEEEEeee
Q 038537 291 -LVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 291 -~l~s~~~dg~v~iw~~~~ 308 (358)
+++..+....+-=|-...
T Consensus 439 ~ivagiGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 439 RIVAGIGKEHRLGRWWCLK 457 (479)
T ss_pred EEEEecccccccceeeEee
Confidence 555666666666676653
No 103
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1.6e-27 Score=203.62 Aligned_cols=276 Identities=19% Similarity=0.269 Sum_probs=216.2
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecC--CEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHD--NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
++.|+.+|.+.+||+.+++.+.+++++...|+++...+ +.++.|..+|+|.++++..++.+..++
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk------------- 241 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK------------- 241 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE-------------
Confidence 67899999999999999999999999999999997754 689999999999999999888775433
Q ss_pred cCCCccccCCCceEEEEEeCCCC-EEEEEecCCeEEEEEccCCcccccccc-cccccCeEEEEEcCCCCEEEEEeCCCcE
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEG-LLYTGSFDKTVKAWRVLDKRCTCVDSF-VAHESNVNAIVVNQDDGFVFTCSSDGSV 157 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i 157 (358)
...+.|+.++|..||. .+++|+..|.+.+||++..+ .+... ..|.+.|....|.|....+++++.|..+
T Consensus 242 -------~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kk--l~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSl 312 (910)
T KOG1539|consen 242 -------QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKK--LINVTRNAHYGSVTGATFLPGEPVLVTAGADNSL 312 (910)
T ss_pred -------ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCe--eeeeeeccccCCcccceecCCCceEeeccCCCce
Confidence 2248899999999987 56667777999999999877 33333 4788999999999999999999999998
Q ss_pred EEEEceecCCcceeeeee--------------------------------------------------------------
Q 038537 158 KIWRRVYRENSHTLTMTL-------------------------------------------------------------- 175 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~-------------------------------------------------------------- 175 (358)
++|=..++.....+.+..
T Consensus 313 k~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 313 KVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEK 392 (910)
T ss_pred eEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhh
Confidence 888433111100000000
Q ss_pred ----------------------------------------------------cccCCceeEEEEeecCCCcEEEEeecCC
Q 038537 176 ----------------------------------------------------KFQQSSVNALALSSFFDNYFLYSGSSDG 203 (358)
Q Consensus 176 ----------------------------------------------------~~~~~~i~~~~~~~~~~~~~l~~~~~dg 203 (358)
+.....+++++.++ .|++.+.|...|
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~--CGNF~~IG~S~G 470 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF--CGNFVFIGYSKG 470 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec--cCceEEEeccCC
Confidence 00113456666666 888899999999
Q ss_pred cEEEEEccCCcCCccccceeecccceeEEEeee--CCEEEEeeCCCeEEEEEcCCCce----------------------
Q 038537 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI--EKLIFSGSEDTTIRVWRRAEGGC---------------------- 259 (358)
Q Consensus 204 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~---------------------- 259 (358)
.|-+|+++++.....+. ....|...++.++.| ++.+++++.+|.+.+||......
T Consensus 471 ~Id~fNmQSGi~r~sf~-~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~ 549 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFG-DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLL 549 (910)
T ss_pred eEEEEEcccCeeecccc-cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhh
Confidence 99999998854333322 235788888888877 47799999999999999887542
Q ss_pred ---------------eeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 260 ---------------YHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 260 ---------------~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.++.++.+.+|.+.|++++|||+ |++|++++.|++||+||+.+
T Consensus 550 a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D------grWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 550 AIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD------GRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred hhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCC------CcEEEEeecCCcEEEEeccC
Confidence 11235567789999999999999 99999999999999999984
No 104
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-28 Score=204.79 Aligned_cols=225 Identities=23% Similarity=0.338 Sum_probs=193.5
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeee-cccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKA-RHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~-h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
+|++|..+|.|.|||..+.+.+..+.+ |...|-++++++..+.+|+.||.|..+|+...+....
T Consensus 231 ~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~--------------- 295 (484)
T KOG0305|consen 231 HLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS--------------- 295 (484)
T ss_pred EEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhh---------------
Confidence 489999999999999999999999998 9999999999999999999999999999987765432
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEe--CCCc
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCS--SDGS 156 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~--~dg~ 156 (358)
.+.+|...|..++|++++.++|+|+.|+.+.|||....+ +...+..|.+.|.+++|+| ...+||+|+ .|+.
T Consensus 296 ----~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~--p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~ 369 (484)
T KOG0305|consen 296 ----TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE--PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC 369 (484)
T ss_pred ----hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc--ccEEEeccceeeeEeeeCCCccCceEEcCCCcccE
Confidence 247899999999999999999999999999999996666 7888899999999999999 667888875 4999
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEE--eecCCcEEEEEccCCcCCccccceeecccceeEEE-
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYS--GSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL- 233 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~- 233 (358)
|++||..++.....+. ....|..+.|++ ..+.|++ |..+..|.||+..+ ......+.+|..+|+.+
T Consensus 370 i~fwn~~~g~~i~~vd-----tgsQVcsL~Wsk--~~kEi~sthG~s~n~i~lw~~ps----~~~~~~l~gH~~RVl~la 438 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVD-----TGSQVCSLIWSK--KYKELLSTHGYSENQITLWKYPS----MKLVAELLGHTSRVLYLA 438 (484)
T ss_pred EEEEEcCCCcEecccc-----cCCceeeEEEcC--CCCEEEEecCCCCCcEEEEeccc----cceeeeecCCcceeEEEE
Confidence 9999998665443332 478999999998 5555555 44577899999988 55566688999998655
Q ss_pred -eeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 234 -VAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 234 -~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
+|++..+++|+.|.++++|++...
T Consensus 439 ~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 439 LSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ECCCCCEEEEecccCcEEeccccCC
Confidence 688999999999999999999875
No 105
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=5.1e-29 Score=196.57 Aligned_cols=250 Identities=21% Similarity=0.203 Sum_probs=195.5
Q ss_pred eeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC
Q 038537 22 RGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99 (358)
Q Consensus 22 ~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 99 (358)
...+..|.+.+..+.| +.+.|++|+.|..|++|+....+.. ...++.+..+.|+.+.|.+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~------------------~~~tLaGs~g~it~~d~d~ 229 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSE------------------LISTLAGSLGNITSIDFDS 229 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhh------------------hhhhhhccCCCcceeeecC
Confidence 3456789999999988 4479999999999999999876521 1135578888999999999
Q ss_pred CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccC
Q 038537 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ 179 (358)
Q Consensus 100 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 179 (358)
+++.+++++.|+.+++|++...+ ...++.+|.+.|+++.|......+++|+.|.+|++||+........+.. .
T Consensus 230 ~~~~~iAas~d~~~r~Wnvd~~r--~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-----~ 302 (459)
T KOG0288|consen 230 DNKHVIAASNDKNLRLWNVDSLR--LRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-----G 302 (459)
T ss_pred CCceEEeecCCCceeeeeccchh--hhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-----c
Confidence 99999999999999999999888 7889999999999999997776799999999999999976554444332 3
Q ss_pred CceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCce
Q 038537 180 SSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGC 259 (358)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 259 (358)
+.+..+... ...+++|..|++|++||.+........ ..+.....+.+++++..|.+++.|..+.+.|+++.+.
T Consensus 303 S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv---~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI 375 (459)
T KOG0288|consen 303 SQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSV---PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI 375 (459)
T ss_pred ccccceEec----ceeeeecccccceEEEeccCCceeeEe---ecCcceeeEeeccCCeEEeeecCCCceeeeecccccE
Confidence 455566553 567899999999999999984332221 1222344466678899999999999999999999854
Q ss_pred eeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 260 YHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 260 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
.......-......++.+.|||+ +.|+++||.||.|+||++...
T Consensus 376 ~~~~sA~g~k~asDwtrvvfSpd------~~YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 376 RQTFSAEGFKCASDWTRVVFSPD------GSYVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred EEEeeccccccccccceeEECCC------CceeeeccCCCcEEEEEccCc
Confidence 22111111112335899999999 889999999999999999853
No 106
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.3e-27 Score=179.77 Aligned_cols=272 Identities=16% Similarity=0.219 Sum_probs=203.7
Q ss_pred eecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC--CC
Q 038537 26 KARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH--AE 101 (358)
Q Consensus 26 ~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~ 101 (358)
.+|..-|.+++|| |+++++|+.|++++|||.+...... ........|.+.|..+.|.+ -|
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W----------------~~Ts~Wrah~~Si~rV~WAhPEfG 73 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTW----------------SCTSSWRAHDGSIWRVVWAHPEFG 73 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCce----------------EEeeeEEecCCcEEEEEecCcccc
Confidence 4688889999874 9999999999999999976544322 22234578999999999965 47
Q ss_pred CEEEEEecCCeEEEEEccC-------CcccccccccccccCeEEEEEcC--CCCEEEEEeCCCcEEEEEceecCCcc--e
Q 038537 102 GLLYTGSFDKTVKAWRVLD-------KRCTCVDSFVAHESNVNAIVVNQ--DDGFVFTCSSDGSVKIWRRVYRENSH--T 170 (358)
Q Consensus 102 ~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~--~ 170 (358)
+.+|+++.|+++.||.-.. .++....++....+.|++++|.| -|-.+++++.||.+|||+.....+.. .
T Consensus 74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~ 153 (361)
T KOG2445|consen 74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT 153 (361)
T ss_pred ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence 8999999999999997521 23334455666778999999999 56789999999999999865332211 1
Q ss_pred eee-------eecccCCceeEEEEeecCC-CcEEEEeecC-----CcEEEEEccCCcCCccccceeecccceeEEEeeeC
Q 038537 171 LTM-------TLKFQQSSVNALALSSFFD-NYFLYSGSSD-----GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE 237 (358)
Q Consensus 171 ~~~-------~~~~~~~~i~~~~~~~~~~-~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (358)
+.. ....+..+..|+.|+|+.- ..+|++|+.+ +.++||..............+.+|..+|..+++.+
T Consensus 154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP 233 (361)
T KOG2445|consen 154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP 233 (361)
T ss_pred hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence 111 2224567888999987533 4567777665 48999998876656666677789999987776532
Q ss_pred ------CEEEEeeCCCeEEEEEcCCC----------------ceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEc
Q 038537 238 ------KLIFSGSEDTTIRVWRRAEG----------------GCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSS 295 (358)
Q Consensus 238 ------~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~ 295 (358)
.+||+++.|| |+||.+... +..-+.+..+.+|.+.|..+.|+-. |..|++.
T Consensus 234 n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt------GtiLsSt 306 (361)
T KOG2445|consen 234 NIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT------GTILSST 306 (361)
T ss_pred ccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee------eeEEeec
Confidence 5899999999 999998741 1123456678899999999999999 8999999
Q ss_pred cCCCcEEEEEeeeCCCCcceeecccccC
Q 038537 296 SLDQTFKVWRVKVMPDQEKTMCLDYSDY 323 (358)
Q Consensus 296 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~ 323 (358)
|.||.||+|.......- .|...+..
T Consensus 307 GdDG~VRLWkany~n~~---kC~sv~~~ 331 (361)
T KOG2445|consen 307 GDDGCVRLWKANYNNLW---KCTSVLKA 331 (361)
T ss_pred CCCceeeehhhhhhhhh---eeeeEEec
Confidence 99999999987654322 25554443
No 107
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=3.7e-28 Score=197.00 Aligned_cols=284 Identities=17% Similarity=0.190 Sum_probs=208.1
Q ss_pred eeeeeecccceEEEEec--CCEEEEEeCCceEEEEeccccccccc-ccccccCCCceeeeecCCCccccCCCceEEEEEe
Q 038537 22 RGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRT-KKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFY 98 (358)
Q Consensus 22 ~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 98 (358)
...+++|+..|.++.++ |..|++|+.|-+|++||+.....-.. ++. ........|.++.|+
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~----------------l~P~E~h~i~sl~ys 223 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ----------------LQPCETHQINSLQYS 223 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc----------------cCcccccccceeeec
Confidence 34667888899998875 77999999999999999986543211 110 112344568999999
Q ss_pred CCCCEEEEEecCCeEEEEEccCCcc----------cccccccccccCeEEEEEcCC-CCEEEEEeCCCcEEEEEceecCC
Q 038537 99 HAEGLLYTGSFDKTVKAWRVLDKRC----------TCVDSFVAHESNVNAIVVNQD-DGFVFTCSSDGSVKIWRRVYREN 167 (358)
Q Consensus 99 ~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~ 167 (358)
+.+..|++.+.....+++|-...++ ..+..-++|...++|.+|+|. .+.+++++.||++++||+...+.
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9999999888888999999654331 112223589999999999994 56899999999999999976554
Q ss_pred cceeeee--ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecc----cceeEEEeeeCCEEE
Q 038537 168 SHTLTMT--LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGH----CFAVLCLVAIEKLIF 241 (358)
Q Consensus 168 ~~~~~~~--~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~ 241 (358)
..+.... ..+..-+++.++|++ ++.+||+|+.||.|.+|+.......... ..-..| ....+.|+++|++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~-~vk~AH~~g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVM-KVKDAHLPGQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCcccccce-EeeeccCCCCceeEEEeccccchhh
Confidence 3333222 223445788999998 9999999999999999998663221111 112233 344566778999999
Q ss_pred EeeCCCeEEEEEcCCCceeeeeeeeecCc--ccceEEEEeecccceeeeCeEEEEccC------CCcEEEEEeeeCCCCc
Q 038537 242 SGSEDTTIRVWRRAEGGCYHECLAVLDGH--RGPVRCLAASLEMEKVVMGFLVYSSSL------DQTFKVWRVKVMPDQE 313 (358)
Q Consensus 242 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h--~~~v~~i~~~~~~~~~~~~~~l~s~~~------dg~v~iw~~~~~~~~~ 313 (358)
+-+.|+++++||++..+ +++.+..+- ..+-+.++|+|+ .++|++|.. -|.+.+||-.+.
T Consensus 381 SRg~D~tLKvWDLrq~k---kpL~~~tgL~t~~~~tdc~FSPd------~kli~TGtS~~~~~~~g~L~f~d~~t~---- 447 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFK---KPLNVRTGLPTPFPGTDCCFSPD------DKLILTGTSAPNGMTAGTLFFFDRMTL---- 447 (641)
T ss_pred hccCCCceeeeeccccc---cchhhhcCCCccCCCCccccCCC------ceEEEecccccCCCCCceEEEEeccce----
Confidence 99999999999999875 555555443 335688999999 788888864 467888887643
Q ss_pred ceeecccccCCCCccceeeecccCCCcccccccchhhhh
Q 038537 314 KTMCLDYSDYHSNSKTTTTKMDYEMSPVLSPSWVEKKMK 352 (358)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~W~~~~~~ 352 (358)
..+..+.+....|..+.|+++..|
T Consensus 448 ---------------d~v~ki~i~~aSvv~~~WhpkLNQ 471 (641)
T KOG0772|consen 448 ---------------DTVYKIDISTASVVRCLWHPKLNQ 471 (641)
T ss_pred ---------------eeEEEecCCCceEEEEeecchhhh
Confidence 235566667778888999998776
No 108
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=6.2e-28 Score=202.17 Aligned_cols=242 Identities=23% Similarity=0.407 Sum_probs=203.3
Q ss_pred ceeeeeeeecccceEEEEe-cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEE-EE
Q 038537 19 CVERGFIKARHGEVRAILA-HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSC-MA 96 (358)
Q Consensus 19 ~~~~~~~~~h~~~v~~i~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~ 96 (358)
-+..+.+.+|...|.++.. ++..++++|.||++++|+-...+.... ..+.+|.+.|.+ ++
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~------------------~~~~~~~g~i~~~i~ 65 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLET------------------HAFEGPKGFIANSIC 65 (745)
T ss_pred ceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccc------------------eecccCcceeeccce
Confidence 3566788999999998877 456799999999999999766554321 234677787877 88
Q ss_pred EeC-CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeee
Q 038537 97 FYH-AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTL 175 (358)
Q Consensus 97 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 175 (358)
+.+ ++..|++|+.|++|.+|...... +...+.+|...|.+++...++. +++|+.|.++++|.+ .++...+
T Consensus 66 y~e~~~~~l~~g~~D~~i~v~~~~~~~--P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~------~~l~~~l 136 (745)
T KOG0301|consen 66 YAESDKGRLVVGGMDTTIIVFKLSQAE--PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI------GELVYSL 136 (745)
T ss_pred eccccCcceEeecccceEEEEecCCCC--chhhhhccccceeeeecCCcCc-eEecccccceEEecc------hhhhccc
Confidence 875 44569999999999999998888 8999999999999999887777 999999999999965 3344558
Q ss_pred cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee-eCCEEEEeeCCCeEEEEEc
Q 038537 176 KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA-IEKLIFSGSEDTTIRVWRR 254 (358)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~ 254 (358)
.+|...|++++..| ++ .+++|+.|.+|++|.-.+ ....+.+|...|..+.. ++..+++++.||.|++|++
T Consensus 137 ~gH~asVWAv~~l~--e~-~~vTgsaDKtIklWk~~~------~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 137 QGHTASVWAVASLP--EN-TYVTGSADKTIKLWKGGT------LLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL 207 (745)
T ss_pred CCcchheeeeeecC--CC-cEEeccCcceeeeccCCc------hhhhhccchhheeeeEEecCCCeEeecCCceEEEEec
Confidence 89999999999987 44 899999999999997643 45568899999988876 4558999999999999999
Q ss_pred CCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 255 AEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
++ +.+.++.+|+.-|.+++..++ +..++|+|+|++++||+..
T Consensus 208 -~g----e~l~~~~ghtn~vYsis~~~~------~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 208 -DG----EVLLEMHGHTNFVYSISMALS------DGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred -cC----ceeeeeeccceEEEEEEecCC------CCeEEEecCCceEEEeecC
Confidence 44 678899999999999997666 6899999999999999976
No 109
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=2.9e-27 Score=179.15 Aligned_cols=271 Identities=15% Similarity=0.239 Sum_probs=203.5
Q ss_pred CEEeeeCCCcEEEEeCCCce----------ee-----eeeeecccceEEEEe---cCCEEEEEeCCceEEEEeccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPDCV----------ER-----GFIKARHGEVRAILA---HDNMLFTTNKDCKIRIWNFTVSDNF 62 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~----------~~-----~~~~~h~~~v~~i~~---~~~~l~s~~~dg~i~iw~~~~~~~~ 62 (358)
|+++|+.||.|.+||+++.. .. ..-.+|.-.|..+.| |...+.+++.|.+++|||.++.+..
T Consensus 58 ymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a 137 (397)
T KOG4283|consen 58 YMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA 137 (397)
T ss_pred EEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceee
Confidence 58999999999999987532 01 112356667777755 6789999999999999999987665
Q ss_pred ccccccccCCCceeeeecCCCccccCCCceEEEEEeCC---CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEE
Q 038537 63 RTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA---EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI 139 (358)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 139 (358)
..+. .++.|..-+++|- ..++++|..|-.|++-|+..+. ..+.+.+|.+.|.++
T Consensus 138 ~~F~---------------------me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs--~sH~LsGHr~~vlaV 194 (397)
T KOG4283|consen 138 VDFK---------------------MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS--FSHTLSGHRDGVLAV 194 (397)
T ss_pred EEee---------------------cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc--ceeeeccccCceEEE
Confidence 4332 3344666667662 3478899999999999999998 889999999999999
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEEceecCC-----------cceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEE
Q 038537 140 VVNQDDG-FVFTCSSDGSVKIWRRVYREN-----------SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINF 207 (358)
Q Consensus 140 ~~~~~~~-~l~~~~~dg~i~~wd~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 207 (358)
.|+|... .|++|+.||.|++||++.... .......-..|.+.+..++|.. ++.++++++.|..+++
T Consensus 195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS--d~~~l~~~gtd~r~r~ 272 (397)
T KOG4283|consen 195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS--DARYLASCGTDDRIRV 272 (397)
T ss_pred EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc--cchhhhhccCccceEE
Confidence 9999776 567899999999999975411 1111223456889999999998 9999999999999999
Q ss_pred EEccCCcCCccccceeecccceeEEE---eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccc
Q 038537 208 WEKDKMSGGFNHGGFLQGHCFAVLCL---VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEME 284 (358)
Q Consensus 208 ~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~ 284 (358)
|+..++................-..+ +.+...++---.++.+.++++..+ ..+..+..|-..|.+..+.|+
T Consensus 273 wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sg----s~ir~l~~h~k~i~c~~~~~~-- 346 (397)
T KOG4283|consen 273 WNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEG----SFVRRLSTHLKRINCAAYRPD-- 346 (397)
T ss_pred eecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCc----eEEEeeecccceeeEEeecCc--
Confidence 99988654433322111111110111 223334444445588999999998 678889999999999999998
Q ss_pred eeeeCeEEEEccCCCcEEEEEe
Q 038537 285 KVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 285 ~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
-+.+.+|+.|+.+..|-.
T Consensus 347 ----fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 347 ----FEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred ----hhhhhccccCCccccccc
Confidence 568899999999999987
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.4e-27 Score=189.93 Aligned_cols=269 Identities=22% Similarity=0.350 Sum_probs=208.0
Q ss_pred CCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCc
Q 038537 7 SSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNT 84 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
....|.+|.+...........-.++|.|+.. +|.+|+.|+..|.|++|.+.++..+. .
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~--------------------v 118 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN--------------------V 118 (476)
T ss_pred cCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHH--------------------H
Confidence 3457888988766655555556788999965 46677777799999999999998764 3
Q ss_pred cccCCCceEEEEEeCCCCEEEEEecCCeEEEEEcc-------CCcccccccccccccCeEEEEEcCC--CCEEEEEeCCC
Q 038537 85 QQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVL-------DKRCTCVDSFVAHESNVNAIVVNQD--DGFVFTCSSDG 155 (358)
Q Consensus 85 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg 155 (358)
+.+|-..|+|+.|+.|+.+|++|+.||.|.+|.+. +....+.+.+..|.-+|+++...+. ...+++++.|.
T Consensus 119 ~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 119 LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR 198 (476)
T ss_pred HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence 46899999999999999999999999999999873 2234477888899999999998764 46899999999
Q ss_pred cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcC------------Ccccccee
Q 038537 156 SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSG------------GFNHGGFL 223 (358)
Q Consensus 156 ~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------~~~~~~~~ 223 (358)
++++||+..+.....+. ....+.+++++| .+..+++|+.+|.|.+.++..... .......+
T Consensus 199 t~k~wdlS~g~LLlti~-----fp~si~av~lDp--ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~ 271 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTIT-----FPSSIKAVALDP--AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL 271 (476)
T ss_pred eEEEEEeccceeeEEEe-----cCCcceeEEEcc--cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee
Confidence 99999997665443333 367899999999 889999999999999998876441 11222345
Q ss_pred ecccc--eeEEE--eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCC
Q 038537 224 QGHCF--AVLCL--VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQ 299 (358)
Q Consensus 224 ~~~~~--~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg 299 (358)
.+|.. .|+|+ +.||.+|++|+.||.|+|||+.+. ++++++..-.++|+.+.+.|-.+ + .+..-+..-
T Consensus 272 ~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~----Q~iRtl~~~kgpVtnL~i~~~~~----~-~~l~~~~~p 342 (476)
T KOG0646|consen 272 VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK----QCIRTLQTSKGPVTNLQINPLER----G-IILFEHKQP 342 (476)
T ss_pred ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH----HHHHHHhhhccccceeEeecccc----c-eecccccCc
Confidence 56766 66555 568999999999999999999998 56777765788999999977533 2 233334455
Q ss_pred cEEEEEeeeCCC
Q 038537 300 TFKVWRVKVMPD 311 (358)
Q Consensus 300 ~v~iw~~~~~~~ 311 (358)
.+-.|++..+..
T Consensus 343 s~~~~~lkr~i~ 354 (476)
T KOG0646|consen 343 SLPNPHLKRMIP 354 (476)
T ss_pred cCCchHhhccCC
Confidence 666777665443
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5e-28 Score=205.09 Aligned_cols=229 Identities=16% Similarity=0.218 Sum_probs=186.7
Q ss_pred CEEeeeCCCcEEEEeCCC---ceeeeeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 1 MVFTGSSSTRIRVWRQPD---CVERGFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~---~~~~~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
+|||++..|.|.+||+.. .+.+..+..|...+.++.|+ +++|++||.||+|++||++..+...
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~----------- 170 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS----------- 170 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc-----------
Confidence 589999999999999976 66777899999999999884 7899999999999999998765442
Q ss_pred eeeeecCCCccccCCCceEEEEEeC-CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYH-AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS 153 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 153 (358)
++.+....|..+.|+| .+..++++...|.+++||++... .+...+.+|.++|.|+.|+|++.+||+|+.
T Consensus 171 ---------t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-r~~~k~~AH~GpV~c~nwhPnr~~lATGGR 240 (839)
T KOG0269|consen 171 ---------TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-RCEKKLTAHNGPVLCLNWHPNREWLATGGR 240 (839)
T ss_pred ---------cccccchhhhceeeccCCCceEEEecCCceEEEeeccCch-hHHHHhhcccCceEEEeecCCCceeeecCC
Confidence 3356778899999998 56789999999999999998765 367788899999999999999999999999
Q ss_pred CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec--CCcEEEEEccCCcCCccccceeecccceeE
Q 038537 154 DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS--DGSINFWEKDKMSGGFNHGGFLQGHCFAVL 231 (358)
Q Consensus 154 dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 231 (358)
|+.|+|||....+....... ....++..++|-|. ...+|++++. |-.|+|||++.+ +.....+..|...+.
T Consensus 241 DK~vkiWd~t~~~~~~~~tI---nTiapv~rVkWRP~-~~~hLAtcsmv~dtsV~VWDvrRP---YIP~~t~~eH~~~vt 313 (839)
T KOG0269|consen 241 DKMVKIWDMTDSRAKPKHTI---NTIAPVGRVKWRPA-RSYHLATCSMVVDTSVHVWDVRRP---YIPYATFLEHTDSVT 313 (839)
T ss_pred CccEEEEeccCCCccceeEE---eecceeeeeeeccC-ccchhhhhhccccceEEEEeeccc---cccceeeeccCcccc
Confidence 99999999976544333322 13578999999993 4467777765 788999999973 444455778888888
Q ss_pred EEeeeC---CEEEEeeCCCeEEEEEcCCC
Q 038537 232 CLVAIE---KLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 232 ~~~~~~---~~l~~~~~dg~i~iwd~~~~ 257 (358)
.+.+++ ..+.+++.||.|..-.+++.
T Consensus 314 ~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 314 GIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred ceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 877754 67889999998876655544
No 112
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.5e-27 Score=181.46 Aligned_cols=251 Identities=19% Similarity=0.258 Sum_probs=211.0
Q ss_pred ceeeeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEE
Q 038537 19 CVERGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMA 96 (358)
Q Consensus 19 ~~~~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 96 (358)
.+.++.+.+|...|+.++.+ ...+.+++.|.+.+||.++++.++. ++.+|.+.|++++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~--------------------~Y~GH~GSVNsik 197 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLA--------------------TYTGHTGSVNSIK 197 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecccccee--------------------eecccccceeeEE
Confidence 34567788999999999875 3488899999999999999998864 4479999999999
Q ss_pred EeCCCCEEEEEecCCeEEEEEc------cCC-------------------------------c-ccccccccccccCeEE
Q 038537 97 FYHAEGLLYTGSFDKTVKAWRV------LDK-------------------------------R-CTCVDSFVAHESNVNA 138 (358)
Q Consensus 97 ~~~~~~~l~~~~~dg~i~iwd~------~~~-------------------------------~-~~~~~~~~~~~~~v~~ 138 (358)
|++.+.++++++.|++..||.. ... . ..++..+.+|.+.|.+
T Consensus 198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a 277 (481)
T KOG0300|consen 198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA 277 (481)
T ss_pred eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence 9999999999999999999962 100 0 1244556789999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcc
Q 038537 139 IVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFN 218 (358)
Q Consensus 139 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 218 (358)
..|...++.+++++.|.+..+||+++++ +...+.+|....+.++-+| ...++++++.|.+.++||++.. ..
T Consensus 278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge----~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFRea---I~ 348 (481)
T KOG0300|consen 278 CDWLAGGQQMVTASWDRTANLWDVETGE----VVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREA---IQ 348 (481)
T ss_pred hhhhcCcceeeeeeccccceeeeeccCc----eeccccCcchhccccccCC--cceEEEEeccCceeEeccchhh---cc
Confidence 9999999999999999999999996665 5566778999999999998 8999999999999999999852 34
Q ss_pred ccceeecccceeEEEeee-CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccC
Q 038537 219 HGGFLQGHCFAVLCLVAI-EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSL 297 (358)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~ 297 (358)
....+.+|...+++..+. +..+++|+.|.+|++||+++.. .++.++. ...+++.++.+.. +..++.--+
T Consensus 349 sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMR---splATIR-tdS~~NRvavs~g------~~iIAiPhD 418 (481)
T KOG0300|consen 349 SVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMR---SPLATIR-TDSPANRVAVSKG------HPIIAIPHD 418 (481)
T ss_pred eeeeecccccceeEEEEecCCceeecCCCceEEEeeecccc---Ccceeee-cCCccceeEeecC------CceEEeccC
Confidence 455689999999998885 6889999999999999999874 5666664 3568899999987 568888888
Q ss_pred CCcEEEEEeee
Q 038537 298 DQTFKVWRVKV 308 (358)
Q Consensus 298 dg~v~iw~~~~ 308 (358)
+..|++||+.-
T Consensus 419 NRqvRlfDlnG 429 (481)
T KOG0300|consen 419 NRQVRLFDLNG 429 (481)
T ss_pred CceEEEEecCC
Confidence 88999999974
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.3e-26 Score=184.22 Aligned_cols=251 Identities=14% Similarity=0.211 Sum_probs=200.8
Q ss_pred ceEEEEecC--CEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe
Q 038537 31 EVRAILAHD--NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS 108 (358)
Q Consensus 31 ~v~~i~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 108 (358)
.+.++...+ +.+++|+.|..+.++|...++.+. ++.||...|+.+.++|+...+++++
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~--------------------~~~Gh~kki~~v~~~~~~~~v~~aS 280 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA--------------------TLKGHTKKITSVKFHKDLDTVITAS 280 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecchhhhhh--------------------hccCcceEEEEEEeccchhheeecC
Confidence 466665543 799999999999999998877653 5579999999999999999999999
Q ss_pred cCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEe
Q 038537 109 FDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALS 188 (358)
Q Consensus 109 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 188 (358)
.|..|+||...... .......|..+|+.+..+|.|.||++++.||...+.|++++........ +...-.+++.+|+
T Consensus 281 ad~~i~vws~~~~s--~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~--~~s~v~~ts~~fH 356 (506)
T KOG0289|consen 281 ADEIIRVWSVPLSS--EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD--ETSDVEYTSAAFH 356 (506)
T ss_pred CcceEEeecccccc--CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee--ccccceeEEeeEc
Confidence 99999999998776 5667778999999999999999999999999999999987654332221 1234568999999
Q ss_pred ecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee--eCCEEEEeeCCCeEEEEEcCCCceeeeeeee
Q 038537 189 SFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA--IEKLIFSGSEDTTIRVWRRAEGGCYHECLAV 266 (358)
Q Consensus 189 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 266 (358)
| ||.+|.+|..||.+++||+.... ....+.+|..+|..+++ +|-+|+++++|+.|++||++..+. ..+
T Consensus 357 p--DgLifgtgt~d~~vkiwdlks~~----~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n----~kt 426 (506)
T KOG0289|consen 357 P--DGLIFGTGTPDGVVKIWDLKSQT----NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN----FKT 426 (506)
T ss_pred C--CceEEeccCCCceEEEEEcCCcc----ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc----cce
Confidence 9 99999999999999999999843 44457889999977766 678999999999999999998742 333
Q ss_pred ecC-cccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCC
Q 038537 267 LDG-HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHS 325 (358)
Q Consensus 267 ~~~-h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 325 (358)
+.- ...+|.++.|.+. |.+|+.+|.|=.|++++-.. ..-.++..+..|.
T Consensus 427 ~~l~~~~~v~s~~fD~S------Gt~L~~~g~~l~Vy~~~k~~----k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 427 IQLDEKKEVNSLSFDQS------GTYLGIAGSDLQVYICKKKT----KSWTEIKELADHS 476 (506)
T ss_pred eeccccccceeEEEcCC------CCeEEeecceeEEEEEeccc----ccceeeehhhhcc
Confidence 322 2347999999999 89999998876666655332 2344555555555
No 114
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.2e-26 Score=200.31 Aligned_cols=252 Identities=20% Similarity=0.192 Sum_probs=205.3
Q ss_pred CEEeeeCCCcEEEEeCCCc-eeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 1 MVFTGSSSTRIRVWRQPDC-VERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~-~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
+|++++.||.|++|+.... +....+..+...|.+++...++|++|+.+++|.+|.+..++...
T Consensus 27 fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~---------------- 90 (933)
T KOG1274|consen 27 FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT---------------- 90 (933)
T ss_pred EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc----------------
Confidence 4789999999999997655 44455555889999999999999999999999999998775432
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
.+...+-++++++++.+|.+++.|+.|-.|++.++.+.. ....+.+|.++|.++.|+|++++|++.+.||.|++
T Consensus 91 ----iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s--~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 91 ----ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS--QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred ----eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc--hheeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 223445679999999999999999999999999999887 77888999999999999999999999999999999
Q ss_pred EEceecCCcceeeeeecc---c-CCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee
Q 038537 160 WRRVYRENSHTLTMTLKF---Q-QSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA 235 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~---~-~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (358)
||+.++.....+....+. . ...+..++|+| ++..++....|+.|++|+.......+.+..........++.++|
T Consensus 165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P--k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHP--KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP 242 (933)
T ss_pred EEcccchhhhhcccCCccccccccceeeeeeecC--CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence 999877655444332221 1 45677889998 88889999999999999998866555554444444466788899
Q ss_pred eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccc
Q 038537 236 IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEME 284 (358)
Q Consensus 236 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~ 284 (358)
+|.|||+++.||.|.|||..+-+ . ......|.+++|.|+.+
T Consensus 243 nG~YiAAs~~~g~I~vWnv~t~~----~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNVDTHE----R----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred CCcEEeeeccCCcEEEEecccch----h----ccccceeEEEecCCCCC
Confidence 99999999999999999998732 1 22346799999999844
No 115
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=7.3e-27 Score=174.49 Aligned_cols=220 Identities=16% Similarity=0.186 Sum_probs=181.9
Q ss_pred ccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEce
Q 038537 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRV 163 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 163 (358)
.+++|+.+++.+.++.+|.+|++++.|.+..+|-..+++ .+-++.+|.+.|.|+..+-+...+++|+.|.++++||+.
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe--rlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE--RLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc--eeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 458999999999999999999999999999999988888 899999999999999999999999999999999999998
Q ss_pred ecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-----CCcEEEEEccCCcCC---ccccceeecccc--eeEEE
Q 038537 164 YRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-----DGSINFWEKDKMSGG---FNHGGFLQGHCF--AVLCL 233 (358)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~---~~~~~~~~~~~~--~~~~~ 233 (358)
+++...... ...+|..+.|++ ++++++.+.. .+.|.++|++..... ..+...+..+.. ...-+
T Consensus 83 tGk~la~~k-----~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~W 155 (327)
T KOG0643|consen 83 TGKQLATWK-----TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALW 155 (327)
T ss_pred CCcEEEEee-----cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeee
Confidence 887655554 378899999998 8887777654 467999999863311 111112222333 33455
Q ss_pred eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCc
Q 038537 234 VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQE 313 (358)
Q Consensus 234 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~ 313 (358)
.+.+++|++|.+||.|.+||+++++ +.+.....|...|+.|+++++ ..+++++|.|.+-++||++.+....
T Consensus 156 g~l~~~ii~Ghe~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d------~T~FiT~s~Dttakl~D~~tl~v~K 226 (327)
T KOG0643|consen 156 GPLGETIIAGHEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRD------RTYFITGSKDTTAKLVDVRTLEVLK 226 (327)
T ss_pred cccCCEEEEecCCCcEEEEEcccCc---eeeechhhhccccccccccCC------cceEEecccCccceeeeccceeeEE
Confidence 6779999999999999999999985 667777889999999999999 8899999999999999999876665
Q ss_pred ceeecccc
Q 038537 314 KTMCLDYS 321 (358)
Q Consensus 314 ~~~~~~~~ 321 (358)
+..+....
T Consensus 227 ty~te~Pv 234 (327)
T KOG0643|consen 227 TYTTERPV 234 (327)
T ss_pred Eeeecccc
Confidence 55554443
No 116
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=6.3e-27 Score=205.69 Aligned_cols=287 Identities=20% Similarity=0.258 Sum_probs=206.3
Q ss_pred ccceEEE--EecCCEEEEEe--CCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEE
Q 038537 29 HGEVRAI--LAHDNMLFTTN--KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLL 104 (358)
Q Consensus 29 ~~~v~~i--~~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 104 (358)
...|.++ .+++..++||+ .||.++||+.+.-...........+ ....++..|.+.|+|+.|+|||++|
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~--------k~l~~m~~h~~sv~CVR~S~dG~~l 84 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLP--------KHLCTMDDHDGSVNCVRFSPDGSYL 84 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccc--------hhheeeccccCceeEEEECCCCCeE
Confidence 3445555 45788999999 8999999997632211000000011 1113457899999999999999999
Q ss_pred EEEecCCeEEEEEccC----------------CcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCc
Q 038537 105 YTGSFDKTVKAWRVLD----------------KRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENS 168 (358)
Q Consensus 105 ~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 168 (358)
|+|++|+.|.||.... ..+.....+.+|+..|..++|+|++.++++++.|++|.+||.++.
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--- 161 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF--- 161 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc---
Confidence 9999999999999872 113456677899999999999999999999999999999998544
Q ss_pred ceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceee----cccceeEEEeeeCCEEEEee
Q 038537 169 HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ----GHCFAVLCLVAIEKLIFSGS 244 (358)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~ 244 (358)
.....+++|.+.|..+.|.| -|++|++-+.|++|++|++.+-.........+. ..-..-.+++|+|.+|++.-
T Consensus 162 -~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 162 -ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred -eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 45677889999999999999 999999999999999999665211111111111 11122367789999999864
Q ss_pred ----CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeC-----------eEEEEccCCCcEEEEEeeeC
Q 038537 245 ----EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMG-----------FLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 245 ----~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~-----------~~l~s~~~dg~v~iw~~~~~ 309 (358)
.-..+.|.+-.+- +.-..+-||.+++.+++|+|.--..... ..+|+||.|++|.||.....
T Consensus 239 A~n~~~~~~~IieR~tW----k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTW----KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred hccCCcceeEEEecCCc----eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 2345777777554 5567788999999999999841111101 27899999999999987532
Q ss_pred CCCcceeecccccCCCCccceeeecccCCCcccccccchhhh
Q 038537 310 PDQEKTMCLDYSDYHSNSKTTTTKMDYEMSPVLSPSWVEKKM 351 (358)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~W~~~~~ 351 (358)
+......+.....|..++|+++..
T Consensus 315 ------------------RPl~vi~~lf~~SI~DmsWspdG~ 338 (942)
T KOG0973|consen 315 ------------------RPLFVIHNLFNKSIVDMSWSPDGF 338 (942)
T ss_pred ------------------CchhhhhhhhcCceeeeeEcCCCC
Confidence 112333344555678888887654
No 117
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.6e-28 Score=203.38 Aligned_cols=236 Identities=19% Similarity=0.248 Sum_probs=187.0
Q ss_pred cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC-CCEEEEEecCCeEEEE
Q 038537 38 HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA-EGLLYTGSFDKTVKAW 116 (358)
Q Consensus 38 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~iw 116 (358)
+.++|||++..|.|.+||+.... +...+ ..+..|...++++.|++. ..+|++|+.||+|++|
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~--rnk~l---------------~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~ 161 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSI--RNKLL---------------TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCW 161 (839)
T ss_pred hhhhheeecCCCcEEEEecCccc--cchhh---------------hHhhhhccceeeeeeccCCccEEEecCCCceEEEE
Confidence 57899999999999999998631 11111 134789999999999984 5689999999999999
Q ss_pred EccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcE
Q 038537 117 RVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYF 195 (358)
Q Consensus 117 d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 195 (358)
|++..+ ...++.+....|..+.|+| .+..|+++...|.+.+||++.. ......+.+|.++|.++.|+| ++.+
T Consensus 162 DlR~~~--S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp---~r~~~k~~AH~GpV~c~nwhP--nr~~ 234 (839)
T KOG0269|consen 162 DLRSKK--SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQP---DRCEKKLTAHNGPVLCLNWHP--NREW 234 (839)
T ss_pred eeeccc--ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCc---hhHHHHhhcccCceEEEeecC--CCce
Confidence 999887 6777778889999999999 6789999999999999999743 345567788999999999999 9999
Q ss_pred EEEeecCCcEEEEEccCCcCCccccceeecccceeE--EEeee-CCEEEEee--CCCeEEEEEcCCCceeeeeeeeecCc
Q 038537 196 LYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL--CLVAI-EKLIFSGS--EDTTIRVWRRAEGGCYHECLAVLDGH 270 (358)
Q Consensus 196 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h 270 (358)
||+|+.|+.|+|||+.+....... .-....++. .+-|. ...|++++ .|-.|+|||++..- -+..++..|
T Consensus 235 lATGGRDK~vkiWd~t~~~~~~~~---tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY---IP~~t~~eH 308 (839)
T KOG0269|consen 235 LATGGRDKMVKIWDMTDSRAKPKH---TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY---IPYATFLEH 308 (839)
T ss_pred eeecCCCccEEEEeccCCCcccee---EEeecceeeeeeeccCccchhhhhhccccceEEEEeecccc---ccceeeecc
Confidence 999999999999999863221111 111223333 34443 35677665 67889999999874 467788899
Q ss_pred ccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 271 RGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 271 ~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
...++.++|.... ...|.+++.||+|..-.+++
T Consensus 309 ~~~vt~i~W~~~d-----~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 309 TDSVTGIAWDSGD-----RINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred CccccceeccCCC-----ceeeEeecCccHHHHhhhhc
Confidence 9999999998732 46899999999998776665
No 118
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=2.3e-25 Score=180.45 Aligned_cols=284 Identities=20% Similarity=0.248 Sum_probs=203.3
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe-cCCEEEEEeCCceEEEEecccccccccccccccC--------C
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA-HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLP--------R 72 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~--------~ 72 (358)
++||.++|.|.||+..+.+..+....|.+.|.++.. .+..|++|+.|..|..||-+ -+.++...++... .
T Consensus 260 viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~ 338 (626)
T KOG2106|consen 260 VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEG 338 (626)
T ss_pred EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEecccc-ccccccccCchhcCCeeEEecC
Confidence 689999999999999998888888899999999976 45567779999999999932 2222222221110 1
Q ss_pred Cceeee-------------ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEE
Q 038537 73 RSSFLS-------------FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI 139 (358)
Q Consensus 73 ~~~~~~-------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 139 (358)
...++. -.-.....+|.+..+.++.+|+..++++++.|+.+++|+ ..+ .+-+ ..-..++.|+
T Consensus 339 ~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k--~~wt-~~~~d~~~~~ 413 (626)
T KOG2106|consen 339 KGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK--LEWT-KIIEDPAECA 413 (626)
T ss_pred CCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc--eeEE-EEecCceeEe
Confidence 111110 011124568999999999999999999999999999999 333 2222 2246789999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccc
Q 038537 140 VVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH 219 (358)
Q Consensus 140 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 219 (358)
.|+|.+ .++.|+..|...+.|.++. .+..... .+.++++++|+| +|.+||.|+.|+.|++|.+.........
T Consensus 414 ~fhpsg-~va~Gt~~G~w~V~d~e~~----~lv~~~~-d~~~ls~v~ysp--~G~~lAvgs~d~~iyiy~Vs~~g~~y~r 485 (626)
T KOG2106|consen 414 DFHPSG-VVAVGTATGRWFVLDTETQ----DLVTIHT-DNEQLSVVRYSP--DGAFLAVGSHDNHIYIYRVSANGRKYSR 485 (626)
T ss_pred eccCcc-eEEEeeccceEEEEecccc----eeEEEEe-cCCceEEEEEcC--CCCEEEEecCCCeEEEEEECCCCcEEEE
Confidence 999999 9999999999999998653 2333223 388999999999 9999999999999999998875544444
Q ss_pred cceeecccceeEEEeeeCCEEEEeeCCCeEEEEE----------------------------------------------
Q 038537 220 GGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWR---------------------------------------------- 253 (358)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd---------------------------------------------- 253 (358)
.....+....-+.+++|++++.+-+.|-.|..|.
T Consensus 486 ~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~ 565 (626)
T KOG2106|consen 486 VGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKL 565 (626)
T ss_pred eeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhh
Confidence 3333342222233344556666666666666663
Q ss_pred --------------cCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 254 --------------RAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 254 --------------~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
..-.+ ...+...+.+|..-|++++|..+ ...|++.+.|.+|..|++
T Consensus 566 lA~gdd~g~v~lf~yPc~s-~rA~~he~~ghs~~vt~V~Fl~~------d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 566 LASGDDFGKVHLFSYPCSS-PRAPSHEYGGHSSHVTNVAFLCK------DSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhccccCceEEEEccccCC-CcccceeeccccceeEEEEEeeC------CceEEecCCCceEEEEEe
Confidence 22111 12344566789999999999988 678888889999999987
No 119
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.2e-24 Score=159.05 Aligned_cols=277 Identities=17% Similarity=0.189 Sum_probs=209.0
Q ss_pred CEEeeeCCCcEEEEeCCCc-----------e----eeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPDC-----------V----ERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFR 63 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~-----------~----~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~ 63 (358)
+.++|+...+.||--...- + .-+.-+.|.+.|.|.+| +|.++++|+.|.+|++..++...+..
T Consensus 46 lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~ 125 (350)
T KOG0641|consen 46 LYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA 125 (350)
T ss_pred eEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccc
Confidence 3578888888888653210 0 11223568899999877 58899999999999998776544322
Q ss_pred cccccccCCCceeeeecCCCccccCCCceEEEEEeCC----CCEEEEEe-cCCeEEEEEccCCcccccccccccccCeEE
Q 038537 64 TKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA----EGLLYTGS-FDKTVKAWRVLDKRCTCVDSFVAHESNVNA 138 (358)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 138 (358)
.-. ...+.-|.+.|..++|..+ +..|++++ .|..|.+-|...++ ..+.+.+|++.|.+
T Consensus 126 ~g~---------------dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~--~~~a~sghtghila 188 (350)
T KOG0641|consen 126 TGH---------------DLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ--GFHALSGHTGHILA 188 (350)
T ss_pred cCc---------------ceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC--cceeecCCcccEEE
Confidence 111 1134679999999999643 44666654 46677777777777 88899999999988
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecc---cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcC
Q 038537 139 IVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKF---QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSG 215 (358)
Q Consensus 139 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 215 (358)
+- +-++-++++|+.|.+|++||++-......+-..+.. ..+.|.++++.| .|++|++|..|....+||++.
T Consensus 189 ly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp--sgrll~sg~~dssc~lydirg--- 262 (350)
T KOG0641|consen 189 LY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP--SGRLLASGHADSSCMLYDIRG--- 262 (350)
T ss_pred EE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC--CcceeeeccCCCceEEEEeeC---
Confidence 73 336889999999999999999866544444333322 236789999998 999999999999999999998
Q ss_pred CccccceeecccceeEEE--eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEE
Q 038537 216 GFNHGGFLQGHCFAVLCL--VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVY 293 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~ 293 (358)
....+.+..|...+.|+ +|...++++++.|..|++-|+...-...-++.....|...+..+.|+|. .--++
T Consensus 263 -~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~------d~sfi 335 (350)
T KOG0641|consen 263 -GRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ------DFSFI 335 (350)
T ss_pred -CceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc------cceee
Confidence 34555577787777665 5667899999999999999998653222345666789999999999999 67889
Q ss_pred EccCCCcEEEEEee
Q 038537 294 SSSLDQTFKVWRVK 307 (358)
Q Consensus 294 s~~~dg~v~iw~~~ 307 (358)
+.+.|.++.+|-+.
T Consensus 336 sssadkt~tlwa~~ 349 (350)
T KOG0641|consen 336 SSSADKTATLWALN 349 (350)
T ss_pred eccCcceEEEeccC
Confidence 99999999999764
No 120
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=4.4e-27 Score=179.46 Aligned_cols=210 Identities=19% Similarity=0.307 Sum_probs=170.6
Q ss_pred ccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccC----------------CcccccccccccccCeEEEEEcCCCCE
Q 038537 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLD----------------KRCTCVDSFVAHESNVNAIVVNQDDGF 147 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 147 (358)
.+..|..++.+.+|+|||.++++|+.|..|+|.|++. ...+.++++..|..+|+++.|+|....
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 4568999999999999999999999999999999861 112456778889999999999999999
Q ss_pred EEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccc
Q 038537 148 VFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC 227 (358)
Q Consensus 148 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 227 (358)
|++|+.|++|++||.........+.. -....+|.++.|+| .|.+|++|.....+++||+++-+.- ........|.
T Consensus 187 LiS~srD~tvKlFDfsK~saKrA~K~--~qd~~~vrsiSfHP--sGefllvgTdHp~~rlYdv~T~Qcf-vsanPd~qht 261 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAKRAFKV--FQDTEPVRSISFHP--SGEFLLVGTDHPTLRLYDVNTYQCF-VSANPDDQHT 261 (430)
T ss_pred EEeccCCCeEEEEecccHHHHHHHHH--hhccceeeeEeecC--CCceEEEecCCCceeEEeccceeEe-eecCcccccc
Confidence 99999999999999854332221111 11356899999999 9999999999999999999984322 2222355778
Q ss_pred ceeEEEe--eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeec-Ccc-cceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 228 FAVLCLV--AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLD-GHR-GPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 228 ~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~h~-~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
..|+++. +.+++.++|+.||.|++||--++ +++.++. .|. ..|.+..|..+ ++++++.|.|..+++
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~----rCv~t~~~AH~gsevcSa~Ftkn------~kyiLsSG~DS~vkL 331 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSN----RCVRTIGNAHGGSEVCSAVFTKN------GKYILSSGKDSTVKL 331 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccH----HHHHHHHhhcCCceeeeEEEccC------CeEEeecCCcceeee
Confidence 8887775 46899999999999999999888 4555554 454 47899999999 899999999999999
Q ss_pred EEeee
Q 038537 304 WRVKV 308 (358)
Q Consensus 304 w~~~~ 308 (358)
|++.+
T Consensus 332 WEi~t 336 (430)
T KOG0640|consen 332 WEIST 336 (430)
T ss_pred eeecC
Confidence 99985
No 121
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.4e-26 Score=173.70 Aligned_cols=268 Identities=19% Similarity=0.258 Sum_probs=188.8
Q ss_pred eeeeeecccceEEEEe--cCCEEEEEeCCceEEEEeccccccccc--c----------cccccCCCceee-eecC-----
Q 038537 22 RGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRT--K----------KVTTLPRRSSFL-SFSK----- 81 (358)
Q Consensus 22 ~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~--~----------~~~~~~~~~~~~-~~~~----- 81 (358)
+..+++|.+.|++++| +|++|++++.|+.|++|+++.-..... . .+...|....++ ....
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3567899999999887 688999999999999999875322110 0 001111111111 0000
Q ss_pred ---------------------CCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEE
Q 038537 82 ---------------------SNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIV 140 (358)
Q Consensus 82 ---------------------~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 140 (358)
......|.-.|..+-...++.+|++++.|..|.+|+++ ++ .+..+......-+..+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq--~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ--LLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc--eeeeecccccccccee
Confidence 01122455566677777788999999999999999998 55 5666655555667788
Q ss_pred EcCCCCEEEEEeCCCcEEEEEceecCCc----ceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcC-
Q 038537 141 VNQDDGFVFTCSSDGSVKIWRRVYRENS----HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSG- 215 (358)
Q Consensus 141 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~- 215 (358)
.+|+|+++++++..--|++|.+-.++.. ......+++|.+.|..++|++ +...+++.+.||++++||+.-.-.
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn--~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN--SSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC--CcceeEEEecCCcEEEeeccceEec
Confidence 9999999999999999999997544321 123456789999999999998 999999999999999999764211
Q ss_pred ---Ccccc---cee--ecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceee
Q 038537 216 ---GFNHG---GFL--QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVV 287 (358)
Q Consensus 216 ---~~~~~---~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~ 287 (358)
+..+. ..+ .+....-+.++|+++.|+.+. ...+.+|..++++. .-..-..|...|.+|+|+++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~---~~~~e~~h~~~Is~is~~~~----- 384 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKD---YPELEDIHSTTISSISYSSD----- 384 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCcc---chhHHHhhcCceeeEEecCC-----
Confidence 11110 001 111222478899999888765 34699999988753 22233469999999999999
Q ss_pred eCeEEEEccCCCcEEEEE
Q 038537 288 MGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 288 ~~~~l~s~~~dg~v~iw~ 305 (358)
|++++|+| |..+++..
T Consensus 385 -g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 385 -GKYIATCG-DRYVRVIR 400 (420)
T ss_pred -CcEEeeec-ceeeeeec
Confidence 89999997 66888864
No 122
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=3.9e-25 Score=189.20 Aligned_cols=194 Identities=20% Similarity=0.272 Sum_probs=161.7
Q ss_pred CceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccc---cccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecC
Q 038537 90 DCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF---VAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRE 166 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 166 (358)
..+++++.++.|++.+.|+..|.|-+|+++++- ....+ ..|..+|+.++...-++.+++++.+|.+.+||.....
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi--~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~ 526 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI--HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV 526 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCe--eecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence 568899999999999999999999999999987 45555 4799999999999989999999999999999985444
Q ss_pred CcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeE--EEeeeCCEEEEee
Q 038537 167 NSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL--CLVAIEKLIFSGS 244 (358)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~ 244 (358)
+...++ -...+.++.++. ....++.+..|-.|+++|..+ .+..+.+.+|...++ +++++|++|++++
T Consensus 527 ----l~~~l~-l~~~~~~iv~hr--~s~l~a~~~ddf~I~vvD~~t----~kvvR~f~gh~nritd~~FS~DgrWlisas 595 (910)
T KOG1539|consen 527 ----LKKSLR-LGSSITGIVYHR--VSDLLAIALDDFSIRVVDVVT----RKVVREFWGHGNRITDMTFSPDGRWLISAS 595 (910)
T ss_pred ----eeeeec-cCCCcceeeeee--hhhhhhhhcCceeEEEEEchh----hhhhHHhhccccceeeeEeCCCCcEEEEee
Confidence 322222 356777888876 778899999999999999988 566667888988885 5567899999999
Q ss_pred CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC-CcEEEEEee
Q 038537 245 EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD-QTFKVWRVK 307 (358)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d-g~v~iw~~~ 307 (358)
.|++|++||+.++ .++-.+ .-..+.+++.|+|+ |++|||...| .-|++|-=.
T Consensus 596 mD~tIr~wDlpt~----~lID~~-~vd~~~~sls~SPn------gD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 596 MDSTIRTWDLPTG----TLIDGL-LVDSPCTSLSFSPN------GDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred cCCcEEEEeccCc----ceeeeE-ecCCcceeeEECCC------CCEEEEEEecCceEEEEEch
Confidence 9999999999998 444444 34678999999999 8999999999 569999643
No 123
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=1.1e-25 Score=188.69 Aligned_cols=325 Identities=21% Similarity=0.278 Sum_probs=236.6
Q ss_pred CEEeeeCCCcEEEEeCC--CceeeeeeeecccceEEEEec-----CCEEEEEeCCceEEEEeccccc----ccccccccc
Q 038537 1 MVFTGSSSTRIRVWRQP--DCVERGFIKARHGEVRAILAH-----DNMLFTTNKDCKIRIWNFTVSD----NFRTKKVTT 69 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~--~~~~~~~~~~h~~~v~~i~~~-----~~~l~s~~~dg~i~iw~~~~~~----~~~~~~~~~ 69 (358)
+++.|+.+..|.++.-. ..+.+..+.||...|.++.|. .-+|+++|.|..||||.+.-.. ..+......
T Consensus 161 lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~ 240 (764)
T KOG1063|consen 161 LLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTT 240 (764)
T ss_pred EEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccccccccc
Confidence 47788899999998755 346678899999999999873 3488999999999999986443 222222222
Q ss_pred cCCCcee-------eeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCc--------------------
Q 038537 70 LPRRSSF-------LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR-------------------- 122 (358)
Q Consensus 70 ~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------------- 122 (358)
.+....+ +.......+.||.+.|.++.|+|.+..|++++.|.++.+|...+..
T Consensus 241 ~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~ 320 (764)
T KOG1063|consen 241 LSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFW 320 (764)
T ss_pred ccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccccccee
Confidence 2222111 1222334567999999999999999999999999999999654321
Q ss_pred ------------------------------ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceee
Q 038537 123 ------------------------------CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLT 172 (358)
Q Consensus 123 ------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 172 (358)
+.....+.+|.+.|++++|+|.|.++++++.|.+-|+|-.-..+......
T Consensus 321 g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEi 400 (764)
T KOG1063|consen 321 GGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEI 400 (764)
T ss_pred eEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeee
Confidence 11122235788999999999999999999999999999765333334444
Q ss_pred eeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCC--------------------------------cCC----
Q 038537 173 MTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKM--------------------------------SGG---- 216 (358)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------------------------------~~~---- 216 (358)
...+.|...++|+++.+ ....+++|.....+++|+.... +..
T Consensus 401 aRPQiHGyDl~c~~~vn--~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e 478 (764)
T KOG1063|consen 401 ARPQIHGYDLTCLSFVN--EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGE 478 (764)
T ss_pred cccccccccceeeehcc--CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccc
Confidence 55667888999999986 4778999999999999975321 000
Q ss_pred ------------------------------------ccccceeecccceeEEE--eeeCCEEEEeeCC-----CeEEEEE
Q 038537 217 ------------------------------------FNHGGFLQGHCFAVLCL--VAIEKLIFSGSED-----TTIRVWR 253 (358)
Q Consensus 217 ------------------------------------~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~d-----g~i~iwd 253 (358)
+.....+.||...+.++ +|+++++|+++.. ..|++|+
T Consensus 479 ~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~ 558 (764)
T KOG1063|consen 479 TNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWN 558 (764)
T ss_pred cccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEe
Confidence 00012244677666555 5669999998854 4599999
Q ss_pred cCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCCccceeee
Q 038537 254 RAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNSKTTTTK 333 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (358)
..+- .....+.+|.-.|+.|+|+|+ +++|++.|.|.++.+|........+. ....
T Consensus 559 t~~W----~~~~~L~~HsLTVT~l~FSpd------g~~LLsvsRDRt~sl~~~~~~~~~e~---------------~fa~ 613 (764)
T KOG1063|consen 559 TANW----LQVQELEGHSLTVTRLAFSPD------GRYLLSVSRDRTVSLYEVQEDIKDEF---------------RFAC 613 (764)
T ss_pred ccch----hhhheecccceEEEEEEECCC------CcEEEEeecCceEEeeeeecccchhh---------------hhcc
Confidence 9886 556688999999999999999 99999999999999999864322111 1223
Q ss_pred cccCCCcccccccchhhhh
Q 038537 334 MDYEMSPVLSPSWVEKKMK 352 (358)
Q Consensus 334 ~~~~~~~v~s~~W~~~~~~ 352 (358)
...|...|...+|++..++
T Consensus 614 ~k~HtRIIWdcsW~pde~~ 632 (764)
T KOG1063|consen 614 LKAHTRIIWDCSWSPDEKY 632 (764)
T ss_pred ccccceEEEEcccCcccce
Confidence 5567777888999888764
No 124
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1e-25 Score=173.99 Aligned_cols=279 Identities=14% Similarity=0.174 Sum_probs=201.5
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe----cCCEEEEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA----HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~----~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
+|++.+.|.|++||..+++.+..++++...++.+.| .+..+.+|+.||+|++||++..........
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~---------- 112 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW---------- 112 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec----------
Confidence 789999999999999999999999999998888876 356899999999999999997765443322
Q ss_pred eecCCCccccCC-CceEEEEEeCCCCEEEEEe----cCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEE
Q 038537 78 SFSKSNTQQQHR-DCVSCMAFYHAEGLLYTGS----FDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTC 151 (358)
Q Consensus 78 ~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 151 (358)
.++. .+..|++....++.+++|+ .+-.|.+||++..+...-.-...|...|++++|+| +.++|++|
T Consensus 113 --------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSG 184 (376)
T KOG1188|consen 113 --------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSG 184 (376)
T ss_pred --------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEee
Confidence 2333 5677888776778888874 36789999999877333334567999999999999 67899999
Q ss_pred eCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccccee--------
Q 038537 152 SSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFL-------- 223 (358)
Q Consensus 152 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-------- 223 (358)
+.||.|.+||+........+. ..-.+...|..+.|.. +..+.|.+-+......+|+++.+..........
T Consensus 185 SvDGLvnlfD~~~d~EeDaL~-~viN~~sSI~~igw~~-~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~ 262 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEEDALL-HVINHGSSIHLIGWLS-KKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRK 262 (376)
T ss_pred cccceEEeeecCCCcchhhHH-Hhhcccceeeeeeeec-CCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHh
Confidence 999999999997664333332 2334677899999986 123468888899999999999865433322110
Q ss_pred -ecccceeEEEee-eCCEEEEeeC-CCeEEEEEcC---CCceeeeeeeeecC-cccceEEEEeecccceeeeCeEEEEcc
Q 038537 224 -QGHCFAVLCLVA-IEKLIFSGSE-DTTIRVWRRA---EGGCYHECLAVLDG-HRGPVRCLAASLEMEKVVMGFLVYSSS 296 (358)
Q Consensus 224 -~~~~~~~~~~~~-~~~~l~~~~~-dg~i~iwd~~---~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~~~~~l~s~~ 296 (358)
.....-|-+.+| +....+.++. -+...++-+. ++.. ...+..+.+ |..-|+++.|... +.++.|||
T Consensus 263 ~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~-~~~~a~l~g~~~eiVR~i~~~~~------~~~l~TGG 335 (376)
T KOG1188|consen 263 EDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSL-LTEPAILQGGHEEIVRDILFDVK------NDVLYTGG 335 (376)
T ss_pred hhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccc-cCccccccCCcHHHHHHHhhhcc------cceeeccC
Confidence 011122333434 3345554444 5556655444 2222 234555655 7778899999877 78999999
Q ss_pred CCCcEEEEEee
Q 038537 297 LDQTFKVWRVK 307 (358)
Q Consensus 297 ~dg~v~iw~~~ 307 (358)
+||.+.+|..+
T Consensus 336 EDG~l~~Wk~~ 346 (376)
T KOG1188|consen 336 EDGLLQAWKVE 346 (376)
T ss_pred CCceEEEEecC
Confidence 99999999974
No 125
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6e-25 Score=167.50 Aligned_cols=261 Identities=21% Similarity=0.277 Sum_probs=191.9
Q ss_pred ccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccC--CcccccccccccccCeEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 038537 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLD--KRCTCVDSFVAHESNVNAIVVNQ--DDGFVFTCSSDGSVKIWR 161 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd 161 (358)
.+|.+-|+|+.|.+.|+.+++|+.|++|+|||.+. +.+.+....+.|.+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 57899999999999999999999999999999643 45567777889999999999976 689999999999999997
Q ss_pred ce-----ecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCC--ccccc-------eeeccc
Q 038537 162 RV-----YRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGG--FNHGG-------FLQGHC 227 (358)
Q Consensus 162 ~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~-------~~~~~~ 227 (358)
=. ...........+....+.|+.+.|.|..-|-.|++++.||.++||+.-..... ..+.. ....+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 42 11123344556667789999999999888999999999999999987653211 11111 122344
Q ss_pred ceeEEEeee-----CCEEEEeeCC-----CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccC
Q 038537 228 FAVLCLVAI-----EKLIFSGSED-----TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSL 297 (358)
Q Consensus 228 ~~~~~~~~~-----~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~ 297 (358)
.+..|++++ ..+|+.|+.+ +.++||...........+.++.+|..+|++|+|.|+..+. -.+||+++.
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~--y~~lAvA~k 247 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRS--YHLLAVATK 247 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCc--eeeEEEeec
Confidence 555666654 4688888766 5799998877655456778888999999999999985433 258999999
Q ss_pred CCcEEEEEeeeCCCC-cceeecccccCCCCccceeeecccCCCcccccccchh
Q 038537 298 DQTFKVWRVKVMPDQ-EKTMCLDYSDYHSNSKTTTTKMDYEMSPVLSPSWVEK 349 (358)
Q Consensus 298 dg~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~W~~~ 349 (358)
|| |+||++.....+ +....+.......-....+..++-|..+|..+.|+=.
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt 299 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT 299 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence 99 999999853211 1111111111222233445667778888888888643
No 126
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.9e-26 Score=181.44 Aligned_cols=255 Identities=18% Similarity=0.268 Sum_probs=188.3
Q ss_pred CCEEEEEeCCceEEEEecccccccccccccc-cCCCceeeeecCCCccccCCCceEEEEEeCC-CCEEEEEecCCeEEEE
Q 038537 39 DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTT-LPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA-EGLLYTGSFDKTVKAW 116 (358)
Q Consensus 39 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~iw 116 (358)
|+++|.|..|..|.|||++-...+.+..... .........-.+.....+|++.|..++|+.+ .+.||+|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 6799999999999999998554332211111 0000000000122234689999999999864 4589999999999999
Q ss_pred EccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcE
Q 038537 117 RVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYF 195 (358)
Q Consensus 117 d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 195 (358)
|+.+++ +...+..|...|.++.|+| ....|++|+.|++|.+.|+|.......... -.+.|..++|.| .....
T Consensus 272 D~~~g~--p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk----~~g~VEkv~w~~-~se~~ 344 (463)
T KOG0270|consen 272 DVDTGK--PKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK----FDGEVEKVAWDP-HSENS 344 (463)
T ss_pred EcCCCC--cceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE----eccceEEEEecC-CCcee
Confidence 999999 7888888999999999999 567899999999999999985332222111 267899999998 45677
Q ss_pred EEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeee---CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCccc
Q 038537 196 LYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI---EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRG 272 (358)
Q Consensus 196 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~ 272 (358)
++++..||+++-+|+|... .....+..|...|.+++.+ +.++++++.|+.|++|++..... +.+..-.-.-+
T Consensus 345 f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~--~~v~~~~~~~~ 419 (463)
T KOG0270|consen 345 FFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP--KSVKEHSFKLG 419 (463)
T ss_pred EEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC--ccccccccccc
Confidence 8888999999999999854 4455688899898888765 58999999999999999986532 11211111123
Q ss_pred ceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 273 PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 273 ~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
...|.++.|+.+ .+|+.||..+.++|||+.+..
T Consensus 420 rl~c~~~~~~~a-----~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 420 RLHCFALDPDVA-----FTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ceeecccCCCcc-----eEEEecCccceEEEeecccCh
Confidence 467778888753 588999999999999997643
No 127
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=4.7e-26 Score=184.50 Aligned_cols=262 Identities=17% Similarity=0.270 Sum_probs=204.7
Q ss_pred EEeeeCCCcEEEEeCCCc---eeeeeeeec--ccceEEE--EecCCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 2 VFTGSSSTRIRVWRQPDC---VERGFIKAR--HGEVRAI--LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~---~~~~~~~~h--~~~v~~i--~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
++||+. |.|+|||+... ..+..+..- .+.|.++ ..+++.|++|+.-.++.|||+......-...
T Consensus 434 VyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikae-------- 504 (705)
T KOG0639|consen 434 VYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE-------- 504 (705)
T ss_pred eEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhh--------
Confidence 456665 67999998643 233444332 3345543 5589999999999999999998654322111
Q ss_pred eeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 154 (358)
+....-...+++.+||.+..+++..||.|.|||+.+.. .++.|++|.+.+.||.++++|..|-+|+-|
T Consensus 505 ----------ltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~--~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 505 ----------LTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred ----------cCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce--eeecccCCCCCceeEEecCCCceeecCCCc
Confidence 12223346778999999999999999999999999888 899999999999999999999999999999
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE-
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL- 233 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~- 233 (358)
.+||.||++++....+.. ..+.|.++.++| .+.++++|-.++.+.+...... ....+.-|...|+++
T Consensus 573 ntvRcWDlregrqlqqhd-----F~SQIfSLg~cP--~~dWlavGMens~vevlh~skp-----~kyqlhlheScVLSlK 640 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQHD-----FSSQIFSLGYCP--TGDWLAVGMENSNVEVLHTSKP-----EKYQLHLHESCVLSLK 640 (705)
T ss_pred cceeehhhhhhhhhhhhh-----hhhhheecccCC--CccceeeecccCcEEEEecCCc-----cceeecccccEEEEEE
Confidence 999999998776543332 357899999998 9999999999999999877652 222345566666554
Q ss_pred -eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 234 -VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 234 -~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
++.|+++++.+.|..+..|....+. .+...+ ....|.++..+.+ .++++||+.|....+|.+.
T Consensus 641 Fa~cGkwfvStGkDnlLnawrtPyGa----siFqsk-E~SsVlsCDIS~d------dkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 641 FAYCGKWFVSTGKDNLLNAWRTPYGA----SIFQSK-ESSSVLSCDISFD------DKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred ecccCceeeecCchhhhhhccCcccc----ceeecc-ccCcceeeeeccC------ceEEEecCCCcceEEEEEe
Confidence 5679999999999999999998884 233332 3568999999998 8899999999999999764
No 128
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=6e-27 Score=173.40 Aligned_cols=223 Identities=21% Similarity=0.296 Sum_probs=181.7
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
.|+++.|=+-+|||.-++..+..+. |.--|.+++| +.++|++|+.+..++|||++..+...
T Consensus 74 aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App---------------- 136 (334)
T KOG0278|consen 74 AASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP---------------- 136 (334)
T ss_pred hhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc----------------
Confidence 3678889999999999999887764 7777888877 57799999999999999998765422
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
..+.+|.+.|..+-|....+.+++++.|++||+||.+++. .++.+. ...+|+++.++++|++|.++ ..+.|.+
T Consensus 137 ---~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt--~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~F 209 (334)
T KOG0278|consen 137 ---KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT--EVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKF 209 (334)
T ss_pred ---hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc--EEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEE
Confidence 2447999999999999988999999999999999999998 666654 46789999999999877665 5678999
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eeeC
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAIE 237 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 237 (358)
||..+-....... ....|.+..+.| +...+++|+.|..++.||..++.....+ ..+|..+|.|+ +|+|
T Consensus 210 wdaksf~~lKs~k-----~P~nV~SASL~P--~k~~fVaGged~~~~kfDy~TgeEi~~~---nkgh~gpVhcVrFSPdG 279 (334)
T KOG0278|consen 210 WDAKSFGLLKSYK-----MPCNVESASLHP--KKEFFVAGGEDFKVYKFDYNTGEEIGSY---NKGHFGPVHCVRFSPDG 279 (334)
T ss_pred eccccccceeecc-----CccccccccccC--CCceEEecCcceEEEEEeccCCceeeec---ccCCCCceEEEEECCCC
Confidence 9986544332222 356788888888 8899999999999999999986544332 57888888665 6789
Q ss_pred CEEEEeeCCCeEEEEEcCCCc
Q 038537 238 KLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~ 258 (358)
...++|++||+|++|.+..++
T Consensus 280 E~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 280 ELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ceeeccCCCceEEEEEecCCC
Confidence 999999999999999987763
No 129
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9.4e-26 Score=179.84 Aligned_cols=230 Identities=17% Similarity=0.241 Sum_probs=176.8
Q ss_pred CEEeeeCCCcEEEEeCCCc---------------------eeeeeeeecccceEEEEec---CCEEEEEeCCceEEEEec
Q 038537 1 MVFTGSSSTRIRVWRQPDC---------------------VERGFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNF 56 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~---------------------~~~~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~ 56 (358)
|+|.|+.|..|.|||+.-. +.-..-.+|+..|.+++++ .+.||+||.|.+|++||+
T Consensus 194 yvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 194 YVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 6899999999999997410 0011123688889899886 468999999999999999
Q ss_pred ccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC-CCEEEEEecCCeEEEEEccCCcccccccccccccC
Q 038537 57 TVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA-EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESN 135 (358)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 135 (358)
.++++.. ++..|.+.|.++.|+|. ...|++|+.|++|.+.|.+... .....-...+.
T Consensus 274 ~~g~p~~--------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~--~s~~~wk~~g~ 331 (463)
T KOG0270|consen 274 DTGKPKS--------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS--NSGKEWKFDGE 331 (463)
T ss_pred CCCCcce--------------------ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcc--ccCceEEeccc
Confidence 9988754 34579999999999984 5689999999999999998533 22222234678
Q ss_pred eEEEEEcCC-CCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCc
Q 038537 136 VNAIVVNQD-DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMS 214 (358)
Q Consensus 136 v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 214 (358)
|-.++|.|. ...+++++.||+|+-+|+|... +.....++|..+|.++++++ ....++++++.|+.+++|++....
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~-~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNI-QTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecC-CCCcceeeccccceEEEEeecCCC
Confidence 999999994 4577888899999999998554 56778889999999999997 467889999999999999998744
Q ss_pred CCccccceeecccceeEEEeee---CCEEEEeeCCCeEEEEEcCCCc
Q 038537 215 GGFNHGGFLQGHCFAVLCLVAI---EKLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~ 258 (358)
........+.- ....|+.++ ...++.|+..+.+++||+.+..
T Consensus 408 ~~~v~~~~~~~--~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 408 PKSVKEHSFKL--GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred Ccccccccccc--cceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 43332222221 124455443 3678889999999999998874
No 130
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2e-24 Score=180.81 Aligned_cols=272 Identities=18% Similarity=0.214 Sum_probs=218.4
Q ss_pred EEeeeCCCcEEEEeCCCce-eeeeeeec-ccceEEEEec-CCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 2 VFTGSSSTRIRVWRQPDCV-ERGFIKAR-HGEVRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~-~~~~~~~h-~~~v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
||.+-.||.|.||++...- +...+.++ ...|-+++|. +..|++.+.+|.|.-||+.+.+....
T Consensus 40 lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~-------------- 105 (691)
T KOG2048|consen 40 LAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYN-------------- 105 (691)
T ss_pred eeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEE--------------
Confidence 6788899999999997644 34555555 4568889885 88999999999999999998776532
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
+....+.|++++.+|.+..++.|+.||.+..++...++.+....+...++.|.+++|+|++..++.|+.||.|+
T Consensus 106 ------~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 106 ------IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred ------ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 24567789999999999999999999988888888887666666777789999999999999999999999999
Q ss_pred EEEceecCCcceeeeeec----ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe
Q 038537 159 IWRRVYRENSHTLTMTLK----FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV 234 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
+||...+.........+. ....-|+++.+. ....|++|...|+|.+||... ..+......|...+.|+.
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L---rd~tI~sgDS~G~V~FWd~~~----gTLiqS~~~h~adVl~La 252 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL---RDSTIASGDSAGTVTFWDSIF----GTLIQSHSCHDADVLALA 252 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEe---ecCcEEEecCCceEEEEcccC----cchhhhhhhhhcceeEEE
Confidence 999987765442222221 234467788777 467899999999999999887 455555777888887776
Q ss_pred e--eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 235 A--IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 235 ~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
. +++.+++++.|+.|..|...+....+........|...|.+++..++ .|++|+.|..+.+=..+.
T Consensus 253 v~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--------~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 253 VADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--------ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--------eEEecceeeEEEEccccc
Confidence 4 57899999999999999888775433344445578889999999975 899999999999877665
No 131
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=5.2e-25 Score=185.72 Aligned_cols=303 Identities=17% Similarity=0.253 Sum_probs=213.7
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeee-c-------------------c----cceEEEEec--CCEEEEEeCCceEEEE
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKA-R-------------------H----GEVRAILAH--DNMLFTTNKDCKIRIW 54 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~-h-------------------~----~~v~~i~~~--~~~l~s~~~dg~i~iw 54 (358)
||+.|+.+|.|++++..+.....++.. | . ....++.|+ ...|.....|..++||
T Consensus 272 ~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvW 351 (1080)
T KOG1408|consen 272 LIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVW 351 (1080)
T ss_pred eEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEE
Confidence 589999999999999776444333321 1 0 012245555 4578888899999999
Q ss_pred ecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC-----------CCEEEEEecCCeEEEEEccCCcc
Q 038537 55 NFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA-----------EGLLYTGSFDKTVKAWRVLDKRC 123 (358)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----------~~~l~~~~~dg~i~iwd~~~~~~ 123 (358)
|++.-..+... ..+--|...|+.+.-.|. ...+++++.|++|++|++.....
T Consensus 352 DvrD~~kvgk~-----------------~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctn 414 (1080)
T KOG1408|consen 352 DVRDVNKVGKC-----------------SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTN 414 (1080)
T ss_pred eccccccccce-----------------eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccc
Confidence 99865543221 122457777777766551 23589999999999999865221
Q ss_pred ccc-----------cc------------------------ccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCc
Q 038537 124 TCV-----------DS------------------------FVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENS 168 (358)
Q Consensus 124 ~~~-----------~~------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 168 (358)
..+ .. .......+.+++.+|++++|++|..-|.+++|++ ..
T Consensus 415 n~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~L----q~ 490 (1080)
T KOG1408|consen 415 NQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDL----QE 490 (1080)
T ss_pred cceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEe----hh
Confidence 000 00 0112346899999999999999999999999999 44
Q ss_pred ceeeeeecccCCceeEEEEee-cCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee-----------------
Q 038537 169 HTLTMTLKFQQSSVNALALSS-FFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV----------------- 230 (358)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----------------- 230 (358)
......+++|...|.|+.++. .-..++|++++.|+.|++||.... +.+...+.+|...|
T Consensus 491 l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn---y~l~qtld~HSssITsvKFa~~gln~~Misc 567 (1080)
T KOG1408|consen 491 LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN---YDLVQTLDGHSSSITSVKFACNGLNRKMISC 567 (1080)
T ss_pred hhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc---cchhhhhcccccceeEEEEeecCCceEEEec
Confidence 445667788999999999984 123578999999999999998753 11122222222222
Q ss_pred ----------------------------------EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecC---cccc
Q 038537 231 ----------------------------------LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDG---HRGP 273 (358)
Q Consensus 231 ----------------------------------~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---h~~~ 273 (358)
..+.|..+++++++.|..|+|||+.++ ++...+++ |.+.
T Consensus 568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg----Kq~k~FKgs~~~eG~ 643 (1080)
T KOG1408|consen 568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG----KQVKSFKGSRDHEGD 643 (1080)
T ss_pred cCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccc----ceeeeecccccCCCc
Confidence 233445679999999999999999999 45555554 7788
Q ss_pred eEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCCccceeeecccCCCccccc
Q 038537 274 VRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNSKTTTTKMDYEMSPVLSP 344 (358)
Q Consensus 274 v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~ 344 (358)
...+...|. |.||++.+.|.++.++|.. .+.|+..+.+|..... ..+|..+...++++
T Consensus 644 lIKv~lDPS------giY~atScsdktl~~~Df~------sgEcvA~m~GHsE~VT-G~kF~nDCkHlISv 701 (1080)
T KOG1408|consen 644 LIKVILDPS------GIYLATSCSDKTLCFVDFV------SGECVAQMTGHSEAVT-GVKFLNDCKHLISV 701 (1080)
T ss_pred eEEEEECCC------ccEEEEeecCCceEEEEec------cchhhhhhcCcchhee-eeeecccchhheee
Confidence 889999999 8899999999999999998 7889999999976533 23333333344444
No 132
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=8.4e-24 Score=176.03 Aligned_cols=266 Identities=12% Similarity=0.068 Sum_probs=182.3
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEE-EEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNML-FTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
++++++.|+.|++||+.+++.+..+..+.. +.++.+ +++.+ ++++.++.|++||..+++.....
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~------------ 69 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTL------------ 69 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEec------------
Confidence 467999999999999999988888876654 445554 56665 56778999999999876543211
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEE-ecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC-
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTG-SFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG- 155 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 155 (358)
..+. .+..++|+|+++.++++ +.++.+++||+.+.+ .+..+. +...+.+++|+|++..++++..++
T Consensus 70 --------~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~--~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~ 137 (300)
T TIGR03866 70 --------PSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRK--VLAEIP-VGVEPEGMAVSPDGKIVVNTSETTN 137 (300)
T ss_pred --------cCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe--EEeEee-CCCCcceEEECCCCCEEEEEecCCC
Confidence 1222 24678999999877654 568999999998866 444443 234568899999999999988775
Q ss_pred cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEE-eecCCcEEEEEccCCcCCccccceeec-c----cce
Q 038537 156 SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYS-GSSDGSINFWEKDKMSGGFNHGGFLQG-H----CFA 229 (358)
Q Consensus 156 ~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~-~----~~~ 229 (358)
.+.+||..+...... .. ....+..++|+| ++.++++ +..++.|++||+++.+..........+ + ...
T Consensus 138 ~~~~~d~~~~~~~~~----~~-~~~~~~~~~~s~--dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (300)
T TIGR03866 138 MAHFIDTKTYEIVDN----VL-VDQRPRFAEFTA--DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV 210 (300)
T ss_pred eEEEEeCCCCeEEEE----EE-cCCCccEEEECC--CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence 466778754432211 11 233457788988 8887754 456999999999874322111100000 0 111
Q ss_pred eEEEeeeCCEEEE-eeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEc-cCCCcEEEEEee
Q 038537 230 VLCLVAIEKLIFS-GSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSS-SLDQTFKVWRVK 307 (358)
Q Consensus 230 ~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~-~~dg~v~iw~~~ 307 (358)
-.+++++++++++ .+.++.+.+||..+++ .+..+ .+...+.+++|+|+ +.+|+++ +.+|.|++||++
T Consensus 211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~----~~~~~-~~~~~~~~~~~~~~------g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 211 GIKLTKDGKTAFVALGPANRVAVVDAKTYE----VLDYL-LVGQRVWQLAFTPD------EKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred ceEECCCCCEEEEEcCCCCeEEEEECCCCc----EEEEE-EeCCCcceEEECCC------CCEEEEEcCCCCeEEEEECC
Confidence 2557788887544 4566789999998874 33332 23457899999999 7787765 579999999998
Q ss_pred eC
Q 038537 308 VM 309 (358)
Q Consensus 308 ~~ 309 (358)
..
T Consensus 280 ~~ 281 (300)
T TIGR03866 280 AL 281 (300)
T ss_pred CC
Confidence 53
No 133
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=3.3e-25 Score=173.36 Aligned_cols=260 Identities=18% Similarity=0.299 Sum_probs=191.8
Q ss_pred ecccceEEEEe----cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC-C
Q 038537 27 ARHGEVRAILA----HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA-E 101 (358)
Q Consensus 27 ~h~~~v~~i~~----~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~ 101 (358)
.|.+.+..+.. +..+.++=+..|.|.||++...-.... ..........+.+..++.+|...=..++|||- .
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~----~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALS----EPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhc----CccccccccccCceEEecccCccceeeecccccc
Confidence 45565655533 234666668899999999874321110 00001111345555678899999999999993 3
Q ss_pred CEEEEEecCCeEEEEEccCCcccc-cccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccC
Q 038537 102 GLLYTGSFDKTVKAWRVLDKRCTC-VDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ 179 (358)
Q Consensus 102 ~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 179 (358)
..|++|..-+.|++|...++.+.. ...+.+|+..|-.++|+| ....|++|+.||+|+|||+|.+.....+.. +.|.
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~--kAh~ 302 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST--KAHN 302 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe--eccC
Confidence 358899888999999999887643 345667999999999999 456899999999999999998865544433 8899
Q ss_pred CceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeee---CCEEEEeeCCCeEEEEEcCC
Q 038537 180 SSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI---EKLIFSGSEDTTIRVWRRAE 256 (358)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~ 256 (358)
+.|+.+.|+. +..+|++|+.||+++|||++..+.. .....+.-|..+|+++.+. ...|++++.|.+|.+||+..
T Consensus 303 sDVNVISWnr--~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 303 SDVNVISWNR--REPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceeeEEccC--CcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 9999999997 6669999999999999999985543 5556788899999998876 57899999999999999864
Q ss_pred Cce---------------eeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcE
Q 038537 257 GGC---------------YHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTF 301 (358)
Q Consensus 257 ~~~---------------~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v 301 (358)
... +.+++....+ ...|..+.|++..| .+|++.+.||.-
T Consensus 380 E~D~ee~~~~a~~~L~dlPpQLLFVHqG-Qke~KevhWH~QiP-----G~lvsTa~dGfn 433 (440)
T KOG0302|consen 380 EADEEEIDQEAAEGLQDLPPQLLFVHQG-QKEVKEVHWHRQIP-----GLLVSTAIDGFN 433 (440)
T ss_pred cCChhhhccccccchhcCCceeEEEecc-hhHhhhheeccCCC-----CeEEEeccccee
Confidence 321 1122222212 34688899999876 477888888743
No 134
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=4e-24 Score=173.36 Aligned_cols=263 Identities=16% Similarity=0.263 Sum_probs=201.6
Q ss_pred eCCCcEEEEeCCCceeeeeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCC
Q 038537 6 SSSTRIRVWRQPDCVERGFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82 (358)
Q Consensus 6 ~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
+.+..+.|||...+......+..+..|....|+ .+.+++++ .|.+.+|+...+...+...+...+
T Consensus 177 s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~----------- 244 (626)
T KOG2106|consen 177 SNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-KGHLYFWTLRGGSLVKRQGIFEKR----------- 244 (626)
T ss_pred CCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-CceEEEEEccCCceEEEeeccccc-----------
Confidence 345678899998888877777777788877774 56777776 578999999988776654443321
Q ss_pred CccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 038537 83 NTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRR 162 (358)
Q Consensus 83 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 162 (358)
....|.|++|.++|. +++|..+|.|.||+..+.+ ..+....|++.|.+++...+|.++ +|+.|..|..||-
T Consensus 245 -----ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~--~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~ 315 (626)
T KOG2106|consen 245 -----EKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNR--ISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDD 315 (626)
T ss_pred -----cceEEEEEEEcCCCC-EEeecCCceEEEEeCCCce--EEeEeeecCCceEEEEEecCccEe-ecCccceEEeccc
Confidence 225699999999886 7899999999999997766 444445999999999999888755 5999999999983
Q ss_pred eecCCc------------------------------------ceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEE
Q 038537 163 VYRENS------------------------------------HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSIN 206 (358)
Q Consensus 163 ~~~~~~------------------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 206 (358)
...+.. ..+.....+|......++..| +.+++++++.|+.++
T Consensus 316 ~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp--s~~q~~T~gqdk~v~ 393 (626)
T KOG2106|consen 316 NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP--SKNQLLTCGQDKHVR 393 (626)
T ss_pred cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC--ChhheeeccCcceEE
Confidence 211100 011122346777889999998 889999999999999
Q ss_pred EEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeeccccee
Q 038537 207 FWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKV 286 (358)
Q Consensus 207 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 286 (358)
+|+-.. ..+ ......+.....++|.| .++.|...|...+.|..+. ..+..-.. ..+++.++|+|+
T Consensus 394 lW~~~k--~~w---t~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~----~lv~~~~d-~~~ls~v~ysp~---- 458 (626)
T KOG2106|consen 394 LWNDHK--LEW---TKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQ----DLVTIHTD-NEQLSVVRYSPD---- 458 (626)
T ss_pred EccCCc--eeE---EEEecCceeEeeccCcc-eEEEeeccceEEEEecccc----eeEEEEec-CCceEEEEEcCC----
Confidence 999222 111 12334555667788888 9999999999999999985 44444444 889999999999
Q ss_pred eeCeEEEEccCCCcEEEEEeee
Q 038537 287 VMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 287 ~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
|.+||.|+.|+.|+||.+..
T Consensus 459 --G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 459 --GAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred --CCEEEEecCCCeEEEEEECC
Confidence 89999999999999999985
No 135
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=174.34 Aligned_cols=216 Identities=17% Similarity=0.210 Sum_probs=170.0
Q ss_pred ccCCCceEEEEEeCCC--CEEEEEecCCeEEEEEccC--------------CcccccccccccccCeEEEEEcC-CCCEE
Q 038537 86 QQHRDCVSCMAFYHAE--GLLYTGSFDKTVKAWRVLD--------------KRCTCVDSFVAHESNVNAIVVNQ-DDGFV 148 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 148 (358)
..|.+.++.+.-++-+ .+.++-+..|.|.||++.. .+..++.++.+|...-..|+|+| ....+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 4677888888877754 4566668889999999842 12346777888999999999999 33458
Q ss_pred EEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccc
Q 038537 149 FTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCF 228 (358)
Q Consensus 149 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 228 (358)
++|..-+.|++|...++.- ..-...+.+|...|..++|+|. ....|++|+.||+|+|||++....... .....|..
T Consensus 228 lsGDc~~~I~lw~~~~g~W-~vd~~Pf~gH~~SVEDLqWSpt-E~~vfaScS~DgsIrIWDiRs~~~~~~--~~~kAh~s 303 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSW-KVDQRPFTGHTKSVEDLQWSPT-EDGVFASCSCDGSIRIWDIRSGPKKAA--VSTKAHNS 303 (440)
T ss_pred ccCccccceEeeeeccCce-eecCccccccccchhhhccCCc-cCceEEeeecCceEEEEEecCCCccce--eEeeccCC
Confidence 8888889999999877432 2223445669999999999994 567999999999999999998543222 23467777
Q ss_pred eeEEEeeeC--CEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 229 AVLCLVAIE--KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 229 ~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
.|..++++. .+|++|+.||+++|||++.-+.. +++..++-|..+|++|.|+|.. ...|+++|.|..|.+||+
T Consensus 304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e-----~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHE-----DSVIAASGEDNQITIWDL 377 (440)
T ss_pred ceeeEEccCCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEecccc-----CceEEeccCCCcEEEEEe
Confidence 777777753 58999999999999999875432 6889999999999999999985 467888889999999999
Q ss_pred eeCCC
Q 038537 307 KVMPD 311 (358)
Q Consensus 307 ~~~~~ 311 (358)
...++
T Consensus 378 svE~D 382 (440)
T KOG0302|consen 378 SVEAD 382 (440)
T ss_pred eccCC
Confidence 87665
No 136
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=3.3e-25 Score=179.64 Aligned_cols=246 Identities=17% Similarity=0.291 Sum_probs=192.4
Q ss_pred ecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEE
Q 038537 27 ARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLL 104 (358)
Q Consensus 27 ~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 104 (358)
.|...|.++.. ...+++||+. |.|+|||+........ ...++ ......-|.++.++|||+.|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~P--vsqLd-------------cl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSP--VSQLD-------------CLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCc--ccccc-------------ccCcccceeeeEecCCCceE
Confidence 46666776665 3568888884 7899999986532111 11110 12345568999999999999
Q ss_pred EEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeE
Q 038537 105 YTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNA 184 (358)
Q Consensus 105 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~ 184 (358)
++|+.-.++.|||+..........+....-.+..++.+||.+..++++.||.|.|||+ ....+...+.+|...+.|
T Consensus 481 ivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDL----hnq~~VrqfqGhtDGasc 556 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDL----HNQTLVRQFQGHTDGASC 556 (705)
T ss_pred EeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEc----ccceeeecccCCCCCcee
Confidence 9999999999999987764344445444456888999999999999999999999999 455677888999999999
Q ss_pred EEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeee
Q 038537 185 LALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECL 264 (358)
Q Consensus 185 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 264 (358)
+.+++ +|..|.+|+.|.+|+.||++.+.....+. .......+..+|.+.+++.|-+++.+.+...... ..
T Consensus 557 Idis~--dGtklWTGGlDntvRcWDlregrqlqqhd---F~SQIfSLg~cP~~dWlavGMens~vevlh~skp-----~k 626 (705)
T KOG0639|consen 557 IDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHD---FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-----EK 626 (705)
T ss_pred EEecC--CCceeecCCCccceeehhhhhhhhhhhhh---hhhhheecccCCCccceeeecccCcEEEEecCCc-----cc
Confidence 99998 99999999999999999999854333321 1112223445789999999999999999887765 24
Q ss_pred eeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 265 AVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 265 ~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
..+.-|..-|.++.|.+. |+++++.+.|..+..|....
T Consensus 627 yqlhlheScVLSlKFa~c------GkwfvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 627 YQLHLHESCVLSLKFAYC------GKWFVSTGKDNLLNAWRTPY 664 (705)
T ss_pred eeecccccEEEEEEeccc------CceeeecCchhhhhhccCcc
Confidence 556679999999999999 99999999999999998764
No 137
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.8e-26 Score=194.41 Aligned_cols=247 Identities=24% Similarity=0.377 Sum_probs=202.9
Q ss_pred eeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecC
Q 038537 4 TGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSK 81 (358)
Q Consensus 4 tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
++..+-.+++|+.. .+-.|...+.++.. ....+++|+.|..+-+|.+.....+.
T Consensus 9 ~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~------------------ 64 (825)
T KOG0267|consen 9 KTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT------------------ 64 (825)
T ss_pred eeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh------------------
Confidence 33444556677653 33467777777654 57789999999999999987544332
Q ss_pred CCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038537 82 SNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWR 161 (358)
Q Consensus 82 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 161 (358)
.+.+|..+|.++.|+++..+|++|+.+|+|++||++..+ .++++.+|...+.++.|+|-+.+++.|+.|+.+++||
T Consensus 65 --S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk--~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD 140 (825)
T KOG0267|consen 65 --SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK--IVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWD 140 (825)
T ss_pred --eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh--hhhhhhccccCcceeeeccceEEeccccccccceehh
Confidence 247999999999999999999999999999999999888 7889999999999999999999999999999999999
Q ss_pred ceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eeeCCE
Q 038537 162 RVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAIEKL 239 (358)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 239 (358)
++.... ...++.|...+..+.|+| +|.+++.++.|..+++||+..+ .+...+..|...+..+ +|..-+
T Consensus 141 ~Rk~Gc----~~~~~s~~~vv~~l~lsP--~Gr~v~~g~ed~tvki~d~~ag----k~~~ef~~~e~~v~sle~hp~e~L 210 (825)
T KOG0267|consen 141 IRKKGC----SHTYKSHTRVVDVLRLSP--DGRWVASGGEDNTVKIWDLTAG----KLSKEFKSHEGKVQSLEFHPLEVL 210 (825)
T ss_pred hhccCc----eeeecCCcceeEEEeecC--CCceeeccCCcceeeeeccccc----ccccccccccccccccccCchhhh
Confidence 964443 445566889999999999 9999999999999999999873 3444466677666554 455678
Q ss_pred EEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 240 IFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 240 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
+++|+.|+++++||+++- +.+.........|.+.+|+|+ +..+++|..+
T Consensus 211 la~Gs~d~tv~f~dletf----e~I~s~~~~~~~v~~~~fn~~------~~~~~~G~q~ 259 (825)
T KOG0267|consen 211 LAPGSSDRTVRFWDLETF----EVISSGKPETDGVRSLAFNPD------GKIVLSGEQI 259 (825)
T ss_pred hccCCCCceeeeecccee----EEeeccCCccCCceeeeecCC------ceeeecCchh
Confidence 899999999999999985 667777777889999999999 7788877655
No 138
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.2e-24 Score=170.81 Aligned_cols=271 Identities=12% Similarity=0.191 Sum_probs=202.3
Q ss_pred CEEeeeCCCcEEEEeCC--CceeeeeeeecccceEEEEe--cCC-EEEEEeCCceEEEEecccccccccccccccCCCce
Q 038537 1 MVFTGSSSTRIRVWRQP--DCVERGFIKARHGEVRAILA--HDN-MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~--~~~~~~~~~~h~~~v~~i~~--~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
+|++++.||.++||.+. ....++.+.-...+|.+..+ +|. .+++++....++.||+.+.+..+....
T Consensus 227 lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~-------- 298 (514)
T KOG2055|consen 227 LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP-------- 298 (514)
T ss_pred eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC--------
Confidence 58899999999999875 34456666666777776655 666 899999999999999988766543322
Q ss_pred eeeecCCCccccC-CCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC
Q 038537 76 FLSFSKSNTQQQH-RDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 76 ~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 154 (358)
.++ ...+.....+|++++|+..+..|.|.+....+++ .+..++ ..+.|..++|+.++..|++++.+
T Consensus 299 ----------~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~e--li~s~K-ieG~v~~~~fsSdsk~l~~~~~~ 365 (514)
T KOG2055|consen 299 ----------YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKE--LITSFK-IEGVVSDFTFSSDSKELLASGGT 365 (514)
T ss_pred ----------CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhh--hhheee-eccEEeeEEEecCCcEEEEEcCC
Confidence 222 3457788899999999999999999999999888 566654 46889999999999999999999
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcC--Cccccceeeccccee--
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSG--GFNHGGFLQGHCFAV-- 230 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~-- 230 (358)
|.|.+||++......... ..+.|....+.++.++.+||+|+..|.|.|||..+... ..+....+..-...|
T Consensus 366 GeV~v~nl~~~~~~~rf~-----D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 366 GEVYVWNLRQNSCLHRFV-----DDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred ceEEEEecCCcceEEEEe-----ecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 999999997664333332 25566666666555999999999999999999765211 112222233333344
Q ss_pred EEEeeeCCEEEEee--CCCeEEEEEcCCCceeeeeeeee---cCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 231 LCLVAIEKLIFSGS--EDTTIRVWRRAEGGCYHECLAVL---DGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 231 ~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~---~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
+.|.++.++|+.++ .+..+++-.+.+.. ....+ ...-+.|+||+|+|. +.+||.|..+|.|.+|.
T Consensus 441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~T----VFsNfP~~n~~vg~vtc~aFSP~------sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNALRLVHVPSCT----VFSNFPTSNTKVGHVTCMAFSPN------SGYLAVGNEAGRVHLFK 510 (514)
T ss_pred eeeCcchhhhhhhhhccccceEEEecccee----eeccCCCCCCcccceEEEEecCC------CceEEeecCCCceeeEe
Confidence 45566788888776 56678888877652 12222 233457999999999 78999999999999999
Q ss_pred ee
Q 038537 306 VK 307 (358)
Q Consensus 306 ~~ 307 (358)
+.
T Consensus 511 L~ 512 (514)
T KOG2055|consen 511 LH 512 (514)
T ss_pred ec
Confidence 85
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.2e-24 Score=165.15 Aligned_cols=236 Identities=19% Similarity=0.334 Sum_probs=174.8
Q ss_pred eeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC
Q 038537 23 GFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99 (358)
Q Consensus 23 ~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 99 (358)
.....|.+.|+++..+ +.++++|+.||.|.+||+++....+...+... .. ..-...--.+|.-.|..+.|.|
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k---~~--c~v~~~h~~~Hky~iss~~WyP 111 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK---HK--CIVAKQHENGHKYAISSAIWYP 111 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeh---ee--eeccccCCccceeeeeeeEEee
Confidence 4456799999999875 78999999999999999986543221111000 00 0001112257889999999999
Q ss_pred -CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC---CCEEEEEeCCCcEEEEEceecCCcceeeeee
Q 038537 100 -AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD---DGFVFTCSSDGSVKIWRRVYRENSHTLTMTL 175 (358)
Q Consensus 100 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 175 (358)
|..++.+++.|.++++||..+.+ ....|+ .++.|.+-+++|- .-++++|..+-.|++.|+..+ .+...+
T Consensus 112 ~DtGmFtssSFDhtlKVWDtnTlQ--~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----s~sH~L 184 (397)
T KOG4283|consen 112 IDTGMFTSSSFDHTLKVWDTNTLQ--EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----SFSHTL 184 (397)
T ss_pred ecCceeecccccceEEEeecccce--eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC----cceeee
Confidence 66688999999999999999887 444443 4677888888883 347888889999999999555 456778
Q ss_pred cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcC
Q 038537 176 KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRA 255 (358)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 255 (358)
.+|...|.++.|+| ...-.|++|+.||.|++||++... |..++.|..
T Consensus 185 sGHr~~vlaV~Wsp-~~e~vLatgsaDg~irlWDiRras--------------------------------gcf~~lD~h 231 (397)
T KOG4283|consen 185 SGHRDGVLAVEWSP-SSEWVLATGSADGAIRLWDIRRAS--------------------------------GCFRVLDQH 231 (397)
T ss_pred ccccCceEEEEecc-CceeEEEecCCCceEEEEEeeccc--------------------------------ceeEEeecc
Confidence 89999999999999 345678899999999999998721 122233333
Q ss_pred CCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 256 EGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 256 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
.++.+ ..+.+-..|.+.|++++|..+ +.++++++.|..+++|+..+..
T Consensus 232 n~k~~-p~~~~n~ah~gkvngla~tSd------~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 232 NTKRP-PILKTNTAHYGKVNGLAWTSD------ARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred cCccC-ccccccccccceeeeeeeccc------chhhhhccCccceEEeecccCc
Confidence 22110 223345579999999999999 8999999999999999998654
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=181.92 Aligned_cols=246 Identities=19% Similarity=0.195 Sum_probs=191.7
Q ss_pred ecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEE
Q 038537 27 ARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLL 104 (358)
Q Consensus 27 ~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 104 (358)
+|...-+.+++ +|+.|++++.||.|++|+........ .++..+...|.+++. .+..|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-------------------~ti~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-------------------ETIDISGELVSSIAC--YSNHF 69 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-------------------chhhccCceeEEEee--cccce
Confidence 57777776666 68899999999999999987653111 122336777888877 45589
Q ss_pred EEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeE
Q 038537 105 YTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNA 184 (358)
Q Consensus 105 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~ 184 (358)
++|+.+++|.+|.+..++ .-..+...+-++.+++++.+|++++.|+.|-.|++.++.... ....+++|..+|.+
T Consensus 70 ~~~s~~~tv~~y~fps~~--~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s----~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGE--EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS----QEKVLRGHDAPVLQ 143 (933)
T ss_pred EEeeccceEEEeeCCCCC--ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc----hheeecccCCceee
Confidence 999999999999998887 333444567889999999999999999999999999985444 34566789999999
Q ss_pred EEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceee------cccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCc
Q 038537 185 LALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ------GHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 185 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 258 (358)
+.++| ++++||+.+.||.|++||+.+............ .......+++|++..++..+.|+.|.+|+..+.+
T Consensus 144 l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 144 LSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred eeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence 99999 999999999999999999998543333222111 2223346778888888888899999999999885
Q ss_pred eeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 259 CYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 259 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
..+. ...+.+...+..++|+|. |+|||+++.||.|.|||+++.
T Consensus 222 ~~f~--Lr~~~~ss~~~~~~wsPn------G~YiAAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 222 LQFK--LRDKLSSSKFSDLQWSPN------GKYIAASTLDGQILVWNVDTH 264 (933)
T ss_pred ehee--ecccccccceEEEEEcCC------CcEEeeeccCCcEEEEecccc
Confidence 4222 222234555999999999 999999999999999999853
No 141
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=161.28 Aligned_cols=272 Identities=12% Similarity=0.223 Sum_probs=199.3
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+||+|+.||.|.|||+.+....+.+.+|..+|.+++| +|..|+|+|.|..|.+||+..+.++....
T Consensus 37 ~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir------------ 104 (405)
T KOG1273|consen 37 YLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR------------ 104 (405)
T ss_pred eeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE------------
Confidence 5899999999999999999999999999999999988 68899999999999999999888665433
Q ss_pred ecCCCccccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCccccccccc--ccccCeEEEEEcCCCCEEEEEeCCC
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCVDSFV--AHESNVNAIVVNQDDGFVFTCSSDG 155 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg 155 (358)
...+|+.+.|+|.. +..++.-.+..-.+-++.......+..-. ..+....+..|.+.|+++++|...|
T Consensus 105 ---------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKG 175 (405)
T KOG1273|consen 105 ---------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKG 175 (405)
T ss_pred ---------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcc
Confidence 45679999999844 33444444444555555543321211111 0111223346889999999999999
Q ss_pred cEEEEEceecCCcceeeeeecccC-CceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCC-----cc----ccceeec
Q 038537 156 SVKIWRRVYRENSHTLTMTLKFQQ-SSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGG-----FN----HGGFLQG 225 (358)
Q Consensus 156 ~i~~wd~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-----~~----~~~~~~~ 225 (358)
.+.++|..+.+....+ +... ..|..+.++. .+..|+.-+.|+.|+.|+++..... .. +......
T Consensus 176 kllv~~a~t~e~vas~----rits~~~IK~I~~s~--~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk 249 (405)
T KOG1273|consen 176 KLLVYDAETLECVASF----RITSVQAIKQIIVSR--KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNK 249 (405)
T ss_pred eEEEEecchheeeeee----eechheeeeEEEEec--cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhh
Confidence 9999998666443333 2233 6788899987 9999999999999999998842111 11 1111111
Q ss_pred ccceeEEEeeeCCEEEEee-CCCeEEEEEcCCCceeeeeeeeecCcc-cceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 226 HCFAVLCLVAIEKLIFSGS-EDTTIRVWRRAEGGCYHECLAVLDGHR-GPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
..-...|++-+|.++++|+ .-..++||....| .+++.+.|.. .....+.|+|- ...+++- ..|.|+|
T Consensus 250 ~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G----sLVKILhG~kgE~l~DV~whp~------rp~i~si-~sg~v~i 318 (405)
T KOG1273|consen 250 LQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG----SLVKILHGTKGEELLDVNWHPV------RPIIASI-ASGVVYI 318 (405)
T ss_pred hhhhheeecCCccEEEeccccceeEEEEecCCc----ceeeeecCCchhheeecccccc------eeeeeec-cCCceEE
Confidence 2233477888899998877 3456999999998 6788888877 57789999998 4577777 7789999
Q ss_pred EEeeeCC
Q 038537 304 WRVKVMP 310 (358)
Q Consensus 304 w~~~~~~ 310 (358)
|.....+
T Consensus 319 w~~~~~e 325 (405)
T KOG1273|consen 319 WAVVQVE 325 (405)
T ss_pred EEeeccc
Confidence 9987543
No 142
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.9e-26 Score=192.37 Aligned_cols=201 Identities=23% Similarity=0.436 Sum_probs=175.9
Q ss_pred ccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceec
Q 038537 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYR 165 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 165 (358)
..|...+.|+..-..++.+++|+.|..+.+|.+.... .+..+.+|+.+|.++.|++...+|++|+.+|+|++||+...
T Consensus 25 ~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~--~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN--AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhhceeeeeccceeeccCCCceeeccccccCCc--hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 4688888998887788899999999999999987665 67788999999999999999999999999999999999644
Q ss_pred CCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccc--ceeEEEeeeCCEEEEe
Q 038537 166 ENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC--FAVLCLVAIEKLIFSG 243 (358)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ 243 (358)
. ....+.+|...+..+.|+| -+.+++.|+.|+.+++||++...... ...+|. ..+..|+|+|++++.|
T Consensus 103 k----~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~----~~~s~~~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 103 K----IVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSH----TYKSHTRVVDVLRLSPDGRWVASG 172 (825)
T ss_pred h----hhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCcee----eecCCcceeEEEeecCCCceeecc
Confidence 3 4457778999999999999 88899999999999999999743333 244454 3457788999999999
Q ss_pred eCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 244 SEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 244 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
++|..++|||...+ +....++.|.+.+..+.|+|. .-++++||.|++|++||+++
T Consensus 173 ~ed~tvki~d~~ag----k~~~ef~~~e~~v~sle~hp~------e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAG----KLSKEFKSHEGKVQSLEFHPL------EVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred CCcceeeeeccccc----ccccccccccccccccccCch------hhhhccCCCCceeeeeccce
Confidence 99999999999998 678899999999999999999 77999999999999999984
No 143
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=8.2e-23 Score=171.31 Aligned_cols=248 Identities=17% Similarity=0.229 Sum_probs=193.4
Q ss_pred ecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCcccc-CCCceEEEEEeCCCCE
Q 038537 27 ARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQ-HRDCVSCMAFYHAEGL 103 (358)
Q Consensus 27 ~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~ 103 (358)
--..+|.++++ ..+.||.+-.||.|.||++...-.... .+.+ -...|.+++|+ ++..
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~-------------------vi~g~~drsIE~L~W~-e~~R 82 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP-------------------VIHGPEDRSIESLAWA-EGGR 82 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE-------------------EEecCCCCceeeEEEc-cCCe
Confidence 34567888888 367899999999999999987533222 1123 34569999999 5567
Q ss_pred EEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCcee
Q 038537 104 LYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVN 183 (358)
Q Consensus 104 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~ 183 (358)
|++.+.+|.|.-||+.+.+ +...+....++|.+++.+|.+..++.|+.||.+..++...+ ..+....+....+.+.
T Consensus 83 LFS~g~sg~i~EwDl~~lk--~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~--~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHTLK--QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPD--KITYKRSLMRQKSRVL 158 (691)
T ss_pred EEeecCCceEEEEecccCc--eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCc--eEEEEeecccccceEE
Confidence 8999999999999999988 77777778899999999999999999999996666665433 3334444555678999
Q ss_pred EEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec----ccceeEEEee-eCCEEEEeeCCCeEEEEEcCCCc
Q 038537 184 ALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG----HCFAVLCLVA-IEKLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 258 (358)
+++|.| ++..+++|+.||.|++||..++.........+.+ ...-+.++.+ ....|++|..-|.|.+||...+
T Consensus 159 slsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g- 235 (691)
T KOG2048|consen 159 SLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG- 235 (691)
T ss_pred EEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc-
Confidence 999998 8999999999999999999885543321111111 2222222222 5689999999999999999998
Q ss_pred eeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 259 CYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 259 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
.++.....|.+.|.+++..++ +.+++++|.|+.|.-+......
T Consensus 236 ---TLiqS~~~h~adVl~Lav~~~------~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 236 ---TLIQSHSCHDADVLALAVADN------EDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred ---chhhhhhhhhcceeEEEEcCC------CCeEEEccCCCceEEEEecCCc
Confidence 678888999999999999999 7899999999999999887543
No 144
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=9e-25 Score=168.00 Aligned_cols=236 Identities=17% Similarity=0.247 Sum_probs=183.2
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
+||+|+.-|.|||.|+.+++....+.+|...|+.+.+. +++++++|.|..|++|++++..++..+.
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG----------- 175 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG----------- 175 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec-----------
Confidence 57888999999999999999999999999999999774 5699999999999999999988765433
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccc----cc----------------------ccccc
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCT----CV----------------------DSFVA 131 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~----------------------~~~~~ 131 (358)
.+.+|.+.|.++.|++++.+|++++.|.++++|++...+.. .. .+-.-
T Consensus 176 ------G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~di 249 (385)
T KOG1034|consen 176 ------GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDI 249 (385)
T ss_pred ------ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccc
Confidence 34799999999999999999999999999999999743310 00 01123
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEEc-eecCC---------cceeeeeecccCCceeEEEEeecCCCcEEEEeec
Q 038537 132 HESNVNAIVVNQDDGFVFTCSSDGSVKIWRR-VYREN---------SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS 201 (358)
Q Consensus 132 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~-~~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 201 (358)
|...|.|+.|- |+++++=+-++.|..|.. +-.+. .......+......|+-+.|...+-+++|+.|..
T Consensus 250 HrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 250 HRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred ccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC
Confidence 56667777775 688999999999999987 22211 1223344555667888888877667899999999
Q ss_pred CCcEEEEEccCCcCCccc--cceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcC
Q 038537 202 DGSINFWEKDKMSGGFNH--GGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRA 255 (358)
Q Consensus 202 dg~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 255 (358)
.|.|.+||++........ .....+....-.+++.++.+|+..+.|+.|.-||..
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999985543211 111222233447788899999999999999999864
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=2.3e-23 Score=166.92 Aligned_cols=274 Identities=15% Similarity=0.156 Sum_probs=199.2
Q ss_pred CEEeeeCCCcEEEEeCCC----ceeeeeeeecccceEEEEe---cCCEEEEEeCCceEEEEecccccccccccccccCCC
Q 038537 1 MVFTGSSSTRIRVWRQPD----CVERGFIKARHGEVRAILA---HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~----~~~~~~~~~h~~~v~~i~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
++|+|..-|.|-+||+.+ ..-+..+..|.++|.++.| +...+++.|.||+|+.=|+++.........
T Consensus 202 lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~------ 275 (498)
T KOG4328|consen 202 LVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSL------ 275 (498)
T ss_pred EEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhc------
Confidence 589999999999999952 2345667889999999988 456999999999999999987643221111
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEe
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCS 152 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 152 (358)
..-...+..+.|+.+...++.+..=|...+||.+++.. ....+.-|...|.+++++| ...+|++++
T Consensus 276 ------------~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s-~~~~~~lh~kKI~sv~~NP~~p~~laT~s 342 (498)
T KOG4328|consen 276 ------------DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS-EYENLRLHKKKITSVALNPVCPWFLATAS 342 (498)
T ss_pred ------------CccceeeeeccccCCCccEEEeecccceEEEEeecCCc-cchhhhhhhcccceeecCCCCchheeecc
Confidence 12334567788888888888888778999999998762 2445567888999999999 556899999
Q ss_pred CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccc----
Q 038537 153 SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCF---- 228 (358)
Q Consensus 153 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---- 228 (358)
.|++.+|||++.-.....+......|...|.+..|+| .+..|++.+.|..|+|||.............+. |..
T Consensus 343 ~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSP--s~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~R 419 (498)
T KOG4328|consen 343 LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSP--SGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGR 419 (498)
T ss_pred cCcceeeeehhhhcCCCCcceecccccceeeeeEEcC--CCCceEeeccCCceEEeecccccccCCccceee-ccCcccc
Confidence 9999999999876554433445566899999999999 666699999999999999852211122222121 211
Q ss_pred ---ee-EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcc-cceEE-EEeecccceeeeCe-EEEEccCCCcE
Q 038537 229 ---AV-LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHR-GPVRC-LAASLEMEKVVMGF-LVYSSSLDQTF 301 (358)
Q Consensus 229 ---~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~-~~v~~-i~~~~~~~~~~~~~-~l~s~~~dg~v 301 (358)
.. ..+.|+.+++++|-.-..|-|+|-..+ +.+..+.... ..|.+ ..|+|- +. +++-++..|.|
T Consensus 420 wlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~----q~v~el~~P~~~tI~~vn~~HP~------~~~~~aG~~s~Gki 489 (498)
T KOG4328|consen 420 WLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG----QMVCELHDPESSTIPSVNEFHPM------RDTLAAGGNSSGKI 489 (498)
T ss_pred cccchhheeCCCccEEEEeccCcceeEEcCCCC----EEeeeccCccccccccceeeccc------ccceeccCCccceE
Confidence 11 345678899999999999999999887 4455543322 24554 478998 55 45555567788
Q ss_pred EEEEe
Q 038537 302 KVWRV 306 (358)
Q Consensus 302 ~iw~~ 306 (358)
.||--
T Consensus 490 ~vft~ 494 (498)
T KOG4328|consen 490 YVFTN 494 (498)
T ss_pred EEEec
Confidence 87743
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.4e-23 Score=171.36 Aligned_cols=285 Identities=18% Similarity=0.222 Sum_probs=203.8
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCC---EEEEEeCCceEEEEeccccccccc----ccccccCCC
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDN---MLFTTNKDCKIRIWNFTVSDNFRT----KKVTTLPRR 73 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~----~~~~~~~~~ 73 (358)
+|++|+.||+||||.+.++.++..+.- .+.|.+++|++. -+++++....+.|-+-.-+..+.. ..+...+..
T Consensus 414 wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~ 492 (733)
T KOG0650|consen 414 WLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNE 492 (733)
T ss_pred eeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCc
Confidence 489999999999999999999988764 458999998532 333334444466655443322111 011111000
Q ss_pred ----ceeeeecCC---------CccccCCCceEEEEEeCCCCEEEEEecC---CeEEEEEccCCcccccccccccccCeE
Q 038537 74 ----SSFLSFSKS---------NTQQQHRDCVSCMAFYHAEGLLYTGSFD---KTVKAWRVLDKRCTCVDSFVAHESNVN 137 (358)
Q Consensus 74 ----~~~~~~~~~---------~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~ 137 (358)
.....+... .....|...|..+.|+..|.+|++...+ ..|.|.++.... ....|....+.|.
T Consensus 493 ~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~--sQ~PF~kskG~vq 570 (733)
T KOG0650|consen 493 SEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK--SQSPFRKSKGLVQ 570 (733)
T ss_pred cCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc--ccCchhhcCCcee
Confidence 011122221 2344688999999999999999987554 579999998776 3455555678899
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCc
Q 038537 138 AIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGF 217 (358)
Q Consensus 138 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 217 (358)
++.|+|...+|++++. ..|++||+..+ .+...+......|..++++| .|..|+.|+.|+.+..||+.-...+.
T Consensus 571 ~v~FHPs~p~lfVaTq-~~vRiYdL~kq----elvKkL~tg~kwiS~msihp--~GDnli~gs~d~k~~WfDldlsskPy 643 (733)
T KOG0650|consen 571 RVKFHPSKPYLFVATQ-RSVRIYDLSKQ----ELVKKLLTGSKWISSMSIHP--NGDNLILGSYDKKMCWFDLDLSSKPY 643 (733)
T ss_pred EEEecCCCceEEEEec-cceEEEehhHH----HHHHHHhcCCeeeeeeeecC--CCCeEEEecCCCeeEEEEcccCcchh
Confidence 9999999999988875 57999999543 33334444567889999998 89999999999999999998754333
Q ss_pred cccceeecccceeEEEeee--CCEEEEeeCCCeEEEEEcCC-----CceeeeeeeeecCcccc----eEEEEeeccccee
Q 038537 218 NHGGFLQGHCFAVLCLVAI--EKLIFSGSEDTTIRVWRRAE-----GGCYHECLAVLDGHRGP----VRCLAASLEMEKV 286 (358)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~h~~~----v~~i~~~~~~~~~ 286 (358)
+ .+..|...+..+.+. -.++++|+.||.+.||.-.- .....-++..+.+|... |..+.|+|.
T Consensus 644 k---~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~---- 716 (733)
T KOG0650|consen 644 K---TLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR---- 716 (733)
T ss_pred H---HhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCC----
Confidence 3 366677777666554 47899999999999984321 11123567888899766 999999999
Q ss_pred eeCeEEEEccCCCcEEEE
Q 038537 287 VMGFLVYSSSLDQTFKVW 304 (358)
Q Consensus 287 ~~~~~l~s~~~dg~v~iw 304 (358)
.-+|++++.||+|++|
T Consensus 717 --qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 717 --QPWLFSAGADGTIRLF 732 (733)
T ss_pred --CceEEecCCCceEEee
Confidence 5699999999999998
No 147
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=1.3e-23 Score=170.11 Aligned_cols=248 Identities=11% Similarity=0.145 Sum_probs=188.8
Q ss_pred EeeeCCCcEEEEeCCCc--ee--eeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 3 FTGSSSTRIRVWRQPDC--VE--RGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 3 ~tg~~dg~v~vw~~~~~--~~--~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
++.+.|..|++|.-... +. +....+....+.++..-..++++|+..+.|+|||+......+
T Consensus 51 as~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr--------------- 115 (673)
T KOG4378|consen 51 ASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR--------------- 115 (673)
T ss_pred eecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh---------------
Confidence 45566788999964322 11 122222222222222234799999999999999998443332
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccccc-ccCeEEEEEcCCCC-EEEEEeCCCc
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAH-ESNVNAIVVNQDDG-FVFTCSSDGS 156 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~dg~ 156 (358)
.+.+|...|+++.++....+||+++..|.|.|..+.++. ....|... ...|.-+.|+|..+ +|.+++.+|.
T Consensus 116 -----~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~--~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~ 188 (673)
T KOG4378|consen 116 -----FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ--KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA 188 (673)
T ss_pred -----hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc--cccceecCCCCeEEEeecccccceeeEeeccCCe
Confidence 347899999999999999999999999999999999887 44455433 34567899999655 5678899999
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeee
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI 236 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (358)
|.+||+.... ....-.+.|..+...++|+| .+..+|++.+.|..|.+||++...... .....|+...++|.++
T Consensus 189 VtlwDv~g~s---p~~~~~~~HsAP~~gicfsp-sne~l~vsVG~Dkki~~yD~~s~~s~~---~l~y~~Plstvaf~~~ 261 (673)
T KOG4378|consen 189 VTLWDVQGMS---PIFHASEAHSAPCRGICFSP-SNEALLVSVGYDKKINIYDIRSQASTD---RLTYSHPLSTVAFSEC 261 (673)
T ss_pred EEEEeccCCC---cccchhhhccCCcCcceecC-CccceEEEecccceEEEeecccccccc---eeeecCCcceeeecCC
Confidence 9999985433 23334567899999999999 467889999999999999999633222 2244677778899999
Q ss_pred CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecc
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
|.+|++|...|.|..||++..+ .++.++..|...|++++|-|.
T Consensus 262 G~~L~aG~s~G~~i~YD~R~~k---~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 262 GTYLCAGNSKGELIAYDMRSTK---APVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred ceEEEeecCCceEEEEecccCC---CCceEeeecccceeEEEeeec
Confidence 9999999999999999999875 789999999999999999886
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=3.2e-23 Score=167.94 Aligned_cols=291 Identities=18% Similarity=0.234 Sum_probs=204.8
Q ss_pred eeeCCCcEEEEeCCCceeeeeeeeccc--ceEEEEec-CCEEEEE--eCCceEEEEecccccccccccccccCCCceeee
Q 038537 4 TGSSSTRIRVWRQPDCVERGFIKARHG--EVRAILAH-DNMLFTT--NKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 4 tg~~dg~v~vw~~~~~~~~~~~~~h~~--~v~~i~~~-~~~l~s~--~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
.++....+++||+...+....+..|+. .+.++.|. .+.|+++ +.|..+++|.-.... .......
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~--~~Vp~~~--------- 75 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT--PEVPRVR--------- 75 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCC--Cccceee---------
Confidence 344445699999987666555555543 37777775 3445555 467789999765431 1111000
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
....+.-.|++......++++|+..+.|+|||++... +.+.++.|.+.|+++.++-...+|++++..|.|.
T Consensus 76 -------k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl--~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdii 146 (673)
T KOG4378|consen 76 -------KLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKL--IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDII 146 (673)
T ss_pred -------ccccchHHHHhhhhcceeeeccCcCceeeehhhHHHH--HhhhccCCcceeEEEEecCCcceeEEeccCCcEE
Confidence 0111133455554455899999999999999999655 7778899999999999999999999999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEeee
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAI 236 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 236 (358)
+..+.++....++.. .....+.-+.|++ ....+|.+++.+|.|.+||.......+.. ...|..+. .||+|.
T Consensus 147 ih~~~t~~~tt~f~~---~sgqsvRll~ys~-skr~lL~~asd~G~VtlwDv~g~sp~~~~---~~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFTI---DSGQSVRLLRYSP-SKRFLLSIASDKGAVTLWDVQGMSPIFHA---SEAHSAPCRGICFSPS 219 (673)
T ss_pred EEecccCccccceec---CCCCeEEEeeccc-ccceeeEeeccCCeEEEEeccCCCcccch---hhhccCCcCcceecCC
Confidence 999877665443332 1245667899998 34567888999999999999875543333 44565554 677774
Q ss_pred -CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcce
Q 038537 237 -EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKT 315 (358)
Q Consensus 237 -~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 315 (358)
+.+|++.+.|..|.+||..... ....+ ....+.+.++|.++ |.+|+.|...|.|..||++..+.+
T Consensus 220 ne~l~vsVG~Dkki~~yD~~s~~----s~~~l-~y~~Plstvaf~~~------G~~L~aG~s~G~~i~YD~R~~k~P--- 285 (673)
T KOG4378|consen 220 NEALLVSVGYDKKINIYDIRSQA----STDRL-TYSHPLSTVAFSEC------GTYLCAGNSKGELIAYDMRSTKAP--- 285 (673)
T ss_pred ccceEEEecccceEEEeeccccc----cccee-eecCCcceeeecCC------ceEEEeecCCceEEEEecccCCCC---
Confidence 6788999999999999999763 23333 23568899999999 999999999999999999986554
Q ss_pred eecccccCCCCccceeeecccCCCc
Q 038537 316 MCLDYSDYHSNSKTTTTKMDYEMSP 340 (358)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (358)
+...-.|.+. +....|..+|
T Consensus 286 --v~v~sah~~s---Vt~vafq~s~ 305 (673)
T KOG4378|consen 286 --VAVRSAHDAS---VTRVAFQPSP 305 (673)
T ss_pred --ceEeeecccc---eeEEEeeecc
Confidence 3334445444 3344444443
No 149
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=3.4e-23 Score=172.45 Aligned_cols=249 Identities=16% Similarity=0.219 Sum_probs=176.5
Q ss_pred CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEc
Q 038537 39 DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRV 118 (358)
Q Consensus 39 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 118 (358)
...|+.+.+||.|.++|............. .....|...|..+.|-|....|++++.|.++++||+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~l--------------k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdv 129 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQL--------------KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDV 129 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhh--------------cccccccceeEeeccCCCceeEEEccCCceeeeeee
Confidence 348899999999999998754332111100 123689999999999997778999999999999999
Q ss_pred cCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcc-----------------------eeeee
Q 038537 119 LDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSH-----------------------TLTMT 174 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~-----------------------~~~~~ 174 (358)
.+.++.-...+.+|...|.+++|.| +...|++|+.||.|.|||++-..... +-...
T Consensus 130 k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k 209 (720)
T KOG0321|consen 130 KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRK 209 (720)
T ss_pred ccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccc
Confidence 9988444445889999999999999 56689999999999999987543100 00111
Q ss_pred ecccCCc----eeEEEEeecCCCcEEEEeec-CCcEEEEEccCCcCCccccc----eeecc---cceeEEE--eeeCCEE
Q 038537 175 LKFQQSS----VNALALSSFFDNYFLYSGSS-DGSINFWEKDKMSGGFNHGG----FLQGH---CFAVLCL--VAIEKLI 240 (358)
Q Consensus 175 ~~~~~~~----i~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~----~~~~~---~~~~~~~--~~~~~~l 240 (358)
.+++... |+.+.|- |...|++++. |+.|++||+++......... .+..+ ...++++ ...|.+|
T Consensus 210 ~kA~s~ti~ssvTvv~fk---De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L 286 (720)
T KOG0321|consen 210 WKAASNTIFSSVTVVLFK---DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL 286 (720)
T ss_pred cccccCceeeeeEEEEEe---ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence 2233333 4444443 8889999888 99999999998543322211 11112 2233444 4457888
Q ss_pred EEeeCCCeEEEEEcCCCceeeeeeeeecCcccce--EEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCC
Q 038537 241 FSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPV--RCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQ 312 (358)
Q Consensus 241 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v--~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 312 (358)
++.+.|+.|++|++.+... .++..+.++...- ..-..+|+ +.+|++|+.|....+|.+......
T Consensus 287 ~AsCtD~sIy~ynm~s~s~--sP~~~~sg~~~~sf~vks~lSpd------~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 287 FASCTDNSIYFYNMRSLSI--SPVAEFSGKLNSSFYVKSELSPD------DCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred EEEecCCcEEEEeccccCc--CchhhccCcccceeeeeeecCCC------CceEeccCCCcceeeeeecCccCC
Confidence 8888899999999998654 4556665554321 12246788 889999999999999999875433
No 150
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.92 E-value=1.6e-23 Score=156.47 Aligned_cols=254 Identities=16% Similarity=0.177 Sum_probs=186.6
Q ss_pred eeeeeeecccceEEEEec-CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC
Q 038537 21 ERGFIKARHGEVRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99 (358)
Q Consensus 21 ~~~~~~~h~~~v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 99 (358)
+...++.|.+.|+++.|. +++|++|...|.|++|++.+........ ..|...|+.+.--|
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r-------------------~~g~~~it~lq~~p 66 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIR-------------------LFGRLFITNLQSIP 66 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhh-------------------hhccceeeceeecC
Confidence 345677999999999885 5689999999999999999876543222 14667788888777
Q ss_pred CCCEEEEEecCCeEEEEEccCCcccccccc--------------------------------------------------
Q 038537 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSF-------------------------------------------------- 129 (358)
Q Consensus 100 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------------------------------------------- 129 (358)
+ ..|.+-+.|+.+.+|++.......+..+
T Consensus 67 ~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~ 145 (323)
T KOG0322|consen 67 N-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDS 145 (323)
T ss_pred C-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCch
Confidence 6 4577888888898888754221000000
Q ss_pred -cccccCeEEEEEcC-CC--CEEEEEeCCCcEEEEEceecCCcc------eeeeeecccCCceeEEEEeecCCCcEEEEe
Q 038537 130 -VAHESNVNAIVVNQ-DD--GFVFTCSSDGSVKIWRRVYRENSH------TLTMTLKFQQSSVNALALSSFFDNYFLYSG 199 (358)
Q Consensus 130 -~~~~~~v~~~~~~~-~~--~~l~~~~~dg~i~~wd~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 199 (358)
....+.+.|..+.. ++ -++++|.++|.+.+||+.++.... +.......|..++.++.+.+ ..+.=++|
T Consensus 146 ~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas--~~~rGisg 223 (323)
T KOG0322|consen 146 ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS--SCDRGISG 223 (323)
T ss_pred hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech--hhcCCcCC
Confidence 01123455555332 22 257788899999999998763322 23334456889999999987 45556788
Q ss_pred ecCCcEEEEEccCCcCCccccce--eecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEE
Q 038537 200 SSDGSINFWEKDKMSGGFNHGGF--LQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCL 277 (358)
Q Consensus 200 ~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i 277 (358)
+.+..+..|++............ +......-+.+-||++.+|+++.|+.||+|+.++. +++..++-|.+.|+++
T Consensus 224 ga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl----~pLAVLkyHsagvn~v 299 (323)
T KOG0322|consen 224 GADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL----NPLAVLKYHSAGVNAV 299 (323)
T ss_pred CccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC----CchhhhhhhhcceeEE
Confidence 88889999998864333333222 22223344678899999999999999999999998 7899999999999999
Q ss_pred EeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 278 AASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 278 ~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
+|+|+ ..++|++|.|+.|.+|++
T Consensus 300 Afspd------~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 300 AFSPD------CELMAAASKDARISLWKL 322 (323)
T ss_pred EeCCC------CchhhhccCCceEEeeec
Confidence 99999 679999999999999986
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=4.9e-23 Score=165.07 Aligned_cols=268 Identities=15% Similarity=0.174 Sum_probs=198.9
Q ss_pred EeCCCceeeeeeeecccceEEEEecC----CEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCC
Q 038537 14 WRQPDCVERGFIKARHGEVRAILAHD----NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHR 89 (358)
Q Consensus 14 w~~~~~~~~~~~~~h~~~v~~i~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 89 (358)
.|+.+-......+.+.+.|+++.|++ +.+++|..-|.|-+||+.+.+...... ..+..|.
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----------------~~f~~hs 234 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----------------YLFTPHS 234 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce----------------EEeccCC
Confidence 44555566677788999999999853 689999999999999997433221111 1336799
Q ss_pred CceEEEEEeCC-CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCc
Q 038537 90 DCVSCMAFYHA-EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENS 168 (358)
Q Consensus 90 ~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 168 (358)
.+|.++.|+|. ...+++.+.||+|+.-|++......+..+......+.++.|+.+...++.+..=|...+||++++...
T Consensus 235 ~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 235 GPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred ccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence 99999999994 46899999999999999998875566666555667888899988888888888789999999987654
Q ss_pred ceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEeeeCCEEEEeeCC
Q 038537 169 HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSED 246 (358)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d 246 (358)
... +..|...|..++++| -...+|++++.|++.+|||++..............|...| .+++|.+..|++.+.|
T Consensus 315 ~~~---~~lh~kKI~sv~~NP-~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 315 YEN---LRLHKKKITSVALNP-VCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred chh---hhhhhcccceeecCC-CCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccC
Confidence 333 344777999999999 4677899999999999999998655443222233454444 6778887779999999
Q ss_pred CeEEEEEcCCCceeeeeeeeecCccc------ceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 247 TTIRVWRRAEGGCYHECLAVLDGHRG------PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~~~~h~~------~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
..|+|||..--....++..++ .|.. ......|.|+ ..++++|-.-..|-|+|-..
T Consensus 391 ~~IRv~dss~~sa~~~p~~~I-~Hn~~t~RwlT~fKA~W~P~------~~li~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 391 NEIRVFDSSCISAKDEPLGTI-PHNNRTGRWLTPFKAAWDPD------YNLIVVGRYPRPIDVFDGNG 451 (498)
T ss_pred CceEEeecccccccCCcccee-eccCcccccccchhheeCCC------ccEEEEeccCcceeEEcCCC
Confidence 999999984111001333333 2322 2345679998 67999999988899988763
No 152
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=3.7e-22 Score=153.50 Aligned_cols=263 Identities=17% Similarity=0.209 Sum_probs=187.1
Q ss_pred EEeeeCCCcEEEEeCCCc-------e-----eeeeeeec-ccceEEEEe---------cCCEEEEEeCCceEEEEecccc
Q 038537 2 VFTGSSSTRIRVWRQPDC-------V-----ERGFIKAR-HGEVRAILA---------HDNMLFTTNKDCKIRIWNFTVS 59 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~-------~-----~~~~~~~h-~~~v~~i~~---------~~~~l~s~~~dg~i~iw~~~~~ 59 (358)
|++-+.|..+++|++... . ....++-. ...|...++ +.+++++.+.+.-|++||.-++
T Consensus 64 iL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG 143 (406)
T KOG2919|consen 64 ILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTG 143 (406)
T ss_pred EEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeecccc
Confidence 567788999999997521 0 11112211 233443333 4568999999999999999988
Q ss_pred cccccccccccCCCceeeeecCCCccccCCC---ceEEEEEeCCCCEEEEEecCCeEEEEEc-cCCcccccccccc----
Q 038537 60 DNFRTKKVTTLPRRSSFLSFSKSNTQQQHRD---CVSCMAFYHAEGLLYTGSFDKTVKAWRV-LDKRCTCVDSFVA---- 131 (358)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~---- 131 (358)
+....... ..|.+ ...+++|+|||.+|++|. ..+|+++|+ +.++...+.....
T Consensus 144 ~lraSy~~------------------ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 144 KLRASYRA------------------YDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred ccccchhh------------------hhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccc
Confidence 76543332 22333 346899999999999765 578999999 5554323333222
Q ss_pred -cccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-CCcEEEE
Q 038537 132 -HESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-DGSINFW 208 (358)
Q Consensus 132 -~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg~i~i~ 208 (358)
..+-+.+++|+| +...+++++....+-|+.- ....+...+.+|.+.|+.+.|.+ +|+.|.+|.. |-.|..|
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~----~~~~pl~llggh~gGvThL~~~e--dGn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYND----DGRRPLQLLGGHGGGVTHLQWCE--DGNKLFSGARKDDKILCW 278 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEec----CCCCceeeecccCCCeeeEEecc--CcCeecccccCCCeEEEE
Confidence 367789999999 5558999999888888865 33344555668999999999999 8999999876 7789999
Q ss_pred EccCCcCCccccceeec-cccee-EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeeccccee
Q 038537 209 EKDKMSGGFNHGGFLQG-HCFAV-LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKV 286 (358)
Q Consensus 209 d~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 286 (358)
|++....+.-......+ ...+| ..+.+.+++|++|+.||.|++||++... ..+..+..|...++.++++|-.
T Consensus 279 DiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g---n~~sv~~~~sd~vNgvslnP~m--- 352 (406)
T KOG2919|consen 279 DIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG---NEVSVTGNYSDTVNGVSLNPIM--- 352 (406)
T ss_pred eehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC---CcccccccccccccceecCccc---
Confidence 99974433222111222 22233 5677889999999999999999999842 4567777899999999999984
Q ss_pred eeCeEEEEccCC
Q 038537 287 VMGFLVYSSSLD 298 (358)
Q Consensus 287 ~~~~~l~s~~~d 298 (358)
.++++++..
T Consensus 353 ---pilatssGq 361 (406)
T KOG2919|consen 353 ---PILATSSGQ 361 (406)
T ss_pred ---ceeeeccCc
Confidence 478887754
No 153
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.3e-22 Score=155.75 Aligned_cols=215 Identities=16% Similarity=0.191 Sum_probs=153.3
Q ss_pred CccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccc--ccccCeEEEEEcCCCCEEEEE-eCCCcEEE
Q 038537 83 NTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFV--AHESNVNAIVVNQDDGFVFTC-SSDGSVKI 159 (358)
Q Consensus 83 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~ 159 (358)
..+++|.+.|++++|+.||+.|++++.|+.|++|++++-..+.-+.+. -.-+..+.+.|.||.+-++.. -...++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 367899999999999999999999999999999999864321111111 112356889999987755544 45668999
Q ss_pred EEceecCCcc---eeee-----eecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeE
Q 038537 160 WRRVYRENSH---TLTM-----TLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL 231 (358)
Q Consensus 160 wd~~~~~~~~---~~~~-----~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 231 (358)
|.+...+... .... ..+.|.-.+..+-... ++.+|++++.|..|.+|+++. .. ..... .......-.
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~--~~k~imsas~dt~i~lw~lkG-q~-L~~id-tnq~~n~~a 234 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG--NAKYIMSASLDTKICLWDLKG-QL-LQSID-TNQSSNYDA 234 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecC--CceEEEEecCCCcEEEEecCC-ce-eeeec-cccccccce
Confidence 9875443211 1110 1123444555555554 889999999999999999984 11 11111 111223346
Q ss_pred EEeeeCCEEEEeeCCCeEEEEEcCCCce----eeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 232 CLVAIEKLIFSGSEDTTIRVWRRAEGGC----YHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 232 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
+++|+|+++++++..--|++|.+--++. .-..+..+++|...|+.++|+++ ...++|.|.||+++|||.+
T Consensus 235 avSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~------S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 235 AVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNS------STRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred eeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCC------cceeEEEecCCcEEEeecc
Confidence 7899999999999988899998643210 11346678999999999999999 7899999999999999986
Q ss_pred e
Q 038537 308 V 308 (358)
Q Consensus 308 ~ 308 (358)
-
T Consensus 309 V 309 (420)
T KOG2096|consen 309 V 309 (420)
T ss_pred c
Confidence 4
No 154
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=1.5e-22 Score=155.83 Aligned_cols=273 Identities=17% Similarity=0.240 Sum_probs=191.2
Q ss_pred EEeeeCCCcEEEEeCCCcee---eeeee--ecccceEEEEe----c--CCEEEEEeCCceEEEEeccccccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVE---RGFIK--ARHGEVRAILA----H--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~---~~~~~--~h~~~v~~i~~----~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 70 (358)
++|.+. ..+.+|+...... ++.+. .|...-..+++ . +-++|+|+.-|.|+|.|+.+++...
T Consensus 58 fatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~------- 129 (385)
T KOG1034|consen 58 FATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK------- 129 (385)
T ss_pred EEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc-------
Confidence 344444 4578887654332 22222 24444444444 1 3488899999999999999876653
Q ss_pred CCCceeeeecCCCccccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCcccccccc---cccccCeEEEEEcCCCC
Q 038537 71 PRRSSFLSFSKSNTQQQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCVDSF---VAHESNVNAIVVNQDDG 146 (358)
Q Consensus 71 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 146 (358)
.+.+|...|+.+.++|+. +++++++.|..|++|++++.. ++..+ .+|.+.|.++.|++++.
T Consensus 130 -------------~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~--Cv~VfGG~egHrdeVLSvD~~~~gd 194 (385)
T KOG1034|consen 130 -------------NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV--CVAVFGGVEGHRDEVLSVDFSLDGD 194 (385)
T ss_pred -------------ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe--EEEEecccccccCcEEEEEEcCCCC
Confidence 346999999999999965 688999999999999999988 55554 57999999999999999
Q ss_pred EEEEEeCCCcEEEEEceecCCcceee------------------------eeecccCCceeEEEEeecCCCcEEEEeecC
Q 038537 147 FVFTCSSDGSVKIWRRVYRENSHTLT------------------------MTLKFQQSSVNALALSSFFDNYFLYSGSSD 202 (358)
Q Consensus 147 ~l~~~~~dg~i~~wd~~~~~~~~~~~------------------------~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 202 (358)
+|++++.|.++.+|++...+-...+. .....|...|.|+.|. ++++++-+-+
T Consensus 195 ~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~----gd~ilSksce 270 (385)
T KOG1034|consen 195 RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF----GDFILSKSCE 270 (385)
T ss_pred eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH----hhheeecccC
Confidence 99999999999999986332111000 0223466677777774 6899999999
Q ss_pred CcEEEEEccCCcCCc----------cccceeecccce--e--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeec
Q 038537 203 GSINFWEKDKMSGGF----------NHGGFLQGHCFA--V--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLD 268 (358)
Q Consensus 203 g~i~i~d~~~~~~~~----------~~~~~~~~~~~~--~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 268 (358)
+.|..|......... .....+.-.... - .++.+-++.||.|...|.|++||++..+..........
T Consensus 271 naI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 271 NAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred ceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 999999874322111 011111111111 1 23344578999999999999999998764322222222
Q ss_pred CcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 269 GHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 269 ~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
.....|...+|+.+ +.+|+..++|++|--||..
T Consensus 351 ~~~~tVRQ~sfS~d------gs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRD------GSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cccceeeeeeeccc------CcEEEEEeCCCcEEEEEee
Confidence 23457999999999 8899999999999999864
No 155
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=3e-22 Score=168.40 Aligned_cols=282 Identities=18% Similarity=0.264 Sum_probs=202.2
Q ss_pred CEEeeeCCCcEEEEeCCCc--eeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDC--VERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~--~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
++++|+.||.|++|.++.. ..+..+.+|...+.|+..........+.|+.+.+||.+..+......+
T Consensus 71 ~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~----------- 139 (764)
T KOG1063|consen 71 EMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVL----------- 139 (764)
T ss_pred eEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehhe-----------
Confidence 4799999999999999743 345667777777777766555554457899999999954441110000
Q ss_pred ecCCCccccCCCceEEEEEeCCC-C-EEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCC---CEEEEEeC
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAE-G-LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD---GFVFTCSS 153 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~ 153 (358)
.+....--..|+++.|+. . .++.|+.+..|.++.-...+...+..+.+|.+.|.+++|...+ -+++++++
T Consensus 140 -----rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ 214 (764)
T KOG1063|consen 140 -----RFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ 214 (764)
T ss_pred -----ehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCC
Confidence 001111223566666633 3 4566788888888887777767888899999999999998744 38899999
Q ss_pred CCcEEEEEceecCCcc---------------------eee------eeecccCCceeEEEEeecCCCcEEEEeecCCcEE
Q 038537 154 DGSVKIWRRVYRENSH---------------------TLT------MTLKFQQSSVNALALSSFFDNYFLYSGSSDGSIN 206 (358)
Q Consensus 154 dg~i~~wd~~~~~~~~---------------------~~~------~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 206 (358)
|..||+|.+.-..... .+. ..+.+|...|.++.|.| .+..|++++.|.++.
T Consensus 215 D~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p--~~~~LLSASaDksmi 292 (764)
T KOG1063|consen 215 DRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP--EGLDLLSASADKSMI 292 (764)
T ss_pred ceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc--chhhheecccCcceE
Confidence 9999999886544111 111 12348999999999998 888999999999999
Q ss_pred EEEccCCcCCccccceee---ccccee--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeec
Q 038537 207 FWEKDKMSGGFNHGGFLQ---GHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASL 281 (358)
Q Consensus 207 i~d~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 281 (358)
+|......+.......+. +..... .-++++++.+++-+.-|..++|..... ..+.+...+.||.+.|+++.|+|
T Consensus 293 iW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~-~~w~~~~~iSGH~~~V~dv~W~p 371 (764)
T KOG1063|consen 293 IWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDK-TFWTQEPVISGHVDGVKDVDWDP 371 (764)
T ss_pred EEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCc-cceeeccccccccccceeeeecC
Confidence 998877544433322222 112112 335677888999999999999983332 22355667789999999999999
Q ss_pred ccceeeeCeEEEEccCCCcEEEEEee
Q 038537 282 EMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 282 ~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
. |.+|+|.|.|.+-|++---
T Consensus 372 s------GeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 372 S------GEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred C------CCEEEEeccccceeeeccc
Confidence 9 8999999999999997543
No 156
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.8e-23 Score=171.80 Aligned_cols=267 Identities=25% Similarity=0.353 Sum_probs=195.6
Q ss_pred CEEEEEeCCceEEEE--ecccccccccccccccCCCce--eeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEE
Q 038537 40 NMLFTTNKDCKIRIW--NFTVSDNFRTKKVTTLPRRSS--FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKA 115 (358)
Q Consensus 40 ~~l~s~~~dg~i~iw--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~i 115 (358)
...++...+....+| ++.......... ..+.... ...+....++..|.+.|+.+.|+|....|++++.||.+.+
T Consensus 243 ~~~~g~d~~l~~~l~~~tla~l~I~~~~d--d~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~ 320 (577)
T KOG0642|consen 243 SISVGADEDLMSRLGLGTLAGLTIEDEFD--DLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKL 320 (577)
T ss_pred CccccCchHHHHhhcccchhccccccccc--chhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhh
Confidence 356666777777888 444322111111 0000000 1123444477899999999999999999999999999999
Q ss_pred EEccC------CcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceec------CCcceeeeeecccCCcee
Q 038537 116 WRVLD------KRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYR------ENSHTLTMTLKFQQSSVN 183 (358)
Q Consensus 116 wd~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~------~~~~~~~~~~~~~~~~i~ 183 (358)
|++.. ...+++.+|.+|.++|.|+++.+++..+++|+.||+|+.|++... .....+...+.+|...++
T Consensus 321 WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw 400 (577)
T KOG0642|consen 321 WNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVW 400 (577)
T ss_pred hhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceecccccee
Confidence 99932 334578889999999999999999999999999999999976422 122344566788999999
Q ss_pred EEEEeecCCCcEEEEeecCCcEEEEEccCCcCC-ccc------c---------------------------------cee
Q 038537 184 ALALSSFFDNYFLYSGSSDGSINFWEKDKMSGG-FNH------G---------------------------------GFL 223 (358)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~------~---------------------------------~~~ 223 (358)
.+++++ ....|++++.||++++|+....... +.. . ..+
T Consensus 401 ~l~~s~--~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~ 478 (577)
T KOG0642|consen 401 LLALSS--TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIF 478 (577)
T ss_pred eeeecc--cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeec
Confidence 999998 7778999999999999987653320 000 0 000
Q ss_pred ec---------ccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEE
Q 038537 224 QG---------HCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYS 294 (358)
Q Consensus 224 ~~---------~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s 294 (358)
.. .....+-..+...+.+++.+|+.|+++|..++ .++.....|...++++++.|+ |-+|++
T Consensus 479 ~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~----~~l~s~~a~~~svtslai~~n------g~~l~s 548 (577)
T KOG0642|consen 479 ESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG----KILHSMVAHKDSVTSLAIDPN------GPYLMS 548 (577)
T ss_pred cccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc----ccchheeeccceecceeecCC------CceEEe
Confidence 00 00111222345678899999999999999999 678888899999999999999 789999
Q ss_pred ccCCCcEEEEEeeeCCCCcceeecccccCCCC
Q 038537 295 SSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSN 326 (358)
Q Consensus 295 ~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 326 (358)
++.||.+++|.+. ...|..+...|..
T Consensus 549 ~s~d~sv~l~kld------~k~~~~es~~~r~ 574 (577)
T KOG0642|consen 549 GSHDGSVRLWKLD------VKTCVLESTAHRK 574 (577)
T ss_pred ecCCceeehhhcc------chheeeccccccc
Confidence 9999999999997 4566666666543
No 157
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.8e-23 Score=183.95 Aligned_cols=241 Identities=18% Similarity=0.209 Sum_probs=182.3
Q ss_pred EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCC-EEEEEecCCeEEEEEcc
Q 038537 41 MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEG-LLYTGSFDKTVKAWRVL 119 (358)
Q Consensus 41 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 119 (358)
.|+.|..||.|.+||...-.. ... .....+...|.+.|..+.|++.+. +|++|+.||.|.|||+.
T Consensus 82 lIaGG~edG~I~ly~p~~~~~--~~~------------~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDln 147 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIA--NAS------------EEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLN 147 (1049)
T ss_pred eeeccccCCceEEecchhhcc--Ccc------------hHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccC
Confidence 688899999999999875310 000 011124468999999999999665 99999999999999998
Q ss_pred CCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEE
Q 038537 120 DKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYS 198 (358)
Q Consensus 120 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 198 (358)
..+......-....+.|.+++|+. ....|++++.+|.+.|||++..+....+. .......+..++|+|+ +...+++
T Consensus 148 n~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls--~~~~~~~~S~l~WhP~-~aTql~~ 224 (1049)
T KOG0307|consen 148 KPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS--DTPGRMHCSVLAWHPD-HATQLLV 224 (1049)
T ss_pred CcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc--cCCCccceeeeeeCCC-Cceeeee
Confidence 765221111223467899999997 45578888999999999997664333222 1222345789999994 4455666
Q ss_pred eecCC---cEEEEEccCCcCCccccceeecccceeEEEee---eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCccc
Q 038537 199 GSSDG---SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA---IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRG 272 (358)
Q Consensus 199 ~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~ 272 (358)
++.|. .|.+||+|..... ...+.+|...++++++ |..++++++.|+.|.+|+.+++ +.+..+.....
T Consensus 225 As~dd~~PviqlWDlR~assP---~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg----Evl~~~p~~~n 297 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSP---LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG----EVLGELPAQGN 297 (1049)
T ss_pred ecCCCCCceeEeecccccCCc---hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc----eEeeecCCCCc
Confidence 66543 5999999974433 3346899999999987 4589999999999999999998 67888888888
Q ss_pred ceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 273 PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 273 ~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
.+..+.|+|..+ ..++.++-||.|.|+.+....
T Consensus 298 W~fdv~w~pr~P-----~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 298 WCFDVQWCPRNP-----SVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ceeeeeecCCCc-----chhhhheeccceeeeeeecCC
Confidence 999999999865 589999999999999998654
No 158
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.1e-22 Score=158.08 Aligned_cols=247 Identities=14% Similarity=0.209 Sum_probs=190.8
Q ss_pred ccceEEEEecC--CEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCC-EEE
Q 038537 29 HGEVRAILAHD--NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEG-LLY 105 (358)
Q Consensus 29 ~~~v~~i~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~ 105 (358)
.+.|+++.|++ ..+++|+.||+++||.++........ .+.-...+|.+.+|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lq------------------S~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQ------------------SIHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhhe------------------eeeeccCccceeeecCCCceEEE
Confidence 46899999875 48999999999999999865432111 1123456799999999998 899
Q ss_pred EEecCCeEEEEEccCCcccccccccccc-cCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeE
Q 038537 106 TGSFDKTVKAWRVLDKRCTCVDSFVAHE-SNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNA 184 (358)
Q Consensus 106 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~ 184 (358)
+++....++.||+.+.+...+....++. ..+.....++++++|+..+..|.|.+....+++....+. ..+.|..
T Consensus 275 ~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-----ieG~v~~ 349 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-----IEGVVSD 349 (514)
T ss_pred ecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-----eccEEee
Confidence 9999999999999998866666666665 356778889999999999999999999887666554444 3688999
Q ss_pred EEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCc--eeee
Q 038537 185 LALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGG--CYHE 262 (358)
Q Consensus 185 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~ 262 (358)
+.|+. ++..|++++.+|.|.+||++.......... ..+-....+|.+.++.+||+|+..|.|.|||..+.. ...+
T Consensus 350 ~~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~Pk 426 (514)
T KOG2055|consen 350 FTFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPK 426 (514)
T ss_pred EEEec--CCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCC
Confidence 99997 899999999999999999998532222111 112234557888999999999999999999965421 1126
Q ss_pred eeeeecCcccceEEEEeecccceeeeCeEEEEccC--CCcEEEEEee
Q 038537 263 CLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSL--DQTFKVWRVK 307 (358)
Q Consensus 263 ~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~--dg~v~iw~~~ 307 (358)
++..+..-...|++|+|+|+ .++||.+|. +..+|+=.+.
T Consensus 427 Pik~~dNLtt~Itsl~Fn~d------~qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 427 PIKTVDNLTTAITSLQFNHD------AQILAIASRVKKNALRLVHVP 467 (514)
T ss_pred chhhhhhhheeeeeeeeCcc------hhhhhhhhhccccceEEEecc
Confidence 67777777789999999999 778877764 5678877665
No 159
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=1.1e-21 Score=148.65 Aligned_cols=280 Identities=15% Similarity=0.173 Sum_probs=195.5
Q ss_pred EEEEEe----CCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC-CCEEEEEecC-----
Q 038537 41 MLFTTN----KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA-EGLLYTGSFD----- 110 (358)
Q Consensus 41 ~l~s~~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d----- 110 (358)
.+++|. .|+.|.+.+++.....-.. ..+..|.+.|+.++-+|- .+.|+++..+
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~s-----------------kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~ 90 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLS-----------------KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSG 90 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhh-----------------hhhhcCCcceehhhcCCCCCceEEEEEeccCCCc
Confidence 455554 4678888877754332111 244678899999999995 4566666442
Q ss_pred --CeEEEEEccCCc-------cccccccc-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCC-cceeeeee-ccc
Q 038537 111 --KTVKAWRVLDKR-------CTCVDSFV-AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYREN-SHTLTMTL-KFQ 178 (358)
Q Consensus 111 --g~i~iwd~~~~~-------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~-~~~ 178 (358)
-.+.||.+.... ++++..+. .+-+.|.|+.|.|++..+++-. |..|.+|++..... ...+.... ..+
T Consensus 91 vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~ 169 (370)
T KOG1007|consen 91 VLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEM 169 (370)
T ss_pred ceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccc
Confidence 257899986532 22334443 4456899999999999988876 88899999976654 22222211 224
Q ss_pred CCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeC---CEEEEeeCCCeEEEEEcC
Q 038537 179 QSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE---KLIFSGSEDTTIRVWRRA 255 (358)
Q Consensus 179 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~ 255 (358)
....++-+|+|..+++.+++. .|+++..||++++...... ...|...+..+.+++ .+|++|+.||.|++||.+
T Consensus 170 ~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI---~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R 245 (370)
T KOG1007|consen 170 RHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI---EDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTR 245 (370)
T ss_pred cceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcch---hhhhcceeeeccCCCCceEEEEEcCCCccEEEEecc
Confidence 667888999998899988887 5789999999986554443 456766777776654 488999999999999999
Q ss_pred CCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceee-cc--cccCCC-------
Q 038537 256 EGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMC-LD--YSDYHS------- 325 (358)
Q Consensus 256 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~--~~~~~~------- 325 (358)
..+ .++.++.+|...|.++.|+|.. .+++++||.|..|.+|.......++...- .+ +..++.
T Consensus 246 ~tk---~pv~el~~HsHWvW~VRfn~~h-----dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kp 317 (370)
T KOG1007|consen 246 KTK---FPVQELPGHSHWVWAVRFNPEH-----DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKP 317 (370)
T ss_pred CCC---ccccccCCCceEEEEEEecCcc-----ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccc
Confidence 875 7899999999999999999985 47999999999999998765442211110 00 111110
Q ss_pred CccceeeecccCCCcccccccchhh
Q 038537 326 NSKTTTTKMDYEMSPVLSPSWVEKK 350 (358)
Q Consensus 326 ~~~~~~~~~~~~~~~v~s~~W~~~~ 350 (358)
-.......++-+...|....|+...
T Consensus 318 L~dg~l~tydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 318 LQDGQLETYDEHEDSVYALAWSSAD 342 (370)
T ss_pred ccccccccccccccceEEEeeccCC
Confidence 1122344677788889888888653
No 160
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=1.6e-22 Score=168.79 Aligned_cols=119 Identities=24% Similarity=0.295 Sum_probs=99.4
Q ss_pred ceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcC---CccccceeecccceeEEEeee---CCEEEEeeCCCeEEEEEc
Q 038537 181 SVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSG---GFNHGGFLQGHCFAVLCLVAI---EKLIFSGSEDTTIRVWRR 254 (358)
Q Consensus 181 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~ 254 (358)
.|+.+.|.| .|...|++++.||.|++|.+..... .......+..|...|+.+.+. .+.|++++.|.+|++||+
T Consensus 629 ~vtDl~WdP-FD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 629 LVTDLHWDP-FDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred eeeecccCC-CChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 466677777 5778899999999999999886432 234445677888888777665 489999999999999999
Q ss_pred CCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 255 AEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
++. +....+.+|.+.|.+++|+|+ |+.+++.+.||+|++|+.+..+
T Consensus 708 ~~~----~~~~~l~gHtdqIf~~AWSpd------Gr~~AtVcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 708 ANA----KLYSRLVGHTDQIFGIAWSPD------GRRIATVCKDGTLRVYEPRSRE 753 (1012)
T ss_pred hhh----hhhheeccCcCceeEEEECCC------CcceeeeecCceEEEeCCCCCC
Confidence 998 557788899999999999999 9999999999999999987644
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.4e-22 Score=150.81 Aligned_cols=199 Identities=15% Similarity=0.159 Sum_probs=154.4
Q ss_pred eEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCccee
Q 038537 92 VSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTL 171 (358)
Q Consensus 92 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 171 (358)
..|+.|++.|.+||+|+.||.|.|||+.+.. .-..+.+|..+|++++|+++|+.|++++.|..|.+||+..+.....+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~--iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR--IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc--hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence 7899999999999999999999999999988 67788899999999999999999999999999999999887755544
Q ss_pred eeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee---EEEeeeCCEEEEeeCCCe
Q 038537 172 TMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV---LCLVAIEKLIFSGSEDTT 248 (358)
Q Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~dg~ 248 (358)
. ..++|+.+.|+|...+..+++ -.+..-.+-++..+....... ...+....+ ..+.+.|+++++|...|.
T Consensus 104 r-----f~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~h~~Lp~-d~d~dln~sas~~~fdr~g~yIitGtsKGk 176 (405)
T KOG1273|consen 104 R-----FDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPKHSVLPK-DDDGDLNSSASHGVFDRRGKYIITGTSKGK 176 (405)
T ss_pred E-----ccCccceeeeccccCCeEEEE-EecCCcEEEEecCCceeeccC-CCccccccccccccccCCCCEEEEecCcce
Confidence 4 378999999999544444444 344445666655422111110 011111111 236678999999999999
Q ss_pred EEEEEcCCCceeeeeeeeecCcc-cceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 249 IRVWRRAEGGCYHECLAVLDGHR-GPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 249 i~iwd~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
+.++|..+. +++..++-.. ..|..+.++.. |++|+.-+.|..||.|+++..
T Consensus 177 llv~~a~t~----e~vas~rits~~~IK~I~~s~~------g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 177 LLVYDAETL----ECVASFRITSVQAIKQIIVSRK------GRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred EEEEecchh----eeeeeeeechheeeeEEEEecc------CcEEEEecCCceEEEEehhhh
Confidence 999999998 5555555444 67889999998 889999999999999999843
No 162
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=2.8e-21 Score=169.98 Aligned_cols=281 Identities=20% Similarity=0.284 Sum_probs=191.9
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecc---cceEEEEe----cCCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARH---GEVRAILA----HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~---~~v~~i~~----~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
++++...-.|+|||.+.++....|..+. ..|+.+.. +...+++|+.||.|+||+--....-+...+.
T Consensus 1079 i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVT------ 1152 (1387)
T KOG1517|consen 1079 IAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVT------ 1152 (1387)
T ss_pred eEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEE------
Confidence 4566656689999999999887776654 45777765 4568999999999999974432210000000
Q ss_pred eeeeecCC-CccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccc-ccccCeEEEEEcC-CCCEEEEE
Q 038537 75 SFLSFSKS-NTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFV-AHESNVNAIVVNQ-DDGFVFTC 151 (358)
Q Consensus 75 ~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~ 151 (358)
.+... ..+.+..+.=.-++|.....+|++++.-..|+|||..... ....+. +.+..|+++.-+. .|+.+++|
T Consensus 1153 ---aw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~--~~~diP~~s~t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1153 ---AWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ--VVADIPYGSSTLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred ---eeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce--eEeecccCCCccceeecccccCCceEEEe
Confidence 01000 0111222222456787766677777778999999998766 344333 3455677776554 57999999
Q ss_pred eCCCcEEEEEceecCCcceeeeeecccCCc--eeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceee----c
Q 038537 152 SSDGSVKIWRRVYRENSHTLTMTLKFQQSS--VNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ----G 225 (358)
Q Consensus 152 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~ 225 (358)
..||.|++||.+..... ......+.|+.. |..+.+.+.+.+ .|++|+.||.|++||++.... ........ |
T Consensus 1228 faDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~-elvSgs~~G~I~~~DlR~~~~-e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLG-ELVSGSQDGDIQLLDLRMSSK-ETFLTIVAHWEYG 1304 (1387)
T ss_pred ecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCc-ceeeeccCCeEEEEecccCcc-cccceeeeccccC
Confidence 99999999999866443 344556667776 999999873333 699999999999999998421 12211111 2
Q ss_pred ccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeec-------CcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 226 HCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLD-------GHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
.......++.+...+|+|+. +.|.||++...+ +..++ ...+.+.+++|+|. .-+||+|+.|
T Consensus 1305 s~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-----l~~~k~n~~F~~q~~gs~scL~FHP~------~~llAaG~~D 1372 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-----LNIIKYNPGFMGQRIGSVSCLAFHPH------RLLLAAGSAD 1372 (1387)
T ss_pred ccceeeeeccCCCeeeecCc-ceEEEEecChhh-----hcccccCcccccCcCCCcceeeecch------hHhhhhccCC
Confidence 22344555677899999998 999999998653 22222 23457899999999 6689999999
Q ss_pred CcEEEEEeee
Q 038537 299 QTFKVWRVKV 308 (358)
Q Consensus 299 g~v~iw~~~~ 308 (358)
.+|.||....
T Consensus 1373 s~V~iYs~~k 1382 (1387)
T KOG1517|consen 1373 STVSIYSCEK 1382 (1387)
T ss_pred ceEEEeecCC
Confidence 9999998764
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=1.1e-21 Score=155.09 Aligned_cols=286 Identities=16% Similarity=0.206 Sum_probs=192.8
Q ss_pred CEEeeeCCCcEEEEeCCCc---------eeeeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPDC---------VERGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTT 69 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~---------~~~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 69 (358)
.|+||+.|..|++|-+... +....+..|...|+++.|+ |+.|++|+.+|.|.+|....-..... ..
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~---d~ 104 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDA---DT 104 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccc---cc
Confidence 4799999999999987432 2345677899999999885 66999999999999998764111100 00
Q ss_pred cCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEE
Q 038537 70 LPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVF 149 (358)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 149 (358)
+.....-.+.....+.+|...|..++|+|++.++++++.|..+++||+..++ ....+..|...+..++|.|-+++++
T Consensus 105 -e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~--l~~~~~dh~~yvqgvawDpl~qyv~ 181 (434)
T KOG1009|consen 105 -EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ--LLAILDDHEHYVQGVAWDPLNQYVA 181 (434)
T ss_pred -hhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce--eEeeccccccccceeecchhhhhhh
Confidence 0000001122223567899999999999999999999999999999999998 7778889999999999999999999
Q ss_pred EEeCCCcEEEEEceecCCcceeee-e-----e---------cccC----CceeEEEEeecCCCcEEEEeec----CCc--
Q 038537 150 TCSSDGSVKIWRRVYRENSHTLTM-T-----L---------KFQQ----SSVNALALSSFFDNYFLYSGSS----DGS-- 204 (358)
Q Consensus 150 ~~~~dg~i~~wd~~~~~~~~~~~~-~-----~---------~~~~----~~i~~~~~~~~~~~~~l~~~~~----dg~-- 204 (358)
+-+.|...+.+.+........... . . -.|+ .-...++|+| +|.++++... .+.
T Consensus 182 s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP--dG~llvtPag~~~~g~~~~ 259 (434)
T KOG1009|consen 182 SKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP--DGSLLVTPAGLFKVGGGVF 259 (434)
T ss_pred hhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC--CCcEEEcccceeeeCCcee
Confidence 999998777777654332221110 0 0 0111 1234567777 8888887643 222
Q ss_pred ---EEEEEccCCcCCccccceeecccceeEE--Ee------------------eeCCEEEEeeCCCeEEEEEcCCCceee
Q 038537 205 ---INFWEKDKMSGGFNHGGFLQGHCFAVLC--LV------------------AIEKLIFSGSEDTTIRVWRRAEGGCYH 261 (358)
Q Consensus 205 ---i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~------------------~~~~~l~~~~~dg~i~iwd~~~~~~~~ 261 (358)
.++|+-...+.+... +.......+. ++ |.+-.++.++. ..|++||.++..
T Consensus 260 ~n~tYvfsrk~l~rP~~~---lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~~~--- 332 (434)
T KOG1009|consen 260 RNTSYVFSRKDLKRPAAR---LPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQTLE--- 332 (434)
T ss_pred eceeEeeccccccCceee---cCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEecccccc---
Confidence 345543332221111 1111111111 11 22334555654 569999999873
Q ss_pred eeee-eecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 262 ECLA-VLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 262 ~~~~-~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
++. .-.-|-.+|++++|+++ |..|+..|.||...+-.++.
T Consensus 333 -P~~~v~nihy~~iTDiaws~d------g~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 333 -PLAVVDNIHYSAITDIAWSDD------GSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred -ceEEEeeeeeeeecceeecCC------CcEEEEeccCCceEEEEEcc
Confidence 333 33348899999999999 88999999999988866654
No 164
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.89 E-value=9.3e-21 Score=163.00 Aligned_cols=273 Identities=13% Similarity=0.137 Sum_probs=193.8
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEEe---cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCcc
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAILA---HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQ 85 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (358)
+.+.||++...............|.++.+ ++++++.|..+|.|.+||+..+.......+. ...
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls--------------~~~ 287 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS--------------ALE 287 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc--------------ccc
Confidence 47999999877444444455678888866 6889999999999999999877653211111 122
Q ss_pred ccCCCceEEEEEeCCCC--EEEEEecCCeEEEEEccCCcccccc----ccc------ccccCeEEEEEcC-CCCEEEEEe
Q 038537 86 QQHRDCVSCMAFYHAEG--LLYTGSFDKTVKAWRVLDKRCTCVD----SFV------AHESNVNAIVVNQ-DDGFVFTCS 152 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~----~~~------~~~~~v~~~~~~~-~~~~l~~~~ 152 (358)
..|..+++.+.|..+.. -+++++.||.|..|+++.-..+... ... .....+++++|.+ +...+++|+
T Consensus 288 ~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT 367 (555)
T KOG1587|consen 288 VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT 367 (555)
T ss_pred ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc
Confidence 57999999999976544 4999999999999988654321111 011 1234688999988 667899999
Q ss_pred CCCcEEEEEceecCCcc----eeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccc
Q 038537 153 SDGSVKIWRRVYRENSH----TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCF 228 (358)
Q Consensus 153 ~dg~i~~wd~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 228 (358)
++|.|..-+........ +....+..|.+.|.++.++|.. ...+++++ |.+++||...... ........+..
T Consensus 368 e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~-~k~fls~g-DW~vriWs~~~~~---~Pl~~~~~~~~ 442 (555)
T KOG1587|consen 368 EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY-PKNFLSVG-DWTVRIWSEDVIA---SPLLSLDSSPD 442 (555)
T ss_pred CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc-cceeeeec-cceeEeccccCCC---Ccchhhhhccc
Confidence 99998874432222222 3334556788999999999943 34444444 9999999977311 22222444455
Q ss_pred eeEEEeee---CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 229 AVLCLVAI---EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 229 ~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
.++++.+. +..|+++..||.|.+||+..... .++.....+....+.+.|++. |+.|+.|...|.+.+|+
T Consensus 443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~--~Pv~s~~~~~~~l~~~~~s~~------g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE--EPVLSQKVCSPALTRVRWSPN------GKLLAVGDANGTTHILK 514 (555)
T ss_pred eeeeeEEcCcCceEEEEEcCCCceehhhhhcccc--CCcccccccccccceeecCCC------CcEEEEecCCCcEEEEE
Confidence 56555543 57899999999999999987654 566666666777888999998 89999999999999999
Q ss_pred eee
Q 038537 306 VKV 308 (358)
Q Consensus 306 ~~~ 308 (358)
+..
T Consensus 515 l~~ 517 (555)
T KOG1587|consen 515 LSE 517 (555)
T ss_pred cCc
Confidence 964
No 165
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.8e-21 Score=160.13 Aligned_cols=265 Identities=17% Similarity=0.172 Sum_probs=192.2
Q ss_pred eeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEe
Q 038537 21 ERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFY 98 (358)
Q Consensus 21 ~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 98 (358)
+...+.+|++.|.+|+. .|.+|++|+.||+|+||.+.++.+++.... .+.|.|++|+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~---------------------d~~I~~vaw~ 450 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF---------------------DSEIRSVAWN 450 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee---------------------cceeEEEEec
Confidence 34567899999999977 488999999999999999999999876442 3469999999
Q ss_pred CCCC--EEEEEecCCeEEEEEccCCc--------------------------c---------cccccccccccCeEEEEE
Q 038537 99 HAEG--LLYTGSFDKTVKAWRVLDKR--------------------------C---------TCVDSFVAHESNVNAIVV 141 (358)
Q Consensus 99 ~~~~--~l~~~~~dg~i~iwd~~~~~--------------------------~---------~~~~~~~~~~~~v~~~~~ 141 (358)
|.+. .||++-. ..+.|.+..-+. + .-+.....|...|..+.|
T Consensus 451 P~~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW 529 (733)
T KOG0650|consen 451 PLSDLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW 529 (733)
T ss_pred CCCCceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeee
Confidence 9765 3444433 335555432110 0 001122347788999999
Q ss_pred cCCCCEEEEEeCC---CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcc
Q 038537 142 NQDDGFVFTCSSD---GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFN 218 (358)
Q Consensus 142 ~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 218 (358)
+..|.+|++...+ ..|.|.++...... ..+....+.+.++.|+| ...+|++++. ..|++||+....
T Consensus 530 HrkGDYlatV~~~~~~~~VliHQLSK~~sQ----~PF~kskG~vq~v~FHP--s~p~lfVaTq-~~vRiYdL~kqe---- 598 (733)
T KOG0650|consen 530 HRKGDYLATVMPDSGNKSVLIHQLSKRKSQ----SPFRKSKGLVQRVKFHP--SKPYLFVATQ-RSVRIYDLSKQE---- 598 (733)
T ss_pred ecCCceEEEeccCCCcceEEEEeccccccc----CchhhcCCceeEEEecC--CCceEEEEec-cceEEEehhHHH----
Confidence 9999999998764 46888888544322 33444578899999999 7777777765 579999998732
Q ss_pred ccceeeccc--ceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEcc
Q 038537 219 HGGFLQGHC--FAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSS 296 (358)
Q Consensus 219 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~ 296 (358)
+...+.... ....++++.|..|+.|+.|+.+..||+.-.. ++.+.+.-|...+++++|++.. .++++|+
T Consensus 599 lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlss---kPyk~lr~H~~avr~Va~H~ry------PLfas~s 669 (733)
T KOG0650|consen 599 LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS---KPYKTLRLHEKAVRSVAFHKRY------PLFASGS 669 (733)
T ss_pred HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc---chhHHhhhhhhhhhhhhhcccc------ceeeeec
Confidence 222222222 2336677889999999999999999998764 6788889999999999999984 4999999
Q ss_pred CCCcEEEEEeeeCCC---CcceeecccccCCCCc
Q 038537 297 LDQTFKVWRVKVMPD---QEKTMCLDYSDYHSNS 327 (358)
Q Consensus 297 ~dg~v~iw~~~~~~~---~~~~~~~~~~~~~~~~ 327 (358)
.||++.|+--....+ ..-...+..+.+|...
T Consensus 670 dDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~ 703 (733)
T KOG0650|consen 670 DDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT 703 (733)
T ss_pred CCCcEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence 999999986543322 2334556667777543
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=1.2e-21 Score=154.43 Aligned_cols=235 Identities=15% Similarity=0.215 Sum_probs=167.8
Q ss_pred eeeecccceEEEEe---cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC
Q 038537 24 FIKARHGEVRAILA---HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA 100 (358)
Q Consensus 24 ~~~~h~~~v~~i~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 100 (358)
.+.+|+++|..+.| ++..+|+||.|.+|.||.+..+....... ++...+.+|...|--++|+|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-------------epvv~L~gH~rrVg~V~wHPt 142 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-------------EPVVELYGHQRRVGLVQWHPT 142 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-------------cceEEEeecceeEEEEeeccc
Confidence 45789999999977 57799999999999999998765544322 222356899999999999995
Q ss_pred -CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccC
Q 038537 101 -EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ 179 (358)
Q Consensus 101 -~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 179 (358)
.+.|++++.|.+|.+||+.+++ .+.++. |...|.+++|+.+|.+|++.+.|..|+|||.++++...+- .+|.
T Consensus 143 A~NVLlsag~Dn~v~iWnv~tge--ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~----~~he 215 (472)
T KOG0303|consen 143 APNVLLSAGSDNTVSIWNVGTGE--ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG----VAHE 215 (472)
T ss_pred chhhHhhccCCceEEEEeccCCc--eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec----cccc
Confidence 4688999999999999999998 666666 9999999999999999999999999999999877643332 3343
Q ss_pred C-ceeEEEEeecCCCcEEEEee---cCCcEEEEEccCCcCCccccceeecccceeEE-EeeeCCEEE-EeeCCCeEEEEE
Q 038537 180 S-SVNALALSSFFDNYFLYSGS---SDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC-LVAIEKLIF-SGSEDTTIRVWR 253 (358)
Q Consensus 180 ~-~i~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~-~~~~dg~i~iwd 253 (358)
+ ....+.|.. ++..+.+|- .+..+.+||....+.+.... .+....+-..- +.++.+.++ +|-.|+.||.|.
T Consensus 216 G~k~~Raifl~--~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~-elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 216 GAKPARAIFLA--SGKIFTTGFSRMSERQIALWDPNNLEEPIALQ-ELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred CCCcceeEEec--cCceeeeccccccccceeccCcccccCcceeE-EeccCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 2 233344444 677555553 37889999988765543222 23333332222 345556655 555899999999
Q ss_pred cCCCceeeeeeeeecCcccceEEEEeecc
Q 038537 254 RAEGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
+.........+.++. ...+-.+|.|-|.
T Consensus 293 it~d~P~~hyln~f~-S~epQRG~g~mPK 320 (472)
T KOG0303|consen 293 ITNEPPFVHYLNTFS-SKEPQRGMGFMPK 320 (472)
T ss_pred ecCCCceeEEecccc-cCCcccccccccc
Confidence 988753233344432 2345566667665
No 167
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=3.8e-20 Score=154.06 Aligned_cols=246 Identities=11% Similarity=0.054 Sum_probs=162.7
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccc-eEEEEecCCEEEE-EeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGE-VRAILAHDNMLFT-TNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~-v~~i~~~~~~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
+++++.++.|++||..+++....+..+... ..++.++++.+++ ++.++.|++||+.+.+.+...
T Consensus 46 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~-------------- 111 (300)
T TIGR03866 46 YVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI-------------- 111 (300)
T ss_pred EEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe--------------
Confidence 356778999999999998887766654432 2233446666654 456899999999875543211
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCC-eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEE-eCCCcE
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDK-TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC-SSDGSV 157 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i 157 (358)
.+...+.+++|+|++..+++++.++ .+.+||..+.+ ...... ....+.+++|+|+++.++++ ..++.|
T Consensus 112 -------~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~--~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v 181 (300)
T TIGR03866 112 -------PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE--IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTV 181 (300)
T ss_pred -------eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe--EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEE
Confidence 1122367899999999999888765 56778987765 333222 23356789999999988655 458999
Q ss_pred EEEEceecCCcceeeeeecc-c--CCceeEEEEeecCCCcEEEE-eecCCcEEEEEccCCcCCccccceeecccceeEEE
Q 038537 158 KIWRRVYRENSHTLTMTLKF-Q--QSSVNALALSSFFDNYFLYS-GSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL 233 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~-~--~~~i~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 233 (358)
++||+.+++....+...... + ......++++| +++++++ .+.++.+.+||+++.+... ....++.....++
T Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~--dg~~~~~~~~~~~~i~v~d~~~~~~~~---~~~~~~~~~~~~~ 256 (300)
T TIGR03866 182 SVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK--DGKTAFVALGPANRVAVVDAKTYEVLD---YLLVGQRVWQLAF 256 (300)
T ss_pred EEEEcCcceeeeeeeecccccccccCCccceEECC--CCCEEEEEcCCCCeEEEEECCCCcEEE---EEEeCCCcceEEE
Confidence 99999766533322211100 1 11234677887 8887544 4556789999997633211 1122344445677
Q ss_pred eeeCCEEEEe-eCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeec
Q 038537 234 VAIEKLIFSG-SEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASL 281 (358)
Q Consensus 234 ~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 281 (358)
+|++++|+++ +.+|.|++||+.++ +.+..++.. ...++++++|
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~----~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAAL----KVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCC----cEEEEEEcc-cccceeEeCC
Confidence 8899998876 46899999999998 555666544 4448888765
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=2.6e-20 Score=141.29 Aligned_cols=275 Identities=17% Similarity=0.213 Sum_probs=193.0
Q ss_pred CCCcEEEEeCCCc--ee-eeeeeecccceEEEEe---cCCEEEEEeCC-------ceEEEEecccccccccccccccCCC
Q 038537 7 SSTRIRVWRQPDC--VE-RGFIKARHGEVRAILA---HDNMLFTTNKD-------CKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 7 ~dg~v~vw~~~~~--~~-~~~~~~h~~~v~~i~~---~~~~l~s~~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
.|..|.+.++... .. -..+..|.+.|..++. +...|+++..+ -.+.||.+.........
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-------- 109 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-------- 109 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc--------
Confidence 3566776665432 22 2456677889998865 56677777542 24679998754332110
Q ss_pred ceeeeecCCCccc-cCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccc-----cccccCeEEEEEcC--CC
Q 038537 74 SSFLSFSKSNTQQ-QHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF-----VAHESNVNAIVVNQ--DD 145 (358)
Q Consensus 74 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~--~~ 145 (358)
..++....+. .+-+.|.|+.|.|++..+++-. |..|.+|++..... .+..+ ..+....++-+|+| ++
T Consensus 110 ---~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~-~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 110 ---STLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSK-IVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred ---chhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcc-hheeecccccccccceecccccCCCCcc
Confidence 0111111222 4555899999999999998876 78899999987652 12222 13456678889999 67
Q ss_pred CEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec
Q 038537 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG 225 (358)
Q Consensus 146 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 225 (358)
+.+++ ..|+++..||+++..... ....+|...+..+.|+| ....+|++|+.||.|++||.+..+. ....+.+
T Consensus 185 nqv~t-t~d~tl~~~D~RT~~~~~---sI~dAHgq~vrdlDfNp-nkq~~lvt~gDdgyvriWD~R~tk~---pv~el~~ 256 (370)
T KOG1007|consen 185 NQVAT-TSDSTLQFWDLRTMKKNN---SIEDAHGQRVRDLDFNP-NKQHILVTCGDDGYVRIWDTRKTKF---PVQELPG 256 (370)
T ss_pred ceEEE-eCCCcEEEEEccchhhhc---chhhhhcceeeeccCCC-CceEEEEEcCCCccEEEEeccCCCc---cccccCC
Confidence 77666 468999999998665433 34467888999999999 2355788999999999999998543 3344778
Q ss_pred ccceeEEEeee---CCEEEEeeCCCeEEEEEcCCCce-------------------------eeeeeeeecCcccceEEE
Q 038537 226 HCFAVLCLVAI---EKLIFSGSEDTTIRVWRRAEGGC-------------------------YHECLAVLDGHRGPVRCL 277 (358)
Q Consensus 226 ~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~-------------------------~~~~~~~~~~h~~~v~~i 277 (358)
|.-.+.++.++ .++|++|+.|..|.+|-...-.. .-..+.++..|...|.++
T Consensus 257 HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~ 336 (370)
T KOG1007|consen 257 HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYAL 336 (370)
T ss_pred CceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEE
Confidence 88888777654 58999999999999997543210 112345677899999999
Q ss_pred EeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 278 AASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 278 ~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
+|+.-.| -.+|+-|.||.+.|=.+.
T Consensus 337 aWSsadP-----WiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 337 AWSSADP-----WIFASLSYDGRVIISSVP 361 (370)
T ss_pred eeccCCC-----eeEEEeccCceEEeecCC
Confidence 9998754 688999999999987665
No 169
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.3e-22 Score=176.48 Aligned_cols=210 Identities=18% Similarity=0.199 Sum_probs=158.1
Q ss_pred CCCceEEEEEeCCCCE----EEEEecCCeEEEEEccC----CcccccccccccccCeEEEEEcCC-CCEEEEEeCCCcEE
Q 038537 88 HRDCVSCMAFYHAEGL----LYTGSFDKTVKAWRVLD----KRCTCVDSFVAHESNVNAIVVNQD-DGFVFTCSSDGSVK 158 (358)
Q Consensus 88 h~~~v~~~~~~~~~~~----l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~ 158 (358)
-..+.+.++|.+.+.. |+.|..||.|.+||... .+...+.....|++.|..+.|++. ++.|++|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3455788999887654 88899999999999764 333456677889999999999995 45999999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeC-
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE- 237 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 237 (358)
|||+...+...... .......|.+++|+. .....|++++.+|.+.|||++..+....+..........++.++|+.
T Consensus 143 iWDlnn~~tP~~~~--~~~~~~eI~~lsWNr-kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPG--SQAPPSEIKCLSWNR-KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHA 219 (1049)
T ss_pred EeccCCcCCCCCCC--CCCCcccceEeccch-hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCc
Confidence 99997543322221 223467899999986 34678999999999999999985433332221111223456666654
Q ss_pred CEEEEeeCCC---eEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 238 KLIFSGSEDT---TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 238 ~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
..|+++++|. .|.+||++... .+++++.+|...|.+|.|++.. ..+|+|++.|+.|.+|+.++
T Consensus 220 Tql~~As~dd~~PviqlWDlR~as---sP~k~~~~H~~GilslsWc~~D-----~~lllSsgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFAS---SPLKILEGHQRGILSLSWCPQD-----PRLLLSSGKDNRIICWNPNT 285 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccC---CchhhhcccccceeeeccCCCC-----chhhhcccCCCCeeEecCCC
Confidence 4555555443 59999998764 5778889999999999999983 37999999999999999985
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=2.2e-20 Score=143.85 Aligned_cols=255 Identities=18% Similarity=0.281 Sum_probs=178.6
Q ss_pred EecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCcc-ccCCCceEEEEEe-------CCCCEEEEE
Q 038537 36 LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQ-QQHRDCVSCMAFY-------HAEGLLYTG 107 (358)
Q Consensus 36 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~-------~~~~~l~~~ 107 (358)
+++|..|++-+.|..+.+|++.....-...... +.++....+ ......|..-+|- |+..++++.
T Consensus 58 SPDGSciL~~sedn~l~~~nlP~dlys~~~~~~--------~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 58 SPDGSCILSLSEDNCLNCWNLPFDLYSKKADGP--------LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred CCCCceEEeecccCeeeEEecChhhcccCCCCc--------cccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 558899999999999999998743221110000 000010111 1223446666664 567789999
Q ss_pred ecCCeEEEEEccCCccccccccccccc---CeEEEEEcCCCCEEEEEeCCCcEEEEEc-eecCCcceeeeee---cccCC
Q 038537 108 SFDKTVKAWRVLDKRCTCVDSFVAHES---NVNAIVVNQDDGFVFTCSSDGSVKIWRR-VYRENSHTLTMTL---KFQQS 180 (358)
Q Consensus 108 ~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~~wd~-~~~~~~~~~~~~~---~~~~~ 180 (358)
+.+.-|++||.-+++.........|.. ...+++|+|||..|++|. ...|++||+ +.+.......... .+..+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 999999999999998544433334443 456899999999998874 678999999 4443322222211 23467
Q ss_pred ceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEE--EeeeCCEEEEee-CCCeEEEEEcCCC
Q 038537 181 SVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGS-EDTTIRVWRRAEG 257 (358)
Q Consensus 181 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~-~dg~i~iwd~~~~ 257 (358)
.+.+++++| .+...++.|+....+-||.-... .....+.+|...|+. +.++|+.|++|. .|-.|..||++..
T Consensus 209 iisc~a~sP-~~~~~~a~gsY~q~~giy~~~~~----~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 209 IISCFAFSP-MDSKTLAVGSYGQRVGIYNDDGR----RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred eeeeeeccC-CCCcceeeecccceeeeEecCCC----CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 889999999 46679999999999999876663 333446688888755 556899999988 5778999999987
Q ss_pred ceeeeeeeeecCccc-ceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCC
Q 038537 258 GCYHECLAVLDGHRG-PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPD 311 (358)
Q Consensus 258 ~~~~~~~~~~~~h~~-~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 311 (358)
. .++..+..|.+ .-..|.|.-+.. +++|++|+.||.|++||++...+
T Consensus 284 ~---~pv~~L~rhv~~TNQRI~FDld~~----~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 284 R---DPVYALERHVGDTNQRILFDLDPK----GEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred c---chhhhhhhhccCccceEEEecCCC----CceeeccCCCccEEEEecCCCCC
Confidence 4 67888888876 444556654433 89999999999999999987544
No 171
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.5e-19 Score=132.83 Aligned_cols=273 Identities=13% Similarity=0.188 Sum_probs=188.3
Q ss_pred CEEeeeCCCcEEEEeCCC----------ceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccc-cccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPD----------CVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDN-FRTKKVTT 69 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~----------~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~ 69 (358)
+|++|+.+|.|.+..+.. ...+-..++|.++|..+.+.+.+|++|+. |.|+-|..+.... .....+-.
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe 102 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWE 102 (325)
T ss_pred EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhh
Confidence 588999999999998742 22344558999999999999999999885 9999998765432 11111100
Q ss_pred cCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEE
Q 038537 70 LPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVF 149 (358)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 149 (358)
.. .+.+.-.-.-..|+++...|..+-++.++.|+.++-||+++++ ..+.+++|++.|.++.--.....++
T Consensus 103 ~~--------~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~--i~r~~rGHtDYvH~vv~R~~~~qil 172 (325)
T KOG0649|consen 103 VK--------IPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR--IQREYRGHTDYVHSVVGRNANGQIL 172 (325)
T ss_pred hc--------CccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE--EEEEEcCCcceeeeeeecccCccee
Confidence 00 0000001122358999999988777778899999999999999 7888999999999999866667899
Q ss_pred EEeCCCcEEEEEceecCCcceeeee-----eccc-CCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccccee
Q 038537 150 TCSSDGSVKIWRRVYRENSHTLTMT-----LKFQ-QSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFL 223 (358)
Q Consensus 150 ~~~~dg~i~~wd~~~~~~~~~~~~~-----~~~~-~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 223 (358)
+|++||++|+||+++++....+... ++.| ...|-+++. +..++++|+ ...+.+|.++..+....
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~----~edWlvCGg-Gp~lslwhLrsse~t~v----- 242 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV----NEDWLVCGG-GPKLSLWHLRSSESTCV----- 242 (325)
T ss_pred ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec----cCceEEecC-CCceeEEeccCCCceEE-----
Confidence 9999999999999888755443221 1112 234566665 567887775 46799999998443222
Q ss_pred ecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 224 QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
-.-+..+..+.+..+.++++++.+.|.-|.+..- .-..........++..|+... -++|..++....+.|
T Consensus 243 fpipa~v~~v~F~~d~vl~~G~g~~v~~~~l~Gv-----l~a~ip~~s~~c~s~s~~~~p-----~k~~s~ag~s~~~~i 312 (325)
T KOG0649|consen 243 FPIPARVHLVDFVDDCVLIGGEGNHVQSYTLNGV-----LQANIPVESTACYSASWQTSP-----IKFISIAGFSNKLHI 312 (325)
T ss_pred EecccceeEeeeecceEEEeccccceeeeeeccE-----EEEeccCCccceeeecccCCc-----eEEEEecccceeeee
Confidence 2234456667788899999998889999988653 222222333344555555431 357777777777776
Q ss_pred E
Q 038537 304 W 304 (358)
Q Consensus 304 w 304 (358)
+
T Consensus 313 ~ 313 (325)
T KOG0649|consen 313 L 313 (325)
T ss_pred e
Confidence 5
No 172
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=8.4e-21 Score=159.57 Aligned_cols=258 Identities=14% Similarity=0.187 Sum_probs=198.2
Q ss_pred CCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCcc
Q 038537 8 STRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQ 85 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (358)
+..+.+||...|.....+++|...|.++++ +|+.+++|+.|..|.+|+-.-...++
T Consensus 32 g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk---------------------- 89 (1081)
T KOG1538|consen 32 GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK---------------------- 89 (1081)
T ss_pred CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee----------------------
Confidence 356999999999999999999999999987 78999999999999999865433322
Q ss_pred ccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceec
Q 038537 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYR 165 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 165 (358)
..|.+.|.|+.|+|-...|++++-+ ..-+|...... +... .....|.+++|..||++++.|-.+|+|.+-+-. +
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~---V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-g 163 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS---VSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-G 163 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchh-hccccChhhhh---HHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCC-C
Confidence 5799999999999999999998874 47788876554 2222 235678999999999999999999999987532 2
Q ss_pred CCcceeeeeecccCCceeEEEEeecC---CCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEE
Q 038537 166 ENSHTLTMTLKFQQSSVNALALSSFF---DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFS 242 (358)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (358)
+. ........+.+++|++++|+|.. ....+++.....++.+|.+....-... ...+....+....++|.+++.
T Consensus 164 Ee-k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~---r~L~FdP~CisYf~NGEy~Li 239 (1081)
T KOG1538|consen 164 EE-KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKD---RALNFDPCCISYFTNGEYILL 239 (1081)
T ss_pred Cc-ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeeccc---ccCCCCchhheeccCCcEEEE
Confidence 22 22233445578899999999842 235788888888899888775111000 011111223344578999999
Q ss_pred eeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 243 GSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 243 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
|+.|+.+.+|.-.. -.+.++......|..++..|+ ++.++.|+.||+|..|++-.
T Consensus 240 GGsdk~L~~fTR~G-----vrLGTvg~~D~WIWtV~~~PN------sQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 240 GGSDKQLSLFTRDG-----VRLGTVGEQDSWIWTVQAKPN------SQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ccCCCceEEEeecC-----eEEeeccccceeEEEEEEccC------CceEEEEEccCeeehhhhHH
Confidence 99999999997554 356677677889999999999 88999999999999999753
No 173
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.87 E-value=1.2e-18 Score=146.55 Aligned_cols=276 Identities=10% Similarity=0.172 Sum_probs=172.2
Q ss_pred EeeeCCCcEEEEeCCC-ce--eeeeeeecccceE--EEEecCCEEEEEe-CCceEEEEecccccccccccccccCCCcee
Q 038537 3 FTGSSSTRIRVWRQPD-CV--ERGFIKARHGEVR--AILAHDNMLFTTN-KDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 3 ~tg~~dg~v~vw~~~~-~~--~~~~~~~h~~~v~--~i~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
++...++.|++|++.+ ++ .+..+.. .+... ++++++++|++++ .++.|.+|+++....+.....
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~--------- 75 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAE--------- 75 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeee---------
Confidence 4557789999999964 32 3444432 23333 4455788877664 588999999873221111100
Q ss_pred eeecCCCccccCCCceEEEEEeCCCCEEEEEec-CCeEEEEEccCCc-c-cccccccccccCeEEEEEcCCCCEEEEEe-
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF-DKTVKAWRVLDKR-C-TCVDSFVAHESNVNAIVVNQDDGFVFTCS- 152 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 152 (358)
.........++++|++++|++++. ++.|.+|++.+.. . ..+..+ .+.....+++++|+++++++++
T Consensus 76 ---------~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~ 145 (330)
T PRK11028 76 ---------SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCL 145 (330)
T ss_pred ---------ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeC
Confidence 011223568999999998888764 7899999997432 1 112222 2234567889999999886555
Q ss_pred CCCcEEEEEceecCCcce---eeeeecccCCceeEEEEeecCCCcEEEEeec-CCcEEEEEccCCcCCccccceeecc--
Q 038537 153 SDGSVKIWRRVYRENSHT---LTMTLKFQQSSVNALALSSFFDNYFLYSGSS-DGSINFWEKDKMSGGFNHGGFLQGH-- 226 (358)
Q Consensus 153 ~dg~i~~wd~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~-- 226 (358)
.++.|.+||+.+...... ..... ........++|+| ++++++++.. ++.|.+|++................
T Consensus 146 ~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~p--dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~ 222 (330)
T PRK11028 146 KEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHP--NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA 222 (330)
T ss_pred CCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECC--CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC
Confidence 569999999975322111 00111 1234567889998 9999888876 8999999997422222221111111
Q ss_pred ----c--ceeEEEeeeCCEEEEee-CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEcc-CC
Q 038537 227 ----C--FAVLCLVAIEKLIFSGS-EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSS-LD 298 (358)
Q Consensus 227 ----~--~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~-~d 298 (358)
. ..-..++|++++++++. .++.|.+|++.......+.+...... .....+.++|+ |++|+++. .+
T Consensus 223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~d------g~~l~va~~~~ 295 (330)
T PRK11028 223 DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHS------GKYLIAAGQKS 295 (330)
T ss_pred cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCC------CCEEEEEEccC
Confidence 1 11256789999998885 47899999996543212333333221 24467899999 77777655 48
Q ss_pred CcEEEEEeee
Q 038537 299 QTFKVWRVKV 308 (358)
Q Consensus 299 g~v~iw~~~~ 308 (358)
++|.+|+++.
T Consensus 296 ~~v~v~~~~~ 305 (330)
T PRK11028 296 HHISVYEIDG 305 (330)
T ss_pred CcEEEEEEcC
Confidence 9999999863
No 174
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=2.4e-20 Score=141.54 Aligned_cols=213 Identities=18% Similarity=0.170 Sum_probs=161.8
Q ss_pred ccCCCceEEEEEeCCCC-----EEEEEecCCeEEEEEccC--Ccccccccc-----cccccCeEEEEEcC-CCCEEEEEe
Q 038537 86 QQHRDCVSCMAFYHAEG-----LLYTGSFDKTVKAWRVLD--KRCTCVDSF-----VAHESNVNAIVVNQ-DDGFVFTCS 152 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~-----~l~~~~~dg~i~iwd~~~--~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~ 152 (358)
..|.-+++.+.|.|+.. +||+++ -.+|+|.+.. .+..+...+ ..+.+++++..|+. +.++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 46889999999999763 556544 4799999874 322222222 24567999999997 778999999
Q ss_pred CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEE
Q 038537 153 SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC 232 (358)
Q Consensus 153 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 232 (358)
-|-++.|||++++ ........+-+|..+|..++|.. ...+.|++.+.||.+++||++.......... ......+.+.
T Consensus 171 iDTTCTiWdie~~-~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE-~p~~~~pLlR 247 (364)
T KOG0290|consen 171 IDTTCTIWDIETG-VSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYE-DPSPSTPLLR 247 (364)
T ss_pred ccCeEEEEEEeec-cccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEec-CCCCCCccee
Confidence 9999999999876 23344566778999999999996 3467899999999999999998432211111 1111345566
Q ss_pred Eee---eCCEEEEeeCC-CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 233 LVA---IEKLIFSGSED-TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 233 ~~~---~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+++ +.+++|+-..| ..|.|.|++... .++..+++|.+.|++|+|.|.. ...|+|+|+|..+.+||+..
T Consensus 248 LswnkqDpnymATf~~dS~~V~iLDiR~P~---tpva~L~~H~a~VNgIaWaPhS-----~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 248 LSWNKQDPNYMATFAMDSNKVVILDIRVPC---TPVARLRNHQASVNGIAWAPHS-----SSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred eccCcCCchHHhhhhcCCceEEEEEecCCC---cceehhhcCcccccceEecCCC-----CceeeecCCcceEEEEeccc
Confidence 665 46788876655 569999999874 6889999999999999999985 47999999999999999997
Q ss_pred CCC
Q 038537 309 MPD 311 (358)
Q Consensus 309 ~~~ 311 (358)
.+.
T Consensus 320 ~~~ 322 (364)
T KOG0290|consen 320 MPR 322 (364)
T ss_pred ccc
Confidence 654
No 175
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.4e-19 Score=143.03 Aligned_cols=284 Identities=14% Similarity=0.153 Sum_probs=198.7
Q ss_pred CEEeeeCCCcEEEEeCC------Cceeeeeeee-cccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccC
Q 038537 1 MVFTGSSSTRIRVWRQP------DCVERGFIKA-RHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLP 71 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~------~~~~~~~~~~-h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 71 (358)
+|++|+.|..+++|++. +.+++..... |...|.|+.|+ +..+++|+.+++|..-|+++.+.+.....
T Consensus 70 ~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~---- 145 (609)
T KOG4227|consen 70 FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANE---- 145 (609)
T ss_pred EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecc----
Confidence 58999999999999974 4455555544 45889999996 56899999999999999998776533221
Q ss_pred CCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccc-cccccccccCeEEEEEcC-CCCEEE
Q 038537 72 RRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTC-VDSFVAHESNVNAIVVNQ-DDGFVF 149 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~ 149 (358)
....+.|..+..+|..+.|++.+.++.|.+||.+...... ...+.........+.|+| ...+|+
T Consensus 146 --------------~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~ 211 (609)
T KOG4227|consen 146 --------------NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALIL 211 (609)
T ss_pred --------------cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEE
Confidence 2334589999999999999999999999999998765111 112223456678899999 456788
Q ss_pred EEeCCCcEEEEEceecCCcceeeeeeccc---CCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccc-eeec
Q 038537 150 TCSSDGSVKIWRRVYRENSHTLTMTLKFQ---QSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGG-FLQG 225 (358)
Q Consensus 150 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~ 225 (358)
+.+..+-+-+||++.............+. ...-..+.|+| +|++|.+--....-.+||+-+......... ...+
T Consensus 212 ~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~--~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 212 VNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP--SGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred eccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC--CCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 88889999999997654322111111111 22346778888 899998887777778888876221111000 0001
Q ss_pred c--cceeEEEee-eCCEEEEeeCCCeEEEEEcCCCc-------------------eeeeeeeeecCcccceEEEEeeccc
Q 038537 226 H--CFAVLCLVA-IEKLIFSGSEDTTIRVWRRAEGG-------------------CYHECLAVLDGHRGPVRCLAASLEM 283 (358)
Q Consensus 226 ~--~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~-------------------~~~~~~~~~~~h~~~v~~i~~~~~~ 283 (358)
. ...+.++.+ +..-+++|+.+-.|++|.+.... .+...+..+++|..-++.+.|+|.
T Consensus 290 Y~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H- 368 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH- 368 (609)
T ss_pred ceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCC-
Confidence 0 112223333 33458999999999999875321 122456788999999999999999
Q ss_pred ceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 284 EKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 284 ~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
..+|++.+-...++||.-..++
T Consensus 369 -----~~~l~SSGVE~~~KlWS~~r~P 390 (609)
T KOG4227|consen 369 -----NNLLVSSGVENSFKLWSDHRLP 390 (609)
T ss_pred -----cceEeccchhhheeccccccCC
Confidence 7799999999999999765443
No 176
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=2e-19 Score=142.55 Aligned_cols=282 Identities=18% Similarity=0.225 Sum_probs=192.7
Q ss_pred ccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEE
Q 038537 29 HGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLY 105 (358)
Q Consensus 29 ~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 105 (358)
..+|..+.+. .+.++||+.|..|++|.+.....-... ........+..|...|+++.|+|+|.+|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-----------~~V~y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-----------MKVEYLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-----------eeEEEeecccCCcceeEEEEEcCCcCeee
Confidence 3466666663 348999999999999999866543211 11222346789999999999999999999
Q ss_pred EEecCCeEEEEEcc--------C------CcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCccee
Q 038537 106 TGSFDKTVKAWRVL--------D------KRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTL 171 (358)
Q Consensus 106 ~~~~dg~i~iwd~~--------~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 171 (358)
+|+.+|.|.+|... + ..+.....+.+|...|..++|+|+++++++++.|..+++||+..+ .+
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G----~l 157 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG----QL 157 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc----ee
Confidence 99999999999865 2 123344556679999999999999999999999999999999544 45
Q ss_pred eeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccc-----------------ceeeccc----cee
Q 038537 172 TMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG-----------------GFLQGHC----FAV 230 (358)
Q Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-----------------~~~~~~~----~~~ 230 (358)
...+..|...+..++|.| -+.++++-+.|...+.+.+.......... ..+.... ..-
T Consensus 158 ~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 158 LAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred Eeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 667778999999999999 88899999998877777655422111110 0000000 112
Q ss_pred EEEeeeCCEEEEeeC----CC-----eEEEEEcCCCceeeeeeeeecCcccceEEEEeecccce----e--------eeC
Q 038537 231 LCLVAIEKLIFSGSE----DT-----TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEK----V--------VMG 289 (358)
Q Consensus 231 ~~~~~~~~~l~~~~~----dg-----~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~----~--------~~~ 289 (358)
.+++|+|.++++... .+ ..++|+-... .++...+.....++..+.|+|-.-. . .-+
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l---~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL---KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccc---cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccc
Confidence 567788888887541 22 2355544432 3677777777777888887762100 0 002
Q ss_pred eEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCCccceeeecccCCCcccccccchh
Q 038537 290 FLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNSKTTTTKMDYEMSPVLSPSWVEK 349 (358)
Q Consensus 290 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~W~~~ 349 (358)
..++.++.+ .|.|||-+... ......+.|.++++.+.|+++
T Consensus 313 lvfaiAt~~-svyvydtq~~~------------------P~~~v~nihy~~iTDiaws~d 353 (434)
T KOG1009|consen 313 LVFAIATKN-SVYVYDTQTLE------------------PLAVVDNIHYSAITDIAWSDD 353 (434)
T ss_pred eEEEEeecc-eEEEecccccc------------------ceEEEeeeeeeeecceeecCC
Confidence 345555554 89999987431 123344556667888888776
No 177
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.3e-18 Score=149.12 Aligned_cols=325 Identities=13% Similarity=0.190 Sum_probs=210.0
Q ss_pred eeCCCcEEEEeCCCceeeeeeeecccceEEEEec---C--CEEEEEeCCceEEEEecccccccccccccccC--------
Q 038537 5 GSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH---D--NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLP-------- 71 (358)
Q Consensus 5 g~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~---~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-------- 71 (358)
+..+..|.||...+++++..+.+|..++..+... . .++++++.||.|++||...+..++.+......
T Consensus 33 ~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~ 112 (792)
T KOG1963|consen 33 LCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPA 112 (792)
T ss_pred EeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechh
Confidence 4455789999999999999999999999988663 2 57889999999999998877665432211000
Q ss_pred --C-Ccee----------e-----------------------------------eecCC---------------------
Q 038537 72 --R-RSSF----------L-----------------------------------SFSKS--------------------- 82 (358)
Q Consensus 72 --~-~~~~----------~-----------------------------------~~~~~--------------------- 82 (358)
. +... . .....
T Consensus 113 ~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~ 192 (792)
T KOG1963|consen 113 QADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHT 192 (792)
T ss_pred HhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccc
Confidence 0 0000 0 00000
Q ss_pred ------CccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccC--CcccccccccccccCeEEEEEcCCCCEEEEEeCC
Q 038537 83 ------NTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLD--KRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 83 ------~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 154 (358)
..-..|.-.++|.++||+++++++|..||.|.+|.--. +.......+.-|..+|++++|+++|.+|++|+.+
T Consensus 193 ~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E 272 (792)
T KOG1963|consen 193 KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGRE 272 (792)
T ss_pred eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccc
Confidence 01123556689999999999999999999999996433 2222345566789999999999999999999999
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccccee---------ec
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFL---------QG 225 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~ 225 (358)
|.+.+|.+.+++. ++. ....++|..+.++| ++.+.+....|..|.+....++.......... ..
T Consensus 273 ~VLv~Wq~~T~~k--qfL---PRLgs~I~~i~vS~--ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~ 345 (792)
T KOG1963|consen 273 GVLVLWQLETGKK--QFL---PRLGSPILHIVVSP--DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQ 345 (792)
T ss_pred eEEEEEeecCCCc--ccc---cccCCeeEEEEEcC--CCCeEEEEecCceEEEEeccchhhhhhccCccCCCcccccccc
Confidence 9999999987762 222 22478999999998 99999999999999999875532111110000 00
Q ss_pred ccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCce----------------------------------------------
Q 038537 226 HCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGC---------------------------------------------- 259 (358)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------------------------- 259 (358)
.-....+++|..+.++-.+..|.|.+||+.+...
T Consensus 346 ~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~ 425 (792)
T KOG1963|consen 346 SLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNF 425 (792)
T ss_pred ccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhc
Confidence 0112234444444455555555555555443221
Q ss_pred -----------------eeeee-eeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccc
Q 038537 260 -----------------YHECL-AVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYS 321 (358)
Q Consensus 260 -----------------~~~~~-~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~ 321 (358)
.+.+. ....+|...+...++.+... ...++++|.||.++||-+...++..+.
T Consensus 426 ~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~r----s~~~vta~~dg~~KiW~~~~~~n~~k~------ 495 (792)
T KOG1963|consen 426 FDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTR----SVRCVTASVDGDFKIWVFTDDSNIYKK------ 495 (792)
T ss_pred cCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcc----cceeEEeccCCeEEEEEEecccccCcC------
Confidence 11111 12235666666666655432 338999999999999999654333221
Q ss_pred cCCCCccceeeecccCCCcccccccchh
Q 038537 322 DYHSNSKTTTTKMDYEMSPVLSPSWVEK 349 (358)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~v~s~~W~~~ 349 (358)
.....-...-.|+..|+.+..|+++
T Consensus 496 ---~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 496 ---SSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred ---ccceEEeeeeccccCcccchhhcCC
Confidence 1222222233367777777777664
No 178
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.84 E-value=6e-19 Score=157.71 Aligned_cols=286 Identities=15% Similarity=0.201 Sum_probs=181.9
Q ss_pred CEEeeeCCCcEEEEeCCC-------ceeeeeeeecccceEEE--EecCCEEEEEeCCceEEEEecccccccccccccccC
Q 038537 1 MVFTGSSSTRIRVWRQPD-------CVERGFIKARHGEVRAI--LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLP 71 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~-------~~~~~~~~~h~~~v~~i--~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 71 (358)
+++|||.||+|++||... .+...++......+.++ ...++.+|.++.||.|++.+++............
T Consensus 1063 ~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~-- 1140 (1431)
T KOG1240|consen 1063 LFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQV-- 1140 (1431)
T ss_pred eEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeee--
Confidence 589999999999999752 12223333345556665 4578899999999999999998631111000000
Q ss_pred CCceeeeecCCCccccCCCceEEEEEeC-CCC-EEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEE
Q 038537 72 RRSSFLSFSKSNTQQQHRDCVSCMAFYH-AEG-LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVF 149 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 149 (358)
..........-|.+-+|.. .+. .|+.+..-+.|..||++...-.-........+.|++++.+|.++.++
T Consensus 1141 ---------ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~Wlv 1211 (1431)
T KOG1240|consen 1141 ---------RIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLV 1211 (1431)
T ss_pred ---------ecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEE
Confidence 0001111222233444433 233 78888889999999998766222233344567899999999999999
Q ss_pred EEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCC--CcEEEEee-cCCcEEEEEccCCcCCccccce----
Q 038537 150 TCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFD--NYFLYSGS-SDGSINFWEKDKMSGGFNHGGF---- 222 (358)
Q Consensus 150 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~---- 222 (358)
.|+..|.+.+||++.+........ .+..++..+..+|.+. .-.+.+++ ..+.|.+|++.++.....+...
T Consensus 1212 iGts~G~l~lWDLRF~~~i~sw~~---P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p 1288 (1431)
T KOG1240|consen 1212 IGTSRGQLVLWDLRFRVPILSWEH---PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAP 1288 (1431)
T ss_pred EecCCceEEEEEeecCceeecccC---cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCc
Confidence 999999999999987654333222 2447888888887543 33344444 5788999999885432211100
Q ss_pred -----ee-------cc-cceeEEEeeeCCEEEEeeCCCeEEEEEcCCCcee-----------------------------
Q 038537 223 -----LQ-------GH-CFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCY----------------------------- 260 (358)
Q Consensus 223 -----~~-------~~-~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------------------------- 260 (358)
.. +. .....++.-.+.++++|+.|..|+.||....+..
T Consensus 1289 ~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i 1368 (1431)
T KOG1240|consen 1289 ILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFI 1368 (1431)
T ss_pred chhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccc
Confidence 00 00 1111233334678999999999999997654321
Q ss_pred ee---------------ee--------eeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 261 HE---------------CL--------AVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 261 ~~---------------~~--------~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
.+ .. ..-..|..+|++|++.... ..+|++++.||.|+||.
T Consensus 1369 ~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~-----q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1369 DEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSE-----QPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccC-----ccEEEEecCCCeeeecC
Confidence 00 00 0112477889999888763 35899999999999994
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=2.2e-18 Score=127.90 Aligned_cols=241 Identities=15% Similarity=0.198 Sum_probs=172.4
Q ss_pred EEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeE
Q 038537 34 AILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTV 113 (358)
Q Consensus 34 ~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i 113 (358)
++++.+++|++|..+|.|.+..+.+...-... .+..... -..++|.++|..++|+ ..+|++|+. |.|
T Consensus 17 a~sp~~~~l~agn~~G~iav~sl~sl~s~sa~----~~gk~~i------v~eqahdgpiy~~~f~--d~~Lls~gd-G~V 83 (325)
T KOG0649|consen 17 AISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE----PPGKLKI------VPEQAHDGPIYYLAFH--DDFLLSGGD-GLV 83 (325)
T ss_pred hhCCcceEEEEecCCCeEEEEEehhhhccccC----CCCCcce------eeccccCCCeeeeeee--hhheeeccC-ceE
Confidence 56677899999999999999998754322111 1111111 1337999999999997 456777665 999
Q ss_pred EEEEccCCcc----ccccc--ccccc-----cCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCce
Q 038537 114 KAWRVLDKRC----TCVDS--FVAHE-----SNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSV 182 (358)
Q Consensus 114 ~iwd~~~~~~----~~~~~--~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i 182 (358)
+-|..+.... +.+-. ...|. ..|+++...|..+-++.++.|+.++.||++++ ++.+.+++|...+
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G----~i~r~~rGHtDYv 159 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDG----RIQREYRGHTDYV 159 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCC----EEEEEEcCCccee
Confidence 9998754321 01111 11122 36889999998888888889999999999554 5778889999999
Q ss_pred eEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcc-----ccceeeccc-ceeEEEeeeCCEEEEeeCCCeEEEEEcCC
Q 038537 183 NALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFN-----HGGFLQGHC-FAVLCLVAIEKLIFSGSEDTTIRVWRRAE 256 (358)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 256 (358)
.++.-.. ....+++|++||++++||.++.+.... ....+..|. ..+-++..+..++++|+. ..+.+|.++.
T Consensus 160 H~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrs 236 (325)
T KOG0649|consen 160 HSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRS 236 (325)
T ss_pred eeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccC
Confidence 9999855 567899999999999999998553322 222233333 346788889999999875 4599999999
Q ss_pred CceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 257 GGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 257 ~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
.+. ...+ .-.+++..+.|..+ .+++++....|.-|.+.
T Consensus 237 se~----t~vf-pipa~v~~v~F~~d--------~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 237 SES----TCVF-PIPARVHLVDFVDD--------CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred CCc----eEEE-ecccceeEeeeecc--------eEEEeccccceeeeeec
Confidence 843 3333 23456788888865 78888888899999875
No 180
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.2e-19 Score=149.63 Aligned_cols=247 Identities=18% Similarity=0.235 Sum_probs=163.3
Q ss_pred EEeeeCCCcEEEEeCC--------CceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccC
Q 038537 2 VFTGSSSTRIRVWRQP--------DCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLP 71 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~--------~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 71 (358)
|++++.||+|++|++. .-+++.++.+|.++|.|+.. ++.++++|+.||+|+.|++....... ...
T Consensus 309 lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~--ds~--- 383 (577)
T KOG0642|consen 309 LITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPD--DSY--- 383 (577)
T ss_pred EEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcc--ccc---
Confidence 7899999999999993 24577889999999999866 68899999999999999876221110 000
Q ss_pred CCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccc--cccCeEEEEEcCCC-CEE
Q 038537 72 RRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA--HESNVNAIVVNQDD-GFV 148 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-~~l 148 (358)
-.......+.||.+.|+.+++|+....|++++.||+++.|+..... + .++.. ..+.-.++.+-... ...
T Consensus 384 -----dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~--~-~~f~~~~e~g~Plsvd~~ss~~a~~ 455 (577)
T KOG0642|consen 384 -----DPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEES--P-CTFGEPKEHGYPLSVDRTSSRPAHS 455 (577)
T ss_pred -----CcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcC--c-cccCCccccCCcceEeeccchhHhh
Confidence 0011124668999999999999999999999999999999987766 2 23322 22333455554322 122
Q ss_pred EEEeCCCcEEEEEceecCCcceeeeee---cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec
Q 038537 149 FTCSSDGSVKIWRRVYRENSHTLTMTL---KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG 225 (358)
Q Consensus 149 ~~~~~dg~i~~wd~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 225 (358)
++...-+.-.++++........+.... ......+.-+...| ...+.+++..|+.|+++|..++. .......
T Consensus 456 ~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~--~~~~~~~~hed~~Ir~~dn~~~~----~l~s~~a 529 (577)
T KOG0642|consen 456 LASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP--TADITFTAHEDRSIRFFDNKTGK----ILHSMVA 529 (577)
T ss_pred hhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC--CCCeeEecccCCceecccccccc----cchheee
Confidence 222222222233332221111111100 01123466677777 78999999999999999988843 3333455
Q ss_pred cccee--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcc
Q 038537 226 HCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHR 271 (358)
Q Consensus 226 ~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~ 271 (358)
|...+ .++.+++.+|++++.|+.+++|.+... .++.....|.
T Consensus 530 ~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k----~~~~es~~~r 573 (577)
T KOG0642|consen 530 HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK----TCVLESTAHR 573 (577)
T ss_pred ccceecceeecCCCceEEeecCCceeehhhccch----heeecccccc
Confidence 55555 455678999999999999999999776 3444444443
No 181
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=4.3e-21 Score=164.86 Aligned_cols=244 Identities=19% Similarity=0.299 Sum_probs=188.0
Q ss_pred eeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC
Q 038537 22 RGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99 (358)
Q Consensus 22 ~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 99 (358)
++.+.+|...|.|..+| +.++++|+.|..++||..++..++. ...||.+.|+.++.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA--------------------s~rGhs~ditdlavs~ 242 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA--------------------SCRGHSGDITDLAVSS 242 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc--------------------cCCCCccccchhccch
Confidence 34567899999999996 7899999999999999988876653 4479999999999999
Q ss_pred CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecc-c
Q 038537 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKF-Q 178 (358)
Q Consensus 100 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-~ 178 (358)
+..++++++.|..|++|.+.++. ++..+.+|++.|++|+|+|-. +.+.||++++||.+-....... ...+. .
T Consensus 243 ~n~~iaaaS~D~vIrvWrl~~~~--pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~p-rp~~~~~ 315 (1113)
T KOG0644|consen 243 NNTMIAAASNDKVIRVWRLPDGA--PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVP-RPLKFTE 315 (1113)
T ss_pred hhhhhhhcccCceEEEEecCCCc--hHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCC-CCCCccc
Confidence 99999999999999999999998 899999999999999999955 6788999999998622111111 11111 2
Q ss_pred CCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCc
Q 038537 179 QSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 179 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 258 (358)
...+.++.+.. ++.-+++++.|+.-..|.+.......... ..+...+-...+.+++-.+-.+.+|++.++
T Consensus 316 ~~~~~s~~~~~--~~~~f~Tgs~d~ea~n~e~~~l~~~~~~l-------if~t~ssd~~~~~~~ar~~~~~~vwnl~~g- 385 (1113)
T KOG0644|consen 316 KDLVDSILFEN--NGDRFLTGSRDGEARNHEFEQLAWRSNLL-------IFVTRSSDLSSIVVTARNDHRLCVWNLYTG- 385 (1113)
T ss_pred ccceeeeeccc--cccccccccCCcccccchhhHhhhhccce-------EEEeccccccccceeeeeeeEeeeeecccc-
Confidence 34455666665 78889999999999888766521111110 001111112256677778888999999998
Q ss_pred eeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 259 CYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 259 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
.....+.+|...+..+.++|-++ ....+++.||...|||+-...
T Consensus 386 ---~l~H~l~ghsd~~yvLd~Hpfn~-----ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 386 ---QLLHNLMGHSDEVYVLDVHPFNP-----RIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred ---hhhhhhcccccceeeeeecCCCc-----HhhhhccCCCceEeeecccCC
Confidence 56788889999999999999854 677899999999999997543
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.83 E-value=2.4e-19 Score=141.71 Aligned_cols=212 Identities=17% Similarity=0.199 Sum_probs=154.2
Q ss_pred ccccCCCceEEEEEeC-CCCEEEEEecCCeEEEEEccCCcc-----cccccccccccCeEEEEEcC-CCCEEEEEeCCCc
Q 038537 84 TQQQHRDCVSCMAFYH-AEGLLYTGSFDKTVKAWRVLDKRC-----TCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGS 156 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 156 (358)
.+.+|+++|..++|+| +...||+|+.|.+|.||.+..+.. .++..+.+|...|-.++|+| -.+.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4479999999999999 567899999999999999875432 35667789999999999999 4578899999999
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeee
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI 236 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (358)
|.+||+.+++.... +. |...|.++.|+. +|.+|++.+.|..|+|||.+++.....- ....|+...-.-+--+
T Consensus 156 v~iWnv~tgeali~----l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 156 VSIWNVGTGEALIT----LD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLAS 227 (472)
T ss_pred EEEEeccCCceeee----cC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEecc
Confidence 99999987764333 33 899999999998 9999999999999999999985433222 1122332222333446
Q ss_pred CCEEEEee---CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 237 EKLIFSGS---EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 237 ~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
+.++-+|- .+..+-+||....+.. -...++... +.|.-=-|.++. +-..++|-.|+.||-|.+.+.+
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~nl~eP-~~~~elDtS-nGvl~PFyD~dt-----~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNNLEEP-IALQELDTS-NGVLLPFYDPDT-----SIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred CceeeeccccccccceeccCcccccCc-ceeEEeccC-CceEEeeecCCC-----CEEEEEecCCcceEEEEecCCC
Confidence 66444443 5778999998876421 123334333 334433456662 3445677789999999998643
No 183
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=2.7e-19 Score=134.09 Aligned_cols=247 Identities=15% Similarity=0.237 Sum_probs=176.5
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeee-ecccceEEEEe-cCCEEEEEeCCceEEEEecccccccccc------------cc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIK-ARHGEVRAILA-HDNMLFTTNKDCKIRIWNFTVSDNFRTK------------KV 67 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~-~h~~~v~~i~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~------------~~ 67 (358)
|.+|..-|.|++|++.+.+....+. .|...|+.+.. .++.+.+-+.|+.+.+|++.....+... .+
T Consensus 28 L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl 107 (323)
T KOG0322|consen 28 LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSL 107 (323)
T ss_pred hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEEeeeecccccccccee
Confidence 6789999999999999999888888 56778888865 4588999999999999998763322111 01
Q ss_pred cccCCCcee-eeecCC--------------------CccccCCCceEEEEEeC-CCC--EEEEEecCCeEEEEEccCCcc
Q 038537 68 TTLPRRSSF-LSFSKS--------------------NTQQQHRDCVSCMAFYH-AEG--LLYTGSFDKTVKAWRVLDKRC 123 (358)
Q Consensus 68 ~~~~~~~~~-~~~~~~--------------------~~~~~h~~~v~~~~~~~-~~~--~l~~~~~dg~i~iwd~~~~~~ 123 (358)
...+...+. +.+... ....+..+.+.|..+.. ++. +|++|..+|.+.+||+.++..
T Consensus 108 ~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~ 187 (323)
T KOG0322|consen 108 VKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK 187 (323)
T ss_pred ccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce
Confidence 111111100 111000 01123345567776533 232 577888999999999988631
Q ss_pred --------cccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcE
Q 038537 124 --------TCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYF 195 (358)
Q Consensus 124 --------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 195 (358)
+.......|..+|.++.+.+.-..=++|+.+..+..|.+.......+........+-.+..+.+-| |++.
T Consensus 188 ~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp--D~KI 265 (323)
T KOG0322|consen 188 IIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP--DGKI 265 (323)
T ss_pred eeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc--CCcE
Confidence 123344578999999999987666788888999999998755444444445555677889999998 9999
Q ss_pred EEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eeeCCEEEEeeCCCeEEEEEc
Q 038537 196 LYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAIEKLIFSGSEDTTIRVWRR 254 (358)
Q Consensus 196 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~ 254 (358)
+++++.|+.|++|..++. .....+.-|...+.++ +|+.+++|+++.|++|.+|++
T Consensus 266 lATAGWD~RiRVyswrtl----~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTL----NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccC----CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999984 3444466677777555 556689999999999999986
No 184
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.7e-19 Score=138.97 Aligned_cols=263 Identities=13% Similarity=0.140 Sum_probs=186.8
Q ss_pred eeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC
Q 038537 23 GFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA 100 (358)
Q Consensus 23 ~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 100 (358)
+-+.+|.+.|.++.| ++.+|++|+.|..+++|+++..-..+..+...+ .-..|...|.|++|...
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-------------~~~~H~SNIF~L~F~~~ 116 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV-------------MEHPHRSNIFSLEFDLE 116 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee-------------ccCccccceEEEEEccC
Confidence 345689999999988 577999999999999999875322221111000 11356788999999998
Q ss_pred CCEEEEEecCCeEEEEEccCCccccccccc--ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeeccc
Q 038537 101 EGLLYTGSFDKTVKAWRVLDKRCTCVDSFV--AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQ 178 (358)
Q Consensus 101 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 178 (358)
..++++|..+++|...|+++.+ .+..+. ...+.|..+..+|..+.|++.+.++.|.+||.+.......+.. +...
T Consensus 117 N~~~~SG~~~~~VI~HDiEt~q--si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~ 193 (609)
T KOG4227|consen 117 NRFLYSGERWGTVIKHDIETKQ--SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL-PANS 193 (609)
T ss_pred CeeEecCCCcceeEeeecccce--eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee-ecCC
Confidence 9999999999999999999987 444332 2345899999999999999999999999999987664433322 2334
Q ss_pred CCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccc-----eeEEEeeeCCEEEEeeCCCeEEEEE
Q 038537 179 QSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCF-----AVLCLVAIEKLIFSGSEDTTIRVWR 253 (358)
Q Consensus 179 ~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~dg~i~iwd 253 (358)
......+.|+| ....+|++.+..+-+-+||.+.............+-.. .-.-++++|+.|.+--....-.+||
T Consensus 194 ~~~F~t~~F~P-~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D 272 (609)
T KOG4227|consen 194 GKNFYTAEFHP-ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFD 272 (609)
T ss_pred CccceeeeecC-CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEee
Confidence 56678888988 45678899999999999999985433222111222221 1245677888777766555566788
Q ss_pred cCCCceeeeeeeeecCcc-------cceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCc
Q 038537 254 RAEGGCYHECLAVLDGHR-------GPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQE 313 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~h~-------~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~ 313 (358)
+-+.. .++... .|. ..+.+++|..+ .-+++|+.+-.|.+|.+...++..
T Consensus 273 ~~S~R---~~V~k~-D~N~~GY~N~~T~KS~~F~~D-------~~v~tGSD~~~i~~WklP~~~ds~ 328 (609)
T KOG4227|consen 273 FISQR---CFVLKS-DHNPNGYCNIKTIKSMTFIDD-------YTVATGSDHWGIHIWKLPRANDSY 328 (609)
T ss_pred eeccc---ceeEec-cCCCCcceeeeeeeeeeeecc-------eeeeccCcccceEEEecCCCcccc
Confidence 87752 122222 222 35677888876 569999999999999998766543
No 185
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.83 E-value=2.3e-19 Score=150.24 Aligned_cols=246 Identities=13% Similarity=0.150 Sum_probs=173.8
Q ss_pred EEEecCCEEEE--EeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC-CCCEEEEEecC
Q 038537 34 AILAHDNMLFT--TNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH-AEGLLYTGSFD 110 (358)
Q Consensus 34 ~i~~~~~~l~s--~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d 110 (358)
.++.+...+++ ++..|.|.||+++....+..-.+..+ -....|+.+.|.| |...|+.++.|
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l----------------~Ngt~vtDl~WdPFD~~rLAVa~dd 649 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL----------------FNGTLVTDLHWDPFDDERLAVATDD 649 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc----------------ccCceeeecccCCCChHHeeecccC
Confidence 33444455543 46678999999986554432222111 2345699999999 67789999999
Q ss_pred CeEEEEEccCCc-----ccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeE
Q 038537 111 KTVKAWRVLDKR-----CTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNA 184 (358)
Q Consensus 111 g~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~ 184 (358)
|.|++|.+..+. ..+...+..|...|+++.|+| -.+.|++++.|-+|++||+++.. ....+.+|...|..
T Consensus 650 g~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~----~~~~l~gHtdqIf~ 725 (1012)
T KOG1445|consen 650 GQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK----LYSRLVGHTDQIFG 725 (1012)
T ss_pred ceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh----hhheeccCcCceeE
Confidence 999999987643 234456778999999999999 56789999999999999996554 44566789999999
Q ss_pred EEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCC----CeEEEEEcCCCcee
Q 038537 185 LALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSED----TTIRVWRRAEGGCY 260 (358)
Q Consensus 185 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 260 (358)
++|+| +|+.+++.+.||+|++|+.++............+....-.-+.-+++++++.+.| ..|.+||..+-..
T Consensus 726 ~AWSp--dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~- 802 (1012)
T KOG1445|consen 726 IAWSP--DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL- 802 (1012)
T ss_pred EEECC--CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-
Confidence 99999 9999999999999999999886554443333334444445667788888887765 4588888776532
Q ss_pred eeeeeeecCcccceEEE-EeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 261 HECLAVLDGHRGPVRCL-AASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 261 ~~~~~~~~~h~~~v~~i-~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.++.+..-.-.+-.-+ .+.+|. +-++++|-.|..|.+|.+-.
T Consensus 803 -~pl~t~~lDvaps~LvP~YD~Ds-----~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 803 -RPLYTQVLDVAPSPLVPHYDYDS-----NVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred -CcceeeeecccCccccccccCCC-----ceEEEecCCCceEEEEEecC
Confidence 2222221111111111 223332 56889999999999999875
No 186
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=5.9e-17 Score=141.68 Aligned_cols=267 Identities=30% Similarity=0.515 Sum_probs=193.3
Q ss_pred EEeeeCCCcEEEEeCCCce-eeeeeeeccc-ceEEEEe---cCC-EEEEEeC-CceEEEEeccc-ccccccccccccCCC
Q 038537 2 VFTGSSSTRIRVWRQPDCV-ERGFIKARHG-EVRAILA---HDN-MLFTTNK-DCKIRIWNFTV-SDNFRTKKVTTLPRR 73 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~-~~~~~~~h~~-~v~~i~~---~~~-~l~s~~~-dg~i~iw~~~~-~~~~~~~~~~~~~~~ 73 (358)
++.++.|+.+.+|+..... ....+..+.. .+..+.. ++. .++..+. |+.+.+|+... ....
T Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----------- 148 (466)
T COG2319 80 LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLI----------- 148 (466)
T ss_pred EEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEE-----------
Confidence 4567789999999998876 6666666443 5554443 444 4555444 99999999986 2221
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec-CCeEEEEEccCCcccccccccccccCeEEEEEcCCCC-EEEEE
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF-DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDG-FVFTC 151 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 151 (358)
..+..|...|.+++|+|++..+++++. |+.+++|++.... .+..+..|...|.+++|+|++. .++++
T Consensus 149 ---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 217 (466)
T COG2319 149 ---------RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--PLSTLAGHTDPVSSLAFSPDGGLLIASG 217 (466)
T ss_pred ---------EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--eEEeeccCCCceEEEEEcCCcceEEEEe
Confidence 134689999999999999998888885 9999999998855 6677777999999999999988 55555
Q ss_pred eCCCcEEEEEceecCCcceeee-eecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee
Q 038537 152 SSDGSVKIWRRVYRENSHTLTM-TLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV 230 (358)
Q Consensus 152 ~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 230 (358)
+.|+.|++||...+. ... .+..|.... ...|++ ++..+++++.|+.+++|+++.... ......+|...+
T Consensus 218 ~~d~~i~~wd~~~~~----~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v 287 (466)
T COG2319 218 SSDGTIRLWDLSTGK----LLRSTLSGHSDSV-VSSFSP--DGSLLASGSSDGTIRLWDLRSSSS---LLRTLSGHSSSV 287 (466)
T ss_pred cCCCcEEEEECCCCc----EEeeecCCCCcce-eEeECC--CCCEEEEecCCCcEEEeeecCCCc---EEEEEecCCccE
Confidence 899999999875222 222 455565554 337777 678888999999999999987443 111124555555
Q ss_pred EE--EeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeee--cCcccceEEEEeecccceeeeCeEEEEc-cCCCcEEEEE
Q 038537 231 LC--LVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVL--DGHRGPVRCLAASLEMEKVVMGFLVYSS-SLDQTFKVWR 305 (358)
Q Consensus 231 ~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~h~~~v~~i~~~~~~~~~~~~~~l~s~-~~dg~v~iw~ 305 (358)
.+ +.|++..+++++.|+.+.+||...... .... ..|...+..+.+ +.. +..++.+ ..|+.+.+|+
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKL----LSSLTLKGHEGPVSSLSF-SPD-----GSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCce----EEEeeecccCCceEEEEE-CCC-----CCEEEEeecCCCcEEeee
Confidence 54 445568888888889999999888743 2333 478778999999 531 2344444 7889999999
Q ss_pred eeeCC
Q 038537 306 VKVMP 310 (358)
Q Consensus 306 ~~~~~ 310 (358)
+....
T Consensus 358 ~~~~~ 362 (466)
T COG2319 358 LRTGK 362 (466)
T ss_pred cCCCc
Confidence 98654
No 187
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.1e-18 Score=139.27 Aligned_cols=200 Identities=20% Similarity=0.220 Sum_probs=151.0
Q ss_pred EEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceee
Q 038537 93 SCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLT 172 (358)
Q Consensus 93 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 172 (358)
.+++|+++|..|++|+.||++|+|+..... .+.....|.+.|.++.|+||+++|++.+.| ..+||+.+++.......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~--t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML--TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch--hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 789999999999999999999999987766 677778899999999999999999999999 89999998874332222
Q ss_pred eeecccCCceeEEEEeecCCC---cE--EEEeecCCcEEEEEccCCcCC--ccccceeecc-cceeEEEeeeCCEEEEee
Q 038537 173 MTLKFQQSSVNALALSSFFDN---YF--LYSGSSDGSINFWEKDKMSGG--FNHGGFLQGH-CFAVLCLVAIEKLIFSGS 244 (358)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~~~---~~--l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~l~~~~ 244 (358)
. ...+.....+.|.. ++ .+ ++.....+.|..||+...... .........+ ......++.+|++++.|+
T Consensus 225 ~--~~k~~~~~~cRF~~--d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT 300 (398)
T KOG0771|consen 225 P--FSKDEMFSSCRFSV--DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT 300 (398)
T ss_pred C--cccchhhhhceecc--cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec
Confidence 1 22344556667765 33 22 223333566777776553221 1111122223 455677788999999999
Q ss_pred CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 245 EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.||.|.|++..+.+ .....-+.|...|+.+.|+|+ .+++++.+.|....+..+.-
T Consensus 301 ~dGsVai~~~~~lq---~~~~vk~aH~~~VT~ltF~Pd------sr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 301 MDGSVAIYDAKSLQ---RLQYVKEAHLGFVTGLTFSPD------SRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred cCCcEEEEEeceee---eeEeehhhheeeeeeEEEcCC------cCcccccccCCceeEEEEee
Confidence 99999999999874 334455679999999999999 78999999999999998874
No 188
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.82 E-value=9.1e-18 Score=129.39 Aligned_cols=247 Identities=11% Similarity=0.078 Sum_probs=185.0
Q ss_pred eeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCC
Q 038537 24 FIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAE 101 (358)
Q Consensus 24 ~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 101 (358)
.+..-..+|+|.+++ ...+|.+.....|.||.....+.- .+.+++..|...|++++|+|..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w-----------------~~~htls~Hd~~vtgvdWap~s 67 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLW-----------------EPAHTLSEHDKIVTGVDWAPKS 67 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCc-----------------eeceehhhhCcceeEEeecCCC
Confidence 334446788988884 668999999999999998876532 2234668999999999999999
Q ss_pred CEEEEEecCCeEEEEEc-cCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCC
Q 038537 102 GLLYTGSFDKTVKAWRV-LDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQS 180 (358)
Q Consensus 102 ~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 180 (358)
+.|++|+.|..-++|.. ..+++++...+..++...+++.|+|.++.|++|+.-..|.||-.+....-..-...-+.+.+
T Consensus 68 nrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirS 147 (361)
T KOG1523|consen 68 NRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS 147 (361)
T ss_pred CceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcccc
Confidence 99999999999999998 77888888888899999999999999999999999999999988655443333334455678
Q ss_pred ceeEEEEeecCCCcEEEEeecCCcEEEEEccC-----CcCC------c---ccccee--ecccceeEEEeeeCCEEEEee
Q 038537 181 SVNALALSSFFDNYFLYSGSSDGSINFWEKDK-----MSGG------F---NHGGFL--QGHCFAVLCLVAIEKLIFSGS 244 (358)
Q Consensus 181 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~~~------~---~~~~~~--~~~~~~~~~~~~~~~~l~~~~ 244 (358)
.|.++.|+| ++-+|++|+.|+..++|..-- .... . .+.... .+.-..-..++++|+.|+-.+
T Consensus 148 tv~sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~ 225 (361)
T KOG1523|consen 148 TVTSLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVG 225 (361)
T ss_pred ceeeeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEec
Confidence 999999999 999999999999999996421 0000 0 000111 112223367788899999999
Q ss_pred CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCC
Q 038537 245 EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQ 299 (358)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg 299 (358)
.|+.+.+-|...... .+.....-.-+..++.|-.+ ..++.++.|.
T Consensus 226 Hds~v~~~da~~p~~---~v~~~~~~~lP~ls~~~ise-------~~vv~ag~~c 270 (361)
T KOG1523|consen 226 HDSTVSFVDAAGPSE---RVQSVATAQLPLLSVSWISE-------NSVVAAGYDC 270 (361)
T ss_pred CCCceEEeecCCCch---hccchhhccCCceeeEeecC-------CceeecCCCC
Confidence 999999999887642 23333333367778888765 3455555553
No 189
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=2.4e-17 Score=129.44 Aligned_cols=180 Identities=14% Similarity=0.190 Sum_probs=144.0
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccC
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQH 88 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 88 (358)
+.+++.+++....+..+. ...+|.++..+.++|+++=.+. |.|||+.+.+.+..... ...+
T Consensus 68 r~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t-----------------~~~n 128 (391)
T KOG2110|consen 68 RKLKVVHFKKKTTICEIF-FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIET-----------------TPPN 128 (391)
T ss_pred ceEEEEEcccCceEEEEe-cCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhc-----------------cCCC
Confidence 457777777666655544 3567889999999888887664 99999999887765442 1346
Q ss_pred CCceEEEEEeCCCCEEEEE--ecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc-EEEEEceec
Q 038537 89 RDCVSCMAFYHAEGLLYTG--SFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS-VKIWRRVYR 165 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~ 165 (358)
...+.++++++.+.+|+.- ...|.|.+||..+-+ .+..+..|++++.+++|+++|.+|+++++.|+ |||+.+.++
T Consensus 129 ~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~--~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 129 PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ--PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred ccceEeeccCCCCceEEecCCCCCceEEEEEcccce--eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 6667778877777788763 345899999998887 88889999999999999999999999999987 699999877
Q ss_pred CCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCC
Q 038537 166 ENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKM 213 (358)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 213 (358)
+...++.+-.. ...|.+++|+| ++.+|++.+..++|++|.+...
T Consensus 207 ~kl~eFRRG~~--~~~IySL~Fs~--ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 207 QKLYEFRRGTY--PVSIYSLSFSP--DSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred cEeeeeeCCce--eeEEEEEEECC--CCCeEEEecCCCeEEEEEeccc
Confidence 76666554332 56789999998 9999999999999999999873
No 190
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=6.4e-18 Score=145.68 Aligned_cols=245 Identities=14% Similarity=0.148 Sum_probs=168.1
Q ss_pred CEEeeeCCCcEEEEeCCCcee--ee----eeeecccceEEEEec----CCEEEEEeCCceEEEEeccccccccccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPDCVE--RG----FIKARHGEVRAILAH----DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~--~~----~~~~h~~~v~~i~~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 70 (358)
+||.|+.+|.|.+||+..+.. .. ....|..++.++.+. +.-+++++.||.|..|+++.............
T Consensus 257 ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~ 336 (555)
T KOG1587|consen 257 LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES 336 (555)
T ss_pred eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccc
Confidence 588999999999999976654 22 234688899998772 35699999999999998764433111111000
Q ss_pred CCCceeeeecCCCccccCCCceEEEEEeC-CCCEEEEEecCCeEEEEEccCCcccc------cccccccccCeEEEEEcC
Q 038537 71 PRRSSFLSFSKSNTQQQHRDCVSCMAFYH-AEGLLYTGSFDKTVKAWRVLDKRCTC------VDSFVAHESNVNAIVVNQ 143 (358)
Q Consensus 71 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~------~~~~~~~~~~v~~~~~~~ 143 (358)
.. ....-......+++++|.+ +...++.|+.+|.|.--+-...+... ...+..|.++|+++.++|
T Consensus 337 ~~--------~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nP 408 (555)
T KOG1587|consen 337 KK--------HKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNP 408 (555)
T ss_pred cc--------ccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCC
Confidence 00 0000112344689999988 45678999999998874433322112 345567899999999999
Q ss_pred CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccccee
Q 038537 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFL 223 (358)
Q Consensus 144 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 223 (358)
-+..++..+.|.++++|.... ...+...+..+...+++++|+| .....|+++..||.|.+||+.............
T Consensus 409 F~~k~fls~gDW~vriWs~~~---~~~Pl~~~~~~~~~v~~vaWSp-trpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~ 484 (555)
T KOG1587|consen 409 FYPKNFLSVGDWTVRIWSEDV---IASPLLSLDSSPDYVTDVAWSP-TRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV 484 (555)
T ss_pred CccceeeeeccceeEeccccC---CCCcchhhhhccceeeeeEEcC-cCceEEEEEcCCCceehhhhhccccCCcccccc
Confidence 776666555699999998631 3334445555667799999999 456789999999999999998744333322222
Q ss_pred ecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 224 QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
.........+++.++.|++|...|.+.+|++...
T Consensus 485 ~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 485 CSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred cccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 2223333455667999999999999999999653
No 191
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=2.9e-18 Score=132.05 Aligned_cols=213 Identities=15% Similarity=0.146 Sum_probs=170.0
Q ss_pred CCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCc-ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecC
Q 038537 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR-CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRE 166 (358)
Q Consensus 88 h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 166 (358)
-..+|+|.+|+++...++.+.....|.||.....+ ++..+++..|...|++++|+|..+.|++++.|..-++|....+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~- 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG- 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC-
Confidence 45679999999999999999999999999998877 7889999999999999999999999999999999999987543
Q ss_pred CcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe--eeCCEEEEee
Q 038537 167 NSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV--AIEKLIFSGS 244 (358)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~ 244 (358)
........+..++...+++.|+| .++.|++|+....|.+|-++....-.........+...|++++ |++-+|++|+
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP--~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSP--KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CeeccceeEEEeccceeeEeecC--cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 33444555666889999999999 9999999999999999988875443333333344556666665 4667899999
Q ss_pred CCCeEEEEEcCCCce--------------eeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 245 EDTTIRVWRRAEGGC--------------YHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 245 ~dg~i~iwd~~~~~~--------------~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
.|+..|+|...-... .-+++.++....+.|..+.|+|+ |..|+=.+.|..+.+=|....
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s------G~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS------GNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC------CCEeeEecCCCceEEeecCCC
Confidence 999999997532110 00123333345678999999999 889999999999999887643
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.2e-17 Score=129.85 Aligned_cols=195 Identities=15% Similarity=0.200 Sum_probs=147.5
Q ss_pred CEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC--CCCEEEEEecCCeEEEEE
Q 038537 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH--AEGLLYTGSFDKTVKAWR 117 (358)
Q Consensus 40 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd 117 (358)
+.+|++-..|.|++||..+++.+.. +.++...+..+.|.. ....+.+|+.||+|++||
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~--------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD 100 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE--------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWD 100 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe--------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEE
Confidence 5688899999999999998776643 356777788888876 456789999999999999
Q ss_pred ccCCcccccccccccc-cCeEEEEEcCCCCEEEEEeC----CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCC
Q 038537 118 VLDKRCTCVDSFVAHE-SNVNAIVVNQDDGFVFTCSS----DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFD 192 (358)
Q Consensus 118 ~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 192 (358)
++.........+..+. .+..+++.+-.++.+++|++ +-.|.+||+|..+.. +..-...|...|+++.|+| .+
T Consensus 101 ~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~--l~~~~eSH~DDVT~lrFHP-~~ 177 (376)
T KOG1188|consen 101 IRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL--LRQLNESHNDDVTQLRFHP-SD 177 (376)
T ss_pred eecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch--hhhhhhhccCcceeEEecC-CC
Confidence 9987644555555555 56777777767888888865 678999999866542 3334567999999999999 57
Q ss_pred CcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeC---CEEEEeeCCCeEEEEEcCCCc
Q 038537 193 NYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE---KLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 193 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~ 258 (358)
.++|++|+.||.|.+||+......-.+.. .-.+...|-++.+.+ +.|.+-+..+...+|++..+.
T Consensus 178 pnlLlSGSvDGLvnlfD~~~d~EeDaL~~-viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 178 PNLLLSGSVDGLVNLFDTKKDNEEDALLH-VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred CCeEEeecccceEEeeecCCCcchhhHHH-hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 89999999999999999987533222222 223444455555533 368888889999999999875
No 193
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=1.4e-16 Score=139.41 Aligned_cols=246 Identities=27% Similarity=0.438 Sum_probs=185.4
Q ss_pred eeeecccceEEEEe--cCCEEEEEeCCceEEEEeccccc-ccccccccccCCCceeeeecCCCccccCC-CceEEEEE-e
Q 038537 24 FIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSD-NFRTKKVTTLPRRSSFLSFSKSNTQQQHR-DCVSCMAF-Y 98 (358)
Q Consensus 24 ~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~-~ 98 (358)
.+..|...+..+.+ .+..++.++.|+.+.+|+..... .... +..+. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS--------------------LEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEE--------------------EeccCCCceeeEEEEC
Confidence 45678888888877 46678888899999999998775 2211 12222 35666666 7
Q ss_pred CCCC-EEEEEec-CCeEEEEEccC-CcccccccccccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEceecCCcceeeee
Q 038537 99 HAEG-LLYTGSF-DKTVKAWRVLD-KRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DGSVKIWRRVYRENSHTLTMT 174 (358)
Q Consensus 99 ~~~~-~l~~~~~-dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~ 174 (358)
+++. .++..+. |+.+.+|+... .. ....+..|...|..++|+|++..+++++. |+.+++|++.. ......
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 193 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGK--LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT----GKPLST 193 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCe--EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC----CceEEe
Confidence 7777 5555444 99999999987 44 56777889999999999999998888886 99999999865 233444
Q ss_pred ecccCCceeEEEEeecCCCc-EEEEeecCCcEEEEEccCCcCCccccc-eeecccce-eEEEeeeCCEEEEeeCCCeEEE
Q 038537 175 LKFQQSSVNALALSSFFDNY-FLYSGSSDGSINFWEKDKMSGGFNHGG-FLQGHCFA-VLCLVAIEKLIFSGSEDTTIRV 251 (358)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~l~~~~~dg~i~i 251 (358)
+..|...+.++++.| ++. .+++++.|+.|++||..... ... .+.+|... +..+++++.++++++.|+.+++
T Consensus 194 ~~~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 267 (466)
T COG2319 194 LAGHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGK----LLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRL 267 (466)
T ss_pred eccCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCc----EEeeecCCCCcceeEeECCCCCEEEEecCCCcEEE
Confidence 555899999999997 776 55555999999999877422 222 34455444 4478888889999999999999
Q ss_pred EEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 252 WRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 252 wd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
|+...... .+..+.+|...|.++.|.|+ +..+++++.|+.+.+|++....
T Consensus 268 ~~~~~~~~---~~~~~~~~~~~v~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 268 WDLRSSSS---LLRTLSGHSSSVLSVAFSPD------GKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred eeecCCCc---EEEEEecCCccEEEEEECCC------CCEEEEeeCCCcEEEEEcCCCc
Confidence 99997743 23333688999999999996 6677779999999999877543
No 194
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=7.4e-18 Score=128.22 Aligned_cols=251 Identities=14% Similarity=0.166 Sum_probs=175.1
Q ss_pred ecccceEEEEec-------CCEEEEEeCCceEEEEecccccc-cccccccccCCCceeeeecCCCccccCCCceEEEEEe
Q 038537 27 ARHGEVRAILAH-------DNMLFTTNKDCKIRIWNFTVSDN-FRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFY 98 (358)
Q Consensus 27 ~h~~~v~~i~~~-------~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 98 (358)
.|.-+++.+.|. +++|||++ -.+|+|.+...+. ......... ..-..+..++++..|+
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~------------~kns~~~aPlTSFDWn 159 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNN------------NKNSEFCAPLTSFDWN 159 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhcc------------CcccccCCcccccccc
Confidence 577788888763 34566554 3799999884321 111110000 0114567899999998
Q ss_pred C-CCCEEEEEecCCeEEEEEccCCcc-cccccccccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEceecCCcceeeeee
Q 038537 99 H-AEGLLYTGSFDKTVKAWRVLDKRC-TCVDSFVAHESNVNAIVVNQDD-GFVFTCSSDGSVKIWRRVYRENSHTLTMTL 175 (358)
Q Consensus 99 ~-~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 175 (358)
. +.++|.+++-|-+..|||++++.. .....+..|..+|..++|...+ +.|++++.||.+|+||++..+... +..+-
T Consensus 160 e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHST-IIYE~ 238 (364)
T KOG0290|consen 160 EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHST-IIYED 238 (364)
T ss_pred cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccce-EEecC
Confidence 7 667899999999999999998731 1344567899999999999744 589999999999999998665432 22222
Q ss_pred cccCCceeEEEEeecCCCcEEEEeecC-CcEEEEEccCCcCCccccceeecccceeEEEee---eCCEEEEeeCCCeEEE
Q 038537 176 KFQQSSVNALALSSFFDNYFLYSGSSD-GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA---IEKLIFSGSEDTTIRV 251 (358)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~i 251 (358)
.....+...++|++ .+.+++++-..| ..|.+.|++... .....+.+|...|..+.+ ....|++++.|..+.+
T Consensus 239 p~~~~pLlRLswnk-qDpnymATf~~dS~~V~iLDiR~P~---tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qali 314 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNK-QDPNYMATFAMDSNKVVILDIRVPC---TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALI 314 (364)
T ss_pred CCCCCcceeeccCc-CCchHHhhhhcCCceEEEEEecCCC---cceehhhcCcccccceEecCCCCceeeecCCcceEEE
Confidence 22356778888887 467788876554 569999999743 444558889988877665 3689999999999999
Q ss_pred EEcCCCce--eeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 252 WRRAEGGC--YHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 252 wd~~~~~~--~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
||+..... ...++..+. -.+.|+.+.|++.. ...++.+.. ..+.+
T Consensus 315 WDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~-----~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQ-----PDWIAICFG-KKLEI 361 (364)
T ss_pred EecccccccCCCCchhhhh-ccceeeeeeecccC-----CCEEEEEec-CeeeE
Confidence 99986421 112333333 56789999999875 367777654 34444
No 195
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.3e-18 Score=141.12 Aligned_cols=279 Identities=17% Similarity=0.216 Sum_probs=200.8
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeee-eecccceEEEEe----cCCEEEEEeCCceEEEEecccccccccccccccCCCce
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFI-KARHGEVRAILA----HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~-~~h~~~v~~i~~----~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
.|++|+.|..|.+||...+.....+ .+|...|..-.| +..-+++++.||.+++=.+.........
T Consensus 156 ~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t---------- 225 (559)
T KOG1334|consen 156 VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENT---------- 225 (559)
T ss_pred eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecc----------
Confidence 4789999999999999887765544 578777765434 3568999999999998776544333211
Q ss_pred eeeecCCCccccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCcccccccccc-ccc---CeEEEEEcCC-CCEEE
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCVDSFVA-HES---NVNAIVVNQD-DGFVF 149 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~---~v~~~~~~~~-~~~l~ 149 (358)
..+..|.++|.-++.-|.. ..|.+++.|+.+.-.|++............ +.. ....++.+|. ...++
T Consensus 226 -------~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~fa 298 (559)
T KOG1334|consen 226 -------KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFA 298 (559)
T ss_pred -------eecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccc
Confidence 1336799999999998865 468999999999999998776322222222 233 4678888884 45899
Q ss_pred EEeCCCcEEEEEceecCCc------cee--eeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcC--C---
Q 038537 150 TCSSDGSVKIWRRVYRENS------HTL--TMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSG--G--- 216 (358)
Q Consensus 150 ~~~~dg~i~~wd~~~~~~~------~~~--~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~--- 216 (358)
+++.|..+++||.+.-... .++ ..........|++++|+. ++.-|+++..|-.|+++.-..... +
T Consensus 299 VgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh--~~sElLaSYnDe~IYLF~~~~~~G~~p~~~ 376 (559)
T KOG1334|consen 299 VGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH--DGSELLASYNDEDIYLFNKSMGDGSEPDPS 376 (559)
T ss_pred cCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC--CccceeeeecccceEEeccccccCCCCCCC
Confidence 9999999999998643222 111 011113345799999997 677778888888999995433221 0
Q ss_pred ----ccccceeecccc--eeEEEe---eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceee
Q 038537 217 ----FNHGGFLQGHCF--AVLCLV---AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVV 287 (358)
Q Consensus 217 ----~~~~~~~~~~~~--~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~ 287 (358)
........+|.. .|..+. |...++++|+.-|.|.||+-.++ +.+..+.+...-|+||.-+|..
T Consensus 377 s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~----eii~~MegDr~VVNCLEpHP~~---- 448 (559)
T KOG1334|consen 377 SPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG----EIIRFMEGDRHVVNCLEPHPHL---- 448 (559)
T ss_pred cchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh----HHHHHhhcccceEeccCCCCCC----
Confidence 111122556653 233443 45689999999999999999998 6788888877799999999994
Q ss_pred eCeEEEEccCCCcEEEEEeee
Q 038537 288 MGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 288 ~~~~l~s~~~dg~v~iw~~~~ 308 (358)
-+||++|-|..|+||-...
T Consensus 449 --PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 449 --PVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred --chhhccCCccceeeecCCc
Confidence 4999999999999998744
No 196
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.79 E-value=2.2e-17 Score=135.81 Aligned_cols=243 Identities=15% Similarity=0.159 Sum_probs=168.5
Q ss_pred EeeeCCCcEEEEeCCCceeeeeeeecccceEE-E-----Ee----cCCEEEEEeCCceEEEEecccccccccccccccCC
Q 038537 3 FTGSSSTRIRVWRQPDCVERGFIKARHGEVRA-I-----LA----HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPR 72 (358)
Q Consensus 3 ~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~-i-----~~----~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 72 (358)
+..++|..+.+|+..+......+.-....+.. + +. ..+.++.++.||.+.+.+-...-.
T Consensus 29 ~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~k~~rVE----------- 97 (737)
T KOG1524|consen 29 YFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILNKSARVE----------- 97 (737)
T ss_pred EEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEecccchhh-----------
Confidence 45566777777765444333333322222221 1 11 134788899999999987543211
Q ss_pred CceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEe
Q 038537 73 RSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCS 152 (358)
Q Consensus 73 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 152 (358)
+.+.+|.+.+.|-.|+|+|.-|++++.||.|++|.-. +. ...++.....+|.|++|.|+.+.++-+.
T Consensus 98 ----------~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GM--LRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 98 ----------RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GM--LRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred ----------hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-ch--HHHHHhhcCceeEEEEECCCCCceEEec
Confidence 1347899999999999999999999999999999853 43 3344445678999999999888776654
Q ss_pred CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEE
Q 038537 153 SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC 232 (358)
Q Consensus 153 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 232 (358)
.+.+.+=.+. ........++|.+-|.++.|++ ..+++++|++|-..++||-.. ........|..++++
T Consensus 165 -g~h~~IKpL~----~n~k~i~WkAHDGiiL~~~W~~--~s~lI~sgGED~kfKvWD~~G-----~~Lf~S~~~ey~ITS 232 (737)
T KOG1524|consen 165 -GGHISIKPLA----ANSKIIRWRAHDGLVLSLSWST--QSNIIASGGEDFRFKIWDAQG-----ANLFTSAAEEYAITS 232 (737)
T ss_pred -CCeEEEeecc----cccceeEEeccCcEEEEeecCc--cccceeecCCceeEEeecccC-----cccccCChhccceee
Confidence 3556665552 2233456788999999999998 899999999999999999765 222224456667777
Q ss_pred EeeeCC-EEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 233 LVAIEK-LIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 233 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
+++++. .++.++. .++|+ -+...+.|..++|++| |..++.|...|.+.+
T Consensus 233 va~npd~~~~v~S~-nt~R~---------------~~p~~GSifnlsWS~D------GTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 233 VAFNPEKDYLLWSY-NTARF---------------SSPRVGSIFNLSWSAD------GTQATCGTSTGQLIV 282 (737)
T ss_pred eeeccccceeeeee-eeeee---------------cCCCccceEEEEEcCC------CceeeccccCceEEE
Confidence 766543 3444432 33331 1234678999999999 889999999998765
No 197
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.5e-16 Score=136.75 Aligned_cols=277 Identities=16% Similarity=0.230 Sum_probs=196.3
Q ss_pred CEEeeeCCCcEEEEeCCC----ceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 1 MVFTGSSSTRIRVWRQPD----CVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~----~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
++|+|..||.|.+|.--. ......+.-|...|.+++| +|.+|++|+..|.+.+|.+.+++..
T Consensus 219 ~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq------------ 286 (792)
T KOG1963|consen 219 YLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ------------ 286 (792)
T ss_pred eEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc------------
Confidence 478999999999997432 2334677889999999877 7899999999999999999988732
Q ss_pred eeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccc-----------cccCeEEEEEcC
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA-----------HESNVNAIVVNQ 143 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~~~ 143 (358)
-+..-.++|..+.++||+...+....|..|.+....+.. ...++.+ ..+-.+.++++|
T Consensus 287 ---------fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~--~k~tIsgi~~~~~~~k~~~~~l~t~~~idp 355 (792)
T KOG1963|consen 287 ---------FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE--IKSTISGIKPPTPSTKTRPQSLTTGVSIDP 355 (792)
T ss_pred ---------cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh--hhhhccCccCCCccccccccccceeEEEcC
Confidence 224556789999999999999999999999999876544 2222211 234567889999
Q ss_pred CCCEEEEEeCCCcEEEEEceecCCcceeeeeecc-------cCCceeEEEEeecCCCcEEEEeec--------C--CcEE
Q 038537 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKF-------QQSSVNALALSSFFDNYFLYSGSS--------D--GSIN 206 (358)
Q Consensus 144 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~l~~~~~--------d--g~i~ 206 (358)
..+.++-.+..|.|.+||+.+.....++...... +.-.++.++.+. .+.++++.-. | -.++
T Consensus 356 r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~--~gs~maT~E~~~d~~~~~~~e~~LK 433 (792)
T KOG1963|consen 356 RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR--FGSWMATLEARIDKFNFFDGEVSLK 433 (792)
T ss_pred CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc--cceEEEEeeeeehhhhccCceEEEE
Confidence 7888888999999999999877666554433221 123455666665 6888888642 3 2477
Q ss_pred EEEccCCcCCccccce-eeccccee--EEEee--eCCEEEEeeCCCeEEEEEcCCC------ceeeeeeeeecCcccceE
Q 038537 207 FWEKDKMSGGFNHGGF-LQGHCFAV--LCLVA--IEKLIFSGSEDTTIRVWRRAEG------GCYHECLAVLDGHRGPVR 275 (358)
Q Consensus 207 i~d~~~~~~~~~~~~~-~~~~~~~~--~~~~~--~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~h~~~v~ 275 (358)
+|-.......+.+... ..+|.... +++.. .....++++.||.+++|-+... ...+.+...-.-|..+++
T Consensus 434 FW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~ 513 (792)
T KOG1963|consen 434 FWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPIT 513 (792)
T ss_pred EEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCccc
Confidence 8876664444443322 23444433 33332 2348899999999999988432 222334433334888999
Q ss_pred EEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 276 CLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 276 ~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
+.+|+.| |. +++++.|++|.+||..+.
T Consensus 514 a~~fs~d------Gs-lla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 514 ALCFSQD------GS-LLAVSFDDTITIWDYDTK 540 (792)
T ss_pred chhhcCC------Cc-EEEEecCCEEEEecCCCh
Confidence 9999999 74 555667889999999874
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=1.5e-16 Score=137.91 Aligned_cols=215 Identities=17% Similarity=0.127 Sum_probs=145.6
Q ss_pred CceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecC---CeEEEEEccCCccc
Q 038537 48 DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD---KTVKAWRVLDKRCT 124 (358)
Q Consensus 48 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~ 124 (358)
+..|.+||.+..... .+..|...+...+|+|+|+.|+.++.+ ..|++||+.+++..
T Consensus 183 ~~~i~i~d~dg~~~~---------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~ 241 (429)
T PRK01742 183 PYEVRVADYDGFNQF---------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK 241 (429)
T ss_pred eEEEEEECCCCCCce---------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE
Confidence 468999998755421 224577789999999999999887654 37999999887643
Q ss_pred ccccccccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEee-cC
Q 038537 125 CVDSFVAHESNVNAIVVNQDDGFVFTCS-SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS-SD 202 (358)
Q Consensus 125 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d 202 (358)
.+..+.++ ...++|+||++.|+.+. .+|.+.+|.+...... ...+..+...+....|+| ++..|+.++ .+
T Consensus 242 ~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~ 313 (429)
T PRK01742 242 VVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS 313 (429)
T ss_pred EEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence 44444433 34689999999888765 6887766644321111 122334556678899998 888776554 57
Q ss_pred CcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecc
Q 038537 203 GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 203 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
|...+|++......... . .+......++|+++.|+..+.++ +.+||+.+++. +.+ ...+ ....+.|+|+
T Consensus 314 g~~~I~~~~~~~~~~~~---l-~~~~~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~--~~l--t~~~--~~~~~~~sPd 382 (429)
T PRK01742 314 GSPQVYRMSASGGGASL---V-GGRGYSAQISADGKTLVMINGDN-VVKQDLTSGST--EVL--SSTF--LDESPSISPN 382 (429)
T ss_pred CCceEEEEECCCCCeEE---e-cCCCCCccCCCCCCEEEEEcCCC-EEEEECCCCCe--EEe--cCCC--CCCCceECCC
Confidence 88889887653222221 1 12112356889999998887765 56699988742 111 1122 2356789999
Q ss_pred cceeeeCeEEEEccCCCcEEEEEeee
Q 038537 283 MEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 283 ~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
|++|+.++.+|.+.+|++..
T Consensus 383 ------G~~i~~~s~~g~~~~l~~~~ 402 (429)
T PRK01742 383 ------GIMIIYSSTQGLGKVLQLVS 402 (429)
T ss_pred ------CCEEEEEEcCCCceEEEEEE
Confidence 88999999999999998864
No 199
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=1.8e-16 Score=142.15 Aligned_cols=267 Identities=11% Similarity=0.159 Sum_probs=172.3
Q ss_pred CceeeeeeeecccceEEEEe---cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEE
Q 038537 18 DCVERGFIKARHGEVRAILA---HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSC 94 (358)
Q Consensus 18 ~~~~~~~~~~h~~~v~~i~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 94 (358)
.|..+..+..|...|..++. ++.++++||.||+|++|+...-..-.. .+....++..-..++.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~-------------s~rS~ltys~~~sr~~~ 1103 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG-------------SARSELTYSPEGSRVEK 1103 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc-------------eeeeeEEEeccCCceEE
Confidence 57788899999998887755 457999999999999999874322100 00111122335677899
Q ss_pred EEEeCCCCEEEEEecCCeEEEEEccCCccc-----cccccccc-ccCeEEE-EEcC-CCC-EEEEEeCCCcEEEEEceec
Q 038537 95 MAFYHAEGLLYTGSFDKTVKAWRVLDKRCT-----CVDSFVAH-ESNVNAI-VVNQ-DDG-FVFTCSSDGSVKIWRRVYR 165 (358)
Q Consensus 95 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~-~~~v~~~-~~~~-~~~-~l~~~~~dg~i~~wd~~~~ 165 (358)
+...+.+..+|.++.||.|++.+++..... .......+ .+.+.++ +|.. .+. .++.+...+.|..||+++.
T Consensus 1104 vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~ 1183 (1431)
T KOG1240|consen 1104 VTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMR 1183 (1431)
T ss_pred EEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhh
Confidence 999999999999999999999998762211 11111111 2333333 3433 233 7888889999999999887
Q ss_pred CCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEeee---CCEE
Q 038537 166 ENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAI---EKLI 240 (358)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~l 240 (358)
...+..... ...+.|++++.+| .+++++.|...|.+.+||++-........ .++...+ +++++- ....
T Consensus 1184 ~~~w~lk~~--~~hG~vTSi~idp--~~~WlviGts~G~l~lWDLRF~~~i~sw~---~P~~~~i~~v~~~~~~~~~S~~ 1256 (1431)
T KOG1240|consen 1184 HDAWRLKNQ--LRHGLVTSIVIDP--WCNWLVIGTSRGQLVLWDLRFRVPILSWE---HPARAPIRHVWLCPTYPQESVS 1256 (1431)
T ss_pred hhHHhhhcC--ccccceeEEEecC--CceEEEEecCCceEEEEEeecCceeeccc---CcccCCcceEEeeccCCCCceE
Confidence 766655443 3468999999999 88899999999999999999733222221 1222233 344442 2444
Q ss_pred EEee--CCCeEEEEEcCCCceeeeeeeeec----Cc---------ccceEE--EEeecccceeeeCeEEEEccCCCcEEE
Q 038537 241 FSGS--EDTTIRVWRRAEGGCYHECLAVLD----GH---------RGPVRC--LAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 241 ~~~~--~dg~i~iwd~~~~~~~~~~~~~~~----~h---------~~~v~~--i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
++++ ..+.|.+|++.++.........-. .+ ...+.. ..+... +.++.+|+.|+.||.
T Consensus 1257 vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~------~~~~ltggsd~kIR~ 1330 (1431)
T KOG1240|consen 1257 VSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEK------NGFLLTGGSDMKIRK 1330 (1431)
T ss_pred EEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccC------CceeeecCCccceee
Confidence 4444 578899999998853221111100 00 111111 122222 568999999999999
Q ss_pred EEeeeCC
Q 038537 304 WRVKVMP 310 (358)
Q Consensus 304 w~~~~~~ 310 (358)
||.....
T Consensus 1331 wD~~~p~ 1337 (1431)
T KOG1240|consen 1331 WDPTRPE 1337 (1431)
T ss_pred ccCCCcc
Confidence 9987643
No 200
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=2.6e-18 Score=148.08 Aligned_cols=258 Identities=17% Similarity=0.224 Sum_probs=185.0
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
++++|+.|..|+||..++..++....||.+.|+.++. ++..+++++.|..|++|.+..+..+.
T Consensus 204 ~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvs--------------- 268 (1113)
T KOG0644|consen 204 YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVS--------------- 268 (1113)
T ss_pred eEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHH---------------
Confidence 4899999999999999999999999999999998876 45588999999999999999887653
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccC-Cccccccccc-ccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLD-KRCTCVDSFV-AHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
.+.+|++.|++++|+|-. +.+.||++++||.+- ........+. .....+.++.|...+.-+++++.|+.
T Consensus 269 -----vLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 269 -----VLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred -----HHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 558999999999999954 778999999999872 1100101111 12356777888888889999999999
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccc--eeEEEe
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCF--AVLCLV 234 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~ 234 (358)
-..|.+.... .+...+.-+..+. ....+.+++-.+-.+.+|++.++ .......+|.. .++.++
T Consensus 340 a~n~e~~~l~----------~~~~~lif~t~ss-d~~~~~~~ar~~~~~~vwnl~~g----~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 340 ARNHEFEQLA----------WRSNLLIFVTRSS-DLSSIVVTARNDHRLCVWNLYTG----QLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred cccchhhHhh----------hhccceEEEeccc-cccccceeeeeeeEeeeeecccc----hhhhhhcccccceeeeeec
Confidence 8888653211 1111111111111 12245666777788999998873 33333445544 445555
Q ss_pred e-eCCEEEEeeCCCeEEEEEcCCCceeeeeeeee-cCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 235 A-IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVL-DGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 235 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
| +.....+++.||...|||+..+.. +... .+| +.+..-+|+++ |..++....-|.+.|.....
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~p----ik~y~~gh-~kl~d~kFSqd------gts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIP----IKHYFIGH-GKLVDGKFSQD------GTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCc----ceeeeccc-ceeeccccCCC------CceEecCCCCCceEEeccCC
Confidence 5 456777899999999999998843 2222 344 55677789999 77888777778888876543
No 201
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=7.1e-17 Score=139.86 Aligned_cols=233 Identities=14% Similarity=0.054 Sum_probs=156.8
Q ss_pred CCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCC---ceEEEEecccccccccccccccCCCceeeeecCC
Q 038537 8 STRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKD---CKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
+..|.+||..... ...+..|...+....+ +++.|+.++.+ ..|++||+.+++.....
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~----------------- 244 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA----------------- 244 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------
Confidence 4689999986554 4556677777776654 78888877643 47999999876432110
Q ss_pred CccccCCCceEEEEEeCCCCEEEEEe-cCCeEEEE--EccCCcccccccccccccCeEEEEEcCCCCEEEEEe-CCCcEE
Q 038537 83 NTQQQHRDCVSCMAFYHAEGLLYTGS-FDKTVKAW--RVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCS-SDGSVK 158 (358)
Q Consensus 83 ~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~ 158 (358)
.+.+| ...++|+|+|+.|+.++ .+|.+.|| |+.+++ ...+..+...+....|+|+++.|+.++ .+|...
T Consensus 245 -~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~ 317 (429)
T PRK01742 245 -SFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQ 317 (429)
T ss_pred -cCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---eEeeccCCCCcCCEEECCCCCEEEEEECCCCCce
Confidence 11233 33689999999888764 67766655 555554 344455666788999999999777555 578899
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCC
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEK 238 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (358)
+|++.......... .+.. ....|+| +++.|+..+.++ +.+||+.++.... . ..........++|+++
T Consensus 318 I~~~~~~~~~~~~l----~~~~--~~~~~Sp--DG~~ia~~~~~~-i~~~Dl~~g~~~~-l---t~~~~~~~~~~sPdG~ 384 (429)
T PRK01742 318 VYRMSASGGGASLV----GGRG--YSAQISA--DGKTLVMINGDN-VVKQDLTSGSTEV-L---SSTFLDESPSISPNGI 384 (429)
T ss_pred EEEEECCCCCeEEe----cCCC--CCccCCC--CCCEEEEEcCCC-EEEEECCCCCeEE-e---cCCCCCCCceECCCCC
Confidence 99876443222221 1222 4567887 999998887765 6669987743211 1 1111223356899999
Q ss_pred EEEEeeCCCeEEEEEcC--CCceeeeeeeeecCcccceEEEEeecc
Q 038537 239 LIFSGSEDTTIRVWRRA--EGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 239 ~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
+|+.++.++.+.+|++. ++ .....+..|.+.+...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G----~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADG----RFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCC----CceEEccCCCCCCCCcccCCC
Confidence 99999999988888763 34 456677788888999999985
No 202
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1.3e-17 Score=137.49 Aligned_cols=219 Identities=14% Similarity=0.232 Sum_probs=159.1
Q ss_pred eeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEe
Q 038537 21 ERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFY 98 (358)
Q Consensus 21 ~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 98 (358)
..+.+.+|++.|.++.| +|.+|++|+.|-.+.|||.-..+.+.... .+|...|.++.|-
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-------------------TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS-------------------TGHTANIFSVKFV 102 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee-------------------cccccceeEEeee
Confidence 34667899999999998 58899999999999999988666554322 6899999999999
Q ss_pred C--CCCEEEEEecCCeEEEEEccCC--------cccccccccccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEceecCC
Q 038537 99 H--AEGLLYTGSFDKTVKAWRVLDK--------RCTCVDSFVAHESNVNAIVVNQDD-GFVFTCSSDGSVKIWRRVYREN 167 (358)
Q Consensus 99 ~--~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~ 167 (358)
| +.+++++|..|..|+++|+... .......+..|...|..|+-.|++ +.+.++++||+|+-+|++....
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 8 5578999999999999999742 112455567799999999999987 7899999999999999986432
Q ss_pred cce------eeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccc--------------cc-eeecc
Q 038537 168 SHT------LTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH--------------GG-FLQGH 226 (358)
Q Consensus 168 ~~~------~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------------~~-~~~~~ 226 (358)
... ........--...++.++| .+..+|++|+.|-..++||.+.......- .. ...+|
T Consensus 183 c~p~~~~~~~l~ny~~~lielk~ltisp-~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~h 261 (758)
T KOG1310|consen 183 CNPDEDCPSILVNYNPQLIELKCLTISP-SRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGH 261 (758)
T ss_pred CCccccccHHHHHhchhhheeeeeeecC-CCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCcc
Confidence 111 1111122234667888998 46789999999999999996542111100 00 01111
Q ss_pred c-------------ceeEEEeeeCCEEEEeeCCCeEEEEEcCCCce
Q 038537 227 C-------------FAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGC 259 (358)
Q Consensus 227 ~-------------~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 259 (358)
. ..-..++|+|.-|+..-....|+++|+..++.
T Consensus 262 lkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 262 LKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred ccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 1 12245667776666665666799999998753
No 203
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=3.1e-15 Score=125.81 Aligned_cols=240 Identities=14% Similarity=0.173 Sum_probs=150.2
Q ss_pred EEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe-cCCeEEEEEccC
Q 038537 42 LFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS-FDKTVKAWRVLD 120 (358)
Q Consensus 42 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 120 (358)
+++...++.|.+|++.+...+.... . ..+.+....++++|++++|++++ .++.|.+|++..
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~-----------------~-~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~ 66 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQ-----------------V-VDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD 66 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeee-----------------E-EecCCCCccEEECCCCCEEEEEECCCCcEEEEEECC
Confidence 3444679999999996432211111 1 11234467889999999887764 478899999973
Q ss_pred -CcccccccccccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEE
Q 038537 121 -KRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYS 198 (358)
Q Consensus 121 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 198 (358)
+.+....... .......++++|+++++++++. ++.|.+|++.............. +......++++| +++++++
T Consensus 67 ~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p--~g~~l~v 142 (330)
T PRK11028 67 DGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP--DNRTLWV 142 (330)
T ss_pred CCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC--CCCEEEE
Confidence 3322222222 2345678999999998888765 88999999864322222221111 224467788888 8877755
Q ss_pred e-ecCCcEEEEEccCCcCCcc---c-cceeecccceeEEEeeeCCEEEEeeC-CCeEEEEEcCCCceeeeeeeeecCc--
Q 038537 199 G-SSDGSINFWEKDKMSGGFN---H-GGFLQGHCFAVLCLVAIEKLIFSGSE-DTTIRVWRRAEGGCYHECLAVLDGH-- 270 (358)
Q Consensus 199 ~-~~dg~i~i~d~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h-- 270 (358)
+ ..++.|.+||+........ . .....+....-..+++++++++++.. ++.|.+|++.......+.+..+..+
T Consensus 143 ~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~ 222 (330)
T PRK11028 143 PCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA 222 (330)
T ss_pred eeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC
Confidence 4 4569999999976221110 0 01112222334678899999988876 8999999997421111233333221
Q ss_pred ----ccceEEEEeecccceeeeCeEEEEcc-CCCcEEEEEeeeC
Q 038537 271 ----RGPVRCLAASLEMEKVVMGFLVYSSS-LDQTFKVWRVKVM 309 (358)
Q Consensus 271 ----~~~v~~i~~~~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~ 309 (358)
......+.++|+ +++|+++. .++.|.+|++...
T Consensus 223 ~~~~~~~~~~i~~~pd------g~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 223 DFSDTRWAADIHITPD------GRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred cCCCCccceeEEECCC------CCEEEEecCCCCeEEEEEEeCC
Confidence 122346889999 77777764 5789999999643
No 204
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.6e-17 Score=135.74 Aligned_cols=220 Identities=16% Similarity=0.213 Sum_probs=154.8
Q ss_pred CCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccc-cccccCeEEEEEcC--CCCEEEEEeCCCcEE
Q 038537 82 SNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF-VAHESNVNAIVVNQ--DDGFVFTCSSDGSVK 158 (358)
Q Consensus 82 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~ 158 (358)
...+.||++.|+|++|+.+|.+|++|+.|-.+.|||.-..+ .++.+ .+|...|.++.|-| +.+.+++|..|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K--llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK--LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc--eeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 34678999999999999999999999999999999998655 44444 47999999999999 567899999999999
Q ss_pred EEEceecCC------cceeeeeecccCCceeEEEEeecCCC-cEEEEeecCCcEEEEEccCCcCCcccc---c---eeec
Q 038537 159 IWRRVYREN------SHTLTMTLKFQQSSVNALALSSFFDN-YFLYSGSSDGSINFWEKDKMSGGFNHG---G---FLQG 225 (358)
Q Consensus 159 ~wd~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~---~---~~~~ 225 (358)
++|+...+. ..+.......|...|..++..| ++ ..+.++++||+|+-||++.......-. . ....
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p--~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAP--NGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCC--CCCceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 999974221 2233444567888999999988 55 899999999999999999732211110 0 0001
Q ss_pred --ccceeEEEee-eCCEEEEeeCCCeEEEEEcCCCcee-----------e---eeeee-ecCcc--------c---ceEE
Q 038537 226 --HCFAVLCLVA-IEKLIFSGSEDTTIRVWRRAEGGCY-----------H---ECLAV-LDGHR--------G---PVRC 276 (358)
Q Consensus 226 --~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~-----------~---~~~~~-~~~h~--------~---~v~~ 276 (358)
-....+.++| ++.+|++|+.|-..++||.+..... . .++.- ..+|. . -++-
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 1223355566 4689999999999999994321100 0 01111 11222 1 2566
Q ss_pred EEeecccceeeeCeEEEEccCCCcEEEEEeeeCCC
Q 038537 277 LAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPD 311 (358)
Q Consensus 277 i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 311 (358)
+.|+|++. .+|++-+.+ .|+++|+...+.
T Consensus 279 vtfnpNGt-----ElLvs~~gE-hVYlfdvn~~~~ 307 (758)
T KOG1310|consen 279 VTFNPNGT-----ELLVSWGGE-HVYLFDVNEDKS 307 (758)
T ss_pred EEECCCCc-----EEEEeeCCe-EEEEEeecCCCC
Confidence 78999842 566665554 899999987543
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=5.1e-16 Score=137.50 Aligned_cols=240 Identities=16% Similarity=0.248 Sum_probs=164.8
Q ss_pred cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC--CCCEEEEEecCCeEEE
Q 038537 38 HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH--AEGLLYTGSFDKTVKA 115 (358)
Q Consensus 38 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~dg~i~i 115 (358)
-...++++...-.|+|||.+.++.+..+..... -...|+.+.+-. |..++++|+.||.|+|
T Consensus 1075 f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~-----------------~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1075 FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAF-----------------PDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred CCceeEEcCCcceEEEEecccCceeccccCCCC-----------------CCCccceeeeecccchhheeeeccCceEEE
Confidence 456788888777999999998887665543322 345688888865 4458999999999999
Q ss_pred EEccCCc---ccccccccc-------cccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEE
Q 038537 116 WRVLDKR---CTCVDSFVA-------HESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNAL 185 (358)
Q Consensus 116 wd~~~~~---~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~ 185 (358)
|+--... .+.+..+.+ ..+.-.-+.|.....+|++++.-..|+|||.........+ .......++++
T Consensus 1138 wk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di---P~~s~t~vTaL 1214 (1387)
T KOG1517|consen 1138 WKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI---PYGSSTLVTAL 1214 (1387)
T ss_pred ecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec---ccCCCccceee
Confidence 9753321 112222211 1112234577777777887777899999998644322222 22345667777
Q ss_pred EEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccce--eEEEee--eC-CEEEEeeCCCeEEEEEcCCCcee
Q 038537 186 ALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFA--VLCLVA--IE-KLIFSGSEDTTIRVWRRAEGGCY 260 (358)
Q Consensus 186 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~~~ 260 (358)
.-+. ..++++++|..||.|++||.+..... ........|... |..++. .| ..|++|+.||.|++||++....
T Consensus 1215 S~~~-~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~- 1291 (1387)
T KOG1517|consen 1215 SADL-VHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK- 1291 (1387)
T ss_pred cccc-cCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-
Confidence 6654 35899999999999999999974432 333445556555 666554 34 3699999999999999998421
Q ss_pred eeeeeeecCcc--c-ceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 261 HECLAVLDGHR--G-PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 261 ~~~~~~~~~h~--~-~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+-......|. + ..+++..++. ...+|+|+. +.|+||++.-
T Consensus 1292 -e~~~~iv~~~~yGs~lTal~VH~h------apiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1292 -ETFLTIVAHWEYGSALTALTVHEH------APIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred -cccceeeeccccCccceeeeeccC------CCeeeecCc-ceEEEEecCh
Confidence 2222333343 3 5999999999 679999998 9999999874
No 206
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=8.1e-18 Score=135.84 Aligned_cols=245 Identities=15% Similarity=0.187 Sum_probs=175.6
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe-cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA-HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
|+.|+.-|-|-.+|..++.+...+.. ...|.++.| +...+++......+.|||-..-+.-
T Consensus 144 lllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElH------------------ 204 (545)
T KOG1272|consen 144 LLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELH------------------ 204 (545)
T ss_pred EEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEe------------------
Confidence 66778888888888888887766654 456677766 4445555556678888886644321
Q ss_pred CCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW 160 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 160 (358)
.+..| ..|..+.|.|..-+|++++..|.++--|+.+++ .+..+....+.+..++-+|-...+-+|...|+|.+|
T Consensus 205 ---Clk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk--lVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlW 278 (545)
T KOG1272|consen 205 ---CLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK--LVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLW 278 (545)
T ss_pred ---ehhhc-CchhhhcccchhheeeecccCCceEEEeechhh--hhHHHHccCCccchhhcCCccceEEEcCCCceEEec
Confidence 12223 458899999998899999999999999999999 788888888899999999999999999999999999
Q ss_pred EceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEE
Q 038537 161 RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLI 240 (358)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (358)
.... .++...+-.|.++|.++++.+ +|.++++.+.|..++|||++........ ...+... .++.+.+-+
T Consensus 279 SP~s----kePLvKiLcH~g~V~siAv~~--~G~YMaTtG~Dr~~kIWDlR~~~ql~t~---~tp~~a~--~ls~Sqkgl 347 (545)
T KOG1272|consen 279 SPNS----KEPLVKILCHRGPVSSIAVDR--GGRYMATTGLDRKVKIWDLRNFYQLHTY---RTPHPAS--NLSLSQKGL 347 (545)
T ss_pred CCCC----cchHHHHHhcCCCcceEEECC--CCcEEeecccccceeEeeecccccccee---ecCCCcc--ccccccccc
Confidence 9844 444556667999999999998 9999999999999999999984322221 2233333 344444444
Q ss_pred EEeeCCCeEEEEEcC-CCceeeeeeeeecCcccceEEEEeecc
Q 038537 241 FSGSEDTTIRVWRRA-EGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 241 ~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
++.+....|.||.-. .+....+....-....++|.++.|.|-
T Consensus 348 LA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ 390 (545)
T KOG1272|consen 348 LALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPY 390 (545)
T ss_pred eeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccH
Confidence 555555679999432 211000111111112458999999997
No 207
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.2e-14 Score=114.37 Aligned_cols=285 Identities=12% Similarity=0.082 Sum_probs=176.5
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeee-ecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIK-ARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~-~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
+|++..|-.||+||-.. .+...++ .....|.|+++. ...|+.|+.. -|.+|..+..................+
T Consensus 113 fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qv- 189 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQV- 189 (445)
T ss_pred hhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhh-
Confidence 46788899999999766 4444443 345678999883 5678887765 589998764332211100000000000
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEec-CCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF-DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
....+| .+|+++.|.+||..+++++. |..|.|||.+++...++.. ...+.+.-+.|+||+.+|++++-|+.
T Consensus 190 -----l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--~glgg~slLkwSPdgd~lfaAt~dav 261 (445)
T KOG2139|consen 190 -----LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--KGLGGFSLLKWSPDGDVLFAATCDAV 261 (445)
T ss_pred -----eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--cCCCceeeEEEcCCCCEEEEecccce
Confidence 012355 67999999999999999875 5789999999998544442 34567889999999999999999999
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccc----------------
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG---------------- 220 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---------------- 220 (358)
.++|+.... +.. .......+.|....|+| .|.+|+.... |.-++|.+..........
T Consensus 262 frlw~e~q~---wt~-erw~lgsgrvqtacWsp--cGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 262 FRLWQENQS---WTK-ERWILGSGRVQTACWSP--CGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred eeeehhccc---cee-cceeccCCceeeeeecC--CCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 999965322 111 11122356999999999 7776665433 344556544322111111
Q ss_pred ------ceeecccceeEEEeeeCCEEEEeeCCC--------eEEEEEcCCCceeeeeeeeecCcccceEEEEeeccccee
Q 038537 221 ------GFLQGHCFAVLCLVAIEKLIFSGSEDT--------TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKV 286 (358)
Q Consensus 221 ------~~~~~~~~~~~~~~~~~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 286 (358)
..+-+.....++++|.|.+|++.-..+ .|.+||.+......-...-+.+.. .-..|+|+|..+
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge-~P~~IsF~pl~n-- 411 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGE-YPAYISFGPLKN-- 411 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCC-CCceEEeeeccc--
Confidence 011122334466777899998865433 367788776422111111111111 245677777532
Q ss_pred eeCeEEEEccCCCcEEEEEeee
Q 038537 287 VMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 287 ~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
++.+|..+=.-|.+.-|++..
T Consensus 412 -~g~lLsiaWsTGriq~ypl~f 432 (445)
T KOG2139|consen 412 -EGRLLSIAWSTGRIQRYPLTF 432 (445)
T ss_pred -CCcEEEEEeccCceEeeeeEE
Confidence 267888887889999888863
No 208
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.73 E-value=2.7e-16 Score=129.45 Aligned_cols=182 Identities=12% Similarity=0.162 Sum_probs=127.4
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeee----ecccceEEEEe---cCCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIK----ARHGEVRAILA---HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~----~h~~~v~~i~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
|+.|-.-|.|.+.|....+..+.+. .....|+++.| ++..++++-.+|.+.+||...............+...
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~ 267 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGD 267 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCC
Confidence 3455556777777765422222121 12467888877 5668888889999999987533222221111111111
Q ss_pred ee--ee------ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCC
Q 038537 75 SF--LS------FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDG 146 (358)
Q Consensus 75 ~~--~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 146 (358)
.+ .. -.+...+.--.+.|...+|+|||++||+.+.||.+||+|..+.+ .+..++..-+...|++|+|||+
T Consensus 268 ~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e--Llg~mkSYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 268 QFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE--LLGVMKSYFGGLLCVCWSPDGK 345 (636)
T ss_pred eeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH--HHHHHHhhccceEEEEEcCCcc
Confidence 11 11 01222233345589999999999999999999999999999887 5555555567899999999999
Q ss_pred EEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEee
Q 038537 147 FVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSS 189 (358)
Q Consensus 147 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 189 (358)
+|++|++|..|.||.+ ........-.+|.+.|..++|.|
T Consensus 346 yIvtGGEDDLVtVwSf----~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSF----EERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEecCCcceEEEEEe----ccceEEEeccccccceeeEeecc
Confidence 9999999999999998 44556677789999999999986
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.73 E-value=2.4e-16 Score=133.16 Aligned_cols=229 Identities=14% Similarity=0.203 Sum_probs=164.2
Q ss_pred ceEEEE--ecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe
Q 038537 31 EVRAIL--AHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS 108 (358)
Q Consensus 31 ~v~~i~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 108 (358)
.|..++ ++|..|+.+.. ..+.+||.+.+..+. ++++|.+.|.|++|+.+|+.+++|+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llq--------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ--------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccccc--------------------ccccccceEEEEEEccCCceeccCC
Confidence 455554 57887777664 479999999887653 5689999999999999999999999
Q ss_pred cCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEe
Q 038537 109 FDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALS 188 (358)
Q Consensus 109 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 188 (358)
.|..|.+|+..-.. +.. ..|.+.|.|+.|+|-...+++++-. ..-+|......... ......+.+++|.
T Consensus 73 aDK~VI~W~~klEG---~Lk-YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K------~kss~R~~~CsWt 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEG---ILK-YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSK------HKSSSRIICCSWT 141 (1081)
T ss_pred CceeEEEecccccc---eee-eccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHh------hhhheeEEEeeec
Confidence 99999999864322 222 3699999999999999989888754 36678753222111 1124567777787
Q ss_pred ecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eee-----CCEEEEeeCCCeEEEEEcCCCceee
Q 038537 189 SFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAI-----EKLIFSGSEDTTIRVWRRAEGGCYH 261 (358)
Q Consensus 189 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~ 261 (358)
. ||.+++.|-.+|+|.+-+-... .........+...++.++ +|. ...+++.....++.+|.+...
T Consensus 142 n--DGqylalG~~nGTIsiRNk~gE--ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~---- 213 (1081)
T KOG1538|consen 142 N--DGQYLALGMFNGTISIRNKNGE--EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK---- 213 (1081)
T ss_pred C--CCcEEEEeccCceEEeecCCCC--cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce----
Confidence 6 9999999999999999754331 112222233445555444 443 258888889999999988753
Q ss_pred eeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 262 ECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 262 ~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
.+..-+.-.-.-.|+++.++ |.+++.||.|+.+.+|.-
T Consensus 214 -~Igk~r~L~FdP~CisYf~N------GEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 214 -QIGKDRALNFDPCCISYFTN------GEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred -eecccccCCCCchhheeccC------CcEEEEccCCCceEEEee
Confidence 33322223334568899999 889999999999998753
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.4e-16 Score=126.04 Aligned_cols=198 Identities=19% Similarity=0.222 Sum_probs=142.7
Q ss_pred ceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecC
Q 038537 31 EVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD 110 (358)
Q Consensus 31 ~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 110 (358)
.+.++..++..+++++.||++|||+..+...+. ....|...|.++.|+|||++|++-+.|
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l--------------------~e~~~~~eV~DL~FS~dgk~lasig~d 207 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL--------------------EEIAHHAEVKDLDFSPDGKFLASIGAD 207 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh--------------------hhHhhcCccccceeCCCCcEEEEecCC
Confidence 344555678899999999999999987665442 235788999999999999999999999
Q ss_pred CeEEEEEccCCccccccccc--ccccCeEEEEEcCCC---CE--EEEEeCCCcEEEEEceecCCcceee-eeecccCCce
Q 038537 111 KTVKAWRVLDKRCTCVDSFV--AHESNVNAIVVNQDD---GF--VFTCSSDGSVKIWRRVYRENSHTLT-MTLKFQQSSV 182 (358)
Q Consensus 111 g~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~---~~--l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~~~~~i 182 (358)
..+||+.+++. ++.... ..+.....+.|+.++ .+ ++....-+.|+.||+........+. ...-.....|
T Consensus 208 -~~~VW~~~~g~--~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~si 284 (398)
T KOG0771|consen 208 -SARVWSVNTGA--ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSI 284 (398)
T ss_pred -ceEEEEeccCc--hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcc
Confidence 89999999985 444433 233456677787766 32 3333345678888875443321111 1111234589
Q ss_pred eEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEeeeCCEEEEeeCCCeEEEEEcCC
Q 038537 183 NALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAE 256 (358)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~ 256 (358)
.++++++ +|++++.|+.||.|.+++..+.+.... ....|...| +.|+|+.+++++.+.+....+..+.-
T Consensus 285 Ssl~VS~--dGkf~AlGT~dGsVai~~~~~lq~~~~---vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 285 SSLAVSD--DGKFLALGTMDGSVAIYDAKSLQRLQY---VKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeEEEcC--CCcEEEEeccCCcEEEEEeceeeeeEe---ehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999998 999999999999999999887543222 244566666 45678889999998898888887754
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=4.7e-15 Score=116.79 Aligned_cols=223 Identities=11% Similarity=0.144 Sum_probs=157.6
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCc--eEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDC--KIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
|..|+.|| -++++................|.-+.|...++|..+.+. .+++.++.....+...
T Consensus 20 lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~-------------- 84 (391)
T KOG2110|consen 20 LSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI-------------- 84 (391)
T ss_pred EEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEE--------------
Confidence 56777777 677776654442222233345666778888877776543 4888888766544321
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccc---ccccCeEEEEEcCCCCEEEEEe--CC
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFV---AHESNVNAIVVNQDDGFVFTCS--SD 154 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~--~d 154 (358)
--..+|.++.++ .+.|+++-.+. |.|||+++.+ .++++. .+...+.++++++.+.+++.-+ ..
T Consensus 85 -------~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mk--lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 85 -------FFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMK--LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred -------ecCCceEEEEEc--cceEEEEEccc-EEEEecccce--eehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 234568888884 45677666654 9999999887 666654 3455577777776777877543 36
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCc-EEEEEccCCcCCccccceeecccceeEEE
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGS-INFWEKDKMSGGFNHGGFLQGHCFAVLCL 233 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 233 (358)
|.|.+||.. ..+....+..|.+.+.+++|++ +|.+||+++..|+ |++|.+..+....++.+-...-....++|
T Consensus 153 GdV~l~d~~----nl~~v~~I~aH~~~lAalafs~--~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F 226 (391)
T KOG2110|consen 153 GDVVLFDTI----NLQPVNTINAHKGPLAALAFSP--DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF 226 (391)
T ss_pred ceEEEEEcc----cceeeeEEEecCCceeEEEECC--CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE
Confidence 899999984 4445566778999999999999 9999999999987 68999988665555443333333334677
Q ss_pred eeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 234 VAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 234 ~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
++++++|++.+..++|++|.+...
T Consensus 227 s~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 227 SPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCCeEEEecCCCeEEEEEeccc
Confidence 788999999999999999988653
No 212
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=2.7e-16 Score=129.52 Aligned_cols=204 Identities=14% Similarity=0.119 Sum_probs=152.5
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
++.++.||.+.|.+ +.++....+.+|.+.+.+-.| +|.-|+++++||.|++|.-...-.
T Consensus 78 ~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLR------------------ 138 (737)
T KOG1524|consen 78 LLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLR------------------ 138 (737)
T ss_pred EEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHH------------------
Confidence 67788999999987 566777888999999998766 688999999999999998654321
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
.++.....+|.|++|.|+...++.+.. +.+.|=.+.... .+...+.|.+-|.++.|++..+.+++|++|-..++
T Consensus 139 ---Stl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL~~n~--k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 139 ---STVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPLAANS--KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKI 212 (737)
T ss_pred ---HHHhhcCceeEEEEECCCCCceEEecC-CeEEEeeccccc--ceeEEeccCcEEEEeecCccccceeecCCceeEEe
Confidence 133456778999999998876665433 456666665554 56677899999999999999999999999999999
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCE
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKL 239 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (358)
||-. .........|..+|++++|.| + ..++.++.+ ++++ ++ ......--.++++||..
T Consensus 213 WD~~-----G~~Lf~S~~~ey~ITSva~np--d-~~~~v~S~n-t~R~---~~----------p~~GSifnlsWS~DGTQ 270 (737)
T KOG1524|consen 213 WDAQ-----GANLFTSAAEEYAITSVAFNP--E-KDYLLWSYN-TARF---SS----------PRVGSIFNLSWSADGTQ 270 (737)
T ss_pred eccc-----CcccccCChhccceeeeeecc--c-cceeeeeee-eeee---cC----------CCccceEEEEEcCCCce
Confidence 9952 233455567899999999998 6 666666543 3331 11 11112223566778999
Q ss_pred EEEeeCCCeEEEE
Q 038537 240 IFSGSEDTTIRVW 252 (358)
Q Consensus 240 l~~~~~dg~i~iw 252 (358)
++.|+..|.+.+=
T Consensus 271 ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 271 ATCGTSTGQLIVA 283 (737)
T ss_pred eeccccCceEEEe
Confidence 9999999987653
No 213
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=4.5e-16 Score=126.62 Aligned_cols=261 Identities=15% Similarity=0.207 Sum_probs=187.3
Q ss_pred eeeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEe
Q 038537 21 ERGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFY 98 (358)
Q Consensus 21 ~~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 98 (358)
....+..|.+.|..+.|+ |..|++|+.|..|.+||.........+. .+|...|....|-
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~-------------------SGH~~NvfQaKFi 194 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE-------------------SGHCNNVFQAKFI 194 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc-------------------cccccchhhhhcc
Confidence 345678899999999995 8899999999999999998776543322 6888888888888
Q ss_pred CC--CCEEEEEecCCeEEEEEccCCc-ccccccccccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEceecCCcceeeee
Q 038537 99 HA--EGLLYTGSFDKTVKAWRVLDKR-CTCVDSFVAHESNVNAIVVNQDD-GFVFTCSSDGSVKIWRRVYRENSHTLTMT 174 (358)
Q Consensus 99 ~~--~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 174 (358)
|. .+.+++++.||.+++=.+.... ......+..|.++|..++.-|+. ..|.+++.|+.+.-+|++.+.....+..
T Consensus 195 P~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~c- 273 (559)
T KOG1334|consen 195 PFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVC- 273 (559)
T ss_pred CCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeee-
Confidence 73 4579999999999998775433 33355667899999999999954 5688999999999999988766555542
Q ss_pred ecccCC---ceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCc--------cccceeecccceeEEEee--eCCEEE
Q 038537 175 LKFQQS---SVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGF--------NHGGFLQGHCFAVLCLVA--IEKLIF 241 (358)
Q Consensus 175 ~~~~~~---~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~~~~~~~~~~~~--~~~~l~ 241 (358)
.+.+.. ....++..| .+...+++++.|..+++||.+...... ............|+++.+ ++.-|.
T Consensus 274 r~~~~~~~v~L~~Ia~~P-~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL 352 (559)
T KOG1334|consen 274 READEKERVGLYTIAVDP-RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL 352 (559)
T ss_pred eccCCccceeeeeEecCC-CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee
Confidence 222333 567888888 466799999999999999988732210 001111133445566654 466666
Q ss_pred EeeCCCeEEEEEcCCCce--------eeeee-eeecCccc--ceEEEEee-cccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 242 SGSEDTTIRVWRRAEGGC--------YHECL-AVLDGHRG--PVRCLAAS-LEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 242 ~~~~dg~i~iwd~~~~~~--------~~~~~-~~~~~h~~--~v~~i~~~-~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
++..|-.|+++.-..+.. ....+ ..+++|.. .|.++-|- |. ..++++||.-|.|.||+-..
T Consensus 353 aSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPr------sEyVvSGSDCGhIFiW~K~t 425 (559)
T KOG1334|consen 353 ASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPR------SEYVVSGSDCGHIFIWDKKT 425 (559)
T ss_pred eeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCc------cceEEecCccceEEEEecch
Confidence 667788899995433211 00122 23778865 46666654 55 57999999999999999664
No 214
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.69 E-value=5.6e-14 Score=108.71 Aligned_cols=182 Identities=14% Similarity=0.225 Sum_probs=135.9
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEeccc-ccccccccccccCCCceeeeecCCCcccc
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTV-SDNFRTKKVTTLPRRSSFLSFSKSNTQQQ 87 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (358)
..|.|||-...+++..+. -..+|.++....+.+++.- .+.|.||.... .+.+...... .
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~------------------~ 134 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETR------------------S 134 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecc------------------c
Confidence 579999966666666654 4678999999999888876 46899999884 3333322211 1
Q ss_pred CCCceEEEEEeCCCCEEEE-EecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc-EEEEEceec
Q 038537 88 HRDCVSCMAFYHAEGLLYT-GSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS-VKIWRRVYR 165 (358)
Q Consensus 88 h~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~ 165 (358)
....+.+++-+.+..+||. |-.-|.|.|-|+...+......+.+|.+.|.|++.+.+|..+|+++..|+ |||||..++
T Consensus 135 NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g 214 (346)
T KOG2111|consen 135 NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG 214 (346)
T ss_pred CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC
Confidence 2222444433334445554 44569999999987764335677899999999999999999999999997 699999888
Q ss_pred CCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCc
Q 038537 166 ENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMS 214 (358)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 214 (358)
+...++.. ......|.+++|+| +..+|++++..|+++||.++...
T Consensus 215 ~~l~E~RR--G~d~A~iy~iaFSp--~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 215 TLLQELRR--GVDRADIYCIAFSP--NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cEeeeeec--CCchheEEEEEeCC--CccEEEEEcCCCeEEEEEeecCC
Confidence 76665543 22457899999999 99999999999999999998743
No 215
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=7e-15 Score=116.61 Aligned_cols=211 Identities=11% Similarity=0.107 Sum_probs=151.2
Q ss_pred ccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCc--ccccccccccccCeEEEEEcCCC-CEEEEEeCC--CcEEEE
Q 038537 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR--CTCVDSFVAHESNVNAIVVNQDD-GFVFTCSSD--GSVKIW 160 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d--g~i~~w 160 (358)
.....+|..++.. ...|++|-.+|.+.+|..+.+. -..+..+..+ ..+..+.-++.. ..+++|+.. ..+.+|
T Consensus 102 ~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred ccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence 3455667666664 3468888999999999988543 1123333333 456666666644 455668888 889999
Q ss_pred EceecCCcceeeeeecc-----cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee
Q 038537 161 RRVYRENSHTLTMTLKF-----QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA 235 (358)
Q Consensus 161 d~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (358)
|+......+.-...... -.-.++.+.|.+......|++++.-+.+++||.+.+..+.... .+..+....+.+.|
T Consensus 179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f-d~~E~~is~~~l~p 257 (412)
T KOG3881|consen 179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF-DFLENPISSTGLTP 257 (412)
T ss_pred ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEe-ccccCcceeeeecC
Confidence 99766433322111100 1235677788873337899999999999999999754433332 23455566677789
Q ss_pred eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 236 IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 236 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
+++++++|..-|.+..||++.++ -....+++-.+.|++|..+|. +.+|+++|-|..|||+|+++.
T Consensus 258 ~gn~Iy~gn~~g~l~~FD~r~~k---l~g~~~kg~tGsirsih~hp~------~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 258 SGNFIYTGNTKGQLAKFDLRGGK---LLGCGLKGITGSIRSIHCHPT------HPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred CCcEEEEecccchhheecccCce---eeccccCCccCCcceEEEcCC------CceEEeeccceeEEEeecccc
Confidence 99999999999999999999984 233348889999999999999 789999999999999999973
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=7.4e-15 Score=121.11 Aligned_cols=203 Identities=17% Similarity=0.203 Sum_probs=144.1
Q ss_pred CCCCEEEEEecCCeEEEEEccCCccccccccc--ccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcc------
Q 038537 99 HAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFV--AHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSH------ 169 (358)
Q Consensus 99 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~------ 169 (358)
|.+--|+.|-..|.|.+.|....+...+.... -....|+|+.|-| +...++++-.+|.+++||........
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 45666888888899999998764421211111 1247899999999 55677888899999999753211100
Q ss_pred ------------------eeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeE
Q 038537 170 ------------------TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL 231 (358)
Q Consensus 170 ------------------~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 231 (358)
.+..........|...+|+| |+.+||+.+.||.++|||..++.........+. ..-++
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~--DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFG--GLLCv 338 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP--DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFG--GLLCV 338 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcC--CCceEEEEecCceEEEeeccHHHHHHHHHhhcc--ceEEE
Confidence 11111223345788899998 999999999999999999988432222111111 23456
Q ss_pred EEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceee------------------------
Q 038537 232 CLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVV------------------------ 287 (358)
Q Consensus 232 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~------------------------ 287 (358)
|++|||++|++|++|-.|.||.+... +.+..-.+|...|+.++|.|-.....
T Consensus 339 cWSPDGKyIvtGGEDDLVtVwSf~er----RVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~ 414 (636)
T KOG2394|consen 339 CWSPDGKYIVTGGEDDLVTVWSFEER----RVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRAN 414 (636)
T ss_pred EEcCCccEEEecCCcceEEEEEeccc----eEEEeccccccceeeEeecccccccccccccccccccccchhcccccccC
Confidence 77889999999999999999999987 67888889999999999984100000
Q ss_pred ------------------eCeEEEEccCCCcEEEEEeeeC
Q 038537 288 ------------------MGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 288 ------------------~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
....|.+.+.|-.+.+||+...
T Consensus 415 ~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 415 GTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred CCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 1247889999999999999853
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.65 E-value=6.1e-13 Score=111.85 Aligned_cols=272 Identities=13% Similarity=0.064 Sum_probs=163.8
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEE--EEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRA--ILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~--i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
+++-..+|.|.+.|..+.+.+..+......-.. ++.+++++++++.||.|.++|+.+.+.+.....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~------------ 76 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV------------ 76 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-------------
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec------------
Confidence 345667899999999999999998875543222 345789999999999999999999887655432
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEe-cCCeEEEEEccCCcccccccccc-------cccCeEEEEEcCCCCEEEEE
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGS-FDKTVKAWRVLDKRCTCVDSFVA-------HESNVNAIVVNQDDGFVFTC 151 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~ 151 (358)
.....+++++++|++++++. .++.+.++|.++.+ .+..+.. ....+..+..+|....++..
T Consensus 77 ---------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle--~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 77 ---------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE--PVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp ---------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred ---------CCCcceEEEcCCCCEEEEEecCCCceeEecccccc--ceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 22357899999999988775 68999999998877 4554432 23567888888888866655
Q ss_pred eC-CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEe-ecCCcEEEEEccCCcCCcc-----------
Q 038537 152 SS-DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSG-SSDGSINFWEKDKMSGGFN----------- 218 (358)
Q Consensus 152 ~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~----------- 218 (358)
-. .+.|.+.|...... +...............|+| ++++++++ ..+..|.++|..+......
T Consensus 146 lkd~~~I~vVdy~d~~~---~~~~~i~~g~~~~D~~~dp--dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~ 220 (369)
T PF02239_consen 146 LKDTGEIWVVDYSDPKN---LKVTTIKVGRFPHDGGFDP--DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGP 220 (369)
T ss_dssp ETTTTEEEEEETTTSSC---EEEEEEE--TTEEEEEE-T--TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETT
T ss_pred EccCCeEEEEEeccccc---cceeeecccccccccccCc--ccceeeecccccceeEEEeeccceEEEEeeccccccccc
Confidence 55 48888877654322 2222222345567788887 88876654 4466777777665311100
Q ss_pred ----------------------------------------ccceeecccc-eeEEEeeeCCEEEEe----eCCCeEEEEE
Q 038537 219 ----------------------------------------HGGFLQGHCF-AVLCLVAIEKLIFSG----SEDTTIRVWR 253 (358)
Q Consensus 219 ----------------------------------------~~~~~~~~~~-~~~~~~~~~~~l~~~----~~dg~i~iwd 253 (358)
....+..... --...+|+++++++. ...+.|.++|
T Consensus 221 ~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD 300 (369)
T PF02239_consen 221 GANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVID 300 (369)
T ss_dssp EEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred cccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEE
Confidence 0000000001 113446777888877 4568899999
Q ss_pred cCCCceeeeeeeeecCc-ccceEEEEeecccceeeeCeEEE-Ecc-CCCcEEEEEeeeCCC
Q 038537 254 RAEGGCYHECLAVLDGH-RGPVRCLAASLEMEKVVMGFLVY-SSS-LDQTFKVWRVKVMPD 311 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~~~~~~~~~l~-s~~-~dg~v~iw~~~~~~~ 311 (358)
.++. +.+..+... ...+..+.|+++ |+.+. |.- .+|.|.+||..+.+.
T Consensus 301 ~~tl----~~~~~i~~~~~~~~~h~ef~~d------G~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 301 KKTL----KVVKTITPGPGKRVVHMEFNPD------GKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp CCGT----EEEE-HHHHHT--EEEEEE-TT------SSEEEEEEE--TTEEEEEETTTTEE
T ss_pred CcCc----ceeEEEeccCCCcEeccEECCC------CCEEEEEEecCCCEEEEEECCCcEE
Confidence 9997 444454322 235899999999 55443 333 333799999886543
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=2e-14 Score=114.13 Aligned_cols=193 Identities=15% Similarity=0.146 Sum_probs=146.7
Q ss_pred EEeeeCCCcEEEEeCCCce----eeeeeeecccceEEEEe---cCCEEEEEeCC--ceEEEEecccccccccccccccCC
Q 038537 2 VFTGSSSTRIRVWRQPDCV----ERGFIKARHGEVRAILA---HDNMLFTTNKD--CKIRIWNFTVSDNFRTKKVTTLPR 72 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~----~~~~~~~h~~~v~~i~~---~~~~l~s~~~d--g~i~iw~~~~~~~~~~~~~~~~~~ 72 (358)
|++|-.+|.+.+|..+.+. ....+..+ ..+..+.- ++..+++|+.. ..++|||++..+.+...+.. +.
T Consensus 118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv--pn 194 (412)
T KOG3881|consen 118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV--PN 194 (412)
T ss_pred EEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC--CC
Confidence 6788899999999987433 22223333 33444432 46688889999 89999999988665443321 11
Q ss_pred CceeeeecCCCccccCCCceEEEEEeCC--CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEE
Q 038537 73 RSSFLSFSKSNTQQQHRDCVSCMAFYHA--EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFT 150 (358)
Q Consensus 73 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 150 (358)
...- -.-.-.++++.|.+. ...|++++.-+.+++||.+.++ .++..+.-.+.+++++...|+++++++
T Consensus 195 D~L~---------LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~ 264 (412)
T KOG3881|consen 195 DRLG---------LRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYT 264 (412)
T ss_pred cccc---------ceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEE
Confidence 1000 011234678889886 7899999999999999999766 467777777889999999999999999
Q ss_pred EeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 151 CSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 151 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
|..-|.+..||++.+.. ....+++..+.|+++..+| ...++++++.|+.++|+|+.+
T Consensus 265 gn~~g~l~~FD~r~~kl---~g~~~kg~tGsirsih~hp--~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 265 GNTKGQLAKFDLRGGKL---LGCGLKGITGSIRSIHCHP--THPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred ecccchhheecccCcee---eccccCCccCCcceEEEcC--CCceEEeeccceeEEEeeccc
Confidence 99999999999975542 3334677789999999998 889999999999999999988
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=2.7e-13 Score=117.37 Aligned_cols=232 Identities=12% Similarity=0.010 Sum_probs=146.7
Q ss_pred cEEEEeCCCceeeeeeeecccceEEE--EecCCEEEEEe---CCceEEEEecccccccccccccccCCCceeeeecCCCc
Q 038537 10 RIRVWRQPDCVERGFIKARHGEVRAI--LAHDNMLFTTN---KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNT 84 (358)
Q Consensus 10 ~v~vw~~~~~~~~~~~~~h~~~v~~i--~~~~~~l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
.|.+||...... ..+..+...+... +++|+.|+..+ .+..|.+|++.+++....
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-------------------- 238 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-------------------- 238 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc--------------------
Confidence 688898876544 3334455566655 45788777654 245799999887643211
Q ss_pred cccCCCceEEEEEeCCCCEEEEE-ecCC--eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC-CcEEEE
Q 038537 85 QQQHRDCVSCMAFYHAEGLLYTG-SFDK--TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD-GSVKIW 160 (358)
Q Consensus 85 ~~~h~~~v~~~~~~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~~w 160 (358)
......+....|+|+|+.|+.. +.+| .|.+||+.+++. ..+..+...+....|+|+++.|+..+.+ +...+|
T Consensus 239 -~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~---~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy 314 (429)
T PRK03629 239 -ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI---RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVY 314 (429)
T ss_pred -cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE---EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEE
Confidence 1112224468999999988764 4444 588999988762 2333344567889999999988777654 455555
Q ss_pred --EceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC---CcEEEEEccCCcCCccccceeecccceeEEEee
Q 038537 161 --RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD---GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA 235 (358)
Q Consensus 161 --d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (358)
|+..+. .. .+...........|+| ++++|+..+.+ ..|.+||+.++... .+. .........++|
T Consensus 315 ~~d~~~g~-~~----~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt---~~~~~~~p~~Sp 383 (429)
T PRK03629 315 KVNINGGA-PQ----RITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT---DTFLDETPSIAP 383 (429)
T ss_pred EEECCCCC-eE----EeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeE-EeC---CCCCCCCceECC
Confidence 443332 11 1122334456788888 89888876543 35888898764311 111 111222356889
Q ss_pred eCCEEEEeeCCCe---EEEEEcCCCceeeeeeeeecCcccceEEEEeecc
Q 038537 236 IEKLIFSGSEDTT---IRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 236 ~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
+|+.|+.++.++. ++++++... ....+.+|.+.+...+|+|-
T Consensus 384 DG~~i~~~s~~~~~~~l~~~~~~G~-----~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 384 NGTMVIYSSSQGMGSVLNLVSTDGR-----FKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCC-----CeEECccCCCCcCCcccCCC
Confidence 9999998887764 677787543 34556678888999999873
No 220
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.63 E-value=1.6e-13 Score=105.03 Aligned_cols=270 Identities=11% Similarity=0.118 Sum_probs=176.6
Q ss_pred CCcEEEEeCCCceeee---eeeecccceEEEEe-----cCC-EEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 8 STRIRVWRQPDCVERG---FIKARHGEVRAILA-----HDN-MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~---~~~~h~~~v~~i~~-----~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
.|.+.++++.+.+... .....+..+..+.| ++. .++-+-.+|.|.++............ .
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~--~--------- 113 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLR--G--------- 113 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeec--c---------
Confidence 4678889887655443 12223344555544 344 56667788999998876433211100 0
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSV 157 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 157 (358)
.....-......++.|++.+..++++..+|.+.+-+......+.++..+.|.-++....|+. +.+.+.+|+.|+.+
T Consensus 114 ---ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l 190 (339)
T KOG0280|consen 114 ---LSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSL 190 (339)
T ss_pred ---cchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceE
Confidence 00001111135678899999999999999999987777777667778999999999999986 55789999999999
Q ss_pred EEEEceecCCcceee-eeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeee
Q 038537 158 KIWRRVYRENSHTLT-MTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI 236 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (358)
..||++... +.. ...+.|...|.++.-+| +.+.++++|+.|-.|++||.++...+..... . .+.|..+...
T Consensus 191 ~~~D~R~p~---~~i~~n~kvH~~GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v---~GGVWRi~~~ 262 (339)
T KOG0280|consen 191 SCWDIRIPK---TFIWHNSKVHTSGVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAK-V---GGGVWRIKHH 262 (339)
T ss_pred EEEEecCCc---ceeeecceeeecceEEEecCC-CCCceEEEeccccceeeeehhcccCccccCc-c---ccceEEEEec
Confidence 999998332 222 22456889999999888 5788999999999999999997554433221 1 1344333322
Q ss_pred ----CCEEEEeeCCCeEEEEEcCCCcee-eeeeeeecCcccceEEEEeecccceeeeCeEEEEcc-CCCcEE-EEEe
Q 038537 237 ----EKLIFSGSEDTTIRVWRRAEGGCY-HECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSS-LDQTFK-VWRV 306 (358)
Q Consensus 237 ----~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~-~dg~v~-iw~~ 306 (358)
..+++++-.+| .+|-+...+... .......+.|.+-...-.|... ..+|+|++ .|..++ +|-.
T Consensus 263 p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~------~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 263 PEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK------DSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred chhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc------cceeeeeeccccceeeeeee
Confidence 23444444444 677777665431 1134555677777777777544 45788876 566655 6744
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=6.2e-16 Score=125.14 Aligned_cols=197 Identities=17% Similarity=0.219 Sum_probs=155.1
Q ss_pred eEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCccee
Q 038537 92 VSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTL 171 (358)
Q Consensus 92 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 171 (358)
-..+.++.+|+.|+.|+.-|.|-.+|..+++ ....+. -...|.++.|..+.++++++ ....+++||-. ..-
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~--L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-----GtE 202 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK--LHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-----GTE 202 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccce--eeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCC-----CcE
Confidence 4678899999999999999999999999988 333333 35678999999887777765 67789999842 111
Q ss_pred eeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEE
Q 038537 172 TMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRV 251 (358)
Q Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 251 (358)
..-++ ....+..+.|.| ..-+|++++..|.++.-|+..++....+. .......+.+-.|.+..+-+|..+|+|.+
T Consensus 203 lHClk-~~~~v~rLeFLP--yHfLL~~~~~~G~L~Y~DVS~GklVa~~~--t~~G~~~vm~qNP~NaVih~GhsnGtVSl 277 (545)
T KOG1272|consen 203 LHCLK-RHIRVARLEFLP--YHFLLVAASEAGFLKYQDVSTGKLVASIR--TGAGRTDVMKQNPYNAVIHLGHSNGTVSL 277 (545)
T ss_pred Eeehh-hcCchhhhcccc--hhheeeecccCCceEEEeechhhhhHHHH--ccCCccchhhcCCccceEEEcCCCceEEe
Confidence 22222 246788999998 78899999999999999999854332221 12223345566677789999999999999
Q ss_pred EEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCC
Q 038537 252 WRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQ 312 (358)
Q Consensus 252 wd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 312 (358)
|..... +++..+-.|.++|.+|++.++ |++++|.|.|..++|||+++..+.
T Consensus 278 WSP~sk----ePLvKiLcH~g~V~siAv~~~------G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 278 WSPNSK----EPLVKILCHRGPVSSIAVDRG------GRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred cCCCCc----chHHHHHhcCCCcceEEECCC------CcEEeecccccceeEeeecccccc
Confidence 999887 677788899999999999999 999999999999999999986533
No 222
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2e-13 Score=113.75 Aligned_cols=266 Identities=15% Similarity=0.218 Sum_probs=178.5
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeec-ccceEEEEe---cCCEEEEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKAR-HGEVRAILA---HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h-~~~v~~i~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
++|||.+--.|++||+.+..+ .+..| .+.+..+.+ |-..++--..|.+|.+-..... ... .
T Consensus 66 ~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~-hy~-~----------- 130 (703)
T KOG2321|consen 66 LLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR-HYR-T----------- 130 (703)
T ss_pred EEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhcCe-eee-e-----------
Confidence 478888888999999876543 22233 333444432 2223444455666655432211 000 0
Q ss_pred eeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
.-...-..++++.-..-|+.++....|+-++++.++ .+..+....+.++++..++...+|++|+.+|.
T Consensus 131 ----------RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGr--fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 131 ----------RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGR--FLNPFETDSGELNVVSINEEHGLLACGTEDGV 198 (703)
T ss_pred ----------ecCcCCccccccCCCccEEEeecCcceEEEEccccc--cccccccccccceeeeecCccceEEecccCce
Confidence 011123456665433345555556679999999998 67777777789999999999999999999999
Q ss_pred EEEEEceecCCcceeeeee--cccC-----CceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccce
Q 038537 157 VKIWRRVYRENSHTLTMTL--KFQQ-----SSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFA 229 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~--~~~~-----~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 229 (358)
|-.||.+.......+.... ..+. ..|+++.|.. +|-.+++|..+|.+.|||++...+.... ..+...+
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d--~gL~~aVGts~G~v~iyDLRa~~pl~~k---dh~~e~p 273 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD--DGLHVAVGTSTGSVLIYDLRASKPLLVK---DHGYELP 273 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecC--CceeEEeeccCCcEEEEEcccCCceeec---ccCCccc
Confidence 9999998776554443222 1222 3499999986 7999999999999999999984432221 3344556
Q ss_pred eEEEeee----CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 230 VLCLVAI----EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 230 ~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
+..+.+. ++.+++. ....++|||-.++ ++...+.. ...++.+++-|+ +.+++++-.++.+..|=
T Consensus 274 i~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G----k~~asiEp-t~~lND~C~~p~------sGm~f~Ane~~~m~~yy 341 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSM-DKRILKIWDECTG----KPMASIEP-TSDLNDFCFVPG------SGMFFTANESSKMHTYY 341 (703)
T ss_pred eeeecccccCCCceEEec-chHHhhhcccccC----Cceeeccc-cCCcCceeeecC------CceEEEecCCCcceeEE
Confidence 6666662 3455554 4577999999999 44555543 455999999999 77999999988888887
Q ss_pred eeeCC
Q 038537 306 VKVMP 310 (358)
Q Consensus 306 ~~~~~ 310 (358)
+..+.
T Consensus 342 iP~LG 346 (703)
T KOG2321|consen 342 IPSLG 346 (703)
T ss_pred ccccC
Confidence 76543
No 223
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=9.4e-13 Score=114.05 Aligned_cols=195 Identities=14% Similarity=0.044 Sum_probs=124.6
Q ss_pred cCCCceEEEEEeCCCCEEEEEec---CCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEE-eCCC--cEEEE
Q 038537 87 QHRDCVSCMAFYHAEGLLYTGSF---DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC-SSDG--SVKIW 160 (358)
Q Consensus 87 ~h~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~~w 160 (358)
.+...+...+|+|+|+.|+..+. +..|.+|++.+++...+..+.+ .+....|+|||+.|+.. +.+| .|++|
T Consensus 196 ~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~---~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 196 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPR---HNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCC---CcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 45567899999999998886543 3579999998876434444433 34568999999988765 4455 48888
Q ss_pred EceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC-CcEEEE--EccCCcCCccccceeecccceeEEEeeeC
Q 038537 161 RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD-GSINFW--EKDKMSGGFNHGGFLQGHCFAVLCLVAIE 237 (358)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-g~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (358)
|+.++.. ..+..+...+....|+| +++.|+..+.+ +...+| |+.... .... ...+......+++|+|
T Consensus 273 d~~tg~~-----~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~l-t~~~~~~~~~~~SpDG 342 (429)
T PRK03629 273 DLASGQI-----RQVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRPQVYKVNINGGA--PQRI-TWEGSQNQDADVSSDG 342 (429)
T ss_pred ECCCCCE-----EEccCCCCCcCceEECC--CCCEEEEEeCCCCCceEEEEECCCCC--eEEe-ecCCCCccCEEECCCC
Confidence 9865432 12222344677889998 89888776653 444555 554421 1111 1122223346788999
Q ss_pred CEEEEeeCC---CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCc---EEEEEe
Q 038537 238 KLIFSGSED---TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQT---FKVWRV 306 (358)
Q Consensus 238 ~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~---v~iw~~ 306 (358)
++|+..+.+ ..|++||+.+++. +.+. .. .......|+|+ |++|+.++.++. +.++++
T Consensus 343 ~~Ia~~~~~~g~~~I~~~dl~~g~~--~~Lt--~~--~~~~~p~~SpD------G~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 343 KFMVMVSSNGGQQHIAKQDLATGGV--QVLT--DT--FLDETPSIAPN------GTMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CEEEEEEccCCCceEEEEECCCCCe--EEeC--CC--CCCCCceECCC------CCEEEEEEcCCCceEEEEEEC
Confidence 988776543 3588899988742 2222 11 12346789999 888888888776 444444
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=4.9e-13 Score=116.30 Aligned_cols=196 Identities=15% Similarity=0.048 Sum_probs=123.5
Q ss_pred ccCCCceEEEEEeCCCCEEEEEecC---CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEE-EEeCCC--cEEE
Q 038537 86 QQHRDCVSCMAFYHAEGLLYTGSFD---KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVF-TCSSDG--SVKI 159 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~~ 159 (358)
..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++...+. ...+...+..|+|+++.++ +.+.+| .|++
T Consensus 200 t~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~---~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 200 LRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA---SFRGINGAPSFSPDGRRLALTLSRDGNPEIYV 276 (433)
T ss_pred ecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec---cCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence 3566678999999999999887643 46999999887633332 2334455789999999775 445555 5889
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-CCc--EEEEEccCCcCCccccceeecccceeEEEeee
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-DGS--INFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI 236 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (358)
||+.++.. ..+..+.......+|+| +++.|+..+. +|. |+++|+..... ... ...+......+++|+
T Consensus 277 ~d~~~g~~-----~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~~iy~~dl~~g~~--~~l-t~~g~~~~~~~~SpD 346 (433)
T PRK04922 277 MDLGSRQL-----TRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRPQIYRVAASGGSA--ERL-TFQGNYNARASVSPD 346 (433)
T ss_pred EECCCCCe-----EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCe--EEe-ecCCCCccCEEECCC
Confidence 99865532 12223344456788988 8888877664 455 55556554221 111 112222334678999
Q ss_pred CCEEEEeeCCC---eEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC-Cc--EEEEEe
Q 038537 237 EKLIFSGSEDT---TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD-QT--FKVWRV 306 (358)
Q Consensus 237 ~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d-g~--v~iw~~ 306 (358)
++.|+..+.++ .|.+||+.+++. . .+. +........|+|+ |++|+..+.+ |. |.++++
T Consensus 347 G~~Ia~~~~~~~~~~I~v~d~~~g~~----~-~Lt-~~~~~~~p~~spd------G~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 347 GKKIAMVHGSGGQYRIAVMDLSTGSV----R-TLT-PGSLDESPSFAPN------GSMVLYATREGGRGVLAAVST 410 (433)
T ss_pred CCEEEEEECCCCceeEEEEECCCCCe----E-ECC-CCCCCCCceECCC------CCEEEEEEecCCceEEEEEEC
Confidence 99988765433 699999988742 2 222 2223456789999 7766655543 33 555554
No 225
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.61 E-value=2.8e-11 Score=102.00 Aligned_cols=280 Identities=15% Similarity=0.190 Sum_probs=171.5
Q ss_pred EEeeeCC----CcEEEEeC--CCceee--eeeee-cccceEEEEecCCEEEEEeC----CceEEEEecccc-cccccccc
Q 038537 2 VFTGSSS----TRIRVWRQ--PDCVER--GFIKA-RHGEVRAILAHDNMLFTTNK----DCKIRIWNFTVS-DNFRTKKV 67 (358)
Q Consensus 2 l~tg~~d----g~v~vw~~--~~~~~~--~~~~~-h~~~v~~i~~~~~~l~s~~~----dg~i~iw~~~~~-~~~~~~~~ 67 (358)
+++|+.. +.|.+|++ .+++.. ..... ....-.++..++++|+++.. +|.|..|++... ..+....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~- 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN- 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE-
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee-
Confidence 5677776 68999988 444432 22211 12222344557888888876 579999998865 2221111
Q ss_pred cccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec-CCeEEEEEccC-Cccccccccc-----------cccc
Q 038537 68 TTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF-DKTVKAWRVLD-KRCTCVDSFV-----------AHES 134 (358)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~~~~~-----------~~~~ 134 (358)
...........++++|++++|+++.. +|.|.++++.. +......... ....
T Consensus 81 ----------------~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~ 144 (345)
T PF10282_consen 81 ----------------SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGP 144 (345)
T ss_dssp ----------------EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSST
T ss_pred ----------------eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccc
Confidence 11113344567999999999988864 89999999986 3322221111 1234
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCcEEEEEceecCCcceeeeee-cccCCceeEEEEeecCCCcEEEEe-ecCCcEEEEEcc
Q 038537 135 NVNAIVVNQDDGFVFTCSS-DGSVKIWRRVYRENSHTLTMTL-KFQQSSVNALALSSFFDNYFLYSG-SSDGSINFWEKD 211 (358)
Q Consensus 135 ~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~ 211 (358)
...++.++|+++++++... ...|.+|++............. .........++|+| +++++++. ..++.|.+|++.
T Consensus 145 h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p--dg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 145 HPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP--DGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp CEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T--TSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC--CcCEEEEecCCCCcEEEEeec
Confidence 5789999999998887654 4579999986554222111111 23456778999998 87776555 457889999988
Q ss_pred CCcCCccccceee-------cc-cceeEEEeeeCCEEEEee-CCCeEEEEEcCC--CceeeeeeeeecCcccceEEEEee
Q 038537 212 KMSGGFNHGGFLQ-------GH-CFAVLCLVAIEKLIFSGS-EDTTIRVWRRAE--GGCYHECLAVLDGHRGPVRCLAAS 280 (358)
Q Consensus 212 ~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~--~~~~~~~~~~~~~h~~~v~~i~~~ 280 (358)
............. +. ...-+.++|++++|+++. ..+.|.+|++.. +.. +.+..+.......+.++++
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l--~~~~~~~~~G~~Pr~~~~s 300 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL--TLVQTVPTGGKFPRHFAFS 300 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE--EEEEEEEESSSSEEEEEE-
T ss_pred ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce--EEEEEEeCCCCCccEEEEe
Confidence 3222222211111 11 233467889999887765 667899999943 333 3444444334457899999
Q ss_pred cccceeeeCeEEEEcc-CCCcEEEEEeee
Q 038537 281 LEMEKVVMGFLVYSSS-LDQTFKVWRVKV 308 (358)
Q Consensus 281 ~~~~~~~~~~~l~s~~-~dg~v~iw~~~~ 308 (358)
|+ |++|+++. .++.|.+|++..
T Consensus 301 ~~------g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 301 PD------GRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp TT------SSEEEEEETTTTEEEEEEEET
T ss_pred CC------CCEEEEEecCCCeEEEEEEeC
Confidence 99 66766554 778999999874
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=3.2e-13 Score=117.44 Aligned_cols=232 Identities=13% Similarity=0.022 Sum_probs=145.1
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEE--ecCCEEEEEeC---CceEEEEecccccccccccccccCCCceeeeecCCC
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAIL--AHDNMLFTTNK---DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSN 83 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~--~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
..|.+||..... ...+..+...+.... ++++.|+..+. +..|.+||+.+++....
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l------------------- 243 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV------------------- 243 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-------------------
Confidence 468899986443 345555666676654 47888887764 34699999987653211
Q ss_pred ccccCCCceEEEEEeCCCCEEE-EEecCC--eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-CCc--E
Q 038537 84 TQQQHRDCVSCMAFYHAEGLLY-TGSFDK--TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DGS--V 157 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i 157 (358)
........+.+|+|+|+.|+ +.+.+| .|.+||+.+++ ...+..+.......+|+|+++.|+.++. +|. |
T Consensus 244 --~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~i 318 (433)
T PRK04922 244 --ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ---LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQI 318 (433)
T ss_pred --ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC---eEECccCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 12223345789999998775 445555 69999998876 2334445555677899999998887764 455 5
Q ss_pred EEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC---cEEEEEccCCcCCccccceeecccceeEEEe
Q 038537 158 KIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG---SINFWEKDKMSGGFNHGGFLQGHCFAVLCLV 234 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
.++|+.++.. ..+ ..........+|+| ++++++..+.++ .|.+||+.+.... .+ ..+....-..++
T Consensus 319 y~~dl~~g~~-~~l----t~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L---t~~~~~~~p~~s 387 (433)
T PRK04922 319 YRVAASGGSA-ERL----TFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL---TPGSLDESPSFA 387 (433)
T ss_pred EEEECCCCCe-EEe----ecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-EC---CCCCCCCCceEC
Confidence 5555543321 111 11233445688988 899888765443 5899998764321 11 111122234788
Q ss_pred eeCCEEEEeeCC---CeEEEEEcCCCceeeeeeeeecCcccceEEEEeec
Q 038537 235 AIEKLIFSGSED---TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASL 281 (358)
Q Consensus 235 ~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 281 (358)
++++.|+..+.+ +.|.++++... ....+..+.+.+...+|+|
T Consensus 388 pdG~~i~~~s~~~g~~~L~~~~~~g~-----~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 388 PNGSMVLYATREGGRGVLAAVSTDGR-----VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCCEEEEEEecCCceEEEEEECCCC-----ceEEcccCCCCCCCCccCC
Confidence 999987766643 45888888654 2344445566777778876
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=6.2e-13 Score=104.82 Aligned_cols=281 Identities=17% Similarity=0.227 Sum_probs=172.4
Q ss_pred eEEEEecCC--EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCC-CEEEEEe
Q 038537 32 VRAILAHDN--MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAE-GLLYTGS 108 (358)
Q Consensus 32 v~~i~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~ 108 (358)
+..++++.. .++++..|-.|++|+-...... ..+ ......|+|++|-|.+ ..|+.|+
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst~pt-~Lk-------------------s~sQrnvtclawRPlsaselavgC 160 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPT-KLK-------------------SVSQRNVTCLAWRPLSASELAVGC 160 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCCCCc-eec-------------------chhhcceeEEEeccCCcceeeeee
Confidence 445566543 5778889999999997752221 111 2234569999999955 4677777
Q ss_pred cCCeEEEEEccCCcc------------cccccccccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEceecCCcceeeeee
Q 038537 109 FDKTVKAWRVLDKRC------------TCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DGSVKIWRRVYRENSHTLTMTL 175 (358)
Q Consensus 109 ~dg~i~iwd~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~ 175 (358)
.. -|.+|.....-. ..+....+| .+|+++.|.+||..+++++. |..|.+||..++....-.
T Consensus 161 r~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~---- 234 (445)
T KOG2139|consen 161 RA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI---- 234 (445)
T ss_pred cc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc----
Confidence 65 499997643210 011112234 68999999999999998875 678999999776543322
Q ss_pred cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec-ccceeEEEeeeCCEEEEeeCCCeEEEEEc
Q 038537 176 KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG-HCFAVLCLVAIEKLIFSGSEDTTIRVWRR 254 (358)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 254 (358)
....+.+.-+.|+| ++.+|+++.-|+..++|..... ........+ ....-.+++|.|++|+.... |.-++|.+
T Consensus 235 ~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~---wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl 308 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQS---WTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSL 308 (445)
T ss_pred ccCCCceeeEEEcC--CCCEEEEecccceeeeehhccc---ceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEE
Confidence 23467888999999 9999999999999999965431 111111111 13334677888876654432 22344443
Q ss_pred CCCce-----------eeeeeeeec------C---cccceEEEEeecccceeeeCeEEEEccCCC--------cEEEEEe
Q 038537 255 AEGGC-----------YHECLAVLD------G---HRGPVRCLAASLEMEKVVMGFLVYSSSLDQ--------TFKVWRV 306 (358)
Q Consensus 255 ~~~~~-----------~~~~~~~~~------~---h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg--------~v~iw~~ 306 (358)
...+. ...++..+. + -.+++.+++|.|. |.+|++.-..+ .|.+||.
T Consensus 309 ~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDps------GeyLav~fKg~~~v~~~k~~i~~fdt 382 (445)
T KOG2139|consen 309 TFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPS------GEYLAVIFKGQSFVLLCKLHISRFDT 382 (445)
T ss_pred eecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCC------CCEEEEEEcCCchhhhhhhhhhhhcc
Confidence 32110 001111111 1 1467899999999 78888765544 3778888
Q ss_pred eeCCCCcceeecccccCCCCccceeeecccCCCcccccccchhhhh
Q 038537 307 KVMPDQEKTMCLDYSDYHSNSKTTTTKMDYEMSPVLSPSWVEKKMK 352 (358)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~W~~~~~~ 352 (358)
+..+..+-..|-. ..+..+... .-.+-+...+++++.|+-...+
T Consensus 383 r~sp~vels~cg~-i~ge~P~~I-sF~pl~n~g~lLsiaWsTGriq 426 (445)
T KOG2139|consen 383 RKSPPVELSYCGM-IGGEYPAYI-SFGPLKNEGRLLSIAWSTGRIQ 426 (445)
T ss_pred cccCceEEEeccc-ccCCCCceE-EeeecccCCcEEEEEeccCceE
Confidence 8766554443332 222222222 2222335668999999876544
No 228
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.59 E-value=2e-13 Score=121.11 Aligned_cols=257 Identities=17% Similarity=0.198 Sum_probs=180.0
Q ss_pred eCCCcEEEEeCCCceeeeee------eecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 6 SSSTRIRVWRQPDCVERGFI------KARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 6 ~~dg~v~vw~~~~~~~~~~~------~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
++.-.|.+||+..+..+..+ ..|... ..+...+.+++++..-+.+..=+......
T Consensus 23 g~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e-~~~~l~~~~~v~~~~~~~v~~~~~~~~~~------------------ 83 (967)
T KOG0974|consen 23 GSGPEILVYDLSSGCLIRHLIQSKILEVHRGE-GKVKLLSGKIVTCAKSDEVYVKEASNQII------------------ 83 (967)
T ss_pred cCCCceEEeeCCchhHhhhhhhhccccccccc-ccceeccceEEEEEeecceeecchhhhhh------------------
Confidence 34456999998877655433 234000 01112345666666544444322221111
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccC-----eEEEEEcCCCCEEEEEeCC
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESN-----VNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d 154 (358)
..-.+.|....+..+...++.++.+..+.+||..... ...... +... ..-+-++++.-++++|+.-
T Consensus 84 ------~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~--~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 84 ------ERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSS--VLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred ------hhccccccccchhhhcceEEEEEcCceEEEEecccCc--eehhcC-CCceEEEEeEEEEeccCcEEEEEecccc
Confidence 1223344445556677889999999999999998765 333333 2222 1223345667789999999
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV 234 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
+.|.+|+..... ....+.+|.+.|..+.++. ++.++++.+.|.++++|++.+.+... ...-+|+.++..+.
T Consensus 155 ~~iivW~~~~dn----~p~~l~GHeG~iF~i~~s~--dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 155 GEIIVWKPHEDN----KPIRLKGHEGSIFSIVTSL--DGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACC 225 (967)
T ss_pred ccEEEEeccccC----CcceecccCCceEEEEEcc--CCcEEEEEecCcceeeeecccccccC---cccccccceeEEEE
Confidence 999999986222 1225788999999999998 99999999999999999999854333 34668999998877
Q ss_pred eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCccc-ceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 235 AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRG-PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 235 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~-~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
..++.++++++|-+.++|+.... .+.++.+|.. .|..++..+. ...++|++.||.+++|++....
T Consensus 226 ~~~n~i~t~gedctcrvW~~~~~-----~l~~y~~h~g~~iw~~~~~~~------~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 226 FLPNRIITVGEDCTCRVWGVNGT-----QLEVYDEHSGKGIWKIAVPIG------VIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred eccceeEEeccceEEEEEecccc-----eehhhhhhhhcceeEEEEcCC------ceEEEeeccCcchhhhhhhccc
Confidence 77779999999999999977664 3457778854 6899999998 6799999999999999987643
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.59 E-value=4.8e-12 Score=98.20 Aligned_cols=225 Identities=9% Similarity=0.111 Sum_probs=142.7
Q ss_pred EeeeCCCcEEEEeCCCceeeeeeeecc--cceEEEEecCCEEEEE-eCC------ceEEEEecccccccccccccccCCC
Q 038537 3 FTGSSSTRIRVWRQPDCVERGFIKARH--GEVRAILAHDNMLFTT-NKD------CKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 3 ~tg~~dg~v~vw~~~~~~~~~~~~~h~--~~v~~i~~~~~~l~s~-~~d------g~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
++|..+| .|||+.+-.+......-+. -.+.-+.+..++|+-. |.+ ..+.|||=....++..
T Consensus 21 ava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~e--------- 90 (346)
T KOG2111|consen 21 AVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIE--------- 90 (346)
T ss_pred EEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEE---------
Confidence 4455555 8999986544332222222 2333445556665543 332 4699999333333221
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccccc--ccCeEEEEEcCCCCEEEE-
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAH--ESNVNAIVVNQDDGFVFT- 150 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~- 150 (358)
..-..+|.++.+.++ .|++.- .+.|.+|...+.- +.++.+... ...+.+++-..+..+|+.
T Consensus 91 ------------l~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~-k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 91 ------------LSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNP-KLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ------------EEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCCh-hheeeeecccCCCceEeecCCCCceEEEcC
Confidence 234567999999764 455544 5789999987432 133333321 223333333333334443
Q ss_pred EeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCc-EEEEEccCCcCCccccceeecccce
Q 038537 151 CSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGS-INFWEKDKMSGGFNHGGFLQGHCFA 229 (358)
Q Consensus 151 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~ 229 (358)
|-.-|.|.+-|+...... ......+|.+.|.|++.+. +|.++|+++..|+ |+|||..++....+..+-.......
T Consensus 155 g~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~--~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNL--QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred CCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcC--CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 334699999999755432 2356678999999999998 9999999999997 7899999866555443333333334
Q ss_pred eEEEeeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 230 VLCLVAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 230 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
..+++|+..+|++++..|+|.||.++..
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 4667788999999999999999988764
No 230
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.59 E-value=2.9e-13 Score=105.89 Aligned_cols=280 Identities=18% Similarity=0.211 Sum_probs=171.1
Q ss_pred EEeeeCCCcEEEEeC-CCceeeeeee-ecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 2 VFTGSSSTRIRVWRQ-PDCVERGFIK-ARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 2 l~tg~~dg~v~vw~~-~~~~~~~~~~-~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
+++.+.|.++|||-- ..++....+. .-..+++++++. ...|+.|-..|++.-+.+...-....
T Consensus 39 v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~------------- 105 (404)
T KOG1409|consen 39 VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMT------------- 105 (404)
T ss_pred eEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcc-------------
Confidence 678899999999954 3344333322 224567777764 45788888899998887653211000
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEec---------------------------------------CCeEEEEEc
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF---------------------------------------DKTVKAWRV 118 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---------------------------------------dg~i~iwd~ 118 (358)
..+....|..++..+-|+.....+++.+. .|.|.+..+
T Consensus 106 ---~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~ 182 (404)
T KOG1409|consen 106 ---FLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKL 182 (404)
T ss_pred ---hhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEE
Confidence 00122344444544444443333443333 344444444
Q ss_pred cCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEE
Q 038537 119 LDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYS 198 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 198 (358)
.......+..+.+|.+.+.+++|.+....+++|..|..+.+||+--.. .....+.+|...|..+...+ --..+.+
T Consensus 183 ~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~---g~~~el~gh~~kV~~l~~~~--~t~~l~S 257 (404)
T KOG1409|consen 183 EQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK---GTAYELQGHNDKVQALSYAQ--HTRQLIS 257 (404)
T ss_pred eecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc---ceeeeeccchhhhhhhhhhh--hheeeee
Confidence 444445677788999999999999999999999999999999985332 34456678899999998887 7789999
Q ss_pred eecCCcEEEEEccCCcCCc---cc-----------------------cceeecc---cceeEEEee--eCCEEEEeeCCC
Q 038537 199 GSSDGSINFWEKDKMSGGF---NH-----------------------GGFLQGH---CFAVLCLVA--IEKLIFSGSEDT 247 (358)
Q Consensus 199 ~~~dg~i~i~d~~~~~~~~---~~-----------------------~~~~~~~---~~~~~~~~~--~~~~l~~~~~dg 247 (358)
++.||.|.+|+++...... .. ......| .+...|... +.....+-+..-
T Consensus 258 ~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~ 337 (404)
T KOG1409|consen 258 CGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEF 337 (404)
T ss_pred ccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccccee
Confidence 9999999999987631100 00 0000000 011111111 111222222333
Q ss_pred eEEEEEcCCCce---eeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 248 TIRVWRRAEGGC---YHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 248 ~i~iwd~~~~~~---~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.+|+-|.-.... .+.++.....-...|+.|.+..+ -.+|+|+|.|..|+|||++.
T Consensus 338 ~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqet------lglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 338 SVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQET------LGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EEEEecccchhhhcCCCCccccccccccceeEEEhhhh------ccceeecCCceEEEEEechh
Confidence 455554332211 01234444333457999999888 66999999999999999985
No 231
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=8.8e-13 Score=114.36 Aligned_cols=235 Identities=11% Similarity=0.020 Sum_probs=143.8
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEE--ecCCEEEEEeCC---ceEEEEecccccccccccccccCCCceeeeecCCC
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAIL--AHDNMLFTTNKD---CKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSN 83 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~--~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
..|.++|.. +.....+..+...+.+.. ++++.|+..+.+ ..|.+||+.+++....
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l------------------- 235 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV------------------- 235 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-------------------
Confidence 457777764 444444556666776554 478888776642 4599999987754221
Q ss_pred ccccCCCceEEEEEeCCCCEEE-EEecCCeEEEEEcc--CCcccccccccccccCeEEEEEcCCCCEEEEEeC-CCcEEE
Q 038537 84 TQQQHRDCVSCMAFYHAEGLLY-TGSFDKTVKAWRVL--DKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DGSVKI 159 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~ 159 (358)
....+.+.+.+|+|+|+.|+ +.+.+|...+|.++ .+. ...+..+........|+|||+.|+..+. +|...+
T Consensus 236 --~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~I 310 (427)
T PRK02889 236 --ANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQI 310 (427)
T ss_pred --ecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC---cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEE
Confidence 11223456789999998876 56777776666553 333 3344445555677889999998876654 567777
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC---cEEEEEccCCcCCccccceeecccceeEEEeee
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG---SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI 236 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (358)
|.+.......... .. .........|+| ++++|+..+.++ .|.+||+..+... .. ..........++|+
T Consensus 311 y~~~~~~g~~~~l-t~--~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~l---t~~~~~~~p~~spd 381 (427)
T PRK02889 311 YRMPASGGAAQRV-TF--TGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVT-AL---TDTTRDESPSFAPN 381 (427)
T ss_pred EEEECCCCceEEE-ec--CCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeE-Ec---cCCCCccCceECCC
Confidence 7664322111111 11 223344578888 999998777654 5999998764321 11 11122234578999
Q ss_pred CCEEEEeeCCC---eEEEEEcCCCceeeeeeeeecCcccceEEEEeecc
Q 038537 237 EKLIFSGSEDT---TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 237 ~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
++.|+.++.++ .+++.+.. + .....+..+.+.+...+|+|-
T Consensus 382 g~~l~~~~~~~g~~~l~~~~~~-g----~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 382 GRYILYATQQGGRSVLAAVSSD-G----RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCEEEEEEecCCCEEEEEEECC-C----CceEEeecCCCCCCCCccCCC
Confidence 99888766443 35565664 3 233444456677788888874
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.5e-12 Score=112.83 Aligned_cols=200 Identities=15% Similarity=0.066 Sum_probs=124.3
Q ss_pred ccCCCceEEEEEeCCCCEEEEEecC---CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEE-EEeCCCcEEEEE
Q 038537 86 QQHRDCVSCMAFYHAEGLLYTGSFD---KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVF-TCSSDGSVKIWR 161 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd 161 (358)
..+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++...+. ...+.+....|+||++.|+ +.+.+|...+|.
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA---NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee---cCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 3456678899999999998877643 46999999888632332 2334566889999999876 467788877776
Q ss_pred ceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-CCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEE
Q 038537 162 RVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLI 240 (358)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (358)
+...... ...+..+........|+| +++.|+..+. +|...+|.+.......... ...+.......++|+|++|
T Consensus 269 ~d~~~~~---~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l-t~~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 269 VNADGSG---LRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRV-TFTGSYNTSPRISPDGKLL 342 (427)
T ss_pred EECCCCC---cEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEE-ecCCCCcCceEECCCCCEE
Confidence 5432211 122222344556778998 8988776554 4666777654321111111 1122222235789999999
Q ss_pred EEeeCCC---eEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC-CcEEEEEe
Q 038537 241 FSGSEDT---TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD-QTFKVWRV 306 (358)
Q Consensus 241 ~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d-g~v~iw~~ 306 (358)
+..+.++ .|++||+.+++. + .+..+ .......|+|+ ++.|+.++.+ |.-.++-+
T Consensus 343 a~~s~~~g~~~I~v~d~~~g~~--~---~lt~~-~~~~~p~~spd------g~~l~~~~~~~g~~~l~~~ 400 (427)
T PRK02889 343 AYISRVGGAFKLYVQDLATGQV--T---ALTDT-TRDESPSFAPN------GRYILYATQQGGRSVLAAV 400 (427)
T ss_pred EEEEccCCcEEEEEEECCCCCe--E---EccCC-CCccCceECCC------CCEEEEEEecCCCEEEEEE
Confidence 8776554 699999988742 1 22222 23467899999 6666666544 44334433
No 233
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.57 E-value=4.1e-12 Score=99.11 Aligned_cols=271 Identities=11% Similarity=0.122 Sum_probs=162.3
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCC-EEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDN-MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
|.....|+.|.+|++...+--..+....+++.++++ +|+ .|.+...+-.|.+|.+.+.+......... ......
T Consensus 64 lC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~---~~kg~~ 140 (447)
T KOG4497|consen 64 LCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKT---NVKGYA 140 (447)
T ss_pred eeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccccc---CceeEE
Confidence 567788999999999998888888888888888866 564 56667779999999998876542211100 000011
Q ss_pred ecCC---------------------------CccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccc
Q 038537 79 FSKS---------------------------NTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA 131 (358)
Q Consensus 79 ~~~~---------------------------~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 131 (358)
+.+. ..+.-.+-..+.+.|+|||..|+ +||.--.- .+.. ..
T Consensus 141 f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---------Vwd~~Ley--kv~a-Ye 208 (447)
T KOG4497|consen 141 FHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---------VWDNVLEY--KVYA-YE 208 (447)
T ss_pred ECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE---------Eecchhhh--eeee-ee
Confidence 1111 01111122334455555554333 44421111 1111 12
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcc------------------------------------------
Q 038537 132 HESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSH------------------------------------------ 169 (358)
Q Consensus 132 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~------------------------------------------ 169 (358)
-.-.+..+.|+|.++++++|+.|+.+|+.+--+-+...
T Consensus 209 ~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~ 288 (447)
T KOG4497|consen 209 RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHI 288 (447)
T ss_pred eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCc
Confidence 23468889999999999999999999886521100000
Q ss_pred --------e------------eeeeecccCCceeEEEEeecCCCcEEEEeec--CCcEEEEEccCCcCCccccceeeccc
Q 038537 170 --------T------------LTMTLKFQQSSVNALALSSFFDNYFLYSGSS--DGSINFWEKDKMSGGFNHGGFLQGHC 227 (358)
Q Consensus 170 --------~------------~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~ 227 (358)
+ ...........+--++|++ |..++++-.. -..+-+||++..+....+ .+.|.
T Consensus 289 ~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~--Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL---iQk~p 363 (447)
T KOG4497|consen 289 WEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC--DSTYAATRNDKYPNALWLWDLQNLKLHAVL---IQKHP 363 (447)
T ss_pred cccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC--CceEEeeecCCCCceEEEEechhhhhhhhh---hhccc
Confidence 0 0000111233567788887 7777776543 356889999983322222 23344
Q ss_pred ceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 228 FAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
.....++|....|+.+.....+++|..... ..+... +..-.|..+.|..+ |..++-.+.|....-
T Consensus 364 iraf~WdP~~prL~vctg~srLY~W~psg~----~~V~vP-~~GF~i~~l~W~~~------g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 364 IRAFEWDPGRPRLVVCTGKSRLYFWAPSGP----RVVGVP-KKGFNIQKLQWLQP------GEFIVLCGKDAFCVA 428 (447)
T ss_pred eeEEEeCCCCceEEEEcCCceEEEEcCCCc----eEEecC-CCCceeeeEEecCC------CcEEEEEcCCceEEE
Confidence 444444555567777777778999988765 333332 22357999999998 889999999965443
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=3.9e-13 Score=102.78 Aligned_cols=151 Identities=13% Similarity=0.184 Sum_probs=103.9
Q ss_pred EEEEEeCCCCEEEEEec----------CCeEEEEEccCCccccccccc-ccccCeEEEEEcCCCCEEEEE--eCCCcEEE
Q 038537 93 SCMAFYHAEGLLYTGSF----------DKTVKAWRVLDKRCTCVDSFV-AHESNVNAIVVNQDDGFVFTC--SSDGSVKI 159 (358)
Q Consensus 93 ~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~--~~dg~i~~ 159 (358)
..+.|+|+|..|+.-.. -+...+|.++.... ....+. ...++|.+++|+|+++.|++. ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 45788999987665333 23456666644331 233332 234579999999999987655 35679999
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec---CCcEEEEEccCCcCCccccceeecccceeEEEeee
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS---DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI 236 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (358)
||++ ..... ..+...+..+.|+| +|+++++++. .|.|.+||.++.+. ............+++|+
T Consensus 88 yd~~-----~~~i~--~~~~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~----i~~~~~~~~t~~~WsPd 154 (194)
T PF08662_consen 88 YDVK-----GKKIF--SFGTQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKK----ISTFEHSDATDVEWSPD 154 (194)
T ss_pred EcCc-----ccEeE--eecCCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEE----eeccccCcEEEEEEcCC
Confidence 9984 11122 22456788999999 9999999875 46799999996332 22233344566788999
Q ss_pred CCEEEEeeC------CCeEEEEEcCCC
Q 038537 237 EKLIFSGSE------DTTIRVWRRAEG 257 (358)
Q Consensus 237 ~~~l~~~~~------dg~i~iwd~~~~ 257 (358)
|++|+++.. |..++||+....
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEecCe
Confidence 999999874 678999998653
No 235
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.56 E-value=8.2e-13 Score=103.43 Aligned_cols=252 Identities=20% Similarity=0.336 Sum_probs=183.4
Q ss_pred eeeeeeeecccceEEEE--ecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEE
Q 038537 20 VERGFIKARHGEVRAIL--AHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAF 97 (358)
Q Consensus 20 ~~~~~~~~h~~~v~~i~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 97 (358)
.....+.||...+++.. +..+-+++.+.|.+++||--......... .......+++++.+
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps------------------I~~~mP~~~~~~~y 76 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS------------------IYHYMPSPCSAMEY 76 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch------------------hhhhCCCCceEeee
Confidence 34566788888887653 34667999999999999964433222211 11345677999999
Q ss_pred eCCCCEEEEEecCCeEEEEEccC--CcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeee
Q 038537 98 YHAEGLLYTGSFDKTVKAWRVLD--KRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTL 175 (358)
Q Consensus 98 ~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 175 (358)
.++...|+.|-..|++.-+.+.. .+....+....|...+..+-|+.....+++.+.|..+.---.+.+........
T Consensus 77 ~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-- 154 (404)
T KOG1409|consen 77 VSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-- 154 (404)
T ss_pred eccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe--
Confidence 99999999999999999887653 23335666778999999999999889999999998775443333332222221
Q ss_pred cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeee--CCEEEEeeCCCeEEEEE
Q 038537 176 KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI--EKLIFSGSEDTTIRVWR 253 (358)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd 253 (358)
....+++.+.- .+...|...|.|.+-.+.. ........+.+|...+.++.++ ..++.+|..|..+.+||
T Consensus 155 ---~~~~t~~~~d~----~~~fvGd~~gqvt~lr~~~--~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wd 225 (404)
T KOG1409|consen 155 ---ETPASALQFDA----LYAFVGDHSGQITMLKLEQ--NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWD 225 (404)
T ss_pred ---eccCCCCceee----EEEEecccccceEEEEEee--cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEe
Confidence 11222233322 1556666777777766554 2345555688999999888876 47999999999999999
Q ss_pred cCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 254 RAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
+.... ....++.+|...|..++..+. -+.|++++.||.|.+|+++..
T Consensus 226 igg~~---g~~~el~gh~~kV~~l~~~~~------t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 226 IGGRK---GTAYELQGHNDKVQALSYAQH------TRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ccCCc---ceeeeeccchhhhhhhhhhhh------heeeeeccCCCeEEEEeccce
Confidence 98764 456788899999999998887 789999999999999999864
No 236
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=3.9e-12 Score=110.83 Aligned_cols=232 Identities=8% Similarity=-0.029 Sum_probs=146.2
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeC---CceEEEEecccccccccccccccCCCceeeeecCCC
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNK---DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSN 83 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
..|.++|.... ....+..|...+....+ +++.|+..+. +..|.+||+.+++...
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-------------------- 240 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-------------------- 240 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------
Confidence 37888887544 44556677777876654 7788777653 4689999998765421
Q ss_pred ccccCCCceEEEEEeCCCCEEE-EEecCCe--EEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-CC--cE
Q 038537 84 TQQQHRDCVSCMAFYHAEGLLY-TGSFDKT--VKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DG--SV 157 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i 157 (358)
+..+.+.+...+|+|+|+.|+ +.+.++. |.+||+.+++ ...+..+........|+||++.|+..+. +| .|
T Consensus 241 -l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~I 316 (435)
T PRK05137 241 -VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQL 316 (435)
T ss_pred -eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeE
Confidence 123445567889999998775 5555554 7777887776 3344445556678899999998887764 33 57
Q ss_pred EEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC---CcEEEEEccCCcCCccccceeecccceeEEEe
Q 038537 158 KIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD---GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV 234 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
+++|+..+.. .. +......+....|+| +++.|+..+.+ ..|.+||+..... ... ..+.......++
T Consensus 317 y~~d~~g~~~-~~----lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~--~~l--t~~~~~~~p~~s 385 (435)
T PRK05137 317 YVMNADGSNP-RR----ISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGE--RIL--TSGFLVEGPTWA 385 (435)
T ss_pred EEEECCCCCe-EE----eecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCce--Eec--cCCCCCCCCeEC
Confidence 7777644321 11 112244566778988 89988876653 3578888754221 111 112223345788
Q ss_pred eeCCEEEEeeCC------CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecc
Q 038537 235 AIEKLIFSGSED------TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 235 ~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
|+++.|+..+.+ ..++++|+..+.. ..+. ..+.+...+|+|-
T Consensus 386 pDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-----~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 386 PNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-----REVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCCCEEEEEEccCCCCCcceEEEEECCCCce-----EEcc-CCCCccCcccCCC
Confidence 999888765432 3588888876532 2222 2344666778764
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.9e-12 Score=111.70 Aligned_cols=187 Identities=13% Similarity=0.018 Sum_probs=120.6
Q ss_pred ccCCCceEEEEEeCCCCEEEEEec---CCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEE-EEeCCCc--EEE
Q 038537 86 QQHRDCVSCMAFYHAEGLLYTGSF---DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVF-TCSSDGS--VKI 159 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~~ 159 (358)
..|...+.+.+|+|+|+.|+..+. +..|.+||+.+++. ..+..+.+.+....|+|+|+.|+ +.+.++. |.+
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 274 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYT 274 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEE
Confidence 457778999999999998888764 46899999988763 23334556677889999998775 5555655 666
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-CC--cEEEEEccCCcCCccccceeecccceeEEEeee
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-DG--SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI 236 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (358)
||+.++.. ..+..+........|+| +++.|+..+. +| .|+++|+..... .... ..........++|+
T Consensus 275 ~d~~~~~~-----~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~~Iy~~d~~g~~~--~~lt-~~~~~~~~~~~Spd 344 (435)
T PRK05137 275 MDLRSGTT-----TRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSPQLYVMNADGSNP--RRIS-FGGGRYSTPVWSPR 344 (435)
T ss_pred EECCCCce-----EEccCCCCccCceeEcC--CCCEEEEEECCCCCCeEEEEECCCCCe--EEee-cCCCcccCeEECCC
Confidence 77755432 22233445566788998 8888887664 33 577778765221 1111 11111223568899
Q ss_pred CCEEEEeeCC---CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccC
Q 038537 237 EKLIFSGSED---TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSL 297 (358)
Q Consensus 237 ~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~ 297 (358)
++.|+....+ ..|.+||+.++.. ..+. ....+....|+|+ |+.|+..+.
T Consensus 345 G~~ia~~~~~~~~~~i~~~d~~~~~~-----~~lt-~~~~~~~p~~spD------G~~i~~~~~ 396 (435)
T PRK05137 345 GDLIAFTKQGGGQFSIGVMKPDGSGE-----RILT-SGFLVEGPTWAPN------GRVIMFFRQ 396 (435)
T ss_pred CCEEEEEEcCCCceEEEEEECCCCce-----Eecc-CCCCCCCCeECCC------CCEEEEEEc
Confidence 9998876543 3688889866531 1221 1234678899999 666655443
No 238
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=1.2e-12 Score=102.54 Aligned_cols=250 Identities=11% Similarity=0.160 Sum_probs=155.5
Q ss_pred CEEeeeCCCcEEEEeCCCce-----eeeeeeeccc------------ceEEEEe----cCCEEEEEeCCceEEEEecccc
Q 038537 1 MVFTGSSSTRIRVWRQPDCV-----ERGFIKARHG------------EVRAILA----HDNMLFTTNKDCKIRIWNFTVS 59 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~-----~~~~~~~h~~------------~v~~i~~----~~~~l~s~~~dg~i~iw~~~~~ 59 (358)
+||||..+|.|.++.-.... ....++.|.. .|..+.+ +...++..+.|.+|++|.+...
T Consensus 39 ~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er 118 (433)
T KOG1354|consen 39 RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRER 118 (433)
T ss_pred eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeecc
Confidence 58999999999999754322 2334445543 4566665 3457888889999999998754
Q ss_pred ccccc---------------ccccccCCCceeeeecCCC-ccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcc
Q 038537 60 DNFRT---------------KKVTTLPRRSSFLSFSKSN-TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRC 123 (358)
Q Consensus 60 ~~~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 123 (358)
..... .++.........+...+.+ --.+|..-|.+++++.|+..++++ .|=.|.+|+++-...
T Consensus 119 ~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~ 197 (433)
T KOG1354|consen 119 GSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQ 197 (433)
T ss_pred ccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccCC
Confidence 33220 0000000111111122222 234788899999999999888875 457799998863221
Q ss_pred -ccccccc-----ccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceeee------------eecccCCceeE
Q 038537 124 -TCVDSFV-----AHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLTM------------TLKFQQSSVNA 184 (358)
Q Consensus 124 -~~~~~~~-----~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~------------~~~~~~~~i~~ 184 (358)
-.+..++ ..+.-|++..|+| ..+.++-.+..|+|++.|++.......... -+..--..|..
T Consensus 198 sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISD 277 (433)
T KOG1354|consen 198 SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISD 277 (433)
T ss_pred ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhc
Confidence 0111122 2345688999999 567888889999999999984321111000 01122357889
Q ss_pred EEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccc------------cee-----EEEeeeCCEEEEeeCCC
Q 038537 185 LALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC------------FAV-----LCLVAIEKLIFSGSEDT 247 (358)
Q Consensus 185 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~------------~~~-----~~~~~~~~~l~~~~~dg 247 (358)
+.|+. +|+++++-+. -+|++||+.....+... .+-|. ..+ ++++-++.++++|+...
T Consensus 278 vKFs~--sGryilsRDy-ltvk~wD~nme~~pv~t---~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n 351 (433)
T KOG1354|consen 278 VKFSH--SGRYILSRDY-LTVKLWDLNMEAKPVET---YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNN 351 (433)
T ss_pred eEEcc--CCcEEEEecc-ceeEEEeccccCCcceE---EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccc
Confidence 99998 8899988654 58999999764433222 22111 111 34444556999999999
Q ss_pred eEEEEEcCCC
Q 038537 248 TIRVWRRAEG 257 (358)
Q Consensus 248 ~i~iwd~~~~ 257 (358)
.+++|+...+
T Consensus 352 ~frvf~~~~g 361 (433)
T KOG1354|consen 352 VFRVFNLARG 361 (433)
T ss_pred eEEEecCCCC
Confidence 9999996554
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.52 E-value=2.2e-12 Score=98.68 Aligned_cols=150 Identities=9% Similarity=0.175 Sum_probs=103.2
Q ss_pred EEEEEcCCCCEEEEEeC----------CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEe--ecCCc
Q 038537 137 NAIVVNQDDGFVFTCSS----------DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSG--SSDGS 204 (358)
Q Consensus 137 ~~~~~~~~~~~l~~~~~----------dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~--~~dg~ 204 (358)
..+.|+|+|++|++-.. -|...+|.++........ ..+. ..++|.+++|+| +++.|++. ..++.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~-i~l~-~~~~I~~~~WsP--~g~~favi~g~~~~~ 84 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVES-IELK-KEGPIHDVAWSP--NGNEFAVIYGSMPAK 84 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccce-eecc-CCCceEEEEECc--CCCEEEEEEccCCcc
Confidence 46789999987765543 234566666443322111 1111 245699999999 88776554 45789
Q ss_pred EEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeC---CCeEEEEEcCCCceeeeeeeeecCcccceEEEEeec
Q 038537 205 INFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSE---DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASL 281 (358)
Q Consensus 205 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 281 (358)
|.+||++. .....+.........++|+|++|++++. .|.|.+||.++. +.+.... | ..++.++|+|
T Consensus 85 v~lyd~~~-----~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~----~~i~~~~-~-~~~t~~~WsP 153 (194)
T PF08662_consen 85 VTLYDVKG-----KKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK----KKISTFE-H-SDATDVEWSP 153 (194)
T ss_pred cEEEcCcc-----cEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC----EEeeccc-c-CcEEEEEEcC
Confidence 99999973 2222333444556788999999999874 467999999976 4455442 3 3578999999
Q ss_pred ccceeeeCeEEEEccC------CCcEEEEEee
Q 038537 282 EMEKVVMGFLVYSSSL------DQTFKVWRVK 307 (358)
Q Consensus 282 ~~~~~~~~~~l~s~~~------dg~v~iw~~~ 307 (358)
+ |++|+++.. |..++||+..
T Consensus 154 d------Gr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 154 D------GRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred C------CCEEEEEEeccceeccccEEEEEec
Confidence 9 889988874 7889999986
No 240
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.4e-12 Score=111.85 Aligned_cols=289 Identities=11% Similarity=0.028 Sum_probs=193.8
Q ss_pred cceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEE
Q 038537 30 GEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTG 107 (358)
Q Consensus 30 ~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 107 (358)
....++.|+ .++++.|+.||.+++-.+.+...-..... ......++...++.||...|.-+.|+.+.+.|-+.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS 89 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS 89 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-----cccccccchhhhhccCcceEEEEEecccccccccc
Confidence 455678885 67999999999999999886543221111 11223445567889999999999999999999999
Q ss_pred ecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEE
Q 038537 108 SFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187 (358)
Q Consensus 108 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~ 187 (358)
..+|.|.+|-+-.+.+-....-....+.|.+++|+.+|..+....+||.|.+=.+..... .-..++ ......+.|
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI---wgKeLk--g~~l~hv~w 164 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI---WGKELK--GQLLAHVLW 164 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee---cchhcc--hheccceee
Confidence 999999999998888644444445677899999999999999999999998866543221 111111 233457888
Q ss_pred eecCCCcEEEEeecCCcEEEEEccCCcCCccccc-------eee--ccc--------ceeEEEeeeCCEEEEeeCCCeEE
Q 038537 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGG-------FLQ--GHC--------FAVLCLVAIEKLIFSGSEDTTIR 250 (358)
Q Consensus 188 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~~--~~~--------~~~~~~~~~~~~l~~~~~dg~i~ 250 (358)
++ |...++.+-.+|.+.+||....-...-... .+. +|. .+..-..|+...|+.+-.+|.+.
T Consensus 165 s~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 165 SE--DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred cc--cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 88 888888898999999999765211100000 001 111 11122235668999999999998
Q ss_pred EEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCCccce
Q 038537 251 VWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNSKTT 330 (358)
Q Consensus 251 iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (358)
+-.-.+.. +++..-. .-.|.+..|+++ |..|+.+|.|..-. .+......++...-+|.
T Consensus 243 iMR~eND~---~Pvv~dt--gm~~vgakWnh~------G~vLAvcG~~~da~------~~~d~n~v~Fysp~G~i----- 300 (1189)
T KOG2041|consen 243 IMRSENDP---EPVVVDT--GMKIVGAKWNHN------GAVLAVCGNDSDAD------EPTDSNKVHFYSPYGHI----- 300 (1189)
T ss_pred hhhhcCCC---CCeEEec--ccEeecceecCC------CcEEEEccCccccc------CccccceEEEeccchhh-----
Confidence 87655542 3333322 367899999999 88999999874211 11222344444444443
Q ss_pred eeecccCCCcccccccchhhhh
Q 038537 331 TTKMDYEMSPVLSPSWVEKKMK 352 (358)
Q Consensus 331 ~~~~~~~~~~v~s~~W~~~~~~ 352 (358)
...+.-+.+-+.+.+|.+...+
T Consensus 301 ~gtlkvpg~~It~lsWEg~gLr 322 (1189)
T KOG2041|consen 301 VGTLKVPGSCITGLSWEGTGLR 322 (1189)
T ss_pred eEEEecCCceeeeeEEcCCceE
Confidence 3345556667888899877654
No 241
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=5.3e-13 Score=118.56 Aligned_cols=181 Identities=11% Similarity=0.157 Sum_probs=139.8
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccce------EEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCce
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEV------RAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v------~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
++.++.+..+-+||...+.....+....... ...+.+.-++++|+.-+.|.+|+.......
T Consensus 102 i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p------------- 168 (967)
T KOG0974|consen 102 IALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP------------- 168 (967)
T ss_pred EEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc-------------
Confidence 6778888899999987766555444322211 112334558999999999999998722211
Q ss_pred eeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG 155 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 155 (358)
..+.+|.+.|..+.++.+|+++++.|+|.++++|++++.+... ....+|+..|..++|.|+ .++++++|.
T Consensus 169 -------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-~~~fgHsaRvw~~~~~~n--~i~t~gedc 238 (967)
T KOG0974|consen 169 -------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-CTGFGHSARVWACCFLPN--RIITVGEDC 238 (967)
T ss_pred -------ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-cccccccceeEEEEeccc--eeEEeccce
Confidence 1247999999999999999999999999999999999987322 356689999999999988 899999999
Q ss_pred cEEEEEceecCCcceeeeeeccc-CCceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 156 SVKIWRRVYRENSHTLTMTLKFQ-QSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 156 ~i~~wd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
+.++|+.. ..++. .+..| ...+..++..+ +....++++.|+.+++|++..
T Consensus 239 tcrvW~~~----~~~l~-~y~~h~g~~iw~~~~~~--~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 239 TCRVWGVN----GTQLE-VYDEHSGKGIWKIAVPI--GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEEecc----cceeh-hhhhhhhcceeEEEEcC--CceEEEeeccCcchhhhhhhc
Confidence 99999652 22232 34444 46789999987 888999999999999999765
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.50 E-value=4.3e-12 Score=99.56 Aligned_cols=265 Identities=14% Similarity=0.163 Sum_probs=165.9
Q ss_pred ccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCC--EE
Q 038537 29 HGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEG--LL 104 (358)
Q Consensus 29 ~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l 104 (358)
..-|.++.+ .|++|++|..+|.|.++.-.....- .......-+.. -..+..... -.-...|..+.|.++++ .+
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqsh-epEFDYLkS-leieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSH-EPEFDYLKS-LEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeecc-Ccccchhhh-hhhhhhhhhceecCCCCccEE
Confidence 345667777 5899999999999999975543220 10000000000 000000001 12245688899988654 67
Q ss_pred EEEecCCeEEEEEccCCcccc------------------c---------------cc-ccccccCeEEEEEcCCCCEEEE
Q 038537 105 YTGSFDKTVKAWRVLDKRCTC------------------V---------------DS-FVAHESNVNAIVVNQDDGFVFT 150 (358)
Q Consensus 105 ~~~~~dg~i~iwd~~~~~~~~------------------~---------------~~-~~~~~~~v~~~~~~~~~~~l~~ 150 (358)
+..+.|.+|++|.+....... + +. -..|.-.|.+|.++.|...+++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 777899999999886433111 0 00 1357778999999999988887
Q ss_pred EeCCCcEEEEEceecCCcceeeee----ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccce----
Q 038537 151 CSSDGSVKIWRRVYRENSHTLTMT----LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF---- 222 (358)
Q Consensus 151 ~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---- 222 (358)
+ .|-.|.+|++.-......+.-. +.....-|++..|+| ...+.++-.+..|+|++-|++.....-.....
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp-~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHP-HHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCH-hHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 6 5778999998654443333211 122234688889998 35678888889999999999952211111100
Q ss_pred --------eeccccee--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCccc------------c---eEEE
Q 038537 223 --------LQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRG------------P---VRCL 277 (358)
Q Consensus 223 --------~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~------------~---v~~i 277 (358)
+..-...| ..|+.+|+++++-+. -+|++||+.... +++.+++-|.. . -..+
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~---~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec 335 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEA---KPVETYPVHEYLRSKLCSLYENDAIFDKFEC 335 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccC---CcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence 11111112 456678999998754 579999996543 55666665532 1 2456
Q ss_pred EeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 278 AASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 278 ~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+|+-+ +.+++|||....++++++..
T Consensus 336 ~~sg~------~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 336 SWSGN------DSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred EEcCC------cceEecccccceEEEecCCC
Confidence 78877 78999999999999999543
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1.5e-11 Score=103.06 Aligned_cols=186 Identities=15% Similarity=0.231 Sum_probs=144.1
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeee--c-ccceEEEEe----------------------cCCEEEEEeCCceEEEEe
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKA--R-HGEVRAILA----------------------HDNMLFTTNKDCKIRIWN 55 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~--h-~~~v~~i~~----------------------~~~~l~s~~~dg~i~iw~ 55 (358)
|+|....||.+|+|+..+++....+.. | ++..++..| +...++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 578888999999999998887666532 1 222222221 234778888999999999
Q ss_pred cccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccC
Q 038537 56 FTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESN 135 (358)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 135 (358)
+..++....... ..|.+.|.++.++.+-..|.+++.|+.+..|+....+ .++.+......
T Consensus 87 ~~~g~it~~~st------------------~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~--~~~~~~~~~~~ 146 (541)
T KOG4547|consen 87 VAGGEITAKLST------------------DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV--IIRIWKEQKPL 146 (541)
T ss_pred ecCCeEEEEEec------------------CCCCCcceeeecccccCceEecCCceeEEEEecccce--eeeeeccCCCc
Confidence 988876543221 5799999999999988999999999999999999888 67777788889
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCC---CcEEEE-eecCCcEEEEEcc
Q 038537 136 VNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFD---NYFLYS-GSSDGSINFWEKD 211 (358)
Q Consensus 136 v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~~-~~~dg~i~i~d~~ 211 (358)
+.+++++||+..+++++ ++|++||++ ..+....+.+|.++|.++.|....+ |.++++ ...+.-+.+|-.+
T Consensus 147 ~~sl~is~D~~~l~~as--~~ik~~~~~----~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS--RQIKVLDIE----TKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred cceEEEcCCCCEEEecc--ceEEEEEcc----CceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 99999999999999876 789999994 4456788899999999999987211 455554 4446667888766
Q ss_pred C
Q 038537 212 K 212 (358)
Q Consensus 212 ~ 212 (358)
.
T Consensus 221 ~ 221 (541)
T KOG4547|consen 221 K 221 (541)
T ss_pred c
Confidence 5
No 244
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.49 E-value=7.7e-12 Score=97.60 Aligned_cols=263 Identities=14% Similarity=0.185 Sum_probs=158.6
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCC-EEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDN-MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|+.+.- .+.|-|..+.+..+.+.. -..|.-+.+ +.. .|.....|+.|.+|++...+-..
T Consensus 23 iAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~c--------------- 85 (447)
T KOG4497|consen 23 IASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYC--------------- 85 (447)
T ss_pred eeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEE---------------
Confidence 4444433 566666666554443332 233444444 333 45556788999999988654321
Q ss_pred ecCCCccccCCCceEEEEEeCCCC-EEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC---
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEG-LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD--- 154 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 154 (358)
.+....+++..++|+|+|+ .|.+...+-.|.+|.+.+.+. ..++.....+..++|+|+|++.+.++.-
T Consensus 86 -----kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~---~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCk 157 (447)
T KOG4497|consen 86 -----KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG---YLLPHPKTNVKGYAFHPDGQFCAILSRRDCK 157 (447)
T ss_pred -----EeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee---EEecccccCceeEEECCCCceeeeeecccHH
Confidence 2245567799999999996 556677889999999988762 2222234456788888888877666542
Q ss_pred ---------------------------------CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec
Q 038537 155 ---------------------------------GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS 201 (358)
Q Consensus 155 ---------------------------------g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 201 (358)
..+.+||-- .+...-.-.....+..++|+| .+++|++|+.
T Consensus 158 dyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~-----Leykv~aYe~~lG~k~v~wsP--~~qflavGsy 230 (447)
T KOG4497|consen 158 DYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV-----LEYKVYAYERGLGLKFVEWSP--CNQFLAVGSY 230 (447)
T ss_pred HHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch-----hhheeeeeeeccceeEEEecc--ccceEEeecc
Confidence 123333321 011100111235788899998 8999999999
Q ss_pred CCcEEEEEccCCcC---------------------C-----------------------------ccc------ccee--
Q 038537 202 DGSINFWEKDKMSG---------------------G-----------------------------FNH------GGFL-- 223 (358)
Q Consensus 202 dg~i~i~d~~~~~~---------------------~-----------------------------~~~------~~~~-- 223 (358)
|+.+++.+--+-+. . ... ...+
T Consensus 231 D~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp 310 (447)
T KOG4497|consen 231 DQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKP 310 (447)
T ss_pred chhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccC
Confidence 99998864221000 0 000 0000
Q ss_pred ------ecccceeEEEeeeCCEEEEeeCC--CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEc
Q 038537 224 ------QGHCFAVLCLVAIEKLIFSGSED--TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSS 295 (358)
Q Consensus 224 ------~~~~~~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~ 295 (358)
........++++|..++++-... ..+-+||++..+ ....+ ....+|....|+|..+ .|+.+
T Consensus 311 ~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~----l~avL-iQk~piraf~WdP~~p------rL~vc 379 (447)
T KOG4497|consen 311 PTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK----LHAVL-IQKHPIRAFEWDPGRP------RLVVC 379 (447)
T ss_pred CCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh----hhhhh-hhccceeEEEeCCCCc------eEEEE
Confidence 00112236677778888876533 568999999863 22222 3456899999999954 45555
Q ss_pred cCCCcEEEEEee
Q 038537 296 SLDQTFKVWRVK 307 (358)
Q Consensus 296 ~~dg~v~iw~~~ 307 (358)
.....+++|...
T Consensus 380 tg~srLY~W~ps 391 (447)
T KOG4497|consen 380 TGKSRLYFWAPS 391 (447)
T ss_pred cCCceEEEEcCC
Confidence 445579999865
No 245
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.49 E-value=4.5e-10 Score=92.62 Aligned_cols=270 Identities=11% Similarity=0.037 Sum_probs=159.6
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeC----------CceEEEEecccccccccccccccCCCceeee
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNK----------DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~----------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
++|.+.|..+.+.+..+.....+-..++++++.|+++.. +..|.+||..+.+......+...|.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~------ 100 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR------ 100 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch------
Confidence 889999999999888887654443348888887776655 7899999999988876555432211
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEe-c-CCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGS-F-DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
.........++++|+|++|+... . +..|.+.|+.+++ .+..+.- .+...-...+++..+ +-+.||.
T Consensus 101 -------~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k--vv~ei~v-p~~~~vy~t~e~~~~--~~~~Dg~ 168 (352)
T TIGR02658 101 -------FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA--FVRMMDV-PDCYHIFPTANDTFF--MHCRDGS 168 (352)
T ss_pred -------hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCc--EEEEEeC-CCCcEEEEecCCccE--EEeecCc
Confidence 00122245788999999998775 3 6899999999988 4444432 111122222222222 2234555
Q ss_pred EEEEEceecCCcceeeeee-cccCCceeE-EEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccc-cee---------e
Q 038537 157 VKIWRRVYRENSHTLTMTL-KFQQSSVNA-LALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG-GFL---------Q 224 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~-~~~~~~i~~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~---------~ 224 (358)
.....+............. ......+.. -.+.+ .++.++.+... |.|.+.|+.......... ..+ .
T Consensus 169 ~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr 246 (352)
T TIGR02658 169 LAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN-KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR 246 (352)
T ss_pred eEEEEecCCCceEEeeeeeecCCccccccCCceEc-CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccC
Confidence 5554443322211111110 000000000 02333 26677766665 999999965422111110 000 1
Q ss_pred cccceeEEEeeeCCEEEEee----------CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCe-EEE
Q 038537 225 GHCFAVLCLVAIEKLIFSGS----------EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGF-LVY 293 (358)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~-~l~ 293 (358)
.......+++++++.+++.. ..+.|.++|..+. +.+..+.. ...+..|+++|+ ++ +|+
T Consensus 247 P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~----kvi~~i~v-G~~~~~iavS~D------gkp~ly 315 (352)
T TIGR02658 247 PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG----KRLRKIEL-GHEIDSINVSQD------AKPLLY 315 (352)
T ss_pred CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----eEEEEEeC-CCceeeEEECCC------CCeEEE
Confidence 11112378888888777742 2257999999998 44554432 347899999999 66 665
Q ss_pred Ecc-CCCcEEEEEeeeC
Q 038537 294 SSS-LDQTFKVWRVKVM 309 (358)
Q Consensus 294 s~~-~dg~v~iw~~~~~ 309 (358)
+.. .++.|.+.|+.+.
T Consensus 316 vtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 316 ALSTGDKTLYIFDAETG 332 (352)
T ss_pred EeCCCCCcEEEEECcCC
Confidence 444 6889999998754
No 246
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.48 E-value=3.8e-11 Score=103.09 Aligned_cols=264 Identities=10% Similarity=0.061 Sum_probs=160.9
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSK 81 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
+++++.+|.|..+|..+++.+...............+++.++.++.+|.+..+|..+++..+......
T Consensus 68 v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------------ 135 (377)
T TIGR03300 68 VYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS------------ 135 (377)
T ss_pred EEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc------------
Confidence 67788899999999999988776655443333455678889999999999999999888776533211
Q ss_pred CCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCe-----EEEEEcCCCCEEEEEeCCCc
Q 038537 82 SNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNV-----NAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 82 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~ 156 (358)
.+.+.... .+..++.++.++.+..+|.++++ .+-.+......+ .+.... +..++.+..+|.
T Consensus 136 ---------~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~--~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~ 201 (377)
T TIGR03300 136 ---------EVLSPPLV-ANGLVVVRTNDGRLTALDAATGE--RLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGK 201 (377)
T ss_pred ---------eeecCCEE-ECCEEEEECCCCeEEEEEcCCCc--eeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCE
Confidence 11111111 24467777889999999998887 332222111111 111111 346778888999
Q ss_pred EEEEEceecCCcceeeeeecccCC---ceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQS---SVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL 233 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 233 (358)
+..+|+++++..+........... ....+.-.|...+..+++++.+|.++.||..+++...... .. .....
T Consensus 202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--~~----~~~~p 275 (377)
T TIGR03300 202 LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD--AS----SYQGP 275 (377)
T ss_pred EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec--cC----CccCc
Confidence 999999877654432211000000 0011111111135678888889999999998754333221 11 11223
Q ss_pred eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCccc-ceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 234 VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRG-PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 234 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~-~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
...+..++.++.+|.++.+|..+++..++ ...... ....... . +..|++++.||.|.++|..+.
T Consensus 276 ~~~~~~vyv~~~~G~l~~~d~~tG~~~W~----~~~~~~~~~ssp~i--~------g~~l~~~~~~G~l~~~d~~tG 340 (377)
T TIGR03300 276 AVDDNRLYVTDADGVVVALDRRSGSELWK----NDELKYRQLTAPAV--V------GGYLVVGDFEGYLHWLSREDG 340 (377)
T ss_pred eEeCCEEEEECCCCeEEEEECCCCcEEEc----cccccCCccccCEE--E------CCEEEEEeCCCEEEEEECCCC
Confidence 34678888888999999999999854332 211111 1111112 1 558888999999999997643
No 247
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.47 E-value=4.8e-13 Score=124.98 Aligned_cols=189 Identities=16% Similarity=0.296 Sum_probs=146.3
Q ss_pred cccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEE
Q 038537 28 RHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLY 105 (358)
Q Consensus 28 h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 105 (358)
+-..|.++..+ .-+.+||+.||.+++|....++.+..... .+. ..|+.+.|+.+|+.+.
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt------------------~g~-s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT------------------AGN-SRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec------------------cCc-chhhhhhhcccCCcee
Confidence 34456666544 45889999999999999988776644332 233 7799999999999999
Q ss_pred EEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEe---CCCcEEEEEceecCCcceeeeeecccCCce
Q 038537 106 TGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCS---SDGSVKIWRRVYRENSHTLTMTLKFQQSSV 182 (358)
Q Consensus 106 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i 182 (358)
.+..||.+.+|.... + +....+.|+.......|-. ..+++++ .++.+.+||..-..... .....|.+.+
T Consensus 2268 i~d~dg~l~l~q~~p-k--~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s---~v~~~H~~ga 2339 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP-K--PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS---LVHTCHDGGA 2339 (2439)
T ss_pred eeccCCceeecccCC-c--ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc---eeeeecCCCc
Confidence 999999999999873 3 5677788999999998874 5666664 37899999975333222 2237899999
Q ss_pred eEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 183 NALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
+++++.| ....|++|+.+|.|++||++..+ +...++. +. ...++++|+..|.++||++..-
T Consensus 2340 T~l~~~P--~~qllisggr~G~v~l~D~rqrq----l~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2340 TVLAYAP--KHQLLISGGRKGEVCLFDIRQRQ----LRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred eEEEEcC--cceEEEecCCcCcEEEeehHHHH----HHHHhhh-------hh-hhheeeccCcccceEEEEcccc
Confidence 9999999 99999999999999999998732 2211211 33 5689999999999999999876
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.47 E-value=5.6e-11 Score=103.69 Aligned_cols=189 Identities=15% Similarity=0.066 Sum_probs=119.3
Q ss_pred cCCCceEEEEEeCCCCEEEEEecC---CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEE-EeCCC--cEEEE
Q 038537 87 QHRDCVSCMAFYHAEGLLYTGSFD---KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFT-CSSDG--SVKIW 160 (358)
Q Consensus 87 ~h~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~~w 160 (358)
.+...+...+|+|+|+.|+.+..+ ..|++||+.+++... +..+...+.+++|+|+++.|+. .+.++ .|++|
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~---~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~ 263 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK---VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM 263 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---eecCCCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence 455568889999999999887654 479999998876322 2334556677899999987764 44444 58888
Q ss_pred EceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-CC--cEEEEEccCCcCCccccceeecccceeEEEeeeC
Q 038537 161 RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-DG--SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE 237 (358)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (358)
|+.++.. ..+..+........|+| +++.|+..+. ++ .|+++|+..... ... ...+.......+++++
T Consensus 264 d~~~~~~-----~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~--~~l-~~~~~~~~~~~~spdg 333 (417)
T TIGR02800 264 DLDGKQL-----TRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV--RRL-TFRGGYNASPSWSPDG 333 (417)
T ss_pred ECCCCCE-----EECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE--EEe-ecCCCCccCeEECCCC
Confidence 8765431 11222333445667887 8888776654 33 577777765321 111 1112222345678899
Q ss_pred CEEEEeeCCC---eEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCc
Q 038537 238 KLIFSGSEDT---TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQT 300 (358)
Q Consensus 238 ~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~ 300 (358)
++++.++.++ .|.+||+.++.. + .+... .......|+|+ +++|+..+.++.
T Consensus 334 ~~i~~~~~~~~~~~i~~~d~~~~~~--~---~l~~~-~~~~~p~~spd------g~~l~~~~~~~~ 387 (417)
T TIGR02800 334 DLIAFVHREGGGFNIAVMDLDGGGE--R---VLTDT-GLDESPSFAPN------GRMILYATTRGG 387 (417)
T ss_pred CEEEEEEccCCceEEEEEeCCCCCe--E---EccCC-CCCCCceECCC------CCEEEEEEeCCC
Confidence 9998887765 789999887632 1 22222 22345689999 667766666543
No 249
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.4e-11 Score=103.28 Aligned_cols=195 Identities=16% Similarity=0.242 Sum_probs=143.3
Q ss_pred CCCCEEEEEecCCeEEEEEccCCccccccccc---ccccCeEEEEEc--------------------CCCCEEEEEeCCC
Q 038537 99 HAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFV---AHESNVNAIVVN--------------------QDDGFVFTCSSDG 155 (358)
Q Consensus 99 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~~~~~--------------------~~~~~l~~~~~dg 155 (358)
|...++|....||.+++|+...++. ...+. .-++..++..|. .+...++-|...|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~--~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQL--QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred chhheEeecCCCCeEEEEEccCcee--eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 4556899999999999999988773 22222 123445555552 2345788899999
Q ss_pred cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec--ccceeEEE
Q 038537 156 SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG--HCFAVLCL 233 (358)
Q Consensus 156 ~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~ 233 (358)
.|.+|++..++....+ ....|.+.|.++.++. +-..|.+++.|+.+..|+.... ........ ......|+
T Consensus 81 ~v~~ys~~~g~it~~~--st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~----~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKL--STDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEK----VIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred cEEEEEecCCeEEEEE--ecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccc----eeeeeeccCCCccceEEE
Confidence 9999998666543333 3356889999999887 8889999999999999998872 22222222 23344778
Q ss_pred eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 234 VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 234 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
++++..+++++ +.|.+||+.++ +.+..+.+|.++|++++|-..........+|.+...+..+.+|-++..
T Consensus 153 s~D~~~l~~as--~~ik~~~~~~k----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 153 SPDGKILLTAS--RQIKVLDIETK----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred cCCCCEEEecc--ceEEEEEccCc----eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 88999999886 57999999998 789999999999999999876332222346666777888999998863
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=9.9e-10 Score=87.36 Aligned_cols=274 Identities=10% Similarity=0.126 Sum_probs=174.8
Q ss_pred CCcEEEEeCCCc--ee-eeeeeecccceEEEEe--cCCEEEEEeC---CceEEEEecccc--cccccccccccCCCceee
Q 038537 8 STRIRVWRQPDC--VE-RGFIKARHGEVRAILA--HDNMLFTTNK---DCKIRIWNFTVS--DNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 8 dg~v~vw~~~~~--~~-~~~~~~h~~~v~~i~~--~~~~l~s~~~---dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~ 77 (358)
+.-|++|++.+. +. ...+-.+.+..+-+.+ +.++|.++-. +|.|..|.++.. ... ....
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~ln~---------- 83 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-FLNR---------- 83 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-Eeec----------
Confidence 456999998632 21 1122234455555555 5667887754 577888887753 221 1110
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEec-CCeEEEEEccC-CcccccccccccccC----------eEEEEEcCCC
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF-DKTVKAWRVLD-KRCTCVDSFVAHESN----------VNAIVVNQDD 145 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~-~~~~~~~~~~~~~~~----------v~~~~~~~~~ 145 (358)
..+.++ +-+.+++++++++++++.. .|.|.++-++. +..........|.+. +....+.|++
T Consensus 84 -----~~~~g~--~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 84 -----QTLPGS--PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG 156 (346)
T ss_pred -----cccCCC--CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence 011222 2378999999999998865 47999999865 443333333345544 8899999999
Q ss_pred CEEEEEeC-CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-CCcEEEEEccCCcCCccccce-
Q 038537 146 GFVFTCSS-DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-DGSINFWEKDKMSGGFNHGGF- 222 (358)
Q Consensus 146 ~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~- 222 (358)
+++++.+- ...|.+|++..+.....-...+ ......+.+.|+| ++++..+..+ +++|.+|........+...+.
T Consensus 157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHp--n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHP--NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred CEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcC--CCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence 99988764 3469999998654433333333 3456778999999 8888776554 899999998874332222221
Q ss_pred ------eec-ccceeEEEeeeCCEEEEee-CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEE
Q 038537 223 ------LQG-HCFAVLCLVAIEKLIFSGS-EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYS 294 (358)
Q Consensus 223 ------~~~-~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s 294 (358)
+.+ ....-..++++|++|+++. ....|-+|.+.......+.+.....+...-+...+++. +++|++
T Consensus 234 ~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~------g~~Lia 307 (346)
T COG2706 234 DTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPS------GRFLIA 307 (346)
T ss_pred ccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCC------CCEEEE
Confidence 111 2234467789999999876 33468888776543222444444445455688899998 778877
Q ss_pred ccCC-CcEEEEEeee
Q 038537 295 SSLD-QTFKVWRVKV 308 (358)
Q Consensus 295 ~~~d-g~v~iw~~~~ 308 (358)
+..| ..|.+|.++.
T Consensus 308 a~q~sd~i~vf~~d~ 322 (346)
T COG2706 308 ANQKSDNITVFERDK 322 (346)
T ss_pred EccCCCcEEEEEEcC
Confidence 7754 5699998874
No 251
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.45 E-value=6.1e-11 Score=103.42 Aligned_cols=212 Identities=10% Similarity=0.006 Sum_probs=130.8
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEE--EecCCEEEEEeCC---ceEEEEecccccccccccccccCCCceeeeecCCC
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAI--LAHDNMLFTTNKD---CKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSN 83 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i--~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
..|.++|...... ..+..+...+... ++++++|+.++.+ ..|++||+.+++....
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~------------------- 229 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV------------------- 229 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-------------------
Confidence 3588888754443 4444555556554 4578888877643 4799999987643211
Q ss_pred ccccCCCceEEEEEeCCCCEEEE-EecCC--eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-CC--cE
Q 038537 84 TQQQHRDCVSCMAFYHAEGLLYT-GSFDK--TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DG--SV 157 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i 157 (358)
..+...+.+++|+|+++.|+. .+.++ .|.+||+.++.. ..+..+........|+|+++.|+.++. ++ .|
T Consensus 230 --~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~i 304 (417)
T TIGR02800 230 --ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL---TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQI 304 (417)
T ss_pred --ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE---EECCCCCCCCCCEEECCCCCEEEEEECCCCCceE
Confidence 223344667899999987764 44444 588889887652 233334444556789999998876654 33 46
Q ss_pred EEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC---cEEEEEccCCcCCccccceeecccceeEEEe
Q 038537 158 KIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG---SINFWEKDKMSGGFNHGGFLQGHCFAVLCLV 234 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
.++|+..++. ..+..+........|+| ++++++.++.++ .|.+||+.+... .... ......-..++
T Consensus 305 y~~d~~~~~~-----~~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~--~~l~--~~~~~~~p~~s 373 (417)
T TIGR02800 305 YMMDADGGEV-----RRLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGE--RVLT--DTGLDESPSFA 373 (417)
T ss_pred EEEECCCCCE-----EEeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCe--EEcc--CCCCCCCceEC
Confidence 7777654321 12222345567788888 899998888776 788888876321 1111 11111224688
Q ss_pred eeCCEEEEeeCCC---eEEEEEcCC
Q 038537 235 AIEKLIFSGSEDT---TIRVWRRAE 256 (358)
Q Consensus 235 ~~~~~l~~~~~dg---~i~iwd~~~ 256 (358)
++++.|+..+.++ .+++.+...
T Consensus 374 pdg~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 374 PNGRMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred CCCCEEEEEEeCCCcEEEEEEECCC
Confidence 8998888776553 355555443
No 252
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.43 E-value=1.2e-10 Score=100.01 Aligned_cols=262 Identities=14% Similarity=0.129 Sum_probs=155.6
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSK 81 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
++.++.+|.+..+|..+++.+................++.++.++.+|.|..||..+++.+..........
T Consensus 108 v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~--------- 178 (377)
T TIGR03300 108 VFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPAL--------- 178 (377)
T ss_pred EEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCce---------
Confidence 56788899999999999988766543322111223356778888889999999999888766543211100
Q ss_pred CCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccc--c---CeEEEEEcC--CCCEEEEEeCC
Q 038537 82 SNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHE--S---NVNAIVVNQ--DDGFVFTCSSD 154 (358)
Q Consensus 82 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~---~v~~~~~~~--~~~~l~~~~~d 154 (358)
.+.....+ ... + ..++.+..++.+..+|..+++..-........ . ....+.-+| .+..+++++.+
T Consensus 179 --~~~~~~sp----~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~ 250 (377)
T TIGR03300 179 --TLRGSASP----VIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ 250 (377)
T ss_pred --eecCCCCC----EEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC
Confidence 00001111 111 2 46777888899999999887621111111000 0 000111111 35678888899
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV 234 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
|.++.+|..+++..+.... ........ .+..+++++.+|.+..+|..+++....... .... ......
T Consensus 251 g~l~a~d~~tG~~~W~~~~------~~~~~p~~----~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~-~~~~--~~ssp~ 317 (377)
T TIGR03300 251 GRVAALDLRSGRVLWKRDA------SSYQGPAV----DDNRLYVTDADGVVVALDRRSGSELWKNDE-LKYR--QLTAPA 317 (377)
T ss_pred CEEEEEECCCCcEEEeecc------CCccCceE----eCCEEEEECCCCeEEEEECCCCcEEEcccc-ccCC--ccccCE
Confidence 9999999987764443321 11112222 466788888999999999987543333211 1111 111112
Q ss_pred eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEE
Q 038537 235 AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304 (358)
Q Consensus 235 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw 304 (358)
..+..+++++.+|.|+++|..++ +.+..++.+...+..--... +..|+.++.||.|..|
T Consensus 318 i~g~~l~~~~~~G~l~~~d~~tG----~~~~~~~~~~~~~~~sp~~~-------~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 318 VVGGYLVVGDFEGYLHWLSREDG----SFVARLKTDGSGIASPPVVV-------GDGLLVQTRDGDLYAF 376 (377)
T ss_pred EECCEEEEEeCCCEEEEEECCCC----CEEEEEEcCCCccccCCEEE-------CCEEEEEeCCceEEEe
Confidence 35789999999999999999998 44555555544332222222 3457788899998876
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=4.2e-10 Score=98.34 Aligned_cols=197 Identities=14% Similarity=0.042 Sum_probs=120.0
Q ss_pred ccCCCceEEEEEeCCCCEEEEEecC---CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEE-EeCCC--cEEE
Q 038537 86 QQHRDCVSCMAFYHAEGLLYTGSFD---KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFT-CSSDG--SVKI 159 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~~ 159 (358)
..+...+....|+|+|+.|+..+.+ ..|.+||+.+++...+... .+.+....|+|+|+.|+. ...+| .|++
T Consensus 195 ~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 195 LQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---EGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred ecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---CCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 3456678999999999998876544 3699999988763333322 334557899999998874 44455 5788
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-CC--cEEEEEccCCcCCccccceeecccceeEEEeee
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-DG--SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI 236 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (358)
+|+.++.. ..+..+........|+| +++.++..+. +| .|+++|+..+.. ... ...+.......++|+
T Consensus 272 ~d~~~~~~-----~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~--~~l-t~~~~~~~~~~~Spd 341 (430)
T PRK00178 272 MDLASRQL-----SRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRA--ERV-TFVGNYNARPRLSAD 341 (430)
T ss_pred EECCCCCe-----EEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCE--EEe-ecCCCCccceEECCC
Confidence 88865532 11222344556678888 8887766554 33 466667655321 111 112222334578899
Q ss_pred CCEEEEeeCC-C--eEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEcc-CCCcEEEEEee
Q 038537 237 EKLIFSGSED-T--TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSS-LDQTFKVWRVK 307 (358)
Q Consensus 237 ~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~-~dg~v~iw~~~ 307 (358)
++.|+....+ + .|.++|+.+++. +.+.. . .......|+|+ |+.++..+ .+|.-++|-+.
T Consensus 342 g~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt~--~--~~~~~p~~spd------g~~i~~~~~~~g~~~l~~~~ 404 (430)
T PRK00178 342 GKTLVMVHRQDGNFHVAAQDLQRGSV--RILTD--T--SLDESPSVAPN------GTMLIYATRQQGRGVLMLVS 404 (430)
T ss_pred CCEEEEEEccCCceEEEEEECCCCCE--EEccC--C--CCCCCceECCC------CCEEEEEEecCCceEEEEEE
Confidence 9988776543 3 588899988743 22221 1 12234589999 66665544 44444444443
No 254
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.40 E-value=3.8e-10 Score=95.13 Aligned_cols=192 Identities=14% Similarity=0.108 Sum_probs=116.3
Q ss_pred CEE-EEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEc
Q 038537 40 NML-FTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRV 118 (358)
Q Consensus 40 ~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 118 (358)
+++ ++-..+|.|.+.|..+.+.+.... .....-..+.++|||+++++++.||.|.++|+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~--------------------~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~ 65 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIP--------------------TGGAPHAGLKFSPDGRYLYVANRDGTVSVIDL 65 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE---------------------STTEEEEEE-TT-SSEEEEEETTSEEEEEET
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEc--------------------CCCCceeEEEecCCCCEEEEEcCCCeEEEEEC
Confidence 444 455678999999998877664332 22222344778999999999999999999999
Q ss_pred cCCcccccccccccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEceecCCcceeeeee---cccCCceeEEEEeecCCCc
Q 038537 119 LDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCS-SDGSVKIWRRVYRENSHTLTMTL---KFQQSSVNALALSSFFDNY 194 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~ 194 (358)
.+.+ .+..+.. .....++++++||++++++. .++.+.++|.++.+....+.... ......+..+..+| ...
T Consensus 66 ~~~~--~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~--~~~ 140 (369)
T PF02239_consen 66 ATGK--VVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASP--GRP 140 (369)
T ss_dssp TSSS--EEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-S--SSS
T ss_pred Cccc--EEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecC--CCC
Confidence 9988 6666654 34568899999999988775 58999999987655443332211 11234566777776 566
Q ss_pred EEE-EeecCCcEEEEEccCCcCCccccceee-cccceeEEEeeeCCEEEEe-eCCCeEEEEEcCCCc
Q 038537 195 FLY-SGSSDGSINFWEKDKMSGGFNHGGFLQ-GHCFAVLCLVAIEKLIFSG-SEDTTIRVWRRAEGG 258 (358)
Q Consensus 195 ~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 258 (358)
.++ +--..+.|.+.|....... ....+. +....=..+++++++++++ ..+..|-++|..+++
T Consensus 141 ~fVv~lkd~~~I~vVdy~d~~~~--~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 141 EFVVNLKDTGEIWVVDYSDPKNL--KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp EEEEEETTTTEEEEEETTTSSCE--EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred EEEEEEccCCeEEEEEecccccc--ceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 444 4444588888887764211 111111 1111124667788876654 456678888877664
No 255
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.40 E-value=1.1e-10 Score=89.75 Aligned_cols=191 Identities=15% Similarity=0.179 Sum_probs=128.2
Q ss_pred cCCeEEEEEccCCccccccccc-ccccCeEEEEEcC---CCC-EEEEEeCCCcEEEEEceecCCcceeeeeecccCC---
Q 038537 109 FDKTVKAWRVLDKRCTCVDSFV-AHESNVNAIVVNQ---DDG-FVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQS--- 180 (358)
Q Consensus 109 ~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~---~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~--- 180 (358)
..|.+.+|++.+.+..+...++ ...+.+..+.|.- ++. .++-+..+|.|.++..........+ ..+.....
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L-~~ls~~ki~~~ 122 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL-RGLSSKKISVV 122 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee-cccchhhhhhe
Confidence 3477899998877644433332 2345667777763 444 5667778899999976433322221 11111111
Q ss_pred ceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee---eCCEEEEeeCCCeEEEEEcCCC
Q 038537 181 SVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA---IEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 181 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
...++.|++ .+..++++..+|.+.+-+... ......+..+.|........+ +++++++|+.|+.+..||++..
T Consensus 123 ~~lslD~~~--~~~~i~vs~s~G~~~~v~~t~--~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 123 EALSLDIST--SGTKIFVSDSRGSISGVYETE--MVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred eeeEEEeec--cCceEEEEcCCCcEEEEecce--eeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence 234556666 778899999999998555443 122333356677766654443 4689999999999999999944
Q ss_pred ceeeeeeee-ecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCC
Q 038537 258 GCYHECLAV-LDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQ 312 (358)
Q Consensus 258 ~~~~~~~~~-~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 312 (358)
+ +.+.. .+-|...|.+|.-+|.. +.+++||+.|-.|++||.+++.++
T Consensus 199 ~---~~i~~n~kvH~~GV~SI~ss~~~-----~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 199 K---TFIWHNSKVHTSGVVSIYSSPPK-----PTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred c---ceeeecceeeecceEEEecCCCC-----CceEEEeccccceeeeehhcccCc
Confidence 2 33333 56799999999999875 479999999999999999976554
No 256
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=2.9e-10 Score=99.34 Aligned_cols=232 Identities=9% Similarity=-0.030 Sum_probs=138.8
Q ss_pred cEEEEeCCCceeeeeeeecccceEEE--EecCCEEEEEeCC---ceEEEEecccccccccccccccCCCceeeeecCCCc
Q 038537 10 RIRVWRQPDCVERGFIKARHGEVRAI--LAHDNMLFTTNKD---CKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNT 84 (358)
Q Consensus 10 ~v~vw~~~~~~~~~~~~~h~~~v~~i--~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
.|.++|...... ..+..+...+... +++++.|+..+.+ ..|.+|++.+++....
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-------------------- 238 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-------------------- 238 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc--------------------
Confidence 477778765543 4455566666655 4578888766543 3688999987654221
Q ss_pred cccCCCceEEEEEeCCCCEEEE-EecCC--eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-CC--cEE
Q 038537 85 QQQHRDCVSCMAFYHAEGLLYT-GSFDK--TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DG--SVK 158 (358)
Q Consensus 85 ~~~h~~~v~~~~~~~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~ 158 (358)
....+.+....|+|+|+.|+. .+.+| .|.++|+.+++. ..+..+........|+|+++.++..+. +| .|+
T Consensus 239 -~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy 314 (430)
T PRK00178 239 -TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQL---SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIY 314 (430)
T ss_pred -cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCe---EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEE
Confidence 111223456899999998764 44454 688889988763 233344555667889999998776654 34 466
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC-C--cEEEEEccCCcCCccccceeecccceeEEEee
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD-G--SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA 235 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (358)
++|+.+++. ..+. . .........|+| +++.++..+.+ + .|.++|+.++.. .... ......-..++|
T Consensus 315 ~~d~~~g~~-~~lt--~--~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~--~~lt--~~~~~~~p~~sp 383 (430)
T PRK00178 315 KVNVNGGRA-ERVT--F--VGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSV--RILT--DTSLDESPSVAP 383 (430)
T ss_pred EEECCCCCE-EEee--c--CCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCE--EEcc--CCCCCCCceECC
Confidence 666654431 1111 1 122234567887 88888877653 3 478888876432 1111 111112247889
Q ss_pred eCCEEEEeeCC---CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecc
Q 038537 236 IEKLIFSGSED---TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 236 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
+++.++..+.+ ..|+++++.... ...+..+.+.+...+|+|-
T Consensus 384 dg~~i~~~~~~~g~~~l~~~~~~g~~-----~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 384 NGTMLIYATRQQGRGVLMLVSINGRV-----RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCCEEEEEEecCCceEEEEEECCCCc-----eEECcCCCCCcCCCccCCC
Confidence 99888766543 347777775432 2334445566777788874
No 257
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=3.2e-11 Score=100.94 Aligned_cols=189 Identities=10% Similarity=0.161 Sum_probs=141.1
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
|+.++....|+-.|++.|..+..+....+.++++..+ ..+|++|+.+|.|..||..............
T Consensus 148 ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~---------- 217 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS---------- 217 (703)
T ss_pred EEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc----------
Confidence 4555666679999999999999999888999988775 5688888999999999988765443322211
Q ss_pred cCCCccccCC-----CceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccc-ccccccCeEEEEEcCC--CCEEEEE
Q 038537 80 SKSNTQQQHR-----DCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDS-FVAHESNVNAIVVNQD--DGFVFTC 151 (358)
Q Consensus 80 ~~~~~~~~h~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~--~~~l~~~ 151 (358)
.+..|. ..|+++.|+.+|-.+++|+.+|.+.|||+++.+ ++.. -....-+|..+.|.+. ++.+++
T Consensus 218 ----~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--pl~~kdh~~e~pi~~l~~~~~~~q~~v~S- 290 (703)
T KOG2321|consen 218 ----SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--PLLVKDHGYELPIKKLDWQDTDQQNKVVS- 290 (703)
T ss_pred ----ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC--ceeecccCCccceeeecccccCCCceEEe-
Confidence 112233 349999999989999999999999999999887 3322 2234568999999774 344544
Q ss_pred eCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCc
Q 038537 152 SSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMS 214 (358)
Q Consensus 152 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 214 (358)
.....++|||-.+++....+. ....+..+++.| ++.+++++-.++.+..|-+....
T Consensus 291 ~Dk~~~kiWd~~~Gk~~asiE-----pt~~lND~C~~p--~sGm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 291 MDKRILKIWDECTGKPMASIE-----PTSDLNDFCFVP--GSGMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred cchHHhhhcccccCCceeecc-----ccCCcCceeeec--CCceEEEecCCCcceeEEccccC
Confidence 456789999987766433322 345688999998 99999999999998888776643
No 258
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=4e-12 Score=106.05 Aligned_cols=250 Identities=16% Similarity=0.193 Sum_probs=161.3
Q ss_pred eeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC
Q 038537 22 RGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99 (358)
Q Consensus 22 ~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 99 (358)
+..+.+|...|.++.. +.+-+++++.|.+|++|.+.......... ...-++..|+.+|..+.|..
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts-------------aCQfTY~aHkk~i~~igfL~ 794 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS-------------ACQFTYQAHKKPIHDIGFLA 794 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc-------------eeeeEhhhccCcccceeeee
Confidence 4567789999998855 56789999999999999987532211111 11125688999999999998
Q ss_pred CCCEEEEEecCCeEEEEEccCCcccccccc--cccccCeEEEEEcC--CCCEEEEE-eCCCcEEEEEceecCCcceeeee
Q 038537 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSF--VAHESNVNAIVVNQ--DDGFVFTC-SSDGSVKIWRRVYRENSHTLTMT 174 (358)
Q Consensus 100 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~--~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~ 174 (358)
+.+.+++ .||-|.+||.--++ .+... ....+.+..+..-+ +...++++ +...+|+++|.+..+-..+....
T Consensus 795 ~lr~i~S--cD~giHlWDPFigr--~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVc 870 (1034)
T KOG4190|consen 795 DLRSIAS--CDGGIHLWDPFIGR--LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVC 870 (1034)
T ss_pred ccceeee--ccCcceeecccccc--hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEec
Confidence 8877775 47889999987666 33322 12233444444444 34455555 67899999999876654444322
Q ss_pred -ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE-eeeCCEEEEeeCCCeEEE-
Q 038537 175 -LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL-VAIEKLIFSGSEDTTIRV- 251 (358)
Q Consensus 175 -~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~dg~i~i- 251 (358)
-.+.+..+.++++.+ .|+.++++-.+|.|.+.|.+++..... ..........+ .|..+.++....|.++.+
T Consensus 871 na~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINs----wrpmecdllqlaapsdq~L~~saldHslaVn 944 (1034)
T KOG4190|consen 871 NAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINS----WRPMECDLLQLAAPSDQALAQSALDHSLAVN 944 (1034)
T ss_pred cCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceecc----CCcccchhhhhcCchhHHHHhhcccceeEee
Confidence 133456788999998 899999999999999999998542211 11122222222 466778888888888888
Q ss_pred EEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 252 WRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 252 wd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
|....+ ......+....+-.-+. .- |.-|+++.....+.+|.-
T Consensus 945 Whaldg----imh~q~kpppepahflq--sv------gpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 945 WHALDG----IMHLQDKPPPEPAHFLQ--SV------GPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred ehhcCC----eeeeccCCCCcchhhhh--cc------CceeEEeccCcEEEEEec
Confidence 877666 22222222222211111 11 446777777777888753
No 259
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=6e-10 Score=97.15 Aligned_cols=232 Identities=10% Similarity=-0.016 Sum_probs=132.9
Q ss_pred cEEEEeCCCceeeeeeeecccceEE--EEecCCEEEEEeC-Cc--eEEEEecccccccccccccccCCCceeeeecCCCc
Q 038537 10 RIRVWRQPDCVERGFIKARHGEVRA--ILAHDNMLFTTNK-DC--KIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNT 84 (358)
Q Consensus 10 ~v~vw~~~~~~~~~~~~~h~~~v~~--i~~~~~~l~s~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
.|.++|...... +.+..+...+.. ++++++.|+..+. ++ .|.+||+.+++....
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-------------------- 257 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-------------------- 257 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------
Confidence 566677655443 344445556654 4557887776643 33 588888876643211
Q ss_pred cccCCCceEEEEEeCCCCEEEE-EecCCe--EEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-CCc--EE
Q 038537 85 QQQHRDCVSCMAFYHAEGLLYT-GSFDKT--VKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DGS--VK 158 (358)
Q Consensus 85 ~~~h~~~v~~~~~~~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~ 158 (358)
..........+|+|+|+.|+. .+.+|. |.++|+.+++ ...+..+........|+||++.|+..+. ++. |.
T Consensus 258 -t~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy 333 (448)
T PRK04792 258 -TSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIY 333 (448)
T ss_pred -cCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---eEECccCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence 011122346799999997765 455664 7777887776 2333344555677899999998876654 444 55
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-CC--cEEEEEccCCcCCccccceeecccceeEEEee
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-DG--SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA 235 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (358)
++|+.+++. ..+ .. ........+|+| ++++|+..+. ++ .|.++|+.++.. .... ......-..++|
T Consensus 334 ~~dl~~g~~-~~L--t~--~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~--~~lt--~~~~d~~ps~sp 402 (448)
T PRK04792 334 RVNLASGKV-SRL--TF--EGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAM--QVLT--STRLDESPSVAP 402 (448)
T ss_pred EEECCCCCE-EEE--ec--CCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCe--EEcc--CCCCCCCceECC
Confidence 556544331 111 11 222234567888 8888877655 34 355567665321 1111 111111236889
Q ss_pred eCCEEEEeeC-CC--eEEEEEcCCCceeeeeeeeecCcccceEEEEeecc
Q 038537 236 IEKLIFSGSE-DT--TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 236 ~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
+++.|+..+. +| .+++++.... ....+..+.+.+...+|+|-
T Consensus 403 dG~~I~~~~~~~g~~~l~~~~~~G~-----~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 403 NGTMVIYSTTYQGKQVLAAVSIDGR-----FKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred CCCEEEEEEecCCceEEEEEECCCC-----ceEECcCCCCCcCCCccCCC
Confidence 9987776553 33 3777777443 33445555666778888873
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=2.3e-10 Score=98.55 Aligned_cols=272 Identities=9% Similarity=0.042 Sum_probs=179.8
Q ss_pred CEEeeeCCCcEEEEeCCCc---------------eeeeeeeecccceEEEEecC--CEEEEEeCCceEEEEecccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPDC---------------VERGFIKARHGEVRAILAHD--NMLFTTNKDCKIRIWNFTVSDNFR 63 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~---------------~~~~~~~~h~~~v~~i~~~~--~~l~s~~~dg~i~iw~~~~~~~~~ 63 (358)
|+|.|+.||.++|..+.+. ..-+.+.+|.+.|.-+.|+. ..|-+...+|.|.+|-+-.+.-..
T Consensus 28 yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~E 107 (1189)
T KOG2041|consen 28 YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCE 107 (1189)
T ss_pred eEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHH
Confidence 5899999999999987532 12256789999999999964 478888899999999988765433
Q ss_pred cccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC
Q 038537 64 TKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143 (358)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 143 (358)
.... ....+.|.+++|..+|..+.....||.|.+=.++..+. --..++ ......+.|++
T Consensus 108 EMiN------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-wgKeLk--g~~l~hv~ws~ 166 (1189)
T KOG2041|consen 108 EMIN------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-WGKELK--GQLLAHVLWSE 166 (1189)
T ss_pred HHhh------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-cchhcc--hheccceeecc
Confidence 2211 23456689999999999999999999998888776541 111222 12345788999
Q ss_pred CCCEEEEEeCCCcEEEEEceecCCc-------ceeeeeecccCCceeEEEEeec------CCCcEEEEeecCCcEEEEEc
Q 038537 144 DDGFVFTCSSDGSVKIWRRVYRENS-------HTLTMTLKFQQSSVNALALSSF------FDNYFLYSGSSDGSINFWEK 210 (358)
Q Consensus 144 ~~~~l~~~~~dg~i~~wd~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~------~~~~~l~~~~~dg~i~i~d~ 210 (358)
|.+.++.+-.+|.+.++|....-.. ......+......|..+.|... |+...|+++...|.+.+-.-
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 9999999999999999996432110 0011111112234555665421 47789999999999888654
Q ss_pred cCCcCCccccceeecccceeEEEeeeCCEEEEeeCCC---------eEEEEEcCCCceeeeeeeeecCcccceEEEEeec
Q 038537 211 DKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDT---------TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASL 281 (358)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 281 (358)
.+...+.. ...+....-..+.++|.+|+.++.+. .|.+|.... +.+.+++.....|++++|-.
T Consensus 247 eND~~Pvv---~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G-----~i~gtlkvpg~~It~lsWEg 318 (1189)
T KOG2041|consen 247 ENDPEPVV---VDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG-----HIVGTLKVPGSCITGLSWEG 318 (1189)
T ss_pred cCCCCCeE---EecccEeecceecCCCcEEEEccCcccccCccccceEEEeccch-----hheEEEecCCceeeeeEEcC
Confidence 44222111 11221112234566788998887542 466665443 45677777778899999987
Q ss_pred ccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 282 EMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 282 ~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
. |-.++.+ -|+.|.+=+++.
T Consensus 319 ~------gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 319 T------GLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred C------ceEEEEE-ecceEEEEeecc
Confidence 6 5555544 466777666553
No 261
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=4.7e-12 Score=118.57 Aligned_cols=191 Identities=14% Similarity=0.195 Sum_probs=145.0
Q ss_pred ccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccc-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcee
Q 038537 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFV-AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVY 164 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 164 (358)
..+-..|.++.-+|...+.++|+.||.+++|....++ .+..+. ...+.|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~--~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ--QVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCC--eEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 4456678899989999999999999999999988776 343332 234889999999999999999999999999874
Q ss_pred cCCcceeeeeecccCCceeEEEEeecCCCcEEEEee---cCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEE
Q 038537 165 RENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS---SDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIF 241 (358)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 241 (358)
.++....+.|+.......|- +..+++++ .++.+.+||...... ..+......+...+....|..++|+
T Consensus 2282 ----pk~~~s~qchnk~~~Df~Fi----~s~~~tag~s~d~~n~~lwDtl~~~~-~s~v~~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2282 ----PKPYTSWQCHNKALSDFRFI----GSLLATAGRSSDNRNVCLWDTLLPPM-NSLVHTCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred ----CcceeccccCCccccceeee----ehhhhccccCCCCCcccchhcccCcc-cceeeeecCCCceEEEEcCcceEEE
Confidence 34455677888888888886 35566654 478999999775332 2222223333445556668889999
Q ss_pred EeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 242 SGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 242 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+|+.+|.|++||++.. +++..++. +. . ..++++|+..|.++||++..
T Consensus 2353 sggr~G~v~l~D~rqr----ql~h~~~~---------~~-~------~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQR----QLRHTFQA---------LD-T------REYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred ecCCcCcEEEeehHHH----HHHHHhhh---------hh-h------hheeeccCcccceEEEEccc
Confidence 9999999999999986 33444433 33 3 57999999999999999984
No 262
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.8e-09 Score=93.00 Aligned_cols=193 Identities=12% Similarity=0.010 Sum_probs=113.7
Q ss_pred cCCCceEEEEEeCCCCEEEEEecC---CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEE-EeCCCc--EEEE
Q 038537 87 QHRDCVSCMAFYHAEGLLYTGSFD---KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFT-CSSDGS--VKIW 160 (358)
Q Consensus 87 ~h~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~~w 160 (358)
.+...+.+..|+|+|+.|+..+.+ ..|.+||+.+++...+..+. .......|+||++.|+. .+.+|. |+++
T Consensus 215 ~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 215 RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP---GINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC---CCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 455678899999999988876543 36888999887633333332 23446799999997765 456665 6677
Q ss_pred EceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-CCc--EEEEEccCCcCCccccceeecccceeEEEeeeC
Q 038537 161 RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-DGS--INFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE 237 (358)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (358)
|+.+++. ..+..+........|+| +++.|+..+. ++. |+++|+.++.. ... ...+......+++|++
T Consensus 292 dl~tg~~-----~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~--~~L-t~~g~~~~~~~~SpDG 361 (448)
T PRK04792 292 DIATKAL-----TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKV--SRL-TFEGEQNLGGSITPDG 361 (448)
T ss_pred ECCCCCe-----EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCE--EEE-ecCCCCCcCeeECCCC
Confidence 7754431 12222344556788988 8887766553 444 55566654321 111 1122222235788999
Q ss_pred CEEEEeeC-CC--eEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEE-ccCCCcEEEE
Q 038537 238 KLIFSGSE-DT--TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYS-SSLDQTFKVW 304 (358)
Q Consensus 238 ~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s-~~~dg~v~iw 304 (358)
++|+..+. ++ .|.++|+.+++. +.+ ... .......|+|+ |+.|+. ...+|.-.+|
T Consensus 362 ~~l~~~~~~~g~~~I~~~dl~~g~~--~~l---t~~-~~d~~ps~spd------G~~I~~~~~~~g~~~l~ 420 (448)
T PRK04792 362 RSMIMVNRTNGKFNIARQDLETGAM--QVL---TST-RLDESPSVAPN------GTMVIYSTTYQGKQVLA 420 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCCe--EEc---cCC-CCCCCceECCC------CCEEEEEEecCCceEEE
Confidence 88877654 34 466678877642 222 211 11224479999 655544 4445543344
No 263
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.32 E-value=5e-10 Score=85.24 Aligned_cols=192 Identities=8% Similarity=-0.002 Sum_probs=137.3
Q ss_pred CEEeeeCCCcEEEEeCCCcee-eeeeeecccceEEE---EecCCEEEEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVE-RGFIKARHGEVRAI---LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~-~~~~~~h~~~v~~i---~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
+||.|+..|...+|...+.+. ......|...|.-+ +-..-.+..++.|.++++.+++.+....
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~------------- 152 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF------------- 152 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc-------------
Confidence 478999999999999886543 34444555544432 2234457778889999999887654321
Q ss_pred eeecCCCccccCCC--ceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccc-cccccccCeEEEEEcCCCCEEEEEeC
Q 038537 77 LSFSKSNTQQQHRD--CVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVD-SFVAHESNVNAIVVNQDDGFVFTCSS 153 (358)
Q Consensus 77 ~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~ 153 (358)
.-|.. .+..++++++++++++.+....|..|.+.......+. .....++.-.+..|+.....+|++.+
T Consensus 153 ---------~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Q 223 (344)
T KOG4532|consen 153 ---------AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQ 223 (344)
T ss_pred ---------eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEec
Confidence 12222 2788999999999999999999999999765432333 22334455678899999999999999
Q ss_pred CCcEEEEEceecCCcc-eeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCc
Q 038537 154 DGSVKIWRRVYRENSH-TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMS 214 (358)
Q Consensus 154 dg~i~~wd~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 214 (358)
||++.|||++...... ........|++.+..+.|++..--.+|+..-.-+.+.+.|+++..
T Consensus 224 dg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 224 DGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred CCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 9999999998654322 223344558899999999974344566666667789999999854
No 264
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.32 E-value=4e-11 Score=90.67 Aligned_cols=198 Identities=13% Similarity=0.166 Sum_probs=123.1
Q ss_pred ceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec-
Q 038537 31 EVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF- 109 (358)
Q Consensus 31 ~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~- 109 (358)
+..+.+..++.++++..||.+.+.+.+.......... ..|.+ -.+.+....+..+.++..
T Consensus 93 p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~------------------~~~~~-~as~~~~~~~~~i~s~~~g 153 (319)
T KOG4714|consen 93 PNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIP------------------SIHSG-SASRKICRHGNSILSGGCG 153 (319)
T ss_pred CcccccccCCceEecCCCceEEEEechHHHhhhhhcc------------------ccccc-ccccceeecccEEecCCcc
Confidence 4445556678899999999999999875221111000 01111 111222223444444321
Q ss_pred ----CCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeE
Q 038537 110 ----DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNA 184 (358)
Q Consensus 110 ----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~ 184 (358)
-+..+.|+++..+..... .+ ....|++++-+| ..+.+++|+.||.+.+||.+.. ..+...++.|+.+++.
T Consensus 154 ~~n~~d~~~a~~~~p~~t~~~~-~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~---~~p~S~l~ahk~~i~e 228 (319)
T KOG4714|consen 154 NWNAQDNFYANTLDPIKTLIPS-KK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNV---AMPVSLLKAHKAEIWE 228 (319)
T ss_pred eEeeccceeeeccccccccccc-cc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccc---cchHHHHHHhhhhhhh
Confidence 234566666544311111 11 233499999999 4567778889999999999855 3445567889999999
Q ss_pred EEEeecCCCcEEEEeecCCcEEEEEccCCcC-----C---------------ccccceeecccceeEEEeeeCCEEEEee
Q 038537 185 LALSSFFDNYFLYSGSSDGSINFWEKDKMSG-----G---------------FNHGGFLQGHCFAVLCLVAIEKLIFSGS 244 (358)
Q Consensus 185 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-----~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 244 (358)
+-|+| .++..|++++.||.+--||..+... . ......+......+..|...|..|++|+
T Consensus 229 V~FHp-k~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgt 307 (319)
T KOG4714|consen 229 VHFHP-KNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGT 307 (319)
T ss_pred eeccC-CCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEecc
Confidence 99999 5788999999999999999874100 0 0011111222334455556688899998
Q ss_pred CCCeEEEEE
Q 038537 245 EDTTIRVWR 253 (358)
Q Consensus 245 ~dg~i~iwd 253 (358)
.-+.|++++
T Consensus 308 d~eaIyl~~ 316 (319)
T KOG4714|consen 308 DAEAIYLTR 316 (319)
T ss_pred ccceEEEec
Confidence 888888874
No 265
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1.8e-11 Score=96.15 Aligned_cols=167 Identities=19% Similarity=0.230 Sum_probs=122.4
Q ss_pred EEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeE
Q 038537 105 YTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNA 184 (358)
Q Consensus 105 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~ 184 (358)
++.+.+..|-+-|++++. ...|. ..+.|.++.|...+++++.|+.+|.|..+|++.+..........-.|.+.|++
T Consensus 228 fs~G~sqqv~L~nvetg~---~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH---QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeeccc---ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhh
Confidence 556667789999998885 34444 56789999999989999999999999999999874444334444568899999
Q ss_pred EEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee----EEEeeeCCEEEEeeCCCeEEEEEcCCCcee
Q 038537 185 LALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV----LCLVAIEKLIFSGSEDTTIRVWRRAEGGCY 260 (358)
Q Consensus 185 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 260 (358)
+.... .++.+|.+.+.+|+|++||++..+... -.....+|.... ..+.+.+..+++++.|...|||.+..+.
T Consensus 304 lq~Lq-~s~q~LmaS~M~gkikLyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh-- 379 (425)
T KOG2695|consen 304 LQILQ-FSQQKLMASDMTGKIKLYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH-- 379 (425)
T ss_pred hhhhc-cccceEeeccCcCceeEeeehhhhccc-ceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc--
Confidence 98765 367788889999999999999744422 234455665433 4445667899999999999999999984
Q ss_pred eeeeeeecC----cccceEEEEeec
Q 038537 261 HECLAVLDG----HRGPVRCLAASL 281 (358)
Q Consensus 261 ~~~~~~~~~----h~~~v~~i~~~~ 281 (358)
++.+++- ....+.+++|..
T Consensus 380 --Ll~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 380 --LLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred --eeeccCCCCccccccccceehhc
Confidence 4444432 233455666654
No 266
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.27 E-value=3.6e-09 Score=80.71 Aligned_cols=239 Identities=10% Similarity=-0.043 Sum_probs=145.1
Q ss_pred cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC-CCCEEEEEecCCeEEEE
Q 038537 38 HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH-AEGLLYTGSFDKTVKAW 116 (358)
Q Consensus 38 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iw 116 (358)
...+|+.|+..|...+|...+.+...... ..|...|+-+.=.. ..-.+..++.|.++++.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~c-------------------d~snn~v~~~~r~cd~~~~~~i~sndht~k~~ 143 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQC-------------------DVSNNDVTLVKRYCDLKFPLNIASNDHTGKTM 143 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeee-------------------cccccchhhhhhhcccccceeeccCCcceeEE
Confidence 34689999999999999988655322111 12222222111111 12246778889999999
Q ss_pred EccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEE
Q 038537 117 RVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFL 196 (358)
Q Consensus 117 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 196 (358)
+++.+........+ .-.+.++.++++++++++.+....|..|.+........- .........-.+..|+. ....+
T Consensus 144 ~~~~~s~~~~~h~~--~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~--~~~~F 218 (344)
T KOG4532|consen 144 VVSGDSNKFAVHNQ--NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSE--NDLQF 218 (344)
T ss_pred EEecCcccceeecc--ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeecc--CcceE
Confidence 88765421221111 123889999999999999999999999988644322211 22333344556677776 88899
Q ss_pred EEeecCCcEEEEEccCCcCCccccc-eeecccceeE--EEeeeC--CEEEEeeCCCeEEEEEcCCCceeeeee---eeec
Q 038537 197 YSGSSDGSINFWEKDKMSGGFNHGG-FLQGHCFAVL--CLVAIE--KLIFSGSEDTTIRVWRRAEGGCYHECL---AVLD 268 (358)
Q Consensus 197 ~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~ 268 (358)
|++..||.+.|||++....+..... ....|.+.+. .+++.| .+|+..-.-+.+.+-|+++.......+ ....
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~ 298 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVER 298 (344)
T ss_pred EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccc
Confidence 9999999999999998554333222 2334555554 444433 456665566889999999985421111 1112
Q ss_pred Ccc-cceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 269 GHR-GPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 269 ~h~-~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
.|. ..|..-.|+.+ +.-+.+.+++ .+.=|++.
T Consensus 299 ~~~tq~ifgt~f~~~------n~s~~v~~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 299 KHNTQHIFGTNFNNE------NESNDVKNEL-QGAEYNIL 331 (344)
T ss_pred cccccccccccccCC------Ccccccccch-hhheeecc
Confidence 233 33777788877 4444444444 34455554
No 267
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=9.4e-11 Score=98.07 Aligned_cols=269 Identities=12% Similarity=0.127 Sum_probs=164.2
Q ss_pred EEeeeCCCcEEEEeCC-------CceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 2 VFTGSSSTRIRVWRQP-------DCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~-------~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
+++++.|.+|++|.++ +..+..++..|+.+|.++.+-.+.-..++.||-|.+||.-.+..+........
T Consensus 750 FiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk---- 825 (1034)
T KOG4190|consen 750 FISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPK---- 825 (1034)
T ss_pred eeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeecccccchhHhhhcCcc----
Confidence 5789999999999974 34466778899999999988444333445689999999876665432221110
Q ss_pred eeeeecCCCccccCCCceEEEEEeCCCCEEEE-EecCCeEEEEEccCCcccccccc---cccccCeEEEEEcCCCCEEEE
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYT-GSFDKTVKAWRVLDKRCTCVDSF---VAHESNVNAIVVNQDDGFVFT 150 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~ 150 (358)
.+..+.|.|+.-- +...+.. ++...+|+++|.+..++.+.... .+.+..+.+++..+.|+.+++
T Consensus 826 -----------~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa 893 (1034)
T KOG4190|consen 826 -----------EGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAA 893 (1034)
T ss_pred -----------cCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhH
Confidence 2223334444321 3334444 47789999999998876543332 234567899999999999999
Q ss_pred EeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEE-EEccCCcCCccccceeecccce
Q 038537 151 CSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINF-WEKDKMSGGFNHGGFLQGHCFA 229 (358)
Q Consensus 151 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~ 229 (358)
+-.+|.|.+.|.+++..... .+........++. | ..+.++....|.++.+ |-.-.+..... ....+.+
T Consensus 894 ~LSnGci~~LDaR~G~vINs----wrpmecdllqlaa-p--sdq~L~~saldHslaVnWhaldgimh~q----~kpppep 962 (1034)
T KOG4190|consen 894 ALSNGCIAILDARNGKVINS----WRPMECDLLQLAA-P--SDQALAQSALDHSLAVNWHALDGIMHLQ----DKPPPEP 962 (1034)
T ss_pred HhcCCcEEEEecCCCceecc----CCcccchhhhhcC-c--hhHHHHhhcccceeEeeehhcCCeeeec----cCCCCcc
Confidence 99999999999987763322 1112222222322 2 4566777777888887 75443211111 1111111
Q ss_pred eEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeec--CcccceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 230 VLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLD--GHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 230 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
..-+..-|..++++.....+.+|--.........+..++ ...+..++++--|- ..-++.|...|.|.+
T Consensus 963 ahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPL------N~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 963 AHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPL------NCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccc------cchhhccCCCCceee
Confidence 122233466777777777778874322110011111222 24567788888887 567778888888875
No 268
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.23 E-value=7.8e-09 Score=89.21 Aligned_cols=263 Identities=12% Similarity=0.059 Sum_probs=153.9
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSK 81 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
++.++.+|.+..+|.++++.+...........+-...++.++.+..+|.+..+|..+++.+.........
T Consensus 123 v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~---------- 192 (394)
T PRK11138 123 VYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPS---------- 192 (394)
T ss_pred EEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCc----------
Confidence 4567788999999999999877665433222222334667778888999999999999887765432100
Q ss_pred CCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccc--c---CeEEEEEcC--CCCEEEEEeCC
Q 038537 82 SNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHE--S---NVNAIVVNQ--DDGFVFTCSSD 154 (358)
Q Consensus 82 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~---~v~~~~~~~--~~~~l~~~~~d 154 (358)
....+...++. .+..++.++.+|.+..+|..+++..-...+.... . ....+..+| .+..++.++.+
T Consensus 193 -~~~~~~~sP~v------~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~ 265 (394)
T PRK11138 193 -LTLRGESAPAT------AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN 265 (394)
T ss_pred -ccccCCCCCEE------ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC
Confidence 00011111211 1234666778899999998887621111111000 0 011111122 35567777889
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV 234 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
|.+..+|+.+++..++... .....+.. .+..++.++.+|.+..+|..+++....... .... ......
T Consensus 266 g~l~ald~~tG~~~W~~~~------~~~~~~~~----~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~~~~--~~~sp~ 332 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREY------GSVNDFAV----DGGRIYLVDQNDRVYALDTRGGVELWSQSD-LLHR--LLTAPV 332 (394)
T ss_pred CeEEEEECCCCCEEEeecC------CCccCcEE----ECCEEEEEcCCCeEEEEECCCCcEEEcccc-cCCC--cccCCE
Confidence 9999999987765443321 11112222 456777888899999999987543332211 1110 011111
Q ss_pred eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEE-EEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 235 AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRC-LAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 235 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~-i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
..+..|+.++.+|.|++.|..+++. +...+-....+.+ ..+. +..|+.++.||.|..+++
T Consensus 333 v~~g~l~v~~~~G~l~~ld~~tG~~----~~~~~~~~~~~~s~P~~~--------~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 333 LYNGYLVVGDSEGYLHWINREDGRF----VAQQKVDSSGFLSEPVVA--------DDKLLIQARDGTVYAITR 393 (394)
T ss_pred EECCEEEEEeCCCEEEEEECCCCCE----EEEEEcCCCcceeCCEEE--------CCEEEEEeCCceEEEEeC
Confidence 2467888999999999999999953 3333322222222 1121 347888899999988764
No 269
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.23 E-value=1.9e-08 Score=83.55 Aligned_cols=277 Identities=11% Similarity=0.134 Sum_probs=169.2
Q ss_pred cEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCc---------------eEEEEecccccccccccccccCCCc
Q 038537 10 RIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDC---------------KIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 10 ~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg---------------~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
.|.+|.-+....+..+....-.-..+++++++|.+=+..+ .+.+||..++..+..+.....+...
T Consensus 54 ~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~ 133 (561)
T COG5354 54 GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLG 133 (561)
T ss_pred ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccc
Confidence 4888887776655555433333335566788888765443 4999999988877655544433111
Q ss_pred e-eeeecCC------------------CccccC------CCceEEEEEeCCC--CEEEE-----EecCCeEEEEEccCCc
Q 038537 75 S-FLSFSKS------------------NTQQQH------RDCVSCMAFYHAE--GLLYT-----GSFDKTVKAWRVLDKR 122 (358)
Q Consensus 75 ~-~~~~~~~------------------~~~~~h------~~~v~~~~~~~~~--~~l~~-----~~~dg~i~iwd~~~~~ 122 (358)
- ++.++.. ..+..| ...|....|+|.+ ..|+. .+.++.+++|.+..+.
T Consensus 134 Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s 213 (561)
T COG5354 134 WPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS 213 (561)
T ss_pred cceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC
Confidence 1 1111111 111111 2457888888864 34443 4667899999998665
Q ss_pred ccccccccccccCeEEEEEcCCCCEEEEEeC-----------CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecC
Q 038537 123 CTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-----------DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFF 191 (358)
Q Consensus 123 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 191 (358)
.....++. ...=..+.|.+.|+++++-.. +..+.+++++... +.... ...++|...+|.|..
T Consensus 214 ~l~tk~lf--k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~----i~V~~-~~~~pVhdf~W~p~S 286 (561)
T COG5354 214 VLVTKNLF--KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS----IPVEK-DLKDPVHDFTWEPLS 286 (561)
T ss_pred eeeeeeeE--eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc----cceec-cccccceeeeecccC
Confidence 22223332 222346788888887654321 3567788775222 21211 457899999999944
Q ss_pred CCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCC---CeEEEEEcCCCceeeeeeeeec
Q 038537 192 DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSED---TTIRVWRRAEGGCYHECLAVLD 268 (358)
Q Consensus 192 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~ 268 (358)
++--+++|-.+..+.++|++.. ..............++|.+++++.++-| |.+-+||..... ..+..+.
T Consensus 287 ~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf---~~~~~~~ 358 (561)
T COG5354 287 SRFAVISGYMPASVSVFDLRGN-----LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF---KVAGAFN 358 (561)
T ss_pred CceeEEecccccceeecccccc-----eEEecCCcccccccccCcccEEEEecCCccccceEEeccCCce---EEEEEee
Confidence 4444445567889999999872 2222333444556788999999987755 779999998762 4444454
Q ss_pred CcccceEEEEeecccceeeeCeEEEEcc------CCCcEEEEEeeeC
Q 038537 269 GHRGPVRCLAASLEMEKVVMGFLVYSSS------LDQTFKVWRVKVM 309 (358)
Q Consensus 269 ~h~~~v~~i~~~~~~~~~~~~~~l~s~~------~dg~v~iw~~~~~ 309 (358)
+- .-+-+.|+|+ ++++.+.. .|..+.|||+...
T Consensus 359 ~~--n~s~~~wspd------~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 359 GL--NTSYCDWSPD------GQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred cC--CceEeeccCC------ceEEEecCCCcccccCcceEEEEecCc
Confidence 43 2345679999 66665553 3788999999753
No 270
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.23 E-value=8.2e-08 Score=81.16 Aligned_cols=210 Identities=16% Similarity=0.173 Sum_probs=133.2
Q ss_pred ceEEEEEeCCCCEEEEEec----CCeEEEEEccCC--cccccccccccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEce
Q 038537 91 CVSCMAFYHAEGLLYTGSF----DKTVKAWRVLDK--RCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DGSVKIWRRV 163 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~ 163 (358)
....++++|++++|++... ++.|..|++... ++..+............++++|++++|+++.. +|.|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 3566889999999998876 579999998764 54445444434556678999999999888874 8999999997
Q ss_pred ecCCcceeeeeec----------ccCCceeEEEEeecCCCcEEEEeec-CCcEEEEEccCCcCCccccce---eecccce
Q 038537 164 YRENSHTLTMTLK----------FQQSSVNALALSSFFDNYFLYSGSS-DGSINFWEKDKMSGGFNHGGF---LQGHCFA 229 (358)
Q Consensus 164 ~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~---~~~~~~~ 229 (358)
............. .......++.++| +++++++... ...|.+|++............ ..+..-+
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p--dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP--DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T--TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECC--CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 6433322211111 1234567889998 8888777644 457999999874422221111 1223334
Q ss_pred eEEEeeeCCEEEEee-CCCeEEEEEcCCCceeeeeeeeecC----c--ccceEEEEeecccceeeeCeEE-EEccCCCcE
Q 038537 230 VLCLVAIEKLIFSGS-EDTTIRVWRRAEGGCYHECLAVLDG----H--RGPVRCLAASLEMEKVVMGFLV-YSSSLDQTF 301 (358)
Q Consensus 230 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~----h--~~~v~~i~~~~~~~~~~~~~~l-~s~~~dg~v 301 (358)
-..++++++++++.. .++.|.++++.......+.+..... . ......|+++|+ |++| ++...++.|
T Consensus 196 h~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd------g~~lyvsnr~~~sI 269 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD------GRFLYVSNRGSNSI 269 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT------SSEEEEEECTTTEE
T ss_pred EEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC------CCEEEEEeccCCEE
Confidence 578888988776654 6788999998822211233332221 1 125788999999 6655 455567789
Q ss_pred EEEEeee
Q 038537 302 KVWRVKV 308 (358)
Q Consensus 302 ~iw~~~~ 308 (358)
.+|++..
T Consensus 270 ~vf~~d~ 276 (345)
T PF10282_consen 270 SVFDLDP 276 (345)
T ss_dssp EEEEECT
T ss_pred EEEEEec
Confidence 9999953
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.23 E-value=1.7e-08 Score=83.24 Aligned_cols=133 Identities=9% Similarity=0.035 Sum_probs=97.6
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEE--EecCCEEEEEeCCc-eEEEEecccccccccccccccCCCceeeeecCCCcc
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAI--LAHDNMLFTTNKDC-KIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQ 85 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i--~~~~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (358)
|...|.+.-.+-.++. +|.+.|.-. ..+++-++.|..|| .+-|+|.++++..+.
T Consensus 341 GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~--------------------- 397 (668)
T COG4946 341 GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI--------------------- 397 (668)
T ss_pred CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe---------------------
Confidence 4455554433333322 455556543 44677899999999 899999998764322
Q ss_pred ccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC----cEEEEE
Q 038537 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG----SVKIWR 161 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~wd 161 (358)
...-+.|.++..+|+|++++.+.....+.+.|++++....+ -+...+-|+.+.|+|++++++-+--+| .|+++|
T Consensus 398 e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i--dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklyd 475 (668)
T COG4946 398 EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI--DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYD 475 (668)
T ss_pred eCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe--cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEe
Confidence 34556799999999999999999999999999999983322 234567899999999999999876655 689999
Q ss_pred ceecC
Q 038537 162 RVYRE 166 (358)
Q Consensus 162 ~~~~~ 166 (358)
+..++
T Consensus 476 m~~~K 480 (668)
T COG4946 476 MDGGK 480 (668)
T ss_pred cCCCe
Confidence 86543
No 272
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.4e-08 Score=88.06 Aligned_cols=201 Identities=11% Similarity=-0.042 Sum_probs=113.8
Q ss_pred CCceEEEEEeCCCCEE---EEEecC--CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-CC----cEE
Q 038537 89 RDCVSCMAFYHAEGLL---YTGSFD--KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DG----SVK 158 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l---~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~ 158 (358)
...+..-.|+|||+.+ ++...+ ..|.+.++.+++...+..+ .+......|+|||+.|+..+. +| .+.
T Consensus 184 ~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~---~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 184 HSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL---QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred CCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC---CCCccceEECCCCCEEEEEECCCCCcceeEE
Confidence 3445667999999752 244333 3688888887764344433 334456899999998886653 23 334
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEee-cCCcEEEEEc--cCCcCCccccceeecccceeEEEee
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS-SDGSINFWEK--DKMSGGFNHGGFLQGHCFAVLCLVA 235 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (358)
.|++..+... ................+|+| +|+.|+..+ .+|...+|.+ ........... ..........++|
T Consensus 261 ~~~~~~g~~g-~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSP 336 (428)
T PRK01029 261 SFSLETGAIG-KPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSP 336 (428)
T ss_pred EeecccCCCC-cceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCccceeECC
Confidence 4666543111 11111111223345678988 998777665 4665555543 32111111110 1111223467899
Q ss_pred eCCEEEEeeCC---CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEE-EccCC--CcEEEEEee
Q 038537 236 IEKLIFSGSED---TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVY-SSSLD--QTFKVWRVK 307 (358)
Q Consensus 236 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~-s~~~d--g~v~iw~~~ 307 (358)
+|+.|+..+.+ ..|.+||+.+++. ..+......+....|+|+ |+.|+ ++..+ ..|.++|+.
T Consensus 337 DG~~Laf~~~~~g~~~I~v~dl~~g~~-----~~Lt~~~~~~~~p~wSpD------G~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 337 DGKKIAFCSVIKGVRQICVYDLATGRD-----YQLTTSPENKESPSWAID------SLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCe-----EEccCCCCCccceEECCC------CCEEEEEECCCCCceEEEEECC
Confidence 99988766533 4699999988843 222222345678899999 66655 44333 456666665
No 273
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=1.2e-09 Score=85.13 Aligned_cols=264 Identities=16% Similarity=0.219 Sum_probs=158.5
Q ss_pred ccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCC--CEE
Q 038537 29 HGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAE--GLL 104 (358)
Q Consensus 29 ~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l 104 (358)
...|+++.++ |.+|++|...|.|.++.-.....-...-...+.... +.+..... -.-...|..+.|..++ ..+
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe--~EFDYLkS-leieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHE--LEFDYLKS-LEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccc--cchhhhhh-ccHHHHhhheeeecCCCcceE
Confidence 4567888885 679999999999999986544311110000000000 00000000 0123457888887644 356
Q ss_pred EEEecCCeEEEEEccCCccccc----------------------------------------c-cccccccCeEEEEEcC
Q 038537 105 YTGSFDKTVKAWRVLDKRCTCV----------------------------------------D-SFVAHESNVNAIVVNQ 143 (358)
Q Consensus 105 ~~~~~dg~i~iwd~~~~~~~~~----------------------------------------~-~~~~~~~~v~~~~~~~ 143 (358)
+..+.|.+|++|.+.....+.+ + .-..|.-.|.++.++.
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 6678899999998854421000 0 0134666788899998
Q ss_pred CCCEEEEEeCCCcEEEEEceecCCcceeeeeeccc-----CCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcc
Q 038537 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQ-----QSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFN 218 (358)
Q Consensus 144 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 218 (358)
|...++++ .|-.|.+|++.-......+. ..+.| ..-|++..|+| ...+.+.-.+..|.|++-|++.......
T Consensus 183 D~et~lSa-DdLrINLWnl~i~D~sFnIV-DiKP~nmeeLteVItSaeFhp-~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 183 DKETLLSA-DDLRINLWNLEIIDGSFNIV-DIKPHNMEELTEVITSAEFHP-EMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred chheeeec-cceeeeeccccccCCceEEE-eccCccHHHHHHHHhhcccCH-hHcceEEEecCCCcEEehhhhhhhhccC
Confidence 88877775 57789999886544333322 12222 34578888998 3456677777889999999995221100
Q ss_pred ----ccce--------eeccccee--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCccc------------
Q 038537 219 ----HGGF--------LQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRG------------ 272 (358)
Q Consensus 219 ----~~~~--------~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~------------ 272 (358)
.... +.+-...+ ..++++|+++++-+. -+|++||.+..+ .++.++.-|..
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k---~pikTi~~h~~l~~~l~d~YEnD 335 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK---NPIKTIPMHCDLMDELNDVYEND 335 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc---CCceeechHHHHHHHHHhhhhcc
Confidence 0001 11111122 456678888888754 579999999875 56666655532
Q ss_pred ce---EEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 273 PV---RCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 273 ~v---~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.| ..+.|+-+ ...+.+|+.....-++-...
T Consensus 336 aifdkFeisfSgd------~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 336 AIFDKFEISFSGD------DKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred ceeeeEEEEecCC------cccccccccccceeeecccc
Confidence 22 34677776 67888888888888876443
No 274
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=1.9e-08 Score=87.12 Aligned_cols=241 Identities=10% Similarity=-0.047 Sum_probs=132.6
Q ss_pred CcEEEEeCCCceeeeeeeecccceE--EEEecCCE---EEEEeCCc--eEEEEecccccccccccccccCCCceeeeecC
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVR--AILAHDNM---LFTTNKDC--KIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSK 81 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~--~i~~~~~~---l~s~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
+.|.+.|...+.... +......+. ..+++|+. +++...+| .|.+.++.+++....
T Consensus 165 ~~l~~~d~dG~~~~~-lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l----------------- 226 (428)
T PRK01029 165 GELWSVDYDGQNLRP-LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI----------------- 226 (428)
T ss_pred ceEEEEcCCCCCceE-cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-----------------
Confidence 467777776554433 322333333 45567654 23444444 577778776643221
Q ss_pred CCccccCCCceEEEEEeCCCCEEEEEec-----CCeEEEEEccCCccccccccc-ccccCeEEEEEcCCCCEEEEEe-CC
Q 038537 82 SNTQQQHRDCVSCMAFYHAEGLLYTGSF-----DKTVKAWRVLDKRCTCVDSFV-AHESNVNAIVVNQDDGFVFTCS-SD 154 (358)
Q Consensus 82 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~d 154 (358)
....+.....+|+|||+.|+..+. +-.+.+|++..+.......+. .........+|+|||+.|+..+ .+
T Consensus 227 ----t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~ 302 (428)
T PRK01029 227 ----LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKD 302 (428)
T ss_pred ----ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCC
Confidence 112233456799999988876543 223444676643111112222 2223446789999999877665 46
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC---CcEEEEEccCCcCCccccceeecccceeE
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD---GSINFWEKDKMSGGFNHGGFLQGHCFAVL 231 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 231 (358)
|...+|.+........ ...+......+....|+| +++.|+..+.+ ..|.+||+.++.... +.. ........
T Consensus 303 g~~~ly~~~~~~~g~~-~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~--~~~~~~~p 376 (428)
T PRK01029 303 GRPRIYIMQIDPEGQS-PRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTT--SPENKESP 376 (428)
T ss_pred CCceEEEEECcccccc-eEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccC--CCCCccce
Confidence 7666665432111111 122223345667888998 89988876543 368999987743211 110 11122335
Q ss_pred EEeeeCCEEEEee---CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecc
Q 038537 232 CLVAIEKLIFSGS---EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 232 ~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
.++|+++.|+... ....|+++|+.+++. + .+....+.+...+|+|.
T Consensus 377 ~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~--~---~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 377 SWAIDSLHLVYSAGNSNESELYLISLITKKT--R---KIVIGSGEKRFPSWGAF 425 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCE--E---EeecCCCcccCceecCC
Confidence 6788998776433 235688899987742 2 22233455667788875
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=7.8e-11 Score=101.63 Aligned_cols=216 Identities=20% Similarity=0.205 Sum_probs=144.2
Q ss_pred ccccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 038537 84 TQQQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRR 162 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 162 (358)
.+.+|...|+.+.|+|.. ..+++++.|-.+..||++.... ++..+..-......++|+-....+++.+....|.+||+
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~-p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~ 187 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR-PFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDL 187 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCc-ceeeeecccccCceeeecccCcchhhhccCCceEEEec
Confidence 347999999999999854 5889999999999999988763 44444444556678899986666666677888999999
Q ss_pred eecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeC--CEE
Q 038537 163 VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE--KLI 240 (358)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l 240 (358)
+.+. .....++.|...+..++|.. .....+.+++.||+|+.||..+......... .......--++-|-| .++
T Consensus 188 r~gs---~pl~s~K~~vs~vn~~~fnr-~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 188 RKGS---TPLCSLKGHVSSVNSIDFNR-FKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred cCCC---cceEEecccceeeehHHHhh-hhhhhhcccCCCCceeeecccccccccceec-cccCcceeccccccCceeEe
Confidence 8665 34556667888888888875 2456788999999999999887432222111 001111111222211 111
Q ss_pred ---------EEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceee----eCeEEEEccCCCcEEEEEee
Q 038537 241 ---------FSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVV----MGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 241 ---------~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~----~~~~l~s~~~dg~v~iw~~~ 307 (358)
..---+.....|+..++ .+++..+.||...|....|-..+.... ....|+|=|.|..+++|-+.
T Consensus 263 mp~~G~n~v~~~~c~n~d~e~n~~~~---~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSDLEWNVFDL---NTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred ccccCCeeeeeccccchhhhhccccC---CcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 11112222334444444 368999999999998887765322111 14579999999999999886
Q ss_pred e
Q 038537 308 V 308 (358)
Q Consensus 308 ~ 308 (358)
+
T Consensus 340 ~ 340 (1081)
T KOG0309|consen 340 S 340 (1081)
T ss_pred H
Confidence 5
No 276
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=2.3e-07 Score=74.23 Aligned_cols=235 Identities=16% Similarity=0.145 Sum_probs=154.4
Q ss_pred CceEEEEecccccc-cccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecC---CeEEEEEccC--C
Q 038537 48 DCKIRIWNFTVSDN-FRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD---KTVKAWRVLD--K 121 (358)
Q Consensus 48 dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~--~ 121 (358)
+.-|.+|++++..- +... .+-.+...++-|+|+|+++.|.++..+ |.|--|.++. +
T Consensus 15 s~gI~v~~ld~~~g~l~~~------------------~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G 76 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL------------------QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDG 76 (346)
T ss_pred CCceEEEEEeCcccccchh------------------hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCC
Confidence 56799999984432 1111 113456668899999999999988554 7788777765 5
Q ss_pred cccccccccccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEceecCCcceeeeeecccCCc----------eeEEEEeec
Q 038537 122 RCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DGSVKIWRRVYRENSHTLTMTLKFQQSS----------VNALALSSF 190 (358)
Q Consensus 122 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~----------i~~~~~~~~ 190 (358)
++..+........+-+.+++++++++++++.. -|.|.++-++........... ..|... +....+.|
T Consensus 77 ~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~-~~h~g~~p~~rQ~~~h~H~a~~tP- 154 (346)
T COG2706 77 RLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV-VKHTGSGPHERQESPHVHSANFTP- 154 (346)
T ss_pred eEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceee-eecCCCCCCccccCCccceeeeCC-
Confidence 54444444333445588999999999888865 588999998765433333222 123332 77888888
Q ss_pred CCCcEEEEeec-CCcEEEEEccCCcCCccccce-eecccceeEEEeeeCCEEEEee-CCCeEEEEEcCCCceeeeeeeee
Q 038537 191 FDNYFLYSGSS-DGSINFWEKDKMSGGFNHGGF-LQGHCFAVLCLVAIEKLIFSGS-EDTTIRVWRRAEGGCYHECLAVL 267 (358)
Q Consensus 191 ~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 267 (358)
+++++++.+. --.|.+|++..+......... ..+...+-+.|+|++++.+..+ -+++|.+|.........+.++.+
T Consensus 155 -~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 155 -DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred -CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence 9988888765 346999999864432222222 3344445688999999887766 68999999988743222333333
Q ss_pred cC------cccceEEEEeecccceeeeCeEEEEccC-CCcEEEEEeeeC
Q 038537 268 DG------HRGPVRCLAASLEMEKVVMGFLVYSSSL-DQTFKVWRVKVM 309 (358)
Q Consensus 268 ~~------h~~~v~~i~~~~~~~~~~~~~~l~s~~~-dg~v~iw~~~~~ 309 (358)
.. -.....+|..+++ |++|.++.. ...|-++.+...
T Consensus 234 ~tlP~dF~g~~~~aaIhis~d------GrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 234 DTLPEDFTGTNWAAAIHISPD------GRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred ccCccccCCCCceeEEEECCC------CCEEEEecCCCCeEEEEEEcCC
Confidence 21 1335678899999 788876642 346777777653
No 277
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=9.8e-09 Score=86.15 Aligned_cols=253 Identities=8% Similarity=0.096 Sum_probs=154.6
Q ss_pred cEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCcccc
Q 038537 10 RIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQ 87 (358)
Q Consensus 10 ~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (358)
.+++|+++++.....+..-...-++..| |.. +++=-..+.+.+|++...+.+.. .-
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEs-l~arlv~nev~f~~~~~f~~~~~---------------------kl 163 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQNGWVPQFSIDES-LAARLVSNEVQFYDLGSFKTIQH---------------------KL 163 (566)
T ss_pred ceeeeeeccceehhheehhhhcCcccccccchh-hhhhhhcceEEEEecCCccceee---------------------ee
Confidence 4778888885555444432222134444 333 22222356799999887433211 33
Q ss_pred CCCceEEEEEeCCC--CEEEE-----EecCCeEEEEEccCCccccccccc-ccccCeEEEEEcCCCCEE-EEEe--C---
Q 038537 88 HRDCVSCMAFYHAE--GLLYT-----GSFDKTVKAWRVLDKRCTCVDSFV-AHESNVNAIVVNQDDGFV-FTCS--S--- 153 (358)
Q Consensus 88 h~~~v~~~~~~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~--~--- 153 (358)
|...|+.+.++|.+ ..+++ .+.-+.|+||.............+ -....=..+.|++-+.-| +.++ -
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 66779999999863 34443 355678999988633211111111 112223457788766532 2222 2
Q ss_pred ------CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEE--eecCCcEEEEEccCCcCCccccceeec
Q 038537 154 ------DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYS--GSSDGSINFWEKDKMSGGFNHGGFLQG 225 (358)
Q Consensus 154 ------dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~ 225 (358)
+.++++.++... .....+ ...++|.++.|+| ++..+++ |-.-.++.|||++. .....+..
T Consensus 244 n~SYYGEq~Lyll~t~g~----s~~V~L-~k~GPVhdv~W~~--s~~EF~VvyGfMPAkvtifnlr~-----~~v~df~e 311 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQGE----SVSVPL-LKEGPVHDVTWSP--SGREFAVVYGFMPAKVTIFNLRG-----KPVFDFPE 311 (566)
T ss_pred CccccccceEEEEEecCc----eEEEec-CCCCCceEEEECC--CCCEEEEEEecccceEEEEcCCC-----CEeEeCCC
Confidence 235777776511 111111 2478999999999 6655544 55677899999986 33333444
Q ss_pred ccceeEEEeeeCCEEEEeeC---CCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccC-----
Q 038537 226 HCFAVLCLVAIEKLIFSGSE---DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSL----- 297 (358)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~----- 297 (358)
......-++|.|++|+.+|- -|.+-+||+.+. +++..+..- .-+-+.|+|+ |++++|+..
T Consensus 312 gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~----K~i~~~~a~--~tt~~eW~Pd------Ge~flTATTaPRlr 379 (566)
T KOG2315|consen 312 GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR----KLIAKFKAA--NTTVFEWSPD------GEYFLTATTAPRLR 379 (566)
T ss_pred CCccceEECCCCCEEEEeecCCCCCceEEEeccch----hhccccccC--CceEEEEcCC------CcEEEEEeccccEE
Confidence 44556678899999988774 488999999986 556665443 3466789999 888887775
Q ss_pred -CCcEEEEEeee
Q 038537 298 -DQTFKVWRVKV 308 (358)
Q Consensus 298 -dg~v~iw~~~~ 308 (358)
|+.++||+..-
T Consensus 380 vdNg~KiwhytG 391 (566)
T KOG2315|consen 380 VDNGIKIWHYTG 391 (566)
T ss_pred ecCCeEEEEecC
Confidence 67899999864
No 278
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.18 E-value=2e-09 Score=81.63 Aligned_cols=217 Identities=12% Similarity=0.124 Sum_probs=120.9
Q ss_pred eeeeeccc-ceEEEEe-cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC
Q 038537 23 GFIKARHG-EVRAILA-HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA 100 (358)
Q Consensus 23 ~~~~~h~~-~v~~i~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 100 (358)
-.+.+|.+ .++.+.+ ....|+++..++.+......+..+......... ..+...+..|.++-.+-+.+-.
T Consensus 29 D~i~~~~d~~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~--------i~~~~~~a~~sep~p~~~~s~~ 100 (319)
T KOG4714|consen 29 DEIMQHADVKLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDG--------IDPFKVLAKNSEIDPNDACTMT 100 (319)
T ss_pred hhcccccceEEEEeechhhheeecccchhheeeeccceEEEechhhcccC--------cCceeeeeccCCCCCccccccc
Confidence 33444443 2444444 355778888888777766554433322111000 0111122233333333333335
Q ss_pred CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-----CCcEEEEEceecCCcceeeeee
Q 038537 101 EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-----DGSVKIWRRVYRENSHTLTMTL 175 (358)
Q Consensus 101 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~ 175 (358)
+..++++..||.+.+.+.+... ............-.+.++...++.+.++.- -+..+.|+++..+ .+....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~-~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~---t~~~~~ 176 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDL-ALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK---TLIPSK 176 (319)
T ss_pred CCceEecCCCceEEEEechHHH-hhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccc---cccccc
Confidence 6679999999999999986521 112222111111222333334554444321 2345556554222 222222
Q ss_pred cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--ee-eCCEEEEeeCCCeEEEE
Q 038537 176 KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VA-IEKLIFSGSEDTTIRVW 252 (358)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~l~~~~~dg~i~iw 252 (358)
+. ...|.+++-+| ....++++|+.||.+-+||.+....+ ...+..|...+..+ +| ++..|+++++||.+..|
T Consensus 177 ~~-~~~v~~l~~hp-~qq~~v~cgt~dg~~~l~d~rn~~~p---~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 177 KA-LDAVTALCSHP-AQQHLVCCGTDDGIVGLWDARNVAMP---VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred cc-cccchhhhCCc-ccccEEEEecCCCeEEEEEcccccch---HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 22 23488999888 34667888999999999999985332 33366777766444 44 57899999999999999
Q ss_pred EcCC
Q 038537 253 RRAE 256 (358)
Q Consensus 253 d~~~ 256 (358)
|..+
T Consensus 252 das~ 255 (319)
T KOG4714|consen 252 DAST 255 (319)
T ss_pred cCCC
Confidence 9885
No 279
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.17 E-value=3.3e-08 Score=79.25 Aligned_cols=223 Identities=10% Similarity=0.051 Sum_probs=134.3
Q ss_pred CCCcEEEEeCCCceeeeeeee---cccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCC
Q 038537 7 SSTRIRVWRQPDCVERGFIKA---RHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSN 83 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~~---h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
.+|.|..||..+++.+..... ....+.....+++.+++++.++.|..||..+++.+........
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~------------- 67 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP------------- 67 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC-------------
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc-------------
Confidence 378999999999999887754 2222222334788888889999999999999987765543111
Q ss_pred ccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccc-ccc--c-cCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038537 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF-VAH--E-SNVNAIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~--~-~~v~~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
.... . ...+..++.++.++.+..+|..+++ .+-.. ... . ...........+..++++..++.|..
T Consensus 68 ----~~~~----~-~~~~~~v~v~~~~~~l~~~d~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 136 (238)
T PF13360_consen 68 ----ISGA----P-VVDGGRVYVGTSDGSLYALDAKTGK--VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVA 136 (238)
T ss_dssp ----GGSG----E-EEETTEEEEEETTSEEEEEETTTSC--EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEE
T ss_pred ----ccce----e-eecccccccccceeeeEecccCCcc--eeeeeccccccccccccccCceEecCEEEEEeccCcEEE
Confidence 0010 1 1244566777788899999998887 33331 111 0 11122223334788888888999999
Q ss_pred EEceecCCcceeeeeecccCCce---eEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEE-Eee
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSV---NALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC-LVA 235 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~ 235 (358)
+|+.+++...............+ ....-.+...+..++.++.++.+..+|+.++..... .. ...... ...
T Consensus 137 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~----~~--~~~~~~~~~~ 210 (238)
T PF13360_consen 137 LDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWS----KP--ISGIYSLPSV 210 (238)
T ss_dssp EETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEE----EC--SS-ECECEEC
T ss_pred EecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEE----ec--CCCccCCcee
Confidence 99987776555433111111111 111111111333777777777544448888542211 11 111222 456
Q ss_pred eCCEEEEeeCCCeEEEEEcCCCce
Q 038537 236 IEKLIFSGSEDTTIRVWRRAEGGC 259 (358)
Q Consensus 236 ~~~~l~~~~~dg~i~iwd~~~~~~ 259 (358)
.+..|+.++.++.|..||+.+++.
T Consensus 211 ~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 211 DGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp CCTEEEEEETTTEEEEEETTTTEE
T ss_pred eCCEEEEEeCCCEEEEEECCCCCE
Confidence 778888888999999999999954
No 280
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.2e-08 Score=85.54 Aligned_cols=260 Identities=10% Similarity=0.057 Sum_probs=165.5
Q ss_pred CcEEEEeCCCceeeeeeeeccc-----ceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCC
Q 038537 9 TRIRVWRQPDCVERGFIKARHG-----EVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSN 83 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~-----~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
..++|||+.+|...+.+..-.+ ++...+++++++|--.. ..|.||+...-.++....
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks----------------- 343 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS----------------- 343 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-----------------
Confidence 5799999999999888877332 33344668888887665 479999987644433222
Q ss_pred ccccCCCceEEEEEeCCCCEEEEEecC-----CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-----
Q 038537 84 TQQQHRDCVSCMAFYHAEGLLYTGSFD-----KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS----- 153 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----- 153 (358)
-....|....|+|.+..||.=... ..+.+..+.+++ .+++..-+.-.=..+.|-.+|.+|+.--.
T Consensus 344 ---lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~--~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~ 418 (698)
T KOG2314|consen 344 ---LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKR--EIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKS 418 (698)
T ss_pred ---cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccc--eeeeccceeeeccEEEeccCCcEEEEEEEeeccc
Confidence 133458889999998887754321 356666666655 44443333322234556667777664321
Q ss_pred -----CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec---CCcEEEEEccCCcCCccccceeec
Q 038537 154 -----DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS---DGSINFWEKDKMSGGFNHGGFLQG 225 (358)
Q Consensus 154 -----dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~ 225 (358)
=..+-|+.++...... ..-.....|...+|-| .|+.+++-+. ..++.+|.+++......+...+..
T Consensus 419 ~~~g~f~n~eIfrireKdIpv----e~velke~vi~FaWEP--~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk 492 (698)
T KOG2314|consen 419 KVKGQFSNLEIFRIREKDIPV----EVVELKESVIAFAWEP--HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK 492 (698)
T ss_pred cccceEeeEEEEEeeccCCCc----eeeecchheeeeeecc--CCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc
Confidence 1134455554332211 1112356778888888 7776665543 357899998865555566666666
Q ss_pred ccceeEEEeeeCCEEEEee---CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCC---
Q 038537 226 HCFAVLCLVAIEKLIFSGS---EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQ--- 299 (358)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg--- 299 (358)
....-+.++|.|++++.+. ..|.+.++|+..... + ......|. .-+.+.|.|. |++++|++.-+
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~--k-~~~~~eh~-~at~veWDPt------GRYvvT~ss~wrhk 562 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADL--K-DTASPEHF-AATEVEWDPT------GRYVVTSSSSWRHK 562 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEecchhhh--h-hccCcccc-ccccceECCC------CCEEEEeeehhhhc
Confidence 6667788899999988765 578899999985321 1 11222343 4588999999 89999988644
Q ss_pred ---cEEEEEee
Q 038537 300 ---TFKVWRVK 307 (358)
Q Consensus 300 ---~v~iw~~~ 307 (358)
--+||+++
T Consensus 563 ~d~GYri~tfq 573 (698)
T KOG2314|consen 563 VDNGYRIFTFQ 573 (698)
T ss_pred cccceEEEEee
Confidence 45677765
No 281
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=8.5e-10 Score=85.85 Aligned_cols=251 Identities=12% Similarity=0.167 Sum_probs=153.3
Q ss_pred CEEeeeCCCcEEEEeCCCce-----eeeeeeeccc------------ceEEEEe----cCCEEEEEeCCceEEEEecccc
Q 038537 1 MVFTGSSSTRIRVWRQPDCV-----ERGFIKARHG------------EVRAILA----HDNMLFTTNKDCKIRIWNFTVS 59 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~-----~~~~~~~h~~------------~v~~i~~----~~~~l~s~~~dg~i~iw~~~~~ 59 (358)
||++|...|.|.++.-.... ....+++|.. .|.++.+ ..+.++..+.|.+|++|.+...
T Consensus 40 YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyek 119 (460)
T COG5170 40 YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEK 119 (460)
T ss_pred eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeecc
Confidence 57888888999999765332 2334566643 4566655 1347777888999999998643
Q ss_pred cc--c--------------------ccccccccCCCceeeeecCCCcc-ccCCCceEEEEEeCCCCEEEEEecCCeEEEE
Q 038537 60 DN--F--------------------RTKKVTTLPRRSSFLSFSKSNTQ-QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAW 116 (358)
Q Consensus 60 ~~--~--------------------~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iw 116 (358)
.. + ....+........++...+.+.. ..|..-|.+++|..+...++++ .|=.|.+|
T Consensus 120 nlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLW 198 (460)
T COG5170 120 NLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINLW 198 (460)
T ss_pred cchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec-cceeeeec
Confidence 11 0 11112222223334444444444 6788899999999888877765 45779999
Q ss_pred EccCCcc-ccccccccc-----ccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceeee------------eecc
Q 038537 117 RVLDKRC-TCVDSFVAH-----ESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLTM------------TLKF 177 (358)
Q Consensus 117 d~~~~~~-~~~~~~~~~-----~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~------------~~~~ 177 (358)
+++-... -.+..++.| ..-|++..|+| ..+.+.-.+..|.|++-|++.......... -+..
T Consensus 199 nl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~e 278 (460)
T COG5170 199 NLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEE 278 (460)
T ss_pred cccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHH
Confidence 8764321 012222222 35688889999 456777788899999999984321111000 1122
Q ss_pred cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceee---------ccccee-----EEEeeeCCEEEEe
Q 038537 178 QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ---------GHCFAV-----LCLVAIEKLIFSG 243 (358)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~~~-----~~~~~~~~~l~~~ 243 (358)
-...|..+.|++ +|+++++-+. -++++||.+..+.+........ -....+ ..++-+...+++|
T Consensus 279 ivsSISD~kFs~--ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sg 355 (460)
T COG5170 279 IVSSISDFKFSD--NGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSG 355 (460)
T ss_pred HhhhhcceEEcC--CCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCccccccc
Confidence 245788899998 8888887654 5899999987554332211000 001111 3444566788888
Q ss_pred eCCCeEEEEEcC
Q 038537 244 SEDTTIRVWRRA 255 (358)
Q Consensus 244 ~~dg~i~iwd~~ 255 (358)
+.....-+|-..
T Consensus 356 sy~NNfgiyp~~ 367 (460)
T COG5170 356 SYSNNFGIYPTD 367 (460)
T ss_pred ccccceeeeccc
Confidence 877777777643
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.14 E-value=6.4e-08 Score=92.51 Aligned_cols=254 Identities=9% Similarity=0.060 Sum_probs=148.0
Q ss_pred CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe-cCCeEEEEE
Q 038537 39 DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS-FDKTVKAWR 117 (358)
Q Consensus 39 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd 117 (358)
+..+++-+.++.|.++|........ ........ . .....-.++-.....+++.++++.|+.+. ..+.|+++|
T Consensus 580 g~lyVaDs~n~rI~v~d~~G~~i~~-ig~~g~~G---~---~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id 652 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTDLDGNFIVQ-IGSTGEEG---L---RDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREID 652 (1057)
T ss_pred CeEEEEECCCCeEEEEeCCCCEEEE-EccCCCcC---C---CCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEe
Confidence 4466666778889999976432211 11000000 0 00000012233468899999888666654 457899999
Q ss_pred ccCCccccccc-------cccc-------ccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceeee-----eec-
Q 038537 118 VLDKRCTCVDS-------FVAH-------ESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLTM-----TLK- 176 (358)
Q Consensus 118 ~~~~~~~~~~~-------~~~~-------~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-----~~~- 176 (358)
..++....+.. +.+. -.....++++| ++..+++.+.++.|++||...+... .+.. ...
T Consensus 653 ~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g 731 (1057)
T PLN02919 653 FVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNG 731 (1057)
T ss_pred cCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCC
Confidence 87665211110 0000 11346799999 5666677778899999997544211 0000 000
Q ss_pred -----ccCCceeEEEEeecCCCc-EEEEeecCCcEEEEEccCCcCCcc---------cccee-----------eccccee
Q 038537 177 -----FQQSSVNALALSSFFDNY-FLYSGSSDGSINFWEKDKMSGGFN---------HGGFL-----------QGHCFAV 230 (358)
Q Consensus 177 -----~~~~~i~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~---------~~~~~-----------~~~~~~~ 230 (358)
..-.....++++| ++. ++++-+.++.|++||+.+...... ....+ ..++ .-
T Consensus 732 ~~~~~~~~~~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P-~G 808 (1057)
T PLN02919 732 SSGTSTSFAQPSGISLSP--DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP-LG 808 (1057)
T ss_pred CccccccccCccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC-ce
Confidence 0113456789998 776 555666679999999876321100 00000 0111 12
Q ss_pred EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeee----------ecCcccceEEEEeecccceeeeCeEEEEccCCCc
Q 038537 231 LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAV----------LDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQT 300 (358)
Q Consensus 231 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~ 300 (358)
.+++++|+++++-..++.|++||..++.... .... ..+.-....+|+++++ |+++++-+.++.
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~~G~~dG~~~~a~l~~P~GIavd~d------G~lyVaDt~Nn~ 881 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGKAGFKDGKALKAQLSEPAGLALGEN------GRLFVADTNNSL 881 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCCcCCCCCcccccccCCceEEEEeCC------CCEEEEECCCCE
Confidence 4567788888888899999999998763210 0000 1112235678999999 889999999999
Q ss_pred EEEEEeeeCC
Q 038537 301 FKVWRVKVMP 310 (358)
Q Consensus 301 v~iw~~~~~~ 310 (358)
|++||+....
T Consensus 882 Irvid~~~~~ 891 (1057)
T PLN02919 882 IRYLDLNKGE 891 (1057)
T ss_pred EEEEECCCCc
Confidence 9999997643
No 283
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.12 E-value=7.9e-08 Score=83.02 Aligned_cols=266 Identities=8% Similarity=-0.019 Sum_probs=155.4
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeeccc----------ce-EEEEecCCEEEEEeCCceEEEEeccccccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHG----------EV-RAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~----------~v-~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 70 (358)
|++++.+|.|.-+|..+++.+........ .+ ......++.++.++.+|.+..+|..+++..+.......
T Consensus 72 vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 151 (394)
T PRK11138 72 VYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE 151 (394)
T ss_pred EEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCCc
Confidence 56677889999999999987766543220 11 12344677888888999999999999998876543210
Q ss_pred CCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEE--EEcC--CCC
Q 038537 71 PRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI--VVNQ--DDG 146 (358)
Q Consensus 71 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~--~~~~--~~~ 146 (358)
....+ .. .+..++.++.++.+.-+|..+++ .+-..... .+...+ .-+| .+.
T Consensus 152 ----------------~~ssP----~v--~~~~v~v~~~~g~l~ald~~tG~--~~W~~~~~-~~~~~~~~~~sP~v~~~ 206 (394)
T PRK11138 152 ----------------ALSRP----VV--SDGLVLVHTSNGMLQALNESDGA--VKWTVNLD-VPSLTLRGESAPATAFG 206 (394)
T ss_pred ----------------eecCC----EE--ECCEEEEECCCCEEEEEEccCCC--EeeeecCC-CCcccccCCCCCEEECC
Confidence 01111 11 23456677888999999999887 33222211 110000 0011 234
Q ss_pred EEEEEeCCCcEEEEEceecCCcceeeeeecccCC---ceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccccee
Q 038537 147 FVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQS---SVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFL 223 (358)
Q Consensus 147 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 223 (358)
.++.++.+|.+..+|..+++..++.......... ....+..+|.-.+..++.++.+|.+..+|..+++...... .
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~--~ 284 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE--Y 284 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec--C
Confidence 5777788999999998887765543221100000 0111111221135567777789999999998865433321 1
Q ss_pred ecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 224 QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
+. ...+...+..++.++.+|.+..+|..+++..++... + .+ ....+.... +..|+.++.||.|.+
T Consensus 285 -~~---~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~-~~-~~~~sp~v~--------~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 285 -GS---VNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSD-L-LH-RLLTAPVLY--------NGYLVVGDSEGYLHW 349 (394)
T ss_pred -CC---ccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccc-c-CC-CcccCCEEE--------CCEEEEEeCCCEEEE
Confidence 11 112334677888888999999999999854332111 1 11 111112222 346778889999999
Q ss_pred EEeeeC
Q 038537 304 WRVKVM 309 (358)
Q Consensus 304 w~~~~~ 309 (358)
.|..+.
T Consensus 350 ld~~tG 355 (394)
T PRK11138 350 INREDG 355 (394)
T ss_pred EECCCC
Confidence 887653
No 284
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=4.2e-08 Score=85.77 Aligned_cols=188 Identities=9% Similarity=0.102 Sum_probs=125.9
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe-----cC-CEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA-----HD-NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~-----~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
+||++...|.|.+||...+..+..+..|..++..+.| +. ..|++-....+|.+|+..+++.++....
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y------- 153 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY------- 153 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc-------
Confidence 4788888999999999999999999999999998877 22 4677777788999999999988775432
Q ss_pred eeeeecCCCccccCCCceEEEEEeC-CCCEEEEEecCCeEEEEEccCCcc-----ccccccccccc--------------
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYH-AEGLLYTGSFDKTVKAWRVLDKRC-----TCVDSFVAHES-------------- 134 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~-------------- 134 (358)
......|+.+.| +.+.+..-+..|.+.+-+.-.... +..+.-..|.+
T Consensus 154 -------------s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ 220 (1062)
T KOG1912|consen 154 -------------SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNST 220 (1062)
T ss_pred -------------CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccc
Confidence 223356677777 444555445556555554421110 00000001110
Q ss_pred --C---------eEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC
Q 038537 135 --N---------VNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203 (358)
Q Consensus 135 --~---------v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg 203 (358)
. ...++|+|.-+.++.......+.++|++..... .......+.+.-+.+.|.+....|++...||
T Consensus 221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l----~vvpier~~akfv~vlP~~~rd~LfclH~nG 296 (1062)
T KOG1912|consen 221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCL----AVVPIERGGAKFVDVLPDPRRDALFCLHSNG 296 (1062)
T ss_pred cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhcee----EEEEeccCCcceeEeccCCCcceEEEEecCC
Confidence 0 112467886666666667888999999644433 2333346677778888877888999999999
Q ss_pred cEEEEEccC
Q 038537 204 SINFWEKDK 212 (358)
Q Consensus 204 ~i~i~d~~~ 212 (358)
.+.+|-.+.
T Consensus 297 ~ltirvrk~ 305 (1062)
T KOG1912|consen 297 RLTIRVRKE 305 (1062)
T ss_pred eEEEEEeec
Confidence 999985443
No 285
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.08 E-value=4.6e-09 Score=84.53 Aligned_cols=160 Identities=19% Similarity=0.203 Sum_probs=109.8
Q ss_pred eEEEEEeCCCCEEEEEecCCeEEEEEccCCc--ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcc
Q 038537 92 VSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR--CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSH 169 (358)
Q Consensus 92 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 169 (358)
...+..++.++++|.+..+....++++.... .+..... .-...-+++.+..+......+..-|.++-+|+..... .
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-G 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecccc-c
Confidence 3445667888899988888887777776543 1112111 1223344555555556666666666666555543221 1
Q ss_pred eeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee-eCCEEEEeeCCCe
Q 038537 170 TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA-IEKLIFSGSEDTT 248 (358)
Q Consensus 170 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~ 248 (358)
.....-+|-+.+..++++| |+.+++++..|..|++-.... .+.......||..-|..++- ++..|++|+.|++
T Consensus 143 -~~~~~lGhvSml~dVavS~--D~~~IitaDRDEkIRvs~ypa---~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~t 216 (390)
T KOG3914|consen 143 -RCEPILGHVSMLLDVAVSP--DDQFIITADRDEKIRVSRYPA---TFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKT 216 (390)
T ss_pred -CcchhhhhhhhhheeeecC--CCCEEEEecCCceEEEEecCc---ccchhhhccccHhheeeeeeccCceeeecCCCCc
Confidence 1233456889999999999 999999999999999977654 23444456788888877775 4566799999999
Q ss_pred EEEEEcCCCce
Q 038537 249 IRVWRRAEGGC 259 (358)
Q Consensus 249 i~iwd~~~~~~ 259 (358)
|++||+.+++.
T Consensus 217 lr~Wd~~sgk~ 227 (390)
T KOG3914|consen 217 LRLWDITSGKL 227 (390)
T ss_pred EEEEecccCCc
Confidence 99999999864
No 286
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.08 E-value=2.9e-07 Score=86.53 Aligned_cols=241 Identities=11% Similarity=0.068 Sum_probs=147.0
Q ss_pred cceEEEEe--cCCEEEEEeCCceEEEE----ecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCE
Q 038537 30 GEVRAILA--HDNMLFTTNKDCKIRIW----NFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGL 103 (358)
Q Consensus 30 ~~v~~i~~--~~~~l~s~~~dg~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 103 (358)
+.|.++.+ +.+.++.+..+|.|.+. +....... ....-...|.+++||||+..
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E---------------------~VG~vd~GI~a~~WSPD~El 134 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE---------------------IVGSVDSGILAASWSPDEEL 134 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE---------------------EEEEEcCcEEEEEECCCcCE
Confidence 45666655 56678888889999998 33322211 11234567999999999999
Q ss_pred EEEEecCCeEEEEEccC-------------Cccc--------ccccccc------------------------cccCeEE
Q 038537 104 LYTGSFDKTVKAWRVLD-------------KRCT--------CVDSFVA------------------------HESNVNA 138 (358)
Q Consensus 104 l~~~~~dg~i~iwd~~~-------------~~~~--------~~~~~~~------------------------~~~~v~~ 138 (358)
|+..+.++++.+.+-.- +..+ ....|.+ ....-..
T Consensus 135 la~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ 214 (928)
T PF04762_consen 135 LALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVR 214 (928)
T ss_pred EEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceE
Confidence 99999999888764210 0000 0000100 2334567
Q ss_pred EEEcCCCCEEEEEeC---C---CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec---CCcEEEEE
Q 038537 139 IVVNQDDGFVFTCSS---D---GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS---DGSINFWE 209 (358)
Q Consensus 139 ~~~~~~~~~l~~~~~---d---g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~i~i~d 209 (358)
|+|-.||.++++.+. . ..++||+-+ ..+....+.-.+--.+++|.| .|++|++... ...|.+|.
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-----G~L~stSE~v~gLe~~l~WrP--sG~lIA~~q~~~~~~~VvFfE 287 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-----GELQSTSEPVDGLEGALSWRP--SGNLIASSQRLPDRHDVVFFE 287 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-----ceEEeccccCCCccCCccCCC--CCCEEEEEEEcCCCcEEEEEe
Confidence 899999999998875 2 478899842 233333333344456788998 8999988765 34577777
Q ss_pred ccCCcCCccccceeeccccee--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceee
Q 038537 210 KDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVV 287 (358)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~ 287 (358)
-+.... ..+..........+ +.++.++..||....|. |.+|-..+-....+....+.. ...+..+.|+|..+
T Consensus 288 rNGLrh-geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~~~~~~~Wdpe~p--- 361 (928)
T PF04762_consen 288 RNGLRH-GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SESVNFVKWDPEKP--- 361 (928)
T ss_pred cCCcEe-eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CCCCCceEECCCCC---
Confidence 554221 11111111223344 45556788999877665 999998887543333333322 23455699999865
Q ss_pred eCeEEEEccCCCcEEEEEe
Q 038537 288 MGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 288 ~~~~l~s~~~dg~v~iw~~ 306 (358)
..|...+.+|.+..++.
T Consensus 362 --~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 362 --LRLHVLTSNGQYEIYDF 378 (928)
T ss_pred --CEEEEEecCCcEEEEEE
Confidence 44555555566655443
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.07 E-value=8.5e-09 Score=83.04 Aligned_cols=161 Identities=14% Similarity=0.192 Sum_probs=107.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCc
Q 038537 135 NVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMS 214 (358)
Q Consensus 135 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 214 (358)
....+..++.+++++++..+....+++.+......++..... -....+++.+.. +......+..-|.++-+|+-...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~--~~~sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIR--EDTSVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeee--ccceEEEEeecCCceeeeeeccc
Confidence 344556778889999998888888888876554333332222 123334455544 44455555555555555544322
Q ss_pred CCccccceeeccccee--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeee-eecCcccceEEEEeecccceeeeCeE
Q 038537 215 GGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLA-VLDGHRGPVRCLAASLEMEKVVMGFL 291 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~h~~~v~~i~~~~~~~~~~~~~~ 291 (358)
. .......+|...+ +.+++|+++|+++..|+.|++-..... -.+. -.-||+.-|..++.-++ +.
T Consensus 141 ~--~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~----f~IesfclGH~eFVS~isl~~~-------~~ 207 (390)
T KOG3914|consen 141 S--GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT----FVIESFCLGHKEFVSTISLTDN-------YL 207 (390)
T ss_pred c--cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc----cchhhhccccHhheeeeeeccC-------ce
Confidence 1 1222355776666 556789999999999999999877654 2222 23479999999999986 67
Q ss_pred EEEccCCCcEEEEEeeeCCC
Q 038537 292 VYSSSLDQTFKVWRVKVMPD 311 (358)
Q Consensus 292 l~s~~~dg~v~iw~~~~~~~ 311 (358)
|+|+|.|++|++||+.+.+.
T Consensus 208 LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 208 LLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred eeecCCCCcEEEEecccCCc
Confidence 99999999999999996443
No 288
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.05 E-value=7.8e-08 Score=84.11 Aligned_cols=247 Identities=11% Similarity=0.094 Sum_probs=165.7
Q ss_pred eEEEEecC-CEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC----------
Q 038537 32 VRAILAHD-NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA---------- 100 (358)
Q Consensus 32 v~~i~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---------- 100 (358)
-.++.++. +.++-|+ ...|.+-|..+.+.+. .+..|...|+.+.|.|.
T Consensus 18 ~~A~Dw~~~GLiAygs-hslV~VVDs~s~q~iq--------------------sie~h~s~V~~VrWap~~~p~~llS~~ 76 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGS-HSLVSVVDSRSLQLIQ--------------------SIELHQSAVTSVRWAPAPSPRDLLSPS 76 (1062)
T ss_pred ccccccCccceEEEec-CceEEEEehhhhhhhh--------------------ccccCccceeEEEeccCCCchhccCcc
Confidence 34555554 4555554 4578888887766654 34568889999999763
Q ss_pred --CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC---CC-CEEEEEeCCCcEEEEEceecCCcceeeee
Q 038537 101 --EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ---DD-GFVFTCSSDGSVKIWRRVYRENSHTLTMT 174 (358)
Q Consensus 101 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 174 (358)
.-.|+++...|.|.+||..... .+..+..|.+++..++|-+ +. ..|++-.....+.+|+..+++..++..
T Consensus 77 ~~~lliAsaD~~GrIil~d~~~~s--~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-- 152 (1062)
T KOG1912|consen 77 SSQLLIASADISGRIILVDFVLAS--VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-- 152 (1062)
T ss_pred ccceeEEeccccCcEEEEEehhhh--hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc--
Confidence 1257788888999999999887 6777888999999999976 33 467777788899999998887655443
Q ss_pred ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccc---cceeecccc-------------------e---
Q 038537 175 LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH---GGFLQGHCF-------------------A--- 229 (358)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~-------------------~--- 229 (358)
.......|+.+.| ++...+..-+..|.+.+-+.-..+..... ......|.. .
T Consensus 153 --ys~~iLs~f~~DP-fd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~f 229 (1062)
T KOG1912|consen 153 --YSHEILSCFRVDP-FDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYF 229 (1062)
T ss_pred --cCCcceeeeeeCC-CCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhH
Confidence 3455677788988 56677777777777777664432211111 000011110 0
Q ss_pred -----eEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEE
Q 038537 230 -----VLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304 (358)
Q Consensus 230 -----~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw 304 (358)
-.+++|.-+.++-......+.++|++-. .++....-..+.+.-+.+-|+.+ ...|.+.-.||.+.+|
T Consensus 230 ity~a~faf~p~~rn~lfi~~prellv~dle~~----~~l~vvpier~~akfv~vlP~~~----rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 230 ITYCAQFAFSPHWRNILFITFPRELLVFDLEYE----CCLAVVPIERGGAKFVDVLPDPR----RDALFCLHSNGRLTIR 301 (1062)
T ss_pred HHHHHhhhcChhhhceEEEEeccceEEEcchhh----ceeEEEEeccCCcceeEeccCCC----cceEEEEecCCeEEEE
Confidence 0233444333333445667999999877 45655555566666778888765 6789999999999999
Q ss_pred EeeeCCCCcc
Q 038537 305 RVKVMPDQEK 314 (358)
Q Consensus 305 ~~~~~~~~~~ 314 (358)
--+..+...+
T Consensus 302 vrk~~~~~f~ 311 (1062)
T KOG1912|consen 302 VRKEEPTEFK 311 (1062)
T ss_pred EeeccCcccc
Confidence 8876554433
No 289
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=7.6e-09 Score=84.58 Aligned_cols=236 Identities=12% Similarity=0.087 Sum_probs=160.2
Q ss_pred CEEeeeCCCcEEEEeCCC---ceeeeeeeecccceEEE--EecCCEEEEEeC-CceEEEEecccccccccccccccCCCc
Q 038537 1 MVFTGSSSTRIRVWRQPD---CVERGFIKARHGEVRAI--LAHDNMLFTTNK-DCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~---~~~~~~~~~h~~~v~~i--~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
++.+++.||.++.|.-.. -+.+..+..|.+.|.++ +.++-.+.|.+. |..++++|+.+-..+...++..+|...
T Consensus 22 fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a 101 (558)
T KOG0882|consen 22 FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA 101 (558)
T ss_pred eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCce
Confidence 478999999999997543 34456667788887766 457778888777 999999999987766555554443221
Q ss_pred eeeeecCCCccccCCCceEEEEEeCCC--CEEE-EEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEE
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHAE--GLLY-TGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC 151 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 151 (358)
.+ ..++.. ..|+ +.-.++.+.++|-....++....-.-|..+|.++.+++-+..+++.
T Consensus 102 ~w-------------------v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 102 EW-------------------VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred EE-------------------ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 11 111111 1233 3345689999998766544555556799999999999999999999
Q ss_pred eCCCcEEEEEceec------CCcc-----eeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccc
Q 038537 152 SSDGSVKIWRRVYR------ENSH-----TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG 220 (358)
Q Consensus 152 ~~dg~i~~wd~~~~------~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 220 (358)
...|.|..|..... .... .....+........++.++| ++..+.+-+.|..|++++.+++.......
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp--~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP--DGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc--ccCcccccCcccEEEEEEeccchhhhhhh
Confidence 99999999987521 0000 11112223456788999998 99999999999999999988753221111
Q ss_pred c----------------------------eeeccc---ceeEEEeeeCCEEEEeeCCCeEEEEEcCCCc
Q 038537 221 G----------------------------FLQGHC---FAVLCLVAIEKLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 221 ~----------------------------~~~~~~---~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 258 (358)
. .+..|. ..-.++.-.+++|+-|+.=| |++.++.++.
T Consensus 241 E~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 241 EVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred ccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence 0 011111 12245566788999888776 8888888874
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.04 E-value=1.2e-09 Score=94.51 Aligned_cols=207 Identities=15% Similarity=0.144 Sum_probs=145.2
Q ss_pred CCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccc--cCeEEEEEcCC--CCEEEEEeCCCcEEEEEcee
Q 038537 89 RDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHE--SNVNAIVVNQD--DGFVFTCSSDGSVKIWRRVY 164 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~ 164 (358)
.+++..+..+|.|+-++.++.-| +.+.|+...-. +...+ .|. -.|-.+.|+|. ..+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~-ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFT-PPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCC-Cceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 45678899999999999988877 55667655331 22222 222 24667788874 34566666667778899865
Q ss_pred cCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEee
Q 038537 165 RENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGS 244 (358)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 244 (358)
.. ...+...+.+|...|+.+.|.| .....+++++.|-.+..||+++........... .....-+.+......+.+.+
T Consensus 101 ss-~~aIef~lhghsraitd~n~~~-q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w-~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 101 SS-SNAIEFVLHGHSRAITDINFNP-QHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW-RSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred CC-ccceEEEEecCccceeccccCC-CCCcceeeccccccceeeeccCCCcceeeeecc-cccCceeeecccCcchhhhc
Confidence 43 3344556678999999999998 467899999999999999999854333221111 11222344444334444445
Q ss_pred CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 245 EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
....|++||.+.+. .++..+++|...|+.+.|..-. ...+.+++.||+|++||.+..
T Consensus 178 hg~~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~-----~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFK-----YSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred cCCceEEEeccCCC---cceEEecccceeeehHHHhhhh-----hhhhcccCCCCceeeeccccc
Confidence 66779999999986 6888999999999999998653 247889999999999998764
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.03 E-value=1e-06 Score=82.92 Aligned_cols=289 Identities=9% Similarity=0.050 Sum_probs=165.3
Q ss_pred EEeeeCCCcEEEE----eCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEeccccccccccccc-------
Q 038537 2 VFTGSSSTRIRVW----RQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVT------- 68 (358)
Q Consensus 2 l~tg~~dg~v~vw----~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~------- 68 (358)
|+.+..+|.|.+. +..+.. +.....-...|.+++| |+..|+.+..+|++.+-+-+ -+.+....+.
T Consensus 90 l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~ 167 (928)
T PF04762_consen 90 LCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGES 167 (928)
T ss_pred EEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCC
Confidence 5667788888888 443332 2333344668888877 56788888888888776432 1111111110
Q ss_pred ------------ccCCCcee----------eeecCCCccccCCCceEEEEEeCCCCEEEEEec---C---CeEEEEEccC
Q 038537 69 ------------TLPRRSSF----------LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF---D---KTVKAWRVLD 120 (358)
Q Consensus 69 ------------~~~~~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---d---g~i~iwd~~~ 120 (358)
.+..+..- ........+. +.+.-..++|-.||.++|+.+. . ..++||+-+
T Consensus 168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re- 245 (928)
T PF04762_consen 168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE- 245 (928)
T ss_pred ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-
Confidence 00000000 0000011223 5556788999999999998765 2 478999865
Q ss_pred CcccccccccccccCeEEEEEcCCCCEEEEEeC---CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEE
Q 038537 121 KRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS---DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLY 197 (358)
Q Consensus 121 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 197 (358)
+. ...+-..-.+--.+++|.|.|++|++... ...|.+|.- +|-.-.++..........|..+.|++ ++..|+
T Consensus 246 G~--L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~--ds~iLA 320 (928)
T PF04762_consen 246 GE--LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNS--DSEILA 320 (928)
T ss_pred ce--EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECC--CCCEEE
Confidence 44 22222222333457899999999988865 345666653 33333344444444567899999998 999999
Q ss_pred EeecCCcEEEEEccCCcCCccccceeec--c-cceeEEEee-eCCEEEEeeCCCeEEEEEcC----CCc-----------
Q 038537 198 SGSSDGSINFWEKDKMSGGFNHGGFLQG--H-CFAVLCLVA-IEKLIFSGSEDTTIRVWRRA----EGG----------- 258 (358)
Q Consensus 198 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~-~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~----~~~----------- 258 (358)
..-.|. |.+|-..+-. +-+...+.- . ......+++ ++..|...+.+|.+..++.. .+.
T Consensus 321 v~~~~~-vqLWt~~NYH--WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~va 397 (928)
T PF04762_consen 321 VWLEDR-VQLWTRSNYH--WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVA 397 (928)
T ss_pred EEecCC-ceEEEeeCCE--EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEE
Confidence 977665 9999877621 122221211 1 111244444 23445555555555444321 110
Q ss_pred ----------------eee-eeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 259 ----------------CYH-ECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 259 ----------------~~~-~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
.+. -....+ .-..+|.+++|+++ +..+++-..||.|.+|.....
T Consensus 398 VIDG~~lllTpf~~a~VPPPMs~~~l-~~~~~v~~vaf~~~------~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 398 VIDGNKLLLTPFRRAVVPPPMSSYEL-ELPSPVNDVAFSPS------NSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred EEeCCeEEEecccccCCCchHhceEE-cCCCCcEEEEEeCC------CCeEEEEECCCCEEEEEecCC
Confidence 000 000111 13468999999998 556888889999999996543
No 292
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=2.6e-07 Score=77.82 Aligned_cols=234 Identities=9% Similarity=0.096 Sum_probs=147.2
Q ss_pred CCcEEEEeCCCceeeeeeeecccceEEEEecC----CEEEE-----EeCCceEEEEecccccccccccccccCCCceeee
Q 038537 8 STRIRVWRQPDCVERGFIKARHGEVRAILAHD----NMLFT-----TNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~----~~l~s-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
.+.|.+|++.+.+.+ .-+-|...|..+.... ..+|+ .|.-+.++||...............+
T Consensus 145 ~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF-------- 215 (566)
T KOG2315|consen 145 SNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF-------- 215 (566)
T ss_pred cceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc--------
Confidence 467888888764332 2233556666665532 24443 35667899998873322211111111
Q ss_pred ecCCCccccCCCceEEEEEeCCCC-EE--EEEecC---------CeEEEEEccCCcccccccccccccCeEEEEEcCCCC
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEG-LL--YTGSFD---------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDG 146 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~-~l--~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 146 (358)
....=-.+.|++-|. +| ++..-| .++++.++.... ....+ ...++|.++.|+|+++
T Consensus 216 ---------Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s--~~V~L-~k~GPVhdv~W~~s~~ 283 (566)
T KOG2315|consen 216 ---------FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES--VSVPL-LKEGPVHDVTWSPSGR 283 (566)
T ss_pred ---------cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce--EEEec-CCCCCceEEEECCCCC
Confidence 111123466776554 22 222223 367888877333 33333 3478999999999998
Q ss_pred EEEEEe--CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec---CCcEEEEEccCCcCCccccc
Q 038537 147 FVFTCS--SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS---DGSINFWEKDKMSGGFNHGG 221 (358)
Q Consensus 147 ~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~ 221 (358)
.++++. .-..+.+||++-. ..+....++-+++-|+| .|++++.++- -|.+-+||..+ .+...
T Consensus 284 EF~VvyGfMPAkvtifnlr~~-------~v~df~egpRN~~~fnp--~g~ii~lAGFGNL~G~mEvwDv~n----~K~i~ 350 (566)
T KOG2315|consen 284 EFAVVYGFMPAKVTIFNLRGK-------PVFDFPEGPRNTAFFNP--HGNIILLAGFGNLPGDMEVWDVPN----RKLIA 350 (566)
T ss_pred EEEEEEecccceEEEEcCCCC-------EeEeCCCCCccceEECC--CCCEEEEeecCCCCCceEEEeccc----hhhcc
Confidence 776654 4668999997421 22333567888999999 8999888776 47899999988 44555
Q ss_pred eeecccceeEEEeeeCCEEEEee------CCCeEEEEEcCCCceeeeeeeeecCccc-ceEEEEeecc
Q 038537 222 FLQGHCFAVLCLVAIEKLIFSGS------EDTTIRVWRRAEGGCYHECLAVLDGHRG-PVRCLAASLE 282 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~h~~-~v~~i~~~~~ 282 (358)
.+......+..++|+|.+|+|++ .|+.++||+..... +.. .+-. ....+.|-|-
T Consensus 351 ~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~-----l~~--~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 351 KFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL-----LHE--KMFKSELLQVEWRPF 411 (566)
T ss_pred ccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce-----eeh--hhhhHhHhheeeeec
Confidence 56677778899999999999887 36779999987541 211 1112 4677777765
No 293
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.02 E-value=1.4e-06 Score=67.73 Aligned_cols=194 Identities=9% Similarity=0.115 Sum_probs=114.3
Q ss_pred eEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccc---cc-cccccCeEEEEEcCC------CCEEEEEeCCCcEEEEE
Q 038537 92 VSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVD---SF-VAHESNVNAIVVNQD------DGFVFTCSSDGSVKIWR 161 (358)
Q Consensus 92 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~-~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~~wd 161 (358)
-..++|+||+.+||.+...|+|+++|+.....-.+. .+ ..-..+|..+.|.+. ...|++-..+|.++-|-
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 577999999999999999999999999764421111 01 112356777777652 23577778889998887
Q ss_pred ceecC-Ccceeeee--ec-ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee--
Q 038537 162 RVYRE-NSHTLTMT--LK-FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA-- 235 (358)
Q Consensus 162 ~~~~~-~~~~~~~~--~~-~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-- 235 (358)
+..+. ........ +. .....|.++.++| ..++|++|+.... ++. ........++++-.
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p--~h~LLlVgG~~~~------~~~--------~s~a~~~GLtaWRiL~ 189 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHP--KHRLLLVGGCEQN------QDG--------MSKASSCGLTAWRILS 189 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcC--CCCEEEEeccCCC------CCc--------cccccccCceEEEEcC
Confidence 64332 11222222 22 2467899999998 7777777765332 000 00111122222221
Q ss_pred -eCCEE-EEeeCCCe------EEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 236 -IEKLI-FSGSEDTT------IRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 236 -~~~~l-~~~~~dg~------i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
.+-+. ++..+|+. -.+|.+-+. +...........|..|..+|+ |.+||+...+|.|.+|++.
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~----~~fs~~~~~~d~i~kmSlSPd------g~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPSF----KFFSRQGQEQDGIFKMSLSPD------GSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred CCCcEEEccccCccccccccccceeeccce----eeeeccccCCCceEEEEECCC------CCEEEEEEcCCeEEEEecC
Confidence 11111 12222221 123333322 111111234568999999999 8999999999999999998
Q ss_pred eCCC
Q 038537 308 VMPD 311 (358)
Q Consensus 308 ~~~~ 311 (358)
....
T Consensus 260 sL~~ 263 (282)
T PF15492_consen 260 SLRL 263 (282)
T ss_pred cchh
Confidence 7543
No 294
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.00 E-value=1.6e-06 Score=71.95 Aligned_cols=226 Identities=10% Similarity=0.069 Sum_probs=130.0
Q ss_pred CCCcEEEEeCCCceeeeeeeeccc---------ceEEEEecCCEEEEEe-C-CceEEEEecccccccccccccccCCCce
Q 038537 7 SSTRIRVWRQPDCVERGFIKARHG---------EVRAILAHDNMLFTTN-K-DCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~~h~~---------~v~~i~~~~~~l~s~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
.+..|.+||..+.+.+..+..... ...+++.+|++|+... . +..|.+.|+.+++.+....... ...
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~---~~~ 151 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD---CYH 151 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC---CcE
Confidence 578999999999999888764322 2567788999888776 3 7899999999988776544311 111
Q ss_pred eeeecCCCccccCCCceEEEEEeCCCCEEE-EEecCCeEEEEEccCCcccccccccc-----cccCeEEEEEcC-CCCEE
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLY-TGSFDKTVKAWRVLDKRCTCVDSFVA-----HESNVNAIVVNQ-DDGFV 148 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l 148 (358)
.+. ...-..+..+.|+..+. +-..+|+...=+ ...+.. ...+ .|.+ ++.++
T Consensus 152 vy~----------t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~--------~~vf~~~~~~v~~rP----~~~~~dg~~~ 209 (352)
T TIGR02658 152 IFP----------TANDTFFMHCRDGSLAKVGYGTKGNPKIKP--------TEVFHPEDEYLINHP----AYSNKSGRLV 209 (352)
T ss_pred EEE----------ecCCccEEEeecCceEEEEecCCCceEEee--------eeeecCCccccccCC----ceEcCCCcEE
Confidence 100 00011112223333322 112223321100 000100 0122 3455 77777
Q ss_pred EEEeCCCcEEEEEceecCCcceee-eee-------cccCCceeEEEEeecCCCcEEEEee----------cCCcEEEEEc
Q 038537 149 FTCSSDGSVKIWRRVYRENSHTLT-MTL-------KFQQSSVNALALSSFFDNYFLYSGS----------SDGSINFWEK 210 (358)
Q Consensus 149 ~~~~~dg~i~~wd~~~~~~~~~~~-~~~-------~~~~~~i~~~~~~~~~~~~~l~~~~----------~dg~i~i~d~ 210 (358)
.+..+ |.|.+.|+.......... ... .-....+.-+++++ +++.+++.. ..+.|.++|.
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~--dg~~lyV~~~~~~~~thk~~~~~V~ViD~ 286 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR--ARDRIYLLADQRAKWTHKTASRFLFVVDA 286 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC--CCCEEEEEecCCccccccCCCCEEEEEEC
Confidence 77666 999999964432211111 111 11233444588988 777777743 1247999998
Q ss_pred cCCcCCccccceeecccceeEEEeeeCC-EEEEee-CCCeEEEEEcCCCceeeeeeeee
Q 038537 211 DKMSGGFNHGGFLQGHCFAVLCLVAIEK-LIFSGS-EDTTIRVWRRAEGGCYHECLAVL 267 (358)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 267 (358)
.+.+.... ...++...-..++++++ +|++.. .++.|.++|..++ +.+..+
T Consensus 287 ~t~kvi~~---i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~----k~i~~i 338 (352)
T TIGR02658 287 KTGKRLRK---IELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG----KELSSV 338 (352)
T ss_pred CCCeEEEE---EeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC----eEEeee
Confidence 87432222 13355556678899988 777665 6788999999998 445544
No 295
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.00 E-value=6.4e-07 Score=85.89 Aligned_cols=249 Identities=12% Similarity=0.060 Sum_probs=137.8
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeee--cc------------cceEEEEe--cCCEEEEEe-CCceEEEEeccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKA--RH------------GEVRAILA--HDNMLFTTN-KDCKIRIWNFTVSDNFRT 64 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~--h~------------~~v~~i~~--~~~~l~s~~-~dg~i~iw~~~~~~~~~~ 64 (358)
.++-+..+.|+++|.... .+..+.+ .. ..-..+++ +++.|+++. ..+.|+++|+.++.....
T Consensus 583 yVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tl 661 (1057)
T PLN02919 583 FISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTL 661 (1057)
T ss_pred EEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEE
Confidence 344556678888887543 3333322 10 11234555 456555554 457899999876542111
Q ss_pred ccccccCCCceeeeecCCCc-cccCCCceEEEEEeC-CCCEEEEEecCCeEEEEEccCCcccccc------cccc-----
Q 038537 65 KKVTTLPRRSSFLSFSKSNT-QQQHRDCVSCMAFYH-AEGLLYTGSFDKTVKAWRVLDKRCTCVD------SFVA----- 131 (358)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~------~~~~----- 131 (358)
.. ...... .+..... ....-.....++++| ++.++++.+.++.|++||..++...... ...+
T Consensus 662 ag-~G~~g~----~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~ 736 (1057)
T PLN02919 662 AG-NGTKGS----DYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTS 736 (1057)
T ss_pred ec-cCcccC----CCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCcccc
Confidence 00 000000 0000000 000012346899999 5566677778899999998776421110 0001
Q ss_pred -cccCeEEEEEcCCCCE-EEEEeCCCcEEEEEceecCCccee---------eeeec--------ccCCceeEEEEeecCC
Q 038537 132 -HESNVNAIVVNQDDGF-VFTCSSDGSVKIWRRVYRENSHTL---------TMTLK--------FQQSSVNALALSSFFD 192 (358)
Q Consensus 132 -~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~---------~~~~~--------~~~~~i~~~~~~~~~~ 192 (358)
.-.....|+++|+++. +++-+.++.|++||+.++...... ...+. ..-.....+++++ +
T Consensus 737 ~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~--d 814 (1057)
T PLN02919 737 TSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK--D 814 (1057)
T ss_pred ccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC--C
Confidence 1124567999999884 455566799999998754321000 00000 0112346788887 8
Q ss_pred CcEEEEeecCCcEEEEEccCCcCCccccc---------eeec--ccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCc
Q 038537 193 NYFLYSGSSDGSINFWEKDKMSGGFNHGG---------FLQG--HCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 193 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 258 (358)
+.++++-..++.|++||..+......... ...+ ....-++++++|+++++-+.++.|++||+.+++
T Consensus 815 G~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 815 GQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 88888888999999999876321100000 0000 011225777889988998899999999998874
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=1.9e-09 Score=85.07 Aligned_cols=125 Identities=14% Similarity=0.194 Sum_probs=95.7
Q ss_pred CCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCc---ccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEce
Q 038537 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR---CTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRV 163 (358)
Q Consensus 88 h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~ 163 (358)
..+.|.++.|...+++++.|..+|.|..+|++... ..+... .-|.+.|+++.... ++++|++.+.+|+|.+||++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE-EEcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 45678899999889999999999999999998752 112222 24889999998877 78899999999999999998
Q ss_pred ecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCc
Q 038537 164 YRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMS 214 (358)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 214 (358)
.-+... -.....+|...-.-+-+.-.+....+++++.|...+||.++.+.
T Consensus 330 ~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 330 ATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhccc-ceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 665433 23455666554444444433477788899999999999999743
No 297
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=6e-08 Score=85.10 Aligned_cols=177 Identities=11% Similarity=0.065 Sum_probs=118.6
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
+++-|+.+|.|++.+....- .....|+.. ..+|.++++|+.||+|.|-.+.+.+....
T Consensus 51 ~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~~~~~---------------- 108 (846)
T KOG2066|consen 51 FFALGTHRGAVYLTTCQGNP--KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDDEITQ---------------- 108 (846)
T ss_pred eeeeccccceEEEEecCCcc--ccccccccc----ccCCceEEEecCCCcEEEeeccCCcccee----------------
Confidence 36778888888888865432 334444443 44689999999999999999887765432
Q ss_pred CCCccccCCCceEEEEEeCC-----CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC
Q 038537 81 KSNTQQQHRDCVSCMAFYHA-----EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG 155 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 155 (358)
..-..++.+++++|+ .+.+++|+.-| +.++.-.--.......+....++|.+++|. |++++-++.+|
T Consensus 109 -----~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G 180 (846)
T KOG2066|consen 109 -----YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG 180 (846)
T ss_pred -----EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC
Confidence 234567999999997 46899999988 777653321111122345567899999996 88999988777
Q ss_pred cEEEEEceecCCcceeeeeec--ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 156 SVKIWRRVYRENSHTLTMTLK--FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 156 ~i~~wd~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
|++||+.+++....+..... ....-...+.|. +...|+.|= ..+|++..++.
T Consensus 181 -v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~---~~~~LVIGW-~d~v~i~~I~~ 234 (846)
T KOG2066|consen 181 -VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQ---DEDRLVIGW-GDSVKICSIKK 234 (846)
T ss_pred -cEEEeccccceeeccCCCCCCCCcccCCCceEec---CCCeEEEec-CCeEEEEEEec
Confidence 99999876654332222111 112223456665 455666664 44799998884
No 298
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.95 E-value=3.3e-09 Score=58.08 Aligned_cols=38 Identities=32% Similarity=0.628 Sum_probs=35.9
Q ss_pred eeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 262 ECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 262 ~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
+++.++.+|.++|++|+|+|+ +.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT------SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc------cccceeeCCCCEEEEEC
Confidence 578899999999999999999 88999999999999997
No 299
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.95 E-value=3.1e-08 Score=87.98 Aligned_cols=180 Identities=14% Similarity=0.162 Sum_probs=134.0
Q ss_pred EeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCC
Q 038537 3 FTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82 (358)
Q Consensus 3 ~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
+-|+....+..+|+.+.+..+......+.|.-+..+++.+.+|...|+|.+-|.++.+.+
T Consensus 151 i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~i-------------------- 210 (1118)
T KOG1275|consen 151 IMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETI-------------------- 210 (1118)
T ss_pred eecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCcee--------------------
Confidence 345555567778888888777777666678888999999999999999999999877655
Q ss_pred CccccCCCceEEEEEeCCCCEEEEEecC---------CeEEEEEccCCcccccccccccccCeEEEEEcCC-CCEEEEEe
Q 038537 83 NTQQQHRDCVSCMAFYHAEGLLYTGSFD---------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD-DGFVFTCS 152 (358)
Q Consensus 83 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~ 152 (358)
+++..|.+.|..+.. .|+.|++++.. .-|+|||++..+ .+..+.-+.++ .-+.|+|. ...+++++
T Consensus 211 ht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr--al~PI~~~~~P-~flrf~Psl~t~~~V~S 285 (1118)
T KOG1275|consen 211 HTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR--ALSPIQFPYGP-QFLRFHPSLTTRLAVTS 285 (1118)
T ss_pred eeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhh--ccCCcccccCc-hhhhhcccccceEEEEe
Confidence 355789999988877 68889998764 458899998776 44444444443 55678884 45688888
Q ss_pred CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEE
Q 038537 153 SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWE 209 (358)
Q Consensus 153 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d 209 (358)
..|...+-|..+-.+...-..........+..+.+++ +++.++.|..+|.|.+|.
T Consensus 286 ~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSs--n~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 286 QSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISS--NGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccceeeccccccCCCccceeEEccCCCcceeEEecC--CCceEEEecccCcEeeec
Confidence 9999999984433222222222233345588888888 999999999999999998
No 300
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.92 E-value=1.6e-07 Score=75.32 Aligned_cols=223 Identities=15% Similarity=0.072 Sum_probs=125.9
Q ss_pred CceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccc
Q 038537 48 DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVD 127 (358)
Q Consensus 48 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 127 (358)
+|.|..||..+++.+....... .. ....+.. .+++..+++++.++.|..||..+++. +-
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-----------------~~-~~~~~~~-~~~~~~v~~~~~~~~l~~~d~~tG~~--~W 60 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-----------------GI-GGPVATA-VPDGGRVYVASGDGNLYALDAKTGKV--LW 60 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-----------------SC-SSEEETE-EEETTEEEEEETTSEEEEEETTTSEE--EE
T ss_pred CCEEEEEECCCCCEEEEEECCC-----------------CC-CCccceE-EEeCCEEEEEcCCCEEEEEECCCCCE--EE
Confidence 6889999998888877654311 11 1122212 22566777788999999999999883 32
Q ss_pred cccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCccee-eeeecccCCceeEEEEeecCCCcEEEEeecCCcEE
Q 038537 128 SFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTL-TMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSIN 206 (358)
Q Consensus 128 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 206 (358)
.+.. ..++.... ...+..+++++.++.++.+|..+++..+.. ........ ......... .++.++++..++.|.
T Consensus 61 ~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~g~l~ 135 (238)
T PF13360_consen 61 RFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAV--DGDRLYVGTSSGKLV 135 (238)
T ss_dssp EEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEE--ETTEEEEEETCSEEE
T ss_pred Eeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccc-cccccCceE--ecCEEEEEeccCcEE
Confidence 2221 11111111 224566777778889999998888766653 22111111 112222322 477888888899999
Q ss_pred EEEccCCcCCccccceeecccce-------eEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEe
Q 038537 207 FWEKDKMSGGFNHGGFLQGHCFA-------VLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAA 279 (358)
Q Consensus 207 i~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~ 279 (358)
.+|+++++............... .......+..++.++.++.+..+|+.+++. +.... ...+..+ .
T Consensus 136 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~----~w~~~--~~~~~~~-~ 208 (238)
T PF13360_consen 136 ALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGEK----LWSKP--ISGIYSL-P 208 (238)
T ss_dssp EEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTEE----EEEEC--SS-ECEC-E
T ss_pred EEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCCE----EEEec--CCCccCC-c
Confidence 99998865433321111000000 112222334777777777544449999952 22222 2222221 2
Q ss_pred ecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 280 SLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 280 ~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
... +..|+.++.++.|..||+++.
T Consensus 209 ~~~------~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 209 SVD------GGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp ECC------CTEEEEEETTTEEEEEETTTT
T ss_pred eee------CCEEEEEeCCCEEEEEECCCC
Confidence 233 556777779999999999853
No 301
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=5.7e-08 Score=85.25 Aligned_cols=186 Identities=17% Similarity=0.162 Sum_probs=132.1
Q ss_pred CCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCc
Q 038537 89 RDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENS 168 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 168 (358)
.+.+.|++++ +++|+-|+.+|.|++.+.... . .+...|... ..+|.++++|+.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~---~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN---P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc---c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence 4557777774 578999999999999997543 2 333344433 668999999999999999988766654
Q ss_pred ceeeeeecccCCceeEEEEeec---CCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeC
Q 038537 169 HTLTMTLKFQQSSVNALALSSF---FDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSE 245 (358)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 245 (358)
.+.. -..++.+++++|. ...+++++|+.-| +.++.-+-....... ......++|.++++.|+++|-++.
T Consensus 107 ~~~d-----f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~g~lIAWand 178 (846)
T KOG2066|consen 107 TQYD-----FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWRGNLIAWAND 178 (846)
T ss_pred eeEe-----cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--eeecCccceEEEEecCcEEEEecC
Confidence 4333 2578899999983 1367899999988 888765432221111 355667899999999999999998
Q ss_pred CCeEEEEEcCCCceeeeeeeeecCcccc------eEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 246 DTTIRVWRRAEGGCYHECLAVLDGHRGP------VRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~~~~h~~~------v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
+| |++||+.+.+ .+..++..... -..+.|.++ ..|+.|=.| +|+|..++
T Consensus 179 ~G-v~vyd~~~~~----~l~~i~~p~~~~R~e~fpphl~W~~~-------~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 179 DG-VKVYDTPTRQ----RLTNIPPPSQSVRPELFPPHLHWQDE-------DRLVIGWGD-SVKICSIK 233 (846)
T ss_pred CC-cEEEeccccc----eeeccCCCCCCCCcccCCCceEecCC-------CeEEEecCC-eEEEEEEe
Confidence 88 9999999873 33333332222 245677776 456666444 89999998
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.91 E-value=4.3e-06 Score=67.33 Aligned_cols=204 Identities=17% Similarity=0.110 Sum_probs=123.3
Q ss_pred CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEe-CCCCEEEEEecCCeEEEEE
Q 038537 39 DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFY-HAEGLLYTGSFDKTVKAWR 117 (358)
Q Consensus 39 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd 117 (358)
+.++++--..+.|..|+..++..... .... ...+++. +++ .|+.+...+ +.++|
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~~~~~~----------------------~~~~-~~G~~~~~~~g-~l~v~~~~~-~~~~d 66 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTGEVEVI----------------------DLPG-PNGMAFDRPDG-RLYVADSGG-IAVVD 66 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTTEEEEE----------------------ESSS-EEEEEEECTTS-EEEEEETTC-EEEEE
T ss_pred CEEEEEEcCCCEEEEEECCCCeEEEE----------------------ecCC-CceEEEEccCC-EEEEEEcCc-eEEEe
Confidence 44555655788899999877654210 1111 6677777 565 455555544 56669
Q ss_pred ccCCccccccccc--c-cccCeEEEEEcCCCCEEEEEeCC--------CcEEEEEceecCCcceeeeeecccCCceeEEE
Q 038537 118 VLDKRCTCVDSFV--A-HESNVNAIVVNQDDGFVFTCSSD--------GSVKIWRRVYRENSHTLTMTLKFQQSSVNALA 186 (358)
Q Consensus 118 ~~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~ 186 (358)
..+++...+.... . .....+.+++.|+|++.++.... |.|..++.. + +... ....-...+.++
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~----~~~~-~~~~~~~pNGi~ 140 (246)
T PF08450_consen 67 PDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-G----KVTV-VADGLGFPNGIA 140 (246)
T ss_dssp TTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-S----EEEE-EEEEESSEEEEE
T ss_pred cCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-C----eEEE-EecCcccccceE
Confidence 9888755554442 1 34568899999999977776544 446666553 1 1111 122345678999
Q ss_pred EeecCCCcEEE-EeecCCcEEEEEccCCcCCcccccee---eccc--ceeEEEeeeCCEEEEeeCCCeEEEEEcCCCcee
Q 038537 187 LSSFFDNYFLY-SGSSDGSINFWEKDKMSGGFNHGGFL---QGHC--FAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCY 260 (358)
Q Consensus 187 ~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 260 (358)
|+| +++.|+ +-+..+.|..|++............+ .... ..=.++..+|++.++....+.|.++|.. +
T Consensus 141 ~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G--- 214 (246)
T PF08450_consen 141 FSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G--- 214 (246)
T ss_dssp EET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---
T ss_pred ECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---
Confidence 998 887665 56678889999987533211111111 1111 1225667778888887789999999988 5
Q ss_pred eeeeeeecCcccceEEEEee
Q 038537 261 HECLAVLDGHRGPVRCLAAS 280 (358)
Q Consensus 261 ~~~~~~~~~h~~~v~~i~~~ 280 (358)
+.+..+.-....+++++|.
T Consensus 215 -~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 215 -KLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp -CEEEEEE-SSSSEEEEEEE
T ss_pred -cEEEEEcCCCCCEEEEEEE
Confidence 3344444444588999995
No 303
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=8.7e-06 Score=70.38 Aligned_cols=190 Identities=11% Similarity=0.041 Sum_probs=111.4
Q ss_pred ceEEEEEeCCCCE-EEEEecC---CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEE-eCC--CcEEEEEce
Q 038537 91 CVSCMAFYHAEGL-LYTGSFD---KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC-SSD--GSVKIWRRV 163 (358)
Q Consensus 91 ~v~~~~~~~~~~~-l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d--g~i~~wd~~ 163 (358)
....-.|+|+|+. ++..+.+ ..|.++|+.+++...+.. ..+......|+|||+.++.. +.+ ..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~---~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS---SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec---CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 5778999999984 6544433 569999998887333332 34556677899999877644 333 457777775
Q ss_pred ecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-CC--cEEEEEccCCcCCccccceeecccceeEEEeeeCCEE
Q 038537 164 YRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-DG--SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLI 240 (358)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (358)
.+. ... +..+........|+| +++.|+..+. .+ .|++.|+..+... ... ..+.. ...++|+|+.|
T Consensus 266 ~g~-~~~----LT~~~~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-rlt--~~g~~--~~~~SPDG~~I 333 (419)
T PRK04043 266 TKT-LTQ----ITNYPGIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLNSGSVE-QVV--FHGKN--NSSVSTYKNYI 333 (419)
T ss_pred CCc-EEE----cccCCCccCccEECC--CCCEEEEEECCCCCceEEEEECCCCCeE-eCc--cCCCc--CceECCCCCEE
Confidence 443 111 111222234457888 8887776653 33 5777777653321 111 11221 24789999988
Q ss_pred EEeeCC---------CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEcc-CCCcEEEEEee
Q 038537 241 FSGSED---------TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSS-LDQTFKVWRVK 307 (358)
Q Consensus 241 ~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~-~dg~v~iw~~~ 307 (358)
+..... ..|.+.|+.+++. +.+. .. .......|+|+ |+.|+-.+ ..+.-.++-+.
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g~~--~~LT---~~-~~~~~p~~SPD------G~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSDYI--RRLT---AN-GVNQFPRFSSD------GGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCCCe--EECC---CC-CCcCCeEECCC------CCEEEEEEccCCcEEEEEEe
Confidence 766543 3688889888742 2222 22 12235789999 66554433 33444455444
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.87 E-value=1.6e-07 Score=83.67 Aligned_cols=188 Identities=10% Similarity=0.079 Sum_probs=130.0
Q ss_pred CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccC
Q 038537 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ 179 (358)
Q Consensus 100 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 179 (358)
++..++.|+....+..+|+++.+ ..+...-..+.|+-++. +++.+.+|...|+|.+-|+++ .+....+.+|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~--e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s----~~~iht~~aHs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEK--ETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS----FETIHTFDAHS 217 (1118)
T ss_pred CCcceeecchhhheeeeecccce--eeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc----Cceeeeeeccc
Confidence 34567777777788889998876 33333222334666655 588999999999999999854 44566778899
Q ss_pred CceeEEEEeecCCCcEEEEeec---------CCcEEEEEccCCcCCccccceeecccceeEEEeee-CCEEEEeeCCCeE
Q 038537 180 SSVNALALSSFFDNYFLYSGSS---------DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI-EKLIFSGSEDTTI 249 (358)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i 249 (358)
+.|..+.. .|+.|++++. |..|++||++.......... ..+ .....+.|. ...+++++..|..
T Consensus 218 ~siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~-~~~--P~flrf~Psl~t~~~V~S~sGq~ 290 (1118)
T KOG1275|consen 218 GSISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF-PYG--PQFLRFHPSLTTRLAVTSQSGQF 290 (1118)
T ss_pred cceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc-ccC--chhhhhcccccceEEEEecccce
Confidence 99988877 5888888875 56789999998543222111 111 123445553 5678888889999
Q ss_pred EEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 250 RVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 250 ~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.+-|..+...+..-+.........+.++.++++ ++.++.|..+|.|.+|.-++
T Consensus 291 q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn------~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 291 QFVDTATLSNPPAGVKMVNPNGSGISAFDISSN------GDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred eeccccccCCCccceeEEccCCCcceeEEecCC------CceEEEecccCcEeeecCCC
Confidence 999954433211223333334456999999999 88999999999999998443
No 305
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=5.6e-07 Score=72.93 Aligned_cols=257 Identities=11% Similarity=0.089 Sum_probs=146.9
Q ss_pred EEEEeCCCceeeeeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCcccc
Q 038537 11 IRVWRQPDCVERGFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQ 87 (358)
Q Consensus 11 v~vw~~~~~~~~~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (358)
|++.+..+.+....+..|...|..+++. ..++..++.+.+|+|.|+++....... ..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy--------------------~a 234 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY--------------------IA 234 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe--------------------ec
Confidence 6667766767677777888889988773 347889999999999999987655332 23
Q ss_pred CCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCcccccccccc--cccCeEEEEEcC------CCCEEEEEeCCCcEE
Q 038537 88 HRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCVDSFVA--HESNVNAIVVNQ------DDGFVFTCSSDGSVK 158 (358)
Q Consensus 88 h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~------~~~~l~~~~~dg~i~ 158 (358)
+ ..+++++|.-+. .+|..|...|.|.+||++..+. .+..+.+ ...+|..++.-+ .+.+++....+ +.
T Consensus 235 ~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~-~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~ 310 (463)
T KOG1645|consen 235 Y-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG-PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQ 310 (463)
T ss_pred c-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc-hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hh
Confidence 4 679999998754 5788889999999999987652 2333322 234555554332 34444444332 55
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC-C------c----------EEEEEccCCcCCccccc
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD-G------S----------INFWEKDKMSGGFNHGG 221 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-g------~----------i~i~d~~~~~~~~~~~~ 221 (358)
.|++............+. ..+...++.+.+ ..+.++..... . . -.+|..+.... -...
T Consensus 311 f~ei~~s~~~~p~vlele-~pG~cismqy~~--~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~--Gs~~ 385 (463)
T KOG1645|consen 311 FYEIVFSAECLPCVLELE-PPGICISMQYHG--VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYF--GSKQ 385 (463)
T ss_pred hhhhhccccCCCcccccC-CCcceeeeeecC--ccceEEEEecCCCCCccceeeeeeeccccCceeeeeccccc--CCcc
Confidence 666544333333222211 233444444444 33333333221 0 0 11121111000 0000
Q ss_pred eeecccceeEEEeeeCCEE-EEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCc
Q 038537 222 FLQGHCFAVLCLVAIEKLI-FSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQT 300 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~ 300 (358)
..-+.....--.++.+++ ..|+..+.+.+||..+. +.++.+. -..+|.+++....+. +.+|++-.+| .
T Consensus 386 -~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~----evvQ~l~-~~epv~Dicp~~~n~----~syLa~LTd~-~ 454 (463)
T KOG1645|consen 386 -TKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF----EVVQTLA-LSEPVLDICPNDTNG----SSYLALLTDD-R 454 (463)
T ss_pred -cccccccceeccccccEEEEecCCcceeEEeccchh----heeeecc-cCcceeecceeecCC----cchhhheecc-e
Confidence 000111111112333444 45667788999999998 4555553 347899988776644 6688777654 8
Q ss_pred EEEEEee
Q 038537 301 FKVWRVK 307 (358)
Q Consensus 301 v~iw~~~ 307 (358)
++|+..+
T Consensus 455 v~Iyk~e 461 (463)
T KOG1645|consen 455 VHIYKNE 461 (463)
T ss_pred EEEEecC
Confidence 8888654
No 306
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.84 E-value=1.8e-09 Score=92.06 Aligned_cols=207 Identities=15% Similarity=0.172 Sum_probs=133.0
Q ss_pred CCceEEEEEeCC--CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeC----CCcEEEEE
Q 038537 89 RDCVSCMAFYHA--EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSS----DGSVKIWR 161 (358)
Q Consensus 89 ~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----dg~i~~wd 161 (358)
...+.|+++.-+ ...++.|..+|.|.+-.++...-.......++..++++++|++ |.+.|++|-. |..+.+||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 344778877543 3478899999999999887655322334556788999999998 6677777743 67899999
Q ss_pred ceecCCcceeeeeecc-cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee-eCCE
Q 038537 162 RVYRENSHTLTMTLKF-QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA-IEKL 239 (358)
Q Consensus 162 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 239 (358)
+.+.-....-...+.. ......+++|.. +.+++.+|...+.++++|++..........+ ..+ .-..+.| .+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlr--d~klvlaGm~sr~~~ifdlRqs~~~~~svnT-k~v--qG~tVdp~~~nY 210 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLR--DTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT-KYV--QGITVDPFSPNY 210 (783)
T ss_pred cccccCCCccccccccccccCcccccccc--Ccchhhcccccchhhhhhhhhhhhhhhhhhh-hhc--ccceecCCCCCc
Confidence 9766221111111111 234455777775 8889999999999999999842111111110 011 1134455 6788
Q ss_pred EEEeeCCCeEEEEEc-CCCceeeeeeeeecCcc----cceEEEEeecccceeeeCeEEEEcc-CCCcEEEEEeeeC
Q 038537 240 IFSGSEDTTIRVWRR-AEGGCYHECLAVLDGHR----GPVRCLAASLEMEKVVMGFLVYSSS-LDQTFKVWRVKVM 309 (358)
Q Consensus 240 l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~h~----~~v~~i~~~~~~~~~~~~~~l~s~~-~dg~v~iw~~~~~ 309 (358)
+++-. ||.|.+||. +.-+ .++..+.... ..+..++|+|..+ | ++++.. ..++|+.+|+..-
T Consensus 211 ~cs~~-dg~iAiwD~~rnie---npl~~i~~~~N~~~~~l~~~aycPtrt----g-lla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIE---NPLQIILRNENKKPKQLFALAYCPTRT----G-LLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred eeccc-cCceeeccchhhhc---cHHHHHhhCCCCcccceeeEEeccCCc----c-hhhhhccCcceEEEeccccc
Confidence 88776 999999993 3332 2333332222 2499999999875 5 455554 5578999998753
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.81 E-value=1.5e-08 Score=55.48 Aligned_cols=37 Identities=38% Similarity=0.831 Sum_probs=35.3
Q ss_pred ccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038537 125 CVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWR 161 (358)
Q Consensus 125 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 161 (358)
++..+.+|.++|.+++|+|++.+|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 6778899999999999999999999999999999997
No 308
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.81 E-value=1.9e-06 Score=75.02 Aligned_cols=136 Identities=10% Similarity=0.146 Sum_probs=90.5
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceE---EEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVR---AILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~---~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
+++.|++-|.+++|+-..++....-.+-...+. +++.+..++|.|+..|.|.++-++..............
T Consensus 47 ~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d------ 120 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD------ 120 (726)
T ss_pred eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc------
Confidence 578899999999999877765544332222222 34556778888999999999988864332222221111
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcc--cccccccccccCeEEEEEcCCCCEEEEE
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRC--TCVDSFVAHESNVNAIVVNQDDGFVFTC 151 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 151 (358)
..|...|+|++|++++..+++|...|+|..-.+..... -..+.+....+.|..+.+. ++.+|++.
T Consensus 121 --------~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVSt 187 (726)
T KOG3621|consen 121 --------KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVST 187 (726)
T ss_pred --------ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhh
Confidence 34889999999999999999999999999988876210 0122233345677777765 34444443
No 309
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.81 E-value=2.6e-06 Score=70.77 Aligned_cols=144 Identities=11% Similarity=0.053 Sum_probs=111.5
Q ss_pred cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCC-eEEEE
Q 038537 38 HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDK-TVKAW 116 (358)
Q Consensus 38 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg-~i~iw 116 (358)
+|++++..|. |...|.+...+-.++ -+|...|.-..+..++.-++.|..|| .+-|+
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq----------------------v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iy 387 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ----------------------VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIY 387 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE----------------------cCCCCceEEEEEccCCcceEEeccCCceEEEE
Confidence 5788888875 566666554443322 46777788888888888899999999 99999
Q ss_pred EccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEE
Q 038537 117 RVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFL 196 (358)
Q Consensus 117 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 196 (358)
|.++++ ...+...-+.|.++..+|+|++++++.....+.+.|+.++.. ...-+...+-|+...|+| ++.++
T Consensus 388 d~~~~e---~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv----~~idkS~~~lItdf~~~~--nsr~i 458 (668)
T COG4946 388 DKDGGE---VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV----RLIDKSEYGLITDFDWHP--NSRWI 458 (668)
T ss_pred ecCCce---EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe----eEecccccceeEEEEEcC--CceeE
Confidence 999887 444555668899999999999999999999999999976652 223334567899999998 99999
Q ss_pred EEeecCC----cEEEEEccCC
Q 038537 197 YSGSSDG----SINFWEKDKM 213 (358)
Q Consensus 197 ~~~~~dg----~i~i~d~~~~ 213 (358)
|-+--+| .|++||+...
T Consensus 459 AYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 459 AYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred EEecCcceeeeeEEEEecCCC
Confidence 9876655 6899998873
No 310
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=2.8e-06 Score=75.60 Aligned_cols=215 Identities=11% Similarity=0.146 Sum_probs=131.7
Q ss_pred ceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCc-eEEEEEeCCCCEEEEEec
Q 038537 31 EVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDC-VSCMAFYHAEGLLYTGSF 109 (358)
Q Consensus 31 ~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~~~~~ 109 (358)
.|.++...+..++.|+.+|.|.+.+-.-. .+. .++.+... |..+-......+|++.+.
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~-~~~--------------------~fqa~~~siv~~L~~~~~~~~L~sv~E 85 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQ-LIR--------------------GFQAYEQSIVQFLYILNKQNFLFSVGE 85 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccce-eee--------------------hheecchhhhhHhhcccCceEEEEEee
Confidence 78888899999999999999988774321 111 12344444 444444444467887766
Q ss_pred CC-----eEEEEEccCCc----cccc--cccc-----ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeee
Q 038537 110 DK-----TVKAWRVLDKR----CTCV--DSFV-----AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTM 173 (358)
Q Consensus 110 dg-----~i~iwd~~~~~----~~~~--~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 173 (358)
|+ .++||+++..+ ..++ ..+. ....++.+++.+.+-+.+++|-.+|.|..+.-.--........
T Consensus 86 d~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~ 165 (933)
T KOG2114|consen 86 DEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD 165 (933)
T ss_pred cCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee
Confidence 64 59999986532 1122 1111 2356889999999999999999999999985221111111111
Q ss_pred eecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeee-C-CEEEEeeCCCeEEE
Q 038537 174 TLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI-E-KLIFSGSEDTTIRV 251 (358)
Q Consensus 174 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~dg~i~i 251 (358)
.......+|+.+++.. ++..++-...-..|.+|.+.... .....+..+.....|.+.+ + ..+++++. ..+.+
T Consensus 166 ~~~~~~~pITgL~~~~--d~~s~lFv~Tt~~V~~y~l~gr~---p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~f 239 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRS--DGKSVLFVATTEQVMLYSLSGRT---PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYF 239 (933)
T ss_pred eeccCCCCceeeEEec--CCceeEEEEecceeEEEEecCCC---cceeeeccCCccceeeecCCCCccEEEecC-ceEEE
Confidence 2223468999999987 56553333344579999988422 2223355666667676654 2 22444443 45999
Q ss_pred EEcCCCceeeeeeeeec-CcccceEE
Q 038537 252 WRRAEGGCYHECLAVLD-GHRGPVRC 276 (358)
Q Consensus 252 wd~~~~~~~~~~~~~~~-~h~~~v~~ 276 (358)
|+.... .+-..+. +|......
T Consensus 240 Y~sd~~----~~cfaf~~g~kk~~~~ 261 (933)
T KOG2114|consen 240 YDSDGR----GPCFAFEVGEKKEMLV 261 (933)
T ss_pred EcCCCc----ceeeeecCCCeEEEEE
Confidence 998866 3344454 66554433
No 311
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=1.2e-05 Score=69.53 Aligned_cols=209 Identities=8% Similarity=-0.043 Sum_probs=114.7
Q ss_pred cEEEEeCCCceeeeeeeecccceE--EEEecCCE-EEEEeC---CceEEEEecccccccccccccccCCCceeeeecCCC
Q 038537 10 RIRVWRQPDCVERGFIKARHGEVR--AILAHDNM-LFTTNK---DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSN 83 (358)
Q Consensus 10 ~v~vw~~~~~~~~~~~~~h~~~v~--~i~~~~~~-l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
.|.+=|............ . .+. ..+++++. ++..+. +..|.++|+.+++....
T Consensus 170 ~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l------------------- 228 (419)
T PRK04043 170 NIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI------------------- 228 (419)
T ss_pred eEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-------------------
Confidence 455555544333222222 2 333 33456764 554333 35688888877654321
Q ss_pred ccccCCCceEEEEEeCCCCEEEEE-ecC--CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-CC--cE
Q 038537 84 TQQQHRDCVSCMAFYHAEGLLYTG-SFD--KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DG--SV 157 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~~~l~~~-~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i 157 (358)
....+......|+|||+.|+.. +.+ ..|.++|+.+++... +..+........|+|||+.|+..+. .+ .|
T Consensus 229 --t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~---LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~I 303 (419)
T PRK04043 229 --ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ---ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNI 303 (419)
T ss_pred --ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE---cccCCCccCccEECCCCCEEEEEECCCCCceE
Confidence 1223335567899999876543 333 568888887776333 3223332345579999987776654 33 56
Q ss_pred EEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC---------CcEEEEEccCCcCCccccceeecccc
Q 038537 158 KIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD---------GSINFWEKDKMSGGFNHGGFLQGHCF 228 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~ 228 (358)
.+.|+..++.. .+. ..+ . ....|+| +++.++..... ..|.+.|+..+... .+.. ....
T Consensus 304 y~~dl~~g~~~-rlt--~~g--~--~~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~---~~~~ 370 (419)
T PRK04043 304 FMKKLNSGSVE-QVV--FHG--K--NNSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA---NGVN 370 (419)
T ss_pred EEEECCCCCeE-eCc--cCC--C--cCceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC---CCCc
Confidence 66777544321 111 111 1 1247887 89888776654 26788887764321 1111 1122
Q ss_pred eeEEEeeeCCEEEEeeCC---CeEEEEEcCCC
Q 038537 229 AVLCLVAIEKLIFSGSED---TTIRVWRRAEG 257 (358)
Q Consensus 229 ~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~ 257 (358)
....++|+|+.|+....+ ..+.+.++...
T Consensus 371 ~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 371 QFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 236789999877665432 23666677654
No 312
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=5.8e-06 Score=70.04 Aligned_cols=268 Identities=9% Similarity=0.018 Sum_probs=151.4
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeC-----------CceEEEEeccccccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNK-----------DCKIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~-----------dg~i~iw~~~~~~~~~~~~~~~~ 70 (358)
|+|--.-| |.+|--++...++.+....-.-..++++.+||+|-+. ...++|||+.++...+.+....
T Consensus 225 L~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~- 302 (698)
T KOG2314|consen 225 LVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIK- 302 (698)
T ss_pred EEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccC-
Confidence 34444444 6777666655555554333344466777889998653 2579999999998776655321
Q ss_pred CCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEE
Q 038537 71 PRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFT 150 (358)
Q Consensus 71 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 150 (358)
+....-.-+.||.|++++|.-.. ..|.||+...-.+.....+ .-..|....|+|.++.||-
T Consensus 303 ----------------~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl--ki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 303 ----------------SPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL--KISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred ----------------CCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc--CCccccCcccCCCcceEEE
Confidence 11112335789999999998776 4699998766442112222 3456888899999877664
Q ss_pred EeCC-----CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEee----------cCCcEEEEEccCCcC
Q 038537 151 CSSD-----GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS----------SDGSINFWEKDKMSG 215 (358)
Q Consensus 151 ~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~ 215 (358)
=... ..+.+-.+.++.. ...... -.|..+......+|.+|+.-- .=..+-|+.++...-
T Consensus 364 wtpe~~~~parvtL~evPs~~~----iRt~nl--fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI 437 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKRE----IRTKNL--FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI 437 (698)
T ss_pred EcccccCCcceEEEEecCccce----eeeccc--eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC
Confidence 3321 1233333322211 111111 123333333333666665421 112355666654221
Q ss_pred CccccceeecccceeEEEe--eeCCEEEEee---CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCe
Q 038537 216 GFNHGGFLQGHCFAVLCLV--AIEKLIFSGS---EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGF 290 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~ 290 (358)
+. ....-...+..+. |.|+.+++-+ ...++.+|.+.+.....+++..+.. ...+.+.|+|. |+
T Consensus 438 pv----e~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPk------G~ 505 (698)
T KOG2314|consen 438 PV----EVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPK------GR 505 (698)
T ss_pred Cc----eeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCC------Cc
Confidence 11 1122233455554 5676665543 2356889988754332344555543 45688999999 77
Q ss_pred EEEEcc---CCCcEEEEEeee
Q 038537 291 LVYSSS---LDQTFKVWRVKV 308 (358)
Q Consensus 291 ~l~s~~---~dg~v~iw~~~~ 308 (358)
+++.+. ..|.+.++|+..
T Consensus 506 fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 506 FVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred EEEEEEecccccceEEEecch
Confidence 776654 578899999885
No 313
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.74 E-value=1.2e-05 Score=71.35 Aligned_cols=274 Identities=12% Similarity=0.091 Sum_probs=151.2
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeeccc------ceE--EEEecC-CEEEEEeCCceEEEEecccccccccccccccCC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHG------EVR--AILAHD-NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPR 72 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~------~v~--~i~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 72 (358)
++.++.++.|.-.|..+++.+..+..... .+. .+...+ +.++.++.+|.|.-+|.++++.+..........
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~ 143 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVP 143 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcC
Confidence 56777889999999999988766654322 111 123334 788889999999999999998887654322100
Q ss_pred CceeeeecCCCccccCCCceE-EEEEeCCCCEEEEEe---------cCCeEEEEEccCCccccccccccc-c--------
Q 038537 73 RSSFLSFSKSNTQQQHRDCVS-CMAFYHAEGLLYTGS---------FDKTVKAWRVLDKRCTCVDSFVAH-E-------- 133 (358)
Q Consensus 73 ~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~-~-------- 133 (358)
....+. ...+. +..++.++ .++.+..+|..+++. +-.+... .
T Consensus 144 ---------------~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~--~W~~~~~~~~~~~~~~~ 204 (488)
T cd00216 144 ---------------PGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKL--LWRFYTTEPDPNAFPTW 204 (488)
T ss_pred ---------------cceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCce--eeEeeccCCCcCCCCCC
Confidence 000000 01111 23344443 367888888888762 2222110 0
Q ss_pred -----------cCe-EEEEEcCCCCEEEEEeCCC------------------cEEEEEceecCCcceeeeeecc-cC-Cc
Q 038537 134 -----------SNV-NAIVVNQDDGFVFTCSSDG------------------SVKIWRRVYRENSHTLTMTLKF-QQ-SS 181 (358)
Q Consensus 134 -----------~~v-~~~~~~~~~~~l~~~~~dg------------------~i~~wd~~~~~~~~~~~~~~~~-~~-~~ 181 (358)
..+ ....+.+.+..++.++.++ .|.-+|..+++..+........ .. ..
T Consensus 205 ~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~ 284 (488)
T cd00216 205 GPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDG 284 (488)
T ss_pred CCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccccc
Confidence 011 1234555567788887665 6888899888876665322110 00 00
Q ss_pred eeEEEEee--cCCC---cEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEe-------------
Q 038537 182 VNALALSS--FFDN---YFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSG------------- 243 (358)
Q Consensus 182 i~~~~~~~--~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------- 243 (358)
.....+.. .-++ ..++.++.+|.+..+|.++++........ .. -...++ +.++.+
T Consensus 285 ~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~--~~---~~~~~~--~~vyv~~~~~~~~~~~~~~ 357 (488)
T cd00216 285 PNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV--EQ---PMAYDP--GLVYLGAFHIPLGLPPQKK 357 (488)
T ss_pred CCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--cc---ccccCC--ceEEEccccccccCccccc
Confidence 00011110 0123 26788888999999999987654443211 00 011112 333332
Q ss_pred -----eCCCeEEEEEcCCCceeeeeeeeecCcc------cce--EEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 244 -----SEDTTIRVWRRAEGGCYHECLAVLDGHR------GPV--RCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 244 -----~~dg~i~iwd~~~~~~~~~~~~~~~~h~------~~v--~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
..+|.+.-.|+.+++..++.-. ..+. .+. ..+... +..|+.++.||.|+.+|.++.+
T Consensus 358 ~~~~~~~~G~l~AlD~~tG~~~W~~~~--~~~~~~~~~g~~~~~~~~~~~--------g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 358 KRCKKPGKGGLAALDPKTGKVVWEKRE--GTIRDSWNIGFPHWGGSLATA--------GNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred CCCCCCCceEEEEEeCCCCcEeeEeeC--CccccccccCCcccCcceEec--------CCeEEEECCCCeEEEEECCCCc
Confidence 2467888999999865443221 1111 111 111222 5688888899999999987644
Q ss_pred C
Q 038537 311 D 311 (358)
Q Consensus 311 ~ 311 (358)
.
T Consensus 428 ~ 428 (488)
T cd00216 428 E 428 (488)
T ss_pred e
Confidence 3
No 314
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.72 E-value=7e-05 Score=60.29 Aligned_cols=187 Identities=13% Similarity=0.035 Sum_probs=110.2
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe-cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA-HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
+++--..+.|..|+..+++... +.... +.-.... .++.++.+...+ +.++|..+++..........
T Consensus 15 ~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~---------- 81 (246)
T PF08450_consen 15 YWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDG---------- 81 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETT----------
T ss_pred EEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCC----------
Confidence 3444456778888877765433 22222 3322222 456677676655 45558877644322221000
Q ss_pred CCCccccCCCceEEEEEeCCCCEEEEEecC--------CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEE-EE
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGLLYTGSFD--------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVF-TC 151 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~ 151 (358)
.......+.+++.|+|++.++.... |.|..++.. ++ +......-...+.|+|+|+++.|+ +-
T Consensus 82 -----~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---~~~~~~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 82 -----GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---VTVVADGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp -----CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---EEEEEEEESSEEEEEEETTSSEEEEEE
T ss_pred -----CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---EEEEecCcccccceEECCcchheeecc
Confidence 1134568899999999977765543 557777766 44 222223345678999999998776 55
Q ss_pred eCCCcEEEEEceecCCcce---eeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 152 SSDGSVKIWRRVYRENSHT---LTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 152 ~~dg~i~~wd~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
+..+.|..+++........ ....+.........+++.. ++++.++....+.|.++|.+.
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~--~G~l~va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS--DGNLWVADWGGGRIVVFDPDG 214 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT--TS-EEEEEETTTEEEEEETTS
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC--CCCEEEEEcCCCEEEEECCCc
Confidence 6678888888864433111 1112222223478899987 888888888899999999773
No 315
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.72 E-value=4.2e-06 Score=70.04 Aligned_cols=256 Identities=16% Similarity=0.115 Sum_probs=153.7
Q ss_pred EEeCCCceeeeeeeecccceEEE--EecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCC
Q 038537 13 VWRQPDCVERGFIKARHGEVRAI--LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRD 90 (358)
Q Consensus 13 vw~~~~~~~~~~~~~h~~~v~~i--~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 90 (358)
+|+..+...-..+....-++... ++.|.+|++.... .|.+|.-.....+... .| .
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~---------------------~~-~ 72 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRF---------------------RH-P 72 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeee---------------------ec-C
Confidence 35544444433444344455555 4457788776654 5889987765433221 22 3
Q ss_pred ceEEEEEeCCCCEEEEEecCC---------------eEEEEEccCCcccccccccccccC--eE-EEEEcCCCCEEEEEe
Q 038537 91 CVSCMAFYHAEGLLYTGSFDK---------------TVKAWRVLDKRCTCVDSFVAHESN--VN-AIVVNQDDGFVFTCS 152 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~ 152 (358)
.|..+.|+|++++|.+=+..+ .+.+||+.++. .+..+.....+ .. -+.|+-+..+++-.
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~--iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGM--IVFSFNGISQPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCce--eEeeccccCCcccccceeeeeecchhhhhh-
Confidence 388999999999999866543 49999999998 66666555444 44 67788888776655
Q ss_pred CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEE-----eecCCcEEEEEccCCcCCccccceeeccc
Q 038537 153 SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYS-----GSSDGSINFWEKDKMSGGFNHGGFLQGHC 227 (358)
Q Consensus 153 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-----~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 227 (358)
....++++++ ++.........+ ....+....++|..++..|+. ...++.+++|.+........ ..+..-.
T Consensus 150 v~~sl~i~e~-t~n~~~~p~~~l--r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t--k~lfk~~ 224 (561)
T COG5354 150 VGSSLYIHEI-TDNIEEHPFKNL--RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT--KNLFKVS 224 (561)
T ss_pred ccCeEEEEec-CCccccCchhhc--cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeee--eeeEeec
Confidence 3456999997 332221111111 136778888888555555554 45678899998875221111 1111111
Q ss_pred ceeEEEeeeCCEEEEee-----------CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEcc
Q 038537 228 FAVLCLVAIEKLIFSGS-----------EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSS 296 (358)
Q Consensus 228 ~~~~~~~~~~~~l~~~~-----------~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~ 296 (358)
..-+.+.+.|++|+.-- ....++++++.... +.....-.++|...+|.|... +--+++|-
T Consensus 225 ~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-----i~V~~~~~~pVhdf~W~p~S~----~F~vi~g~ 295 (561)
T COG5354 225 GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-----IPVEKDLKDPVHDFTWEPLSS----RFAVISGY 295 (561)
T ss_pred ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-----cceeccccccceeeeecccCC----ceeEEecc
Confidence 11223334455443211 23458888887542 223335678999999999844 33455666
Q ss_pred CCCcEEEEEeee
Q 038537 297 LDQTFKVWRVKV 308 (358)
Q Consensus 297 ~dg~v~iw~~~~ 308 (358)
.+-.+.++|++.
T Consensus 296 ~pa~~s~~~lr~ 307 (561)
T COG5354 296 MPASVSVFDLRG 307 (561)
T ss_pred cccceeeccccc
Confidence 888899998874
No 316
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.69 E-value=1.2e-05 Score=68.50 Aligned_cols=263 Identities=10% Similarity=0.063 Sum_probs=130.9
Q ss_pred ceEEEEe--cCCEEEEEeCCceEEEEecccccccc-ccccccc----------CCCceee------------eecCCCcc
Q 038537 31 EVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFR-TKKVTTL----------PRRSSFL------------SFSKSNTQ 85 (358)
Q Consensus 31 ~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~~~~----------~~~~~~~------------~~~~~~~~ 85 (358)
.|..+++ ....|++|...|.|.||.....+... ....... ....... .|.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 3555555 56689999999999999877554332 0000000 0001111 12233344
Q ss_pred ccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccc------cccCeEEEEEcC-----CC---CEEEEE
Q 038537 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA------HESNVNAIVVNQ-----DD---GFVFTC 151 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~---~~l~~~ 151 (358)
....++|++++.+ +=.+++.|..+|.+.|.|++.........+.. ....|+++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 5568999999998 55589999999999999998776322222222 345688888862 32 478899
Q ss_pred eCCCcEEEEEcee-cCCcce--eeeeecccCCceeEEEEeecC-------------------CCcEEEEeecCCcEEEEE
Q 038537 152 SSDGSVKIWRRVY-RENSHT--LTMTLKFQQSSVNALALSSFF-------------------DNYFLYSGSSDGSINFWE 209 (358)
Q Consensus 152 ~~dg~i~~wd~~~-~~~~~~--~~~~~~~~~~~i~~~~~~~~~-------------------~~~~l~~~~~dg~i~i~d 209 (358)
+..|.+.+|.+.- ...... +......+.+.+..+..-... .-..++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999998863 221111 111222345565555533110 011234444567899998
Q ss_pred ccCCcCCccccceeecccceeEEE-----eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecC----cccceEEEEee
Q 038537 210 KDKMSGGFNHGGFLQGHCFAVLCL-----VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDG----HRGPVRCLAAS 280 (358)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----h~~~v~~i~~~ 280 (358)
..+.+...+.. .........++ ...+..|++-..+|.|++|.+..-+ .+..+.- +...+...+++
T Consensus 242 ~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk----ei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 242 PPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK----EIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT------EEEEEE-SS---HHHHTT-EE-
T ss_pred CCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch----HhhcccCCCccccccccccEEC
Confidence 87643322221 11111122233 2246788888899999999999874 3333332 22345566778
Q ss_pred cccceeeeCeEEEEccCCCcEEEEEee
Q 038537 281 LEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 281 ~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
++ |+.++-.|.. .+.++.+-
T Consensus 316 ~~------Gdi~~~~gps-E~~l~sv~ 335 (395)
T PF08596_consen 316 RN------GDIFYWTGPS-EIQLFSVW 335 (395)
T ss_dssp TT------S-EEEE-SSS-EEEEEEEE
T ss_pred CC------CCEEEEeCcc-cEEEEEEE
Confidence 77 7777666543 45555443
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.67 E-value=2.6e-05 Score=72.37 Aligned_cols=223 Identities=13% Similarity=0.111 Sum_probs=131.1
Q ss_pred cceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEE
Q 038537 30 GEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTG 107 (358)
Q Consensus 30 ~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 107 (358)
..|.++.+ +++.++.+..+|.|.+-|..+..... ...-...|.+++|+||+..++..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei---------------------vg~vd~GI~aaswS~Dee~l~li 127 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI---------------------VGNVDNGISAASWSPDEELLALI 127 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee---------------------eeeccCceEEEeecCCCcEEEEE
Confidence 46777776 67788888889999988776654321 12345679999999999999988
Q ss_pred ecCCeEEEEEcc----CCc-c----------c------ccccccc---------------------cccCeEEEEEcCCC
Q 038537 108 SFDKTVKAWRVL----DKR-C----------T------CVDSFVA---------------------HESNVNAIVVNQDD 145 (358)
Q Consensus 108 ~~dg~i~iwd~~----~~~-~----------~------~~~~~~~---------------------~~~~v~~~~~~~~~ 145 (358)
+..+++.+-+-. ..+ . . ....+.+ ..+.=+.|+|--||
T Consensus 128 T~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg 207 (1265)
T KOG1920|consen 128 TGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG 207 (1265)
T ss_pred eCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC
Confidence 888877765431 000 0 0 0001110 01112358999999
Q ss_pred CEEEEEe-----CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEee---cCCcEEEEEccCCcCC-
Q 038537 146 GFVFTCS-----SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS---SDGSINFWEKDKMSGG- 216 (358)
Q Consensus 146 ~~l~~~~-----~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~- 216 (358)
+++++.. ....|++||-+ + .+..........-.+++|-| .|..+++-. .|+.|.+|.-+.....
T Consensus 208 ~~fAVs~~~~~~~~RkirV~drE-g----~Lns~se~~~~l~~~LsWkP--sgs~iA~iq~~~sd~~IvffErNGL~hg~ 280 (1265)
T KOG1920|consen 208 EYFAVSFVESETGTRKIRVYDRE-G----ALNSTSEPVEGLQHSLSWKP--SGSLIAAIQCKTSDSDIVFFERNGLRHGE 280 (1265)
T ss_pred cEEEEEEEeccCCceeEEEeccc-c----hhhcccCcccccccceeecC--CCCeEeeeeecCCCCcEEEEecCCccccc
Confidence 9998843 23789999964 2 11111122234446788988 888888754 3567999986652211
Q ss_pred ccccceeecccceeEEEeeeCCEEEE---eeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccc
Q 038537 217 FNHGGFLQGHCFAVLCLVAIEKLIFS---GSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEME 284 (358)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~ 284 (358)
+............-+++..++..|++ ......|++|-+.+-....++...+.. ... +.|+|..+
T Consensus 281 f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~--~~~--~~W~p~~~ 347 (1265)
T KOG1920|consen 281 FVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQ--KAL--LMWDPVTE 347 (1265)
T ss_pred cccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccc--ccc--ccccCCCc
Confidence 11111111111223455556788877 556666999998876543333332222 111 66666543
No 318
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=4.9e-07 Score=74.30 Aligned_cols=209 Identities=14% Similarity=0.072 Sum_probs=139.7
Q ss_pred cCCCceEEEEEeCCCCEEEEEecCCeEEEEEccC-CcccccccccccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEcee
Q 038537 87 QHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLD-KRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DGSVKIWRRVY 164 (358)
Q Consensus 87 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~ 164 (358)
-|.+.|+.+... -.+++.+++.||.++.|.-.. .-.+.+..+..|...|.+++.+-++.++.+.+. |..++++|+..
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 477777777655 457899999999999998654 223356667789999999999999999999777 99999999865
Q ss_pred cCCcceeeeeecccCCceeEEEEeecCCC---cEEE-EeecCCcEEEEEccCCcCCccccceeecccceeEEE--eeeCC
Q 038537 165 RENSHTLTMTLKFQQSSVNALALSSFFDN---YFLY-SGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAIEK 238 (358)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 238 (358)
-.....+.. ....+ .+.|... .| ..++ +.-.+|.+.++|-.......- ....-|..++.++ .+.+.
T Consensus 86 ~DminmiKL--~~lPg---~a~wv~s-kGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~--~fkklH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 86 FDMINMIKL--VDLPG---FAEWVTS-KGDKISLIAVSLFKSGKIFVVDGFGDFCQDG--YFKKLHFSPVKKIRYNQAGD 157 (558)
T ss_pred cchhhhccc--ccCCC---ceEEecC-CCCeeeeEEeecccCCCcEEECCcCCcCccc--eecccccCceEEEEeecccc
Confidence 432211111 11111 2222210 12 1333 334578999999776332222 2234466666555 45678
Q ss_pred EEEEeeCCCeEEEEEcCCC-c-----eee-----eeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 239 LIFSGSEDTTIRVWRRAEG-G-----CYH-----ECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 239 ~l~~~~~dg~i~iwd~~~~-~-----~~~-----~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
.+++....|.|.-|..... + ..+ ..+..+.......+++.|+|+ +..+.+-+.|..|++++++
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~------g~qistl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD------GAQISTLNPDRKVRGFVFK 231 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc------cCcccccCcccEEEEEEec
Confidence 8899999999999988731 0 000 111222234557789999999 8899999999999999998
Q ss_pred eCC
Q 038537 308 VMP 310 (358)
Q Consensus 308 ~~~ 310 (358)
...
T Consensus 232 tGk 234 (558)
T KOG0882|consen 232 TGK 234 (558)
T ss_pred cch
Confidence 643
No 319
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.66 E-value=0.00011 Score=59.90 Aligned_cols=272 Identities=15% Similarity=0.122 Sum_probs=152.4
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEe----------CCceEEEEecccccccccccccccCCCceeee
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTN----------KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+.+.|.|..+++.+..+...-.+-..++++++.+++++ ..-.|.+||..+........+...+.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R------ 90 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR------ 90 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B------
T ss_pred ceEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch------
Confidence 57999999999988887765555566788888777653 23468999998876655433322100
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEE--ecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTG--SFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
. ........+.++.++++++.. +-..+|.|.|+..++ .+..+.. ..+..+--. ..+-|.+-|.||.
T Consensus 91 -----~--~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k--vv~ei~~--PGC~~iyP~-~~~~F~~lC~DGs 158 (342)
T PF06433_consen 91 -----A--QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK--VVGEIDT--PGCWLIYPS-GNRGFSMLCGDGS 158 (342)
T ss_dssp ---------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE--EEEEEEG--TSEEEEEEE-ETTEEEEEETTSC
T ss_pred -----h--eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCc--eeeeecC--CCEEEEEec-CCCceEEEecCCc
Confidence 0 001122345778899987775 344689999998887 4444431 223333222 2345888899999
Q ss_pred EEEEEceecCCccee-eeeecccCCcee-EEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccce----------ee
Q 038537 157 VKIWRRVYRENSHTL-TMTLKFQQSSVN-ALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF----------LQ 224 (358)
Q Consensus 157 i~~wd~~~~~~~~~~-~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~ 224 (358)
+....+......... ...+.....++. .-++.. .+..++--+.+|.|+--|+..........-. -.
T Consensus 159 l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~--~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~Wr 236 (342)
T PF06433_consen 159 LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR--DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWR 236 (342)
T ss_dssp EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEET--TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEE
T ss_pred eEEEEECCCCCEeEeeccccCCCCcccccccceEC--CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcC
Confidence 999988744333211 112222222222 223332 4555666778898888887763321111000 01
Q ss_pred cccceeEEEeeeCCEEEEee--------CCC--eEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEE
Q 038537 225 GHCFAVLCLVAIEKLIFSGS--------EDT--TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYS 294 (358)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~--------~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s 294 (358)
.......++++..+.|++-- .|+ .|-++|+.++ +.+..+.. ..++.+|+.+.+.. ..+++.
T Consensus 237 PGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~----krv~Ri~l-~~~~~Si~Vsqd~~----P~L~~~ 307 (342)
T PF06433_consen 237 PGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH----KRVARIPL-EHPIDSIAVSQDDK----PLLYAL 307 (342)
T ss_dssp E-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT----EEEEEEEE-EEEESEEEEESSSS-----EEEEE
T ss_pred CcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC----eEEEEEeC-CCccceEEEccCCC----cEEEEE
Confidence 11223456655444444321 122 3777788888 44555532 34678999998743 233344
Q ss_pred ccCCCcEEEEEeeeC
Q 038537 295 SSLDQTFKVWRVKVM 309 (358)
Q Consensus 295 ~~~dg~v~iw~~~~~ 309 (358)
...++.|.+||..+.
T Consensus 308 ~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 308 SAGDGTLDVYDAATG 322 (342)
T ss_dssp ETTTTEEEEEETTT-
T ss_pred cCCCCeEEEEeCcCC
Confidence 557899999999853
No 320
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=5e-06 Score=74.07 Aligned_cols=201 Identities=16% Similarity=0.210 Sum_probs=127.3
Q ss_pred ceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccC-eEEEEEcCCCCEEEEEeCCCc-----EEEEEcee
Q 038537 91 CVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESN-VNAIVVNQDDGFVFTCSSDGS-----VKIWRRVY 164 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~-----i~~wd~~~ 164 (358)
.|+| |++.+..++.|+.+|.|.+.+-.- +.++.++.+... |..+....+.++|++.++|+. +++|++..
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~---~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSF---QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccc---eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 3444 466888999999999998887432 245777777776 555555555578888888765 89999875
Q ss_pred cCCcc--eee---e----eecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe-
Q 038537 165 RENSH--TLT---M----TLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV- 234 (358)
Q Consensus 165 ~~~~~--~~~---~----~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~- 234 (358)
.+... ... . .......++.+++++. +-..+|+|-.+|.|..+.-.-................+|+.+.
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~--~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE--DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEc--cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 52222 222 1 1112356788899987 7889999999999999853321111111111223344555554
Q ss_pred -eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 235 -AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 235 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.++..++-...-..|.+|.+.... .....+..|..+++|.++++. ...+++++ +..|.+|+...
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~gr~---p~~~~ld~~G~~lnCss~~~~------t~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLSGRT---PSLKVLDNNGISLNCSSFSDG------TYQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred ecCCceeEEEEecceeEEEEecCCC---cceeeeccCCccceeeecCCC------CccEEEec-CceEEEEcCCC
Confidence 345542222234569999998542 124457778889999999987 33344444 34799998874
No 321
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=3.8e-08 Score=87.38 Aligned_cols=199 Identities=17% Similarity=0.165 Sum_probs=135.1
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC--c
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG--S 156 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~ 156 (358)
|..-.++..|....+|++|+-..+.|+.|+..|.|+++++.++. .......|.++|+-+.-+.+|..+++.+.-. -
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~--~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS--MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc--ccccccccccccccccccCCcceeeeeccccCch
Confidence 44445778899999999999999999999999999999999998 6777889999999999998998877766543 3
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec--ccceeEEEe
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG--HCFAVLCLV 234 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~ 234 (358)
..+|++... ...... -..-.++.|+. ....-+.|.......+||+.+.....++.....+ .......|+
T Consensus 1169 saLW~~~s~---~~~~Hs----f~ed~~vkFsn--~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1169 SALWDASST---GGPRHS----FDEDKAVKFSN--SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred HHHhccccc---cCcccc----ccccceeehhh--hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence 678987531 111221 23446777875 2333344445567899999986544443222221 223456677
Q ss_pred eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 235 AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 235 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
|+..+++ .|| .+||++.. +.+..+......+ .=.|+|. |..++.-++ |||+++.
T Consensus 1240 P~D~LIl---ndG--vLWDvR~~----~aIh~FD~ft~~~-~G~FHP~------g~eVIINSE-----IwD~RTF 1293 (1516)
T KOG1832|consen 1240 PCDTLIL---NDG--VLWDVRIP----EAIHRFDQFTDYG-GGGFHPS------GNEVIINSE-----IWDMRTF 1293 (1516)
T ss_pred CCcceEe---eCc--eeeeeccH----HHHhhhhhheecc-cccccCC------CceEEeech-----hhhhHHH
Confidence 7777765 355 37999987 3344444333222 2258998 667776665 8998864
No 322
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.63 E-value=7.2e-05 Score=60.18 Aligned_cols=225 Identities=13% Similarity=0.140 Sum_probs=134.3
Q ss_pred CCEEEEEeCCce-EEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec-----CCe
Q 038537 39 DNMLFTTNKDCK-IRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF-----DKT 112 (358)
Q Consensus 39 ~~~l~s~~~dg~-i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----dg~ 112 (358)
+..++.+-.-|+ ..+||..+++....... ....-+.+| -.|+++|++|++.-. .|.
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a------------~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWA------------PPGRHFYGH------GVFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcC------------CCCCEEecC------EEEcCCCCEEEEeccccCCCcEE
Confidence 446666666664 66888888776542211 122234566 679999999998643 489
Q ss_pred EEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC------------------CCcEEEEEceecCCcceeeee
Q 038537 113 VKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS------------------DGSVKIWRRVYRENSHTLTMT 174 (358)
Q Consensus 113 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~~wd~~~~~~~~~~~~~ 174 (358)
|-|||.. ..+..+..+..|.-.-..+.+.||++.|+++-. +-.+.+.|..+++...+....
T Consensus 79 IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp 157 (305)
T PF07433_consen 79 IGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELP 157 (305)
T ss_pred EEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecC
Confidence 9999998 333477788777777788999999987777632 123444444444433333222
Q ss_pred ecccCCceeEEEEeecCCCcEEEEeecCCc-------EEEEEccCCcCCccc----cceeecccceeEEEeeeCCEEEEe
Q 038537 175 LKFQQSSVNALALSSFFDNYFLYSGSSDGS-------INFWEKDKMSGGFNH----GGFLQGHCFAVLCLVAIEKLIFSG 243 (358)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~ 243 (358)
...|..+|..+++.+ ++..++..-..|. +.+++....-..... ...+ .+-...++++.++.++++.
T Consensus 158 ~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l-~~Y~gSIa~~~~g~~ia~t 234 (305)
T PF07433_consen 158 PDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRL-NGYIGSIAADRDGRLIAVT 234 (305)
T ss_pred ccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhh-CCceEEEEEeCCCCEEEEE
Confidence 245777899999987 6655554433332 334433321100000 0111 1223345666677777555
Q ss_pred e-CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 244 S-EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 244 ~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
+ .-+.+.+||..++ +.+... .-..+..++-.++ + +++|.+..
T Consensus 235 sPrGg~~~~~d~~tg----~~~~~~--~l~D~cGva~~~~------~-f~~ssG~G 277 (305)
T PF07433_consen 235 SPRGGRVAVWDAATG----RLLGSV--PLPDACGVAPTDD------G-FLVSSGQG 277 (305)
T ss_pred CCCCCEEEEEECCCC----CEeecc--ccCceeeeeecCC------c-eEEeCCCc
Confidence 4 6788999999998 344433 2235677777776 4 66666554
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.62 E-value=8.2e-05 Score=57.39 Aligned_cols=100 Identities=15% Similarity=0.043 Sum_probs=68.2
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeee-eecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFI-KARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~-~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
+++.|+..|.+.--|..++.....- -+.+-...++. -+++++.|...|.+++.+..++...+.+.....
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~--------- 94 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET--------- 94 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh---------
Confidence 3567777888887888777654332 12111122222 577899999999999999999977665443221
Q ss_pred cCCCccccCCCceEE-EEEeCCCCEEEEEecCCeEEEEEccCCc
Q 038537 80 SKSNTQQQHRDCVSC-MAFYHAEGLLYTGSFDKTVKAWRVLDKR 122 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 122 (358)
|.+ ....+++..+..|+.|+..+..|.++..
T Consensus 95 ------------vk~~a~~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 95 ------------VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred ------------hccceEEcCCCceEEEecCCCcEEEecccccc
Confidence 211 2335688999999999999999988765
No 324
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.61 E-value=1.7e-05 Score=61.87 Aligned_cols=188 Identities=12% Similarity=0.124 Sum_probs=103.0
Q ss_pred EecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCC------CEEEEEec
Q 038537 36 LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAE------GLLYTGSF 109 (358)
Q Consensus 36 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------~~l~~~~~ 109 (358)
++++..||.+...|+|+++|+..............+ ..-...|..+.|.+.. ..|++-..
T Consensus 52 SpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~--------------~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y 117 (282)
T PF15492_consen 52 SPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFP--------------GDLSDAIAGLIFLEYKKSAQWSYELLVINY 117 (282)
T ss_pred CCCCcEEEEEcCCCeEEEEecccceeEEcCcccccC--------------CccccceeeeEeeccccccccceeEEEEec
Confidence 457889999999999999999875543222211111 1234567777775421 25666778
Q ss_pred CCeEEEEEccCC---ccccccccc---ccccCeEEEEEcCCCCEEEEEeCCCc-----------EEEEEceecCCcceee
Q 038537 110 DKTVKAWRVLDK---RCTCVDSFV---AHESNVNAIVVNQDDGFVFTCSSDGS-----------VKIWRRVYRENSHTLT 172 (358)
Q Consensus 110 dg~i~iwd~~~~---~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~-----------i~~wd~~~~~~~~~~~ 172 (358)
+|.++-|-+..+ .....+.+. .+...|.++.++|..++|++|+.... +..|.+-.+..-.+.
T Consensus 118 ~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~- 196 (282)
T PF15492_consen 118 RGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ- 196 (282)
T ss_pred cceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE-
Confidence 888888876432 222223322 23568999999999888887765322 223332211111100
Q ss_pred eeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEE
Q 038537 173 MTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVW 252 (358)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iw 252 (358)
+.. .+...-......+..++-.++- .............++++|++..|++...+|.|.+|
T Consensus 197 --------------v~~-~~~~~~~~~~~~~~~~~~~~~~-----fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW 256 (282)
T PF15492_consen 197 --------------VTS-SEDDITASSKRRGLLRIPSFKF-----FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLW 256 (282)
T ss_pred --------------ccc-cCccccccccccceeeccceee-----eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEE
Confidence 000 0111111111112112111110 00000112233447889999999999999999999
Q ss_pred EcCCCc
Q 038537 253 RRAEGG 258 (358)
Q Consensus 253 d~~~~~ 258 (358)
++.+-.
T Consensus 257 ~iPsL~ 262 (282)
T PF15492_consen 257 EIPSLR 262 (282)
T ss_pred ecCcch
Confidence 998863
No 325
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=4.9e-08 Score=86.70 Aligned_cols=199 Identities=13% Similarity=0.076 Sum_probs=136.7
Q ss_pred ceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEE
Q 038537 19 CVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMA 96 (358)
Q Consensus 19 ~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 96 (358)
.+....+..|...-+|++| ..++|+.|+..|.|+++++.++.... ...+|..+|+-+.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~--------------------s~ncH~SavT~ve 1150 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE--------------------SVNCHQSAVTLVE 1150 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc--------------------ccccccccccccc
Confidence 3455677788888888887 46799999999999999999886543 3368999999999
Q ss_pred EeCCCCEEEEEecCC--eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeee
Q 038537 97 FYHAEGLLYTGSFDK--TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMT 174 (358)
Q Consensus 97 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 174 (358)
-+.+|..+++.+.-. ...+|++.. .....+++. .-.++.|+.....-+.|+......+||+.++....++...
T Consensus 1151 Ps~dgs~~Ltsss~S~PlsaLW~~~s-~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~ 1225 (1516)
T KOG1832|consen 1151 PSVDGSTQLTSSSSSSPLSALWDASS-TGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTD 1225 (1516)
T ss_pred ccCCcceeeeeccccCchHHHhcccc-ccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCc
Confidence 999998777654433 467899865 222455553 3467888876665666777678999999888766554333
Q ss_pred ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEc
Q 038537 175 LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRR 254 (358)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 254 (358)
....+..-++..|+| ...+++ .|| .+||.+..+....+.. +. ...--.|+|+|.-++.-++ |||+
T Consensus 1226 ~~~~~y~~n~a~FsP--~D~LIl---ndG--vLWDvR~~~aIh~FD~-ft--~~~~G~FHP~g~eVIINSE-----IwD~ 1290 (1516)
T KOG1832|consen 1226 TVTSSYSNNLAHFSP--CDTLIL---NDG--VLWDVRIPEAIHRFDQ-FT--DYGGGGFHPSGNEVIINSE-----IWDM 1290 (1516)
T ss_pred chhhhhhccccccCC--CcceEe---eCc--eeeeeccHHHHhhhhh-he--ecccccccCCCceEEeech-----hhhh
Confidence 333334447788888 665554 345 6899998533222211 11 1112357888888888764 8999
Q ss_pred CCC
Q 038537 255 AEG 257 (358)
Q Consensus 255 ~~~ 257 (358)
++-
T Consensus 1291 RTF 1293 (1516)
T KOG1832|consen 1291 RTF 1293 (1516)
T ss_pred HHH
Confidence 885
No 326
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.59 E-value=1e-05 Score=74.93 Aligned_cols=205 Identities=10% Similarity=0.074 Sum_probs=134.1
Q ss_pred CCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc----ee
Q 038537 89 RDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRR----VY 164 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~----~~ 164 (358)
.+.|.++.|..+...++.+..+|.|.+-|..+..+..+.. -...|.+++|+||++.++..+..+++.+-.- -.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~---vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN---VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeee---ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence 3689999999999999999999999999988877444433 3678999999999999999988888776532 11
Q ss_pred cCCc-------cee--------eeeecc---------------------cCCceeEEEEeecCCCcEEEEee-----cCC
Q 038537 165 RENS-------HTL--------TMTLKF---------------------QQSSVNALALSSFFDNYFLYSGS-----SDG 203 (358)
Q Consensus 165 ~~~~-------~~~--------~~~~~~---------------------~~~~i~~~~~~~~~~~~~l~~~~-----~dg 203 (358)
.+.. .+. ...+.+ ....=+.+.|-. +|.++++.. ..+
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg--Dg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG--DGEYFAVSFVESETGTR 222 (1265)
T ss_pred ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc--CCcEEEEEEEeccCCce
Confidence 1000 000 000110 011223466765 898998832 237
Q ss_pred cEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEee---CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEee
Q 038537 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGS---EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAAS 280 (358)
Q Consensus 204 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~ 280 (358)
.|++||.+. . ...............++-|.|..+++-. .|+.|.+|.-+.... .+....+.....+|..++|+
T Consensus 223 kirV~drEg-~--Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h-g~f~l~~p~de~~ve~L~Wn 298 (1265)
T KOG1920|consen 223 KIRVYDREG-A--LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH-GEFVLPFPLDEKEVEELAWN 298 (1265)
T ss_pred eEEEecccc-h--hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc-cccccCCcccccchheeeec
Confidence 999999772 1 1222222233345577778888888754 566799998654321 12222333344459999999
Q ss_pred cccceeeeCeEEEE---ccCCCcEEEEEeee
Q 038537 281 LEMEKVVMGFLVYS---SSLDQTFKVWRVKV 308 (358)
Q Consensus 281 ~~~~~~~~~~~l~s---~~~dg~v~iw~~~~ 308 (358)
.+ +..|+. ......|++|-+.+
T Consensus 299 s~------sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 299 SN------SDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CC------CCceeeeecccccceEEEEEecC
Confidence 99 778887 55555699998876
No 327
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.53 E-value=5.4e-05 Score=67.25 Aligned_cols=247 Identities=11% Similarity=0.104 Sum_probs=132.3
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccc-----eE-EEEecCCEEEEEe---------CCceEEEEeccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGE-----VR-AILAHDNMLFTTN---------KDCKIRIWNFTVSDNFRTKK 66 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~-----v~-~i~~~~~~l~s~~---------~dg~i~iw~~~~~~~~~~~~ 66 (358)
++.++.+|.|.-+|..+++.+..+...... +. +....+..++.++ .+|.+..+|..+++......
T Consensus 113 V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 113 VFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred EEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEee
Confidence 567788999999999999988776543321 11 1223445666654 36789999999998877654
Q ss_pred ccccCCCceeeeecCCCccccCC-Cce-EEEEEeCCCCEEEEEecCC------------------eEEEEEccCCccccc
Q 038537 67 VTTLPRRSSFLSFSKSNTQQQHR-DCV-SCMAFYHAEGLLYTGSFDK------------------TVKAWRVLDKRCTCV 126 (358)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~h~-~~v-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~ 126 (358)
...... ..............+. ..+ ...++.+.+..++.++.++ .|.-+|..+++..-.
T Consensus 193 ~~~~~~-~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~ 271 (488)
T cd00216 193 TTEPDP-NAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWF 271 (488)
T ss_pred ccCCCc-CCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEE
Confidence 421100 0000000000000011 111 1244555566777776554 788889988873222
Q ss_pred ccccccc--------cCe-EEEEEcCCCC---EEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCc
Q 038537 127 DSFVAHE--------SNV-NAIVVNQDDG---FVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNY 194 (358)
Q Consensus 127 ~~~~~~~--------~~v-~~~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 194 (358)
.....+. .++ ..+. .-++. .+++++.+|.+...|.++++...+..... ..++..| .
T Consensus 272 ~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-------~~~~~~~----~ 339 (488)
T cd00216 272 YQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-------QPMAYDP----G 339 (488)
T ss_pred eeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-------cccccCC----c
Confidence 2211121 111 1111 01233 67888899999999999888766543220 0111111 1
Q ss_pred EEEE------------------eecCCcEEEEEccCCcCCccccceee------cccceeEEEeeeCCEEEEeeCCCeEE
Q 038537 195 FLYS------------------GSSDGSINFWEKDKMSGGFNHGGFLQ------GHCFAVLCLVAIEKLIFSGSEDTTIR 250 (358)
Q Consensus 195 ~l~~------------------~~~dg~i~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~dg~i~ 250 (358)
.++. ...+|.+.-.|+.+++...+...... +.......+...+..|++++.||.|+
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ 419 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFR 419 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEE
Confidence 1221 12356677777776554433321100 00000112234578899999999999
Q ss_pred EEEcCCCceee
Q 038537 251 VWRRAEGGCYH 261 (358)
Q Consensus 251 iwd~~~~~~~~ 261 (358)
.+|..+++..+
T Consensus 420 ald~~tG~~lW 430 (488)
T cd00216 420 AFDATTGKELW 430 (488)
T ss_pred EEECCCCceee
Confidence 99999996533
No 328
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.50 E-value=5.3e-08 Score=83.40 Aligned_cols=193 Identities=15% Similarity=0.191 Sum_probs=124.8
Q ss_pred CEEeeeCCCcEEEEeCCCcee--eeeeeecccceEEEEec---CCEEEEEe----CCceEEEEecccccccccccccccC
Q 038537 1 MVFTGSSSTRIRVWRQPDCVE--RGFIKARHGEVRAILAH---DNMLFTTN----KDCKIRIWNFTVSDNFRTKKVTTLP 71 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~--~~~~~~h~~~v~~i~~~---~~~l~s~~----~dg~i~iw~~~~~~~~~~~~~~~~~ 71 (358)
++++|..+|.|-+-.+....- .....+|...+++++++ .+.||+|- .|..+.|||+.+.-........
T Consensus 72 IlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~--- 148 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL--- 148 (783)
T ss_pred hhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccc---
Confidence 467899999999987754332 24456778888999884 46777773 4677999999876331111000
Q ss_pred CCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEE
Q 038537 72 RRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFT 150 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 150 (358)
+. .+.......++|..+.+++.+|.....+.++|++... .....-.+..+..+..+| .++++++
T Consensus 149 -------fs-----~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~---~~~~svnTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 149 -------FS-----SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL---DSVSSVNTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred -------cc-----cccccCccccccccCcchhhcccccchhhhhhhhhhh---hhhhhhhhhhcccceecCCCCCceec
Confidence 00 1123345588898888999999999999999997432 122222345677888888 7777776
Q ss_pred EeCCCcEEEEE-ceecCCcc-eeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 151 CSSDGSVKIWR-RVYRENSH-TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 151 ~~~dg~i~~wd-~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
-. ||.|.+|| .+.-+... .+..........+..++|+|...|...+..-..++|++||+..
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 55 99999999 33222111 1111111123458999999966554444444567899999875
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=8e-06 Score=72.82 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=61.3
Q ss_pred eEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEce
Q 038537 92 VSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRV 163 (358)
Q Consensus 92 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 163 (358)
+++++|+|..-.|+.|=.-|.+.+|...+.+ .-.....|..+|..+.|+++|..++++..-|.+.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e--~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE--THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCce--eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 5679999998888998888999999988776 344455799999999999999999999999999999865
No 330
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.48 E-value=4.4e-05 Score=69.75 Aligned_cols=139 Identities=12% Similarity=0.120 Sum_probs=100.4
Q ss_pred eeeCCCcEEEEeCCCceeeeeeeecccc-eEEEEec-------CCEEEEEeCCceEEEEeccccc--ccccccccccCCC
Q 038537 4 TGSSSTRIRVWRQPDCVERGFIKARHGE-VRAILAH-------DNMLFTTNKDCKIRIWNFTVSD--NFRTKKVTTLPRR 73 (358)
Q Consensus 4 tg~~dg~v~vw~~~~~~~~~~~~~h~~~-v~~i~~~-------~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~ 73 (358)
.......|+-.|++.|+.+.....|... |..+.++ +...+.|-.+..+..||.+-.. .+....
T Consensus 499 ~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~------- 571 (794)
T PF08553_consen 499 DPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS------- 571 (794)
T ss_pred cCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc-------
Confidence 3345677889999999999999988754 8888763 4466778888899999987432 111000
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS 153 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 153 (358)
.. .......+|++-+.+| +||.|+.+|.||+||-...+ ....+.+...+|..|..+.||+++++.+
T Consensus 572 ---------k~-Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~--AKT~lp~lG~pI~~iDvt~DGkwilaTc- 637 (794)
T PF08553_consen 572 ---------KQ-YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKR--AKTALPGLGDPIIGIDVTADGKWILATC- 637 (794)
T ss_pred ---------cc-cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchh--hhhcCCCCCCCeeEEEecCCCcEEEEee-
Confidence 01 1344557888877665 69999999999999954332 4455667789999999999999988766
Q ss_pred CCcEEEEEce
Q 038537 154 DGSVKIWRRV 163 (358)
Q Consensus 154 dg~i~~wd~~ 163 (358)
+..+.+++..
T Consensus 638 ~tyLlLi~t~ 647 (794)
T PF08553_consen 638 KTYLLLIDTL 647 (794)
T ss_pred cceEEEEEEe
Confidence 4567777753
No 331
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.37 E-value=0.00023 Score=60.79 Aligned_cols=221 Identities=14% Similarity=0.108 Sum_probs=117.2
Q ss_pred ceEEEEEeCCCCEEEEEecCCeEEEEEccCCccc-----------------------------------------ccccc
Q 038537 91 CVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCT-----------------------------------------CVDSF 129 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-----------------------------------------~~~~~ 129 (358)
.|+.+.|.++...|++|...|.|.+|.....+.. +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 3889999999999999999999999976432210 00011
Q ss_pred cccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeee----ecccCCceeEEEEeec---CCC---cEEEEe
Q 038537 130 VAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMT----LKFQQSSVNALALSSF---FDN---YFLYSG 199 (358)
Q Consensus 130 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~---~~~---~~l~~~ 199 (358)
....++|++++.+ |=.+++.|+++|.+.|.|+|........... .......++++.|... .|+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2235789999987 6669999999999999999644322221110 1123456778887632 222 578999
Q ss_pred ecCCcEEEEEccC-CcCCccc--cceeecccceeEEEee---e-----------------C---CEEEEeeCCCeEEEEE
Q 038537 200 SSDGSINFWEKDK-MSGGFNH--GGFLQGHCFAVLCLVA---I-----------------E---KLIFSGSEDTTIRVWR 253 (358)
Q Consensus 200 ~~dg~i~i~d~~~-~~~~~~~--~~~~~~~~~~~~~~~~---~-----------------~---~~l~~~~~dg~i~iwd 253 (358)
...|.+.+|.+.- ....+.. ......+...+..+.+ + + +-++....+..++++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 9999999998752 2221211 1111123333333322 0 0 1233334466799999
Q ss_pred cCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceee
Q 038537 254 RAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMC 317 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 317 (358)
..+.+. .............+.+-+-.. ...+..|++-..+|.|+++.+..+++.....+
T Consensus 242 ~~~~k~----~~K~~~~~~~~~~~~vv~~~~-~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 242 PPKSKG----AHKSFDDPFLCSSASVVPTIS-RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp TT---E----EEEE-SS-EEEEEEEEEEEE--EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred CCCCcc----cceeeccccccceEEEEeecc-cCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 988743 222222222333444432100 00167889999999999999987665544444
No 332
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.32 E-value=3.8e-06 Score=71.98 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=63.5
Q ss_pred cCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceec
Q 038537 87 QHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYR 165 (358)
Q Consensus 87 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 165 (358)
.....|.|++++|+...|+.|+.||+|.+||...+. ..+....-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~----t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV----TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe----eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 466779999999999999999999999999987664 222234556789999999999999999999999998544
No 333
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=1.2e-06 Score=65.84 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=92.6
Q ss_pred EEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecc
Q 038537 147 FVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGH 226 (358)
Q Consensus 147 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 226 (358)
.+..-+.||.|+-++++..+..... ...+... ..+ + .-+..+++|+.+|.|++|...... .+.......
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rs---e~~~~e~-~~v---~-~~~~~~~vG~~dg~v~~~n~n~~g---~~~d~~~s~ 100 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRS---ERFIDEG-QRV---V-TASAKLMVGTSDGAVYVFNWNLEG---AHSDRVCSG 100 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhh---hhhhhcc-eee---c-ccCceEEeecccceEEEecCCccc---hHHHhhhcc
Confidence 3455567888888877543221111 1111111 111 1 145679999999999999877311 111112222
Q ss_pred cceeEEEeee---CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcc-cceEEEEeecccceeeeCeEEEEc--cCCCc
Q 038537 227 CFAVLCLVAI---EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHR-GPVRCLAASLEMEKVVMGFLVYSS--SLDQT 300 (358)
Q Consensus 227 ~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~~~~~~~~~~l~s~--~~dg~ 300 (358)
...+.+.-|. +.+..+++.||.||.|++... +.+.....|. .++.....+.. +++++.+ |.|..
T Consensus 101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~----k~~g~~g~h~~~~~e~~ivv~s------d~~i~~a~~S~d~~ 170 (238)
T KOG2444|consen 101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN----KVLGYVGQHNFESGEELIVVGS------DEFLKIADTSHDRV 170 (238)
T ss_pred cccceeccccccccceeEEeccCCceeeeccccC----ceeeeeccccCCCcceeEEecC------CceEEeeccccchh
Confidence 2334444443 458889999999999999887 4566666676 56666666665 6788888 88999
Q ss_pred EEEEEeeeCCCCccee
Q 038537 301 FKVWRVKVMPDQEKTM 316 (358)
Q Consensus 301 v~iw~~~~~~~~~~~~ 316 (358)
++.|++....+.....
T Consensus 171 ~k~W~ve~~~d~~~i~ 186 (238)
T KOG2444|consen 171 LKKWNVEKIKDESPIS 186 (238)
T ss_pred hhhcchhhhhccCcch
Confidence 9999998765544433
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.32 E-value=0.00069 Score=60.04 Aligned_cols=76 Identities=11% Similarity=0.065 Sum_probs=51.9
Q ss_pred CCceeEEEEeecCCCcEEEEeec-CCcEEEEEccCCcCCc----cc----ccee-ecccceeEEEeeeCCEEEEeeCCCe
Q 038537 179 QSSVNALALSSFFDNYFLYSGSS-DGSINFWEKDKMSGGF----NH----GGFL-QGHCFAVLCLVAIEKLIFSGSEDTT 248 (358)
Q Consensus 179 ~~~i~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~----~~----~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~ 248 (358)
......+.++| |++++++++. +..+.++|+.+....+ .. .... .+..-.-+.|..+|+...+---|..
T Consensus 320 GKsPHGV~vSP--DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSP--DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECC--CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecce
Confidence 45678889998 8888776655 8999999998844211 00 1111 1222223667777888888889999
Q ss_pred EEEEEcCC
Q 038537 249 IRVWRRAE 256 (358)
Q Consensus 249 i~iwd~~~ 256 (358)
|..|++..
T Consensus 398 v~kwn~~~ 405 (635)
T PRK02888 398 IVKWNIEA 405 (635)
T ss_pred eEEEehHH
Confidence 99999876
No 335
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.32 E-value=1.1e-05 Score=70.51 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=111.3
Q ss_pred CCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCC
Q 038537 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYREN 167 (358)
Q Consensus 88 h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 167 (358)
|...|.--++...+++++.|+..|.+.+|+-..+.+ ......+..+.+..++.+++..++++|+..|.|.++.+.....
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC
Confidence 344455555666889999999999999999877763 2222223455667778888999999999999999998876433
Q ss_pred cceeee--eecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeC
Q 038537 168 SHTLTM--TLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSE 245 (358)
Q Consensus 168 ~~~~~~--~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 245 (358)
...... ..+.|...|++++|++ ++..+++|...|+|.+-.+............+......|+.++.-..+|+.++-
T Consensus 111 ~~~~~~t~~d~~~~~rVTal~Ws~--~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl 188 (726)
T KOG3621|consen 111 RDLDYVTPCDKSHKCRVTALEWSK--NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTL 188 (726)
T ss_pred CcceeeccccccCCceEEEEEecc--cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhh
Confidence 222222 1233678999999998 999999999999999988876211112222344455667777765555555544
Q ss_pred CCeEEEEEcCC
Q 038537 246 DTTIRVWRRAE 256 (358)
Q Consensus 246 dg~i~iwd~~~ 256 (358)
-..+ ++++..
T Consensus 189 ~r~~-Lc~tE~ 198 (726)
T KOG3621|consen 189 TRCI-LCQTEA 198 (726)
T ss_pred hhhh-eeecch
Confidence 3333 344443
No 336
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.3e-05 Score=63.88 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=70.8
Q ss_pred ecCCCccccCCCceEEEEEeCCCC-EEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC-CCEEEEEeCCCc
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEG-LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD-DGFVFTCSSDGS 156 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 156 (358)
++....+.+|...|..++|+|... ++..++.+..|+|.|+++.. .+..+..+ ..+++++|.-+ .++|.+|..+|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce--eeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 333445678889999999999766 78889999999999999887 66677666 78999999875 457888889999
Q ss_pred EEEEEceecCC
Q 038537 157 VKIWRRVYREN 167 (358)
Q Consensus 157 i~~wd~~~~~~ 167 (358)
|.+||++..+.
T Consensus 260 VlvyD~R~~~~ 270 (463)
T KOG1645|consen 260 VLVYDMRQPEG 270 (463)
T ss_pred EEEEEccCCCc
Confidence 99999986543
No 337
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.30 E-value=0.00073 Score=54.58 Aligned_cols=179 Identities=12% Similarity=0.130 Sum_probs=110.8
Q ss_pred EEEEeCCCceeeeeeeecccceE----EEEecCCEEEEE-----eCCceEEEEeccc-ccccccccccccCCCceeeeec
Q 038537 11 IRVWRQPDCVERGFIKARHGEVR----AILAHDNMLFTT-----NKDCKIRIWNFTV-SDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 11 v~vw~~~~~~~~~~~~~h~~~v~----~i~~~~~~l~s~-----~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
..+||..+++....+....+.-. .++.+|++|++. ...|.|-|||... .+.+.
T Consensus 30 ~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~----------------- 92 (305)
T PF07433_consen 30 ALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIG----------------- 92 (305)
T ss_pred EEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEe-----------------
Confidence 56789988888776655443332 556788988886 3468899999982 22222
Q ss_pred CCCccccCCCceEEEEEeCCCCEEEEEe------------------cCCeEEEEEccCCcccccccc--cccccCeEEEE
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGLLYTGS------------------FDKTVKAWRVLDKRCTCVDSF--VAHESNVNAIV 140 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~ 140 (358)
.+..|.-.-..+.+.|+++.|+.+. .+..+...|..+++......+ ..|.-.|..++
T Consensus 93 ---E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa 169 (305)
T PF07433_consen 93 ---EFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLA 169 (305)
T ss_pred ---EecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEE
Confidence 2234444456677888887776652 123455666677763333334 34677899999
Q ss_pred EcCCCCEEEEEeCCCc-------EEEEEceecCCcceee---eeecccCCceeEEEEeecCCCcEEE-EeecCCcEEEEE
Q 038537 141 VNQDDGFVFTCSSDGS-------VKIWRRVYRENSHTLT---MTLKFQQSSVNALALSSFFDNYFLY-SGSSDGSINFWE 209 (358)
Q Consensus 141 ~~~~~~~l~~~~~dg~-------i~~wd~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~dg~i~i~d 209 (358)
+.++|..++..-..|. |-+++. ++....+. .........+-+++++. ++..++ ++=..+.+.+||
T Consensus 170 ~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~--~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 170 VDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADR--DGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred ecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeC--CCCEEEEECCCCCEEEEEE
Confidence 9999877666655443 223322 11111110 01123457889999997 777665 455578899999
Q ss_pred ccCC
Q 038537 210 KDKM 213 (358)
Q Consensus 210 ~~~~ 213 (358)
..++
T Consensus 246 ~~tg 249 (305)
T PF07433_consen 246 AATG 249 (305)
T ss_pred CCCC
Confidence 8874
No 338
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.27 E-value=0.0022 Score=55.62 Aligned_cols=69 Identities=14% Similarity=0.160 Sum_probs=56.0
Q ss_pred ceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 228 FAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
..+.+.+|+...++.|+.||.|.+||...+. .....+.-..+.++|+|+ |.++++|+.-|.+.+||+-
T Consensus 262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~------t~~~ka~~~P~~iaWHp~------gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCEDGSIILYDTTRGV------TLLAKAEFIPTLIAWHPD------GAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ceEEecCcccceEEEEecCCeEEEEEcCCCe------eeeeeecccceEEEEcCC------CcEEEEEcCCceEEEEEee
Confidence 3445567788999999999999999998762 222234456789999999 8899999999999999986
Q ss_pred e
Q 038537 308 V 308 (358)
Q Consensus 308 ~ 308 (358)
-
T Consensus 330 L 330 (545)
T PF11768_consen 330 L 330 (545)
T ss_pred c
Confidence 4
No 339
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.00014 Score=65.39 Aligned_cols=109 Identities=13% Similarity=0.184 Sum_probs=83.1
Q ss_pred EEEEEeCCCCEEEEEec----CCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCc
Q 038537 93 SCMAFYHAEGLLYTGSF----DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENS 168 (358)
Q Consensus 93 ~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 168 (358)
+-.+|+|...+++.++. .|.|.||- ++++...-.+. .-.+++++|+|..-.|+.|-.-|.+.+|...+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~---P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~--- 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY---PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT--- 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc---ceehhhhccChHHHHHhhccccceeEEEecCCc---
Confidence 44689999998888764 47888885 44541122222 234677999999888999999999999987433
Q ss_pred ceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEcc
Q 038537 169 HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKD 211 (358)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 211 (358)
+.......|..+|..+.|++ +|..++++..-|.+.+|...
T Consensus 92 -e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 92 -ETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -eeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEee
Confidence 33344456899999999999 99999999999999999876
No 340
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.14 E-value=0.00057 Score=61.60 Aligned_cols=227 Identities=15% Similarity=0.191 Sum_probs=127.1
Q ss_pred EEeeeCC------CcEEEEeCCCceee--eeeeecccceEEEEecCCEEEEEeCC-c-----eEEEEecccccccccccc
Q 038537 2 VFTGSSS------TRIRVWRQPDCVER--GFIKARHGEVRAILAHDNMLFTTNKD-C-----KIRIWNFTVSDNFRTKKV 67 (358)
Q Consensus 2 l~tg~~d------g~v~vw~~~~~~~~--~~~~~h~~~v~~i~~~~~~l~s~~~d-g-----~i~iw~~~~~~~~~~~~~ 67 (358)
++.|+.+ ..+..+|..+++.. ..+............++...++||.| | .+..||....+ +.. .
T Consensus 288 ~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~-~ 364 (571)
T KOG4441|consen 288 VAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTP-V 364 (571)
T ss_pred EEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc--eec-c
Confidence 4566666 36778888766332 23333333344445577888899988 2 45666766554 211 1
Q ss_pred cccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCC-----eEEEEEccCCcccccccccccccCeEEEEEc
Q 038537 68 TTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDK-----TVKAWRVLDKRCTCVDSFVAHESNVNAIVVN 142 (358)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (358)
.. +...........+ +|...+.|+.|| ++-.||..+.++..+..+.........+.+
T Consensus 365 a~---------------M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~- 426 (571)
T KOG4441|consen 365 AP---------------MNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL- 426 (571)
T ss_pred CC---------------ccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE-
Confidence 11 1111111222222 678888999886 477899988887666655432222222333
Q ss_pred CCCCEEEEEeCCC------cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCc-----EEEEEcc
Q 038537 143 QDDGFVFTCSSDG------SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGS-----INFWEKD 211 (358)
Q Consensus 143 ~~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~-----i~i~d~~ 211 (358)
++...++|+.++ ++..||..++. +.....+...... ..++.. ++.+++.|+.|+. |..||..
T Consensus 427 -~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~-~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 427 -GGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSG-FGVAVL---NGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred -CCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCccccccc-ceEEEE---CCEEEEECCccCCCccceEEEEcCC
Confidence 677888888654 46677776543 2222222211222 223333 7888999988873 6778877
Q ss_pred CCcCCccccceeecccceeEEEeeeCCEEEEeeCCCe-----EEEEEcCCCc
Q 038537 212 KMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTT-----IRVWRRAEGG 258 (358)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~ 258 (358)
+.. ......+......+-....++...++|+.||. |..||..+.+
T Consensus 500 ~~~--W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 500 TNQ--WTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CCc--eeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 733 33333233333333344556778888887764 6666666653
No 341
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.12 E-value=0.0057 Score=54.87 Aligned_cols=165 Identities=10% Similarity=0.060 Sum_probs=91.6
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeec--cc--ceEE-EEecCCEEEEEeC------CceEEEEeccccccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKAR--HG--EVRA-ILAHDNMLFTTNK------DCKIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h--~~--~v~~-i~~~~~~l~s~~~------dg~i~iw~~~~~~~~~~~~~~~~ 70 (358)
|+.++.|+.|.-.|..+++.+...... .. .+.+ -...++.++.+.. +|.|..+|..+++.+........
T Consensus 123 v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~ 202 (527)
T TIGR03075 123 VFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPG 202 (527)
T ss_pred EEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCC
Confidence 567788999999999999987665421 11 1211 1123445555542 68999999999998876554321
Q ss_pred CCC------------ceeeeecCCCccccCCCceE-EEEEeCCCCEEEEEecC-----C-----------eEEEEEccCC
Q 038537 71 PRR------------SSFLSFSKSNTQQQHRDCVS-CMAFYHAEGLLYTGSFD-----K-----------TVKAWRVLDK 121 (358)
Q Consensus 71 ~~~------------~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~d-----g-----------~i~iwd~~~~ 121 (358)
... ...-.+.. .....-...++ .+++.|+..+++.+..+ + .|.-.|++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~tw~~-~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG 281 (527)
T TIGR03075 203 DMGYLDKADKPVGGEPGAKTWPG-DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG 281 (527)
T ss_pred CcccccccccccccccccCCCCC-CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC
Confidence 100 00000000 00011111222 44666666666665421 2 6777788888
Q ss_pred ccccccccccccc-------CeEEEEEcCCCC---EEEEEeCCCcEEEEEceecCC
Q 038537 122 RCTCVDSFVAHES-------NVNAIVVNQDDG---FVFTCSSDGSVKIWRRVYREN 167 (358)
Q Consensus 122 ~~~~~~~~~~~~~-------~v~~~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~ 167 (358)
+..-......|.. ...-+.+..+++ .++.+..+|.+.+.|.++++.
T Consensus 282 ~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 282 KIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred CEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 8332222223321 112223334565 788999999999999988765
No 342
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.10 E-value=0.0018 Score=54.45 Aligned_cols=183 Identities=12% Similarity=0.123 Sum_probs=107.9
Q ss_pred CeEEEEEccCCcccccccccccccCeEEEE---EcCC----CCEEEEEeC---------C-CcEEEEEceec-CCcceee
Q 038537 111 KTVKAWRVLDKRCTCVDSFVAHESNVNAIV---VNQD----DGFVFTCSS---------D-GSVKIWRRVYR-ENSHTLT 172 (358)
Q Consensus 111 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~---~~~~----~~~l~~~~~---------d-g~i~~wd~~~~-~~~~~~~ 172 (358)
..|++.|..+.+......+.. ...+.+++ +..+ ..+|++|+. . |.|.++++... ....++.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 357788876665222222322 23344443 3322 467777755 2 88999999763 1111221
Q ss_pred e-eecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEE
Q 038537 173 M-TLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRV 251 (358)
Q Consensus 173 ~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i 251 (358)
. ......++|++++-. ++. |+++ ..+.|.+|++.... ..... ........+.++...+++++.|+....+.+
T Consensus 81 ~i~~~~~~g~V~ai~~~---~~~-lv~~-~g~~l~v~~l~~~~-~l~~~-~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSF---NGR-LVVA-VGNKLYVYDLDNSK-TLLKK-AFYDSPFYITSLSVFKNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEEESS-EEEEEEE---TTE-EEEE-ETTEEEEEEEETTS-SEEEE-EEE-BSSSEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEEeecCcceEhhhh---CCE-EEEe-ecCEEEEEEccCcc-cchhh-heecceEEEEEEeccccEEEEEEcccCEEE
Confidence 1 112346788888876 454 4444 35789999998844 11111 122234477888888999999998888888
Q ss_pred EEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 252 WRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 252 wd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+...........+.. ......++++.+-++ ++.++.+..+|.+.++....
T Consensus 154 ~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d------~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 154 LRYDEENNKLILVAR-DYQPRWVTAAEFLVD------EDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTTE-EEEEEE-ESS-BEEEEEEEE-S------SSEEEEEETTSEEEEEEE-S
T ss_pred EEEEccCCEEEEEEe-cCCCccEEEEEEecC------CcEEEEEcCCCeEEEEEECC
Confidence 865543211122222 123456889999877 56899999999999999874
No 343
>PHA02713 hypothetical protein; Provisional
Probab=98.09 E-value=0.0011 Score=60.01 Aligned_cols=149 Identities=7% Similarity=0.010 Sum_probs=84.6
Q ss_pred CCCEEEEEecCC-----eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC-------------------
Q 038537 100 AEGLLYTGSFDK-----TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG------------------- 155 (358)
Q Consensus 100 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------- 155 (358)
+++..+.|+.++ .+..||..+.++..+..+.........+.+ ++...+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 677778887754 488899998887665554432222222233 577777777653
Q ss_pred ----cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC------cEEEEEccC-CcCCccccceee
Q 038537 156 ----SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG------SINFWEKDK-MSGGFNHGGFLQ 224 (358)
Q Consensus 156 ----~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~-~~~~~~~~~~~~ 224 (358)
.+..||+.++. +.....+...... .+++.. ++.+.+.|+.++ .+..||..+ .. ......+.
T Consensus 429 ~~~~~ve~YDP~td~--W~~v~~m~~~r~~-~~~~~~---~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~~~~m~ 500 (557)
T PHA02713 429 HSSNKVIRYDTVNNI--WETLPNFWTGTIR-PGVVSH---KDDIYVVCDIKDEKNVKTCIFRYNTNTYNG--WELITTTE 500 (557)
T ss_pred cccceEEEECCCCCe--EeecCCCCccccc-CcEEEE---CCEEEEEeCCCCCCccceeEEEecCCCCCC--eeEccccC
Confidence 36677765442 2222222111111 122322 677778877542 366788776 22 33222233
Q ss_pred cccceeEEEeeeCCEEEEeeCCC--eEEEEEcCCCc
Q 038537 225 GHCFAVLCLVAIEKLIFSGSEDT--TIRVWRRAEGG 258 (358)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~ 258 (358)
......-....++.+.++|+.+| .+..||..+.+
T Consensus 501 ~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 501 SRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cccccceeEEECCEEEEEeeecceeehhhcCccccc
Confidence 22223333445788889999888 77888888774
No 344
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.07 E-value=0.0012 Score=55.41 Aligned_cols=177 Identities=18% Similarity=0.204 Sum_probs=102.8
Q ss_pred CcEEEEeCCCc----eeeeee--eecccceEEEEecCCEEEEEeCCceEEEEeccccc-ccccccccccCCCceeeeecC
Q 038537 9 TRIRVWRQPDC----VERGFI--KARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSD-NFRTKKVTTLPRRSSFLSFSK 81 (358)
Q Consensus 9 g~v~vw~~~~~----~~~~~~--~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (358)
|.|.++++... ..+..+ ....++|.++..-+++|+++. .+.|.+|++...+ ......
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~--------------- 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAF--------------- 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEE---------------
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhhe---------------
Confidence 88999999873 222222 345789999977666655554 5799999999877 222111
Q ss_pred CCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCc--ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038537 82 SNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR--CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 82 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
......+.++... +++++.|+....+.++..+... ...+. -......++++.+-++++.++++..+|.+.+
T Consensus 126 ----~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va-~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~ 198 (321)
T PF03178_consen 126 ----YDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVA-RDYQPRWVTAAEFLVDEDTIIVGDKDGNLFV 198 (321)
T ss_dssp ----E-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEE-EESS-BEEEEEEEE-SSSEEEEEETTSEEEE
T ss_pred ----ecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEE-ecCCCccEEEEEEecCCcEEEEEcCCCeEEE
Confidence 1122246666654 5689999988889988665422 11111 1223456888888866679999999999999
Q ss_pred EEceecC----Ccc-eeeeeecc-cCCceeEE---EEeec-CCC-----cEEEEeecCCcEEEE
Q 038537 160 WRRVYRE----NSH-TLTMTLKF-QQSSVNAL---ALSSF-FDN-----YFLYSGSSDGSINFW 208 (358)
Q Consensus 160 wd~~~~~----~~~-~~~~~~~~-~~~~i~~~---~~~~~-~~~-----~~l~~~~~dg~i~i~ 208 (358)
+...... ... .+...... ....|+++ .+.|. ... ..++.++.+|.|...
T Consensus 199 l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 199 LRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9875321 111 22222222 24556666 43331 011 247888889988844
No 345
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.05 E-value=0.0084 Score=53.83 Aligned_cols=191 Identities=11% Similarity=0.090 Sum_probs=108.5
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecc-cce----------EEEEecCCEEEEEeCCceEEEEeccccccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARH-GEV----------RAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~-~~v----------~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 70 (358)
|+.++.++.|.-.|..+++.+-.+.... ..+ ..+...++.++.++.|+.+.-.|..+++.+........
T Consensus 72 vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~ 151 (527)
T TIGR03075 72 MYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDY 151 (527)
T ss_pred EEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecccccc
Confidence 5677788899999999998877654321 111 12344567788888999999999999998876543211
Q ss_pred CCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe------cCCeEEEEEccCCcccccccccc---c---------
Q 038537 71 PRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS------FDKTVKAWRVLDKRCTCVDSFVA---H--------- 132 (358)
Q Consensus 71 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~---~--------- 132 (358)
.. ...+++--.--++ .++.+. .+|.|.-+|.++++. +-.+.. .
T Consensus 152 ~~----------------~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~--lW~~~~~p~~~~~~~~~~~ 212 (527)
T TIGR03075 152 KA----------------GYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKL--VWRRYTVPGDMGYLDKADK 212 (527)
T ss_pred cc----------------cccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCce--eEeccCcCCCccccccccc
Confidence 10 0011110000133 344443 267888888887762 211110 0
Q ss_pred -------------------ccCe-EEEEEcCCCCEEEEEeCC-----C-----------cEEEEEceecCCcceeeeeec
Q 038537 133 -------------------ESNV-NAIVVNQDDGFVFTCSSD-----G-----------SVKIWRRVYRENSHTLTMTLK 176 (358)
Q Consensus 133 -------------------~~~v-~~~~~~~~~~~l~~~~~d-----g-----------~i~~wd~~~~~~~~~~~~~~~ 176 (358)
...+ ..+++.|...++..+..+ + .|.-.|+++++....+...
T Consensus 213 ~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~-- 290 (527)
T TIGR03075 213 PVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTT-- 290 (527)
T ss_pred ccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCC--
Confidence 0111 134677777777766532 2 4666677777655544321
Q ss_pred ccC-------CceeEEEEeecCCCc---EEEEeecCCcEEEEEccCCcC
Q 038537 177 FQQ-------SSVNALALSSFFDNY---FLYSGSSDGSINFWEKDKMSG 215 (358)
Q Consensus 177 ~~~-------~~i~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~ 215 (358)
.|. ....-+.+.. +++ .++.+..+|.+++.|.++++.
T Consensus 291 ~~D~wD~d~~~~p~l~d~~~--~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 291 PHDEWDYDGVNEMILFDLKK--DGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred CCCCccccCCCCcEEEEecc--CCcEEEEEEEeCCCceEEEEECCCCce
Confidence 111 1111112212 454 788899999999999887654
No 346
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.01 E-value=0.0019 Score=58.34 Aligned_cols=225 Identities=14% Similarity=0.181 Sum_probs=125.8
Q ss_pred CCEEEEEeCCc------eEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecC--
Q 038537 39 DNMLFTTNKDC------KIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD-- 110 (358)
Q Consensus 39 ~~~l~s~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-- 110 (358)
+..++.||.++ .+..||..++.-...... . +...-.+++.. ++...++|+.|
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m------------------~-~~r~~~~~~~~-~~~lYv~GG~~~~ 344 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM------------------P-SPRCRVGVAVL-NGKLYVVGGYDSG 344 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCC------------------C-cccccccEEEE-CCEEEEEccccCC
Confidence 45677777764 566777766532221111 1 11123344444 55778889888
Q ss_pred ----CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc-----EEEEEceecCCcceeeeeecccCCc
Q 038537 111 ----KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS-----VKIWRRVYRENSHTLTMTLKFQQSS 181 (358)
Q Consensus 111 ----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~~wd~~~~~~~~~~~~~~~~~~~~ 181 (358)
.++..||..+.++..+..+...........+ +|...++|+.||. +-.||..+.+ +.....+.. .
T Consensus 345 ~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~--W~~va~m~~---~ 417 (571)
T KOG4441|consen 345 SDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK--WTPVAPMLT---R 417 (571)
T ss_pred CcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc--ccccCCCCc---c
Confidence 3678899998887666655543333333333 6888889998864 6667765443 222221111 1
Q ss_pred eeEEEEeecCCCcEEEEeecCC------cEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCe-----EE
Q 038537 182 VNALALSSFFDNYFLYSGSSDG------SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTT-----IR 250 (358)
Q Consensus 182 i~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~-----i~ 250 (358)
........ .++.+.++|+.++ ++..||..+.. ......+............++.+.+.||.|+. |.
T Consensus 418 r~~~gv~~-~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE 494 (571)
T KOG4441|consen 418 RSGHGVAV-LGGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVE 494 (571)
T ss_pred eeeeEEEE-ECCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCcccccccceEEEECCEEEEECCccCCCccceEE
Confidence 22222221 1788888888654 46778877633 22222222222222244457788888887763 77
Q ss_pred EEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 251 VWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 251 iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
.||..+.+. ..+..+......+-...+. +...+.|+.||.-++
T Consensus 495 ~ydp~~~~W--~~v~~m~~~rs~~g~~~~~--------~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 495 RYDPETNQW--TMVAPMTSPRSAVGVVVLG--------GKLYAVGGFDGNNNL 537 (571)
T ss_pred EEcCCCCce--eEcccCccccccccEEEEC--------CEEEEEecccCcccc
Confidence 788888753 4444343333333333332 578889998876433
No 347
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.98 E-value=0.0066 Score=51.79 Aligned_cols=260 Identities=11% Similarity=0.056 Sum_probs=121.3
Q ss_pred CCcEEEEeCCCceeeeeeeecccceE--EEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCcc
Q 038537 8 STRIRVWRQPDCVERGFIKARHGEVR--AILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQ 85 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~~h~~~v~--~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (358)
.+.+.|+|+.+++....... ...+. .++++++.++-.. ++.|.+++..++...+..... ...+..-.+.-..
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg----~~~i~nG~~dwvy 95 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG----EPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES------TTTEEESB--HHH
T ss_pred ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc----ceeEEcCccceec
Confidence 46788999999776555444 33333 4566888887775 578999988766433211111 0000000000000
Q ss_pred ccC-CCceEEEEEeCCCCEEEEEecC-Ce-----------------------------------EEEEEccCCccccccc
Q 038537 86 QQH-RDCVSCMAFYHAEGLLYTGSFD-KT-----------------------------------VKAWRVLDKRCTCVDS 128 (358)
Q Consensus 86 ~~h-~~~v~~~~~~~~~~~l~~~~~d-g~-----------------------------------i~iwd~~~~~~~~~~~ 128 (358)
+.- -+.-..+-|||++++|+....| .. +.++|+.+++...+..
T Consensus 96 eEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~ 175 (353)
T PF00930_consen 96 EEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDP 175 (353)
T ss_dssp HHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE--
T ss_pred cccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeee
Confidence 000 1123457888888877765432 22 3334444443211111
Q ss_pred ---ccccccCeEEEEEcCCCCEEEEE--eCCC---cEEEEEceecCCcceeeeeecccCCceeEEEEe-ecCCCcEEEEe
Q 038537 129 ---FVAHESNVNAIVVNQDDGFVFTC--SSDG---SVKIWRRVYRENSHTLTMTLKFQQSSVNALALS-SFFDNYFLYSG 199 (358)
Q Consensus 129 ---~~~~~~~v~~~~~~~~~~~l~~~--~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~l~~~ 199 (358)
+......+..+.|.+++..|+.. ..+. .+.++|..++............--..-....+. + .+..++...
T Consensus 176 ~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~-~~~~~l~~s 254 (353)
T PF00930_consen 176 PNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGP-DGNEFLWIS 254 (353)
T ss_dssp -HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TT-TSSEEEEEE
T ss_pred ccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccC-CCCEEEEEE
Confidence 12234467788898888834333 2222 355566655433222221111111222344443 3 245556666
Q ss_pred ecCCcEEEEEccCCcCCccccceeecccc---eeEEEeeeCCEE-EEeeCC----CeEEEEEcC-CCceeeeeeeeecCc
Q 038537 200 SSDGSINFWEKDKMSGGFNHGGFLQGHCF---AVLCLVAIEKLI-FSGSED----TTIRVWRRA-EGGCYHECLAVLDGH 270 (358)
Q Consensus 200 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l-~~~~~d----g~i~iwd~~-~~~~~~~~~~~~~~h 270 (358)
..+|.-+||-+........ .+..... .+..++..++.| +++..+ ..|+.-++. .+. +..+...
T Consensus 255 ~~~G~~hly~~~~~~~~~~---~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~-----~~~LT~~ 326 (353)
T PF00930_consen 255 ERDGYRHLYLYDLDGGKPR---QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGE-----PKCLTCE 326 (353)
T ss_dssp ETTSSEEEEEEETTSSEEE---ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTE-----EEESSTT
T ss_pred EcCCCcEEEEEccccccee---ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCC-----eEeccCC
Confidence 6777666655444222211 2222222 345566665544 455542 345555666 442 2233332
Q ss_pred ccceEEEEeecc
Q 038537 271 RGPVRCLAASLE 282 (358)
Q Consensus 271 ~~~v~~i~~~~~ 282 (358)
.+.-..+.|+|+
T Consensus 327 ~~~~~~~~~Spd 338 (353)
T PF00930_consen 327 DGDHYSASFSPD 338 (353)
T ss_dssp SSTTEEEEE-TT
T ss_pred CCCceEEEECCC
Confidence 222268999999
No 348
>PHA02713 hypothetical protein; Provisional
Probab=97.96 E-value=0.00068 Score=61.22 Aligned_cols=188 Identities=9% Similarity=0.145 Sum_probs=100.9
Q ss_pred CCCEEEEEecC------CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEceecCCc
Q 038537 100 AEGLLYTGSFD------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG-----SVKIWRRVYRENS 168 (358)
Q Consensus 100 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~ 168 (358)
++...+.|+.+ ..+..||..+..+..+..+.........+.+ ++...+.|+.++ .+..||..++.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~-- 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDK-- 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCe--
Confidence 66677777753 3577899888876555444322222222222 577777887754 37788876442
Q ss_pred ceeeeeecccCCceeEEEEeecCCCcEEEEeecCC-----------------------cEEEEEccCCcCCccccceeec
Q 038537 169 HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG-----------------------SINFWEKDKMSGGFNHGGFLQG 225 (358)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~ 225 (358)
+.....+....... +++.. ++...+.|+.++ .+..||..+.. +.....+..
T Consensus 379 W~~~~~mp~~r~~~-~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--W~~v~~m~~ 452 (557)
T PHA02713 379 WKMLPDMPIALSSY-GMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--WETLPNFWT 452 (557)
T ss_pred EEECCCCCcccccc-cEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--EeecCCCCc
Confidence 22222222111112 22222 678888887653 46778877632 222221211
Q ss_pred ccceeEEEeeeCCEEEEeeCC------CeEEEEEcCC-CceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 226 HCFAVLCLVAIEKLIFSGSED------TTIRVWRRAE-GGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
..........++.+.+.|+.+ ..+..||..+ .+. ..+..+.........+.+ + +.+.+.||.|
T Consensus 453 ~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W--~~~~~m~~~r~~~~~~~~--~------~~iyv~Gg~~ 522 (557)
T PHA02713 453 GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW--ELITTTESRLSALHTILH--D------NTIMMLHCYE 522 (557)
T ss_pred ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCe--eEccccCcccccceeEEE--C------CEEEEEeeec
Confidence 111112234456777777654 2467899887 543 445555444333333333 2 6789999998
Q ss_pred C--cEEEEEee
Q 038537 299 Q--TFKVWRVK 307 (358)
Q Consensus 299 g--~v~iw~~~ 307 (358)
| .+..||+.
T Consensus 523 ~~~~~e~yd~~ 533 (557)
T PHA02713 523 SYMLQDTFNVY 533 (557)
T ss_pred ceeehhhcCcc
Confidence 8 45555554
No 349
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=7.1e-05 Score=64.78 Aligned_cols=95 Identities=8% Similarity=0.010 Sum_probs=75.4
Q ss_pred CCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeE-EEEEcCCCCEEEEEeCCCcEEEEEceecC
Q 038537 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVN-AIVVNQDDGFVFTCSSDGSVKIWRRVYRE 166 (358)
Q Consensus 88 h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 166 (358)
-...|.-+.|+|.-.++|++..+|.|.+..+.-. .+-++.-+...++ +++|.|||+.|++|-.||+|++.|+.++.
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~q---Rlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLNWQ---RLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEeccc---eeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 3455888999999999999999999999998733 5777776777777 99999999999999999999999998776
Q ss_pred CcceeeeeecccCCceeEEEEe
Q 038537 167 NSHTLTMTLKFQQSSVNALALS 188 (358)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~~ 188 (358)
...... ..-...|.++.|.
T Consensus 96 ~l~~~~---~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 96 RLVSFL---FSVETDISKGIWD 114 (665)
T ss_pred ceeccc---cccccchheeecc
Confidence 544321 1234566677665
No 350
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.86 E-value=3.8e-05 Score=41.14 Aligned_cols=38 Identities=45% Similarity=0.659 Sum_probs=33.2
Q ss_pred eeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 262 ECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 262 ~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
++...+..|...|.++.|.+. +.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD------GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC------CCEEEEecCCCeEEEcC
Confidence 456667788999999999998 77999999999999996
No 351
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.80 E-value=0.0097 Score=51.65 Aligned_cols=171 Identities=11% Similarity=0.064 Sum_probs=87.3
Q ss_pred eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEE-----E
Q 038537 112 TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNAL-----A 186 (358)
Q Consensus 112 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~-----~ 186 (358)
.|.||+..... +..+.-..+.+.++.|..+ ..|++...||.+++||+.... ++..........|... .
T Consensus 62 ~I~iys~sG~l---l~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~ 134 (410)
T PF04841_consen 62 SIQIYSSSGKL---LSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIW 134 (410)
T ss_pred EEEEECCCCCE---eEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccc
Confidence 58888876554 3333333388999999875 556677899999999985222 1111111122222222 2
Q ss_pred EeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec-------ccc--eeEEEeeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 187 LSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG-------HCF--AVLCLVAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 187 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
+.. +| ++.-..++.+.+.+-............... ... .+..+..+....+....++.+.+.+....
T Consensus 135 ~~~--~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~ 210 (410)
T PF04841_consen 135 FYK--NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF 210 (410)
T ss_pred cCC--CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc
Confidence 221 33 222234454444332221100000000000 000 11122333444444444555554433221
Q ss_pred ceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 258 GCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 258 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
..+ ...+++..|+.||+ ++++|.-..+|.+.+....
T Consensus 211 -------~~i-~~~~~i~~iavSpn------g~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 211 -------KQI-DSDGPIIKIAVSPN------GKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred -------ccc-cCCCCeEEEEECCC------CCEEEEEECCCCEEEEECc
Confidence 012 12468999999999 8899999999998887654
No 352
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.75 E-value=0.0043 Score=41.82 Aligned_cols=105 Identities=19% Similarity=0.089 Sum_probs=65.7
Q ss_pred eeEEEEeecCC--CcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee-eCCEEEEeeCCCeEEEEEcCCCc
Q 038537 182 VNALALSSFFD--NYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA-IEKLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 182 i~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 258 (358)
|+++++..... .+.|++|+.|..|++|+-.. ....+ .....++++.. .+..++.+-.+|+|-+|+-...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------~~~Ei-~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R- 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------IVAEI-TETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR- 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------EEEEE-ecccceEEEEEcCCCEEEEEecCCEEEEEeCcce-
Confidence 56666665322 37899999999999998654 11112 22344555554 4578999999999999987543
Q ss_pred eeeeeeeeecCcccceEEEEeecc-cceeeeCeEEEEccCCCcEEE
Q 038537 259 CYHECLAVLDGHRGPVRCLAASLE-MEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 259 ~~~~~~~~~~~h~~~v~~i~~~~~-~~~~~~~~~l~s~~~dg~v~i 303 (358)
+...+. ...++++.+..- +. .-.-|++|-.+|.|-+
T Consensus 74 -----lWRiKS-K~~~~~~~~~D~~gd---G~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 74 -----LWRIKS-KNQVTSMAFYDINGD---GVPELIVGWSNGKVEV 110 (111)
T ss_pred -----eeeecc-CCCeEEEEEEcCCCC---CceEEEEEecCCeEEe
Confidence 223322 233667666543 11 0246888888888753
No 353
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.00088 Score=62.00 Aligned_cols=110 Identities=16% Similarity=0.252 Sum_probs=78.8
Q ss_pred ceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecC
Q 038537 31 EVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD 110 (358)
Q Consensus 31 ~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 110 (358)
.+.+.+.-+..++.|+..|.+...|+...-.. .. .-..-.++|++++|+.+|..++.|-.+
T Consensus 91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~--~~-----------------~ne~v~~~Vtsvafn~dg~~l~~G~~~ 151 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGP--LH-----------------QNERVQGPVTSVAFNQDGSLLLAGLGD 151 (1206)
T ss_pred ceeeeeeeeeeEEEEcCchhhhhhhhhcccch--hh-----------------cCCccCCcceeeEecCCCceeccccCC
Confidence 34444555677888888899988887754210 00 002346789999999999999999999
Q ss_pred CeEEEEEccCCcccccccccccccCeEEEE---EcCCCCEEEEEeCCCcEEEEEce
Q 038537 111 KTVKAWRVLDKRCTCVDSFVAHESNVNAIV---VNQDDGFVFTCSSDGSVKIWRRV 163 (358)
Q Consensus 111 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~l~~~~~dg~i~~wd~~ 163 (358)
|.|.+||+..++ ..+.+..|..+.+.+- +..++..++++...|. +|.+.
T Consensus 152 G~V~v~D~~~~k--~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 152 GHVTVWDMHRAK--ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CcEEEEEccCCc--ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 999999999877 6666666666655554 3445667888887776 66654
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.74 E-value=0.0044 Score=53.91 Aligned_cols=144 Identities=19% Similarity=0.159 Sum_probs=79.0
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEcc
Q 038537 132 HESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKD 211 (358)
Q Consensus 132 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 211 (358)
.......+.++|+++++++ +.||.-.++.. ...... ..+.-....|.+ .+.+++-...+.|.++.--
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~----~~~r~k-----~~G~g~~~vw~~---~n~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTA----LAWRNK-----AFGSGLSFVWSS---RNRYAVLESSSTIKIYKNF 97 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEET----TTTEEE-----EEEE-SEEEE-T---SSEEEEE-TTS-EEEEETT
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEc----cCCccc-----ccCceeEEEEec---CccEEEEECCCeEEEEEcC
Confidence 3445789999999999888 56787777762 111111 134455677775 4457777778899997322
Q ss_pred CCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeE
Q 038537 212 KMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFL 291 (358)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~ 291 (358)
+...... +.. +..+..+-. |.+|+..+.+ .|.+||..++ +.+..+... +|..+.|+++ +.+
T Consensus 98 ~~~~~k~----i~~-~~~~~~If~-G~LL~~~~~~-~i~~yDw~~~----~~i~~i~v~--~vk~V~Ws~~------g~~ 158 (443)
T PF04053_consen 98 KNEVVKS----IKL-PFSVEKIFG-GNLLGVKSSD-FICFYDWETG----KLIRRIDVS--AVKYVIWSDD------GEL 158 (443)
T ss_dssp EE-TT----------SS-EEEEE--SSSEEEEETT-EEEEE-TTT------EEEEESS---E-EEEEE-TT------SSE
T ss_pred ccccceE----EcC-CcccceEEc-CcEEEEECCC-CEEEEEhhHc----ceeeEEecC--CCcEEEEECC------CCE
Confidence 2111011 111 112223333 7777777655 8999999998 556666433 4899999999 788
Q ss_pred EEEccCCCcEEEEEeee
Q 038537 292 VYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 292 l~s~~~dg~v~iw~~~~ 308 (358)
++-.+.+ .+.|++.+.
T Consensus 159 val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 159 VALVTKD-SIYILKYNL 174 (443)
T ss_dssp EEEE-S--SEEEEEE-H
T ss_pred EEEEeCC-eEEEEEecc
Confidence 8888766 788877653
No 355
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.72 E-value=0.013 Score=52.39 Aligned_cols=108 Identities=9% Similarity=0.037 Sum_probs=73.5
Q ss_pred eCCCCEEEEEecCCeEEEEEccC----CcccccccccccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEceecCCc----
Q 038537 98 YHAEGLLYTGSFDKTVKAWRVLD----KRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DGSVKIWRRVYRENS---- 168 (358)
Q Consensus 98 ~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~---- 168 (358)
.++|++...+ ++.|.+.|..+ +. ..+..+ .-......+.++|||+++++++. +..+.+.|+...+..
T Consensus 285 vkdGK~~~V~--gn~V~VID~~t~~~~~~-~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 285 VKAGKFKTIG--GSKVPVVDGRKAANAGS-ALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhCCCEEEEC--CCEEEEEECCccccCCc-ceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 4467766653 57899999887 22 123322 34566789999999998887765 899999999764321
Q ss_pred ----ceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 169 ----HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 169 ----~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
..+...... .......+|.+ +|+.+.+-..|..|..|++..
T Consensus 361 ~~~~~~vvaevev-GlGPLHTaFDg--~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPEL-GLGPLHTAFDG--RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeecc-CCCcceEEECC--CCCEEEeEeecceeEEEehHH
Confidence 111111221 23445667776 788888889999999999886
No 356
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.72 E-value=0.013 Score=45.67 Aligned_cols=108 Identities=11% Similarity=0.086 Sum_probs=76.4
Q ss_pred CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEc
Q 038537 39 DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRV 118 (358)
Q Consensus 39 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 118 (358)
..+++.|+..+.+.--|..++...+...+ ..+|.+-+.- -|++++.|...|.+++.+.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il---------------------g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~ 80 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL---------------------GVRIECSAIV-VGDFVVLGCYSGGLYFLCV 80 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh---------------------CceeeeeeEE-ECCEEEEEEccCcEEEEEe
Confidence 56888899999999889888887765332 2223332222 4678999999999999999
Q ss_pred cCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcce
Q 038537 119 LDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHT 170 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 170 (358)
+++. ....+.....-=......+++..+..|+.|+..+..|.++.....+
T Consensus 81 ~tGs--~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 81 KTGS--QIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred cchh--heeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 9996 4444443222112234567899999999999999999976654443
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.72 E-value=0.024 Score=49.42 Aligned_cols=221 Identities=12% Similarity=0.080 Sum_probs=105.9
Q ss_pred ceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe
Q 038537 31 EVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS 108 (358)
Q Consensus 31 ~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 108 (358)
....++. +++.+++ +.||.-.|+.....+. ...+.-....|.+.++ +|+-.
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~-------------------------k~~G~g~~~vw~~~n~-yAv~~ 86 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN-------------------------KAFGSGLSFVWSSRNR-YAVLE 86 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEE-------------------------EEEEE-SEEEE-TSSE-EEEE-
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc-------------------------cccCceeEEEEecCcc-EEEEE
Confidence 3445544 5666666 5578888887332211 1233456688888554 66666
Q ss_pred cCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEe
Q 038537 109 FDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALS 188 (358)
Q Consensus 109 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 188 (358)
.++.|.|+.--+.+ ....+.. ...+..|-. |..|...+. +.|.+||+.++. ...... -..|..+.|+
T Consensus 87 ~~~~I~I~kn~~~~--~~k~i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~----~i~~i~--v~~vk~V~Ws 153 (443)
T PF04053_consen 87 SSSTIKIYKNFKNE--VVKSIKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGK----LIRRID--VSAVKYVIWS 153 (443)
T ss_dssp TTS-EEEEETTEE---TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT------EEEEES--S-E-EEEEE-
T ss_pred CCCeEEEEEcCccc--cceEEcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcc----eeeEEe--cCCCcEEEEE
Confidence 68889996322222 2223321 223444433 777766654 489999996554 333332 2348899999
Q ss_pred ecCCCcEEEEeecCCcEEEEEccCC------c-CCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceee
Q 038537 189 SFFDNYFLYSGSSDGSINFWEKDKM------S-GGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYH 261 (358)
Q Consensus 189 ~~~~~~~l~~~~~dg~i~i~d~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 261 (358)
+ ++.+++..+.+ .+.+++.... . +..........-...|.+..|.++.++-.+.. .|+. +..++.
T Consensus 154 ~--~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge~-- 225 (443)
T PF04053_consen 154 D--DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNGET-- 225 (443)
T ss_dssp T--TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-TT-EEEE--EETTEE--
T ss_pred C--CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcCCc--
Confidence 8 88888888755 6777765542 0 00001111111134555556666655544444 5655 334421
Q ss_pred eeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 262 ECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 262 ~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
..+.. -..++.=+...|. ...+.....|+.|..+.+..
T Consensus 226 ~~i~~---ld~~~yllgy~~~------~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 226 GIIAH---LDKPLYLLGYLPK------ENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEEE----SS--EEEEEETT------TTEEEEE-TT--EEEEE--H
T ss_pred ceEEE---cCCceEEEEEEcc------CCEEEEEECCCCEEEEEECH
Confidence 22222 2456666777775 45778888899999888764
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.70 E-value=0.0017 Score=59.78 Aligned_cols=144 Identities=14% Similarity=0.150 Sum_probs=89.5
Q ss_pred CCEEEEE-ecCCeEEEEEccCCcccccccccccccC-eEEEEEcC-----CCCEEEEEeCCCcEEEEEceecCCccee-e
Q 038537 101 EGLLYTG-SFDKTVKAWRVLDKRCTCVDSFVAHESN-VNAIVVNQ-----DDGFVFTCSSDGSVKIWRRVYRENSHTL-T 172 (358)
Q Consensus 101 ~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~ 172 (358)
.++|+.- .....|+-.|++.++ .+..+..+... |..++-.. .....+.|-.+..+..||+|........ .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GK--VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGK--VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cceEeecCCCCCceEEEecCCCc--EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 3344433 355789999999998 67777766543 55554321 2345677788899999999865421110 0
Q ss_pred eeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEeeeCCEEEEeeCCCeEE
Q 038537 173 MTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIR 250 (358)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~ 250 (358)
...-.......|++-+ ...+||+|+.+|.|++||--. .. ....+.+-..+| ++++.+|++|++.+. ..|.
T Consensus 571 ~k~Y~~~~~Fs~~aTt---~~G~iavgs~~G~IRLyd~~g-~~---AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLl 642 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATT---EDGYIAVGSNKGDIRLYDRLG-KR---AKTALPGLGDPIIGIDVTADGKWILATCK-TYLL 642 (794)
T ss_pred ccccccCCCceEEEec---CCceEEEEeCCCcEEeecccc-hh---hhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEE
Confidence 0011234456677666 567899999999999999432 22 222344444555 455678999887764 4577
Q ss_pred EEEc
Q 038537 251 VWRR 254 (358)
Q Consensus 251 iwd~ 254 (358)
+++.
T Consensus 643 Li~t 646 (794)
T PF08553_consen 643 LIDT 646 (794)
T ss_pred EEEE
Confidence 7765
No 359
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.69 E-value=0.0039 Score=42.01 Aligned_cols=87 Identities=18% Similarity=0.256 Sum_probs=57.9
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe-cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA-HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
|++||.|..||+|+-. +.+..+..+ ..|.++.. .+..++.+-.+|+|-+|+-.. .++..+
T Consensus 18 LlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~--RlWRiK-------------- 78 (111)
T PF14783_consen 18 LLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGGGRFAYALANGTVGVYDRSQ--RLWRIK-------------- 78 (111)
T ss_pred EEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCCCEEEEEecCCEEEEEeCcc--eeeeec--------------
Confidence 7899999999999843 455555544 45556644 678999999999999997532 222211
Q ss_pred CCCccccCCCceEEEEEeC-C--C-CEEEEEecCCeEE
Q 038537 81 KSNTQQQHRDCVSCMAFYH-A--E-GLLYTGSFDKTVK 114 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~-~--~-~~l~~~~~dg~i~ 114 (358)
....++++.+.. + | ..|++|=.+|.|-
T Consensus 79 -------SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 79 -------SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -------cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 122366666653 2 2 3688888888764
No 360
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.69 E-value=0.02 Score=46.94 Aligned_cols=240 Identities=16% Similarity=0.146 Sum_probs=122.2
Q ss_pred EEeeeCCCcEEEEeCCC-ceeeeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 2 VFTGSSSTRIRVWRQPD-CVERGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~-~~~~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
|+.|+.+| |.+++... ........ ...|..+..- -+.+++-+ |+.+.++++..-...........+....
T Consensus 10 L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~--- 82 (275)
T PF00780_consen 10 LLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS--- 82 (275)
T ss_pred EEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc---
Confidence 78889999 99999832 22222222 2237777653 34444443 5999999998665443211000000000
Q ss_pred ecCCCccccCCCceEEEE--EeCCCCEEEEEecCCeEEEEEccCCc--c-cccccccccccCeEEEEEcCCCCEEEEEeC
Q 038537 79 FSKSNTQQQHRDCVSCMA--FYHAEGLLYTGSFDKTVKAWRVLDKR--C-TCVDSFVAHESNVNAIVVNQDDGFVFTCSS 153 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 153 (358)
..........+...+ -...+...+.......|.+|...... . .....+. -...+.+++|. ++.++.|..
T Consensus 83 ---~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 83 ---LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred ---ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 000011222344444 12233344444455689999887642 1 1333332 35788999998 667777765
Q ss_pred CCcEEEEEceecCCcceeeeeec--------ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec
Q 038537 154 DGSVKIWRRVYRENSHTLTMTLK--------FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG 225 (358)
Q Consensus 154 dg~i~~wd~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 225 (358)
++ ..+.|+.++....-+..... ....++..+... ++.+|++- |..-.+.|.... ... ...+.
T Consensus 157 ~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~e~Ll~~--~~~g~fv~~~G~-~~r--~~~i~- 226 (275)
T PF00780_consen 157 KG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS---DNEFLLCY--DNIGVFVNKNGE-PSR--KSTIQ- 226 (275)
T ss_pred Cc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC---CceEEEEe--cceEEEEcCCCC-cCc--ccEEE-
Confidence 54 77888875543221111000 011223333332 45555543 333344444331 111 11121
Q ss_pred ccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecC
Q 038537 226 HCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDG 269 (358)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 269 (358)
-......+.....+|++.+.++ |.||++.++ +.++.+..
T Consensus 227 W~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~----~lvQ~i~~ 265 (275)
T PF00780_consen 227 WSSAPQSVAYSSPYLIAFSSNS-IEVRSLETG----ELVQTIPL 265 (275)
T ss_pred cCCchhEEEEECCEEEEECCCE-EEEEECcCC----cEEEEEEC
Confidence 1223445555677888877655 999999998 55665543
No 361
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.66 E-value=0.022 Score=46.69 Aligned_cols=230 Identities=9% Similarity=0.048 Sum_probs=121.5
Q ss_pred EecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEE
Q 038537 36 LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKA 115 (358)
Q Consensus 36 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~i 115 (358)
...++.|+.|..+| +.++++........ ..+...|..+...|+-+.|++-+ |+.+.+
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~---------------------i~~~~~I~ql~vl~~~~~llvLs-d~~l~~ 60 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTR---------------------ILKLSSITQLSVLPELNLLLVLS-DGQLYV 60 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCcccee---------------------EeecceEEEEEEecccCEEEEEc-CCccEE
Confidence 34578899999998 88998822211110 12233389999998777666554 499999
Q ss_pred EEccCCccccccc------------ccccccCeEEEE--EcCCCCEEEEEeCCCcEEEEEceecCCcc-eeeeeecccCC
Q 038537 116 WRVLDKRCTCVDS------------FVAHESNVNAIV--VNQDDGFVFTCSSDGSVKIWRRVYRENSH-TLTMTLKFQQS 180 (358)
Q Consensus 116 wd~~~~~~~~~~~------------~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~ 180 (358)
+++..-....... .......+...+ -...+...++......|.+|......... .....+. -..
T Consensus 61 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~ 139 (275)
T PF00780_consen 61 YDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPD 139 (275)
T ss_pred EEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCC
Confidence 9987654212110 111223444444 11234444445556689999887643322 2223322 347
Q ss_pred ceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccccee--------ecccceeEEEeee-CCEEEEeeCCCeEEE
Q 038537 181 SVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFL--------QGHCFAVLCLVAI-EKLIFSGSEDTTIRV 251 (358)
Q Consensus 181 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~l~~~~~dg~i~i 251 (358)
.+..++|. ++.++.|..+ ...+.|+.+........... .....++..+..+ +.+|++- |..-.+
T Consensus 140 ~~~~i~~~----~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~f 212 (275)
T PF00780_consen 140 PPSSIAFL----GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVF 212 (275)
T ss_pred CcEEEEEe----CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEE
Confidence 78888886 4567777654 47888888633211110000 0011122233322 4555543 333333
Q ss_pred EEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 252 WRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 252 wd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
.|.. |+..+.....+ .....++++... +|+..+.+ .|.||++.+.
T Consensus 213 v~~~-G~~~r~~~i~W---~~~p~~~~~~~p--------yli~~~~~-~iEV~~~~~~ 257 (275)
T PF00780_consen 213 VNKN-GEPSRKSTIQW---SSAPQSVAYSSP--------YLIAFSSN-SIEVRSLETG 257 (275)
T ss_pred EcCC-CCcCcccEEEc---CCchhEEEEECC--------EEEEECCC-EEEEEECcCC
Confidence 4443 32211122222 224556666543 66666654 5999999864
No 362
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.66 E-value=0.019 Score=45.75 Aligned_cols=204 Identities=14% Similarity=0.140 Sum_probs=104.6
Q ss_pred ccCCCceEEEEEeCCCC-EEEEEecCCeEEEEEccCCccccccccccc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEEce
Q 038537 86 QQHRDCVSCMAFYHAEG-LLYTGSFDKTVKAWRVLDKRCTCVDSFVAH-ESNVNAIVVNQDDGFVFTCSSDGSVKIWRRV 163 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 163 (358)
.+-...+..++|.|+.+ ++++....+.|..++.+ ++ .+..+.-. .+..-.|++..++.++++.-.++.+.++++.
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~--vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK--VLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC--EEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 45555699999999765 55566677888888864 55 33333221 3567889998777777665568999999884
Q ss_pred ecCCcce------eeeee-cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccc-ce---e---ecccce
Q 038537 164 YRENSHT------LTMTL-KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG-GF---L---QGHCFA 229 (358)
Q Consensus 164 ~~~~~~~------~~~~~-~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~---~---~~~~~~ 229 (358)
....... +.... ..++..+..++|++ .++.|+.+-...-..+|.+.......... .. . ......
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~--~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP--KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEET--TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcC--CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 4322111 11111 23556789999998 77777777777777787776411100100 00 0 001111
Q ss_pred e--EEEee-eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecC-cc------cceEEEEeecccceeeeCeEEEEccCCC
Q 038537 230 V--LCLVA-IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDG-HR------GPVRCLAASLEMEKVVMGFLVYSSSLDQ 299 (358)
Q Consensus 230 ~--~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~------~~v~~i~~~~~~~~~~~~~~l~s~~~dg 299 (358)
+ .+++| .+.+++....+..|..+|.. ++. .....+.. .. ..--.|+|.++ |.+.+++ +-+
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~--~~~~~L~~g~~gl~~~~~QpEGIa~d~~------G~LYIvs-EpN 242 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELDRQ-GRV--VSSLSLDRGFHGLSKDIPQPEGIAFDPD------GNLYIVS-EPN 242 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE-TT---E--EEEEE-STTGGG-SS---SEEEEEE-TT--------EEEEE-TTT
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEECCC-CCE--EEEEEeCCcccCcccccCCccEEEECCC------CCEEEEc-CCc
Confidence 2 33444 35677788888999999944 422 11222222 11 24678999998 6555544 444
Q ss_pred cEEEE
Q 038537 300 TFKVW 304 (358)
Q Consensus 300 ~v~iw 304 (358)
...++
T Consensus 243 lfy~f 247 (248)
T PF06977_consen 243 LFYRF 247 (248)
T ss_dssp EEEEE
T ss_pred eEEEe
Confidence 44443
No 363
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.62 E-value=0.00011 Score=39.15 Aligned_cols=37 Identities=22% Similarity=0.598 Sum_probs=32.2
Q ss_pred ccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038537 125 CVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWR 161 (358)
Q Consensus 125 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 161 (358)
+...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3455667888999999999999999999999999995
No 364
>PHA03098 kelch-like protein; Provisional
Probab=97.60 E-value=0.029 Score=50.93 Aligned_cols=149 Identities=10% Similarity=0.100 Sum_probs=76.9
Q ss_pred CCCEEEEEecC-----CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC------CcEEEEEceecCCc
Q 038537 100 AEGLLYTGSFD-----KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD------GSVKIWRRVYRENS 168 (358)
Q Consensus 100 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~ 168 (358)
++...+.|+.+ ..+..||..+.++.....+....... +++. -++...+.|+.+ ..+..||+.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-- 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK-- 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe--
Confidence 66777778765 35778898888765554443221111 2222 256667777632 357788876432
Q ss_pred ceeeeeecccCCceeEEEEeecCCCcEEEEeecCC--------cEEEEEccCCcCCccccceeecccceeEEEeeeCCEE
Q 038537 169 HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG--------SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLI 240 (358)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (358)
+............ .++... ++..++.|+.+. .+.+||..+.. ...................++.++
T Consensus 418 W~~~~~~p~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iy 491 (534)
T PHA03098 418 WSKGSPLPISHYG-GCAIYH---DGKIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIFNNKIY 491 (534)
T ss_pred eeecCCCCccccC-ceEEEE---CCEEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEECCEEE
Confidence 2221111111111 122222 567777776532 37888887633 221111111111112223467777
Q ss_pred EEeeCC-----CeEEEEEcCCCc
Q 038537 241 FSGSED-----TTIRVWRRAEGG 258 (358)
Q Consensus 241 ~~~~~d-----g~i~iwd~~~~~ 258 (358)
+.|+.+ ..+.+||..+.+
T Consensus 492 v~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 492 VVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEcCCcCCcccceeEEEeCCCCE
Confidence 777754 468889988764
No 365
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.053 Score=46.75 Aligned_cols=194 Identities=11% Similarity=0.092 Sum_probs=119.5
Q ss_pred cCC-EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec---CCeE
Q 038537 38 HDN-MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF---DKTV 113 (358)
Q Consensus 38 ~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~---dg~i 113 (358)
.++ .++....++.|.+.|............ +. ....++++|+++.+..+.. ++++
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-------------------G~--~P~~~~~~~~~~~vYV~n~~~~~~~v 142 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-------------------GL--GPVGLAVDPDGKYVYVANAGNGNNTV 142 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccceeeEeee-------------------cc--CCceEEECCCCCEEEEEecccCCceE
Confidence 444 445555568899998665554433221 11 4567899999987777655 6888
Q ss_pred EEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEe-CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCC
Q 038537 114 KAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCS-SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFD 192 (358)
Q Consensus 114 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 192 (358)
.+.|..+.+ .......-..+ ..++++|+++.++... .++.|.+.|................-......+.+.+ +
T Consensus 143 svid~~t~~--~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~--~ 217 (381)
T COG3391 143 SVIDAATNK--VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDP--D 217 (381)
T ss_pred EEEeCCCCe--EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECC--C
Confidence 888888777 44443332334 8999999999766665 6889999996543322100000111234456788887 7
Q ss_pred CcEEEEeecC---CcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEee-CCCeEEEEEcCCCc
Q 038537 193 NYFLYSGSSD---GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGS-EDTTIRVWRRAEGG 258 (358)
Q Consensus 193 ~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 258 (358)
+..+.+.... +.+...|.............-.. ...-..+.|++..+.+.. ..+.+.+-|..+..
T Consensus 218 g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 218 GNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred CCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 7765555443 58888887763321110111111 233467788898888774 44889999988863
No 366
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.47 E-value=0.00043 Score=52.56 Aligned_cols=105 Identities=14% Similarity=0.247 Sum_probs=64.3
Q ss_pred cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEE-EEEeCCCCEEEEEecCCeEEEE
Q 038537 38 HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSC-MAFYHAEGLLYTGSFDKTVKAW 116 (358)
Q Consensus 38 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~~~~~dg~i~iw 116 (358)
-+..++.|+.+|.|.+|+........... ..-...|-+ +.-..++.+..+++.||.|+.|
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~-------------------~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~ 129 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRV-------------------CSGEESIDLGIPNGRDSSLGCVGAQDGRIRAC 129 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhh-------------------hcccccceeccccccccceeEEeccCCceeee
Confidence 46689999999999999987322111100 111122222 2223355688899999999999
Q ss_pred EccCCcccccccccccc-cCeEEEEEcCCCCEEEEE--eCCCcEEEEEce
Q 038537 117 RVLDKRCTCVDSFVAHE-SNVNAIVVNQDDGFVFTC--SSDGSVKIWRRV 163 (358)
Q Consensus 117 d~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~~wd~~ 163 (358)
++...+ .+.....|+ .++........+..+..+ +.|..++.|++.
T Consensus 130 n~~p~k--~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 130 NIKPNK--VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccCc--eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 998776 444444555 455555555555566655 666666666654
No 367
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.049 Score=47.08 Aligned_cols=144 Identities=10% Similarity=0.145 Sum_probs=94.1
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeeccc-ceEEEEec-------CCEEEEEeCCceEEEEecccccccccccccccCCC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHG-EVRAILAH-------DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~-~v~~i~~~-------~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
|.++.....++-.|++.|+.+...+-|.. .+..+.++ ...=+.|-.|..|.-||.+-....
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~----------- 417 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN----------- 417 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcc-----------
Confidence 44566666788889999999999888877 44444443 223345667888888997732211
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS 153 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 153 (358)
.+.....+.+ .......|.+-..+| ++++|+.+|.|++||--..+ ....+.+...+|..+..+.+|.+|++.+
T Consensus 418 --kl~~~q~kqy-~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~--AKTAlPgLG~~I~hVdvtadGKwil~Tc- 490 (644)
T KOG2395|consen 418 --KLAVVQSKQY-STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRR--AKTALPGLGDAIKHVDVTADGKWILATC- 490 (644)
T ss_pred --eeeeeecccc-ccccccceeeecCCc-eEEEeecCCcEEeehhhhhh--hhhcccccCCceeeEEeeccCcEEEEec-
Confidence 0011111111 112335566655444 79999999999999973333 4556778889999999999999887655
Q ss_pred CCcEEEEEce
Q 038537 154 DGSVKIWRRV 163 (358)
Q Consensus 154 dg~i~~wd~~ 163 (358)
+..+.+-++.
T Consensus 491 ~tyLlLi~t~ 500 (644)
T KOG2395|consen 491 KTYLLLIDTL 500 (644)
T ss_pred ccEEEEEEEe
Confidence 5667666654
No 368
>PHA02790 Kelch-like protein; Provisional
Probab=97.40 E-value=0.029 Score=50.03 Aligned_cols=185 Identities=11% Similarity=0.095 Sum_probs=93.4
Q ss_pred CCCEEEEEecCC-----eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC--CcEEEEEceecCCcceee
Q 038537 100 AEGLLYTGSFDK-----TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD--GSVKIWRRVYRENSHTLT 172 (358)
Q Consensus 100 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~~ 172 (358)
++..++.|+.++ .+..||..++++..+..+.........+. -++...+.|+.+ ..+..||..++ .+...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n--~W~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDA--AWVNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCC--eEEEC
Confidence 455667777543 57788988877655554432222222222 256777777754 35777776432 22222
Q ss_pred eeecccCCceeEEEEeecCCCcEEEEeecCC---cEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeE
Q 038537 173 MTLKFQQSSVNALALSSFFDNYFLYSGSSDG---SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTI 249 (358)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 249 (358)
..+...... .+++.. ++...+.|+.++ .+..||.++.. ......+............++.+.+.|+ .+
T Consensus 347 ~~l~~~r~~-~~~~~~---~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~ 417 (480)
T PHA02790 347 PSLLKPRCN-PAVASI---NNVIYVIGGHSETDTTTEYLLPNHDQ--WQFGPSTYYPHYKSCALVFGRRLFLVGR---NA 417 (480)
T ss_pred CCCCCCCcc-cEEEEE---CCEEEEecCcCCCCccEEEEeCCCCE--EEeCCCCCCccccceEEEECCEEEEECC---ce
Confidence 222211111 122222 678888887654 46778877632 2221111111111222344566666664 47
Q ss_pred EEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCC-----cEEEEEee
Q 038537 250 RVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQ-----TFKVWRVK 307 (358)
Q Consensus 250 ~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg-----~v~iw~~~ 307 (358)
.+||..+++. ..+..+....... +++.. + +++.+.||.++ .+..||..
T Consensus 418 e~ydp~~~~W--~~~~~m~~~r~~~-~~~v~-~------~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 418 EFYCESSNTW--TLIDDPIYPRDNP-ELIIV-D------NKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred EEecCCCCcE--eEcCCCCCCcccc-EEEEE-C------CEEEEECCcCCCcccceEEEEECC
Confidence 7899887753 4344333222222 22222 2 67888888652 34555544
No 369
>PHA03098 kelch-like protein; Provisional
Probab=97.40 E-value=0.036 Score=50.37 Aligned_cols=188 Identities=12% Similarity=0.141 Sum_probs=94.2
Q ss_pred CCCEEEEEecCC------eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEceecCCc
Q 038537 100 AEGLLYTGSFDK------TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG-----SVKIWRRVYRENS 168 (358)
Q Consensus 100 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~ 168 (358)
++..++.|+.++ .+..||..+.++..+..+.........+.+ ++...+.|+.++ .+..||..+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~-- 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK-- 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc--
Confidence 556677776542 577889888876554444322222222222 567777777653 46677765432
Q ss_pred ceeeeeecccCCceeEEEEeecCCCcEEEEeecC------CcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEE
Q 038537 169 HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD------GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFS 242 (358)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (358)
+.....+...... .+++.. ++..++.|+.+ ..+..||..+.. ...............+...++.+++.
T Consensus 370 W~~~~~lp~~r~~-~~~~~~---~~~iYv~GG~~~~~~~~~~v~~yd~~t~~--W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 370 WREEPPLIFPRYN-PCVVNV---NNLIYVIGGISKNDELLKTVECFSLNTNK--WSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred eeeCCCcCcCCcc-ceEEEE---CCEEEEECCcCCCCcccceEEEEeCCCCe--eeecCCCCccccCceEEEECCEEEEE
Confidence 2222111111111 122222 67777777742 357888887633 22211111111111233445666677
Q ss_pred eeCC--------CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC-----CcEEEEEee
Q 038537 243 GSED--------TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD-----QTFKVWRVK 307 (358)
Q Consensus 243 ~~~d--------g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d-----g~v~iw~~~ 307 (358)
|+.+ ..+.+||..+.+. ..+..+.........+.+ + +.+++.||.+ ..|.+||+.
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~r~~~~~~~~--~------~~iyv~GG~~~~~~~~~v~~yd~~ 511 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKW--TELSSLNFPRINASLCIF--N------NKIYVVGGDKYEYYINEIEVYDDK 511 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCce--eeCCCCCcccccceEEEE--C------CEEEEEcCCcCCcccceeEEEeCC
Confidence 7643 2388899887753 223222211111112222 3 5777888765 356666655
No 370
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=97.31 E-value=0.091 Score=48.85 Aligned_cols=75 Identities=9% Similarity=0.065 Sum_probs=52.0
Q ss_pred ceEEEEEeCCCCEEEEEecCCeEEEEEccC----------Ccccc-cccc--------cccccCeEEEEEcCC---CCEE
Q 038537 91 CVSCMAFYHAEGLLYTGSFDKTVKAWRVLD----------KRCTC-VDSF--------VAHESNVNAIVVNQD---DGFV 148 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~~~-~~~~--------~~~~~~v~~~~~~~~---~~~l 148 (358)
.|..|.++|+|.+|+..|..| |.|..+.. ++... .+++ ..+...|..+.|+|. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 588999999999999888866 44444421 11000 0111 123457889999995 5789
Q ss_pred EEEeCCCcEEEEEceecC
Q 038537 149 FTCSSDGSVKIWRRVYRE 166 (358)
Q Consensus 149 ~~~~~dg~i~~wd~~~~~ 166 (358)
++-+.|+.+|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 999999999999996443
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.08 Score=43.82 Aligned_cols=118 Identities=9% Similarity=0.048 Sum_probs=68.6
Q ss_pred CceEEEEEeCCCCEEEEEec------C---CeEEEEEcc-CCcccccccccccccCeEEEEEcCCCCEEEEEeCC-CcEE
Q 038537 90 DCVSCMAFYHAEGLLYTGSF------D---KTVKAWRVL-DKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD-GSVK 158 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~------d---g~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~ 158 (358)
...+.+...|+|.+-++... + ..-.+|.+. .+. .+..+..+-..-+.|+|+||++.+..+... +.|.
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~--~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~ 188 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG--VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIH 188 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC--EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence 44567788888876554332 0 111344444 333 233333444556789999999888777654 7788
Q ss_pred EEEcee--cCCcc-eeeeeecccCCceeEEEEeecCCCcEEEEeecCC-cEEEEEcc
Q 038537 159 IWRRVY--RENSH-TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG-SINFWEKD 211 (358)
Q Consensus 159 ~wd~~~--~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~ 211 (358)
-|++.. +.... ..........+..-.++... ++.+.+++..+| .|..|+..
T Consensus 189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa--dG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA--DGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred EEecCcccCccCCcceEEEccCCCCCCCceEEeC--CCCEEEecccCCceEEEECCC
Confidence 887642 11111 11122223456667777776 777765555554 89999877
No 372
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.25 E-value=0.1 Score=44.53 Aligned_cols=194 Identities=9% Similarity=0.120 Sum_probs=79.5
Q ss_pred EEeeeCCCcEEEEeCC----Cceeeeeeee---cc-cceE---E--EEecCCEEEEE--e----CCceEEEEeccccccc
Q 038537 2 VFTGSSSTRIRVWRQP----DCVERGFIKA---RH-GEVR---A--ILAHDNMLFTT--N----KDCKIRIWNFTVSDNF 62 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~----~~~~~~~~~~---h~-~~v~---~--i~~~~~~l~s~--~----~dg~i~iw~~~~~~~~ 62 (358)
++-|-..+.|.|.|+. ..+..+.+.. +. ..+. . ..++|+.++++ . .-|-+.+.|-++.+..
T Consensus 91 i~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~ 170 (461)
T PF05694_consen 91 ILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVK 170 (461)
T ss_dssp EEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EE
T ss_pred EeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccccc
Confidence 3445577889999987 3344444432 11 1111 1 12256677765 2 2234666665544332
Q ss_pred ccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec--------------------CCeEEEEEccCCc
Q 038537 63 RTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF--------------------DKTVKAWRVLDKR 122 (358)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--------------------dg~i~iwd~~~~~ 122 (358)
..-... .+...--..+-|.|..+.++|... ..++.+||+.+.+
T Consensus 171 g~We~~-----------------~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~ 233 (461)
T PF05694_consen 171 GRWEKD-----------------RGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRK 233 (461)
T ss_dssp EE--SB------------------TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTE
T ss_pred ceeccC-----------------CCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCc
Confidence 211110 011222345566666666666532 3589999999988
Q ss_pred ccccccccc--cccCeEEEEEcC--CCCEEEEE-eCCCcEEEEEc-eecCCcceeeeeec-----------------ccC
Q 038537 123 CTCVDSFVA--HESNVNAIVVNQ--DDGFVFTC-SSDGSVKIWRR-VYRENSHTLTMTLK-----------------FQQ 179 (358)
Q Consensus 123 ~~~~~~~~~--~~~~v~~~~~~~--~~~~l~~~-~~dg~i~~wd~-~~~~~~~~~~~~~~-----------------~~~ 179 (358)
.++++.- .......|.|.. +..+=+++ .-..+|..|-- ..++-..+...... .-.
T Consensus 234 --~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P 311 (461)
T PF05694_consen 234 --LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVP 311 (461)
T ss_dssp --EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-
T ss_pred --EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCC
Confidence 4544432 223466777764 34443333 33445554432 21111111111111 113
Q ss_pred CceeEEEEeecCCCcEEEEee-cCCcEEEEEccCCcCC
Q 038537 180 SSVNALALSSFFDNYFLYSGS-SDGSINFWEKDKMSGG 216 (358)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~ 216 (358)
.-|+.+.++. |.++|..+. .+|.|+.||+.....+
T Consensus 312 ~LitDI~iSl--DDrfLYvs~W~~GdvrqYDISDP~~P 347 (461)
T PF05694_consen 312 PLITDILISL--DDRFLYVSNWLHGDVRQYDISDPFNP 347 (461)
T ss_dssp -----EEE-T--TS-EEEEEETTTTEEEEEE-SSTTS-
T ss_pred CceEeEEEcc--CCCEEEEEcccCCcEEEEecCCCCCC
Confidence 4578888887 777666554 5999999999985443
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.19 E-value=0.039 Score=43.84 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=45.5
Q ss_pred EEEeCCCCEEEEEecC-----CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEe
Q 038537 95 MAFYHAEGLLYTGSFD-----KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCS 152 (358)
Q Consensus 95 ~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 152 (358)
-.|||+|.+|+..-.| |.|-|||.+. ....+..+..|.-....+.+.+||+.++.+.
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~-~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDARE-GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEeccc-ccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 3589999998876443 7899999984 4456777888888888999999999988764
No 374
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.19 E-value=0.02 Score=49.76 Aligned_cols=157 Identities=15% Similarity=0.018 Sum_probs=90.8
Q ss_pred CCceEEEEEeCCCCEEEEEe---cC-CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEE-eCCCc--EEEEE
Q 038537 89 RDCVSCMAFYHAEGLLYTGS---FD-KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC-SSDGS--VKIWR 161 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l~~~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~--i~~wd 161 (358)
...+..-+|+|++..++..+ .. ..+.++++.+++...+..+.++. ..-.|+|||+.|+.+ ..||. |.+.|
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEEEEc
Confidence 34466678888888665542 22 46999999988855555554443 445899999877655 44665 55556
Q ss_pred ceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-CCc--EEEEEccCCcCCccccceeecccceeEEEeeeCC
Q 038537 162 RVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-DGS--INFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEK 238 (358)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (358)
+..+.. ..+....+.-..-.|+| +|+.++-.+. .|. |.+++.+.... .. ....+.....-.++|+|+
T Consensus 269 l~~~~~-----~~Lt~~~gi~~~Ps~sp--dG~~ivf~Sdr~G~p~I~~~~~~g~~~--~r-iT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 269 LDGKNL-----PRLTNGFGINTSPSWSP--DGSKIVFTSDRGGRPQIYLYDLEGSQV--TR-LTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred CCCCcc-----eecccCCccccCccCCC--CCCEEEEEeCCCCCcceEEECCCCCce--eE-eeccCCCCcCccCCCCCC
Confidence 654431 11222223333556666 8887776554 454 45555544221 11 112222223566788999
Q ss_pred EEEEeeC-CCe--EEEEEcCCCc
Q 038537 239 LIFSGSE-DTT--IRVWRRAEGG 258 (358)
Q Consensus 239 ~l~~~~~-dg~--i~iwd~~~~~ 258 (358)
+|+..+. +|. |.+.|+.++.
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCC
Confidence 8887664 344 6667776653
No 375
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.09 E-value=0.15 Score=43.56 Aligned_cols=240 Identities=10% Similarity=0.053 Sum_probs=117.4
Q ss_pred CceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccc
Q 038537 48 DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVD 127 (358)
Q Consensus 48 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 127 (358)
.+.+.+||+.+++.... ......+....|+|+|+.++... ++.|.+.+..++....+
T Consensus 22 ~~~y~i~d~~~~~~~~l---------------------~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l- 78 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPL---------------------TPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL- 78 (353)
T ss_dssp EEEEEEEETTTTEEEES---------------------S-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES-
T ss_pred ceeEEEEecCCCceEEC---------------------cCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe-
Confidence 46788999987654321 11145678899999999988875 57899998876642211
Q ss_pred ccccc----------------ccCeEEEEEcCCCCEEEEEeC-CCcEEEEEceecCCcc---------------------
Q 038537 128 SFVAH----------------ESNVNAIVVNQDDGFVFTCSS-DGSVKIWRRVYRENSH--------------------- 169 (358)
Q Consensus 128 ~~~~~----------------~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~--------------------- 169 (358)
+..+. -+.-..+.|+||+++|+.... +..|..+.+..-....
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 11110 112356889999998887654 3444444322111100
Q ss_pred -------------eeee--eecccCCceeEEEEeecCCCcEEEEeec--CC---cEEEEEccCCcCCccccceeecc--c
Q 038537 170 -------------TLTM--TLKFQQSSVNALALSSFFDNYFLYSGSS--DG---SINFWEKDKMSGGFNHGGFLQGH--C 227 (358)
Q Consensus 170 -------------~~~~--~~~~~~~~i~~~~~~~~~~~~~l~~~~~--dg---~i~i~d~~~~~~~~~~~~~~~~~--~ 227 (358)
.+.. ........+..+.|.+ ++..|+..-. +. .+.++|..++...........+- .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~--d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~ 236 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP--DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDV 236 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE--TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecC--CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceee
Confidence 0000 0012234566777777 6663433322 22 35556665532221111111110 0
Q ss_pred ceeEEEe-ee-CCEEEEeeCCCe--EEEEEcCCCceeeeeeeeecCcccceEE-EEeecccceeeeCeEEEEccC--CCc
Q 038537 228 FAVLCLV-AI-EKLIFSGSEDTT--IRVWRRAEGGCYHECLAVLDGHRGPVRC-LAASLEMEKVVMGFLVYSSSL--DQT 300 (358)
Q Consensus 228 ~~~~~~~-~~-~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~h~~~v~~-i~~~~~~~~~~~~~~l~s~~~--dg~ 300 (358)
.....+. ++ ..++.....+|. |++++...+. ...+....-.|+. +.+++++ +.+..++.. -+.
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-----~~~lT~G~~~V~~i~~~d~~~-----~~iyf~a~~~~p~~ 306 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-----PRQLTSGDWEVTSILGWDEDN-----NRIYFTANGDNPGE 306 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-----EEESS-SSS-EEEEEEEECTS-----SEEEEEESSGGTTS
T ss_pred ecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-----eeccccCceeecccceEcCCC-----CEEEEEecCCCCCc
Confidence 1122222 33 455555557775 4445555542 3344445556755 5667763 344455554 346
Q ss_pred EEEEEeeeCCCCcceeecccccC
Q 038537 301 FKVWRVKVMPDQEKTMCLDYSDY 323 (358)
Q Consensus 301 v~iw~~~~~~~~~~~~~~~~~~~ 323 (358)
-.+|.+... ......|+.....
T Consensus 307 r~lY~v~~~-~~~~~~~LT~~~~ 328 (353)
T PF00930_consen 307 RHLYRVSLD-SGGEPKCLTCEDG 328 (353)
T ss_dssp BEEEEEETT-ETTEEEESSTTSS
T ss_pred eEEEEEEeC-CCCCeEeccCCCC
Confidence 677777643 2334455554443
No 376
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0031 Score=55.12 Aligned_cols=68 Identities=18% Similarity=0.081 Sum_probs=58.1
Q ss_pred eEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceE-EEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 230 VLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVR-CLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 230 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~-~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
..-+.|.-.++|.+..+|.|.+..+.. +.+.++.-|..+++ +++|.|| |++||.|=.||+|++.|++.
T Consensus 25 ~~ewnP~~dLiA~~t~~gelli~R~n~-----qRlwtip~p~~~v~~sL~W~~D------GkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 25 RIEWNPKMDLIATRTEKGELLIHRLNW-----QRLWTIPIPGENVTASLCWRPD------GKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred EEEEcCccchhheeccCCcEEEEEecc-----ceeEeccCCCCccceeeeecCC------CCEEEEEecCCeEEEEEccC
Confidence 355566778999999999999998884 45777776777777 9999999 99999999999999999984
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.09 E-value=0.22 Score=45.43 Aligned_cols=150 Identities=10% Similarity=0.048 Sum_probs=79.6
Q ss_pred eEEEEEeCCCCEEEEEecC------------CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038537 92 VSCMAFYHAEGLLYTGSFD------------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 92 v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
.+.-.|+|+|+.|++.... +.+.+.+++.+. ... .....|..+.|+|||..++... +|.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge--~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASA--VAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCch--hhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 6778899998877666432 334444554443 111 2356799999999999888766 577777
Q ss_pred EEceecCCc-ceee--eeec-ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee
Q 038537 160 WRRVYRENS-HTLT--MTLK-FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA 235 (358)
Q Consensus 160 wd~~~~~~~-~~~~--~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (358)
=-+...... ..+. ..+. .....+..+.|.. ++. |+++..++.-.+|.+.-........ .-......+.++.-
T Consensus 473 a~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~--~~~-L~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa 548 (591)
T PRK13616 473 AVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT--GDS-LVVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAA 548 (591)
T ss_pred EEEEeCCCCceeecccEEeecccCCccccceEec--CCE-EEEEecCCCCceEEEecCCcccccc-CCCCccCceEEEec
Confidence 433221111 1111 1111 2223457888986 555 5566555555556544321111110 01112344555555
Q ss_pred eCCEEEEeeCCCeEEE
Q 038537 236 IEKLIFSGSEDTTIRV 251 (358)
Q Consensus 236 ~~~~l~~~~~dg~i~i 251 (358)
...-++....+|.+.+
T Consensus 549 ~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 549 SPSTVYVTDARAVLQL 564 (591)
T ss_pred CCceEEEEcCCceEEe
Confidence 5455666667774443
No 378
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.02 E-value=0.0035 Score=35.15 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=28.8
Q ss_pred CCCceEEEEEeCCCCEEEEEecCCeEEEEEcc
Q 038537 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVL 119 (358)
Q Consensus 88 h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 119 (358)
....|.+++|+|...+||.|+.+|.|.++.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34569999999999999999999999999983
No 379
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.98 E-value=0.22 Score=43.64 Aligned_cols=203 Identities=11% Similarity=0.049 Sum_probs=103.9
Q ss_pred ceEEEEEeCCCCEEEEE-ecCC----eEEEEEccCCccccccc-ccccccCeEEEEEcCCCCEEEEEeCCC---------
Q 038537 91 CVSCMAFYHAEGLLYTG-SFDK----TVKAWRVLDKRCTCVDS-FVAHESNVNAIVVNQDDGFVFTCSSDG--------- 155 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg--------- 155 (358)
.+....++|++++++.+ +..| .+++.|+.+++ .+.. +.. .....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~--~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK--FLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE--EEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc--CcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 34568899999988765 3333 69999999987 3322 221 1223499999988777665443
Q ss_pred --cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC----CcEEEEEccCCc-CCccccceeecccc
Q 038537 156 --SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD----GSINFWEKDKMS-GGFNHGGFLQGHCF 228 (358)
Q Consensus 156 --~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~-~~~~~~~~~~~~~~ 228 (358)
.|+.|++.+......+.............+..++ ++++++..... ..+.+.|+.... ..............
T Consensus 201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~--d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~ 278 (414)
T PF02897_consen 201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSK--DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG 278 (414)
T ss_dssp CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-T--TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS
T ss_pred CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecC--cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc
Confidence 2666666544433233332222222244566665 88887754432 347777777631 01111111222222
Q ss_pred eeEEEeeeCC-EEEEe---eCCCeEEEEEcCCCceeeeeeeeecCccc--ceEEEEeecccceeeeCeEEEEccCCCc--
Q 038537 229 AVLCLVAIEK-LIFSG---SEDTTIRVWRRAEGGCYHECLAVLDGHRG--PVRCLAASLEMEKVVMGFLVYSSSLDQT-- 300 (358)
Q Consensus 229 ~~~~~~~~~~-~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~~h~~--~v~~i~~~~~~~~~~~~~~l~s~~~dg~-- 300 (358)
....+...+. +++.. ..++.|...++...... .....+..|.. .+..+.... +.+++..-.++.
T Consensus 279 ~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~-~~~~~l~~~~~~~~l~~~~~~~-------~~Lvl~~~~~~~~~ 350 (414)
T PF02897_consen 279 VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPA-EWWTVLIPEDEDVSLEDVSLFK-------DYLVLSYRENGSSR 350 (414)
T ss_dssp -EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGG-GEEEEEE--SSSEEEEEEEEET-------TEEEEEEEETTEEE
T ss_pred eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccc-cceeEEcCCCCceeEEEEEEEC-------CEEEEEEEECCccE
Confidence 2233333344 33332 24567777788776421 01224445554 455665544 356666666665
Q ss_pred EEEEEee
Q 038537 301 FKVWRVK 307 (358)
Q Consensus 301 v~iw~~~ 307 (358)
|+++++.
T Consensus 351 l~v~~~~ 357 (414)
T PF02897_consen 351 LRVYDLD 357 (414)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 6666666
No 380
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.95 E-value=0.23 Score=43.33 Aligned_cols=178 Identities=13% Similarity=0.083 Sum_probs=87.1
Q ss_pred CceEEEEEeCCCCEEEEEecCCeEEEEEccCCc-cc---ccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceec
Q 038537 90 DCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR-CT---CVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYR 165 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 165 (358)
+.|.++.|+.+. .|+.-..||.++++|+.... .. .+....-....+....+..+| ++.-..++.+.+.+-...
T Consensus 81 ~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccc
Confidence 679999998755 56667799999999986332 00 011111112223333333345 333344555554432211
Q ss_pred CCcceeeeeec-----ccCC-ceeE-EEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCC
Q 038537 166 ENSHTLTMTLK-----FQQS-SVNA-LALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEK 238 (358)
Q Consensus 166 ~~~~~~~~~~~-----~~~~-~i~~-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (358)
........... .+.. .... ..+.. +....+....++.+.+.+-..... ........-.+++|+++
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~--~~~~~i~~~~g~~i~~i~~~~~~~------i~~~~~i~~iavSpng~ 229 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS--DRVVEILLANGETIYIIDENSFKQ------IDSDGPIIKIAVSPNGK 229 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeec--CcceEEEEecCCEEEEEEcccccc------ccCCCCeEEEEECCCCC
Confidence 10000000000 0000 1111 12222 444555555566666554333100 01112334467889999
Q ss_pred EEEEeeCCCeEEEEEcCCCceeeeeeeeecCc-ccceEEEEeecc
Q 038537 239 LIFSGSEDTTIRVWRRAEGGCYHECLAVLDGH-RGPVRCLAASLE 282 (358)
Q Consensus 239 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~ 282 (358)
++|.-..+|.+.+.+..-.+ .+..+... ......|.|.-+
T Consensus 230 ~iAl~t~~g~l~v~ssDf~~----~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 230 FIALFTDSGNLWVVSSDFSE----KLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred EEEEEECCCCEEEEECcccc----eeEEeecCcCCCCcEEEEECC
Confidence 99999999999988765542 23333222 335566777654
No 381
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.94 E-value=0.0044 Score=34.75 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=28.0
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 038537 133 ESNVNAIVVNQDDGFVFTCSSDGSVKIWRR 162 (358)
Q Consensus 133 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 162 (358)
...|.+++|+|...+|+.++.+|.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 457999999999999999999999999987
No 382
>PHA02790 Kelch-like protein; Provisional
Probab=96.94 E-value=0.24 Score=44.25 Aligned_cols=145 Identities=10% Similarity=0.084 Sum_probs=76.2
Q ss_pred CCCEEEEEecC--CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC---cEEEEEceecCCcceeeee
Q 038537 100 AEGLLYTGSFD--KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG---SVKIWRRVYRENSHTLTMT 174 (358)
Q Consensus 100 ~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~ 174 (358)
++...+.|+.+ ..+..||..++++..+..+.........+.+ ++...+.|+.++ .+..||.+++. +.....
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~~~ 393 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQ--WQFGPS 393 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCE--EEeCCC
Confidence 67777777754 3578888877776555554322222222222 577777777653 46678875432 222222
Q ss_pred ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCC-----CeE
Q 038537 175 LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSED-----TTI 249 (358)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i 249 (358)
+...... .+++. - ++...+.|+ .+.+||.++.. ......+.......-....++++.+.||.+ ..+
T Consensus 394 m~~~r~~-~~~~~-~--~~~IYv~GG---~~e~ydp~~~~--W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~v 464 (480)
T PHA02790 394 TYYPHYK-SCALV-F--GRRLFLVGR---NAEFYCESSNT--WTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTI 464 (480)
T ss_pred CCCcccc-ceEEE-E--CCEEEEECC---ceEEecCCCCc--EeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceE
Confidence 2111111 12222 2 666677664 57788887632 322222221122222334567778888754 346
Q ss_pred EEEEcCCC
Q 038537 250 RVWRRAEG 257 (358)
Q Consensus 250 ~iwd~~~~ 257 (358)
..||..++
T Consensus 465 e~Yd~~~~ 472 (480)
T PHA02790 465 EVYNNRTY 472 (480)
T ss_pred EEEECCCC
Confidence 77777765
No 383
>PLN02153 epithiospecifier protein
Probab=96.91 E-value=0.22 Score=42.41 Aligned_cols=151 Identities=7% Similarity=0.013 Sum_probs=73.3
Q ss_pred CCCEEEEEecC-----CeEEEEEccCCcccccccccc----cccCeEEEEEcCCCCEEEEEeCC-----------CcEEE
Q 038537 100 AEGLLYTGSFD-----KTVKAWRVLDKRCTCVDSFVA----HESNVNAIVVNQDDGFVFTCSSD-----------GSVKI 159 (358)
Q Consensus 100 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~~ 159 (358)
++++++.|+.+ ..+.+||+.+.++..+..+.. ....-.+++. -++.+.+.|+.+ ..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 56677777653 357889998877655443311 1111122222 255666776653 14667
Q ss_pred EEceecCCcceeeeeecc--cCCceeEEEEeecCCCcEEEEeecC-------------CcEEEEEccCCcCCccccce--
Q 038537 160 WRRVYRENSHTLTMTLKF--QQSSVNALALSSFFDNYFLYSGSSD-------------GSINFWEKDKMSGGFNHGGF-- 222 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~~~~~d-------------g~i~i~d~~~~~~~~~~~~~-- 222 (358)
||+.+.. +........ ....-.+++.. ++.+++.++.+ ..+.+||+.+.. ......
T Consensus 164 yd~~~~~--W~~l~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~--W~~~~~~g 236 (341)
T PLN02153 164 YNIADGK--WVQLPDPGENFEKRGGAGFAVV---QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK--WTEVETTG 236 (341)
T ss_pred EECCCCe--EeeCCCCCCCCCCCCcceEEEE---CCeEEEEeccccccccCCccceecCceEEEEcCCCc--EEeccccC
Confidence 7775432 221111100 01111122222 56666665432 358888887633 221111
Q ss_pred -eecccceeEEEeeeCCEEEEeeCC--------------CeEEEEEcCCCc
Q 038537 223 -LQGHCFAVLCLVAIEKLIFSGSED--------------TTIRVWRRAEGG 258 (358)
Q Consensus 223 -~~~~~~~~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~ 258 (358)
.........+...++.+++.|+.. ..+..||..+..
T Consensus 237 ~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 237 AKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred CCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccE
Confidence 111111222334456777777752 257788887763
No 384
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.24 Score=42.78 Aligned_cols=197 Identities=16% Similarity=0.151 Sum_probs=120.6
Q ss_pred eEEEEEeCCCCEE-EEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC---CCcEEEEEceecCC
Q 038537 92 VSCMAFYHAEGLL-YTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS---DGSVKIWRRVYREN 167 (358)
Q Consensus 92 v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~ 167 (358)
-..++.++.+..+ ++...++.|.+.|..+.+ ....... ......++++|++..+.++.. ++.+.+.|..+...
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~--~~~~~~v-G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNT--VLGSIPV-GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccc--eeeEeee-ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 4567888888744 444556899999977665 3333322 225678999999988777766 67888888755443
Q ss_pred cceeeeeecccCCceeEEEEeecCCCcEEEEee-cCCcEEEEEccCCcCCc-ccc-ceeecccceeEEEeeeCCEEEEee
Q 038537 168 SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS-SDGSINFWEKDKMSGGF-NHG-GFLQGHCFAVLCLVAIEKLIFSGS 244 (358)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 244 (358)
... ......+ ..+++.| ++..++... .++.|.+.|........ ... ....+..-....+.+++..+....
T Consensus 153 ~~~----~~vG~~P-~~~a~~p--~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~ 225 (381)
T COG3391 153 TAT----IPVGNTP-TGVAVDP--DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAN 225 (381)
T ss_pred EEE----EecCCCc-ceEEECC--CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEe
Confidence 332 1112223 7888888 888666555 78899999977632221 100 011222234467788888666554
Q ss_pred CC---CeEEEEEcCCCceeeeeeee-ecCcccceEEEEeecccceeeeCeEEEEc-cCCCcEEEEEeee
Q 038537 245 ED---TTIRVWRRAEGGCYHECLAV-LDGHRGPVRCLAASLEMEKVVMGFLVYSS-SLDQTFKVWRVKV 308 (358)
Q Consensus 245 ~d---g~i~iwd~~~~~~~~~~~~~-~~~h~~~v~~i~~~~~~~~~~~~~~l~s~-~~dg~v~iw~~~~ 308 (358)
.. +.+...|..++.. ... ...-......+..+|+ |..+.+. +..+.+.+-|..+
T Consensus 226 ~~~~~~~v~~id~~~~~v----~~~~~~~~~~~~~~v~~~p~------g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 226 DGSGSNNVLKIDTATGNV----TATDLPVGSGAPRGVAVDPA------GKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred ccCCCceEEEEeCCCceE----EEeccccccCCCCceeECCC------CCEEEEEecCCCeEEEEeCCC
Confidence 33 5899999888732 221 1111114567788998 6666555 3447777777664
No 385
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.0074 Score=56.26 Aligned_cols=107 Identities=16% Similarity=0.196 Sum_probs=71.8
Q ss_pred CCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcc
Q 038537 192 DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHR 271 (358)
Q Consensus 192 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~ 271 (358)
.+..++.|+..|.+...|+...-.. .........+...++++-+|..++.|-.+|.|.+||+..+ ++++.+..|.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~----k~l~~i~e~~ 172 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA----KILKVITEHG 172 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC----cceeeeeecC
Confidence 4667899999999999998763211 1111122233444666678999999999999999999998 4566666666
Q ss_pred cceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 272 GPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 272 ~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.+.+++-+.--.. .+..+.++...|. +|++.-
T Consensus 173 ap~t~vi~v~~t~---~nS~llt~D~~Gs--f~~lv~ 204 (1206)
T KOG2079|consen 173 APVTGVIFVGRTS---QNSKLLTSDTGGS--FWKLVF 204 (1206)
T ss_pred CccceEEEEEEeC---CCcEEEEccCCCc--eEEEEe
Confidence 6666654432111 0457888888777 777654
No 386
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.87 E-value=0.28 Score=43.05 Aligned_cols=220 Identities=9% Similarity=0.075 Sum_probs=108.6
Q ss_pred EEEecCCEEEEE-eCCc----eEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe
Q 038537 34 AILAHDNMLFTT-NKDC----KIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS 108 (358)
Q Consensus 34 ~i~~~~~~l~s~-~~dg----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 108 (358)
+++++++++|.+ +..| .|++.|+.+++.+.... . ......+.|.++++.|+...
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-------------------~--~~~~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-------------------E--NPKFSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-------------------E--EEESEEEEECTTSSEEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-------------------c--ccccceEEEeCCCCEEEEEE
Confidence 345578877654 3333 59999999886543211 0 11123499999988776654
Q ss_pred cC-----------CeEEEEEccCCcccccccccccccC--eEEEEEcCCCCEEEEEeCC----CcEEEEEceecC-Ccce
Q 038537 109 FD-----------KTVKAWRVLDKRCTCVDSFVAHESN--VNAIVVNQDDGFVFTCSSD----GSVKIWRRVYRE-NSHT 170 (358)
Q Consensus 109 ~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~-~~~~ 170 (358)
.+ ..|+.|.+.+........+...... ...+..++++++++..... ..+.+.|+.... ....
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~ 268 (414)
T PF02897_consen 189 FDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAK 268 (414)
T ss_dssp CSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-S
T ss_pred eCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCC
Confidence 33 2478888877653322334333322 6788899999987765433 346777775431 0112
Q ss_pred eeeeecccCCceeEEEEeecCCCcEEEEeec---CCcEEEEEccCCcCCccccceeeccc--ceeEEEeeeCCEEEEee-
Q 038537 171 LTMTLKFQQSSVNALALSSFFDNYFLYSGSS---DGSINFWEKDKMSGGFNHGGFLQGHC--FAVLCLVAIEKLIFSGS- 244 (358)
Q Consensus 171 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~- 244 (358)
+.............+... ++.+++.... .+.|...++........ ...+..+. ..+..+...+++|+...
T Consensus 269 ~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~-~~~l~~~~~~~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 269 PKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEW-WTVLIPEDEDVSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp EEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGE-EEEEE--SSSEEEEEEEEETTEEEEEEE
T ss_pred cEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccc-eeEEcCCCCceeEEEEEEECCEEEEEEE
Confidence 222122122222333332 3444443322 45677777776332111 11233332 25566666666555443
Q ss_pred CCC--eEEEEEcC-CCceeeeeeeeecCcccceEEEEeecc
Q 038537 245 EDT--TIRVWRRA-EGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 245 ~dg--~i~iwd~~-~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
.++ .|+++++. ... .....-.-.+.|..+...++
T Consensus 345 ~~~~~~l~v~~~~~~~~----~~~~~~p~~g~v~~~~~~~~ 381 (414)
T PF02897_consen 345 ENGSSRLRVYDLDDGKE----SREIPLPEAGSVSGVSGDFD 381 (414)
T ss_dssp ETTEEEEEEEETT-TEE----EEEEESSSSSEEEEEES-TT
T ss_pred ECCccEEEEEECCCCcE----EeeecCCcceEEeccCCCCC
Confidence 444 48888988 431 11111122345666665555
No 387
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.82 E-value=0.18 Score=40.25 Aligned_cols=168 Identities=6% Similarity=0.052 Sum_probs=93.7
Q ss_pred eeeecccceEEEEecC--C-EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC
Q 038537 24 FIKARHGEVRAILAHD--N-MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA 100 (358)
Q Consensus 24 ~~~~h~~~v~~i~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 100 (358)
.+.+-...+..+++++ + ++++....+.|..++.+ ++.++.... .+ .+..-.|++..+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l------------------~g-~~D~EgI~y~g~ 75 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPL------------------DG-FGDYEGITYLGN 75 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-------------------SS--SSEEEEEE-ST
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeC------------------CC-CCCceeEEEECC
Confidence 3444455688998853 3 66667778888888864 455444332 22 234677888877
Q ss_pred CCEEEEEecCCeEEEEEccCCcc----cccccc-----cccccCeEEEEEcCCCCEEEEEeCCCcEEEEEcee--cCCcc
Q 038537 101 EGLLYTGSFDKTVKAWRVLDKRC----TCVDSF-----VAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVY--RENSH 169 (358)
Q Consensus 101 ~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~--~~~~~ 169 (358)
+.++++--.++.+.++++..... .....+ ..++..+-.++|+|.++.|+++-+..-..+|.+.. .....
T Consensus 76 ~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~ 155 (248)
T PF06977_consen 76 GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDL 155 (248)
T ss_dssp TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--
T ss_pred CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccce
Confidence 87777666689999998843220 011111 13456789999999888888888887778887754 11111
Q ss_pred eeeee-----ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 170 TLTMT-----LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 170 ~~~~~-----~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
..... .......+.+++++| ..+.+++.+..+..|..+|...
T Consensus 156 ~~~~~~~~~~~~~~~~d~S~l~~~p-~t~~lliLS~es~~l~~~d~~G 202 (248)
T PF06977_consen 156 FVSDDQDLDDDKLFVRDLSGLSYDP-RTGHLLILSDESRLLLELDRQG 202 (248)
T ss_dssp EEEE-HHHH-HT--SS---EEEEET-TTTEEEEEETTTTEEEEE-TT-
T ss_pred eeccccccccccceeccccceEEcC-CCCeEEEEECCCCeEEEECCCC
Confidence 11000 112345678899998 4567777777888888888543
No 388
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.78 E-value=0.32 Score=44.68 Aligned_cols=176 Identities=10% Similarity=0.086 Sum_probs=99.5
Q ss_pred cceEEEEecCCEEEEEeCCceEEEEeccccccccccc-ccccCCCceeeeecC--CCccccCCCceEEEEEeC--CCCEE
Q 038537 30 GEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKK-VTTLPRRSSFLSFSK--SNTQQQHRDCVSCMAFYH--AEGLL 104 (358)
Q Consensus 30 ~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~--~~~~l 104 (358)
+...++.- .+++++|. .+.|.||+.+......... ............... ..+.. ..-.|+-|.... ....|
T Consensus 41 NNLtalsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVL 117 (717)
T PF08728_consen 41 NNLTALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVL 117 (717)
T ss_pred cceeEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEE
Confidence 34444444 66666655 6799999987543322100 000000000000000 00001 222355554433 45689
Q ss_pred EEEecCCeEEEEEccCCc------------------ccccccccccccCeEEEEEc--CCCCEEEEEeCCCcEEEEEcee
Q 038537 105 YTGSFDKTVKAWRVLDKR------------------CTCVDSFVAHESNVNAIVVN--QDDGFVFTCSSDGSVKIWRRVY 164 (358)
Q Consensus 105 ~~~~~dg~i~iwd~~~~~------------------~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~~wd~~~ 164 (358)
+.|.+||.|.+|.+++-- ..+...+ .....+++++++ ...++||+++....|.||-...
T Consensus 118 l~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l 196 (717)
T PF08728_consen 118 LLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL 196 (717)
T ss_pred EEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence 999999999999763210 0011111 234578999998 7888999998889999987654
Q ss_pred cCCcceeeeeecccCCceeEEEEeecCC---C-cEEEEeecCCcEEEEEc
Q 038537 165 RENSHTLTMTLKFQQSSVNALALSSFFD---N-YFLYSGSSDGSINFWEK 210 (358)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~-~~l~~~~~dg~i~i~d~ 210 (358)
......... ...+...|.+++|.+... | ..+++++-.|.+.+|++
T Consensus 197 ~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 197 VDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 321111111 112567889999987431 2 27888899999999888
No 389
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.75 E-value=0.26 Score=40.92 Aligned_cols=187 Identities=11% Similarity=0.156 Sum_probs=96.5
Q ss_pred CCCcEEEEeCCCceeeeeeeeccc---------ceEEEEe-cCCEEEEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 7 SSTRIRVWRQPDCVERGFIKARHG---------EVRAILA-HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~~h~~---------~v~~i~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
.++.+.|+|+.-...+..+..... .+..+.+ .+..+.+-+.||.+.-..++............+
T Consensus 105 dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F------ 178 (342)
T PF06433_consen 105 DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVF------ 178 (342)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEES------
T ss_pred CCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecccc------
Confidence 445566666543333333332222 2333333 346788899999999999884432221111111
Q ss_pred eeecCCCccccCCCce-EEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccc----------cccCeEEEEEcCCC
Q 038537 77 LSFSKSNTQQQHRDCV-SCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA----------HESNVNAIVVNQDD 145 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~ 145 (358)
..-.+++ ..-++...+..++--+.+|.|+--|+..........+.. ..+.-.-+++++..
T Consensus 179 ---------~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~ 249 (342)
T PF06433_consen 179 ---------DPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS 249 (342)
T ss_dssp ---------STTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred ---------CCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence 1111222 223344455555557888888888887654222222210 01233446777755
Q ss_pred CEEEEEeC---C-------CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEE-eecCCcEEEEEccCCc
Q 038537 146 GFVFTCSS---D-------GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYS-GSSDGSINFWEKDKMS 214 (358)
Q Consensus 146 ~~l~~~~~---d-------g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~ 214 (358)
+.|.+.-. + ..|.++|+.+++....+.. ...+.++.++.. +..+|++ ...++.+.+||..+++
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-----~~~~~Si~Vsqd-~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-----EHPIDSIAVSQD-DKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-----EEEESEEEEESS-SS-EEEEEETTTTEEEEEETTT--
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-----CCccceEEEccC-CCcEEEEEcCCCCeEEEEeCcCCc
Confidence 54444322 1 1477778765554443332 345778999873 3445554 4568999999999854
No 390
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.74 E-value=0.33 Score=42.02 Aligned_cols=285 Identities=11% Similarity=0.078 Sum_probs=137.9
Q ss_pred EEeeeCCCcEEEEeCCCcee----eeeeeecccceEEEEec------CCEEEEEeCCceEEEEecccccccccccccccC
Q 038537 2 VFTGSSSTRIRVWRQPDCVE----RGFIKARHGEVRAILAH------DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLP 71 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~----~~~~~~h~~~v~~i~~~------~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 71 (358)
|++||..|.+|||+...... +..-..-..+|..+... +...++.=.-..+.||.+.........
T Consensus 40 IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~------ 113 (418)
T PF14727_consen 40 IIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH------ 113 (418)
T ss_pred EEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc------
Confidence 78999999999999854331 11112235678877541 223333355678888887322111000
Q ss_pred CCceeeeecCCCccccCCCceEEEEEeC-C-CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEE
Q 038537 72 RRSSFLSFSKSNTQQQHRDCVSCMAFYH-A-EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVF 149 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 149 (358)
.....+..-..+.+....-...+..|-. . ..+|..-+.||.+.+++-+.-. ....+.. ---...+.|.+..+.|+
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~-~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPD-FLLPGPLCYCPRTDSFV 190 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCC-CCCCcCeEEeecCCEEE
Confidence 0000000000011111111122222211 2 3578888999999999976543 1222221 11223467888888999
Q ss_pred EEeCCCcEEEEEceecCC-----------------cceeeeeecc-cCCceeEEEEeec--CCCcEEEEeecCCcEEEEE
Q 038537 150 TCSSDGSVKIWRRVYREN-----------------SHTLTMTLKF-QQSSVNALALSSF--FDNYFLYSGSSDGSINFWE 209 (358)
Q Consensus 150 ~~~~dg~i~~wd~~~~~~-----------------~~~~~~~~~~-~~~~i~~~~~~~~--~~~~~l~~~~~dg~i~i~d 209 (358)
+++.+..+..|....-.. ...+...... -...+..+..... .....++.| ...+.+.+
T Consensus 191 t~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg--er~Lf~l~ 268 (418)
T PF14727_consen 191 TASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG--ERSLFCLK 268 (418)
T ss_pred EecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe--cceEEEEc
Confidence 999998999886421100 0001000000 1223333333321 112223322 23444444
Q ss_pred ccCCcCCccccceeecccceeEEEee----eC---CEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeec-
Q 038537 210 KDKMSGGFNHGGFLQGHCFAVLCLVA----IE---KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASL- 281 (358)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~- 281 (358)
-.. .......+.........+.. .+ ..++.++.++.+.||.-.+- +...+....+| ++....
T Consensus 269 ~~G---~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L------~WsA~l~~~PV-al~v~~~ 338 (418)
T PF14727_consen 269 DNG---SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTL------VWSAQLPHVPV-ALSVANF 338 (418)
T ss_pred CCC---eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeE------EEecCCCCCCE-EEEeccc
Confidence 321 12222223222222221111 22 25888899999999965432 33332233333 333322
Q ss_pred -ccceeeeCeEEEEccCCCcEEEEEeeeCCCC
Q 038537 282 -EMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQ 312 (358)
Q Consensus 282 -~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 312 (358)
+. ...|++-+.+|.+.+-=+-+.|..
T Consensus 339 ~~~-----~G~IV~Ls~~G~L~v~YLGTdPs~ 365 (418)
T PF14727_consen 339 NGL-----KGLIVSLSDEGQLSVSYLGTDPSL 365 (418)
T ss_pred CCC-----CceEEEEcCCCcEEEEEeCCCCcc
Confidence 21 358999999999999888776543
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.66 E-value=0.34 Score=44.29 Aligned_cols=103 Identities=10% Similarity=-0.015 Sum_probs=61.6
Q ss_pred CceEEEEEeCCCCEEEEEe------cCC--eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC-------
Q 038537 90 DCVSCMAFYHAEGLLYTGS------FDK--TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD------- 154 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------- 154 (358)
..+...+++|+|+.++... .|. .|.+++.. +. . ..+.. ....+.-.|+|+|..+.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~--~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GV--A-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Cc--c-eeeec-CCCCCCceECCCCCceEEEecCcceEEEe
Confidence 3578899999999877655 243 45555542 22 1 12211 2237788999998877776533
Q ss_pred -----CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEE
Q 038537 155 -----GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINF 207 (358)
Q Consensus 155 -----g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i 207 (358)
+.+.+.++..++... .....|..+.|+| ||..++... +|.|++
T Consensus 425 ~~~~~gql~~~~vd~ge~~~-------~~~g~Issl~wSp--DG~RiA~i~-~g~v~V 472 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS-------RVPGPISELQLSR--DGVRAAMII-GGKVYL 472 (591)
T ss_pred ccCCCceEEEEeccCchhhh-------ccCCCcCeEEECC--CCCEEEEEE-CCEEEE
Confidence 122222222111100 2245799999999 999888765 477776
No 392
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.26 Score=39.64 Aligned_cols=268 Identities=9% Similarity=0.079 Sum_probs=144.8
Q ss_pred EeeeCCCcEEEEeCCCceeeeeeee--cccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 3 FTGSSSTRIRVWRQPDCVERGFIKA--RHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 3 ~tg~~dg~v~vw~~~~~~~~~~~~~--h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
..+..+.-++|.|+.+......+.. -.+--.++...|++...+..|.-+-+.|+.+.........
T Consensus 100 yvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagr------------- 166 (370)
T COG5276 100 YVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGR------------- 166 (370)
T ss_pred EEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeee-------------
Confidence 3444555689999876554332221 1244557777899999998777777889876543211110
Q ss_pred CCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW 160 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 160 (358)
.......-..++. .|++-..+..|+-+.+.|+.....+.+..-......+.++..+++..+++... --+.+-
T Consensus 167 ----ya~~~~d~~~v~I--SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvliv 238 (370)
T COG5276 167 ----YALPGGDTHDVAI--SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIV 238 (370)
T ss_pred ----eccCCCCceeEEE--ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEE
Confidence 0111222345555 46677777889999999998765322222222233688888887666555543 336666
Q ss_pred EceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEE
Q 038537 161 RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLI 240 (358)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (358)
|.........+-.........++.+.. .+++......+.-+.+-|+.....++.... +.-.......+...++++
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~V----s~~~~Yvadga~gl~~idisnp~spfl~ss-~~t~g~~a~gi~ay~~y~ 313 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPV----SGEYAYVADGAKGLPIIDISNPPSPFLSSS-LDTAGYQAAGIRAYGNYN 313 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceec----ccceeeeeccccCceeEeccCCCCCchhcc-ccCCCccccceEEecCee
Confidence 654333222221111111122232333 466777777777788888887544333221 111111223444456666
Q ss_pred EEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 241 FSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 241 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
..+..+ ...+-+....+ ......+....+.+.+.+-+ .+.+.+...++-+.||+..
T Consensus 314 yiadkn-~g~vV~~s~~s----~m~~~~g~~ti~~s~~v~~~------~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 314 YIADKN-TGAVVDASPPS----MMDKRPGRPTIGQSCDVSVD------TQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred EeccCC-ceEEEeCCChh----hcccccCcceEeeecceEEE------eeEEEEeecCCCEEEEEec
Confidence 666655 44555555432 11122222223333333433 5578888899999999863
No 393
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.63 E-value=0.39 Score=41.49 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=66.4
Q ss_pred ceEEEEecCCEEEEEeCCceEEE---Eeccccccc-ccccccccCCCceeeeecCCCccccC-CCceEEEEEeC------
Q 038537 31 EVRAILAHDNMLFTTNKDCKIRI---WNFTVSDNF-RTKKVTTLPRRSSFLSFSKSNTQQQH-RDCVSCMAFYH------ 99 (358)
Q Consensus 31 ~v~~i~~~~~~l~s~~~dg~i~i---w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~------ 99 (358)
...+++++++.|+.|..+..+.+ |+....... ..+.. .....+... ...|+++.+-|
T Consensus 5 ~~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~------------~~~g~l~~~~~e~ITsi~clpl~s~~~ 72 (415)
T PF14655_consen 5 CSISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSI------------SWSGPLDDEPGECITSILCLPLSSQKR 72 (415)
T ss_pred ceEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEE------------EeeeeccCCCCCEEEEEEEEEeecccc
Confidence 34567788888888877766655 543221110 00000 000111111 14567666643
Q ss_pred -----CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCC---------CEEEEEeCCCcEEEEE
Q 038537 100 -----AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD---------GFVFTCSSDGSVKIWR 161 (358)
Q Consensus 100 -----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~~wd 161 (358)
|...++.|..+|.|++|.- ++. .+..-.-|..+|..|.+.... +.|..... +.|.+.|
T Consensus 73 s~~~~dw~~I~VG~ssG~vrfyte-~G~--LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Id 144 (415)
T PF14655_consen 73 STGGPDWTCIAVGTSSGYVRFYTE-NGV--LLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIID 144 (415)
T ss_pred cCCCCCcEEEEEEecccEEEEEec-cch--HHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEe
Confidence 3568999999999999986 455 455555688999999875311 34444444 5566665
No 394
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.61 E-value=0.21 Score=43.22 Aligned_cols=155 Identities=10% Similarity=0.050 Sum_probs=90.5
Q ss_pred CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeec---CCCcEEEEeecCCcEEEEEccCCcCCcc--
Q 038537 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSF---FDNYFLYSGSSDGSINFWEKDKMSGGFN-- 218 (358)
Q Consensus 144 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~-- 218 (358)
+...|++|+..|.++||+.........-...-.....+|..+..... .+...|++ =.-..+.+|.+....+...
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 34689999999999999985544222111111223567777766531 23344444 4567788888854332211
Q ss_pred ---ccceeecccceeEEEe----e----e-CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeeccccee
Q 038537 219 ---HGGFLQGHCFAVLCLV----A----I-EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKV 286 (358)
Q Consensus 219 ---~~~~~~~~~~~~~~~~----~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 286 (358)
.......|...-.+++ + . ..+|++=+.||.+.+|+-..- .....+.. .---..+.+.+.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~----~f~~~lp~-~llPgPl~Y~~~---- 185 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF----AFSRFLPD-FLLPGPLCYCPR---- 185 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE----EEEEEcCC-CCCCcCeEEeec----
Confidence 1111222322222221 1 1 368888999999999997764 22223322 111234577777
Q ss_pred eeCeEEEEccCCCcEEEEEeeeCC
Q 038537 287 VMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 287 ~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
.+.|++++.+..|.-|+.....
T Consensus 186 --tDsfvt~sss~~l~~Yky~~La 207 (418)
T PF14727_consen 186 --TDSFVTASSSWTLECYKYQDLA 207 (418)
T ss_pred --CCEEEEecCceeEEEecHHHhh
Confidence 5689999999999999876543
No 395
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=96.60 E-value=0.36 Score=40.69 Aligned_cols=65 Identities=8% Similarity=0.042 Sum_probs=37.3
Q ss_pred CCCEEEEEec-----CCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc----EEEEEceec
Q 038537 100 AEGLLYTGSF-----DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS----VKIWRRVYR 165 (358)
Q Consensus 100 ~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----i~~wd~~~~ 165 (358)
++++.+.|+. ...+..||+.+.++..+..+.... .....+...++.+.+.|+.++. +.+||+.+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 5666666664 246888999888876655443211 1112222235677777776543 457777543
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.51 E-value=0.092 Score=45.50 Aligned_cols=148 Identities=15% Similarity=0.199 Sum_probs=93.8
Q ss_pred CCCCEE-EEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEE-----EEeecCCcEEEEEccCCcCC
Q 038537 143 QDDGFV-FTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFL-----YSGSSDGSINFWEKDKMSGG 216 (358)
Q Consensus 143 ~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-----~~~~~dg~i~i~d~~~~~~~ 216 (358)
.+.++| ..+.....++-.|++.++. ....+.+.. |.-+.+.|...+..| +.|-.|..|.-||.+-....
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKI----VeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKI----VEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred cccceEeeCCCCcCcceeeeccccee----eeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence 344444 4555566788888866653 333443443 777777774333333 45666888999998853221
Q ss_pred ccccceeeccc----ceeEEEee-eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeE
Q 038537 217 FNHGGFLQGHC----FAVLCLVA-IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFL 291 (358)
Q Consensus 217 ~~~~~~~~~~~----~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~ 291 (358)
......+|. ....|+.. ...+|++|+.+|.||+||- .+. +....+++-..+|..|..+.+ |++
T Consensus 418 --kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~---~AKTAlPgLG~~I~hVdvtad------GKw 485 (644)
T KOG2395|consen 418 --KLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGR---RAKTALPGLGDAIKHVDVTAD------GKW 485 (644)
T ss_pred --eeeeeeccccccccccceeeecCCceEEEeecCCcEEeehh-hhh---hhhhcccccCCceeeEEeecc------CcE
Confidence 111122222 22344444 4579999999999999998 332 345567788889999999999 777
Q ss_pred EEEccCCCcEEEEEeee
Q 038537 292 VYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 292 l~s~~~dg~v~iw~~~~ 308 (358)
|+..+ +..+.+-++.-
T Consensus 486 il~Tc-~tyLlLi~t~~ 501 (644)
T KOG2395|consen 486 ILATC-KTYLLLIDTLI 501 (644)
T ss_pred EEEec-ccEEEEEEEec
Confidence 76665 45777777654
No 397
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=96.47 E-value=0.47 Score=40.47 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=24.4
Q ss_pred CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC
Q 038537 111 KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 111 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 154 (358)
..+.+||..+.++..+..+......-.+++. -++++.+.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~-~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVH-KGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEE-ECCEEEEEeeee
Confidence 4688999998887665544321111222222 256777777653
No 398
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.38 Score=38.71 Aligned_cols=158 Identities=10% Similarity=0.142 Sum_probs=96.5
Q ss_pred CceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcc
Q 038537 90 DCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSH 169 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 169 (358)
+-+..+.++ +++...+..+.-++|.|+.+...+.+..+....+--.++.. .|++..++..|.-+.+.|+.+.. ..
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdps-sP 161 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPS-SP 161 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCC-Cc
Confidence 335566664 45677777888899999988764333333333344455555 48888888867778888986553 23
Q ss_pred eeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeE
Q 038537 170 TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTI 249 (358)
Q Consensus 170 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 249 (358)
.+..........-..++++ |++-..+..|+-+.+-|+.....+........ ...+...++.+++....-.+.-+
T Consensus 162 ~lagrya~~~~d~~~v~IS----Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~--g~g~~sv~vsdnr~y~vvy~egv 235 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS----GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT--GPGTYSVSVSDNRAYLVVYDEGV 235 (370)
T ss_pred eeeeeeccCCCCceeEEEe----cCeEEEEEeCCCeEEEEccCCCCCeEEEEEec--CCceEEEEecCCeeEEEEcccce
Confidence 3333444344444566664 67778888899999999988543332221111 12445555555555444445557
Q ss_pred EEEEcCCCc
Q 038537 250 RVWRRAEGG 258 (358)
Q Consensus 250 ~iwd~~~~~ 258 (358)
.+-|..+.+
T Consensus 236 livd~s~~s 244 (370)
T COG5276 236 LIVDVSGPS 244 (370)
T ss_pred EEEecCCCC
Confidence 777777653
No 399
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.33 E-value=0.99 Score=42.68 Aligned_cols=207 Identities=9% Similarity=0.022 Sum_probs=109.3
Q ss_pred cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEe----------------CCC
Q 038537 38 HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFY----------------HAE 101 (358)
Q Consensus 38 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----------------~~~ 101 (358)
.++.++.++.++.|.-.|..+++.+............ ..| .....+++. ..+
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~-----------~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~ 260 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG-----------RQH-QTCRGVSYYDAPAAAAGPAAPAAPADCA 260 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc-----------ccc-ccccceEEecCCcccccccccccccccC
Confidence 3677888888899999999999888765543211100 000 001112221 134
Q ss_pred CEEEEEecCCeEEEEEccCCcccccccccccccCe-------------EEEEEcC--CCCEEEEEeC----------CCc
Q 038537 102 GLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNV-------------NAIVVNQ--DDGFVFTCSS----------DGS 156 (358)
Q Consensus 102 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-------------~~~~~~~--~~~~l~~~~~----------dg~ 156 (358)
..++.++.|+.+.-.|.++++ .+-.+. ..+.| ..+.-.| .+..+++|+. +|.
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk--~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGK--LCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred CEEEEecCCCeEEEEECCCCC--EEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE
Confidence 578888899999999999887 343321 11111 0111112 2345666643 688
Q ss_pred EEEEEceecCCcceeeeeecccC-------------Cce-eEEEEeecCCCcEEEEeec------------------CCc
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQ-------------SSV-NALALSSFFDNYFLYSGSS------------------DGS 204 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~-------------~~i-~~~~~~~~~~~~~l~~~~~------------------dg~ 204 (358)
|+-+|.++++..+.......... ..+ ...++++ ...+++.+.. .+.
T Consensus 338 I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~--~~glvy~ptGn~~pd~~g~~r~~~~n~y~~s 415 (764)
T TIGR03074 338 IRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDE--KLGLVYLPMGNQTPDQWGGDRTPADEKYSSS 415 (764)
T ss_pred EEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcC--CCCeEEEeCCCccccccCCccccCcccccce
Confidence 99999999887665542110000 011 2223333 3333333221 234
Q ss_pred EEEEEccCCcCCcccccee------e-cccceeEEEee-eC---CEEEEeeCCCeEEEEEcCCCceee
Q 038537 205 INFWEKDKMSGGFNHGGFL------Q-GHCFAVLCLVA-IE---KLIFSGSEDTTIRVWRRAEGGCYH 261 (358)
Q Consensus 205 i~i~d~~~~~~~~~~~~~~------~-~~~~~~~~~~~-~~---~~l~~~~~dg~i~iwd~~~~~~~~ 261 (358)
|.-.|.++++......... . ........+.. ++ ..++.++.+|.++++|.++++.+.
T Consensus 416 lvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 416 LVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred EEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 5555555544333221100 0 00111223333 44 388999999999999999997544
No 400
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.31 E-value=1 Score=42.59 Aligned_cols=190 Identities=12% Similarity=0.046 Sum_probs=103.3
Q ss_pred EEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC-----------C---cEEEEEceecCCc
Q 038537 103 LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD-----------G---SVKIWRRVYRENS 168 (358)
Q Consensus 103 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g---~i~~wd~~~~~~~ 168 (358)
.|+++.. +.+++..++.-+...+++.. -......+++.+....+.+.+.. . .++++|-.+-+..
T Consensus 686 ~l~~~~~-~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 686 SLASANG-GALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred eEEEecC-CceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 4555443 55777776654422334432 23445667777644444443321 1 2444443222111
Q ss_pred ceeeeeecccCCceeEEEEeecCCCcEEEEeec----------CCcEEEEEccCCcCCccccceeecccceeEEEe-eeC
Q 038537 169 HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS----------DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV-AIE 237 (358)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 237 (358)
.............+.++.|...+ +.++++|.. .|.|.+|.+.... ..+..... .-.+.+.++. ++|
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~-~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~-~L~~v~e~-~v~Gav~aL~~fng 840 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDP-NTYYVVGTGLVYPDENEPVNGRIIVFEFEELN-SLELVAET-VVKGAVYALVEFNG 840 (1096)
T ss_pred eeccccccceeeeeeeeeecCCC-ceEEEEEEEeeccCCCCcccceEEEEEEecCC-ceeeeeee-eeccceeehhhhCC
Confidence 10000001112344555566522 667777753 4778888777611 12221111 1223444543 466
Q ss_pred CEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 238 KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
+++|.- +..|++|+..+. +.++.-..|..++..+...-. ++.++.|..=+++.+-..+..
T Consensus 841 kllA~I--n~~vrLye~t~~----~eLr~e~~~~~~~~aL~l~v~------gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 841 KLLAGI--NQSVRLYEWTTE----RELRIECNISNPIIALDLQVK------GDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred eEEEec--CcEEEEEEcccc----ceehhhhcccCCeEEEEEEec------CcEEEEeeccceEEEEEEecc
Confidence 666654 567999999887 446666678888999988887 789999988888887666543
No 401
>PLN02193 nitrile-specifier protein
Probab=96.26 E-value=0.8 Score=40.93 Aligned_cols=150 Identities=5% Similarity=0.030 Sum_probs=75.3
Q ss_pred CCCEEEEEecC-----CeEEEEEccCCcccccccccc--cccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEceecCC
Q 038537 100 AEGLLYTGSFD-----KTVKAWRVLDKRCTCVDSFVA--HESNVNAIVVNQDDGFVFTCSSDG-----SVKIWRRVYREN 167 (358)
Q Consensus 100 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~ 167 (358)
++.+.+.|+.+ ..+..+|+.+.++..+..... ....-.++.. -++.+.+.|+.++ .+..||+.+..
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~- 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK- 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-
Confidence 55666777654 358889998887665544311 1111122222 2456666776543 35667765432
Q ss_pred cceeeeee---cccCCceeEEEEeecCCCcEEEEeecC----CcEEEEEccCCcCCcccccee---ecccceeEEEeeeC
Q 038537 168 SHTLTMTL---KFQQSSVNALALSSFFDNYFLYSGSSD----GSINFWEKDKMSGGFNHGGFL---QGHCFAVLCLVAIE 237 (358)
Q Consensus 168 ~~~~~~~~---~~~~~~i~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 237 (358)
+...... ...... ..++.. ++.+++.++.+ ..+.+||+.+.. ....... ........+...++
T Consensus 306 -W~~~~~~~~~~~~R~~-~~~~~~---~gkiyviGG~~g~~~~dv~~yD~~t~~--W~~~~~~g~~P~~R~~~~~~~~~~ 378 (470)
T PLN02193 306 -WFHCSTPGDSFSIRGG-AGLEVV---QGKVWVVYGFNGCEVDDVHYYDPVQDK--WTQVETFGVRPSERSVFASAAVGK 378 (470)
T ss_pred -EEeCCCCCCCCCCCCC-cEEEEE---CCcEEEEECCCCCccCceEEEECCCCE--EEEeccCCCCCCCcceeEEEEECC
Confidence 1111110 000111 122222 56777777655 458899987733 2211111 11111122334466
Q ss_pred CEEEEeeCC--------------CeEEEEEcCCCc
Q 038537 238 KLIFSGSED--------------TTIRVWRRAEGG 258 (358)
Q Consensus 238 ~~l~~~~~d--------------g~i~iwd~~~~~ 258 (358)
++++.|+.+ ..+.+||+.+.+
T Consensus 379 ~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 379 HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred EEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 777888753 247888888774
No 402
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.23 E-value=1.1 Score=42.32 Aligned_cols=157 Identities=9% Similarity=0.078 Sum_probs=83.7
Q ss_pred EEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCC------CEEEEE
Q 038537 34 AILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAE------GLLYTG 107 (358)
Q Consensus 34 ~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------~~l~~~ 107 (358)
.+..+...++.++.++.+...++.......... ......|.|+.++|-+ ++++.|
T Consensus 494 ~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~-------------------~~~e~evaCLDisp~~d~~~~s~~~aVG 554 (1096)
T KOG1897|consen 494 VVSANASQVVVAGGGLALFYLEIEDGGLREVSH-------------------KEFEYEVACLDISPLGDAPNKSRLLAVG 554 (1096)
T ss_pred EEeecceEEEEecCccEEEEEEeeccceeeeee-------------------heecceeEEEecccCCCCCCcceEEEEE
Confidence 344456677777777777666665444211110 2345679999999742 278889
Q ss_pred ecCCeEEEEEccCCccccccc-cc--ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeE
Q 038537 108 SFDKTVKAWRVLDKRCTCVDS-FV--AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNA 184 (358)
Q Consensus 108 ~~dg~i~iwd~~~~~~~~~~~-~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~ 184 (358)
.++..+.+.-....-...... +. .-...|.-..+-.+..+|.++..||.+..|-+........-.........++.-
T Consensus 555 ~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~L 634 (1096)
T KOG1897|consen 555 LWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISL 634 (1096)
T ss_pred eecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEE
Confidence 888776665443322111111 11 122345555566678899999999999877654332211111111122334444
Q ss_pred EEEeecCCCcEEEEeecCCcEEEEEcc
Q 038537 185 LALSSFFDNYFLYSGSSDGSINFWEKD 211 (358)
Q Consensus 185 ~~~~~~~~~~~l~~~~~dg~i~i~d~~ 211 (358)
-.|+. .+..-+.+..|+-..+|.-+
T Consensus 635 r~f~s--k~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 635 RTFSS--KSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred EEEee--CCceEEEEeCCCCEEEEecC
Confidence 44544 33333333445555566544
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.22 E-value=0.25 Score=44.89 Aligned_cols=116 Identities=9% Similarity=0.102 Sum_probs=73.1
Q ss_pred ceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEc--CCCCEEEEEeCCCcEEEEEce-----
Q 038537 91 CVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVN--QDDGFVFTCSSDGSVKIWRRV----- 163 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~~wd~~----- 163 (358)
.++-+.-+.-++..++-+....+.|||.+.+..+....+ ...+.|.++.|. |+++.+++.+..+.|.++--.
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344455555455444444556899999998875555555 456889999986 588999999999999998531
Q ss_pred ecCCcceeeee--ecc-cCCceeEEEEeecCCCcEEEEeecCCcEEEEEcc
Q 038537 164 YRENSHTLTMT--LKF-QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKD 211 (358)
Q Consensus 164 ~~~~~~~~~~~--~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 211 (358)
........... ... ...+|.+..|.+ +|.+++.+ +..+.|+|-.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~--~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLK--DGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEec--CCeEEEEe--CCEEEEECCC
Confidence 11122222211 122 236788888886 66544433 3568888743
No 404
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.20 E-value=0.56 Score=43.21 Aligned_cols=126 Identities=12% Similarity=0.061 Sum_probs=76.1
Q ss_pred CceeEEEEeecCCCcEEEEeecCCcEEEEEccCCc-----------C---C--cccc-ceeecccceeEEEe--eeCCEE
Q 038537 180 SSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMS-----------G---G--FNHG-GFLQGHCFAVLCLV--AIEKLI 240 (358)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------~---~--~~~~-~~~~~~~~~~~~~~--~~~~~l 240 (358)
..|+.+.+....+...|+.+..||.|.+|.++.-. . . .... ....+.+..-++++ ...++|
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence 35666666655677899999999999999764310 0 0 0000 00111122223333 346788
Q ss_pred EEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeC-eEEEEccCCCcEEEEEee
Q 038537 241 FSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMG-FLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 241 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~-~~l~s~~~dg~v~iw~~~ 307 (358)
|+++....|.||-....... .....-..|...|.+|+|-++..... | ..|++++-.|.+.+|++.
T Consensus 181 AVSsNs~~VTVFaf~l~~~r-~~~~~s~~~~hNIP~VSFl~~~~d~~-G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDER-FYHVPSHQHSHNIPNVSFLDDDLDPN-GHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEecCCceEEEEEEeccccc-cccccccccccCCCeeEeecCCCCCc-cceEEEEEeccCcEEEEEEE
Confidence 88888888888765542110 11111123677899999998742110 2 388899999999999994
No 405
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.17 E-value=0.38 Score=41.99 Aligned_cols=149 Identities=16% Similarity=-0.002 Sum_probs=82.5
Q ss_pred ccccCeEEEEEcCCCCEEEEEeC---C-CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEe-ecCCc-
Q 038537 131 AHESNVNAIVVNQDDGFVFTCSS---D-GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSG-SSDGS- 204 (358)
Q Consensus 131 ~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~- 204 (358)
.....+..-+|+|++..++-... . ..+.++|+.++....... ....-..-+|+| +++.|+.+ ..||.
T Consensus 190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----~~g~~~~P~fsp--DG~~l~f~~~rdg~~ 262 (425)
T COG0823 190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----FNGNNGAPAFSP--DGSKLAFSSSRDGSP 262 (425)
T ss_pred ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----cCCccCCccCCC--CCCEEEEEECCCCCc
Confidence 33456677788998886554422 2 358888987776443332 234445567887 77766654 44665
Q ss_pred -EEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEee-CCCe--EEEEEcCCCceeeeeeeeecCcccceEEEEee
Q 038537 205 -INFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGS-EDTT--IRVWRRAEGGCYHECLAVLDGHRGPVRCLAAS 280 (358)
Q Consensus 205 -i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~ 280 (358)
|+++|+.... ........+.. .--.++|+|+.|+-.+ ..|. |.+++...... ...+..+ +.-..-.|+
T Consensus 263 ~iy~~dl~~~~--~~~Lt~~~gi~-~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~--~~~~~p~~S 334 (425)
T COG0823 263 DIYLMDLDGKN--LPRLTNGFGIN-TSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSG--GGNSNPVWS 334 (425)
T ss_pred cEEEEcCCCCc--ceecccCCccc-cCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccC--CCCcCccCC
Confidence 5556666533 11111112222 2457788998777554 4454 55566666532 1122222 222266799
Q ss_pred cccceeeeCeEEEEccC-CCc
Q 038537 281 LEMEKVVMGFLVYSSSL-DQT 300 (358)
Q Consensus 281 ~~~~~~~~~~~l~s~~~-dg~ 300 (358)
|+ |++|+..+. +|.
T Consensus 335 pd------G~~i~~~~~~~g~ 349 (425)
T COG0823 335 PD------GDKIVFESSSGGQ 349 (425)
T ss_pred CC------CCEEEEEeccCCc
Confidence 99 777766654 344
No 406
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=96.12 E-value=0.79 Score=39.61 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=23.2
Q ss_pred CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC
Q 038537 111 KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS 153 (358)
Q Consensus 111 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 153 (358)
..+.+||..+.++..+..+......-.++... ++++.+.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence 35889999888876554443211122233333 4566666654
No 407
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.08 E-value=0.68 Score=38.47 Aligned_cols=220 Identities=15% Similarity=0.003 Sum_probs=114.5
Q ss_pred EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccC
Q 038537 41 MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLD 120 (358)
Q Consensus 41 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 120 (358)
++.+--..+.|.-|+..+++... ..+.+.+.++..-..+..|+++.. -+.+++.++
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~----------------------~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~ 94 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRV----------------------FPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDT 94 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEE----------------------EECCCCcccceeecCCCeEEEEcc--ccEEEeccC
Confidence 34444456677777776443211 123333455555445555665443 366677655
Q ss_pred Ccc-ccccccc-c-cccCeEEEEEcCCCCEEEEEeC---------CCcEEEEEceecCCcceeeeeecccCCceeEEEEe
Q 038537 121 KRC-TCVDSFV-A-HESNVNAIVVNQDDGFVFTCSS---------DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALS 188 (358)
Q Consensus 121 ~~~-~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 188 (358)
+.. ..+.... . .....+.+...|+|.+.+.... ...=.+|.+... .........+-..-+.++|+
T Consensus 95 ~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~---g~~~~l~~~~~~~~NGla~S 171 (307)
T COG3386 95 GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD---GGVVRLLDDDLTIPNGLAFS 171 (307)
T ss_pred CceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC---CCEEEeecCcEEecCceEEC
Confidence 542 1222211 1 1245667888888887665443 011134443311 11122222334556889999
Q ss_pred ecCCCcEEEEeec-CCcEEEEEccC--CcCCccc-cceeecccc--eeEEEeeeCCEEEEeeCCC-eEEEEEcCCCceee
Q 038537 189 SFFDNYFLYSGSS-DGSINFWEKDK--MSGGFNH-GGFLQGHCF--AVLCLVAIEKLIFSGSEDT-TIRVWRRAEGGCYH 261 (358)
Q Consensus 189 ~~~~~~~l~~~~~-dg~i~i~d~~~--~~~~~~~-~~~~~~~~~--~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~ 261 (358)
| +++.|+.+.. .+.|.-|++.. ....... ......... .-.++..+|.+-+++..+| .|.+|+.. +
T Consensus 172 p--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G---- 244 (307)
T COG3386 172 P--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G---- 244 (307)
T ss_pred C--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C----
Confidence 9 8877776655 47888888763 1110110 000111111 1255666777775555554 89999998 5
Q ss_pred eeeeeecCcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 262 ECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 262 ~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
+.+..+.-....+++++|--... ..+++|+...
T Consensus 245 ~l~~~i~lP~~~~t~~~FgG~~~----~~L~iTs~~~ 277 (307)
T COG3386 245 KLLGEIKLPVKRPTNPAFGGPDL----NTLYITSARS 277 (307)
T ss_pred cEEEEEECCCCCCccceEeCCCc----CEEEEEecCC
Confidence 45555555557788888865321 3455555444
No 408
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=96.00 E-value=0.67 Score=37.68 Aligned_cols=210 Identities=15% Similarity=0.102 Sum_probs=118.0
Q ss_pred eEEEEEeCCCCEEEEEecCCeEEEEEccCC-----cccccccccc-----cccCeEEEEEcCCCC------------EEE
Q 038537 92 VSCMAFYHAEGLLYTGSFDKTVKAWRVLDK-----RCTCVDSFVA-----HESNVNAIVVNQDDG------------FVF 149 (358)
Q Consensus 92 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~-----~~~~v~~~~~~~~~~------------~l~ 149 (358)
-+.|+++|.+.+-++....+...+||.... ....+..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 578999999988888788899999998621 1112222221 234677888874332 367
Q ss_pred EEeCCCcEEEEEceecCCc--ceeeeeecc-cCCceeEEEEeecCCCcEEEEe-ecCCcEEEEEccCCcCCccccceeec
Q 038537 150 TCSSDGSVKIWRRVYRENS--HTLTMTLKF-QQSSVNALALSSFFDNYFLYSG-SSDGSINFWEKDKMSGGFNHGGFLQG 225 (358)
Q Consensus 150 ~~~~dg~i~~wd~~~~~~~--~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~ 225 (358)
.+++||+|.-|........ ......-.. ...--..+++.....+++|..+ -..++|.+||-.-.... ....+..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~--~~g~F~D 182 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPP--LPGSFID 182 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccccc--CCCCccC
Confidence 8899999999986433221 111111111 1223345666543345555554 45789999986542110 0000000
Q ss_pred c-------cceeE--------EEe---eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeee--cCcccceEEEEeecccce
Q 038537 226 H-------CFAVL--------CLV---AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVL--DGHRGPVRCLAASLEMEK 285 (358)
Q Consensus 226 ~-------~~~~~--------~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~h~~~v~~i~~~~~~~~ 285 (358)
. +..|. .+. ++...=+.|..-|.|-+||+... .++.+ .+.-..-+.|+..|..-.
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-----l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-----LLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-----EEEEeccCCcccCCceeeeChhhhC
Confidence 0 00111 111 12223334455688999998764 34333 234445577888775333
Q ss_pred eeeCeEEEEccCCCcEEEEEeee
Q 038537 286 VVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 286 ~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
...+.+|+---.||+|..+|...
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQS 280 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCC
Confidence 33367888877899999999863
No 409
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.93 E-value=0.58 Score=36.39 Aligned_cols=139 Identities=13% Similarity=0.098 Sum_probs=77.3
Q ss_pred ccCeEEEEEcCCCCEEEEEeC---------CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC
Q 038537 133 ESNVNAIVVNQDDGFVFTCSS---------DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203 (358)
Q Consensus 133 ~~~v~~~~~~~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg 203 (358)
....+.-..+|+|++++-.-. .|.++.|-.. . +. ......-..-+.++|+. ....+.++-+.+-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h---~v-~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~ 180 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--H---QV-ELIWNCVGISNGLAWDS-DAKKFYYIDSLNY 180 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--C---Cc-eeeehhccCCccccccc-cCcEEEEEccCce
Confidence 345566677899998432222 2344444321 1 11 11111223446677775 2334455556677
Q ss_pred cEEEEEccCCcCCccccce---------eecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccce
Q 038537 204 SINFWEKDKMSGGFNHGGF---------LQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPV 274 (358)
Q Consensus 204 ~i~i~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v 274 (358)
.|.-||............. .....-.-.++..+|++.++.-..|+|...|..++ +.+.+++-....|
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tG----K~L~eiklPt~qi 256 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTG----KILLEIKLPTPQI 256 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCC----cEEEEEEcCCCce
Confidence 7777774432211111000 00111112455667888888888999999999999 5566666668899
Q ss_pred EEEEeecc
Q 038537 275 RCLAASLE 282 (358)
Q Consensus 275 ~~i~~~~~ 282 (358)
++++|--.
T Consensus 257 tsccFgGk 264 (310)
T KOG4499|consen 257 TSCCFGGK 264 (310)
T ss_pred EEEEecCC
Confidence 99999743
No 410
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.92 E-value=0.56 Score=36.11 Aligned_cols=148 Identities=11% Similarity=0.120 Sum_probs=81.2
Q ss_pred CEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC------cEEEE-EceecCC-cceeee
Q 038537 102 GLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG------SVKIW-RRVYREN-SHTLTM 173 (358)
Q Consensus 102 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~~w-d~~~~~~-~~~~~~ 173 (358)
+.|+.+...+.|.+|++.+...+....+..- +.|..+.++..|+++++-=.+. .+|+| +.+.... ......
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4454446668899999996665566666543 7899999999999999875432 45665 2211100 000000
Q ss_pred ee---------------------cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCc---cccc---ee--e
Q 038537 174 TL---------------------KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGF---NHGG---FL--Q 224 (358)
Q Consensus 174 ~~---------------------~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~---~~--~ 224 (358)
.+ -.....+.+++..| -.|++ +.|+ ++.+.+|.+....... .... .+ .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~-~tG~L-lVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCP-VTGNL-LVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecC-CCCCE-EEEc-CCEEEEEEEEEEEEecccccEEechhhhhhe
Confidence 00 01234677788777 24554 4443 4578899876532210 0000 01 0
Q ss_pred cccceeEEEeeeCCEEEEeeCCCeEEEEEc
Q 038537 225 GHCFAVLCLVAIEKLIFSGSEDTTIRVWRR 254 (358)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 254 (358)
........++.-+.++|..+.. .++++.+
T Consensus 185 ~~~~~p~~v~ic~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 185 IDNFKPTQVAICEGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred ecCceEEEEEEEeeEEEEecCC-EEEEEEE
Confidence 1112234455567788777543 4666544
No 411
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.79 E-value=0.32 Score=44.26 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=51.5
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEc
Q 038537 134 SNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEK 210 (358)
Q Consensus 134 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 210 (358)
....-+.-+.-++..++-+....+.|||.+.+.. +....+ .....|..+.|...++++.+++.+....|.+|.-
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l--E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL--EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEE--EEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 3444455555455444444556799999975542 222222 3578999999999899999999999999999864
No 412
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.63 E-value=1.1 Score=37.18 Aligned_cols=158 Identities=11% Similarity=0.094 Sum_probs=72.5
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEc
Q 038537 131 AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEK 210 (358)
Q Consensus 131 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 210 (358)
.-.+.+..+.-++++.+++++.......-||.- ..... ...+.....|..+.|.| ++.+.+.+ ..|.|++=+.
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G--~~~w~--~~~r~~~~riq~~gf~~--~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPG--QTTWQ--PHNRNSSRRIQSMGFSP--DGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT---SS-E--EEE--SSS-EEEEEE-T--TS-EEEEE-TTTEEEEEE-
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCC--Cccce--EEccCccceehhceecC--CCCEEEEe-CCcEEEEccC
Confidence 345678888899999988887665555667641 11122 22233468899999998 76655544 8888888762
Q ss_pred cCCcCCccc-cceeecccceeEEEeee-CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeee
Q 038537 211 DKMSGGFNH-GGFLQGHCFAVLCLVAI-EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVM 288 (358)
Q Consensus 211 ~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~ 288 (358)
......... ..........++.+.+. ++.+.+++..|.+. .....++. ++.......-...+..|.|.+.
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGkt-W~~~~~~~~~~~n~~~i~f~~~------ 286 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKT-WQKDRVGENVPSNLYRIVFVNP------ 286 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS--EE-GGGTTSSS---EEEEEET------
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE-EeCCCCcc-ceECccccCCCCceEEEEEcCC------
Confidence 211111111 00011122334555443 24444455566443 34444431 2333333344567889999865
Q ss_pred CeEEEEccCCCcEEEE
Q 038537 289 GFLVYSSSLDQTFKVW 304 (358)
Q Consensus 289 ~~~l~s~~~dg~v~iw 304 (358)
.+-++. +.+|.|.-|
T Consensus 287 ~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 287 DKGFVL-GQDGVLLRY 301 (302)
T ss_dssp TEEEEE--STTEEEEE
T ss_pred CceEEE-CCCcEEEEe
Confidence 344444 578887665
No 413
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.62 E-value=1.1 Score=37.15 Aligned_cols=192 Identities=11% Similarity=0.043 Sum_probs=80.6
Q ss_pred eEEEEEeCCCCEEEEEecCCeEEEEEccCCc-ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcce
Q 038537 92 VSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR-CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHT 170 (358)
Q Consensus 92 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 170 (358)
...+.|..+ ..++ ++..+. .+...+.++ +..+..-..-......+....++..++ ++..|. +|....+....+
T Consensus 64 l~~I~f~~~-~g~i-vG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~--iy~T~DgG~tW~ 137 (302)
T PF14870_consen 64 LNSISFDGN-EGWI-VGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGA--IYRTTDGGKTWQ 137 (302)
T ss_dssp EEEEEEETT-EEEE-EEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT----EEEESSTTSSEE
T ss_pred EEEEEecCC-ceEE-EcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCc--EEEeCCCCCCee
Confidence 567777643 3344 445553 333333332 222221111123334444444444333 344554 444444444444
Q ss_pred eeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEE
Q 038537 171 LTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIR 250 (358)
Q Consensus 171 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~ 250 (358)
.. .......+..+...+ ++.+++++.......-||-.. ................+.+.+++.+.+.+ ..|.|+
T Consensus 138 ~~--~~~~~gs~~~~~r~~--dG~~vavs~~G~~~~s~~~G~--~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~ 210 (302)
T PF14870_consen 138 AV--VSETSGSINDITRSS--DGRYVAVSSRGNFYSSWDPGQ--TTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQ 210 (302)
T ss_dssp EE--E-S----EEEEEE-T--TS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEE
T ss_pred Ec--ccCCcceeEeEEECC--CCcEEEEECcccEEEEecCCC--ccceEEccCccceehhceecCCCCEEEEe-CCcEEE
Confidence 33 233456777777776 888888886655556777543 11222111112222334556666655544 788888
Q ss_pred EEEcCCCceee-eeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 251 VWRRAEGGCYH-ECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 251 iwd~~~~~~~~-~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
+=+.......+ +.+..+..-.-.+..++|.++ +...++|+ .|.+..
T Consensus 211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~------~~~wa~gg-~G~l~~ 257 (302)
T PF14870_consen 211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP------NEIWAVGG-SGTLLV 257 (302)
T ss_dssp EEE-TTEEEEE---B-TTSS--S-EEEEEESSS------S-EEEEES-TT-EEE
T ss_pred EccCCCCccccccccCCcccCceeeEEEEecCC------CCEEEEeC-CccEEE
Confidence 77722221111 111222223345899999988 56666665 455544
No 414
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.57 E-value=1.3 Score=37.79 Aligned_cols=55 Identities=11% Similarity=-0.007 Sum_probs=29.4
Q ss_pred CCCEEEEEecC-----------CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC
Q 038537 100 AEGLLYTGSFD-----------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 100 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 154 (358)
++.+.+.|+.+ ..+..||..+.++..+.........-.+....-++.+.+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56777777653 24778898888766554211111111111112367777777654
No 415
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.44 E-value=0.19 Score=39.46 Aligned_cols=86 Identities=10% Similarity=0.108 Sum_probs=57.3
Q ss_pred cceEEEEecCCEEEEEeCCceEEEEecccccccccc-cccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe
Q 038537 30 GEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTK-KVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS 108 (358)
Q Consensus 30 ~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 108 (358)
.++..+..++++|++...+|.+++||+.+.+..... .+...-.... .. . ......|..+.++.+|.-+++-+
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~---~~--~--~~~~~~i~~~~lt~~G~PiV~ls 85 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSP---VS--D--KSSSPNITSCSLTSNGVPIVTLS 85 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccc---cc--c--CCCCCcEEEEEEcCCCCEEEEEe
Confidence 355667888999999999999999999988765432 1111100000 00 0 04566789999998888777655
Q ss_pred cCCeEEEEEccCCcc
Q 038537 109 FDKTVKAWRVLDKRC 123 (358)
Q Consensus 109 ~dg~i~iwd~~~~~~ 123 (358)
+|....|+.+-+.+
T Consensus 86 -ng~~y~y~~~L~~W 99 (219)
T PF07569_consen 86 -NGDSYSYSPDLGCW 99 (219)
T ss_pred -CCCEEEecccccee
Confidence 47889998765554
No 416
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.38 E-value=0.15 Score=39.98 Aligned_cols=73 Identities=11% Similarity=0.165 Sum_probs=53.0
Q ss_pred eeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeee---eec-------CcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 229 AVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLA---VLD-------GHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 229 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~-------~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
.+..+..++.++++-+.+|.+++||+.+.+.....+. .+. .....|..+.++.+ |.-+++-+ +
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~------G~PiV~ls-n 86 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN------GVPIVTLS-N 86 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC------CCEEEEEe-C
Confidence 4556778899999999999999999999865333211 111 35567888999877 66777765 5
Q ss_pred CcEEEEEeee
Q 038537 299 QTFKVWRVKV 308 (358)
Q Consensus 299 g~v~iw~~~~ 308 (358)
|..+.|+...
T Consensus 87 g~~y~y~~~L 96 (219)
T PF07569_consen 87 GDSYSYSPDL 96 (219)
T ss_pred CCEEEecccc
Confidence 7888888764
No 417
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=95.25 E-value=1.8 Score=37.45 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=28.8
Q ss_pred CCCEEEEEecC-----------CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC
Q 038537 100 AEGLLYTGSFD-----------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 100 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 154 (358)
++.+.+.|+.+ ..+..||..+.++..+.........-.+....-++.+.+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 56666777653 24778898887765544211111111122221367777777754
No 418
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.24 E-value=1.8 Score=37.34 Aligned_cols=150 Identities=13% Similarity=0.061 Sum_probs=73.1
Q ss_pred cCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec
Q 038537 134 SNVNAIVVNQDDGFVFTCS-----------SDG-SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS 201 (358)
Q Consensus 134 ~~v~~~~~~~~~~~l~~~~-----------~dg-~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 201 (358)
.....|+|.++|+++++-. ..+ .|.+++-..+.-.......+...-.....+++.+ ++ +++ +..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~--~G-lyV-~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV--GG-VYV-ATP 89 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec--CC-EEE-eCC
Confidence 3456788888888776643 123 6666654332211111122222233557788876 66 444 444
Q ss_pred CCcEEEEEccCCc----CCcccccee------ecccceeEEEeeeCCEEEEeeCC-------------------CeEEEE
Q 038537 202 DGSINFWEKDKMS----GGFNHGGFL------QGHCFAVLCLVAIEKLIFSGSED-------------------TTIRVW 252 (358)
Q Consensus 202 dg~i~i~d~~~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~d-------------------g~i~iw 252 (358)
....++.|..... ....+...+ ..|...-..+.++|.+.++-+.. |.|.-+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 4333333443211 000111111 12333446677788766654421 445555
Q ss_pred EcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 253 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
+..+++. + ....++ .....++|+|+ |+++++-..+
T Consensus 170 ~pdg~~~--e--~~a~G~-rnp~Gl~~d~~------G~l~~tdn~~ 204 (367)
T TIGR02604 170 NPDGGKL--R--VVAHGF-QNPYGHSVDSW------GDVFFCDNDD 204 (367)
T ss_pred ecCCCeE--E--EEecCc-CCCccceECCC------CCEEEEccCC
Confidence 6555421 2 112233 33578999998 7777664433
No 419
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=95.24 E-value=0.68 Score=32.60 Aligned_cols=118 Identities=14% Similarity=0.063 Sum_probs=66.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEceecCCcce---eeeeecccCCceeEEEEeec---CCCcEEEEeecCCcEEEEEcc
Q 038537 138 AIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHT---LTMTLKFQQSSVNALALSSF---FDNYFLYSGSSDGSINFWEKD 211 (358)
Q Consensus 138 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~---~~~~~l~~~~~dg~i~i~d~~ 211 (358)
.-.|......|++++.-|+|.|++......... -...+-.-...|++++..+. .....|+.|+. ..+..||..
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 345666667889999999999998754322110 01111223567788876652 34667777765 579999998
Q ss_pred CCcCCccccceeeccc-ceeEEEeeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 212 KMSGGFNHGGFLQGHC-FAVLCLVAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 212 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
.....+..... .+-. ..+-.+.....-++..+.+..|.-||....
T Consensus 82 ~N~d~Fyke~~-DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~ 127 (136)
T PF14781_consen 82 NNSDLFYKEVP-DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGN 127 (136)
T ss_pred cCchhhhhhCc-cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCc
Confidence 85443332211 1111 111122222333444445677888887765
No 420
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.21 E-value=1.7 Score=36.99 Aligned_cols=271 Identities=11% Similarity=0.078 Sum_probs=115.6
Q ss_pred CEEeeeCCC--cEEEEeCCCceeeeeeeeccc--ceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 1 MVFTGSSST--RIRVWRQPDCVERGFIKARHG--EVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 1 ~l~tg~~dg--~v~vw~~~~~~~~~~~~~h~~--~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
||+++..|| .+.+.|+.+++..+.-.+... .-..++.+++.++-......|+--|+.+.+...... .
T Consensus 50 llF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~---~------ 120 (386)
T PF14583_consen 50 LLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE---V------ 120 (386)
T ss_dssp EEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE----------
T ss_pred EEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE---C------
Confidence 355666565 456667888877655553222 123455666666555555677777887765322111 1
Q ss_pred eeecCCCccccCCCceEEEEEe--CCCCEEEEE----------------------ecCCeEEEEEccCCccccccccccc
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFY--HAEGLLYTG----------------------SFDKTVKAWRVLDKRCTCVDSFVAH 132 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~~~----------------------~~dg~i~iwd~~~~~~~~~~~~~~~ 132 (358)
....+-...|. .++..++-. -..+.|.-.|+.+++ ...+...
T Consensus 121 -----------p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~---~~~v~~~ 186 (386)
T PF14583_consen 121 -----------PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE---RKVVFED 186 (386)
T ss_dssp ------------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-----EEEEEEE
T ss_pred -----------CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc---eeEEEec
Confidence 11222223332 233333221 112345556777766 2333334
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEe-----ecC
Q 038537 133 ESNVNAIVVNQDDGFVFTCSSDG-----SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSG-----SSD 202 (358)
Q Consensus 133 ~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-----~~d 202 (358)
...+..+.|+|....+++=|.+| .-|+|-+++........... .....+..=-|.| +|..|.-- +.+
T Consensus 187 ~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~--DG~~i~y~~~~~~~~~ 263 (386)
T PF14583_consen 187 TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVP--DGSTIWYDSYTPGGQD 263 (386)
T ss_dssp SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-T--TSS-EEEEEEETTT--
T ss_pred CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccC--CCCEEEEEeecCCCCc
Confidence 66788899999555444444333 23677766544333332221 1123334444555 66655432 224
Q ss_pred CcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCC----------------CeEEEEEcCCCceeeeeeee
Q 038537 203 GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSED----------------TTIRVWRRAEGGCYHECLAV 266 (358)
Q Consensus 203 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~ 266 (358)
..|.-+|+.+.... .. .......-.-.++++++++-=+.| -.|+++++..+.. ..+..
T Consensus 264 ~~i~~~d~~t~~~~--~~--~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~--~~l~~ 337 (386)
T PF14583_consen 264 FWIAGYDPDTGERR--RL--MEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF--RKLAR 337 (386)
T ss_dssp EEEEEE-TTT--EE--EE--EEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE--EEEEE
T ss_pred eEEEeeCCCCCCce--EE--EeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce--eeeee
Confidence 45666676663321 11 111111112234566666543333 2567788877642 11111
Q ss_pred -------ecCccc-ceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 267 -------LDGHRG-PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 267 -------~~~h~~-~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+.++.. .=....|+||+ ...|.++...|...||=++-
T Consensus 338 h~~sw~v~~~~~q~~hPhp~FSPDg-----k~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 338 HDTSWKVLDGDRQVTHPHPSFSPDG-----KWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp -------BTTBSSTT----EE-TTS-----SEEEEEE-TTSS-EEEEEE-
T ss_pred ccCcceeecCCCccCCCCCccCCCC-----CEEEEECCCCCCccEEEEeC
Confidence 222211 12457899994 25677888899988887764
No 421
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.17 E-value=0.1 Score=28.38 Aligned_cols=30 Identities=20% Similarity=0.208 Sum_probs=25.2
Q ss_pred ceEEEEEeCCC---CEEEEEecCCeEEEEEccC
Q 038537 91 CVSCMAFYHAE---GLLYTGSFDKTVKAWRVLD 120 (358)
Q Consensus 91 ~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~ 120 (358)
.|.++.|+|+. .+|+.+-.-|.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 58999999854 4888888889999999985
No 422
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.17 E-value=1.9 Score=37.39 Aligned_cols=91 Identities=14% Similarity=0.156 Sum_probs=54.9
Q ss_pred EEEEeCCCCEEEEEecCCeEEE---EEccC-C--cccccc----ccccc-ccCeEEEEEcC-----------CCCEEEEE
Q 038537 94 CMAFYHAEGLLYTGSFDKTVKA---WRVLD-K--RCTCVD----SFVAH-ESNVNAIVVNQ-----------DDGFVFTC 151 (358)
Q Consensus 94 ~~~~~~~~~~l~~~~~dg~i~i---wd~~~-~--~~~~~~----~~~~~-~~~v~~~~~~~-----------~~~~l~~~ 151 (358)
.++.+|++..|+.+..+..+.+ |+... + ...... .+... ...|+++.+-| |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4677899999999877766555 54311 1 100111 11111 14677776643 35789999
Q ss_pred eCCCcEEEEEceecCCcceeeeeecccCCceeEEEEee
Q 038537 152 SSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSS 189 (358)
Q Consensus 152 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 189 (358)
..+|.|++|.. ...+......|..+|..+....
T Consensus 86 ~ssG~vrfyte-----~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-----NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-----cchHHHHHhcCccceEEEEecc
Confidence 99999999974 2223333444677777776653
No 423
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.16 E-value=0.13 Score=27.96 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=25.5
Q ss_pred cCeEEEEEcCCC---CEEEEEeCCCcEEEEEcee
Q 038537 134 SNVNAIVVNQDD---GFVFTCSSDGSVKIWRRVY 164 (358)
Q Consensus 134 ~~v~~~~~~~~~---~~l~~~~~dg~i~~wd~~~ 164 (358)
+.|.++.|+|.. .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999844 4888887789999999975
No 424
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=1.2 Score=43.58 Aligned_cols=147 Identities=12% Similarity=0.201 Sum_probs=91.9
Q ss_pred eeCCCcEEEEeCCCceeeeeeeecccceEEEEe---cC-------CEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 5 GSSSTRIRVWRQPDCVERGFIKARHGEVRAILA---HD-------NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 5 g~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~---~~-------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
.+.|..+.+|+..++.....+.+-...|..+.. .+ .+++..+.--.|.++-+.-.+........
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f------ 168 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF------ 168 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc------
Confidence 357899999999998888888887777776632 22 24555555566777766533221111000
Q ss_pred eeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEcc----CC----cc--------------ccccccc-c
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVL----DK----RC--------------TCVDSFV-A 131 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~----~~--------------~~~~~~~-~ 131 (358)
.....+.-..-.|+|+....+|+.+++ +.|| .+|.+. .+ ++ +.+..+. .
T Consensus 169 -----~~~~~i~~dg~~V~~I~~t~nGRIF~~-G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~ 240 (1311)
T KOG1900|consen 169 -----NTSFKISVDGVSVNCITYTENGRIFFA-GRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGS 240 (1311)
T ss_pred -----ccceeeecCCceEEEEEeccCCcEEEe-ecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCC
Confidence 000112233456899997777876665 4555 445431 10 00 0111223 5
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEEceec
Q 038537 132 HESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYR 165 (358)
Q Consensus 132 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 165 (358)
+.++|..+......+.+.+-++.|.|.+||+...
T Consensus 241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred CCCcceeeEeccccceeeeeccCceEEEEEccCC
Confidence 6779999999988899999999999999999763
No 425
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.89 E-value=1.7 Score=35.24 Aligned_cols=166 Identities=10% Similarity=0.081 Sum_probs=102.7
Q ss_pred ccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccc--cccccCeEEEEEcCCCCEEEEEeCCCcEEEEEce
Q 038537 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF--VAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRV 163 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 163 (358)
.+-...+.++.|+|+.+.|++......-.++=..+++ .+.++ .+ -.....|.+..++++.++--.++.+.++.+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gd--lirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGD--LIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCc--eEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 3445559999999999999988887777777666676 34333 22 2234567777777777776678888888765
Q ss_pred ecCCcce-----eeee-ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccc-------cee
Q 038537 164 YRENSHT-----LTMT-LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC-------FAV 230 (358)
Q Consensus 164 ~~~~~~~-----~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-------~~~ 230 (358)
.+..... +... ....+.....++|.| ....|..+-+-.-+.||............. ...+. ..+
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~--~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~-~~~~~~~~~~f~~Dv 235 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP--VDHRLFVAKERNPIGIFEVTQSPSSLSVHA-SLDPTADRDLFVLDV 235 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCC--CCceEEEEEccCCcEEEEEecCCccccccc-ccCcccccceEeecc
Confidence 4422111 1111 111266788999998 777888887877788887764321111111 11111 112
Q ss_pred EEEee---eCCEEEEeeCCCeEEEEEcCCC
Q 038537 231 LCLVA---IEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 231 ~~~~~---~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
..+.+ .+.+++-+.+++.+.-.|....
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 22333 3567788888888888887654
No 426
>PLN02193 nitrile-specifier protein
Probab=94.88 E-value=2.7 Score=37.59 Aligned_cols=152 Identities=9% Similarity=0.009 Sum_probs=72.0
Q ss_pred CCCEEEEEecC-------CeEEEEEccCCcccccccccccc--cCe-EEEEEcCCCCEEEEEeCC-----CcEEEEEcee
Q 038537 100 AEGLLYTGSFD-------KTVKAWRVLDKRCTCVDSFVAHE--SNV-NAIVVNQDDGFVFTCSSD-----GSVKIWRRVY 164 (358)
Q Consensus 100 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~--~~v-~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~ 164 (358)
++.+++.|+.+ ..+.+||+.+.++..+....... ... .+++. -++.+.+.|+.+ ..+..||+.+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~-~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVS-IGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEE-ECCEEEEECCCCCCCCCccEEEEECCC
Confidence 34566666643 24778888887765332211001 111 11222 245666666654 3577888754
Q ss_pred cCCcceeeeeec--ccCCceeEEEEeecCCCcEEEEeecCC-----cEEEEEccCCcCCccccce---eecccceeEEEe
Q 038537 165 RENSHTLTMTLK--FQQSSVNALALSSFFDNYFLYSGSSDG-----SINFWEKDKMSGGFNHGGF---LQGHCFAVLCLV 234 (358)
Q Consensus 165 ~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~ 234 (358)
.. +....... .....-.+++.. ++.+++.|+.++ .+..||+.+.. ...... ............
T Consensus 254 ~~--W~~l~~~~~~P~~R~~h~~~~~---~~~iYv~GG~~~~~~~~~~~~yd~~t~~--W~~~~~~~~~~~~R~~~~~~~ 326 (470)
T PLN02193 254 NE--WKLLTPVEEGPTPRSFHSMAAD---EENVYVFGGVSATARLKTLDSYNIVDKK--WFHCSTPGDSFSIRGGAGLEV 326 (470)
T ss_pred CE--EEEcCcCCCCCCCccceEEEEE---CCEEEEECCCCCCCCcceEEEEECCCCE--EEeCCCCCCCCCCCCCcEEEE
Confidence 32 22211110 001111222222 567777777643 36677776632 111110 000011112223
Q ss_pred eeCCEEEEeeCC----CeEEEEEcCCCce
Q 038537 235 AIEKLIFSGSED----TTIRVWRRAEGGC 259 (358)
Q Consensus 235 ~~~~~l~~~~~d----g~i~iwd~~~~~~ 259 (358)
.++++++.++.+ ..+.+||+.+.+.
T Consensus 327 ~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 327 VQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred ECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 466777777655 4589999988753
No 427
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.87 E-value=0.087 Score=48.72 Aligned_cols=117 Identities=12% Similarity=0.108 Sum_probs=69.3
Q ss_pred EEEEEe---CCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEE-----------EcCCCCEEEEEeCCCcEE
Q 038537 93 SCMAFY---HAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIV-----------VNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 93 ~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~~l~~~~~dg~i~ 158 (358)
.-+.|. ++.-++..+..++.|++.++.+.. ...+..|...+..++ .+|||..+++++.||.++
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~---~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL---RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG 260 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHH---HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence 444444 466677888888999998887654 234455766655543 589999999999999999
Q ss_pred EEEcee-cCCcceeeeeecccCC-ceeEEEEeec-------CCCcEEEE-eecCCcEEEEEccC
Q 038537 159 IWRRVY-RENSHTLTMTLKFQQS-SVNALALSSF-------FDNYFLYS-GSSDGSINFWEKDK 212 (358)
Q Consensus 159 ~wd~~~-~~~~~~~~~~~~~~~~-~i~~~~~~~~-------~~~~~l~~-~~~dg~i~i~d~~~ 212 (358)
.|.+.- +..........+.|.. +-.|.-+... +.-.++++ ...+..+++|....
T Consensus 261 f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 998642 2223333344444542 2222222210 00112333 33456788887554
No 428
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=94.85 E-value=0.23 Score=42.43 Aligned_cols=170 Identities=14% Similarity=0.089 Sum_probs=99.5
Q ss_pred ccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeee-cc-cCCcee-EEEEeecCCCcEEEEeecCC
Q 038537 127 DSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTL-KF-QQSSVN-ALALSSFFDNYFLYSGSSDG 203 (358)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~-~~~~i~-~~~~~~~~~~~~l~~~~~dg 203 (358)
..+....+.|..+-..||++.+..-+. ..+.++++............. .+ ....|+ .+..-. .+.-+++++.||
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~--Gg~SLLv~~~dG 290 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS--GGFSLLVVHEDG 290 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh--CceeEEEEcCCC
Confidence 334445567888899999998877665 678899886543222111111 00 001122 112122 577788999999
Q ss_pred cEEEE-EccCCcC-CccccceeecccceeEEEeee--CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEe
Q 038537 204 SINFW-EKDKMSG-GFNHGGFLQGHCFAVLCLVAI--EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAA 279 (358)
Q Consensus 204 ~i~i~-d~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~ 279 (358)
.|.-| |.+.... ...+.+.+.-....+-.+.|+ .+-+++-+.+|.+.++.....+ .+- ...--..+.-+++
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~----~lL-~~~~~~~~~~~~~ 365 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEK----LLL-FERAYQAPQLVAM 365 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCc----cee-hhhhhcCcceeee
Confidence 99876 5554322 222222222223344444443 4677888889999888665542 121 1122235677899
Q ss_pred ecccceeeeCeEEEEccCCCcEEEEEeeeCCC
Q 038537 280 SLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPD 311 (358)
Q Consensus 280 ~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~ 311 (358)
||. +.+|++- ..|.++++.+++..+
T Consensus 366 Sp~------~~~Ll~e-~~gki~~~~l~Nr~P 390 (733)
T COG4590 366 SPN------QAYLLSE-DQGKIRLAQLENRNP 390 (733)
T ss_pred Ccc------cchheee-cCCceEEEEecCCCC
Confidence 999 6777765 467899999987543
No 429
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.84 E-value=0.091 Score=48.60 Aligned_cols=190 Identities=13% Similarity=0.138 Sum_probs=103.9
Q ss_pred CCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEcee--cCCcceeeee-ecccCCceeEE
Q 038537 110 DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVY--RENSHTLTMT-LKFQQSSVNAL 185 (358)
Q Consensus 110 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~--~~~~~~~~~~-~~~~~~~i~~~ 185 (358)
.+.+++-+..+... .-...++..+.|-.+.|.. +...+. -.-|.+.|||+.- ++....+... .......+.-+
T Consensus 110 ~~~vrvaN~~~sm~-~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMR-HNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV 186 (1283)
T ss_pred hhhhhhccCcchhH-HHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence 35566666544321 1123345677788888753 222222 2346788888653 2222222221 12223444555
Q ss_pred EEeec-CCCcEEEEeecCCcEEEEEccCCcCCccccceeecccc-------------eeEEEeeeCCEEEEeeCCCeEEE
Q 038537 186 ALSSF-FDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCF-------------AVLCLVAIEKLIFSGSEDTTIRV 251 (358)
Q Consensus 186 ~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~dg~i~i 251 (358)
.|.|. .+..++..+-.++.|++..+.+... ..+.+|.. .+..++|||..++.++.||.++.
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGF 261 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccce
Confidence 56553 1455666777788999887765221 11222332 23568899999999999999999
Q ss_pred EEcC-CCceeeeeeeeecCccc-ceEEEEeecccceeee---CeEEEEccC-CCcEEEEEee
Q 038537 252 WRRA-EGGCYHECLAVLDGHRG-PVRCLAASLEMEKVVM---GFLVYSSSL-DQTFKVWRVK 307 (358)
Q Consensus 252 wd~~-~~~~~~~~~~~~~~h~~-~v~~i~~~~~~~~~~~---~~~l~s~~~-dg~v~iw~~~ 307 (358)
|.+. +++...+++...+.|.+ +-.|.-++.+.....+ -.+++++++ +..+++|.-.
T Consensus 262 ~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a 323 (1283)
T KOG1916|consen 262 YQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA 323 (1283)
T ss_pred eeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence 9765 34444567788888874 3333334332111000 124555554 4458888755
No 430
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.79 E-value=1.5 Score=37.74 Aligned_cols=116 Identities=10% Similarity=0.092 Sum_probs=53.5
Q ss_pred CCCcEEEEeCCCceeeeeeeecccc--eEEEEe--c--CC-EEEEEeCCceEEEEecccccccccccccccCCCce-eee
Q 038537 7 SSTRIRVWRQPDCVERGFIKARHGE--VRAILA--H--DN-MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS-FLS 78 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~~h~~~--v~~i~~--~--~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~-~~~ 78 (358)
...++.+||+.+.+.++++.-.... ...+.| + .. -++.+.-..+|..|--.....-...++...+.... -..
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~ 299 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI 299 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence 4578999999999999998765432 334554 2 22 34444455566555442222222222222211000 000
Q ss_pred e-cCCCccccCCCceEEEEEeCCCCEEEEEe-cCCeEEEEEccCCc
Q 038537 79 F-SKSNTQQQHRDCVSCMAFYHAEGLLYTGS-FDKTVKAWRVLDKR 122 (358)
Q Consensus 79 ~-~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 122 (358)
+ .....+..-..-|+.|.+|.|.++|..+. .+|.|+.||+.+..
T Consensus 300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 0 00011122245589999999999887765 47999999998754
No 431
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.75 E-value=0.68 Score=44.41 Aligned_cols=144 Identities=11% Similarity=-0.048 Sum_probs=83.4
Q ss_pred cCeEEEEEcCCCCEEEEEe--CCCcEEEEEceecCCccee-eeee------cccCCceeEEEEeecCCCcEEEEeecCCc
Q 038537 134 SNVNAIVVNQDDGFVFTCS--SDGSVKIWRRVYRENSHTL-TMTL------KFQQSSVNALALSSFFDNYFLYSGSSDGS 204 (358)
Q Consensus 134 ~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~-~~~~------~~~~~~i~~~~~~~~~~~~~l~~~~~dg~ 204 (358)
.++..+...+|+...++.. .+-.|..||++.-...... ...+ .....-..++.|.|.. ....+++..|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-p~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-PLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-cchhhhhccccc
Confidence 4566666667765544433 3447889998754332211 1111 1122345667777733 334566778899
Q ss_pred EEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeec-CcccceEEEEeecc
Q 038537 205 INFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLD-GHRGPVRCLAASLE 282 (358)
Q Consensus 205 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~i~~~~~ 282 (358)
|++..+........ ...........++++.|..++.|-.+|++.-|...-... ..+.... .....|.+|+|...
T Consensus 180 l~V~~~~~~~~~v~--s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik--~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVT--SFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK--SEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred hhhhhhhhhhhhhc--ccCcccceeeEEeccccceeeEecCCCeEEEeeccccee--ecccCCCcCCCcceeEEEEecc
Confidence 99887665221111 112233445577788899999999999999987654311 0011111 11578999999987
No 432
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=3.6 Score=37.95 Aligned_cols=177 Identities=7% Similarity=0.023 Sum_probs=85.3
Q ss_pred CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeec
Q 038537 111 KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSF 190 (358)
Q Consensus 111 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 190 (358)
-.|+|++....- +..+.-....+-.+.|+.+ ..|++...+|++++|++....... ...........|..+.+..
T Consensus 64 ~~I~If~~sG~l---L~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~-~svg~e~~~~~I~ec~~f~- 137 (829)
T KOG2280|consen 64 PYIRIFNISGQL---LGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIES-NSVGFESQMSDIVECRFFH- 137 (829)
T ss_pred eeEEEEeccccc---hHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcc-cccccccccCceeEEEEec-
Confidence 458888876443 3333333347889999955 557777899999999974332111 1111222334455555543
Q ss_pred CCCcEEEEeecCCcEEE-EEccCCcCCccccceeecccce---eEEEeeeC--CEEEEee-CCCeEEEEEcCCCceeeee
Q 038537 191 FDNYFLYSGSSDGSINF-WEKDKMSGGFNHGGFLQGHCFA---VLCLVAIE--KLIFSGS-EDTTIRVWRRAEGGCYHEC 263 (358)
Q Consensus 191 ~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~ 263 (358)
+|-. +-..+|.+.+ -+...+. ..+.. ..+..... -.++.+.. ..++-.. ..+ ..++-..... ..
T Consensus 138 -~GVa--vlt~~g~v~~i~~~~~~~-~~~~~-diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~---~q 208 (829)
T KOG2280|consen 138 -NGVA--VLTVSGQVILINGVEEPK-LRKMP-DIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR---VQ 208 (829)
T ss_pred -CceE--EEecCCcEEEEcCCCcch-hhhCC-CCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc---cc
Confidence 4433 3333444443 3332211 01110 01111111 12222211 1111111 111 1122222211 11
Q ss_pred eeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 264 LAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 264 ~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
...+......+..+..||+ .++|+-=..+|.|.+-.++.
T Consensus 209 ~~~~~~~~~~~~ki~VS~n------~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 209 LHALSWPNSSVVKISVSPN------RRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred ccccCCCCceEEEEEEcCC------cceEEEEecCCcEEEEecch
Confidence 2222222456888899998 77888888899888877763
No 433
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.40 E-value=2.2 Score=34.33 Aligned_cols=188 Identities=10% Similarity=0.001 Sum_probs=99.3
Q ss_pred ceEEEEEeCCCCEEEEEecCC--eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCc
Q 038537 91 CVSCMAFYHAEGLLYTGSFDK--TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENS 168 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 168 (358)
-...+.|..++.++-+.+.-| .|+.+|+.+++......+.. .----.++.. ++......=.++...+||..+-+..
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence 356788867888777777666 79999999987333333322 1122334444 3344445557889999998544333
Q ss_pred ceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee---EEEee-eCCEEEEee
Q 038537 169 HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV---LCLVA-IEKLIFSGS 244 (358)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~l~~~~ 244 (358)
. .+.. ...=+.++. ++..|+.+.....++++|..+.+...... ......++ .-+.. +|...|=.-
T Consensus 124 ~----~~~y-~~EGWGLt~----dg~~Li~SDGS~~L~~~dP~~f~~~~~i~--V~~~g~pv~~LNELE~i~G~IyANVW 192 (264)
T PF05096_consen 124 G----TFPY-PGEGWGLTS----DGKRLIMSDGSSRLYFLDPETFKEVRTIQ--VTDNGRPVSNLNELEYINGKIYANVW 192 (264)
T ss_dssp E----EEE--SSS--EEEE----CSSCEEEE-SSSEEEEE-TTT-SEEEEEE---EETTEE---EEEEEEETTEEEEEET
T ss_pred E----EEec-CCcceEEEc----CCCEEEEECCccceEEECCcccceEEEEE--EEECCEECCCcEeEEEEcCEEEEEeC
Confidence 2 2222 345566663 67778887778889999987632211111 11112222 22333 333333344
Q ss_pred CCCeEEEEEcCCCceeeee-----eeeec------CcccceEEEEeecccceeeeCeEEEEcc
Q 038537 245 EDTTIRVWRRAEGGCYHEC-----LAVLD------GHRGPVRCLAASLEMEKVVMGFLVYSSS 296 (358)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~-----~~~~~------~h~~~v~~i~~~~~~~~~~~~~~l~s~~ 296 (358)
....|...|..+++..... ..... ....-.+.|++.|.. +.+++||-
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~-----~~l~vTGK 250 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPET-----DRLFVTGK 250 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTT-----TEEEEEET
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCC-----CEEEEEeC
Confidence 5556777788887432110 00000 113467899999884 46777774
No 434
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.40 E-value=2.2 Score=34.32 Aligned_cols=129 Identities=9% Similarity=0.060 Sum_probs=72.1
Q ss_pred CCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccc
Q 038537 7 SSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQ 86 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (358)
.++...+||..+.+.+..+.- .+.=+.++.+++.|+.......|.++|..+.+..+...+....
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g--------------- 171 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPY-PGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG--------------- 171 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT---------------
T ss_pred cCCeEEEEccccceEEEEEec-CCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECC---------------
Confidence 467888999999988887754 4566788899998988888889999998876655544332211
Q ss_pred cCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccc-------------cccccCeEEEEEcCCCCEEEEEe
Q 038537 87 QHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF-------------VAHESNVNAIVVNQDDGFVFTCS 152 (358)
Q Consensus 87 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~ 152 (358)
.--..++-+.+. +|...|=.=....|...|..+++......+ .....-.+.|+++|..+.|...+
T Consensus 172 ~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 172 RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 111224445554 444333333344555666666652211111 01135689999998766655544
No 435
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.20 E-value=2.4 Score=36.48 Aligned_cols=105 Identities=12% Similarity=0.117 Sum_probs=56.4
Q ss_pred ceEEEEEeCCCCEEEEEe-----------cCC-eEEEEEccC--CcccccccccccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 91 CVSCMAFYHAEGLLYTGS-----------FDK-TVKAWRVLD--KRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
....|+|.++|+++++-. ..+ .|.+++-.+ ++......+.........+++.+++ ++ +++...
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-ly-V~~~~~- 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VY-VATPPD- 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EE-EeCCCe-
Confidence 367899999998776642 223 677776543 2221223333333456889998888 44 444443
Q ss_pred EEEE-EceecC----Ccceeeeeecc----cCCceeEEEEeecCCCcEEEEee
Q 038537 157 VKIW-RRVYRE----NSHTLTMTLKF----QQSSVNALALSSFFDNYFLYSGS 200 (358)
Q Consensus 157 i~~w-d~~~~~----~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~~~~ 200 (358)
|..+ |..... ....+...+.. +......+++.| ++.+.++-+
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp--DG~LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP--DGWLYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC--CCCEEEecc
Confidence 4433 432211 11122222222 134477888988 887766554
No 436
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=3.7 Score=35.55 Aligned_cols=139 Identities=10% Similarity=0.049 Sum_probs=85.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCC
Q 038537 137 NAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGG 216 (358)
Q Consensus 137 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 216 (358)
+.+-|+. .+..+.+...|.+.=|-.........+.. --...++|.++.|++ |.+.+++--.+..|.+++.......
T Consensus 26 ngvFfDD-aNkqlfavrSggatgvvvkgpndDVpiSf-dm~d~G~I~SIkFSl--DnkilAVQR~~~~v~f~nf~~d~~~ 101 (657)
T KOG2377|consen 26 NGVFFDD-ANKQLFAVRSGGATGVVVKGPNDDVPISF-DMDDKGEIKSIKFSL--DNKILAVQRTSKTVDFCNFIPDNSQ 101 (657)
T ss_pred cceeecc-CcceEEEEecCCeeEEEEeCCCCCCCcee-eecCCCceeEEEecc--CcceEEEEecCceEEEEecCCCchh
Confidence 4455553 33333334455566665543322222211 122456999999999 9999999999999999997543333
Q ss_pred ccccceeecccceeEEEeee-CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeeccc
Q 038537 217 FNHGGFLQGHCFAVLCLVAI-EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEM 283 (358)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 283 (358)
.............+..|.|. ..-+|.-...| +-+|-....+ +.++..+.|...|+--.|.++.
T Consensus 102 l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pek---rslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 102 LEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEK---RSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred hHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhh---hhhhhhhhcccCccEEEEcccc
Confidence 33333334444567777764 34555555444 7777766553 4466667788888888898873
No 437
>PLN02153 epithiospecifier protein
Probab=94.01 E-value=3.4 Score=35.15 Aligned_cols=28 Identities=14% Similarity=0.332 Sum_probs=18.8
Q ss_pred CCCEEEEEecC-----------CeEEEEEccCCcccccc
Q 038537 100 AEGLLYTGSFD-----------KTVKAWRVLDKRCTCVD 127 (358)
Q Consensus 100 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~ 127 (358)
++++.+.|+.+ ..+.+||..+.++..+.
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~ 175 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP 175 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC
Confidence 55666777653 25778999888765544
No 438
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.93 E-value=0.92 Score=43.58 Aligned_cols=141 Identities=11% Similarity=0.030 Sum_probs=82.6
Q ss_pred EEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCC-EEEEEecCCeEEEEEccCCc
Q 038537 44 TTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEG-LLYTGSFDKTVKAWRVLDKR 122 (358)
Q Consensus 44 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 122 (358)
..+.+-.|..||+..-......... .+....+......-..++.|.|.-. ..+....|+.|++..+....
T Consensus 119 ~tsng~~v~~fD~~~fs~s~~~~~~---------pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~ 189 (1405)
T KOG3630|consen 119 STSNGEAVYSFDLEEFSESRYETTV---------PLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA 189 (1405)
T ss_pred EecCCceEEEEehHhhhhhhhhhcc---------ccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhh
Confidence 3344457888998764432211110 0111112223344567888888532 45667888999988775443
Q ss_pred ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEE
Q 038537 123 CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYS 198 (358)
Q Consensus 123 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~ 198 (358)
. .+..+ ......++++|+|.|..++.|-..|++.-|...-.. ...+..........|.++.|.. ...++++
T Consensus 190 ~-~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e~yrvl~v~Wl~--t~eflvv 260 (1405)
T KOG3630|consen 190 Q-NVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEENYRVLSVTWLS--TQEFLVV 260 (1405)
T ss_pred h-hhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccce-eecccCCCcCCCcceeEEEEec--ceeEEEE
Confidence 1 12222 345678999999999999999999999988753221 1111111111257888999885 4444443
No 439
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.90 E-value=0.0034 Score=53.37 Aligned_cols=222 Identities=13% Similarity=0.110 Sum_probs=113.8
Q ss_pred eEEEEec--CC-EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe
Q 038537 32 VRAILAH--DN-MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS 108 (358)
Q Consensus 32 v~~i~~~--~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 108 (358)
..++.+| ++ .++.+-..+.+.+||+.+......... ..|.... +.|++....++.+.
T Consensus 77 aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g------------------g~~s~sl--l~wsKg~~el~ig~ 136 (615)
T KOG2247|consen 77 ALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG------------------GTSSKSL--LAWSKGTPELVIGN 136 (615)
T ss_pred HhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc------------------CcchHHH--HhhccCCccccccc
Confidence 3345554 33 455566788999999986543221110 1122222 78888888899999
Q ss_pred cCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEe
Q 038537 109 FDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALS 188 (358)
Q Consensus 109 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~ 188 (358)
..|.+.|++..+.+ .+.....|...++++++.+.+. .+.++.|..+.+-...+.... .........+..-..++..
T Consensus 137 ~~gn~viynhgtsR--~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~~qegeta~-ltevggepdnm~~~y~k~n 212 (615)
T KOG2247|consen 137 NAGNIVIYNHGTSR--RIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVTTQEGETAS-LTEVGGEPDNMDFFYGKVN 212 (615)
T ss_pred cccceEEEeccchh--hhhhhcccccceeEEEecccce-eeecCcHHHHHHhhhccceee-eeeccCccchhhhheeeee
Confidence 99999999998876 4555545899999999998764 445555555444322111100 0000000011111122221
Q ss_pred ec-CCCcEEEEeecCCcEEEE--EccCCcCCccccceeecccceeEEEeeeCC-EEEEeeCCCeEEEEEcCCCceeeeee
Q 038537 189 SF-FDNYFLYSGSSDGSINFW--EKDKMSGGFNHGGFLQGHCFAVLCLVAIEK-LIFSGSEDTTIRVWRRAEGGCYHECL 264 (358)
Q Consensus 189 ~~-~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~ 264 (358)
.. ..+..+.+.- .|.+.+. .+.....+... .+......+.|..+-.. +|..+..-|.|..-...+.+...+..
T Consensus 213 ~w~kage~m~sVv-sgKkhl~yak~nE~D~pval--~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS~h~aeLgaeff 289 (615)
T KOG2247|consen 213 GWGKAGETMVSVV-SGKKHLMYAKYNELDEPVAL--QFQEKYGNIHCYRWYLDGYILIGFDAGYIVSISAHNAELGAEFF 289 (615)
T ss_pred ccccccceeeeee-ecHHHHHHHhhcCCCCccce--EeeecCCceeEEEEeccccccccccceeEEEEeccchHHHHHHH
Confidence 10 0222332221 1122211 11111111111 23333445566665444 67777777777777777765544444
Q ss_pred eeecCcccceEEEEeec
Q 038537 265 AVLDGHRGPVRCLAASL 281 (358)
Q Consensus 265 ~~~~~h~~~v~~i~~~~ 281 (358)
..+ .|.+.+..++.|.
T Consensus 290 qkl-dy~~aLqsiavsq 305 (615)
T KOG2247|consen 290 QKL-DYRGALQSIAVSQ 305 (615)
T ss_pred HHh-hHHhhhHHHHHHH
Confidence 444 5666666666553
No 440
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.52 E-value=5.4 Score=35.84 Aligned_cols=121 Identities=8% Similarity=0.059 Sum_probs=72.8
Q ss_pred cCCCceEEEEEeCC----CCEEEEEecCCeEEEEEccCCcc---cccccccc-c--cc--CeEEEEEcCCCCEEEEEeCC
Q 038537 87 QHRDCVSCMAFYHA----EGLLYTGSFDKTVKAWRVLDKRC---TCVDSFVA-H--ES--NVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 87 ~h~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~-~--~~--~v~~~~~~~~~~~l~~~~~d 154 (358)
|.-..|..+.|.|- ...|++.-....|.+|.+..... +.+..... . .- --..+.|+|....|++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 44455999999985 33555566678999999852210 01111111 1 11 12457899998888877766
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC-CcEEEEEccC
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD-GSINFWEKDK 212 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~ 212 (358)
..-.+++++.....-+ ... ...+.|.|.+|.. ||+.|+++-.. =.-++||-..
T Consensus 134 dvSV~~sV~~d~srVk--aDi-~~~G~IhCACWT~--DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVK--ADI-KTSGLIHCACWTK--DGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceeEeeeeeeCCceEE--Eec-cCCceEEEEEecC--cCCEEEEEeCCeEEEEEecCch
Confidence 6555666654432222 222 3468899999998 88877766433 3456787543
No 441
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.50 E-value=3.5 Score=33.54 Aligned_cols=166 Identities=11% Similarity=0.123 Sum_probs=104.4
Q ss_pred ecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEE
Q 038537 27 ARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLL 104 (358)
Q Consensus 27 ~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 104 (358)
+-...+.++.++ .+.|++....+.-.|+=...++.++...+..+. ..-.+.+..++++.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------------------DpE~Ieyig~n~fv 143 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------------------DPETIEYIGGNQFV 143 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------------------ChhHeEEecCCEEE
Confidence 334458888875 456777766666667666667777665543321 23456777777777
Q ss_pred EEEecCCeEEEEEccCCccc--------ccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeee-
Q 038537 105 YTGSFDKTVKAWRVLDKRCT--------CVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTL- 175 (358)
Q Consensus 105 ~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~- 175 (358)
++--.++.+.++.+...... .+......+.....++|+|....|+.+=+..-+.+|...............
T Consensus 144 i~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~ 223 (316)
T COG3204 144 IVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLD 223 (316)
T ss_pred EEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccC
Confidence 77777788888777654210 111111225677899999999999998888888888775333211111110
Q ss_pred -----cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 176 -----KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 176 -----~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
...-..+.++.+.+ ..+.+++-+.+++.+.-.|...
T Consensus 224 ~~~~~~~f~~DvSgl~~~~-~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 224 PTADRDLFVLDVSGLEFNA-ITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cccccceEeeccccceecC-CCCcEEEEecCCceEEEEecCC
Confidence 01124577778876 4667777788888887777665
No 442
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.30 E-value=4 Score=33.70 Aligned_cols=153 Identities=11% Similarity=0.153 Sum_probs=85.2
Q ss_pred cEEEEeCCCceeeeeeeec------ccceEEEEecC-------CEEEEE-eCCceEEEEecccccccccccccccCCCce
Q 038537 10 RIRVWRQPDCVERGFIKAR------HGEVRAILAHD-------NMLFTT-NKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 10 ~v~vw~~~~~~~~~~~~~h------~~~v~~i~~~~-------~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
.|.+||+.+.+.++.+.-. ......+..+. .++..+ +..+-|.|+|+.+++.-+.......+....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6888999999988776543 34455666543 344433 445689999999887654433322222211
Q ss_pred eeeecCCCccccCCCceEEEEEeC---CCCEEEEEecCCeEEEEEccCCc-----cc-------ccccccccccCeEEEE
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYH---AEGLLYTGSFDKTVKAWRVLDKR-----CT-------CVDSFVAHESNVNAIV 140 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~-----~~-------~~~~~~~~~~~v~~~~ 140 (358)
. .+..........+.+..++.+| +++.|+-+...+ -++|.+.+.. .. .+..+.........++
T Consensus 115 ~-~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 115 G-PFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp E-EEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE
T ss_pred c-ceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE
Confidence 1 1111111122334488888876 677787766544 3444443211 00 0111111123567788
Q ss_pred EcCCCCEEEEEeCCCcEEEEEcee
Q 038537 141 VNQDDGFVFTCSSDGSVKIWRRVY 164 (358)
Q Consensus 141 ~~~~~~~l~~~~~dg~i~~wd~~~ 164 (358)
++++|.++++--..+.|..|+...
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTT
T ss_pred ECCCCcEEEecCCCCeEEEEeCCC
Confidence 999999999999999999999764
No 443
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=7.4 Score=36.06 Aligned_cols=175 Identities=18% Similarity=0.150 Sum_probs=84.7
Q ss_pred cEEEEeCCCceeeeeeeecccceEEEEec-CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccC
Q 038537 10 RIRVWRQPDCVERGFIKARHGEVRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQH 88 (358)
Q Consensus 10 ~v~vw~~~~~~~~~~~~~h~~~v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 88 (358)
.|+|++.. |+.+..+....+.+..+.|+ ...|+....+|++.+|++-...... ... .....
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~-~sv----------------g~e~~ 126 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIES-NSV----------------GFESQ 126 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcc-ccc----------------ccccc
Confidence 35666643 44444443344477788885 5688899999999999987443211 110 00122
Q ss_pred CCceEEEEEeCCCCEEEEEecCCeEEEE-EccCCccccccccc---ccccCeEEEEEcCCC-C--EEEEEeCCCcEEEEE
Q 038537 89 RDCVSCMAFYHAEGLLYTGSFDKTVKAW-RVLDKRCTCVDSFV---AHESNVNAIVVNQDD-G--FVFTCSSDGSVKIWR 161 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~---~~~~~v~~~~~~~~~-~--~l~~~~~dg~i~~wd 161 (358)
...|..+.+..+|-.+++ .+|.+.+- +..... ...+. ...-+-.|-...+++ + .++-....-...++.
T Consensus 127 ~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~---~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q 201 (829)
T KOG2280|consen 127 MSDIVECRFFHNGVAVLT--VSGQVILINGVEEPK---LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQ 201 (829)
T ss_pred cCceeEEEEecCceEEEe--cCCcEEEEcCCCcch---hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccc
Confidence 233444455445543333 34444443 333222 22221 111111222222221 1 111111000011221
Q ss_pred ceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 162 RVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
.... ......+....+.+..+.++| +..+|+--...|.|.+-+...
T Consensus 202 ~~~~---~~q~~~~~~~~~~~~ki~VS~--n~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 202 VEES---RVQLHALSWPNSSVVKISVSP--NRRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred eecc---cccccccCCCCceEEEEEEcC--CcceEEEEecCCcEEEEecch
Confidence 1111 111111222246778888888 899999999999998887665
No 444
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.71 E-value=9.5 Score=36.41 Aligned_cols=64 Identities=5% Similarity=0.065 Sum_probs=45.3
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccc--------eEEEE------------------ecCCEEEEEeCCceEEEEe
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGE--------VRAIL------------------AHDNMLFTTNKDCKIRIWN 55 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~--------v~~i~------------------~~~~~l~s~~~dg~i~iw~ 55 (358)
|+.++.++.|.-.|..+++.+-.+...... ...++ ..++.++.++.|+.+.-.|
T Consensus 197 lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALD 276 (764)
T TIGR03074 197 LYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALD 276 (764)
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEE
Confidence 567788889999999999887776533211 11111 1345888899999999999
Q ss_pred cccccccccc
Q 038537 56 FTVSDNFRTK 65 (358)
Q Consensus 56 ~~~~~~~~~~ 65 (358)
..+++....+
T Consensus 277 A~TGk~~W~f 286 (764)
T TIGR03074 277 ADTGKLCEDF 286 (764)
T ss_pred CCCCCEEEEe
Confidence 9999877543
No 445
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.63 E-value=1.3 Score=35.59 Aligned_cols=109 Identities=10% Similarity=0.095 Sum_probs=67.9
Q ss_pred EEEEeecCCCcEEEEeecCCc-EEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCC-----CeEEEEEcCCC
Q 038537 184 ALALSSFFDNYFLYSGSSDGS-INFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSED-----TTIRVWRRAEG 257 (358)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 257 (358)
.++++|. ...-++.+-.-|+ ..++|...............-|-..--+++++|.+|++.-.| |.|-|||.+.+
T Consensus 72 gi~~~p~-~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 72 GIAFHPA-LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CeecCCC-CcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 4445542 2233333333333 457777764443333322223333334789999999876543 78999999966
Q ss_pred ceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEE
Q 038537 258 GCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304 (358)
Q Consensus 258 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw 304 (358)
++.+.++..|.-.-..+.|.+| |+.|+.+. |-|..-
T Consensus 151 ---fqrvgE~~t~GiGpHev~lm~D------Grtlvvan--GGIeth 186 (366)
T COG3490 151 ---FQRVGEFSTHGIGPHEVTLMAD------GRTLVVAN--GGIETH 186 (366)
T ss_pred ---cceecccccCCcCcceeEEecC------CcEEEEeC--Cceecc
Confidence 3668888888888889999999 77877663 444444
No 446
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.63 E-value=3.5 Score=39.55 Aligned_cols=140 Identities=10% Similarity=0.061 Sum_probs=72.6
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEee-----------cCCcEEEEEccCCcCCccccceeec
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS-----------SDGSINFWEKDKMSGGFNHGGFLQG 225 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~ 225 (358)
|++.|...+.....+........-.+..+.|+......++++|. .+|.++.|++-.......+.. ...
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh-~T~ 933 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLH-KTE 933 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeee-ccC
Confidence 56666544332222222222222345555565533332344433 245577777665333222221 223
Q ss_pred ccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 226 HCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
-...+.++.+...++++|- ...+++||+...+..++... +.-...|+.+++.- ..++.|...-.|.++.
T Consensus 934 ~~~~v~Ai~~f~~~~Lagv-G~~l~~YdlG~K~lLRk~e~--k~~p~~Is~iqt~~--------~RI~VgD~qeSV~~~~ 1002 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAGV-GRFLRLYDLGKKKLLRKCEL--KFIPNRISSIQTYG--------ARIVVGDIQESVHFVR 1002 (1205)
T ss_pred CCccceEEeccCCEEEEec-ccEEEEeeCChHHHHhhhhh--ccCceEEEEEeecc--------eEEEEeeccceEEEEE
Confidence 4567788888777777664 46799999988754333222 12345666666663 3555555555555555
Q ss_pred eee
Q 038537 306 VKV 308 (358)
Q Consensus 306 ~~~ 308 (358)
.+.
T Consensus 1003 y~~ 1005 (1205)
T KOG1898|consen 1003 YRR 1005 (1205)
T ss_pred Eec
Confidence 443
No 447
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.53 E-value=0.02 Score=48.96 Aligned_cols=157 Identities=13% Similarity=0.111 Sum_probs=99.4
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCc-EEEEeecCCcEEEEEccCCcC
Q 038537 137 NAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNY-FLYSGSSDGSINFWEKDKMSG 215 (358)
Q Consensus 137 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~ 215 (358)
....|-|.+.-++.++.+..+..||-... ..... ...+....++|.- ++. .++.+...+.+.+||+.+...
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq-----~~le~-n~tg~aldm~wDk--egdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQ-----VILEL-NPTGKALDMAWDK--EGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhcc-----eeccc-CCchhHhhhhhcc--ccchhhhhhhcCCCeeechhhhhhH
Confidence 34567777777888888999999984221 11111 1234445566665 444 444566788999999987321
Q ss_pred CccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEc
Q 038537 216 GFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSS 295 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~ 295 (358)
.....-..+......+++....++.|...|.+.|++..+. +.+..+..|..+++++++.+. .+.+.+
T Consensus 110 --qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgts----R~iiv~Gkh~RRgtq~av~lE-------d~vil~ 176 (615)
T KOG2247|consen 110 --QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTS----RRIIVMGKHQRRGTQIAVTLE-------DYVILC 176 (615)
T ss_pred --HHHhccCcchHHHHhhccCCccccccccccceEEEeccch----hhhhhhcccccceeEEEeccc-------ceeeec
Confidence 1111111233344566677788888889999999999887 445555559999999999996 466666
Q ss_pred cCCCc----------EEEEEeeeCCCCcc
Q 038537 296 SLDQT----------FKVWRVKVMPDQEK 314 (358)
Q Consensus 296 ~~dg~----------v~iw~~~~~~~~~~ 314 (358)
+.|.. +..+.+...++...
T Consensus 177 dcd~~L~v~~qegeta~ltevggepdnm~ 205 (615)
T KOG2247|consen 177 DCDNTLSVTTQEGETASLTEVGGEPDNMD 205 (615)
T ss_pred CcHHHHHHhhhccceeeeeeccCccchhh
Confidence 66644 55565555444433
No 448
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.18 E-value=11 Score=35.76 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=54.3
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEEceec--CC------cceee-ee--------ecccCCceeEEEEeecC-CCc
Q 038537 133 ESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYR--EN------SHTLT-MT--------LKFQQSSVNALALSSFF-DNY 194 (358)
Q Consensus 133 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--~~------~~~~~-~~--------~~~~~~~i~~~~~~~~~-~~~ 194 (358)
.-.|..|.++|+|.+++..+..| |.|..+... .. ..... .. .......|..+.|+|.. ++.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34688999999999999988866 445444211 00 00111 00 11334678899999843 468
Q ss_pred EEEEeecCCcEEEEEccCCc
Q 038537 195 FLYSGSSDGSINFWEKDKMS 214 (358)
Q Consensus 195 ~l~~~~~dg~i~i~d~~~~~ 214 (358)
.|++-..|+.+++||+....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 89999999999999997643
No 449
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.16 E-value=5.4 Score=32.28 Aligned_cols=153 Identities=13% Similarity=0.028 Sum_probs=83.7
Q ss_pred CeEEEEEcCCCCEEEEEe-CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEE-ccC
Q 038537 135 NVNAIVVNQDDGFVFTCS-SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWE-KDK 212 (358)
Q Consensus 135 ~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d-~~~ 212 (358)
.+.+.+++++++.++... .++.-.+|-...+....... ....+..-.|++ ++...+....+...+++. ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-----~g~~l~~PS~d~--~g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-----TGGSLTRPSWDP--DGWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-----cCCccccccccC--CCCEEEEEcCCCceEEEEecCC
Confidence 688999999999877666 23333333333332222211 234677778887 666666666666666663 222
Q ss_pred CcCCccccceeecc-cceeEEEeeeCCEEEEee---CCCeEEEEEcCCCc-----eeeeeeeeecCcccceEEEEeeccc
Q 038537 213 MSGGFNHGGFLQGH-CFAVLCLVAIEKLIFSGS---EDTTIRVWRRAEGG-----CYHECLAVLDGHRGPVRCLAASLEM 283 (358)
Q Consensus 213 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~-----~~~~~~~~~~~h~~~v~~i~~~~~~ 283 (358)
.............. ....+.++++|..++... .++.|.+=-+.... ....+..........++++.|.++
T Consensus 98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~- 176 (253)
T PF10647_consen 98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD- 176 (253)
T ss_pred CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC-
Confidence 21111111111111 344467789998776554 45777776543221 111223333344568999999998
Q ss_pred ceeeeCeEEEEccCCCc
Q 038537 284 EKVVMGFLVYSSSLDQT 300 (358)
Q Consensus 284 ~~~~~~~~l~s~~~dg~ 300 (358)
+.+++.+...+.
T Consensus 177 -----~~L~V~~~~~~~ 188 (253)
T PF10647_consen 177 -----STLVVLGRSAGG 188 (253)
T ss_pred -----CEEEEEeCCCCC
Confidence 666665554433
No 450
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.93 E-value=3.3 Score=36.38 Aligned_cols=141 Identities=8% Similarity=0.047 Sum_probs=80.9
Q ss_pred EeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec-------CCEEEEEeCCceEEEEeccccc-ccccccccccCCCc
Q 038537 3 FTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH-------DNMLFTTNKDCKIRIWNFTVSD-NFRTKKVTTLPRRS 74 (358)
Q Consensus 3 ~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~-------~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~ 74 (358)
..|+....++--|++.|+.+.....|...+....+. +..-+.|-.+..|.-.|.+... .+......
T Consensus 484 ~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK------ 557 (776)
T COG5167 484 LDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK------ 557 (776)
T ss_pred ecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh------
Confidence 345555566666777888888887777665544331 2222333334333333432211 11000000
Q ss_pred eeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 154 (358)
.+ .......|..- ....+++.|+..|-|++||--..+ ....+.+....|..+....+|.++++.|.
T Consensus 558 ---------dY-~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~r--AKtalP~lG~aIk~idvta~Gk~ilaTCk- 623 (776)
T COG5167 558 ---------DY-KTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKR--AKTALPGLGDAIKHIDVTANGKHILATCK- 623 (776)
T ss_pred ---------hc-ccccccccccc-ccCceEEEecCCCceeeehhhcch--hhhcCcccccceeeeEeecCCcEEEEeec-
Confidence 00 01111222222 245689999999999999965544 44556677889999999999998887765
Q ss_pred CcEEEEEce
Q 038537 155 GSVKIWRRV 163 (358)
Q Consensus 155 g~i~~wd~~ 163 (358)
..+.+-|++
T Consensus 624 ~yllL~d~~ 632 (776)
T COG5167 624 NYLLLTDVP 632 (776)
T ss_pred ceEEEEecc
Confidence 567777764
No 451
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=91.89 E-value=9.3 Score=34.46 Aligned_cols=157 Identities=10% Similarity=0.050 Sum_probs=83.7
Q ss_pred ccCCCceEEEEEeCCCCEEE-EEe--cCCeEEEEEccCCcccccccccccccCeEEEEEcCC----CCEEEEEeCCCcEE
Q 038537 86 QQHRDCVSCMAFYHAEGLLY-TGS--FDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD----DGFVFTCSSDGSVK 158 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~-~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~ 158 (358)
..---++..++|. ||+.++ +.- .+|.+++=|. . .+.. -..|..+.|.|- ...+++......|.
T Consensus 16 ~qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~--viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVt 85 (671)
T PF15390_consen 16 HQAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---K--VIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVT 85 (671)
T ss_pred HhhhccccceEec-CCCEEEEEeeeeeCCccccCCc---c--Eeec----cceeeeeeecCcccCCCCceEEEeccceEE
Confidence 3444578899997 665544 321 2333332221 1 2222 345899999984 33566667788999
Q ss_pred EEEceecCC-cceeeeeecc-----cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--
Q 038537 159 IWRRVYREN-SHTLTMTLKF-----QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV-- 230 (358)
Q Consensus 159 ~wd~~~~~~-~~~~~~~~~~-----~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~-- 230 (358)
+|.+..... ..+....... ..--...+.|+| ....|++-.....-.+++.+......+. .+ ...+.|
T Consensus 86 VWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP--k~~iL~VLT~~dvSV~~sV~~d~srVka--Di-~~~G~IhC 160 (671)
T PF15390_consen 86 VWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP--KKAILTVLTARDVSVLPSVHCDSSRVKA--DI-KTSGLIHC 160 (671)
T ss_pred EEEeccCccccccceeeeeeeccCCcccCCCcccccC--CCceEEEEecCceeEeeeeeeCCceEEE--ec-cCCceEEE
Confidence 999752211 1111111111 111235677888 7777777666555566676653332222 12 223334
Q ss_pred EEEeeeCCEEEEe-eCCCeEEEEEcCCC
Q 038537 231 LCLVAIEKLIFSG-SEDTTIRVWRRAEG 257 (358)
Q Consensus 231 ~~~~~~~~~l~~~-~~dg~i~iwd~~~~ 257 (358)
.|+..||+.|+++ +..=.-++||-...
T Consensus 161 ACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 161 ACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 4555678766554 34445788986543
No 452
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.76 E-value=7.2 Score=32.90 Aligned_cols=107 Identities=10% Similarity=0.097 Sum_probs=52.2
Q ss_pred CCCEEEEEecC-----CeEEEEEccCCcc----cccccccccccCeEEEEEcCCCCEEEEEeC-----CCcEEEEEceec
Q 038537 100 AEGLLYTGSFD-----KTVKAWRVLDKRC----TCVDSFVAHESNVNAIVVNQDDGFVFTCSS-----DGSVKIWRRVYR 165 (358)
Q Consensus 100 ~~~~l~~~~~d-----g~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~ 165 (358)
++.+++.|+.+ ..+..+|+.+.++ ..+..+...... .+++.. ++.+.+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~-~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFEN-GSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccC-ceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 55666777654 3567777776653 122222111111 122222 4566666664 235777887643
Q ss_pred CCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCc----EEEEEccCC
Q 038537 166 ENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGS----INFWEKDKM 213 (358)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~----i~i~d~~~~ 213 (358)
+ +.....+... ......+... ++.+++.|+.++. +..||..+.
T Consensus 150 ~--W~~~~~~p~~-~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 150 E--WFELPDFPGE-PRVQPVCVKL--QNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred C--eeECCCCCCC-CCCcceEEEE--CCEEEEEcCCCCccccceEEEecCCC
Confidence 3 2222211111 1112222222 6778888876643 567887763
No 453
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=91.72 E-value=7.7 Score=34.22 Aligned_cols=31 Identities=23% Similarity=0.536 Sum_probs=25.5
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEEcee
Q 038537 134 SNVNAIVVNQDDGFVFTCSSDGSVKIWRRVY 164 (358)
Q Consensus 134 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 164 (358)
..|..++..+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999965
No 454
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.62 E-value=7.6 Score=32.91 Aligned_cols=107 Identities=19% Similarity=0.201 Sum_probs=55.4
Q ss_pred eEEEEEeCCCCEEEEEecCCeEEEEEccCCcc-ccccc----ccccccCeEEEEEcCC---CCEEEEEeC-C------C-
Q 038537 92 VSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRC-TCVDS----FVAHESNVNAIVVNQD---DGFVFTCSS-D------G- 155 (358)
Q Consensus 92 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~----~~~~~~~v~~~~~~~~---~~~l~~~~~-d------g- 155 (358)
.+.|+|.|++++++ +...|.|++++ ..+.. ..+.. ..........++++|+ ..+|.+... . .
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 57899999987666 56699999999 33332 11211 2234567899999994 233333332 1 2
Q ss_pred -cEEEEEceecC----Ccceeeeeec---ccCCceeEEEEeecCCCcEEEEeecC
Q 038537 156 -SVKIWRRVYRE----NSHTLTMTLK---FQQSSVNALALSSFFDNYFLYSGSSD 202 (358)
Q Consensus 156 -~i~~wd~~~~~----~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~~~d 202 (358)
.|.-|...... ....+..... .....-..+.|.| ++.++++.+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp--DG~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP--DGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T--TSEEEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC--CCcEEEEeCCC
Confidence 23333332220 0111111111 1234456688988 88776665543
No 455
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.51 E-value=6 Score=35.01 Aligned_cols=77 Identities=9% Similarity=0.018 Sum_probs=49.3
Q ss_pred ceEEEEEeCCCCEEEEEecCCeEEEEEc---------cCCccccc-cc------cc--ccccCeEEEEEcCCC---CEEE
Q 038537 91 CVSCMAFYHAEGLLYTGSFDKTVKAWRV---------LDKRCTCV-DS------FV--AHESNVNAIVVNQDD---GFVF 149 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~---------~~~~~~~~-~~------~~--~~~~~v~~~~~~~~~---~~l~ 149 (358)
.|..+..++.|..++-.+.+|.+.++=. ++++.... ++ +. ...-.+...+|+|+. ..+.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4777888999999999999986655431 22221000 01 00 111235567899965 5788
Q ss_pred EEeCCCcEEEEEceecCC
Q 038537 150 TCSSDGSVKIWRRVYREN 167 (358)
Q Consensus 150 ~~~~dg~i~~wd~~~~~~ 167 (358)
.-+.|..||+||+.....
T Consensus 185 iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEecCcEEEEEecCCcch
Confidence 888999999999865443
No 456
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.32 E-value=3.9 Score=28.96 Aligned_cols=112 Identities=12% Similarity=0.065 Sum_probs=64.5
Q ss_pred EEEEeCCCCEEEEEecCCeEEEEEccCCcc------cccccccccccCeEEEEEcC-----CCCEEEEEeCCCcEEEEEc
Q 038537 94 CMAFYHAEGLLYTGSFDKTVKAWRVLDKRC------TCVDSFVAHESNVNAIVVNQ-----DDGFVFTCSSDGSVKIWRR 162 (358)
Q Consensus 94 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~~wd~ 162 (358)
.-.|......|++++.-|+|.|++...... ..+..+ .-...|++|+-.+ +...|+.|+ ...+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 345655566788899999999998764321 122222 3456788886543 345666665 456999998
Q ss_pred eecCCcceeeeeecccCCceeEEEEeecCC-CcEEEEeecCCcEEEEEccC
Q 038537 163 VYRENSHTLTMTLKFQQSSVNALALSSFFD-NYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~ 212 (358)
....... .+.-...+.++.+-...+ ..-++..+.+..|.-||...
T Consensus 81 ~~N~d~F-----yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 81 ENNSDLF-----YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred ccCchhh-----hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 6554321 122346677776643212 22344444456666666543
No 457
>PRK10115 protease 2; Provisional
Probab=90.79 E-value=15 Score=34.80 Aligned_cols=199 Identities=6% Similarity=-0.057 Sum_probs=99.6
Q ss_pred CceEEEEEeCCCCEEEEEec-----CCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC------CcEE
Q 038537 90 DCVSCMAFYHAEGLLYTGSF-----DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD------GSVK 158 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~ 158 (358)
-.+..+.++|++++|+.+.. .-.|++.|+.++. .+........ ..++|.+|++.|+....+ ..|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~--~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN--WYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC--CCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEE
Confidence 34677889999998876533 2368899998775 2222111111 458999998876665442 2566
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec---CCcEEEEEccCCcCCccccceeecccceeEEEee
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS---DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA 235 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (358)
.+++.++.....+... ....... +......++.+++..+. ++.+.+++............ .............
T Consensus 203 ~h~lgt~~~~d~lv~~--e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 278 (686)
T PRK10115 203 RHTIGTPASQDELVYE--EKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL-PRRKDHEYSLDHY 278 (686)
T ss_pred EEECCCChhHCeEEEe--eCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE-ECCCCCEEEEEeC
Confidence 6677655323333322 1122222 22222225665554433 45788888543221111110 1111111111222
Q ss_pred eCCEEEEee---CCCeEEEEEcCCCceeeeeeeeecCc-c-cceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 236 IEKLIFSGS---EDTTIRVWRRAEGGCYHECLAVLDGH-R-GPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 236 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h-~-~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
.+.+++... ....|...++.... + ...+..+ . ..|..+.+.. +.++++...+|.-+++-+.
T Consensus 279 ~~~ly~~tn~~~~~~~l~~~~~~~~~---~-~~~l~~~~~~~~i~~~~~~~-------~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 279 QHRFYLRSNRHGKNFGLYRTRVRDEQ---Q-WEELIPPRENIMLEGFTLFT-------DWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred CCEEEEEEcCCCCCceEEEecCCCcc---c-CeEEECCCCCCEEEEEEEEC-------CEEEEEEEeCCEEEEEEEc
Confidence 223332222 22334444444211 1 1223334 2 3678888874 4677888888887777665
No 458
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.77 E-value=7.7 Score=31.40 Aligned_cols=112 Identities=18% Similarity=0.127 Sum_probs=66.5
Q ss_pred ceEEEEEeCCCCEEEEEecCCeEEEEE-ccCCccccccc-ccccccCeEEEEEcCCCCEEEEEe---CCCcEEEEEceec
Q 038537 91 CVSCMAFYHAEGLLYTGSFDKTVKAWR-VLDKRCTCVDS-FVAHESNVNAIVVNQDDGFVFTCS---SDGSVKIWRRVYR 165 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~ 165 (358)
.++.-.|++++...+....+...+++. ..++....... .......|..+.++|||..++... .++.|.+--+...
T Consensus 67 ~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~ 146 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRD 146 (253)
T ss_pred ccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeC
Confidence 567778899977666666566666664 23333111111 111112899999999999887766 3577877766543
Q ss_pred CCc--ceee---eeecccCCceeEEEEeecCCCcEEEEeecCCc
Q 038537 166 ENS--HTLT---MTLKFQQSSVNALALSSFFDNYFLYSGSSDGS 204 (358)
Q Consensus 166 ~~~--~~~~---~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~ 204 (358)
... ..+. .........+..+.|.+ ++.+++.+...+.
T Consensus 147 ~~g~~~~l~~~~~~~~~~~~~v~~v~W~~--~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 147 GDGVPRRLTGPRRVAPPLLSDVTDVAWSD--DSTLVVLGRSAGG 188 (253)
T ss_pred CCCCcceeccceEecccccCcceeeeecC--CCEEEEEeCCCCC
Confidence 332 1111 11122346888999997 7766666655443
No 459
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=90.51 E-value=8.1 Score=31.23 Aligned_cols=191 Identities=10% Similarity=0.063 Sum_probs=115.2
Q ss_pred eEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCccee
Q 038537 92 VSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTL 171 (358)
Q Consensus 92 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 171 (358)
-..++-.|||..-+++...+.|--.|..+++ ....-.+....-..|...||+..-++=+.. -|.-.|.++.+ ...+
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGe--v~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e-vt~f 139 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGE--VETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE-VTRF 139 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCc--eEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc-eEEe
Confidence 4567778899888888888888888998887 332223445566788888998877764443 34444543332 2223
Q ss_pred eeeecccCCceeEEEEeecCCCcEEEEeec---------CCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEE
Q 038537 172 TMTLKFQQSSVNALALSSFFDNYFLYSGSS---------DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFS 242 (358)
Q Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (358)
....+..........|.+ .|++-+++.. .+.|++|+.- .+..-.-+|..++|.+-++
T Consensus 140 ~lp~~~a~~nlet~vfD~--~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvwya 205 (353)
T COG4257 140 PLPLEHADANLETAVFDP--WGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVWYA 205 (353)
T ss_pred ecccccCCCcccceeeCC--CccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEEEE
Confidence 333344456777888887 7877777652 1234444322 1222233577788888777
Q ss_pred eeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 243 GSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 243 ~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.-.+..|-..|..++.. +.+..-..-...-..+.-+|. +..-+|-...+.+..+|..+
T Consensus 206 slagnaiaridp~~~~a--ev~p~P~~~~~gsRriwsdpi------g~~wittwg~g~l~rfdPs~ 263 (353)
T COG4257 206 SLAGNAIARIDPFAGHA--EVVPQPNALKAGSRRIWSDPI------GRAWITTWGTGSLHRFDPSV 263 (353)
T ss_pred eccccceEEcccccCCc--ceecCCCcccccccccccCcc------CcEEEeccCCceeeEeCccc
Confidence 76777777777776632 223222232333455555565 66666666666666666543
No 460
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.44 E-value=9 Score=37.97 Aligned_cols=75 Identities=17% Similarity=0.371 Sum_probs=50.6
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCc---------------------ceeeeeecccCCceeEEEEeecC
Q 038537 133 ESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENS---------------------HTLTMTLKFQQSSVNALALSSFF 191 (358)
Q Consensus 133 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~~~~ 191 (358)
...|.|+....+|+.+++| .|| .+|.+...... ..+......+..+|..+++..
T Consensus 178 g~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-- 252 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-- 252 (1311)
T ss_pred CceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--
Confidence 4578899977788877765 555 45554322110 011111124567899999986
Q ss_pred CCcEEEEeecCCcEEEEEccC
Q 038537 192 DNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 192 ~~~~l~~~~~dg~i~i~d~~~ 212 (358)
..+.+.+-+..|.|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 677889999999999999987
No 461
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.29 E-value=11 Score=32.50 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=40.5
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecc--cceEE-EEecCCEEEEEeCCceEEEEecccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARH--GEVRA-ILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKV 67 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~--~~v~~-i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 67 (358)
++++..+|.|.-.|..++..+.....-. ..+.. +...+..++.++.+|.+..+|..+++.......
T Consensus 71 v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~ 139 (370)
T COG1520 71 VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNV 139 (370)
T ss_pred EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEec
Confidence 4566778888888888877543222111 11111 111245688889999888888877777665443
No 462
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.01 E-value=11 Score=31.98 Aligned_cols=60 Identities=23% Similarity=0.200 Sum_probs=40.4
Q ss_pred CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEE
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFK 302 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~ 302 (358)
+.++++.-..+.|....+.......+....+.....++..|++.|+ |.++++-+.+|.|.
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD------G~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD------GALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT------SEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC------CeEEEEECCCCeEe
Confidence 4566666667788888886554333333334455668999999999 88888888888874
No 463
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.59 E-value=14 Score=32.72 Aligned_cols=144 Identities=14% Similarity=0.110 Sum_probs=79.6
Q ss_pred CCCEEE-EEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCC-------EEEEEeCCCcEEEEEceecCCccee
Q 038537 100 AEGLLY-TGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDG-------FVFTCSSDGSVKIWRRVYRENSHTL 171 (358)
Q Consensus 100 ~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~~wd~~~~~~~~~~ 171 (358)
+..+|+ .|+....++-.|++.++ .+.....|..- -+.|.|... .-++|-.+..|.-.|.+...+....
T Consensus 478 dssli~~dg~~~~kLykmDIErGk--vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGK--VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeecccce--eeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee
Confidence 444443 45666678888888887 66666666554 466776421 2344555666666676654422221
Q ss_pred eeeec-ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEeeeCCEEEEeeCCCe
Q 038537 172 TMTLK-FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTT 248 (358)
Q Consensus 172 ~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~ 248 (358)
...-. .......+.... ...++++++..|-|++||--.. .....+++....+ .....+|.++++.+. ..
T Consensus 554 ~esKdY~tKn~Fss~~tT---esGyIa~as~kGDirLyDRig~----rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~y 625 (776)
T COG5167 554 VESKDYKTKNKFSSGMTT---ESGYIAAASRKGDIRLYDRIGK----RAKTALPGLGDAIKHIDVTANGKHILATCK-NY 625 (776)
T ss_pred eeehhccccccccccccc---cCceEEEecCCCceeeehhhcc----hhhhcCcccccceeeeEeecCCcEEEEeec-ce
Confidence 11100 011222333332 5679999999999999995441 1111133333333 455667888777664 45
Q ss_pred EEEEEcC
Q 038537 249 IRVWRRA 255 (358)
Q Consensus 249 i~iwd~~ 255 (358)
+.+-|++
T Consensus 626 llL~d~~ 632 (776)
T COG5167 626 LLLTDVP 632 (776)
T ss_pred EEEEecc
Confidence 6677764
No 464
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.11 E-value=3.9 Score=30.78 Aligned_cols=37 Identities=11% Similarity=-0.133 Sum_probs=29.8
Q ss_pred cceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 272 GPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 272 ~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
..|.+++|||.+-....+-+|++...+|.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4799999999654333367899999999999998764
No 465
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=88.99 E-value=14 Score=31.75 Aligned_cols=244 Identities=11% Similarity=0.045 Sum_probs=100.2
Q ss_pred eCCCceeeeeeeecccceEEEEe-------cCCE-EEEEeCCce--EEEEecccccccccccccccCCCceeeeecCCCc
Q 038537 15 RQPDCVERGFIKARHGEVRAILA-------HDNM-LFTTNKDCK--IRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNT 84 (358)
Q Consensus 15 ~~~~~~~~~~~~~h~~~v~~i~~-------~~~~-l~s~~~dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
|..+|..+..+..+.+....+-| +|+. |+.+..||. +.+.|+.+++..+...
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd------------------ 77 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD------------------ 77 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---------------------
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc------------------
Confidence 55677777777655554444433 5654 444544554 5566777665433211
Q ss_pred cccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEE--cCCCCEEEEEeC---C-----
Q 038537 85 QQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVV--NQDDGFVFTCSS---D----- 154 (358)
Q Consensus 85 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~---d----- 154 (358)
+-........++|+++.++-......|+-.|+++.+...+..+ ....+-...| +.++..++-.-. |
T Consensus 78 --g~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~--p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~ 153 (386)
T PF14583_consen 78 --GPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV--PDDWKGYGTWVANSDCTKLVGIEISREDWKPLT 153 (386)
T ss_dssp --SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----
T ss_pred --CCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC--CcccccccceeeCCCccEEEEEEEeehhccCcc
Confidence 0011122355678888877666667899999998874444443 3444433444 335555433211 1
Q ss_pred --------------CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec---CCc-EEEEEccCCcCC
Q 038537 155 --------------GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS---DGS-INFWEKDKMSGG 216 (358)
Q Consensus 155 --------------g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~-i~i~d~~~~~~~ 216 (358)
..|.-.|+.+++. . .+-.....+..+.++| .+..+|.-|.+ +.. -+||-++.....
T Consensus 154 ~~~~f~e~~~a~p~~~i~~idl~tG~~----~-~v~~~~~wlgH~~fsP-~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~ 227 (386)
T PF14583_consen 154 KWKGFREFYEARPHCRIFTIDLKTGER----K-VVFEDTDWLGHVQFSP-TDPTLIMFCHEGPWDLVDQRIWTINTDGSN 227 (386)
T ss_dssp SHHHHHHHHHC---EEEEEEETTT--E----E-EEEEESS-EEEEEEET-TEEEEEEEEE-S-TTTSS-SEEEEETTS--
T ss_pred ccHHHHHHHhhCCCceEEEEECCCCce----e-EEEecCccccCcccCC-CCCCEEEEeccCCcceeceEEEEEEcCCCc
Confidence 1122233333221 1 1112345667888888 35555555543 221 366766543222
Q ss_pred ccccc-eeecccceeEEEeeeCCEEEE-----eeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCe
Q 038537 217 FNHGG-FLQGHCFAVLCLVAIEKLIFS-----GSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGF 290 (358)
Q Consensus 217 ~~~~~-~~~~~~~~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~ 290 (358)
..... ...+....---+.++|..|.- ++.+..|.-+|..+++. +.+..+. .-..+..+++ +.
T Consensus 228 ~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~--~~~~~~p----~~~H~~ss~D------g~ 295 (386)
T PF14583_consen 228 VKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER--RRLMEMP----WCSHFMSSPD------GK 295 (386)
T ss_dssp -EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E--EEEEEE-----SEEEEEE-TT------SS
T ss_pred ceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc--eEEEeCC----ceeeeEEcCC------CC
Confidence 22211 111111122345567765443 23455677788888753 2222221 2334555666 66
Q ss_pred EEEEccCC
Q 038537 291 LVYSSSLD 298 (358)
Q Consensus 291 ~l~s~~~d 298 (358)
+++-=+.|
T Consensus 296 L~vGDG~d 303 (386)
T PF14583_consen 296 LFVGDGGD 303 (386)
T ss_dssp EEEEEE--
T ss_pred EEEecCCC
Confidence 66544443
No 466
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=88.94 E-value=6.6 Score=34.10 Aligned_cols=164 Identities=11% Similarity=0.030 Sum_probs=95.2
Q ss_pred cCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccccccc----CeE-EEEEcCCCCEEEEEeCCCcEEEE-
Q 038537 87 QHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHES----NVN-AIVVNQDDGFVFTCSSDGSVKIW- 160 (358)
Q Consensus 87 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~l~~~~~dg~i~~w- 160 (358)
.-...|..+-..|+|+.|..-+. ..+.++++.+...+.........+ .|+ .+..-..+.-+++++.||.|.-|
T Consensus 218 ~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 218 VPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence 33456777888999998876655 678899887655322211111111 122 12222346678889999999887
Q ss_pred EceecCC-cceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCE
Q 038537 161 RRVYREN-SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKL 239 (358)
Q Consensus 161 d~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (358)
|.+.+.. .......++....++..+.-. .+.+-+++-+..|++.++.....+. .... ..........++|.+.+
T Consensus 297 dvr~~~~p~l~h~R~f~l~pa~~~~l~pe--~~rkgF~~l~~~G~L~~f~st~~~~--lL~~-~~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 297 DVRRDGQPHLNHIRNFKLAPAEVQFLLPE--TNRKGFYSLYRNGTLQSFYSTSEKL--LLFE-RAYQAPQLVAMSPNQAY 371 (733)
T ss_pred eeecCCCCcceeeeccccCcccceeeccc--cccceEEEEcCCCceeeeecccCcc--eehh-hhhcCcceeeeCcccch
Confidence 5543322 112222223233444444332 3566788888889988876544221 1111 11224566889999998
Q ss_pred EEEeeCCCeEEEEEcCCC
Q 038537 240 IFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 240 l~~~~~dg~i~iwd~~~~ 257 (358)
+++- ..|.++++.+.+.
T Consensus 372 Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 372 LLSE-DQGKIRLAQLENR 388 (733)
T ss_pred heee-cCCceEEEEecCC
Confidence 8876 4567999988765
No 467
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=88.64 E-value=20 Score=33.23 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=80.4
Q ss_pred cccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeec-ccCC-ceeEEEEeecC----CCcEEEEeec-C--
Q 038537 132 HESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLK-FQQS-SVNALALSSFF----DNYFLYSGSS-D-- 202 (358)
Q Consensus 132 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~-~i~~~~~~~~~----~~~~l~~~~~-d-- 202 (358)
-.+.|..+.+.++++.+++...+|.|.+||...+...... ... .+.. -+.. .|.+.. ...++++-+. +
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~--~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~ 204 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVP--QLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNS 204 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccc--ccccccccceehh-hhhcccccccCCceEEEEEEcCCC
Confidence 3678999999999999999999999999998322111111 111 1111 1111 222211 2344444443 3
Q ss_pred -CcEEEEEccCCcCCccccc--eeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeee--eecCcccceEEE
Q 038537 203 -GSINFWEKDKMSGGFNHGG--FLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLA--VLDGHRGPVRCL 277 (358)
Q Consensus 203 -g~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~h~~~v~~i 277 (358)
-..+++.+........... ........-..++.....|+-- .++.|.+|++..-+.....-. .+..-...+.++
T Consensus 205 k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl 283 (670)
T PF10395_consen 205 KLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSL 283 (670)
T ss_pred cEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEe
Confidence 2456777722111111111 1111122223344443333333 677899999977633111100 111111123333
Q ss_pred -EeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 278 -AASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 278 -~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+.++ .+.|++. +..|.+.|+..
T Consensus 284 ~~~s~-------nRvLLs~--~nkIyLld~~~ 306 (670)
T PF10395_consen 284 KPPSP-------NRVLLSV--NNKIYLLDLKF 306 (670)
T ss_pred ecCCC-------CeEEEEc--CCEEEEEeehh
Confidence 2333 4666654 56899999875
No 468
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=88.46 E-value=24 Score=33.83 Aligned_cols=147 Identities=12% Similarity=0.231 Sum_probs=80.6
Q ss_pred eCCCcEEEEeCCCceeeeeeeecccceEEE---EecCC-------EEEEEeCCceEEEEecccccccccccccccCCCce
Q 038537 6 SSSTRIRVWRQPDCVERGFIKARHGEVRAI---LAHDN-------MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 6 ~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i---~~~~~-------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
+.|..+.+||..++..-+.+..-...|..+ .+..+ +++..+....+.++-+.-.+.........
T Consensus 99 T~dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vAT~~e~~ilgvs~d~~T~Els~fn------ 172 (1263)
T COG5308 99 TNDNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVATEKEVMILGVSKDTKTGELSLFN------ 172 (1263)
T ss_pred EcCCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhhhhheeeEEEEEeccccceeEEEe------
Confidence 568899999998766555554433334333 33222 12222223344444433222111111100
Q ss_pred eeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCC--------cc--------------cccccccccc
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDK--------RC--------------TCVDSFVAHE 133 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~--------------~~~~~~~~~~ 133 (358)
..-...-..-.|.|+.-+.+|+.+++|-.| +.+|.+.-. ++ +....+.-|.
T Consensus 173 -----Tgl~vsvqGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipg 245 (1263)
T COG5308 173 -----TGLVVSVQGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPG 245 (1263)
T ss_pred -----cceEEeccCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcc
Confidence 000112223458888888889988888777 677765311 00 0001122356
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEEceec
Q 038537 134 SNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYR 165 (358)
Q Consensus 134 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 165 (358)
..|..++.......+.+-.....|+.|.+...
T Consensus 246 etI~Ql~vDqsRg~ly~Lr~kS~Vray~itkn 277 (1263)
T COG5308 246 ETIKQLAVDQSRGLLYVLRKKSAVRAYSITKN 277 (1263)
T ss_pred cchhheeecccccceeeecccceeeeEeeecc
Confidence 77888888887788888888888998877544
No 469
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.17 E-value=8.2 Score=35.42 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=41.3
Q ss_pred CCCCEEEEEecCCeEEEEEccC----Cc-ccc-----------ccccc--------ccccCeEEEEEcC----CCCEEEE
Q 038537 99 HAEGLLYTGSFDKTVKAWRVLD----KR-CTC-----------VDSFV--------AHESNVNAIVVNQ----DDGFVFT 150 (358)
Q Consensus 99 ~~~~~l~~~~~dg~i~iwd~~~----~~-~~~-----------~~~~~--------~~~~~v~~~~~~~----~~~~l~~ 150 (358)
++...++.+..||.+....... +. +.. +..+. .....+..++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4666788888999888887654 11 000 00000 0123455666666 7789999
Q ss_pred EeCCCcEEEEEceecCC
Q 038537 151 CSSDGSVKIWRRVYREN 167 (358)
Q Consensus 151 ~~~dg~i~~wd~~~~~~ 167 (358)
.+.|+.+|+||+.++..
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999987765
No 470
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.15 E-value=11 Score=29.37 Aligned_cols=112 Identities=14% Similarity=0.178 Sum_probs=63.4
Q ss_pred EEEecC-CEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecC--
Q 038537 34 AILAHD-NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD-- 110 (358)
Q Consensus 34 ~i~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-- 110 (358)
++...+ +.|+.+.....|.+|++.......... -.--+.|..+.++..|++|+|--.+
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~-------------------F~Tv~~V~~l~y~~~GDYlvTlE~k~~ 82 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCT-------------------FSTVGRVLQLVYSEAGDYLVTLEEKNK 82 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEE-------------------EcchhheeEEEeccccceEEEEEeecC
Confidence 344434 666666777889999998433221111 1223668999999999999985332
Q ss_pred -C---eEEEE---EccCCcccccc-ccc---------------------ccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038537 111 -K---TVKAW---RVLDKRCTCVD-SFV---------------------AHESNVNAIVVNQDDGFVFTCSSDGSVKIWR 161 (358)
Q Consensus 111 -g---~i~iw---d~~~~~~~~~~-~~~---------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 161 (358)
. .+|+| +....+..++. .+. .-..++.+++..|-..-|+.|+ ++.+.+|.
T Consensus 83 ~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~ 161 (215)
T PF14761_consen 83 RSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFT 161 (215)
T ss_pred CccceEEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEE
Confidence 2 56665 22110000111 000 1234677888888444455554 56799998
Q ss_pred ceec
Q 038537 162 RVYR 165 (358)
Q Consensus 162 ~~~~ 165 (358)
+...
T Consensus 162 l~~~ 165 (215)
T PF14761_consen 162 LKYQ 165 (215)
T ss_pred EEEE
Confidence 7644
No 471
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.98 E-value=12 Score=29.91 Aligned_cols=138 Identities=10% Similarity=0.131 Sum_probs=73.9
Q ss_pred EEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-C--CcEEEEEceecCCcceeee---eecccCCceeEEE
Q 038537 113 VKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-D--GSVKIWRRVYRENSHTLTM---TLKFQQSSVNALA 186 (358)
Q Consensus 113 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~~wd~~~~~~~~~~~~---~~~~~~~~i~~~~ 186 (358)
-.+||+.+.+...+... ...-+.+-.+.+||+++.+|+. + ..+++++............ .+. ....-.+..
T Consensus 48 s~~yD~~tn~~rpl~v~--td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~ 124 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ--TDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTAT 124 (243)
T ss_pred EEEEecCCCcEEeccCC--CCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccce
Confidence 46788888874443321 2333444467789999998875 2 3578887643110111110 011 122333344
Q ss_pred EeecCCCcEEEEeecCCc-EEEEEccCCcC-Ccc--ccc----eeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 187 LSSFFDNYFLYSGSSDGS-INFWEKDKMSG-GFN--HGG----FLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 187 ~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~-~~~--~~~----~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
..+ ||+.|+.|+.... ..+|.-..... ... ... .....-.+.+.+.|+|++++.+..+. .|||..+.
T Consensus 125 ~L~--DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 125 TLP--DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred ECC--CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCC
Confidence 444 8999999888743 33443321111 011 000 11123345577889999999987654 45688776
No 472
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=87.89 E-value=2 Score=20.74 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.2
Q ss_pred cceEEEEecCCEEEEEeCCceEEEEe
Q 038537 30 GEVRAILAHDNMLFTTNKDCKIRIWN 55 (358)
Q Consensus 30 ~~v~~i~~~~~~l~s~~~dg~i~iw~ 55 (358)
..|.+++..+++++.+...+.+|+|.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 35788888899999999999999974
No 473
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.61 E-value=3.8 Score=37.58 Aligned_cols=85 Identities=15% Similarity=0.261 Sum_probs=42.3
Q ss_pred cCCEEEEEeCCceEEEEeccccc---ccccccccccC----CCceeeeecCCCccccCCCceEEEEEeC----CCCEEEE
Q 038537 38 HDNMLFTTNKDCKIRIWNFTVSD---NFRTKKVTTLP----RRSSFLSFSKSNTQQQHRDCVSCMAFYH----AEGLLYT 106 (358)
Q Consensus 38 ~~~~l~s~~~dg~i~iw~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~ 106 (358)
++..++.+..||.+......... ........... .....+... ..........+..++.++ +..+|++
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWS-YRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT----SSSS---EEEEEE-----ETTTEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcc-cccCCCCCCccceEEEecceeCCCCEEEE
Confidence 67788888899998888776521 11100000000 000000000 000011223345555555 6779999
Q ss_pred EecCCeEEEEEccCCcc
Q 038537 107 GSFDKTVKAWRVLDKRC 123 (358)
Q Consensus 107 ~~~dg~i~iwd~~~~~~ 123 (358)
.+.|+++|+||+.++++
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999999883
No 474
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=87.55 E-value=20 Score=31.84 Aligned_cols=56 Identities=9% Similarity=-0.004 Sum_probs=37.3
Q ss_pred CceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccc-----ccccCeEEEEEcCCC
Q 038537 90 DCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFV-----AHESNVNAIVVNQDD 145 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~ 145 (358)
...+.|+|.|++++|++--..|.|++++..++....+..+. ........|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 44788999999987776544699999986554321222111 125678999999874
No 475
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=87.34 E-value=18 Score=31.20 Aligned_cols=195 Identities=15% Similarity=0.077 Sum_probs=93.7
Q ss_pred cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEE
Q 038537 38 HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWR 117 (358)
Q Consensus 38 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 117 (358)
.+..++++..+|.|.-.|.+++..++...... ....+.+-.+..+|+ ++.++.++.+..+|
T Consensus 67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~------------------~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld 127 (370)
T COG1520 67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLG------------------AVAQLSGPILGSDGK-IYVGSWDGKLYALD 127 (370)
T ss_pred eCCeEEEecCCCcEEEEeCCCCcEEecccCcC------------------cceeccCceEEeCCe-EEEecccceEEEEE
Confidence 45566777889988888888887654433221 001111112222554 78888999888999
Q ss_pred ccCCccccccccccccc-CeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEE
Q 038537 118 VLDKRCTCVDSFVAHES-NVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFL 196 (358)
Q Consensus 118 ~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 196 (358)
.++++ .+-....... .+..-..-.+ ..+..++.++.+...|..++...+....... ....+..-... ....+
T Consensus 128 ~~~G~--~~W~~~~~~~~~~~~~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~~~~~~~~---~~~~v 200 (370)
T COG1520 128 ASTGT--LVWSRNVGGSPYYASPPVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLSIYGSPAI---ASGTV 200 (370)
T ss_pred CCCCc--EEEEEecCCCeEEecCcEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCc-cccccccCcee---ecceE
Confidence 87777 3333322220 1111111112 2334444677777777766655444322110 01111100001 23344
Q ss_pred EEeec--CCcEEEEEccCCcCCcccccee-ecccc----ee---EEEeeeCCEEEEeeCCCeEEEEEcCCCce
Q 038537 197 YSGSS--DGSINFWEKDKMSGGFNHGGFL-QGHCF----AV---LCLVAIEKLIFSGSEDTTIRVWRRAEGGC 259 (358)
Q Consensus 197 ~~~~~--dg~i~i~d~~~~~~~~~~~~~~-~~~~~----~~---~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 259 (358)
+.+.. ++.+.-.|...+.......... .+... .. -.+. .+.-++.++.++.+...|..+++.
T Consensus 201 y~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~-v~~~~~~~~~~g~~~~l~~~~G~~ 272 (370)
T COG1520 201 YVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVY-VDGGVYAGSYGGKLLCLDADTGEL 272 (370)
T ss_pred EEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEE-ECCcEEEEecCCeEEEEEcCCCce
Confidence 44444 5556666665543332211000 01000 00 0111 123446677788888899998854
No 476
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=87.19 E-value=8.9 Score=31.49 Aligned_cols=97 Identities=8% Similarity=0.086 Sum_probs=57.2
Q ss_pred CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEe------CCCcEEEEEceecCCcceeeee-e-cccCCce
Q 038537 111 KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCS------SDGSVKIWRRVYRENSHTLTMT-L-KFQQSSV 182 (358)
Q Consensus 111 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~~wd~~~~~~~~~~~~~-~-~~~~~~i 182 (358)
..|++||..+.++..... .-.+.|+.+.|..+.++++.|. ....+..||+.... +..... . ..-.+++
T Consensus 16 ~~lC~yd~~~~qW~~~g~--~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ipgpv 91 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN--GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIPGPV 91 (281)
T ss_pred CEEEEEECCCCEeecCCC--CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCCCcE
Confidence 469999999888654433 3567899999986666666664 34567888875432 111111 0 1224677
Q ss_pred eEEEEeecCCCcEEEEee-cCC--cEEEEEcc
Q 038537 183 NALALSSFFDNYFLYSGS-SDG--SINFWEKD 211 (358)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~-~dg--~i~i~d~~ 211 (358)
..+.+......+..+.|. .+| .|..||=.
T Consensus 92 ~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 92 TALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EEEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 777775432334454444 333 45666543
No 477
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.11 E-value=13 Score=29.30 Aligned_cols=139 Identities=9% Similarity=0.089 Sum_probs=73.5
Q ss_pred CCceEEEEEeCCCCEEEEEecC----------CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEE-eCCCcE
Q 038537 89 RDCVSCMAFYHAEGLLYTGSFD----------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC-SSDGSV 157 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i 157 (358)
..+.+.-..+|+|++ +.|... |.++.|-... + +..+...-.--+.++|+.+.+.+..- +.+-.|
T Consensus 108 knR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h-~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGH-Q---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCce-eeeeeccccccccccccEEEEeccCC-C---ceeeehhccCCccccccccCcEEEEEccCceEE
Confidence 444566677899987 334321 3444443321 1 11111112233567888776655543 445667
Q ss_pred EEEE--ceecCCcce-eeeee----cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee
Q 038537 158 KIWR--RVYRENSHT-LTMTL----KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV 230 (358)
Q Consensus 158 ~~wd--~~~~~~~~~-~~~~~----~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 230 (358)
.-|| ..++..... ....+ .........+++.. +|++.++.-..++|...|..+++.... +.-....+
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~--eG~L~Va~~ng~~V~~~dp~tGK~L~e----iklPt~qi 256 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT--EGNLYVATFNGGTVQKVDPTTGKILLE----IKLPTPQI 256 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc--CCcEEEEEecCcEEEEECCCCCcEEEE----EEcCCCce
Confidence 6676 444432211 11111 11222334455554 788899988899999999988543322 33334556
Q ss_pred EEEeeeCC
Q 038537 231 LCLVAIEK 238 (358)
Q Consensus 231 ~~~~~~~~ 238 (358)
+++++-|+
T Consensus 257 tsccFgGk 264 (310)
T KOG4499|consen 257 TSCCFGGK 264 (310)
T ss_pred EEEEecCC
Confidence 66666553
No 478
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.80 E-value=18 Score=30.60 Aligned_cols=166 Identities=18% Similarity=0.233 Sum_probs=88.7
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCc------EEEEEceecCC-cc--eee--eeeccc--------CCceeEEEEeecCCCc
Q 038537 134 SNVNAIVVNQDDGFVFTCSSDGS------VKIWRRVYREN-SH--TLT--MTLKFQ--------QSSVNALALSSFFDNY 194 (358)
Q Consensus 134 ~~v~~~~~~~~~~~l~~~~~dg~------i~~wd~~~~~~-~~--~~~--~~~~~~--------~~~i~~~~~~~~~~~~ 194 (358)
+.+..|.+.+++..+++.+.+|. +..+++..... .. ... ..+... .....++++.+ ++.
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~--~g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP--DGS 97 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec--CCC
Confidence 55778888876666777777777 66666544111 00 100 011111 11445778844 777
Q ss_pred EEEEeecC------CcEEEEEccCCcCCcc--cccee-----------ecccceeEEEeeeCCEEEEeeCC-----C--e
Q 038537 195 FLYSGSSD------GSINFWEKDKMSGGFN--HGGFL-----------QGHCFAVLCLVAIEKLIFSGSED-----T--T 248 (358)
Q Consensus 195 ~l~~~~~d------g~i~i~d~~~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~d-----g--~ 248 (358)
++++.-.+ ..|..++... ..... ....+ ......-+++.++++.|+++.+. + .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G-~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDG-RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCC-cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 77777667 7788888652 11111 11111 11122347778888866655422 2 1
Q ss_pred -------EEEE--EcCC-CceeeeeeeeecC-----cccceEEEEeecccceeeeCeEEEEc-----cCCCcEEEEEeee
Q 038537 249 -------IRVW--RRAE-GGCYHECLAVLDG-----HRGPVRCLAASLEMEKVVMGFLVYSS-----SLDQTFKVWRVKV 308 (358)
Q Consensus 249 -------i~iw--d~~~-~~~~~~~~~~~~~-----h~~~v~~i~~~~~~~~~~~~~~l~s~-----~~dg~v~iw~~~~ 308 (358)
++++ |..+ +....+....+.. ....|+.+.+-++ +++|+-= +....++|+.+..
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d------~~lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPD------GRLLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECC------CcEEEEEccCCCCccceEEEEEEEc
Confidence 4454 5444 2222344444443 4568899999998 5555422 1345677776664
No 479
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.74 E-value=22 Score=31.55 Aligned_cols=113 Identities=18% Similarity=0.120 Sum_probs=61.2
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcce--eeeee-cccCCceeEEEEeecC----CCcEEEEee------
Q 038537 134 SNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHT--LTMTL-KFQQSSVNALALSSFF----DNYFLYSGS------ 200 (358)
Q Consensus 134 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~--~~~~~-~~~~~~i~~~~~~~~~----~~~~l~~~~------ 200 (358)
...+.|+|.|++++|++--..|.|++++......... +.... .........|+++|.. ...+|....
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~ 109 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD 109 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence 4568899999998777654469999987543321111 11111 1136778999999854 223444432
Q ss_pred ----cCCcEEEEEccCCcC----Cccccc---eeecccceeEEEeeeCCEEEEeeCC
Q 038537 201 ----SDGSINFWEKDKMSG----GFNHGG---FLQGHCFAVLCLVAIEKLIFSGSED 246 (358)
Q Consensus 201 ----~dg~i~i~d~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d 246 (358)
....|.-|.+..... ...+.. ....|...-+.+.+++.+.++.+..
T Consensus 110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 123444455432110 011111 1124667777888998876655443
No 480
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=86.47 E-value=3.4 Score=22.02 Aligned_cols=24 Identities=4% Similarity=0.059 Sum_probs=18.3
Q ss_pred EEEecCCEEEEEeCCceEEEEecc
Q 038537 34 AILAHDNMLFTTNKDCKIRIWNFT 57 (358)
Q Consensus 34 ~i~~~~~~l~s~~~dg~i~iw~~~ 57 (358)
.....++.++.++.||.+..+|.+
T Consensus 16 ~~~v~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVAGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp --EECTSEEEEE-TTSEEEEEETT
T ss_pred CCEEECCEEEEEcCCCEEEEEeCC
Confidence 346678899999999999999875
No 481
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.28 E-value=30 Score=32.69 Aligned_cols=31 Identities=3% Similarity=0.013 Sum_probs=24.3
Q ss_pred CCCceEEEEEeCCCCEEEEEecCCeEEEEEc
Q 038537 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRV 118 (358)
Q Consensus 88 h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 118 (358)
-.+.|-..+||.|.+.++....+..|.+++-
T Consensus 111 v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 111 VSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred ccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 4567888999999987777777778888763
No 482
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.57 E-value=21 Score=35.37 Aligned_cols=230 Identities=15% Similarity=0.081 Sum_probs=0.0
Q ss_pred cCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecC
Q 038537 87 QHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRE 166 (358)
Q Consensus 87 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 166 (358)
+-......++|+|...+++.++.+|.|+++-...-+.......... -.+..+.+-...........+..+.+|..
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~-~~~~~~~~~~~~s~~~~l~~~~~~~~~~~---- 107 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQ-INVTRIELLVGISRNLVLSDDDSLHLWSI---- 107 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccc-hhhhheeeeecccccceeecccceeeecc----
Q ss_pred CcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCC---------------------------------
Q 038537 167 NSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKM--------------------------------- 213 (358)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--------------------------------- 213 (358)
....... ....+++....+ --.+ ..+ ..+.+++||....
T Consensus 108 ~~~~~~~----~~~~~~~~~~~~--~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 179 (993)
T KOG1983|consen 108 KIKTGVF----LKQEITSFVTDP--PPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVID 179 (993)
T ss_pred cccceee----cCCcceeccCCC--Ccch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccc
Q ss_pred ------cCCccccceeecccceeEEEee-eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeeccccee
Q 038537 214 ------SGGFNHGGFLQGHCFAVLCLVA-IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKV 286 (358)
Q Consensus 214 ------~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 286 (358)
...... ..+.-+...+.+..+ ...-++.+..-+.+-+|+.... .....+....... +++
T Consensus 180 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----~~~---- 245 (993)
T KOG1983|consen 180 LDTVLISLPDAY-LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASK----YVQSAYLPNGQLE-----SRD---- 245 (993)
T ss_pred cccceeeccccc-ccccccccccceeeeecCCCcceeeeeeeeeehhcccc----cchhhcccccccC-----ccC----
Q ss_pred eeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCCcc--ceeeecccCCCccccccc
Q 038537 287 VMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNSK--TTTTKMDYEMSPVLSPSW 346 (358)
Q Consensus 287 ~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~s~~W 346 (358)
+..++++..||.+.+||+..... ........+..+.... ......-........+.|
T Consensus 246 --~~~~v~~h~Dgs~~fWd~s~g~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~~ 304 (993)
T KOG1983|consen 246 --GSHFVSYHTDGSYAFWDVSSGKL-QIARNPVPLVSLVPYGPCKQINRILTELPRSGKPFW 304 (993)
T ss_pred --CceEEEEEecCCEEeeecCCCce-eecCccccccccCCCChhhhhcccccccccccCcEE
No 483
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=85.22 E-value=29 Score=31.43 Aligned_cols=135 Identities=10% Similarity=0.104 Sum_probs=67.4
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecc-cceEEEEec-CCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARH-GEVRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~-~~v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
+..|+.|| +..+|..+++..+.-.... .+|.++..+ ...+..|+.+| +.+.+....+......
T Consensus 178 lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~~sn~~~------------- 242 (671)
T COG3292 178 LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWRASNWGP------------- 242 (671)
T ss_pred EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEeccc-eEEEchhhccccccCC-------------
Confidence 45677777 6667777777665544433 556666554 55777787776 5666655421110000
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccc-ccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCT-CVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
.--...|..+.-..+| .+-.|+..|..+. ........ +.......-+.|.++..+.+|+ +-+++.+|.++
T Consensus 243 ------~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~ 313 (671)
T COG3292 243 ------MLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVR 313 (671)
T ss_pred ------CCcchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEE
Confidence 0112224444333333 4666777664433 22222211 1111111234567777776776 44556666655
Q ss_pred EE
Q 038537 159 IW 160 (358)
Q Consensus 159 ~w 160 (358)
+-
T Consensus 314 ~~ 315 (671)
T COG3292 314 YL 315 (671)
T ss_pred Ee
Confidence 54
No 484
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=84.86 E-value=27 Score=30.84 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=24.3
Q ss_pred ceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 273 PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 273 ~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.|.+++..+. .+.|++...+|.|.+|++..
T Consensus 191 ~I~~v~~d~~------r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPS------RRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETT------TTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCC------cCEEEEEeCCCcEEEEEEeC
Confidence 4888888888 67999999999999999985
No 485
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=84.52 E-value=43 Score=32.85 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=47.0
Q ss_pred CCceEEEEEeCCC------CEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC---CC------CEEEEEeC
Q 038537 89 RDCVSCMAFYHAE------GLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ---DD------GFVFTCSS 153 (358)
Q Consensus 89 ~~~v~~~~~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~---~~------~~l~~~~~ 153 (358)
...|.|+++.+++ ++++.++.|+.+++..+...........++-..++.++.+-+ ++ -++.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 4568888887754 579999999999999988655323334445556666665543 22 25667767
Q ss_pred CCcEEEE
Q 038537 154 DGSVKIW 160 (358)
Q Consensus 154 dg~i~~w 160 (358)
+|.+.-+
T Consensus 662 NGvllR~ 668 (1205)
T KOG1898|consen 662 NGVLLRF 668 (1205)
T ss_pred ccEEEEE
Confidence 7755433
No 486
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.21 E-value=17 Score=28.10 Aligned_cols=179 Identities=9% Similarity=0.018 Sum_probs=82.9
Q ss_pred CCCEEEEEecC--CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEE-EEEeCCCcEEEEEceecCCcceeeeeec
Q 038537 100 AEGLLYTGSFD--KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFV-FTCSSDGSVKIWRRVYRENSHTLTMTLK 176 (358)
Q Consensus 100 ~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 176 (358)
++.++.+.+.- ..|++||+.+++......+.. ..+..=-...-++.+ ...-.+|.-..+|..+-+....+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~--~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y--- 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP--DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY--- 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCC--ccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc---
Confidence 45555555443 479999999887322222221 111110001112222 2234577788888866554443332
Q ss_pred ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeE---EEee-eCCEEEEeeCCCeEEEE
Q 038537 177 FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL---CLVA-IEKLIFSGSEDTTIRVW 252 (358)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~l~~~~~dg~i~iw 252 (358)
++.-+.++. ++..|+.++...+++.-|.++........-...+ .+|. .+.+ +|.+.|-.-.+..|...
T Consensus 130 --~GeGWgLt~----d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g--~pv~~LNELE~VdG~lyANVw~t~~I~rI 201 (262)
T COG3823 130 --EGEGWGLTS----DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDG--VPVSKLNELEWVDGELYANVWQTTRIARI 201 (262)
T ss_pred --CCcceeeec----CCcceEeeCCceEEEecCHHHhhhcceEEEEECC--eecccccceeeeccEEEEeeeeecceEEE
Confidence 344455554 4555666666667777666552221111111111 1221 1111 23322222222233333
Q ss_pred EcCCCcee--------eeeeeeecCcccceEEEEeecccceeeeCeEEEEcc
Q 038537 253 RRAEGGCY--------HECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSS 296 (358)
Q Consensus 253 d~~~~~~~--------~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~ 296 (358)
+..+++.. ...+..-..|..-.+.|++.|+. +++++||-
T Consensus 202 ~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~-----~r~~iTGK 248 (262)
T COG3823 202 DPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQ-----DRFLITGK 248 (262)
T ss_pred cCCCCcEEEEEEccCCchhcCccccccccccceeecCcC-----CeEEEecC
Confidence 33333210 01222233456678899999984 36777764
No 487
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=83.83 E-value=34 Score=31.12 Aligned_cols=254 Identities=6% Similarity=-0.041 Sum_probs=0.0
Q ss_pred EEeeeCCCcEEEEeCCCce--eeeeeeec-ccceEEEEe-cCC--EEEEEeCCceEEEEecccccccccccccccCCCce
Q 038537 2 VFTGSSSTRIRVWRQPDCV--ERGFIKAR-HGEVRAILA-HDN--MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~--~~~~~~~h-~~~v~~i~~-~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
++-+..+|.+....+.... .....-+. .....++.. +++ +|+.|+.-|.=.++.+..........
T Consensus 225 ~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~--------- 295 (504)
T PF10433_consen 225 ILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDS--------- 295 (504)
T ss_dssp EEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEE---------
T ss_pred EEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEe---------
Q ss_pred eeeecCCCccccCCCceEEEEEe----CCCC------EEEEEe---cCCeEEEEEccCCcc--cccccccccccCeEEEE
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFY----HAEG------LLYTGS---FDKTVKAWRVLDKRC--TCVDSFVAHESNVNAIV 140 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~----~~~~------~l~~~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~ 140 (358)
...-++|..+++. .... .|++++ .+|.+++..-.-+-. .....-...-..++.+.
T Consensus 296 ----------~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~ 365 (504)
T PF10433_consen 296 ----------LPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLK 365 (504)
T ss_dssp ----------E----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-
T ss_pred ----------ccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEee
Q ss_pred EcCCCCEEEEEeCCCcEEEEEc---eecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCc
Q 038537 141 VNQDDGFVFTCSSDGSVKIWRR---VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGF 217 (358)
Q Consensus 141 ~~~~~~~l~~~~~dg~i~~wd~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 217 (358)
........+..+....-+++.+ ...+...+. ... +-......+...... +..++=....+ |++.+........
T Consensus 366 ~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~-~~~-~f~~~~~Tl~~~~~~-~~~ivQVt~~~-i~l~~~~~~~~~~ 441 (504)
T PF10433_consen 366 LSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEV-EED-GFDTDEPTLAAGNVG-DGRIVQVTPKG-IRLIDLEDGKLTQ 441 (504)
T ss_dssp SSSSSBSEEEEEESSEEEEEEES----SSEEEEE-----TS-SSS-EEEEEEET-TTEEEEEESSE-EEEEESSSTSEEE
T ss_pred ecCCCceEEEEEcCCceEEEEEecccCCcchhhh-hhc-cCCCCCCCeEEEEcC-CCeEEEEecCe-EEEEECCCCeEEE
Q ss_pred cccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeee-eeecCcccceEEEEeec
Q 038537 218 NHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECL-AVLDGHRGPVRCLAASL 281 (358)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~h~~~v~~i~~~~ 281 (358)
.. .......+.+.+.++.+++.+-.++.+..+.+.......... .........|.|+...|
T Consensus 442 ~w---~~~~~~~I~~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 442 EW---KPPAGSIIVAASINDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EE---E-TTS---SEEEESSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EE---eCCCCCeEEEEEECCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
No 488
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=83.77 E-value=4.7 Score=21.21 Aligned_cols=23 Identities=13% Similarity=0.263 Sum_probs=18.6
Q ss_pred EEEEeeCCCeEEEEEcCCCceee
Q 038537 239 LIFSGSEDTTIRVWRRAEGGCYH 261 (358)
Q Consensus 239 ~l~~~~~dg~i~iwd~~~~~~~~ 261 (358)
.++.++.+|.|+-.|..+++..+
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W 24 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLW 24 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEE
Confidence 45666999999999999996544
No 489
>PRK13684 Ycf48-like protein; Provisional
Probab=83.71 E-value=26 Score=29.77 Aligned_cols=156 Identities=11% Similarity=0.066 Sum_probs=76.9
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 133 ESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 133 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
...+.++.+.|++.+++++ ..|.+..- ...+...... ........+..+.+.+ ++..++++ ..|.+.+=....
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~--~~~~~~~~l~~i~~~~--~g~~~~vg-~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWTP--HQRNSSRRLQSMGFQP--DGNLWMLA-RGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEEE--eeCCCcccceeeeEcC--CCCEEEEe-cCCEEEEccCCC
Confidence 4568899999987666554 45654431 1112122222 2223456788888887 67766655 567664322222
Q ss_pred CcCCcccccee-ecccceeE--EEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeC
Q 038537 213 MSGGFNHGGFL-QGHCFAVL--CLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMG 289 (358)
Q Consensus 213 ~~~~~~~~~~~-~~~~~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~ 289 (358)
+ ......... ......+. .+.+++.. +.++.+|.+. .....++. ++.+.....-....+.+.|..+ +
T Consensus 245 G-~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~------~ 314 (334)
T PRK13684 245 L-ESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKT-WEKDPVGEEVPSNFYKIVFLDP------E 314 (334)
T ss_pred C-CccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCC-CeECCcCCCCCcceEEEEEeCC------C
Confidence 1 111211111 00112233 33444454 4555677665 34443321 2222111122345777887766 4
Q ss_pred eEEEEccCCCcEEEEEe
Q 038537 290 FLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 290 ~~l~s~~~dg~v~iw~~ 306 (358)
..++ .+..|.|..|+-
T Consensus 315 ~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 315 KGFV-LGQRGVLLRYVG 330 (334)
T ss_pred ceEE-ECCCceEEEecC
Confidence 4544 556788887764
No 490
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.77 E-value=25 Score=28.92 Aligned_cols=118 Identities=10% Similarity=0.108 Sum_probs=67.1
Q ss_pred CceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe------cCCeEEEEEccCC
Q 038537 48 DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS------FDKTVKAWRVLDK 121 (358)
Q Consensus 48 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~ 121 (358)
-..|++||..+.+-.... .+-.+.|+.+.|..+.++++.|. ....+..||..+.
T Consensus 15 C~~lC~yd~~~~qW~~~g--------------------~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPG--------------------NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CCEEEEEECCCCEeecCC--------------------CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 456999998765432110 23456799999986666777664 3567889999888
Q ss_pred ccccccc-c-cccccCeEEEEEcC-CCC-EEEEEe-CCC--cEEEEEceecCCcceeeee-ecccCCceeEEEEee
Q 038537 122 RCTCVDS-F-VAHESNVNAIVVNQ-DDG-FVFTCS-SDG--SVKIWRRVYRENSHTLTMT-LKFQQSSVNALALSS 189 (358)
Q Consensus 122 ~~~~~~~-~-~~~~~~v~~~~~~~-~~~-~l~~~~-~dg--~i~~wd~~~~~~~~~~~~~-~~~~~~~i~~~~~~~ 189 (358)
.+..... . ..-.++|..+.+.. +.. ..++|. .+| .|..||= ..+..... .......|..+.+.|
T Consensus 75 ~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG----s~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 75 TWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG----SSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred eeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcC----CceEeccccccCCCCEEEEEEEEe
Confidence 7543333 1 12357888887753 333 444443 233 4555653 22222111 122245666666665
No 491
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=81.37 E-value=4.3 Score=20.24 Aligned_cols=25 Identities=8% Similarity=0.193 Sum_probs=18.8
Q ss_pred CCEEEEEeCCceEEEEecccccccc
Q 038537 39 DNMLFTTNKDCKIRIWNFTVSDNFR 63 (358)
Q Consensus 39 ~~~l~s~~~dg~i~iw~~~~~~~~~ 63 (358)
++.++.++.+|.+..+|..+++...
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEE
Confidence 4467778888899988888776543
No 492
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.89 E-value=6.6 Score=20.88 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=17.4
Q ss_pred CCCCEEEEEe-cCCeEEEEEccCCc
Q 038537 99 HAEGLLYTGS-FDKTVKAWRVLDKR 122 (358)
Q Consensus 99 ~~~~~l~~~~-~dg~i~iwd~~~~~ 122 (358)
|+++.|+++. .++.|.++|..+.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~ 25 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK 25 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe
Confidence 4666666554 57899999987766
No 493
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=78.63 E-value=16 Score=23.95 Aligned_cols=42 Identities=14% Similarity=0.205 Sum_probs=26.8
Q ss_pred EecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEE
Q 038537 107 GSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC 151 (358)
Q Consensus 107 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 151 (358)
+..+|.+..||..+++. ..+...-.-.+.+++++|+..++.+
T Consensus 33 ~~~~GRll~ydp~t~~~---~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKET---TVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEE---EEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeE---EEehhCCCccCeEEEcCCCCEEEEE
Confidence 34568899999988872 2222223457889999999977765
No 494
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=78.52 E-value=40 Score=28.55 Aligned_cols=62 Identities=10% Similarity=0.129 Sum_probs=40.9
Q ss_pred ceEEEEEeCCCCEEEEEecC------CeEEEEEccCCcccc-c---ccc---------cccccCeEEEEEcCCCCEEEEE
Q 038537 91 CVSCMAFYHAEGLLYTGSFD------KTVKAWRVLDKRCTC-V---DSF---------VAHESNVNAIVVNQDDGFVFTC 151 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~-~---~~~---------~~~~~~v~~~~~~~~~~~l~~~ 151 (358)
..-+|++.+++.++++.-.+ ..|..++.. ++... + ..+ ...+...-+|+++|+++.|+++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 44577887788888777666 778888865 43211 1 111 1235678899999999977776
Q ss_pred eC
Q 038537 152 SS 153 (358)
Q Consensus 152 ~~ 153 (358)
.+
T Consensus 165 ~E 166 (326)
T PF13449_consen 165 ME 166 (326)
T ss_pred EC
Confidence 55
No 495
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=78.35 E-value=44 Score=28.90 Aligned_cols=206 Identities=18% Similarity=0.178 Sum_probs=0.0
Q ss_pred eCCCCEEEEEecCCeEEEEEccCCcccccccccccc-cCeEEEEEcCCCCEEEEEeCC----CcEEEEEceecCCcceee
Q 038537 98 YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHE-SNVNAIVVNQDDGFVFTCSSD----GSVKIWRRVYRENSHTLT 172 (358)
Q Consensus 98 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~ 172 (358)
.|...+++....++-+.+||+.......+..-...+ .-...+.+.-...-|++++.. ..|++|.+..........
T Consensus 65 dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 65 DPAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp -GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred CcccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Q ss_pred e----eecccCCceeEEEE--eecCCCcEEEEeecCCcEEEEEccCCcCCc---cccceeecccceeEEEeee-CCEEEE
Q 038537 173 M----TLKFQQSSVNALAL--SSFFDNYFLYSGSSDGSINFWEKDKMSGGF---NHGGFLQGHCFAVLCLVAI-EKLIFS 242 (358)
Q Consensus 173 ~----~~~~~~~~i~~~~~--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~l~~ 242 (358)
. .+......+..+++ ++....-+.+....+|.+..|.+....... ...+.+......--|..-+ ...|+.
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYv 224 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYV 224 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEE
Q ss_pred eeCCCeEEEEEcC-CCceeeeeeeeecC--cccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 243 GSEDTTIRVWRRA-EGGCYHECLAVLDG--HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 243 ~~~dg~i~iwd~~-~~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
+-++--|.-|+.. ......+.+....+ ....|-.|++....... |.+|+|.-.+++..||+
T Consensus 225 gEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~--gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 225 GEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGK--GYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC---EEEEEEEGGGTEEEEEE
T ss_pred ecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCC--eEEEEEcCCCCeEEEEe
No 496
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=77.86 E-value=14 Score=34.78 Aligned_cols=154 Identities=15% Similarity=0.047 Sum_probs=82.9
Q ss_pred CEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCc-CCccccceee
Q 038537 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMS-GGFNHGGFLQ 224 (358)
Q Consensus 146 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~ 224 (358)
..+..|++++.+.++.-..+................+.++.+++ ..+..|.-||++..|--.-.. ........+.
T Consensus 548 PTic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss----~Slgagl~dgt~a~y~rap~gSwd~ep~~~~~ 623 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSS----GSLGAGLIDGTLAVYGRAPSGSWDGEPNISIP 623 (925)
T ss_pred CcccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccc----cccccCccCCccccccCCCCCCCCCCCccccc
Confidence 35788899999999976522222222222233445666666654 335556667776665322100 0000001111
Q ss_pred cccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEE
Q 038537 225 GHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304 (358)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw 304 (358)
....++........ ++.++.+|.|.++...+....++ ......|...|+.+....+ +-+++-++.| .++.+
T Consensus 624 ~g~lPvrsla~~ed-~~was~gG~V~vi~~tt~~~~~~-leahqee~~~Vthm~~~~~------gVwvafasG~-~~rlf 694 (925)
T KOG3522|consen 624 TGSLPVRSLAFQED-FVWASEGGCVHVIPSTTFIRSWD-LEAHQEEAHSVTHMLYLDN------GVWVAFASGD-EERLF 694 (925)
T ss_pred cCCccccchhhhhc-eeeeecCCceEEEechhccccch-hHHHHhhcceEEEEEeeCC------ceEEEEcCCC-EEEEe
Confidence 12233344444444 45556899999999887532222 2233356678999998877 6566666555 56665
Q ss_pred EeeeCCCC
Q 038537 305 RVKVMPDQ 312 (358)
Q Consensus 305 ~~~~~~~~ 312 (358)
+-++....
T Consensus 695 htetl~hl 702 (925)
T KOG3522|consen 695 HTETLWHL 702 (925)
T ss_pred cccccCCc
Confidence 65554433
No 497
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=77.74 E-value=81 Score=31.65 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=87.2
Q ss_pred CEEEEEeC---------CCcEEEEEcee-----cCC--cceeeee-ecccCCceeEEEEeecCCCcEEEEeecCCcEEEE
Q 038537 146 GFVFTCSS---------DGSVKIWRRVY-----REN--SHTLTMT-LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFW 208 (358)
Q Consensus 146 ~~l~~~~~---------dg~i~~wd~~~-----~~~--~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~ 208 (358)
.+|++|.. .|.++++|+-. ++. ..++... .+...++|..++=. +|. |+++ ...+|.+|
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV---~G~-l~~~-~GqKI~v~ 1121 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV---RGH-LLSS-QGQKIIVR 1121 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe---ccE-EEEc-cCcEEEEE
Confidence 47777754 58999999754 111 1111111 23345677776654 454 4443 44689999
Q ss_pred EccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecC--cccceEEEEeeccccee
Q 038537 209 EKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDG--HRGPVRCLAASLEMEKV 286 (358)
Q Consensus 209 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~ 286 (358)
++...... .... +-.-...+..+..-.++|+.|.--..|.+.-...... .+..+.. ..-.+.++.|--++.
T Consensus 1122 ~l~r~~~l-igVa-FiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~---rlsL~srd~~~l~v~s~EFLVdg~-- 1194 (1366)
T KOG1896|consen 1122 KLDRDSEL-IGVA-FIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPY---RLSLLSRDFEPLNVYSTEFLVDGS-- 1194 (1366)
T ss_pred EeccCCcc-eeeE-EeccceeEEehhhhhhheehhhhhhceEEEEEccCce---EEEEeecCCchhhceeeeeEEcCC--
Confidence 99542211 1111 2223334445555578899998777788877665421 1222211 223678888888865
Q ss_pred eeCeEEEEccCCCcEEEEEee
Q 038537 287 VMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 287 ~~~~~l~s~~~dg~v~iw~~~ 307 (358)
.-.++++..|+.|+++-..
T Consensus 1195 --~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1195 --NLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred --eeEEEEEcCCCcEEEEEeC
Confidence 5678999999999997665
No 498
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=77.09 E-value=15 Score=34.51 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=63.0
Q ss_pred eeeeecCCCccccCCCceEE----EEEeCCCCEEEEEecCC-----eEEEEEccCCcccccccccccccCeEEEEEcCCC
Q 038537 75 SFLSFSKSNTQQQHRDCVSC----MAFYHAEGLLYTGSFDK-----TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD 145 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~----~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (358)
.+..++....+..-..+++. ++|-|.|..+++-..|| .|..+.-+..+......-.+....+..++|+-..
T Consensus 228 a~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s 307 (1243)
T COG5290 228 AFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLS 307 (1243)
T ss_pred ceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHH
Confidence 33444444445555555544 78999999999876554 3555553332211111112334556677777655
Q ss_pred CEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEe
Q 038537 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSG 199 (358)
Q Consensus 146 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~ 199 (358)
..++. ...+.+.+|-... --+-+. ....-..+.-+.|+|..+..+++++
T Consensus 308 ~vlav-~~~n~~~lwttkN--yhWYLK--~e~~ip~~s~vkwhpe~~nTl~f~d 356 (1243)
T COG5290 308 TVLAV-AEGNLLKLWTTKN--YHWYLK--VERQIPGISYVKWHPEEKNTLLFRD 356 (1243)
T ss_pred HHHHH-hhcceEEEEEccc--eEEEEE--EeecCCCcceeeeccccCcEEEEec
Confidence 54444 3456788986421 111121 1222345666778875444444444
No 499
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=76.95 E-value=43 Score=28.03 Aligned_cols=233 Identities=11% Similarity=-0.015 Sum_probs=0.0
Q ss_pred CEEEEEeCCceEEEEeccc--ccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEE-EecCCeEEEE
Q 038537 40 NMLFTTNKDCKIRIWNFTV--SDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYT-GSFDKTVKAW 116 (358)
Q Consensus 40 ~~l~s~~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~~~dg~i~iw 116 (358)
++|+.|..+|...+. +.. ....+ -.+...|+++...+..+.|++ ++....++.+
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~k----------------------l~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~ 70 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEK----------------------LIGRRSVTQIWVLEENNVLLMISGKKPQLYSH 70 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEE----------------------ecCcCceEEEEEEhhhCEEEEEeCCcceEEEE
Q ss_pred EccCCcccc----------------cccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeee----ec
Q 038537 117 RVLDKRCTC----------------VDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMT----LK 176 (358)
Q Consensus 117 d~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~ 176 (358)
++..-. . ...+..-.+....-.-......++++....+|.++.............. ..
T Consensus 71 ~L~~L~--~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~ 148 (302)
T smart00036 71 PLSALV--EKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPL 148 (302)
T ss_pred EHHHhh--hhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccC
Q ss_pred ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC--CcCCccccceeecccc-eeEEEeeeCCEEEEeeCCCeEEEEE
Q 038537 177 FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK--MSGGFNHGGFLQGHCF-AVLCLVAIEKLIFSGSEDTTIRVWR 253 (358)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~i~iwd 253 (358)
....++..+..+++.....+..|+..+-..++++.. ....-........... ...++..-++--+.-+.|....+-|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~~~v~Vn 228 (302)
T smart00036 149 ISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDEFGVFVN 228 (302)
T ss_pred CCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECcEEEEEe
Q ss_pred cCC-CceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 254 RAE-GGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 254 ~~~-~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
... . ......-.-.....++++... +|+.-+.++ |.|+++.+..
T Consensus 229 ~~G~~----~~r~~~l~w~~~p~~~~~~~p--------yll~~~~~~-ievr~l~~~~ 273 (302)
T smart00036 229 LYGKR----RSRNPILHWEFMPESFAYHSP--------YLLAFHDNG-IEIRSIKTGE 273 (302)
T ss_pred CCCCc----cccceEEEcCCcccEEEEECC--------EEEEEcCCc-EEEEECCCCc
No 500
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=76.43 E-value=53 Score=28.79 Aligned_cols=157 Identities=8% Similarity=-0.025 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCc
Q 038537 89 RDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENS 168 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 168 (358)
.+....+..++++.+++.+..-..++-||--... -...-......++.+.+.+++..++++...+.+.--|-......
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~--W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~ 315 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY--WQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEED 315 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecCCCCcc--eEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccc
Q ss_pred ceeeeeecc-cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe-eeCCEEEEeeCC
Q 038537 169 HTLTMTLKF-QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV-AIEKLIFSGSED 246 (358)
Q Consensus 169 ~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d 246 (358)
..+...... ....+..+.+. +...++.++..|.+....-.- ...........-......+. .+++..+..+.+
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~---~d~~~~a~G~~G~v~~s~D~G--~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYR---SKKEAWAAGGSGILLRSTDGG--KSWKRDKGADNIAANLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred cceeecccCCCCcceEEEEEc---CCCcEEEEECCCcEEEeCCCC--cceeEccccCCCCcceeEEEEcCCCceEEEeCC
Q ss_pred CeEEEE
Q 038537 247 TTIRVW 252 (358)
Q Consensus 247 g~i~iw 252 (358)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Done!