Query 038537
Match_columns 358
No_of_seqs 759 out of 1946
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 21:03:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.9E-47 6.3E-52 330.3 33.0 267 1-307 122-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 1.3E-46 4.4E-51 314.3 33.8 265 1-307 50-320 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 6.9E-46 2.3E-50 312.9 33.5 268 1-305 69-340 (340)
4 4gqb_B Methylosome protein 50; 100.0 2.9E-45 9.8E-50 308.4 31.5 273 2-310 45-333 (344)
5 2pbi_B Guanine nucleotide-bind 100.0 1.3E-44 4.3E-49 306.5 33.9 273 1-305 78-354 (354)
6 2ynn_A Coatomer subunit beta'; 100.0 1.9E-44 6.4E-49 299.3 34.2 271 1-308 27-302 (304)
7 2ynn_A Coatomer subunit beta'; 100.0 1.9E-43 6.4E-48 293.3 35.1 250 20-308 4-259 (304)
8 3iz6_a 40S ribosomal protein R 100.0 2E-44 6.8E-49 308.5 29.1 282 1-308 80-375 (380)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-43 8.8E-48 297.6 33.9 282 1-310 30-337 (345)
10 4ery_A WD repeat-containing pr 100.0 5E-43 1.7E-47 292.1 35.1 266 1-307 37-311 (312)
11 4g56_B MGC81050 protein; prote 100.0 1.1E-43 3.7E-48 301.0 30.8 273 1-309 56-344 (357)
12 2hes_X YDR267CP; beta-propelle 100.0 4.3E-43 1.5E-47 294.5 33.6 287 1-308 26-328 (330)
13 2xzm_R RACK1; ribosome, transl 100.0 9.9E-43 3.4E-47 294.0 35.9 270 1-308 41-340 (343)
14 3frx_A Guanine nucleotide-bind 100.0 8.4E-43 2.9E-47 291.3 33.5 268 1-308 32-317 (319)
15 1vyh_C Platelet-activating fac 100.0 1.7E-42 5.9E-47 299.3 33.2 257 22-326 101-381 (410)
16 1nr0_A Actin interacting prote 100.0 1.4E-42 4.9E-47 314.6 33.7 280 2-308 163-567 (611)
17 3ow8_A WD repeat-containing pr 100.0 1.1E-42 3.7E-47 290.6 29.7 261 19-325 22-290 (321)
18 1erj_A Transcriptional repress 100.0 6.2E-42 2.1E-46 294.4 34.8 279 1-309 78-390 (393)
19 1nr0_A Actin interacting prote 100.0 2.1E-41 7.3E-46 307.0 38.8 291 2-308 33-355 (611)
20 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-40 4.2E-45 281.3 32.9 263 19-309 5-284 (345)
21 2pm7_B Protein transport prote 100.0 2.6E-40 8.9E-45 273.5 31.7 260 23-308 3-285 (297)
22 2hes_X YDR267CP; beta-propelle 100.0 3.2E-40 1.1E-44 277.0 32.4 264 18-308 3-280 (330)
23 4gga_A P55CDC, cell division c 100.0 5.7E-40 1.9E-44 284.8 34.1 269 2-309 119-396 (420)
24 4gqb_B Methylosome protein 50; 100.0 1.3E-40 4.5E-45 280.0 29.0 267 11-308 16-289 (344)
25 3ei3_B DNA damage-binding prot 100.0 7E-40 2.4E-44 281.0 32.8 272 1-308 88-382 (383)
26 1p22_A F-BOX/WD-repeat protein 100.0 2.2E-40 7.7E-45 288.7 29.8 266 1-310 145-416 (435)
27 1sq9_A Antiviral protein SKI8; 100.0 6.2E-40 2.1E-44 282.6 32.1 270 1-308 28-395 (397)
28 1got_B GT-beta; complex (GTP-b 100.0 2E-39 6.8E-44 273.4 34.0 249 19-308 45-301 (340)
29 2ymu_A WD-40 repeat protein; u 100.0 6.3E-40 2.2E-44 296.2 33.0 257 1-305 317-577 (577)
30 3k26_A Polycomb protein EED; W 100.0 3.3E-40 1.1E-44 281.1 29.1 274 2-307 37-365 (366)
31 4g56_B MGC81050 protein; prote 100.0 4.9E-40 1.7E-44 278.6 29.6 268 3-308 20-301 (357)
32 3dm0_A Maltose-binding peripla 100.0 1.2E-39 4.1E-44 300.1 34.4 267 1-307 397-692 (694)
33 2xzm_R RACK1; ribosome, transl 100.0 2.9E-39 9.9E-44 272.8 33.0 255 20-309 12-286 (343)
34 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.2E-39 1.4E-43 281.6 35.1 259 1-309 131-392 (445)
35 2ymu_A WD-40 repeat protein; u 100.0 2E-39 6.8E-44 292.9 33.9 271 1-326 276-550 (577)
36 3v7d_B Cell division control p 100.0 4.7E-39 1.6E-43 282.8 35.3 264 1-308 134-421 (464)
37 3frx_A Guanine nucleotide-bind 100.0 5.9E-39 2E-43 268.0 33.9 251 20-308 8-267 (319)
38 2pbi_B Guanine nucleotide-bind 100.0 8.1E-39 2.8E-43 270.9 34.7 251 20-308 55-315 (354)
39 1k8k_C P40, ARP2/3 complex 41 100.0 2.8E-39 9.5E-44 276.1 31.8 279 1-309 22-362 (372)
40 2ovr_B FBW7, F-BOX/WD repeat p 100.0 9.5E-39 3.2E-43 279.3 35.7 261 1-309 171-443 (445)
41 4e54_B DNA damage-binding prot 100.0 3.1E-40 1.1E-44 287.7 26.1 274 1-309 134-431 (435)
42 3zwl_B Eukaryotic translation 100.0 9E-39 3.1E-43 272.4 34.5 269 1-308 46-346 (369)
43 4h5i_A Guanine nucleotide-exch 100.0 5.6E-40 1.9E-44 279.0 26.5 279 1-308 28-343 (365)
44 3vl1_A 26S proteasome regulato 100.0 2.4E-39 8.1E-44 281.1 31.0 272 1-310 70-367 (420)
45 4ggc_A P55CDC, cell division c 100.0 7.2E-39 2.5E-43 267.6 32.7 270 2-309 39-316 (318)
46 4ery_A WD repeat-containing pr 100.0 8.7E-39 3E-43 266.5 32.9 262 18-326 12-280 (312)
47 4aez_A CDC20, WD repeat-contai 100.0 1E-38 3.5E-43 275.3 34.1 268 2-309 106-381 (401)
48 4aow_A Guanine nucleotide-bind 100.0 2.1E-38 7.1E-43 267.4 35.2 271 1-309 53-338 (340)
49 3iz6_a 40S ribosomal protein R 100.0 6.7E-40 2.3E-44 280.4 26.0 266 9-308 46-329 (380)
50 3dwl_C Actin-related protein 2 100.0 3.3E-40 1.1E-44 282.5 23.3 283 1-306 25-377 (377)
51 3bg1_A Protein SEC13 homolog; 100.0 7.7E-40 2.6E-44 273.0 24.7 260 23-308 7-293 (316)
52 1gxr_A ESG1, transducin-like e 100.0 1.7E-38 5.9E-43 267.4 32.7 263 1-307 65-336 (337)
53 2pm9_A Protein WEB1, protein t 100.0 6.1E-39 2.1E-43 278.1 30.5 270 6-311 42-340 (416)
54 3odt_A Protein DOA1; ubiquitin 100.0 5.9E-38 2E-42 261.4 35.2 261 1-309 31-297 (313)
55 3vl1_A 26S proteasome regulato 100.0 4.3E-39 1.5E-43 279.5 28.8 272 1-308 111-419 (420)
56 2j04_B YDR362CP, TAU91; beta p 100.0 2.3E-39 7.9E-44 285.5 26.6 283 2-308 176-517 (524)
57 3i2n_A WD repeat-containing pr 100.0 3.3E-38 1.1E-42 267.9 30.6 276 2-309 34-354 (357)
58 4a11_B DNA excision repair pro 100.0 8.4E-38 2.9E-42 270.1 32.4 275 1-310 58-367 (408)
59 2pm9_A Protein WEB1, protein t 100.0 5.3E-39 1.8E-43 278.5 23.8 280 1-308 81-414 (416)
60 1r5m_A SIR4-interacting protei 100.0 1.9E-37 6.5E-42 269.3 32.2 265 1-310 60-363 (425)
61 3jrp_A Fusion protein of prote 100.0 1.5E-37 5.3E-42 265.8 30.0 265 19-309 1-288 (379)
62 1gxr_A ESG1, transducin-like e 100.0 2.6E-37 8.9E-42 260.2 30.6 269 2-308 24-296 (337)
63 2pm7_B Protein transport prote 100.0 3.3E-37 1.1E-41 254.9 30.2 236 1-256 23-285 (297)
64 4aow_A Guanine nucleotide-bind 100.0 3.6E-37 1.2E-41 259.8 31.0 256 17-308 26-286 (340)
65 2aq5_A Coronin-1A; WD40 repeat 100.0 7.7E-38 2.6E-42 270.0 27.4 275 2-308 50-342 (402)
66 1r5m_A SIR4-interacting protei 100.0 1.1E-37 3.6E-42 270.9 28.4 281 1-307 122-424 (425)
67 3gre_A Serine/threonine-protei 100.0 2E-37 6.8E-42 270.4 30.1 286 1-305 78-437 (437)
68 1k8k_C P40, ARP2/3 complex 41 100.0 2.1E-36 7.1E-41 258.3 33.8 252 24-308 3-274 (372)
69 1erj_A Transcriptional repress 100.0 1.7E-36 5.7E-41 260.6 32.8 295 10-327 41-354 (393)
70 3dw8_B Serine/threonine-protei 100.0 8.5E-37 2.9E-41 267.2 31.1 292 1-307 42-445 (447)
71 3dm0_A Maltose-binding peripla 100.0 5E-37 1.7E-41 282.7 30.0 254 21-308 374-632 (694)
72 3f3f_A Nucleoporin SEH1; struc 100.0 2.9E-36 1E-40 254.8 31.7 264 22-309 4-338 (351)
73 1sq9_A Antiviral protein SKI8; 100.0 1.4E-36 4.7E-41 261.7 29.4 255 21-308 8-322 (397)
74 3v7d_B Cell division control p 100.0 1.8E-35 6.3E-40 260.0 34.1 278 1-307 175-462 (464)
75 3bg1_A Protein SEC13 homolog; 100.0 1.4E-36 4.7E-41 253.3 25.1 235 1-256 27-293 (316)
76 3k26_A Polycomb protein EED; W 100.0 3.9E-36 1.3E-40 255.9 28.1 259 24-309 13-319 (366)
77 3i2n_A WD repeat-containing pr 100.0 5.2E-36 1.8E-40 254.3 28.6 296 23-351 12-334 (357)
78 3mkq_A Coatomer beta'-subunit; 100.0 1.5E-35 5E-40 278.1 34.3 272 1-309 27-303 (814)
79 1yfq_A Cell cycle arrest prote 100.0 2.8E-35 9.7E-40 248.4 31.8 263 1-305 25-321 (342)
80 1p22_A F-BOX/WD-repeat protein 100.0 3E-35 1E-39 256.4 32.6 238 26-310 130-367 (435)
81 3dwl_C Actin-related protein 2 100.0 4.9E-37 1.7E-41 262.7 20.7 255 24-307 6-280 (377)
82 3ei3_B DNA damage-binding prot 100.0 8.2E-36 2.8E-40 255.7 28.2 257 14-308 58-339 (383)
83 3sfz_A APAF-1, apoptotic pepti 100.0 1.5E-35 5E-40 289.7 31.8 270 1-308 629-913 (1249)
84 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-35 6.2E-40 289.1 32.0 272 1-308 671-1034(1249)
85 3gre_A Serine/threonine-protei 100.0 8.3E-36 2.8E-40 260.2 26.0 258 13-309 47-360 (437)
86 1pgu_A Actin interacting prote 100.0 1.5E-34 5E-39 263.0 35.2 271 1-308 175-572 (615)
87 3mmy_A MRNA export factor; mRN 100.0 2.8E-35 9.6E-40 250.7 28.6 270 1-309 56-347 (368)
88 1yfq_A Cell cycle arrest prote 100.0 3.4E-35 1.2E-39 247.9 28.6 280 23-349 5-315 (342)
89 3lrv_A PRE-mRNA-splicing facto 100.0 1.6E-35 5.5E-40 250.0 26.0 271 1-307 50-332 (343)
90 3odt_A Protein DOA1; ubiquitin 100.0 2.5E-34 8.7E-39 239.4 32.9 244 18-308 7-255 (313)
91 3mkq_A Coatomer beta'-subunit; 100.0 9.7E-35 3.3E-39 272.5 33.9 250 20-308 4-259 (814)
92 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-34 3.9E-39 272.2 33.3 289 1-309 71-520 (902)
93 1pgu_A Actin interacting prote 100.0 3.7E-34 1.2E-38 260.4 34.3 269 2-308 33-328 (615)
94 2j04_B YDR362CP, TAU91; beta p 100.0 3.9E-36 1.3E-40 265.0 20.4 232 41-308 175-428 (524)
95 3jro_A Fusion protein of prote 100.0 1.9E-35 6.6E-40 273.7 25.3 262 22-309 2-286 (753)
96 4gq1_A NUP37; propeller, trans 100.0 1E-34 3.5E-39 249.3 27.9 241 39-308 101-389 (393)
97 3dw8_B Serine/threonine-protei 100.0 6.5E-35 2.2E-39 255.2 26.6 260 27-309 26-374 (447)
98 3jrp_A Fusion protein of prote 100.0 1.6E-34 5.5E-39 247.1 28.4 237 1-257 25-288 (379)
99 3mmy_A MRNA export factor; mRN 100.0 1.4E-34 4.9E-39 246.4 27.7 261 10-308 20-304 (368)
100 3zwl_B Eukaryotic translation 100.0 2.2E-33 7.6E-38 239.1 34.7 250 20-308 23-304 (369)
101 4e54_B DNA damage-binding prot 100.0 1.7E-34 6E-39 251.4 28.2 253 20-308 110-387 (435)
102 2xyi_A Probable histone-bindin 100.0 9.6E-34 3.3E-38 246.3 29.4 264 23-308 122-410 (430)
103 4aez_A CDC20, WD repeat-contai 100.0 2.3E-33 7.7E-38 241.9 30.3 234 32-308 96-336 (401)
104 2j04_A TAU60, YPL007P, hypothe 100.0 4.1E-34 1.4E-38 246.7 23.2 253 1-307 29-296 (588)
105 2oaj_A Protein SNI1; WD40 repe 100.0 1.9E-33 6.4E-38 264.0 29.6 289 2-316 367-791 (902)
106 2aq5_A Coronin-1A; WD40 repeat 100.0 6.1E-33 2.1E-37 239.4 30.1 241 34-309 39-300 (402)
107 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.6E-32 9E-37 238.8 33.2 248 30-309 103-392 (450)
108 2w18_A PALB2, fancn, partner a 100.0 5.9E-33 2E-37 225.3 25.7 266 2-306 57-355 (356)
109 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-32 4.7E-37 232.2 28.7 252 1-270 25-350 (351)
110 3jro_A Fusion protein of prote 100.0 1.2E-32 4.2E-37 254.9 26.5 236 1-256 23-285 (753)
111 4a11_B DNA excision repair pro 100.0 2.9E-32 9.9E-37 235.4 26.0 276 7-308 21-323 (408)
112 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.3E-31 7.7E-36 232.9 31.7 205 85-306 98-337 (450)
113 4gga_A P55CDC, cell division c 100.0 3.6E-31 1.2E-35 229.5 32.6 250 33-327 109-366 (420)
114 4h5i_A Guanine nucleotide-exch 100.0 1.3E-32 4.5E-37 233.6 20.6 227 3-257 98-344 (365)
115 1l0q_A Surface layer protein; 100.0 1.5E-30 5E-35 223.7 33.3 261 1-308 4-275 (391)
116 2xyi_A Probable histone-bindin 100.0 2.6E-31 8.9E-36 231.0 27.7 239 1-257 143-411 (430)
117 3vu4_A KMHSV2; beta-propeller 100.0 9.3E-31 3.2E-35 221.6 29.9 266 1-312 33-340 (355)
118 4ggc_A P55CDC, cell division c 100.0 1.6E-30 5.5E-35 217.0 30.7 251 32-327 28-286 (318)
119 3bws_A Protein LP49; two-domai 100.0 1.7E-30 6E-35 226.2 29.6 262 1-307 136-431 (433)
120 3vu4_A KMHSV2; beta-propeller 100.0 1.6E-30 5.5E-35 220.1 27.9 248 13-310 3-273 (355)
121 3lrv_A PRE-mRNA-splicing facto 100.0 3.1E-31 1.1E-35 223.7 22.7 232 37-309 46-293 (343)
122 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.8E-29 1.3E-33 215.9 28.2 260 2-307 78-386 (415)
123 4gq1_A NUP37; propeller, trans 100.0 5.1E-30 1.7E-34 220.1 22.5 230 1-255 103-388 (393)
124 2j04_A TAU60, YPL007P, hypothe 100.0 4.4E-30 1.5E-34 221.7 16.3 239 1-297 99-350 (588)
125 3bws_A Protein LP49; two-domai 100.0 2.2E-27 7.6E-32 206.6 27.7 266 4-308 94-390 (433)
126 1l0q_A Surface layer protein; 100.0 1.7E-26 5.7E-31 198.4 30.5 267 2-308 47-342 (391)
127 1nir_A Nitrite reductase; hemo 100.0 5.9E-27 2E-31 208.2 27.8 312 1-348 151-500 (543)
128 1ri6_A Putative isomerase YBHE 100.0 2.7E-25 9.1E-30 187.3 30.2 277 2-308 8-308 (343)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 3.5E-25 1.2E-29 191.1 29.4 233 9-282 159-408 (415)
130 2w18_A PALB2, fancn, partner a 99.9 5.3E-26 1.8E-30 184.7 21.3 177 7-210 155-355 (356)
131 3u4y_A Uncharacterized protein 99.9 1.5E-24 5.2E-29 181.9 28.7 272 2-308 13-304 (331)
132 2ojh_A Uncharacterized protein 99.9 1.1E-24 3.9E-29 179.4 24.6 254 4-299 17-293 (297)
133 1nir_A Nitrite reductase; hemo 99.9 1.7E-23 5.8E-28 186.0 27.8 288 1-309 192-515 (543)
134 3hfq_A Uncharacterized protein 99.9 2.6E-22 8.9E-27 169.4 30.3 274 7-308 14-317 (347)
135 1pby_B Quinohemoprotein amine 99.9 2.5E-23 8.5E-28 174.8 23.8 266 1-309 3-311 (337)
136 2ecf_A Dipeptidyl peptidase IV 99.9 7.7E-23 2.6E-27 189.9 26.0 263 2-308 51-413 (741)
137 3vgz_A Uncharacterized protein 99.9 6.7E-22 2.3E-26 167.2 29.3 260 8-298 68-334 (353)
138 2ojh_A Uncharacterized protein 99.9 1.8E-22 6.1E-27 166.2 22.4 223 44-308 17-258 (297)
139 2z3z_A Dipeptidyl aminopeptida 99.9 2.1E-22 7.2E-27 186.0 24.0 263 2-307 38-388 (706)
140 2oit_A Nucleoporin 214KDA; NH2 99.9 6.9E-22 2.3E-26 171.1 25.7 231 9-257 23-279 (434)
141 1xfd_A DIP, dipeptidyl aminope 99.9 1.3E-22 4.3E-27 188.0 21.7 271 5-309 33-394 (723)
142 2oit_A Nucleoporin 214KDA; NH2 99.9 2.6E-21 8.9E-26 167.5 26.4 198 1-213 50-279 (434)
143 1ri6_A Putative isomerase YBHE 99.9 3E-21 1E-25 162.4 24.5 239 41-308 7-262 (343)
144 1jmx_B Amine dehydrogenase; ox 99.9 4.5E-21 1.5E-25 161.8 24.9 265 1-308 13-325 (349)
145 3scy_A Hypothetical bacterial 99.9 1.6E-19 5.6E-24 153.1 33.1 271 6-308 24-337 (361)
146 2z3z_A Dipeptidyl aminopeptida 99.9 5.5E-21 1.9E-25 176.5 26.0 277 7-308 99-435 (706)
147 2ecf_A Dipeptidyl peptidase IV 99.9 5.7E-21 1.9E-25 177.4 24.2 257 30-307 37-366 (741)
148 1k32_A Tricorn protease; prote 99.9 1E-20 3.6E-25 181.5 24.2 268 2-307 217-501 (1045)
149 1jof_A Carboxy-CIS,CIS-muconat 99.9 6.8E-20 2.3E-24 155.6 25.9 273 2-308 5-341 (365)
150 1k32_A Tricorn protease; prote 99.9 1.7E-19 6E-24 173.1 29.8 262 2-310 311-639 (1045)
151 3vgz_A Uncharacterized protein 99.9 1.1E-19 3.8E-24 153.5 24.9 238 30-308 41-303 (353)
152 3u4y_A Uncharacterized protein 99.9 3.5E-20 1.2E-24 155.2 21.2 233 39-308 10-252 (331)
153 1z68_A Fibroblast activation p 99.9 8.8E-20 3E-24 168.8 23.2 270 3-308 30-391 (719)
154 3scy_A Hypothetical bacterial 99.9 4.1E-18 1.4E-22 144.5 31.5 266 2-280 64-360 (361)
155 3hfq_A Uncharacterized protein 99.8 2.8E-18 9.6E-23 144.7 28.7 240 8-258 62-321 (347)
156 3o4h_A Acylamino-acid-releasin 99.8 3.7E-19 1.3E-23 160.6 22.0 251 2-306 36-313 (582)
157 1pby_B Quinohemoprotein amine 99.8 7.6E-19 2.6E-23 147.3 20.0 219 2-258 49-312 (337)
158 2oiz_A Aromatic amine dehydrog 99.8 1.7E-17 5.9E-22 140.2 26.3 268 7-308 29-334 (361)
159 3o4h_A Acylamino-acid-releasin 99.8 1.3E-18 4.6E-23 156.9 20.8 228 29-306 21-274 (582)
160 1xfd_A DIP, dipeptidyl aminope 99.8 2.9E-18 9.8E-23 158.8 23.0 256 8-294 90-426 (723)
161 4a5s_A Dipeptidyl peptidase 4 99.8 5E-17 1.7E-21 150.6 29.1 269 2-308 31-398 (740)
162 3pe7_A Oligogalacturonate lyas 99.8 2.5E-17 8.4E-22 141.0 24.8 264 2-308 50-382 (388)
163 3fvz_A Peptidyl-glycine alpha- 99.8 2.6E-16 8.8E-21 131.5 27.9 244 30-308 24-322 (329)
164 3azo_A Aminopeptidase; POP fam 99.8 1.3E-16 4.3E-21 146.3 26.4 266 6-307 44-366 (662)
165 1q7f_A NHL, brain tumor CG1071 99.8 1.6E-15 5.5E-20 124.1 28.2 241 28-308 28-280 (286)
166 1z68_A Fibroblast activation p 99.8 1.2E-16 4.2E-21 147.8 23.6 272 8-308 89-443 (719)
167 1jof_A Carboxy-CIS,CIS-muconat 99.8 7.7E-16 2.7E-20 130.6 26.1 236 2-257 54-342 (365)
168 4a5s_A Dipeptidyl peptidase 4 99.7 2.5E-16 8.5E-21 145.9 21.4 244 32-307 19-352 (740)
169 1jmx_B Amine dehydrogenase; ox 99.7 3.7E-16 1.3E-20 131.6 19.5 234 36-308 8-284 (349)
170 3pe7_A Oligogalacturonate lyas 99.7 1.7E-15 5.7E-20 129.6 23.7 259 13-308 14-329 (388)
171 3c5m_A Oligogalacturonate lyas 99.7 6.1E-16 2.1E-20 132.6 19.0 273 9-308 60-382 (396)
172 3dsm_A Uncharacterized protein 99.7 4.7E-15 1.6E-19 123.7 23.7 257 6-307 14-301 (328)
173 2dg1_A DRP35, lactonase; beta 99.7 1.4E-14 4.9E-19 121.2 26.2 262 5-307 23-313 (333)
174 3no2_A Uncharacterized protein 99.7 1.5E-14 5.2E-19 117.1 23.5 216 38-295 4-230 (276)
175 1q7f_A NHL, brain tumor CG1071 99.7 2.9E-14 1E-18 116.6 25.0 219 2-257 44-281 (286)
176 1qks_A Cytochrome CD1 nitrite 99.7 1.2E-13 4.2E-18 122.6 30.6 274 2-309 170-478 (567)
177 3azo_A Aminopeptidase; POP fam 99.7 1.1E-14 3.7E-19 133.5 24.5 258 8-307 101-410 (662)
178 2gop_A Trilobed protease; beta 99.7 3.3E-14 1.1E-18 119.6 24.7 236 8-307 42-330 (347)
179 2gop_A Trilobed protease; beta 99.7 3.8E-14 1.3E-18 119.3 24.6 216 33-307 18-290 (347)
180 1rwi_B Serine/threonine-protei 99.7 2.6E-14 9E-19 115.8 22.4 236 31-309 25-265 (270)
181 2xdw_A Prolyl endopeptidase; a 99.7 1.8E-13 6.1E-18 126.3 29.1 240 31-309 126-415 (710)
182 3e5z_A Putative gluconolactona 99.7 8.2E-14 2.8E-18 114.5 23.8 242 19-308 17-284 (296)
183 2oiz_A Aromatic amine dehydrog 99.6 2.7E-13 9.1E-18 114.5 25.9 244 7-282 79-358 (361)
184 2xdw_A Prolyl endopeptidase; a 99.6 2.6E-13 9E-18 125.2 27.7 205 87-307 122-365 (710)
185 2bkl_A Prolyl endopeptidase; m 99.6 6.4E-14 2.2E-18 128.9 23.3 242 28-308 119-397 (695)
186 2bkl_A Prolyl endopeptidase; m 99.6 1.8E-13 6E-18 126.0 24.6 205 86-307 117-348 (695)
187 3c5m_A Oligogalacturonate lyas 99.6 1.1E-14 3.7E-19 124.8 15.2 254 13-308 14-329 (396)
188 3no2_A Uncharacterized protein 99.6 1.8E-13 6E-18 110.9 21.4 183 1-216 7-199 (276)
189 2mad_H Methylamine dehydrogena 99.6 1E-11 3.5E-16 105.0 30.9 266 10-309 48-351 (373)
190 3dsm_A Uncharacterized protein 99.6 1.2E-12 4E-17 109.2 24.8 223 3-257 58-302 (328)
191 2z2n_A Virginiamycin B lyase; 99.6 1.5E-11 5E-16 101.0 31.0 258 6-308 33-295 (299)
192 3sjl_D Methylamine dehydrogena 99.6 3.3E-12 1.1E-16 106.7 26.7 271 8-309 58-364 (386)
193 3e5z_A Putative gluconolactona 99.6 1E-12 3.5E-17 107.9 23.0 224 1-257 42-287 (296)
194 3fvz_A Peptidyl-glycine alpha- 99.6 3E-12 1E-16 106.8 25.7 232 9-257 69-323 (329)
195 1yr2_A Prolyl oligopeptidase; 99.5 2.4E-12 8.4E-17 119.2 25.0 204 87-307 160-392 (741)
196 2dg1_A DRP35, lactonase; beta 99.5 1.4E-11 4.9E-16 102.9 27.1 216 2-246 59-300 (333)
197 2z2n_A Virginiamycin B lyase; 99.5 2.5E-11 8.5E-16 99.6 28.2 237 28-306 13-253 (299)
198 1rwi_B Serine/threonine-protei 99.5 2.4E-12 8E-17 104.2 21.6 222 4-257 41-265 (270)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 3.8E-12 1.3E-16 105.4 23.1 242 31-308 19-299 (314)
200 2qc5_A Streptogramin B lactona 99.5 6.2E-11 2.1E-15 97.3 29.8 258 4-306 36-298 (300)
201 1qks_A Cytochrome CD1 nitrite 99.5 2.7E-11 9.1E-16 107.7 26.4 238 38-308 166-421 (567)
202 1xip_A Nucleoporin NUP159; bet 99.5 6.3E-13 2.1E-17 111.5 15.1 163 1-198 51-230 (388)
203 3c75_H MADH, methylamine dehyd 99.5 3.4E-11 1.2E-15 102.5 25.0 269 9-309 99-403 (426)
204 1xip_A Nucleoporin NUP159; bet 99.5 3E-12 1E-16 107.4 18.2 174 91-294 39-230 (388)
205 1yr2_A Prolyl oligopeptidase; 99.5 2.7E-11 9.1E-16 112.3 26.3 239 31-308 164-441 (741)
206 3hrp_A Uncharacterized protein 99.5 1.1E-10 3.8E-15 100.0 28.2 232 32-307 133-409 (409)
207 3q7m_A Lipoprotein YFGL, BAMB; 99.5 4.2E-11 1.4E-15 101.8 25.1 263 2-309 56-338 (376)
208 3g4e_A Regucalcin; six bladed 99.4 7.9E-10 2.7E-14 90.7 29.7 210 39-282 25-252 (297)
209 3q7m_A Lipoprotein YFGL, BAMB; 99.4 6.2E-11 2.1E-15 100.8 23.4 261 2-305 106-375 (376)
210 2qc5_A Streptogramin B lactona 99.4 7E-10 2.4E-14 90.9 27.6 236 29-306 19-258 (300)
211 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 3E-10 1E-14 93.9 25.3 226 5-257 42-300 (314)
212 1yiq_A Quinohemoprotein alcoho 99.4 4E-11 1.4E-15 109.5 21.3 277 2-310 73-507 (689)
213 1kb0_A Quinohemoprotein alcoho 99.4 9E-11 3.1E-15 107.0 23.5 292 2-308 131-567 (677)
214 1kb0_A Quinohemoprotein alcoho 99.4 5.1E-11 1.7E-15 108.6 20.3 276 2-310 80-509 (677)
215 3iuj_A Prolyl endopeptidase; h 99.3 2.8E-10 9.5E-15 104.6 22.6 238 31-308 130-405 (693)
216 1yiq_A Quinohemoprotein alcoho 99.3 6.6E-10 2.3E-14 101.6 23.2 269 2-282 124-528 (689)
217 1mda_H Methylamine dehydrogena 99.3 2.1E-10 7.3E-15 96.0 18.0 260 10-309 47-347 (368)
218 2ghs_A AGR_C_1268P; regucalcin 99.3 3.3E-09 1.1E-13 88.2 24.9 208 39-282 61-282 (326)
219 3dr2_A Exported gluconolactona 99.3 2E-09 6.9E-14 88.6 22.4 214 1-247 59-298 (305)
220 3hrp_A Uncharacterized protein 99.3 1.3E-09 4.6E-14 93.3 22.0 199 90-307 131-353 (409)
221 3iuj_A Prolyl endopeptidase; h 99.3 2.6E-10 8.9E-15 104.8 18.5 203 86-307 125-358 (693)
222 3dr2_A Exported gluconolactona 99.3 2.6E-09 8.7E-14 88.0 22.3 227 25-299 40-298 (305)
223 2hz6_A Endoplasmic reticulum t 99.2 3.3E-12 1.1E-16 108.1 4.5 184 37-259 7-195 (369)
224 3g4e_A Regucalcin; six bladed 99.2 9.1E-09 3.1E-13 84.3 24.9 187 2-212 28-229 (297)
225 2hz6_A Endoplasmic reticulum t 99.2 7.9E-12 2.7E-16 105.8 4.3 180 1-215 11-195 (369)
226 3sjl_D Methylamine dehydrogena 99.2 1.2E-08 4.2E-13 85.3 23.3 242 7-282 107-384 (386)
227 3hxj_A Pyrrolo-quinoline quino 99.2 1E-09 3.6E-14 91.3 16.9 187 92-310 139-326 (330)
228 1kv9_A Type II quinohemoprotei 99.1 4.2E-09 1.4E-13 96.0 19.4 190 2-214 69-335 (668)
229 2ghs_A AGR_C_1268P; regucalcin 99.1 8.7E-08 3E-12 79.6 25.9 183 2-211 64-259 (326)
230 3hxj_A Pyrrolo-quinoline quino 99.1 2.5E-09 8.7E-14 89.0 16.1 248 2-306 33-282 (330)
231 2qe8_A Uncharacterized protein 99.1 8.7E-08 3E-12 80.2 24.8 249 30-303 17-316 (343)
232 2ece_A 462AA long hypothetical 99.1 1.1E-07 3.7E-12 80.3 24.6 221 1-244 98-399 (462)
233 2mad_H Methylamine dehydrogena 99.1 2.3E-07 7.9E-12 78.3 26.9 219 7-258 95-352 (373)
234 1fwx_A Nitrous oxide reductase 99.0 3.5E-08 1.2E-12 86.2 19.8 263 2-296 18-406 (595)
235 1kv9_A Type II quinohemoprotei 99.0 9.1E-08 3.1E-12 87.3 23.0 253 2-259 120-491 (668)
236 3c75_H MADH, methylamine dehyd 99.0 1.3E-07 4.6E-12 80.5 21.5 228 7-267 147-409 (426)
237 1npe_A Nidogen, entactin; glyc 99.0 6.4E-06 2.2E-10 66.1 29.4 237 9-282 10-261 (267)
238 2ad6_A Methanol dehydrogenase 99.0 3.8E-07 1.3E-11 81.5 23.8 254 2-261 118-499 (571)
239 2ad6_A Methanol dehydrogenase 98.9 2.7E-07 9.1E-12 82.5 21.0 191 2-214 65-337 (571)
240 1k3i_A Galactose oxidase precu 98.9 2E-07 6.9E-12 85.1 20.5 256 10-297 220-530 (656)
241 2ece_A 462AA long hypothetical 98.9 1.1E-06 3.7E-11 74.4 23.0 232 38-296 94-399 (462)
242 2qe8_A Uncharacterized protein 98.9 6.3E-08 2.2E-12 81.1 15.1 209 90-306 17-276 (343)
243 2iwa_A Glutamine cyclotransfer 98.8 3E-06 1E-10 67.2 22.9 200 91-310 22-239 (266)
244 1mda_H Methylamine dehydrogena 98.8 3.1E-07 1.1E-11 76.9 18.1 231 7-281 94-366 (368)
245 4a2l_A BT_4663, two-component 98.8 2.7E-05 9.2E-10 72.9 33.0 277 2-308 228-526 (795)
246 1w6s_A Methanol dehydrogenase 98.8 1.8E-06 6E-11 77.3 23.6 167 2-170 124-348 (599)
247 1w6s_A Methanol dehydrogenase 98.8 9.5E-07 3.3E-11 79.0 21.2 193 2-215 65-345 (599)
248 1flg_A Protein (quinoprotein e 98.8 1.3E-06 4.5E-11 78.2 22.0 167 2-169 120-360 (582)
249 1flg_A Protein (quinoprotein e 98.8 2.5E-06 8.6E-11 76.3 23.2 196 2-214 71-357 (582)
250 3nok_A Glutaminyl cyclase; bet 98.8 4.2E-07 1.4E-11 71.2 15.5 170 2-199 68-253 (268)
251 2iwa_A Glutamine cyclotransfer 98.8 1.3E-06 4.4E-11 69.2 18.5 179 8-213 43-238 (266)
252 1npe_A Nidogen, entactin; glyc 98.8 3.1E-05 1.1E-09 62.0 27.1 197 90-308 36-238 (267)
253 3nol_A Glutamine cyclotransfer 98.8 1.1E-06 3.7E-11 68.9 17.3 172 2-201 56-244 (262)
254 1fwx_A Nitrous oxide reductase 98.7 8.5E-07 2.9E-11 77.7 17.8 250 41-308 17-361 (595)
255 2fp8_A Strictosidine synthase; 98.7 1.1E-05 3.7E-10 66.7 22.9 250 34-308 23-313 (322)
256 4a2l_A BT_4663, two-component 98.7 9.1E-05 3.1E-09 69.3 30.2 272 2-307 276-570 (795)
257 1k3i_A Galactose oxidase precu 98.6 2.6E-06 8.8E-11 77.8 18.7 240 38-308 197-497 (656)
258 2fp8_A Strictosidine synthase; 98.6 3.9E-05 1.3E-09 63.4 24.3 228 1-257 32-314 (322)
259 3nol_A Glutamine cyclotransfer 98.6 1.3E-05 4.3E-10 62.9 19.5 190 92-307 45-253 (262)
260 3nok_A Glutaminyl cyclase; bet 98.6 1.1E-05 3.9E-10 63.1 18.5 186 91-296 56-254 (268)
261 2p4o_A Hypothetical protein; p 98.6 0.00019 6.4E-09 58.8 28.4 221 31-282 33-268 (306)
262 3mbr_X Glutamine cyclotransfer 98.6 1.5E-05 5.2E-10 61.9 18.4 170 3-200 35-222 (243)
263 3v9f_A Two-component system se 98.5 0.0005 1.7E-08 64.2 32.0 281 2-307 224-523 (781)
264 3mbr_X Glutamine cyclotransfer 98.5 6.9E-05 2.4E-09 58.2 21.6 199 90-308 21-233 (243)
265 3qqz_A Putative uncharacterize 98.5 0.00012 4.1E-09 57.6 22.3 205 86-307 23-250 (255)
266 3v9f_A Two-component system se 98.5 0.00057 1.9E-08 63.8 30.7 276 2-308 176-478 (781)
267 3tc9_A Hypothetical hydrolase; 98.5 0.00016 5.3E-09 62.3 24.7 233 40-307 150-429 (430)
268 3v65_B Low-density lipoprotein 98.4 0.00065 2.2E-08 57.6 26.2 220 8-258 95-320 (386)
269 2vpj_A Kelch-like protein 12; 98.4 0.00054 1.9E-08 55.8 25.4 223 9-258 31-280 (301)
270 2xe4_A Oligopeptidase B; hydro 98.4 8.5E-05 2.9E-09 68.9 21.9 196 91-307 175-397 (751)
271 4hw6_A Hypothetical protein, I 98.3 0.00064 2.2E-08 58.5 24.8 238 34-307 143-432 (433)
272 3ii7_A Kelch-like protein 7; p 98.3 0.0008 2.7E-08 55.0 25.7 228 2-259 15-275 (306)
273 2p4o_A Hypothetical protein; p 98.3 0.00046 1.6E-08 56.5 21.6 200 90-307 32-241 (306)
274 3qqz_A Putative uncharacterize 98.3 0.00091 3.1E-08 52.6 22.1 205 25-254 22-251 (255)
275 2xn4_A Kelch-like protein 2; s 98.2 0.0011 3.9E-08 53.9 23.8 227 2-258 19-278 (302)
276 2xn4_A Kelch-like protein 2; s 98.2 0.001 3.5E-08 54.2 23.4 189 100-308 61-276 (302)
277 3v65_B Low-density lipoprotein 98.2 0.0016 5.5E-08 55.1 26.6 196 90-306 116-316 (386)
278 2vpj_A Kelch-like protein 12; 98.2 0.001 3.5E-08 54.1 23.4 188 100-307 62-277 (301)
279 3v64_C Agrin; beta propeller, 98.2 0.0017 5.9E-08 54.1 29.9 196 90-306 73-273 (349)
280 3ii7_A Kelch-like protein 7; p 98.1 0.002 7E-08 52.5 23.8 189 100-308 55-272 (306)
281 2xe4_A Oligopeptidase B; hydro 98.1 0.00025 8.7E-09 65.7 19.7 193 34-254 180-398 (751)
282 3v64_C Agrin; beta propeller, 98.1 0.0025 8.5E-08 53.2 28.5 218 9-258 53-277 (349)
283 3sov_A LRP-6, low-density lipo 98.1 0.0022 7.7E-08 52.6 28.3 220 8-258 12-240 (318)
284 1zgk_A Kelch-like ECH-associat 98.1 0.0027 9.1E-08 51.9 23.0 188 100-307 70-286 (308)
285 1ijq_A LDL receptor, low-densi 98.1 0.003 1E-07 51.9 28.6 201 90-308 30-238 (316)
286 2uvk_A YJHT; unknown function, 98.1 0.00078 2.7E-08 56.4 19.8 143 111-258 168-344 (357)
287 3p5b_L Low density lipoprotein 98.1 0.0039 1.3E-07 53.0 29.9 224 8-258 91-322 (400)
288 3amr_A 3-phytase; beta-propell 98.1 0.003 1E-07 51.8 22.2 193 2-211 43-262 (355)
289 2p9w_A MAL S 1 allergenic prot 98.0 0.0024 8.3E-08 51.9 20.9 162 34-212 17-215 (334)
290 1zgk_A Kelch-like ECH-associat 98.0 0.0034 1.2E-07 51.2 25.2 220 9-258 39-289 (308)
291 4asc_A Kelch repeat and BTB do 98.0 0.0032 1.1E-07 51.6 22.3 180 99-298 44-253 (315)
292 1ijq_A LDL receptor, low-densi 98.0 0.0037 1.3E-07 51.3 28.7 220 9-258 10-240 (316)
293 4hw6_A Hypothetical protein, I 98.0 0.0016 5.5E-08 56.0 20.0 199 90-305 139-371 (433)
294 3m0c_C LDL receptor, low-densi 97.9 0.013 4.6E-07 54.3 29.9 223 9-258 404-634 (791)
295 3kya_A Putative phosphatase; s 97.9 0.0096 3.3E-07 51.6 25.2 247 34-308 143-475 (496)
296 3amr_A 3-phytase; beta-propell 97.9 0.004 1.4E-07 51.1 19.5 201 100-307 39-262 (355)
297 2xbg_A YCF48-like protein; pho 97.9 0.0083 2.8E-07 49.5 28.0 237 29-305 79-319 (327)
298 3tc9_A Hypothetical hydrolase; 97.8 0.0051 1.7E-07 52.9 20.8 156 91-256 138-301 (430)
299 4asc_A Kelch repeat and BTB do 97.8 0.0091 3.1E-07 48.9 24.4 225 2-258 8-279 (315)
300 2p9w_A MAL S 1 allergenic prot 97.8 0.0083 2.8E-07 48.8 20.1 164 91-257 14-216 (334)
301 1n7d_A LDL receptor, low-densi 97.7 0.00045 1.5E-08 63.3 13.3 222 9-258 386-616 (699)
302 2woz_A Kelch repeat and BTB do 97.7 0.013 4.4E-07 48.0 22.5 180 99-298 55-263 (318)
303 3ei3_A DNA damage-binding prot 97.7 0.042 1.4E-06 53.3 28.8 243 10-283 493-748 (1158)
304 3p5b_L Low density lipoprotein 97.7 0.018 6.1E-07 48.9 29.8 203 89-308 111-320 (400)
305 1n7d_A LDL receptor, low-densi 97.6 0.0019 6.6E-08 59.2 16.1 198 91-307 407-613 (699)
306 3sov_A LRP-6, low-density lipo 97.6 0.022 7.6E-07 46.6 24.9 198 91-308 36-238 (318)
307 2woz_A Kelch repeat and BTB do 97.6 0.023 7.8E-07 46.5 25.3 149 100-258 109-289 (318)
308 3m0c_C LDL receptor, low-densi 97.5 0.059 2E-06 50.0 29.2 201 89-308 423-632 (791)
309 2uvk_A YJHT; unknown function, 97.5 0.03 1E-06 46.6 21.4 183 100-299 65-327 (357)
310 2xbg_A YCF48-like protein; pho 97.5 0.029 9.8E-07 46.2 25.5 232 29-301 35-272 (327)
311 3kya_A Putative phosphatase; s 97.5 0.024 8.3E-07 49.2 19.6 163 91-255 140-340 (496)
312 3ei3_A DNA damage-binding prot 97.4 0.097 3.3E-06 50.9 27.1 179 112-309 808-1000(1158)
313 2xzh_A Clathrin heavy chain 1; 97.3 0.043 1.5E-06 44.4 25.3 226 8-257 86-333 (365)
314 3s94_A LRP-6, low-density lipo 97.3 0.086 3E-06 47.6 25.6 221 7-258 16-245 (619)
315 3pbp_A Nucleoporin NUP82; beta 97.3 0.047 1.6E-06 46.0 18.5 115 91-208 67-208 (452)
316 1tl2_A L10, protein (tachylect 97.1 0.013 4.4E-07 44.5 11.6 105 91-206 42-157 (236)
317 3sre_A PON1, serum paraoxonase 97.0 0.12 3.9E-06 42.9 22.2 192 91-298 51-287 (355)
318 1bpo_A Protein (clathrin); cla 97.0 0.13 4.5E-06 43.5 27.6 226 8-257 85-332 (494)
319 3sre_A PON1, serum paraoxonase 96.9 0.1 3.4E-06 43.3 17.1 160 136-308 52-252 (355)
320 2zwa_A Leucine carboxyl methyl 96.9 0.18 6.1E-06 46.3 20.1 113 99-213 499-636 (695)
321 2xzh_A Clathrin heavy chain 1; 96.9 0.13 4.6E-06 41.6 29.4 233 36-308 75-332 (365)
322 3s94_A LRP-6, low-density lipo 96.8 0.27 9.1E-06 44.4 25.8 200 90-309 40-244 (619)
323 4a0p_A LRP6, LRP-6, low-densit 96.7 0.34 1.2E-05 43.8 30.6 218 7-258 13-239 (628)
324 2be1_A Serine/threonine-protei 96.7 0.048 1.7E-06 44.8 13.3 204 39-261 10-236 (339)
325 4a0p_A LRP6, LRP-6, low-densit 96.6 0.4 1.4E-05 43.3 25.5 196 90-308 37-237 (628)
326 2be1_A Serine/threonine-protei 96.6 0.23 7.9E-06 40.8 16.6 113 1-122 12-132 (339)
327 3ott_A Two-component system se 96.6 0.48 1.6E-05 44.0 27.4 239 30-308 373-626 (758)
328 3pbp_A Nucleoporin NUP82; beta 96.5 0.28 9.6E-06 41.4 16.8 149 8-160 40-208 (452)
329 2zwa_A Leucine carboxyl methyl 96.4 0.53 1.8E-05 43.2 19.6 153 99-258 396-579 (695)
330 1bpo_A Protein (clathrin); cla 96.3 0.4 1.4E-05 40.6 28.7 232 37-308 75-331 (494)
331 3a9g_A Putative uncharacterize 96.3 0.41 1.4E-05 39.8 20.9 106 90-200 29-153 (354)
332 1xi4_A Clathrin heavy chain; a 96.1 0.83 2.8E-05 45.0 19.5 225 8-256 85-331 (1630)
333 2ism_A Putative oxidoreductase 96.1 0.5 1.7E-05 39.2 23.0 105 91-200 32-153 (352)
334 1xi4_A Clathrin heavy chain; a 96.0 1.3 4.5E-05 43.7 21.9 192 38-259 76-292 (1630)
335 3qhy_B Beta-lactamase inhibito 95.8 0.56 1.9E-05 37.5 26.7 223 30-308 24-246 (282)
336 1cru_A Protein (soluble quinop 95.5 0.89 3.1E-05 39.2 16.2 110 90-201 27-163 (454)
337 3ott_A Two-component system se 95.4 1.7 5.8E-05 40.3 28.1 222 2-253 76-304 (758)
338 2ism_A Putative oxidoreductase 95.0 1.3 4.5E-05 36.7 24.7 104 31-152 32-153 (352)
339 3a9g_A Putative uncharacterize 94.6 1.7 5.7E-05 36.1 27.5 56 235-296 275-330 (354)
340 1tl2_A L10, protein (tachylect 94.6 1.1 3.9E-05 34.1 15.1 189 100-307 3-207 (236)
341 1cru_A Protein (soluble quinop 94.5 1.4 4.9E-05 37.9 14.6 109 134-244 27-162 (454)
342 3kci_A Probable E3 ubiquitin-p 94.4 2 6.8E-05 36.1 24.3 210 33-256 110-345 (389)
343 3kci_A Probable E3 ubiquitin-p 94.2 2.2 7.7E-05 35.8 31.2 286 3-308 14-345 (389)
344 3qhy_B Beta-lactamase inhibito 92.9 3 0.0001 33.3 26.2 207 8-257 41-247 (282)
345 3b7f_A Glycosyl hydrolase, BNR 91.9 5 0.00017 33.6 25.7 115 90-208 115-258 (394)
346 3s25_A Hypothetical 7-bladed b 91.1 5.1 0.00018 32.3 23.1 141 95-257 58-217 (302)
347 3das_A Putative oxidoreductase 90.7 6.2 0.00021 32.5 28.0 248 30-299 32-330 (347)
348 3mvd_K Regulator of chromosome 89.9 8.4 0.00029 32.7 35.1 254 30-308 75-374 (423)
349 2g8s_A Glucose/sorbosone dehyd 88.6 9.3 0.00032 31.5 22.3 108 91-200 19-148 (353)
350 4gq2_M Nucleoporin NUP120; bet 87.4 21 0.00071 34.2 19.4 34 89-122 235-268 (950)
351 2g8s_A Glucose/sorbosone dehyd 86.5 13 0.00043 30.7 29.2 63 236-307 288-351 (353)
352 3sbq_A Nitrous-oxide reductase 85.9 18 0.00062 32.0 15.0 75 135-212 324-408 (638)
353 4d9s_A UVB-resistance protein 85.8 15 0.00051 31.0 34.3 281 4-308 30-357 (406)
354 3f7f_A Nucleoporin NUP120; nuc 85.3 4.3 0.00015 36.9 8.9 37 31-67 223-259 (729)
355 3q6k_A 43.2 kDa salivary prote 84.6 16 0.00056 30.4 22.4 151 10-164 124-306 (381)
356 3das_A Putative oxidoreductase 82.9 18 0.00063 29.7 25.4 110 89-200 31-158 (347)
357 2wg3_C Hedgehog-interacting pr 82.5 23 0.00079 30.5 13.7 110 91-202 15-159 (463)
358 4gq2_M Nucleoporin NUP120; bet 80.3 23 0.00078 33.9 12.3 33 135-167 237-269 (950)
359 4d9s_A UVB-resistance protein 79.0 28 0.00096 29.3 31.5 258 27-308 13-305 (406)
360 4fhn_B Nucleoporin NUP120; pro 78.6 7.3 0.00025 38.1 8.6 33 90-122 238-270 (1139)
361 3f7f_A Nucleoporin NUP120; nuc 75.9 14 0.00048 33.7 8.8 31 90-122 222-252 (729)
362 3s25_A Hypothetical 7-bladed b 75.4 30 0.001 27.7 27.9 138 96-257 110-256 (302)
363 3of7_A Regulator of chromosome 75.3 39 0.0013 29.1 27.7 260 30-308 67-405 (473)
364 1a12_A RCC1, regulator of chro 73.5 40 0.0014 28.4 32.5 271 6-308 24-365 (413)
365 3uc1_A DNA gyrase subunit A; D 67.2 49 0.0017 26.9 20.2 157 39-212 109-279 (327)
366 3mvd_K Regulator of chromosome 66.5 58 0.002 27.4 28.4 236 4-256 89-374 (423)
367 1sqj_A OXG-RCBH, oligoxylogluc 65.9 87 0.003 29.2 20.7 114 89-203 14-143 (789)
368 3b7f_A Glycosyl hydrolase, BNR 64.3 61 0.0021 26.9 22.8 70 90-159 55-142 (394)
369 1suu_A DNA gyrase subunit A; t 59.7 67 0.0023 25.8 21.9 209 99-314 6-237 (312)
370 3no0_A DNA gyrase subunit A; D 58.3 66 0.0023 25.3 23.0 207 90-310 24-248 (276)
371 3no0_A DNA gyrase subunit A; D 57.0 70 0.0024 25.2 20.1 165 29-212 67-246 (276)
372 3zwu_A Alkaline phosphatase PH 53.3 41 0.0014 30.0 7.3 60 91-151 477-548 (592)
373 4fhn_B Nucleoporin NUP120; pro 47.5 59 0.002 31.9 8.1 25 235-259 247-271 (1139)
374 3sbq_A Nitrous-oxide reductase 46.9 1.6E+02 0.0054 26.3 29.4 139 180-320 323-501 (638)
375 3l6v_A GYRA, DNA gyrase subuni 45.7 1.3E+02 0.0044 25.0 20.3 215 95-315 1-272 (370)
376 2cn3_A Xyloglucanase, beta-1,4 44.8 1.9E+02 0.0065 26.6 19.8 110 91-201 24-152 (737)
377 4a9v_A PHOX; hydrolase, beta-p 41.0 1.3E+02 0.0043 26.9 8.2 61 90-152 476-549 (592)
378 3q6k_A 43.2 kDa salivary prote 40.5 1.6E+02 0.0055 24.5 18.1 147 50-212 124-306 (381)
379 1sqj_A OXG-RCBH, oligoxylogluc 37.6 2.6E+02 0.0088 26.1 14.9 147 133-284 14-181 (789)
380 4hvt_A Ritya.17583.B, post-pro 33.2 2.9E+02 0.0099 25.4 17.7 199 92-307 131-380 (711)
381 1olz_A Semaphorin 4D; developm 32.9 1.8E+02 0.006 26.5 8.2 61 238-303 416-477 (663)
382 3al9_A Plexin-A2; beta-propell 31.0 1.1E+02 0.0038 26.9 6.5 69 91-159 401-476 (539)
383 3of7_A Regulator of chromosome 30.1 2.6E+02 0.009 23.9 27.7 161 134-308 148-341 (473)
384 1q47_A Semaphorin 3A; beta pro 27.4 1.7E+02 0.0057 25.5 6.9 69 91-159 405-487 (495)
385 3nvq_A Semaphorin-7A; beta-pro 27.3 2E+02 0.0069 25.7 7.4 60 238-303 381-444 (590)
386 1q47_A Semaphorin 3A; beta pro 27.2 1.8E+02 0.0061 25.3 7.0 60 238-303 422-487 (495)
387 3zwu_A Alkaline phosphatase PH 24.8 2.3E+02 0.0078 25.4 7.3 48 231-282 481-541 (592)
388 3nvq_A Semaphorin-7A; beta-pro 24.8 1.7E+02 0.006 26.1 6.5 69 91-159 363-444 (590)
389 3al9_A Plexin-A2; beta-propell 24.0 2.8E+02 0.0094 24.5 7.7 70 136-207 402-476 (539)
390 3uc1_A DNA gyrase subunit A; D 22.2 3.1E+02 0.011 22.1 26.1 247 39-310 3-281 (327)
391 3a0f_A Xyloglucanase; beta-pro 21.6 4.8E+02 0.017 24.1 20.0 115 88-203 19-155 (763)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-47 Score=330.33 Aligned_cols=267 Identities=27% Similarity=0.435 Sum_probs=234.0
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++|+.||+|+|||+.+++....+.+|...|.++.+ ++++|++|+.||+|++||+.+.+.+.
T Consensus 122 ~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~--------------- 186 (410)
T 1vyh_C 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIR--------------- 186 (410)
T ss_dssp EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEE---------------
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE---------------
Confidence 4899999999999999999999999999999999987 47799999999999999998765442
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
.+.+|...|.+++|+|++++|++|+.|++|++||+.++. ++..+.+|...|.++.++|++.+|++|+.|+.|+
T Consensus 187 -----~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 187 -----TMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY--CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp -----CCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred -----EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc--EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 346899999999999999999999999999999999988 7788889999999999999999999999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecC------------------CCcEEEEeecCCcEEEEEccCCcCCcccc
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFF------------------DNYFLYSGSSDGSINFWEKDKMSGGFNHG 220 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 220 (358)
+||++++. ....+..|...|.+++|+|.. .+.+|++|+.|+.|++||++++ ...
T Consensus 260 vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~----~~~ 331 (410)
T 1vyh_C 260 VWVVATKE----CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----MCL 331 (410)
T ss_dssp EEETTTCC----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT----EEE
T ss_pred EEECCCCc----eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC----ceE
Confidence 99996543 344567789999999999821 1678999999999999999873 334
Q ss_pred ceeecccceeEE--EeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 221 GFLQGHCFAVLC--LVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 221 ~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
..+.+|...+.+ +++++++|++|+.||.|++||+.++ +++..+.+|...|++++|+|+ +.+|++|+.|
T Consensus 332 ~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~----~~~~~~~~h~~~v~~l~~~~~------~~~l~sgs~D 401 (410)
T 1vyh_C 332 MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK----RCMKTLNAHEHFVTSLDFHKT------APYVVTGSVD 401 (410)
T ss_dssp EEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS----CCCEEEECCSSCEEEEEECSS------SSCEEEEETT
T ss_pred EEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----ceEEEEcCCCCcEEEEEEcCC------CCEEEEEeCC
Confidence 456778777654 5567899999999999999999887 567788899999999999999 7899999999
Q ss_pred CcEEEEEee
Q 038537 299 QTFKVWRVK 307 (358)
Q Consensus 299 g~v~iw~~~ 307 (358)
|+|++|+++
T Consensus 402 ~~i~vW~~r 410 (410)
T 1vyh_C 402 QTVKVWECR 410 (410)
T ss_dssp SEEEEEC--
T ss_pred CcEEEEeCC
Confidence 999999864
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.3e-46 Score=314.29 Aligned_cols=265 Identities=21% Similarity=0.292 Sum_probs=231.4
Q ss_pred CEEeeeCCCcEEEEeCCCcee--eeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVE--RGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~--~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
+|+||+.||+|+||++.+.+. ...+.+|...|.++.+ ++.++++++.|++|++||+.+++.+.
T Consensus 50 ~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~------------- 116 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIK------------- 116 (321)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-------------
T ss_pred EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE-------------
Confidence 489999999999999876653 4568899999999987 46799999999999999998876543
Q ss_pred eeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
.+..|...+.+++|+|++++|++|+.||.|++|++++++ ....+..|...|.+++|+|++++|++++.||.
T Consensus 117 -------~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~--~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~ 187 (321)
T 3ow8_A 117 -------SIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGK--KEYSLDTRGKFILSIAYSPDGKYLASGAIDGI 187 (321)
T ss_dssp -------EEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCS--EEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred -------EEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCc--eeEEecCCCceEEEEEECCCCCEEEEEcCCCe
Confidence 224677789999999999999999999999999999887 66677788899999999999999999999999
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEE--Ee
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LV 234 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~ 234 (358)
|++||++++ +....+..|...|.+++|+| ++.+|++|+.|+.|++||++.. .....+.+|...+.+ ++
T Consensus 188 i~iwd~~~~----~~~~~~~~h~~~v~~l~~sp--d~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~s 257 (321)
T 3ow8_A 188 INIFDIATG----KLLHTLEGHAMPIRSLTFSP--DSQLLVTASDDGYIKIYDVQHA----NLAGTLSGHASWVLNVAFC 257 (321)
T ss_dssp EEEEETTTT----EEEEEECCCSSCCCEEEECT--TSCEEEEECTTSCEEEEETTTC----CEEEEECCCSSCEEEEEEC
T ss_pred EEEEECCCC----cEEEEEcccCCceeEEEEcC--CCCEEEEEcCCCeEEEEECCCc----ceeEEEcCCCCceEEEEEC
Confidence 999999654 34556678999999999998 9999999999999999999873 334456778877755 45
Q ss_pred eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 235 AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 235 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
|++.+|++++.|+.|++||+.++ +++..+.+|...|.+++|+|+ +.+|++++.||.|++||+.
T Consensus 258 p~~~~l~s~s~D~~v~iwd~~~~----~~~~~~~~h~~~v~~v~~s~~------g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 258 PDDTHFVSSSSDKSVKVWDVGTR----TCVHTFFDHQDQVWGVKYNGN------GSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TTSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTT------SSEEEEEETTCCEEEEECC
T ss_pred CCCCEEEEEeCCCcEEEEeCCCC----EEEEEEcCCCCcEEEEEECCC------CCEEEEEeCCCeEEEEeCC
Confidence 67899999999999999999998 678888999999999999999 8899999999999999974
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.9e-46 Score=312.87 Aligned_cols=268 Identities=19% Similarity=0.327 Sum_probs=227.9
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++|+.||+|++||..+++.+..+..|...|.++.+ ++++|++|+.|+.|++|++.+.......
T Consensus 69 ~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~------------- 135 (340)
T 1got_B 69 LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRV------------- 135 (340)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEE-------------
T ss_pred EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCccee-------------
Confidence 4899999999999999999999999999999998877 5789999999999999999765321100
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
...+.+|...|.++.|++++. +++++.|+.|++||+.+++ .+..+.+|...|.+++|+|+++++++|+.|+.|+
T Consensus 136 ---~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~ 209 (340)
T 1got_B 136 ---SRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQ--QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209 (340)
T ss_dssp ---EEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ---EEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCc--EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence 013468999999999998775 8999999999999999887 7778889999999999999999999999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccc--ceeEEEeee
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC--FAVLCLVAI 236 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 236 (358)
+||++++. ....+..|...|.+++|+| ++.+|++|+.||.|++||++......... ...+. ....+++|+
T Consensus 210 ~wd~~~~~----~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~~~~v~~~~~s~~ 281 (340)
T 1got_B 210 LWDVREGM----CRQTFTGHESDINAICFFP--NGNAFATGSDDATCRLFDLRADQELMTYS--HDNIICGITSVSFSKS 281 (340)
T ss_dssp EEETTTCS----EEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEEC--CTTCCSCEEEEEECTT
T ss_pred EEECCCCe----eEEEEcCCcCCEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCcEEEEEc--cCCcccceEEEEECCC
Confidence 99996543 3455677899999999998 99999999999999999998743221111 11222 234567788
Q ss_pred CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
+++|++|+.||.|++||+.++ +.+..+.+|.++|++++|+|+ +.+|+||+.||.|++||
T Consensus 282 g~~l~~g~~d~~i~vwd~~~~----~~~~~~~~h~~~v~~~~~s~d------g~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 282 GRLLLAGYDDFNCNVWDALKA----DRAGVLAGHDNRVSCLGVTDD------GMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECTT------SSCEEEEETTSCEEEEC
T ss_pred CCEEEEECCCCeEEEEEcccC----cEeeEeecCCCcEEEEEEcCC------CCEEEEEcCCccEEecC
Confidence 999999999999999999987 567788999999999999999 88999999999999996
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.9e-45 Score=308.36 Aligned_cols=273 Identities=17% Similarity=0.215 Sum_probs=215.2
Q ss_pred EEeeeCCCcEEEEeCC-----------CceeeeeeeecccceEEEEec-CCEEEEEeCCceEEEEecccccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQP-----------DCVERGFIKARHGEVRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTT 69 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~-----------~~~~~~~~~~h~~~v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 69 (358)
|++++ |+++|+||.. ..........|...|.+++|. ++.|++|+.||+|+|||+.+++.......
T Consensus 45 l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~-- 121 (344)
T 4gqb_B 45 LLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKF-- 121 (344)
T ss_dssp EEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEE--
T ss_pred EEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeec--
Confidence 45554 7788888732 111223334567789999884 56899999999999999998765433221
Q ss_pred cCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCC-CEE
Q 038537 70 LPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD-GFV 148 (358)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 148 (358)
.+.+|.+.|++++|+|++++|++|+.|++|++||+.+++ .+..+.+|...|.+++|+|++ .+|
T Consensus 122 --------------~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~--~~~~~~~h~~~V~~~~~~~~~~~~l 185 (344)
T 4gqb_B 122 --------------CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV--VLSSYRAHAAQVTCVAASPHKDSVF 185 (344)
T ss_dssp --------------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECSSCTTEE
T ss_pred --------------cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc--EEEEEcCcCCceEEEEecCCCCCce
Confidence 235899999999999999999999999999999999988 788899999999999999987 478
Q ss_pred EEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccc
Q 038537 149 FTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCF 228 (358)
Q Consensus 149 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 228 (358)
++++.|+.|++||+++++....+. ...+...+.+++|+| .++.+|++|+.||.|++||+++. .....+.+|..
T Consensus 186 ~s~s~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~p-~~~~~l~sg~~dg~v~~wd~~~~----~~~~~~~~h~~ 258 (344)
T 4gqb_B 186 LSCSEDNRILLWDTRCPKPASQIG--CSAPGYLPTSLAWHP-QQSEVFVFGDENGTVSLVDTKST----SCVLSSAVHSQ 258 (344)
T ss_dssp EEEETTSCEEEEETTSSSCEEECC------CCCEEEEEECS-SCTTEEEEEETTSEEEEEESCC------CCEEEECCSS
T ss_pred eeeccccccccccccccceeeeee--cceeeccceeeeecC-CCCcceEEeccCCcEEEEECCCC----cEEEEEcCCCC
Confidence 999999999999998765443332 234556789999998 35678999999999999999884 34455778888
Q ss_pred eeEEEe--eeC-CEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 229 AVLCLV--AIE-KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 229 ~~~~~~--~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
.|.++. |++ ++|++|+.|+.|++||+.+++ +..+.+|.+.|++++|+|++ ..+|+|+|.||+|++|+
T Consensus 259 ~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-----~~~~~~H~~~V~~v~~sp~~-----~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 259 CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-----LFRSQAHRDFVRDATWSPLN-----HSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp CEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-----EEEECCCSSCEEEEEECSSS-----TTEEEEEETTSCEEEEE
T ss_pred CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-----EEEEcCCCCCEEEEEEeCCC-----CeEEEEEcCCCeEEEEE
Confidence 876654 565 689999999999999999873 34568999999999999983 24788999999999999
Q ss_pred eeeCC
Q 038537 306 VKVMP 310 (358)
Q Consensus 306 ~~~~~ 310 (358)
+...+
T Consensus 329 v~~~~ 333 (344)
T 4gqb_B 329 VPTEP 333 (344)
T ss_dssp CCC--
T ss_pred CCCCC
Confidence 98643
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-44 Score=306.55 Aligned_cols=273 Identities=20% Similarity=0.259 Sum_probs=228.5
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|+||+.||+|++||..+++....+..|...|.++.+ ++.++++|+.|+.+++|++.........
T Consensus 78 ~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~------------- 144 (354)
T 2pbi_B 78 RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMA------------- 144 (354)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSG-------------
T ss_pred EEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccccc-------------
Confidence 4899999999999999999999999999999998876 6789999999999999998754321110
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC--CCCEEEEEeCCCc
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ--DDGFVFTCSSDGS 156 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 156 (358)
.....+.+|...|.+++|+|++..|++++.|++|++||+++++ .+..+.+|...|.+++|+| ++++|++|+.||.
T Consensus 145 -~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~ 221 (354)
T 2pbi_B 145 -AKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ--LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK 221 (354)
T ss_dssp -GGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred -ccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe--EEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence 0112346899999999999999999999999999999999988 7788889999999999987 5689999999999
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeee
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI 236 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (358)
|++||++++. ....+..|...|.+++|+| ++.+|++|+.|+.|++||++....................+++++
T Consensus 222 v~~wd~~~~~----~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~ 295 (354)
T 2pbi_B 222 AMVWDMRSGQ----CVQAFETHESDVNSVRYYP--SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLS 295 (354)
T ss_dssp EEEEETTTCC----EEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred EEEEECCCCc----EEEEecCCCCCeEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCC
Confidence 9999997654 3455677999999999998 899999999999999999987432111110000112334667788
Q ss_pred CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
+++|++|+.|+.|++||+.++ +.+..+.+|.+.|++++|+|+ +.+|++|+.||+|++|+
T Consensus 296 g~~l~~g~~d~~i~vwd~~~~----~~~~~l~~h~~~v~~l~~spd------g~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 296 GRLLFAGYNDYTINVWDVLKG----SRVSILFGHENRVSTLRVSPD------GTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SSEEEEEETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTT------SSCEEEEETTSEEEEEC
T ss_pred CCEEEEEECCCcEEEEECCCC----ceEEEEECCCCcEEEEEECCC------CCEEEEEcCCCCEEecC
Confidence 999999999999999999888 567788899999999999999 88999999999999995
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.9e-44 Score=299.32 Aligned_cols=271 Identities=24% Similarity=0.318 Sum_probs=228.6
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++|+.||+|++||+.+++.+..+..|..+|.++.+ ++++|++|+.|++|++||+.+++.+.
T Consensus 27 ~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~--------------- 91 (304)
T 2ynn_A 27 WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV--------------- 91 (304)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE---------------
T ss_pred EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEE---------------
Confidence 4899999999999999999999999999999998866 68899999999999999998876543
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSV 157 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 157 (358)
.+.+|.+.|.+++|+|++++|++|+.|++|++||++++. .....+.+|...|.+++|+| ++..|++|+.|+.|
T Consensus 92 -----~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v 165 (304)
T 2ynn_A 92 -----DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (304)
T ss_dssp -----EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT-EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred -----EEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc-chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeE
Confidence 346899999999999999999999999999999998764 14566788999999999999 67899999999999
Q ss_pred EEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeE--EEee
Q 038537 158 KIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL--CLVA 235 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~ 235 (358)
++||++.......+ ...+...+..+.+.|.+++.+|++|+.|+.|++||+++. .....+.+|...+. +++|
T Consensus 166 ~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~----~~~~~~~~h~~~v~~~~~~p 238 (304)
T 2ynn_A 166 KVWSLGQSTPNFTL---TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK----SCVATLEGHMSNVSFAVFHP 238 (304)
T ss_dssp EEEETTCSSCSEEE---ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECS
T ss_pred EEEECCCCCcccee---ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC----ccceeeCCCCCCEEEEEECC
Confidence 99999755433222 234567899999998778899999999999999999873 34455778877775 4567
Q ss_pred eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 236 IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 236 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
++++|++|+.||.|++||+.++ +++..+..|...+.+++|+|++. ..++++|+.| .+.+|++..
T Consensus 239 ~~~~l~s~s~Dg~i~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 239 TLPIIISGSEDGTLKIWNSSTY----KVEKTLNVGLERSWCIATHPTGR----KNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp SSSEEEEEETTSCEEEEETTTC----CEEEEECCSSSSEEEEEECTTCG----GGCEEEEETT-EEEEEECC-
T ss_pred CCCEEEEEcCCCeEEEEECCCC----ceeeeccCCCccEEEEEECCCCC----ceEEEEecCC-ceEEEEecc
Confidence 7899999999999999999998 66788889999999999999843 2367777765 577888764
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.9e-43 Score=293.29 Aligned_cols=250 Identities=22% Similarity=0.328 Sum_probs=213.5
Q ss_pred eeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEE
Q 038537 20 VERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAF 97 (358)
Q Consensus 20 ~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 97 (358)
+....+.+|.+.|.++.+ ++.+|++|+.||+|++||+.++..+. .+..|..+|.+++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~--------------------~~~~~~~~v~~~~~ 63 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--------------------SIQVTETPVRAGKF 63 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------------EEECCSSCEEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE--------------------EeeccCCcEEEEEE
Confidence 456788999999999987 57899999999999999998776542 33678899999999
Q ss_pred eCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecc
Q 038537 98 YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKF 177 (358)
Q Consensus 98 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 177 (358)
+|++++|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++|+.|+.|++||++++. .....+.+
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~---~~~~~~~~ 138 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGE--KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---ALEQTFEG 138 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT---EEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCc--EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc---chhhhhcc
Confidence 9999999999999999999999988 778889999999999999999999999999999999996542 34456678
Q ss_pred cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEee--eCCEEEEeeCCCeEEEEE
Q 038537 178 QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVA--IEKLIFSGSEDTTIRVWR 253 (358)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~l~~~~~dg~i~iwd 253 (358)
|...|.+++|+| .++.+|++|+.|+.|++||++........ ..++...+ .++.+ ++.+|++|+.|+.|++||
T Consensus 139 h~~~v~~v~~~p-~~~~~l~sgs~D~~v~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd 214 (304)
T 2ynn_A 139 HEHFVMCVAFNP-KDPSTFASGCLDRTVKVWSLGQSTPNFTL---TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214 (304)
T ss_dssp CCSCEEEEEECT-TCTTEEEEEETTSEEEEEETTCSSCSEEE---ECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEE
T ss_pred cCCcEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCcccee---ccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEe
Confidence 999999999997 35689999999999999999874332221 22343444 44444 568999999999999999
Q ss_pred cCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 254 RAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
++++ +++..+.+|...|++++|+|+ +.+|++|+.||+|++||+++
T Consensus 215 ~~~~----~~~~~~~~h~~~v~~~~~~p~------~~~l~s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 215 YQTK----SCVATLEGHMSNVSFAVFHPT------LPIIISGSEDGTLKIWNSST 259 (304)
T ss_dssp TTTT----EEEEEEECCSSCEEEEEECSS------SSEEEEEETTSCEEEEETTT
T ss_pred CCCC----ccceeeCCCCCCEEEEEECCC------CCEEEEEcCCCeEEEEECCC
Confidence 9998 678889999999999999999 78999999999999999874
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-44 Score=308.50 Aligned_cols=282 Identities=18% Similarity=0.279 Sum_probs=227.8
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++|+.||+|+|||+.+++....+..|...|.++++ ++++|++|+.|+.+++|++.........
T Consensus 80 ~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~------------- 146 (380)
T 3iz6_a 80 WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGN------------- 146 (380)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCS-------------
T ss_pred EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCC-------------
Confidence 5899999999999999999999999999999997766 6789999999999999999754321100
Q ss_pred ecCCCccccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCcccccccc-----cccccCeEEEEEcC-CCCEEEEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCVDSF-----VAHESNVNAIVVNQ-DDGFVFTC 151 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~ 151 (358)
......+.+|.+.|.++.|+|++ ..|++|+.|++|++||+.+++ .+..+ .+|...|.+++|++ ++++|++|
T Consensus 147 ~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 224 (380)
T 3iz6_a 147 MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ--RISIFGSEFPSGHTADVLSLSINSLNANMFISG 224 (380)
T ss_dssp STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC--EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEE
T ss_pred ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc--EEEEeecccCCCCccCeEEEEeecCCCCEEEEE
Confidence 11123457999999999999964 579999999999999999887 44433 57899999999987 88999999
Q ss_pred eCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccccee---ecc--
Q 038537 152 SSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFL---QGH-- 226 (358)
Q Consensus 152 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~~-- 226 (358)
+.|+.|++||++... .....+.+|...|.+++|+| ++.+|++|+.||.|++||++++.......... ..+
T Consensus 225 s~D~~v~~wd~~~~~---~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 299 (380)
T 3iz6_a 225 SCDTTVRLWDLRITS---RAVRTYHGHEGDINSVKFFP--DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299 (380)
T ss_dssp ETTSCEEEEETTTTC---CCCEEECCCSSCCCEEEECT--TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSC
T ss_pred ECCCeEEEEECCCCC---cceEEECCcCCCeEEEEEec--CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccC
Confidence 999999999996332 23455677999999999998 99999999999999999998743222111100 011
Q ss_pred cceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 227 CFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 227 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
.....++++++++|++|+.||.|++||+..++..........+|.+.|++++|+|+ +.+|++|+.||+|++|++
T Consensus 300 ~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~d------g~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD------GSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp SCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSS------SSEEEEECTTSCEEEEEC
T ss_pred ceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCC------CCEEEEeeCCCCEEEEec
Confidence 13457788999999999999999999999885432222223689999999999999 889999999999999998
Q ss_pred ee
Q 038537 307 KV 308 (358)
Q Consensus 307 ~~ 308 (358)
..
T Consensus 374 ~~ 375 (380)
T 3iz6_a 374 SG 375 (380)
T ss_dssp CS
T ss_pred CC
Confidence 74
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-43 Score=297.65 Aligned_cols=282 Identities=22% Similarity=0.290 Sum_probs=222.5
Q ss_pred CEEeeeCCCcEEEEeCCCceeee---eeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCce
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERG---FIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~---~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
+||+|+.||+|+|||+.++.... ...+|...|.++++ ++++|++|+.|++|++|++.......
T Consensus 30 ~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~------------ 97 (345)
T 3fm0_A 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC------------ 97 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE------------
T ss_pred EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE------------
Confidence 58999999999999998776432 23689999999987 57899999999999999987653211
Q ss_pred eeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCc-ccccccccccccCeEEEEEcCCCCEEEEEeCC
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR-CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 154 (358)
...+.+|...|.+++|+|++++|++|+.|+.|++||+.+.. ...+..+..|...|.+++|+|++++|++++.|
T Consensus 98 ------~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d 171 (345)
T 3fm0_A 98 ------VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171 (345)
T ss_dssp ------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT
T ss_pred ------EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC
Confidence 01347899999999999999999999999999999998754 22456677899999999999999999999999
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccc-----------ccee
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH-----------GGFL 223 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------~~~~ 223 (358)
+.|++||++.+. ......+.+|...|.+++|+| ++.+|++++.|+.|++||.......... ...+
T Consensus 172 ~~i~~w~~~~~~--~~~~~~~~~h~~~v~~l~~sp--~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T 3fm0_A 172 DTVKLYREEEDD--WVCCATLEGHESTVWSLAFDP--SGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247 (345)
T ss_dssp SCEEEEEEETTE--EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred CcEEEEEecCCC--EEEEEEecCCCCceEEEEECC--CCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence 999999986442 223456678999999999998 9999999999999999997543221110 1112
Q ss_pred ec-ccceeEEE--eeeCCEEEEeeCCCeEEEEEcCCCceeee-----eeeeecCcccceEEEEeecccceeeeC-eEEEE
Q 038537 224 QG-HCFAVLCL--VAIEKLIFSGSEDTTIRVWRRAEGGCYHE-----CLAVLDGHRGPVRCLAASLEMEKVVMG-FLVYS 294 (358)
Q Consensus 224 ~~-~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~~~~~-~~l~s 294 (358)
.+ |...+.++ ++++..|++++.|+.|++|+......... ......+|...|++++|+|+ + .+|+|
T Consensus 248 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~------~~~~laS 321 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPK------EPGLLAS 321 (345)
T ss_dssp CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSS------STTEEEE
T ss_pred cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCC------CceEEEE
Confidence 22 55556544 56789999999999999999876532111 12334689999999999998 4 59999
Q ss_pred ccCCCcEEEEEeeeCC
Q 038537 295 SSLDQTFKVWRVKVMP 310 (358)
Q Consensus 295 ~~~dg~v~iw~~~~~~ 310 (358)
|+.||.|++|++....
T Consensus 322 ~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 322 CSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EETTSCEEEEEECC--
T ss_pred cCCCCcEEEEEecCCC
Confidence 9999999999998643
No 10
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=5e-43 Score=292.13 Aligned_cols=266 Identities=23% Similarity=0.428 Sum_probs=226.6
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++|+.||.|++|+..+++....+.+|...|.++.+ ++++|++|+.||.|++||+.+++.+.
T Consensus 37 ~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--------------- 101 (312)
T 4ery_A 37 WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK--------------- 101 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---------------
T ss_pred EEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEE---------------
Confidence 4899999999999999999999999999999999987 57899999999999999998776542
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
.+.+|...|.+++|+|++++|++|+.|+.|++||+++++ .+..+..|..+|.+++|+|+++++++++.||.|+
T Consensus 102 -----~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 174 (312)
T 4ery_A 102 -----TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK--CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174 (312)
T ss_dssp -----EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred -----EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE--EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEE
Confidence 336799999999999999999999999999999999887 6778888999999999999999999999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee----EEEe
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV----LCLV 234 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----~~~~ 234 (358)
+||+++++... .....+...+..++|+| ++.+|++++.|+.|++||+++.. ....+.+|.... ..+.
T Consensus 175 ~wd~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 175 IWDTASGQCLK---TLIDDDNPPVSFVKFSP--NGKYILAATLDNTLKLWDYSKGK----CLKTYTGHKNEKYCIFANFS 245 (312)
T ss_dssp EEETTTCCEEE---EECCSSCCCEEEEEECT--TSSEEEEEETTTEEEEEETTTTE----EEEEECSSCCSSSCCCEEEE
T ss_pred EEECCCCceee---EEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCc----EEEEEEecCCceEEEEEEEE
Confidence 99997554322 22334567899999998 99999999999999999998743 222333443221 2233
Q ss_pred -eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEcc--CCCcEEEEEee
Q 038537 235 -AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSS--LDQTFKVWRVK 307 (358)
Q Consensus 235 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~--~dg~v~iw~~~ 307 (358)
+++.+|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|+ +.+|++++ .|+.|++|+.+
T Consensus 246 ~~~~~~l~sg~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~p~------~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 246 VTGGKWIVSGSEDNLVYIWNLQTK----EIVQKLQGHTDVVISTACHPT------ENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CSSSCEEEECCTTSCEEEEETTTC----CEEEEECCCSSCEEEEEECSS------SSEEEEEECTTTCCEEEEECC
T ss_pred eCCCcEEEEECCCCEEEEEECCCc----hhhhhhhccCCcEEEEeecCc------CCceEEEEccCCccEEEecCC
Confidence 46789999999999999999988 667888999999999999999 78999886 69999999864
No 11
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.1e-43 Score=301.05 Aligned_cols=273 Identities=16% Similarity=0.237 Sum_probs=214.4
Q ss_pred CEEeeeC------CCcEEEEeCCCcee----eeeeeecccceEEEEec-CCEEEEEeCCceEEEEecccccccccccccc
Q 038537 1 MVFTGSS------STRIRVWRQPDCVE----RGFIKARHGEVRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTT 69 (358)
Q Consensus 1 ~l~tg~~------dg~v~vw~~~~~~~----~~~~~~h~~~v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 69 (358)
+||+|+. ||.|++|+..++.. .....+|...|.+++|. ++.+++++.||+|+|||+.+++.......
T Consensus 56 ~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~-- 133 (357)
T 4g56_B 56 LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKF-- 133 (357)
T ss_dssp EEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCE--
T ss_pred EEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEee--
Confidence 4788887 78899999877654 34456789999999884 45788899999999999987764432211
Q ss_pred cCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCC-EE
Q 038537 70 LPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDG-FV 148 (358)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l 148 (358)
...+|...|++++|+|++++|++|+.|+.|++||+.+++ .+..+..|...|.+++|+|++. ++
T Consensus 134 --------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~~~ 197 (357)
T 4g56_B 134 --------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA--VLKSYNAHSSEVNCVAACPGKDTIF 197 (357)
T ss_dssp --------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTCSSCE
T ss_pred --------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEccCCCcee
Confidence 225799999999999999999999999999999999888 7788889999999999999875 78
Q ss_pred EEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccc
Q 038537 149 FTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCF 228 (358)
Q Consensus 149 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 228 (358)
++++.||.|++||+++++..... ....+...+.+++|+| .++.+|++|+.|+.|++||+++. .....+.+|..
T Consensus 198 ~s~~~dg~v~~wd~~~~~~~~~~--~~~~~~~~v~~v~~sp-~~~~~la~g~~d~~i~~wd~~~~----~~~~~~~~~~~ 270 (357)
T 4g56_B 198 LSCGEDGRILLWDTRKPKPATRI--DFCASDTIPTSVTWHP-EKDDTFACGDETGNVSLVNIKNP----DSAQTSAVHSQ 270 (357)
T ss_dssp EEEETTSCEEECCTTSSSCBCBC--CCTTCCSCEEEEEECT-TSTTEEEEEESSSCEEEEESSCG----GGCEEECCCSS
T ss_pred eeeccCCceEEEECCCCceeeee--eeccccccccchhhhh-cccceEEEeecccceeEEECCCC----cEeEEEeccce
Confidence 99999999999999766543322 3345677899999998 23678999999999999999884 34445667777
Q ss_pred eeEEEe--eeC-CEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeec-ccceeeeCeEEEEccCCCcEEEE
Q 038537 229 AVLCLV--AIE-KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASL-EMEKVVMGFLVYSSSLDQTFKVW 304 (358)
Q Consensus 229 ~~~~~~--~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~~~~~l~s~~~dg~v~iw 304 (358)
.+.++. |++ ++|++|+.||.|+|||+.++ +++.. .+|.+.|++|+|+| + +.+|+|+|.||+|++|
T Consensus 271 ~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~----~~~~~-~~H~~~V~~vafsP~d------~~~l~s~s~Dg~v~iW 339 (357)
T 4g56_B 271 NITGLAYSYHSSPFLASISEDCTVAVLDADFS----EVFRD-LSHRDFVTGVAWSPLD------HSKFTTVGWDHKVLHH 339 (357)
T ss_dssp CEEEEEECSSSSCCEEEEETTSCEEEECTTSC----EEEEE-CCCSSCEEEEEECSSS------TTEEEEEETTSCEEEE
T ss_pred eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC----cEeEE-CCCCCCEEEEEEeCCC------CCEEEEEcCCCeEEEE
Confidence 776654 555 68999999999999999987 44444 48999999999998 5 6799999999999999
Q ss_pred EeeeC
Q 038537 305 RVKVM 309 (358)
Q Consensus 305 ~~~~~ 309 (358)
++...
T Consensus 340 ~~~~~ 344 (357)
T 4g56_B 340 HLPSE 344 (357)
T ss_dssp ECC--
T ss_pred ECCCC
Confidence 99754
No 12
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-43 Score=294.45 Aligned_cols=287 Identities=17% Similarity=0.228 Sum_probs=213.1
Q ss_pred CEEeeeCCCcEEEEeCCCc--eeeeee-ee-cccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 1 MVFTGSSSTRIRVWRQPDC--VERGFI-KA-RHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~--~~~~~~-~~-h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
+|++|+.||+|++||+.++ .....+ .+ |...|.++++ ++++|++|+.|++|++||+........
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~---------- 95 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTF---------- 95 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------C----------
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccc----------
Confidence 4899999999999999874 444555 34 9999999987 578999999999999999864321000
Q ss_pred eeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCC--cccccccccccccCeEEEEEcCCCCEEEEEe
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDK--RCTCVDSFVAHESNVNAIVVNQDDGFVFTCS 152 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 152 (358)
.......+.+|...|.+++|+|++++|++|+.|++|++||+... ...++..+.+|...|.+++|+|++.+|++++
T Consensus 96 ---~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s 172 (330)
T 2hes_X 96 ---EMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS 172 (330)
T ss_dssp ---CCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred ---cceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEc
Confidence 00011245789999999999999999999999999999999532 2235667788999999999999999999999
Q ss_pred CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCc----cccceeec-cc
Q 038537 153 SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGF----NHGGFLQG-HC 227 (358)
Q Consensus 153 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~~-~~ 227 (358)
.|+.|++||+..+. ......+.+|...|.+++|+|...+.+|++|+.|+.|++||++...... .....+.+ |.
T Consensus 173 ~D~~i~iW~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~ 250 (330)
T 2hes_X 173 YDDTVRIWKDYDDD--WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250 (330)
T ss_dssp TTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS
T ss_pred CCCeEEEEECCCCC--eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc
Confidence 99999999986432 2345567789999999999983337799999999999999987632111 11122223 77
Q ss_pred ceeEEEeee-CCEEEEeeCCCeEEEEEcCCCceeeeee-eeecCccc-ceEEEEeecccceeeeCeEEEEccCCCcEEEE
Q 038537 228 FAVLCLVAI-EKLIFSGSEDTTIRVWRRAEGGCYHECL-AVLDGHRG-PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304 (358)
Q Consensus 228 ~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~h~~-~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw 304 (358)
..+.++.+. +.+|++++.||.|++||..+++. +.. ....+|.. .|++++|+|... +.+|++|+.||.|++|
T Consensus 251 ~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~--~~~~~~~~~h~~~~v~~v~~~~~~~----~~~las~s~Dg~v~~W 324 (330)
T 2hes_X 251 RQVYNVAWGFNGLIASVGADGVLAVYEEVDGEW--KVFAKRALCHGVYEINVVKWLELNG----KTILATGGDDGIVNFW 324 (330)
T ss_dssp SCEEEEEECTTSCEEEEETTSCEEEEEEETTEE--EEEEEESCTTTTSCEEEEEEC---------CCEEEEETTSEEEEE
T ss_pred cceEEEEEcCCCEEEEEeCCCEEEEEEcCCCce--EEEeccccccccceEEEEEEecCCC----ceEEEEecCCCcEEEE
Confidence 777776653 46899999999999999987632 222 33467887 899999999311 6799999999999999
Q ss_pred Eeee
Q 038537 305 RVKV 308 (358)
Q Consensus 305 ~~~~ 308 (358)
|++.
T Consensus 325 ~~~~ 328 (330)
T 2hes_X 325 SLEK 328 (330)
T ss_dssp EC--
T ss_pred Eecc
Confidence 9864
No 13
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.9e-43 Score=294.01 Aligned_cols=270 Identities=14% Similarity=0.302 Sum_probs=216.2
Q ss_pred CEEeeeCCCcEEEEeCCC-------ceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccC
Q 038537 1 MVFTGSSSTRIRVWRQPD-------CVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLP 71 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~-------~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 71 (358)
+|++|+.||+|++||+.+ +.....+.+|...|.++.+ ++.++++|+.|++|++||+.+++...
T Consensus 41 ~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~-------- 112 (343)
T 2xzm_R 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK-------- 112 (343)
T ss_dssp EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE--------
T ss_pred EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE--------
Confidence 489999999999999864 3456778899999999987 57799999999999999998776542
Q ss_pred CCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCC------
Q 038537 72 RRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD------ 145 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~------ 145 (358)
.+.+|...|.+++|+|++++|++|+.|+.|++||+.............|...|.+++|+|++
T Consensus 113 ------------~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 180 (343)
T 2xzm_R 113 ------------RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV 180 (343)
T ss_dssp ------------EEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCC
T ss_pred ------------EEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecccccccccc
Confidence 34689999999999999999999999999999999754322223334788999999999986
Q ss_pred ----CEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccc
Q 038537 146 ----GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGG 221 (358)
Q Consensus 146 ----~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 221 (358)
.++++++.||.|++||.. ......+..|...|.+++|+| ++.+|++|+.||.|++||+........ .
T Consensus 181 ~~~~~~l~s~~~d~~i~iwd~~-----~~~~~~~~~h~~~v~~~~~s~--~g~~l~sgs~dg~v~iwd~~~~~~~~~--~ 251 (343)
T 2xzm_R 181 QPFAPYFASVGWDGRLKVWNTN-----FQIRYTFKAHESNVNHLSISP--NGKYIATGGKDKKLLIWDILNLTYPQR--E 251 (343)
T ss_dssp CSSCCEEEEEETTSEEEEEETT-----TEEEEEEECCSSCEEEEEECT--TSSEEEEEETTCEEEEEESSCCSSCSE--E
T ss_pred CCCCCEEEEEcCCCEEEEEcCC-----CceeEEEcCccccceEEEECC--CCCEEEEEcCCCeEEEEECCCCcccce--e
Confidence 789999999999999942 234456678999999999998 999999999999999999954322111 1
Q ss_pred eeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeee-----------cCcccceEEEEeecccceeeeCe
Q 038537 222 FLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVL-----------DGHRGPVRCLAASLEMEKVVMGF 290 (358)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~h~~~v~~i~~~~~~~~~~~~~ 290 (358)
...++....++++|++.+++++ .|+.|++||+.+++.. .+..+ .+|...|++++|+|+ +.
T Consensus 252 ~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------g~ 322 (343)
T 2xzm_R 252 FDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKA--PVCTIEAEPITKAEGQKGKNPQCTSLAWNAL------GK 322 (343)
T ss_dssp EECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSC--SEEECCCCSGGGBTTBCCSCCCEEEEEECSS------SC
T ss_pred ecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCC--ceEEeecCcchhhhhhcCCCCceEEEEECCC------CC
Confidence 1123444456677788777655 5778999999876431 11122 268889999999999 88
Q ss_pred EEEEccCCCcEEEEEeee
Q 038537 291 LVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 291 ~l~s~~~dg~v~iw~~~~ 308 (358)
+|++|+.||.|++|++++
T Consensus 323 ~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 323 KLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CEEEEETTSEEEEEEEEE
T ss_pred eEEEecCCceEEEEEEEc
Confidence 999999999999999975
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=8.4e-43 Score=291.30 Aligned_cols=268 Identities=18% Similarity=0.304 Sum_probs=218.8
Q ss_pred CEEeeeCCCcEEEEeCCC-----ceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCC
Q 038537 1 MVFTGSSSTRIRVWRQPD-----CVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~-----~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
+|++|+.||+|++|++.+ +.++..+.+|...|.++.+ ++.+|++|+.|++|++||+.+++...
T Consensus 32 ~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~---------- 101 (319)
T 3frx_A 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ---------- 101 (319)
T ss_dssp EEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----------
T ss_pred EEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE----------
Confidence 489999999999999853 3456788999999998877 57899999999999999998876542
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC------CCE
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD------DGF 147 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~ 147 (358)
.+.+|...|.+++|+|++.+|++|+.|++|++||++.. .+..+.+|...|.++.+.|. +..
T Consensus 102 ----------~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 168 (319)
T 3frx_A 102 ----------RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ---CLATLLGHNDWVSQVRVVPNEKADDDSVT 168 (319)
T ss_dssp ----------EEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC---EEEEECCCSSCEEEEEECCC------CCE
T ss_pred ----------EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eEEEEeccCCcEEEEEEccCCCCCCCccE
Confidence 34689999999999999999999999999999999754 46777889999999999985 448
Q ss_pred EEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec-c
Q 038537 148 VFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG-H 226 (358)
Q Consensus 148 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~ 226 (358)
+++++.|+.|++||++. ......+.+|...|.+++|+| ++.+|++++.||.|++||+.+.... ..+.. .
T Consensus 169 l~s~~~d~~i~~wd~~~----~~~~~~~~~h~~~v~~~~~sp--~g~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~ 238 (319)
T 3frx_A 169 IISAGNDKMVKAWNLNQ----FQIEADFIGHNSNINTLTASP--DGTLIASAGKDGEIMLWNLAAKKAM----YTLSAQD 238 (319)
T ss_dssp EEEEETTSCEEEEETTT----TEEEEEECCCCSCEEEEEECT--TSSEEEEEETTCEEEEEETTTTEEE----EEEECCS
T ss_pred EEEEeCCCEEEEEECCc----chhheeecCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcEE----EEecCCC
Confidence 99999999999999954 344556678999999999998 9999999999999999999874322 22222 2
Q ss_pred cceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeee----ecCcccceEEEEeecccceeeeCeEEEEccCCCcEE
Q 038537 227 CFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAV----LDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFK 302 (358)
Q Consensus 227 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~ 302 (358)
....++++|++.+|++++.+ .+++|++............ ...|...+.+++|+|+ |++|++|+.||.|+
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd------g~~l~sg~~Dg~i~ 311 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD------GQTLFAGYTDNVIR 311 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTT------SSEEEEEETTSCEE
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCC------CCEEEEeecCceEE
Confidence 23446677889999888755 5999999876322111111 1235678999999999 89999999999999
Q ss_pred EEEeee
Q 038537 303 VWRVKV 308 (358)
Q Consensus 303 iw~~~~ 308 (358)
+||+.+
T Consensus 312 vWd~~t 317 (319)
T 3frx_A 312 VWQVMT 317 (319)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 999975
No 15
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-42 Score=299.28 Aligned_cols=257 Identities=25% Similarity=0.445 Sum_probs=220.3
Q ss_pred eeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC
Q 038537 22 RGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99 (358)
Q Consensus 22 ~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 99 (358)
...+.+|.++|.++.++ +.+|++|+.||+|++||+.+++... .+.+|.+.|.+++|+|
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~--------------------~l~~h~~~V~~v~~~~ 160 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--------------------TLKGHTDSVQDISFDH 160 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--------------------EECCCSSCEEEEEECT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE--------------------EEeccCCcEEEEEEcC
Confidence 45678999999999884 6799999999999999998776542 4478999999999999
Q ss_pred CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccC
Q 038537 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ 179 (358)
Q Consensus 100 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 179 (358)
++++|++|+.|++|++||+.+.+ ++..+.+|...|.+++|+|++++|++|+.|+.|++||++++. ....+..|.
T Consensus 161 ~~~~l~sgs~D~~i~iwd~~~~~--~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~----~~~~~~~h~ 234 (410)
T 1vyh_C 161 SGKLLASCSADMTIKLWDFQGFE--CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY----CVKTFTGHR 234 (410)
T ss_dssp TSSEEEEEETTSCCCEEETTSSC--EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC----EEEEEECCS
T ss_pred CCCEEEEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc----EEEEEeCCC
Confidence 99999999999999999998887 788889999999999999999999999999999999996554 345567789
Q ss_pred CceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeee----------------------C
Q 038537 180 SSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI----------------------E 237 (358)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~ 237 (358)
..|.++.++| ++.+|++|+.|+.|++||+++. .....+.+|...+.++.+. +
T Consensus 235 ~~v~~~~~~~--~g~~l~s~s~D~~v~vwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 308 (410)
T 1vyh_C 235 EWVRMVRPNQ--DGTLIASCSNDQTVRVWVVATK----ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308 (410)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred ccEEEEEECC--CCCEEEEEcCCCeEEEEECCCC----ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCC
Confidence 9999999998 9999999999999999999873 2333466777777666542 5
Q ss_pred CEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceee
Q 038537 238 KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMC 317 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~ 317 (358)
.+|++|+.|+.|++||+.++ +++..+.+|...|++++|+|+ +.+|++|+.||.|++||++. ..+
T Consensus 309 ~~l~sgs~D~~i~iwd~~~~----~~~~~~~~h~~~v~~v~~~~~------g~~l~s~s~D~~i~vwd~~~------~~~ 372 (410)
T 1vyh_C 309 PFLLSGSRDKTIKMWDVSTG----MCLMTLVGHDNWVRGVLFHSG------GKFILSCADDKTLRVWDYKN------KRC 372 (410)
T ss_dssp CEEEEEETTSEEEEEETTTT----EEEEEEECCSSCEEEEEECSS------SSCEEEEETTTEEEEECCTT------SCC
T ss_pred CEEEEEeCCCeEEEEECCCC----ceEEEEECCCCcEEEEEEcCC------CCEEEEEeCCCeEEEEECCC------Cce
Confidence 68999999999999999998 667888899999999999999 88999999999999999863 334
Q ss_pred cccccCCCC
Q 038537 318 LDYSDYHSN 326 (358)
Q Consensus 318 ~~~~~~~~~ 326 (358)
+..+..|..
T Consensus 373 ~~~~~~h~~ 381 (410)
T 1vyh_C 373 MKTLNAHEH 381 (410)
T ss_dssp CEEEECCSS
T ss_pred EEEEcCCCC
Confidence 445555543
No 16
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.4e-42 Score=314.64 Aligned_cols=280 Identities=16% Similarity=0.227 Sum_probs=220.8
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
|++|+.|++|++||..+++....+.+|...|.++++ ++++|++|+.|++|++||+.+++........
T Consensus 163 l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~----------- 231 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD----------- 231 (611)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCT-----------
T ss_pred EEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccc-----------
Confidence 899999999999999999999999999999999987 5789999999999999999877654322100
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccc-----------------------------------
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCT----------------------------------- 124 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------------------------------- 124 (358)
.....+|.+.|.+++|+|++++|++++.|++|++||+.+++..
T Consensus 232 --~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~ 309 (611)
T 1nr0_A 232 --SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 309 (611)
T ss_dssp --TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEE
T ss_pred --cccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEE
Confidence 0011379999999999999999999999999999999876521
Q ss_pred ------ccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceee--------------------------
Q 038537 125 ------CVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLT-------------------------- 172 (358)
Q Consensus 125 ------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------------------------- 172 (358)
....+.+|...|++++|+|++++|++++.|+.|++||+.++.....+.
T Consensus 310 ~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~ 389 (611)
T 1nr0_A 310 NPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH 389 (611)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTE
T ss_pred eCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCc
Confidence 112345789999999999999999999999999999986542111000
Q ss_pred ---------------------------e-------------------------eecccCCceeEEEEeecCCCcEEEEee
Q 038537 173 ---------------------------M-------------------------TLKFQQSSVNALALSSFFDNYFLYSGS 200 (358)
Q Consensus 173 ---------------------------~-------------------------~~~~~~~~i~~~~~~~~~~~~~l~~~~ 200 (358)
. ....+...+.+++|+| ++++|++|+
T Consensus 390 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~sp--dg~~lasgs 467 (611)
T 1nr0_A 390 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN--DKQFVAVGG 467 (611)
T ss_dssp EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECT--TSCEEEEEE
T ss_pred eEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeC--CCCEEEEeC
Confidence 0 0001234567889998 999999999
Q ss_pred cCCcEEEEEccCCcCCccccceeeccccee--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeee--ecCcccceEE
Q 038537 201 SDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAV--LDGHRGPVRC 276 (358)
Q Consensus 201 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~h~~~v~~ 276 (358)
.|+.|++||+..... ..... .+|...+ ++++|++++|++++.|+.|++||+.+.. ++... +.+|...|++
T Consensus 468 ~D~~v~lwd~~~~~~--~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~---~~~~~~~~~~H~~~V~~ 541 (611)
T 1nr0_A 468 QDSKVHVYKLSGASV--SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF---ELAHTNSWTFHTAKVAC 541 (611)
T ss_dssp TTSEEEEEEEETTEE--EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT---EESCCCCCCCCSSCEEE
T ss_pred CCCeEEEEEccCCce--eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC---ceeeeeeeeecccceeE
Confidence 999999999976321 11122 4566655 5567789999999999999999998732 23332 3459999999
Q ss_pred EEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 277 LAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 277 i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
++|+|+ +++|++|+.|++|++||+..
T Consensus 542 v~fspd------g~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 542 VSWSPD------NVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp EEECTT------SSEEEEEETTSCEEEEETTC
T ss_pred EEECCC------CCEEEEEECCCcEEEEECCC
Confidence 999999 88999999999999999975
No 17
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=290.55 Aligned_cols=261 Identities=20% Similarity=0.271 Sum_probs=218.5
Q ss_pred ceeeeeeeecccceEEEEec------CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCce
Q 038537 19 CVERGFIKARHGEVRAILAH------DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCV 92 (358)
Q Consensus 19 ~~~~~~~~~h~~~v~~i~~~------~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 92 (358)
+.....+.+|.+.|.++++. +.+|++|+.|++|++|++........ ..+.+|...|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~------------------~~l~gh~~~v 83 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ------------------WSLEGHQLGV 83 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE------------------EEECCCSSCE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee------------------eeeccCCCCE
Confidence 33445667899999999883 45899999999999999876542111 1347899999
Q ss_pred EEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceee
Q 038537 93 SCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLT 172 (358)
Q Consensus 93 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 172 (358)
.+++|++++.++++++.|++|++||+.+++ .+..+..|...+.+++|+|++++|++++.||.|++||++++.. .
T Consensus 84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~----~ 157 (321)
T 3ow8_A 84 VSVDISHTLPIAASSSLDAHIRLWDLENGK--QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK----E 157 (321)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE----E
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCC--EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce----e
Confidence 999999999999999999999999999887 6777888888999999999999999999999999999965543 3
Q ss_pred eeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEeeeCCEEEEeeCCCeEE
Q 038537 173 MTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIR 250 (358)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~ 250 (358)
..+..+...+.+++|+| ++++|++|+.||.|++||+++. .....+.+|...+ ++++|++++|++|+.||.|+
T Consensus 158 ~~~~~~~~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 158 YSLDTRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATG----KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 231 (321)
T ss_dssp EEEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTT----EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred EEecCCCceEEEEEECC--CCCEEEEEcCCCeEEEEECCCC----cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence 44556788899999998 9999999999999999999873 3344466676655 55667899999999999999
Q ss_pred EEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCC
Q 038537 251 VWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHS 325 (358)
Q Consensus 251 iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~ 325 (358)
+||++++ +....+.+|...|++++|+|+ +.+|++++.||+|++||+++ ..++..+..|.
T Consensus 232 iwd~~~~----~~~~~~~~h~~~v~~~~~sp~------~~~l~s~s~D~~v~iwd~~~------~~~~~~~~~h~ 290 (321)
T 3ow8_A 232 IYDVQHA----NLAGTLSGHASWVLNVAFCPD------DTHFVSSSSDKSVKVWDVGT------RTCVHTFFDHQ 290 (321)
T ss_dssp EEETTTC----CEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTT------TEEEEEECCCS
T ss_pred EEECCCc----ceeEEEcCCCCceEEEEECCC------CCEEEEEeCCCcEEEEeCCC------CEEEEEEcCCC
Confidence 9999987 567788999999999999999 88999999999999999973 34555555544
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6.2e-42 Score=294.38 Aligned_cols=279 Identities=23% Similarity=0.335 Sum_probs=219.7
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeeccc------------------ceEEEEe--cCCEEEEEeCCceEEEEeccccc
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHG------------------EVRAILA--HDNMLFTTNKDCKIRIWNFTVSD 60 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~------------------~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~ 60 (358)
+||+|+ ++.+++|++.+++.+..+..|.. .|.++++ ++++|++|+.||.|++||+.+++
T Consensus 78 ~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~ 156 (393)
T 1erj_A 78 YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK 156 (393)
T ss_dssp EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 366665 78999999999988887766542 3778877 57899999999999999998765
Q ss_pred ccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEE
Q 038537 61 NFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIV 140 (358)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 140 (358)
... .+.+|...|.+++|+|++++|++|+.|++|++||+++++ ....+ .+...+.+++
T Consensus 157 ~~~--------------------~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~--~~~~~-~~~~~v~~~~ 213 (393)
T 1erj_A 157 IVM--------------------ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ--CSLTL-SIEDGVTTVA 213 (393)
T ss_dssp EEE--------------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEE
T ss_pred EEE--------------------EEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCe--eEEEE-EcCCCcEEEE
Confidence 432 346899999999999999999999999999999999887 44444 3567899999
Q ss_pred EcC-CCCEEEEEeCCCcEEEEEceecCCcceee---eeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCC
Q 038537 141 VNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLT---MTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGG 216 (358)
Q Consensus 141 ~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 216 (358)
|+| ++++|++|+.||.|++||++++.....+. ....+|...|.+++|+| ++.+|++|+.|+.|++||++.....
T Consensus 214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~g~~l~s~s~d~~v~~wd~~~~~~~ 291 (393)
T 1erj_A 214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR--DGQSVVSGSLDRSVKLWNLQNANNK 291 (393)
T ss_dssp ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT--TSSEEEEEETTSEEEEEEC------
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC--CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 999 89999999999999999997654332221 11246889999999998 9999999999999999999863321
Q ss_pred --------ccccceeecccceeEEE--eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeeccccee
Q 038537 217 --------FNHGGFLQGHCFAVLCL--VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKV 286 (358)
Q Consensus 217 --------~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~ 286 (358)
......+.+|...+.++ ++++.+|++|+.||.|++||..++ +++..+.+|.+.|.+++|++.....
T Consensus 292 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~----~~~~~l~~h~~~v~~v~~~~~~~~~ 367 (393)
T 1erj_A 292 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG----NPLLMLQGHRNSVISVAVANGSSLG 367 (393)
T ss_dssp ---------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEECSSCTTC
T ss_pred ccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC----eEEEEECCCCCCEEEEEecCCcCcC
Confidence 11223455677766554 567899999999999999999998 5677889999999999998732111
Q ss_pred eeCeEEEEccCCCcEEEEEeeeC
Q 038537 287 VMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 287 ~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
.++.+|++|+.||+|++|+++..
T Consensus 368 p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 368 PEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp TTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCEEEEECCCCcEEECccccc
Confidence 11689999999999999999854
No 19
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.1e-41 Score=306.96 Aligned_cols=291 Identities=15% Similarity=0.179 Sum_probs=229.9
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccc----------
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTT---------- 69 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~---------- 69 (358)
|++++ ++.|++|++.+++....+.+|...|.++++ ++++|++|+.||+|+|||+.+++.........
T Consensus 33 l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~f 111 (611)
T 1nr0_A 33 IQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 111 (611)
T ss_dssp EEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEE
T ss_pred EEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEE
Confidence 66766 579999999999999999999999998876 67899999999999999987543321111111
Q ss_pred cCCCceee-------------ee---cCCCccccCCCceEEEEEeCCCC-EEEEEecCCeEEEEEccCCccccccccccc
Q 038537 70 LPRRSSFL-------------SF---SKSNTQQQHRDCVSCMAFYHAEG-LLYTGSFDKTVKAWRVLDKRCTCVDSFVAH 132 (358)
Q Consensus 70 ~~~~~~~~-------------~~---~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 132 (358)
.+....+. .+ .....+.+|...|++++|+|++. .|++|+.|++|++||..+.+ ....+.+|
T Consensus 112 s~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~--~~~~l~~H 189 (611)
T 1nr0_A 112 DSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--FKSTFGEH 189 (611)
T ss_dssp CTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--EEEEECCC
T ss_pred CCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe--Eeeeeccc
Confidence 11111111 11 11235679999999999999987 69999999999999998776 67788899
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeee---eecccCCceeEEEEeecCCCcEEEEeecCCcEEEEE
Q 038537 133 ESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTM---TLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWE 209 (358)
Q Consensus 133 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d 209 (358)
...|.+++|+|++++|++++.|+.|++||+.+++....+.. ....|...|.+++|+| ++.+|++++.|++|++||
T Consensus 190 ~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp--dg~~l~s~s~D~~v~lWd 267 (611)
T 1nr0_A 190 TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP--DGTKIASASADKTIKIWN 267 (611)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT--TSSEEEEEETTSEEEEEE
T ss_pred cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC--CCCEEEEEeCCCeEEEEe
Confidence 99999999999999999999999999999866543222210 0116899999999998 999999999999999999
Q ss_pred ccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeC
Q 038537 210 KDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMG 289 (358)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~ 289 (358)
+++......... ...+......+.++++.+++++.||.+++||...+ ++...+.+|...|++++|+|+ +
T Consensus 268 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~----~~~~~~~gh~~~v~~l~~spd------g 336 (611)
T 1nr0_A 268 VATLKVEKTIPV-GTRIEDQQLGIIWTKQALVSISANGFINFVNPELG----SIDQVRYGHNKAITALSSSAD------G 336 (611)
T ss_dssp TTTTEEEEEEEC-CSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT----EEEEEECCCSSCEEEEEECTT------S
T ss_pred CCCCceeeeecC-CCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC----CcceEEcCCCCCEEEEEEeCC------C
Confidence 987432211110 11223345666778999999999999999999887 466778899999999999999 8
Q ss_pred eEEEEccCCCcEEEEEeee
Q 038537 290 FLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 290 ~~l~s~~~dg~v~iw~~~~ 308 (358)
++|++++.||.|++||+..
T Consensus 337 ~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 337 KTLFSADAEGHINSWDIST 355 (611)
T ss_dssp SEEEEEETTSCEEEEETTT
T ss_pred CEEEEEeCCCcEEEEECCC
Confidence 8999999999999999974
No 20
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=281.30 Aligned_cols=263 Identities=21% Similarity=0.314 Sum_probs=214.1
Q ss_pred ceeeeeeeeccc-ceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEE
Q 038537 19 CVERGFIKARHG-EVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCM 95 (358)
Q Consensus 19 ~~~~~~~~~h~~-~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 95 (358)
.+++..+.+|.. .|.++++ ++++|++|+.|++|+|||+.++....... ...+|...|.++
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~-----------------~~~~h~~~v~~~ 67 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSV-----------------LSEGHQRTVRKV 67 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEE-----------------ECSSCSSCEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeee-----------------eccccCCcEEEE
Confidence 456778889987 8888877 57899999999999999998664321110 125899999999
Q ss_pred EEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeee
Q 038537 96 AFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTL 175 (358)
Q Consensus 96 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 175 (358)
+|+|++++|++|+.|+.+++|++..+....+..+.+|...|.+++|+|++++|++++.|+.|++||++.+.. ......+
T Consensus 68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~ 146 (345)
T 3fm0_A 68 AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE-YECVSVL 146 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC-EEEEEEE
T ss_pred EECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC-eEEEEEe
Confidence 999999999999999999999998876556778889999999999999999999999999999999975532 2334556
Q ss_pred cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eeeCCEEEEeeCCCeEEEEE
Q 038537 176 KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAIEKLIFSGSEDTTIRVWR 253 (358)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd 253 (358)
..|...|.+++|+| ++.+|++++.|+.|++||++... ......+.+|...+.++ +|++++|++|+.|+.|++||
T Consensus 147 ~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~--~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~ 222 (345)
T 3fm0_A 147 NSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDD--WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222 (345)
T ss_dssp CCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCC--EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence 77899999999998 89999999999999999987632 22334467787777554 56789999999999999999
Q ss_pred cCCCce-----------eeeeeeeecC-cccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 254 RAEGGC-----------YHECLAVLDG-HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 254 ~~~~~~-----------~~~~~~~~~~-h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
...... ..+++..+.+ |...|.+++|+|+ +..|++++.|+.|++|++...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~------~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL------TGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT------TCCEEEEETTSCEEEEEECTT
T ss_pred cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC------CCEEEEEeCCCeEEEEEeCCC
Confidence 743211 1233445555 8899999999999 789999999999999999754
No 21
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.6e-40 Score=273.47 Aligned_cols=260 Identities=17% Similarity=0.229 Sum_probs=207.4
Q ss_pred eeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC
Q 038537 23 GFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA 100 (358)
Q Consensus 23 ~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 100 (358)
..+.+|.+.|.++++ ++++|++|+.|++|+|||+...... ...++.+|.++|.+++|+|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~------------------~~~~l~gH~~~V~~v~~s~~ 64 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK------------------LIDTLTGHEGPVWRVDWAHP 64 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC------------------CCEEECCCSSCEEEEEECCG
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE------------------EEEEEccccCCeEEEEecCC
Confidence 456789999999887 5789999999999999998743210 01245789999999999863
Q ss_pred --CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC--CCEEEEEeCCCcEEEEEceecCCcceeeeeec
Q 038537 101 --EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD--DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLK 176 (358)
Q Consensus 101 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 176 (358)
+++|++|+.|++|++||+.+++...+..+..|...|.+++|+|+ +.+|++++.|+.|++||++...... ...+.
T Consensus 65 ~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~--~~~~~ 142 (297)
T 2pm7_B 65 KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS--PIIID 142 (297)
T ss_dssp GGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBC--CEEEE
T ss_pred CcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCcee--eeeee
Confidence 88999999999999999998764456677789999999999997 8899999999999999997653221 23456
Q ss_pred ccCCceeEEEEeecC-----------CCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe--ee---CCEE
Q 038537 177 FQQSSVNALALSSFF-----------DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV--AI---EKLI 240 (358)
Q Consensus 177 ~~~~~i~~~~~~~~~-----------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~l 240 (358)
.|...|.+++|+|.. ++.+|++|+.|+.|++||++...........+.+|...|.++. |+ +.+|
T Consensus 143 ~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~l 222 (297)
T 2pm7_B 143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYM 222 (297)
T ss_dssp CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEE
Confidence 789999999999831 2579999999999999999874433334455778888886665 44 3789
Q ss_pred EEeeCCCeEEEEEcCCCceeee-eeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 241 FSGSEDTTIRVWRRAEGGCYHE-CLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 241 ~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
++++.|+.|++||+........ .......|...|.+++|+|+ +.+|++++.||.|++|+...
T Consensus 223 as~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS------GNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS------SCCEEEEETTSCEEEEEECT
T ss_pred EEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCC------CCEEEEEcCCCcEEEEEECC
Confidence 9999999999999987531111 11112578889999999999 88999999999999999863
No 22
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-40 Score=276.99 Aligned_cols=264 Identities=22% Similarity=0.292 Sum_probs=206.7
Q ss_pred CceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEE
Q 038537 18 DCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAF 97 (358)
Q Consensus 18 ~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 97 (358)
+.+.+..+.+|.++|.++.+++++|++|+.|++|++||+..+........ ...+|...|.+++|
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~----------------~~~~h~~~v~~v~~ 66 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVL----------------DETAHKKAIRSVAW 66 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEE----------------CTTCCCSCEEEEEE
T ss_pred ccccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEE----------------ecCCccCCEEEEEE
Confidence 45677889999999999999888999999999999999986431110000 01249999999999
Q ss_pred eCCCCEEEEEecCCeEEEEEccCC-----cccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceee
Q 038537 98 YHAEGLLYTGSFDKTVKAWRVLDK-----RCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLT 172 (358)
Q Consensus 98 ~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 172 (358)
+|++++|++|+.|++|++||+... ....+..+.+|...|.+++|+|++++|++|+.|+.|++||++.........
T Consensus 67 sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 67 RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI 146 (330)
T ss_dssp CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE
Confidence 999999999999999999998542 122456678899999999999999999999999999999996543344455
Q ss_pred eeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee--e--CCEEEEeeCCCe
Q 038537 173 MTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA--I--EKLIFSGSEDTT 248 (358)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~~~~~dg~ 248 (358)
..+..|...|.+++|+| ++.+|++++.|+.|++||..... ......+.+|...+.++.+ + +.+|++|+.|+.
T Consensus 147 ~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~ 222 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222 (330)
T ss_dssp EEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred EEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence 66778999999999998 89999999999999999987631 2334457788888866654 4 468999999999
Q ss_pred EEEEEcCCCc----eeeeeeeeecC-cccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 249 IRVWRRAEGG----CYHECLAVLDG-HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 249 i~iwd~~~~~----~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
|++||+..+. ....+...+.+ |...|.+++|+++ .+|++++.||.|++||+..
T Consensus 223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~-------~~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN-------GLIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-------SCEEEEETTSCEEEEEEET
T ss_pred EEEEEecCCCccccceeEEeeecccccccceEEEEEcCC-------CEEEEEeCCCEEEEEEcCC
Confidence 9999987541 11133445554 9999999999975 4899999999999999863
No 23
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=5.7e-40 Score=284.79 Aligned_cols=269 Identities=18% Similarity=0.302 Sum_probs=221.2
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeee--ecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIK--ARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~--~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
||+| .|++|+|||..+++....+. +|...|++++| ++++|++|+.||+|++||+.+++.+.
T Consensus 119 lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~-------------- 183 (420)
T 4gga_A 119 LAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-------------- 183 (420)
T ss_dssp EEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--------------
T ss_pred EEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE--------------
Confidence 4555 59999999999998877665 57788999987 57899999999999999999876553
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcE
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSV 157 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 157 (358)
.+.+|...+.++++ ++..|++|+.|+.+++||..... ..+..+.+|...+..+.++|++.++++++.|+.+
T Consensus 184 ------~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~-~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v 254 (420)
T 4gga_A 184 ------NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 254 (420)
T ss_dssp ------EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ------EEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecccc-eeeEEecccccceeeeeecCCCCeeeeeeccccc
Confidence 33689999999888 46799999999999999988755 2556778899999999999999999999999999
Q ss_pred EEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEE--eecCCcEEEEEccCCcCCccccceeeccc-ceeEEEe
Q 038537 158 KIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYS--GSSDGSINFWEKDKMSGGFNHGGFLQGHC-FAVLCLV 234 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~ 234 (358)
++|+...++...........|...|.+++|+| .+..++++ |+.|+.|++||+.++.. ...+..+. .....++
T Consensus 255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p-~~~~~la~~~gs~D~~I~iwd~~t~~~----~~~~~~~~~v~~~~~~ 329 (420)
T 4gga_A 255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP-WQSNVLATGGGTSDRHIRIWNVCSGAC----LSAVDAHSQVCSILWS 329 (420)
T ss_dssp EEEESSCCSSCSCCSEEECCCSSCEEEEEECT-TCTTEEEEEECTTTCEEEEEETTTTEE----EEEEECSSCEEEEEEE
T ss_pred eEEeeccccccceeeeeecccCCceeeeeeCC-CcccEEEEEeecCCCEEEEEeCCcccc----ceeeccccceeeeeec
Confidence 99999887666555666777899999999998 34556655 45799999999988432 22233332 2334556
Q ss_pred eeCCEEEEee--CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 235 AIEKLIFSGS--EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 235 ~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
++++.+++++ .|+.|++||+.++ +++..+.+|.+.|++++|+|+ +.+|+|||.||+|+|||+...
T Consensus 330 ~~~~~lv~~sg~~d~~I~iwd~~~~----~~v~~l~gH~~~V~~l~~spd------g~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 330 PHYKELISGHGFAQNQLVIWKYPTM----AKVAELKGHTSRVLSLTMSPD------GATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp TTTTEEEEEECTTTCCEEEEETTTC----CEEEEECCCSSCEEEEEECTT------SSCEEEEETTTEEEEECCSCS
T ss_pred CCCCeEEEEEecCCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCC------CCEEEEEecCCeEEEEECCCC
Confidence 6777777654 7999999999998 678889999999999999999 889999999999999999754
No 24
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=279.97 Aligned_cols=267 Identities=16% Similarity=0.162 Sum_probs=192.2
Q ss_pred EEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccC
Q 038537 11 IRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQH 88 (358)
Q Consensus 11 v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 88 (358)
.+.|++....+ ..|...|.++.| +|.+|++++ |+++++||............... ........|
T Consensus 16 ~r~w~~~~~~~----~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~---------~~~~~~~~~ 81 (344)
T 4gqb_B 16 AREWNLPPNAP----ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNE---------GFCSAGVQT 81 (344)
T ss_dssp -------CCSC----SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCG---------GGCSEEEEE
T ss_pred ccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCc---------ceeeeeecc
Confidence 45677654432 346677888877 577887777 77888887432111000000000 000112356
Q ss_pred CCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccc--ccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecC
Q 038537 89 RDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCV--DSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRE 166 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 166 (358)
...|.+++|+|++ .|++|+.||+|++||+.+++.... ..+.+|...|++++|+|++++|++|+.|+.|++||++++
T Consensus 82 ~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~- 159 (344)
T 4gqb_B 82 EAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ- 159 (344)
T ss_dssp SSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred CCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC-
Confidence 7789999999985 688999999999999998773222 234479999999999999999999999999999999544
Q ss_pred CcceeeeeecccCCceeEEEEeecCCC-cEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee-eCCEEEEee
Q 038537 167 NSHTLTMTLKFQQSSVNALALSSFFDN-YFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA-IEKLIFSGS 244 (358)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~ 244 (358)
.....+.+|...|.+++|++ ++ .+|++++.|+.|++||+++.+..........++.....++++ ++++|++|+
T Consensus 160 ---~~~~~~~~h~~~V~~~~~~~--~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 160 ---VVLSSYRAHAAQVTCVAASP--HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp ---EEEEEECCCSSCEEEEEECS--SCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE
T ss_pred ---cEEEEEcCcCCceEEEEecC--CCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec
Confidence 45566788999999999998 55 588999999999999999855433332222223333445555 457899999
Q ss_pred CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeC-eEEEEccCCCcEEEEEeee
Q 038537 245 EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMG-FLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~-~~l~s~~~dg~v~iw~~~~ 308 (358)
.||.|++||++++ +++..+.+|...|++++|+|+ + .+|++|+.||+|+|||++.
T Consensus 235 ~dg~v~~wd~~~~----~~~~~~~~h~~~v~~v~fsp~------g~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 235 ENGTVSLVDTKST----SCVLSSAVHSQCVTGLVFSPH------SVPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp TTSEEEEEESCC------CCEEEECCSSCEEEEEECSS------SSCCEEEEETTSCEEEECTTC
T ss_pred cCCcEEEEECCCC----cEEEEEcCCCCCEEEEEEccC------CCeEEEEEeCCCeEEEEECCC
Confidence 9999999999998 667889999999999999998 5 5899999999999999864
No 25
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7e-40 Score=281.01 Aligned_cols=272 Identities=16% Similarity=0.150 Sum_probs=216.1
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeee--ecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCce
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIK--ARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~--~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
+|++|+.||.|++||+.+++....+. +|...|.++.+. +++|++++.||.|++||+.+... ....
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~--------- 157 (383)
T 3ei3_B 88 TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI-QVFA--------- 157 (383)
T ss_dssp EEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-EEEE---------
T ss_pred EEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-EEEe---------
Confidence 48999999999999999888777665 699999999884 47999999999999999985322 1111
Q ss_pred eeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCC-EEEEEeCC
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDG-FVFTCSSD 154 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d 154 (358)
...+|...|.+++|+|++++|++|+.|+.|++||++ ++ .+..+..|...|.+++|+|+++ ++++++.|
T Consensus 158 --------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~--~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 226 (383)
T 3ei3_B 158 --------KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GH--EIFKEKLHKAKVTHAEFNPRCDWLMATSSVD 226 (383)
T ss_dssp --------CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SC--EEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred --------ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CC--EEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence 113566889999999999999999999999999994 44 5777888999999999999998 99999999
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccce---eecc-----
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF---LQGH----- 226 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~----- 226 (358)
+.|++||+++........... .|...|.+++|+| .++.+|++++.|+.|++||+++.......... ...|
T Consensus 227 ~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T 3ei3_B 227 ATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNP-TDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK 304 (383)
T ss_dssp SEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECT-TTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC
T ss_pred CEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcC-CCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE
Confidence 999999998755444444444 5889999999986 37889999999999999999875433221100 0011
Q ss_pred -------cceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecC--cccceEEEEeecccceeeeCeEEEEccC
Q 038537 227 -------CFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDG--HRGPVRCLAASLEMEKVVMGFLVYSSSL 297 (358)
Q Consensus 227 -------~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~~~~~l~s~~~ 297 (358)
.....++++++++ +|+.||.|++||+.++ +.+..+.+ |...+..++|+|+ +.+|++|+
T Consensus 305 ~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~----~~~~~l~~~~~~~~~~~~~~s~~------g~~l~s~s- 371 (383)
T 3ei3_B 305 ATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG----GLVHQLRDPNAAGIISLNKFSPT------GDVLASGM- 371 (383)
T ss_dssp CEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC----CEEEEECBTTBCSCCCEEEECTT------SSEEEEEE-
T ss_pred EeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC----ceeeeecCCCCCceEEEEEEecC------ccEEEEec-
Confidence 1112445566666 8889999999999998 45667766 5677888899999 88999997
Q ss_pred CCcEEEEEeee
Q 038537 298 DQTFKVWRVKV 308 (358)
Q Consensus 298 dg~v~iw~~~~ 308 (358)
||.|++||+++
T Consensus 372 d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 GFNILIWNRED 382 (383)
T ss_dssp TTEEEEEECC-
T ss_pred CCcEEEEecCC
Confidence 99999999874
No 26
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.2e-40 Score=288.69 Aligned_cols=266 Identities=25% Similarity=0.445 Sum_probs=224.4
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
+|++|+.||.|++||+.+++....+.+|.+.|.++.+++++|++|+.||.|++||+.+++...
T Consensus 145 ~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~----------------- 207 (435)
T 1p22_A 145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN----------------- 207 (435)
T ss_dssp EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEE-----------------
T ss_pred EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEE-----------------
Confidence 478999999999999999999999999999999999999999999999999999998876543
Q ss_pred CCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccc-ccccccccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCT-CVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
.+.+|...|.+++|+ +..+++|+.||.|++||+.++... ....+.+|...|.+++| +++++++|+.||.|++
T Consensus 208 ---~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 208 ---TLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKV 280 (435)
T ss_dssp ---EECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred ---EEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEE
Confidence 335789999999996 459999999999999999887621 12566789999999999 6889999999999999
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCE
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKL 239 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (358)
||+++++ ....+..|...|.++.+. +.++++|+.||.|++||++++ .....+.+|...+.++.+++.+
T Consensus 281 wd~~~~~----~~~~~~~~~~~v~~~~~~----~~~l~~g~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~ 348 (435)
T 1p22_A 281 WNTSTCE----FVRTLNGHKRGIACLQYR----DRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCIRFDNKR 348 (435)
T ss_dssp EETTTCC----EEEEEECCSSCEEEEEEE----TTEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEECCSSE
T ss_pred EECCcCc----EEEEEcCCCCcEEEEEeC----CCEEEEEeCCCeEEEEECCCC----CEEEEEeCCcCcEEEEEecCCE
Confidence 9996553 445566788999999884 679999999999999999873 3445577899999999999999
Q ss_pred EEEeeCCCeEEEEEcCCCceee-----eeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 240 IFSGSEDTTIRVWRRAEGGCYH-----ECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 240 l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
|++|+.||.|++||+.++.... .++..+.+|.+.|++++| + +.+|++++.||.|++||+.+.+
T Consensus 349 l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~------~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 349 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--D------EFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--C------SSCEEECCSSSEEEEEC-----
T ss_pred EEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--C------CCEEEEEeCCCEEEEEECCCCC
Confidence 9999999999999997653100 157788899999999999 4 5689999999999999998643
No 27
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=6.2e-40 Score=282.64 Aligned_cols=270 Identities=13% Similarity=0.148 Sum_probs=221.2
Q ss_pred CEEeeeCCCcEEEEeCCCce------eeeeeeecccceEEEEe--c----C---CEEEEEeCCceEEEEecccccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPDCV------ERGFIKARHGEVRAILA--H----D---NMLFTTNKDCKIRIWNFTVSDNFRTK 65 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~------~~~~~~~h~~~v~~i~~--~----~---~~l~s~~~dg~i~iw~~~~~~~~~~~ 65 (358)
+|++|+.||.|++||+.+++ .+..+.+|...|.++.+ + + .+|++++.||.|++|++.+++.....
T Consensus 28 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 107 (397)
T 1sq9_A 28 FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKV 107 (397)
T ss_dssp EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCE
T ss_pred eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccc
Confidence 48999999999999999887 78888999999999876 4 6 79999999999999999877641110
Q ss_pred cccccCCCceeeeecCCCccccC-----CCceEEEEEe----CCCCE-EEEEecCCeEEEEEccC------Ccccccc--
Q 038537 66 KVTTLPRRSSFLSFSKSNTQQQH-----RDCVSCMAFY----HAEGL-LYTGSFDKTVKAWRVLD------KRCTCVD-- 127 (358)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~------~~~~~~~-- 127 (358)
.. ..+..| ...|.+++|+ |+++. |++++.||.|++||+.+ ++ .+.
T Consensus 108 ~~---------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~ 170 (397)
T 1sq9_A 108 IF---------------EKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL--TLNWS 170 (397)
T ss_dssp EE---------------EEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT--TTCCC
T ss_pred cc---------------eeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc--eeecc
Confidence 00 122456 5889999999 99999 99999999999999988 55 344
Q ss_pred ---cc-------cccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecc---c---CCceeEEEEeecC
Q 038537 128 ---SF-------VAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKF---Q---QSSVNALALSSFF 191 (358)
Q Consensus 128 ---~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~ 191 (358)
.+ ..|...|.+++|+|++ .+++++.||.|++||++++ .....+.. | ...|.+++|+|
T Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~h~~~~~~i~~i~~~~-- 243 (397)
T 1sq9_A 171 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL----RPLYNFESQHSMINNSNSIRSVKFSP-- 243 (397)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT----EEEEEEECCC---CCCCCEEEEEECS--
T ss_pred CcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC----ceeEEEeccccccccCCccceEEECC--
Confidence 55 3488899999999999 9999999999999999654 34445555 7 88999999998
Q ss_pred CCcEEEEeecC---CcEEEEEccCCcCCccccceeec-------------ccceeEE--EeeeCCEEEEeeCCCeEEEEE
Q 038537 192 DNYFLYSGSSD---GSINFWEKDKMSGGFNHGGFLQG-------------HCFAVLC--LVAIEKLIFSGSEDTTIRVWR 253 (358)
Q Consensus 192 ~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~~~~l~~~~~dg~i~iwd 253 (358)
++.+|++++.| |.|++||+++.. ....+.+ |...+.+ +++++++|++++.||.|++||
T Consensus 244 ~~~~l~~~~~d~~~g~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 244 QGSLLAIAHDSNSFGCITLYETEFGE----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp STTEEEEEEEETTEEEEEEEETTTCC----EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEecCCCCceEEEEECCCCc----ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 89999999999 999999998743 2333444 6666655 456789999999999999999
Q ss_pred cCCCceeeeeeeeec------Cc---------------ccceEEEEeecccceeeeC----------eEEEEccCCCcEE
Q 038537 254 RAEGGCYHECLAVLD------GH---------------RGPVRCLAASLEMEKVVMG----------FLVYSSSLDQTFK 302 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~------~h---------------~~~v~~i~~~~~~~~~~~~----------~~l~s~~~dg~v~ 302 (358)
+.++ +++..+. +| ...|++++|+|+ + .+|++++.||.|+
T Consensus 320 ~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~------g~~~~~~~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 320 VKTK----ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKK------GWRSGMGADLNESLCCVCLDRSIR 389 (397)
T ss_dssp TTTT----EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECT------TTSBSTTCTTSCEEEEEETTTEEE
T ss_pred cCCC----ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccc------cccccccccccceEEEecCCCcEE
Confidence 9998 5566777 77 999999999999 6 7999999999999
Q ss_pred EEEeee
Q 038537 303 VWRVKV 308 (358)
Q Consensus 303 iw~~~~ 308 (358)
+|+++.
T Consensus 390 iw~~~~ 395 (397)
T 1sq9_A 390 WFREAG 395 (397)
T ss_dssp EEEEEC
T ss_pred EEEcCC
Confidence 999975
No 28
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2e-39 Score=273.41 Aligned_cols=249 Identities=17% Similarity=0.278 Sum_probs=207.5
Q ss_pred ceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEE
Q 038537 19 CVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMA 96 (358)
Q Consensus 19 ~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 96 (358)
.+....+.+|.+.|.++.+ ++++|++|+.||+|++||+.++.... .+..|...|.+++
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~--------------------~~~~~~~~v~~~~ 104 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH--------------------AIPLRSSWVMTCA 104 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE--------------------EEECSSSCEEEEE
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce--------------------EeecCCccEEEEE
Confidence 4456788999999999987 57799999999999999998766442 2357888999999
Q ss_pred EeCCCCEEEEEecCCeEEEEEccCCcc--cccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeee
Q 038537 97 FYHAEGLLYTGSFDKTVKAWRVLDKRC--TCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMT 174 (358)
Q Consensus 97 ~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 174 (358)
|+|++++|++|+.|+.|++|++.+.+. .....+.+|...|.++.|++++. +++++.|+.|++||++++ .....
T Consensus 105 ~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~----~~~~~ 179 (340)
T 1got_B 105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETG----QQTTT 179 (340)
T ss_dssp ECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTT----EEEEE
T ss_pred ECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCC----cEEEE
Confidence 999999999999999999999986531 24456778999999999998765 889999999999999654 34456
Q ss_pred ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeE--EEeeeCCEEEEeeCCCeEEEE
Q 038537 175 LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL--CLVAIEKLIFSGSEDTTIRVW 252 (358)
Q Consensus 175 ~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iw 252 (358)
+.+|...|.+++|+| ++.++++|+.|+.|++||+++. .....+.+|...+. +++|++++|++|+.||.|++|
T Consensus 180 ~~~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~----~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iw 253 (340)
T 1got_B 180 FTGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREG----MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLF 253 (340)
T ss_dssp ECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTC----SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EcCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCC----eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEE
Confidence 678999999999998 8999999999999999999873 33344667776665 456788999999999999999
Q ss_pred EcCCCceeeeeeeeec--CcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 253 RRAEGGCYHECLAVLD--GHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 253 d~~~~~~~~~~~~~~~--~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
|+++++ .+..+. .+...|++++|+|+ +.+|++|+.||.|++||+..
T Consensus 254 d~~~~~----~~~~~~~~~~~~~v~~~~~s~~------g~~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 254 DLRADQ----ELMTYSHDNIICGITSVSFSKS------GRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp ETTTTE----EEEEECCTTCCSCEEEEEECTT------SSEEEEEETTSEEEEEETTT
T ss_pred ECCCCc----EEEEEccCCcccceEEEEECCC------CCEEEEECCCCeEEEEEccc
Confidence 999874 333332 34458999999999 88999999999999999874
No 29
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.3e-40 Score=296.16 Aligned_cols=257 Identities=26% Similarity=0.425 Sum_probs=219.9
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++++.||.|++||... ..+..+.+|...|.++++ ++++|++++.||.|++|+... +.+.
T Consensus 317 ~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~~~~--------------- 379 (577)
T 2ymu_A 317 TIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQ--------------- 379 (577)
T ss_dssp EEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-CEEE---------------
T ss_pred EEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-CEEE---------------
Confidence 378999999999999765 455778899999998877 578999999999999999643 2211
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
.+.+|...|++++|+|++++|++++.|+.|++||.. ++ .+..+..|...|++++|+|++++|++++.|+.|+
T Consensus 380 -----~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~ 451 (577)
T 2ymu_A 380 -----TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVK 451 (577)
T ss_dssp -----EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CC--EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred -----EecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CC--EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEE
Confidence 336799999999999999999999999999999964 34 5677888999999999999999999999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEE--Eeee
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAI 236 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 236 (358)
+||.. ......+..|...|.+++|+| ++.+|++++.|+.|++||... .....+.+|...+.+ ++|+
T Consensus 452 ~w~~~-----~~~~~~~~~~~~~v~~~~~sp--d~~~las~~~d~~i~iw~~~~-----~~~~~~~~h~~~v~~l~~s~d 519 (577)
T 2ymu_A 452 LWNRN-----GQLLQTLTGHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPD 519 (577)
T ss_dssp EEETT-----SCEEEEEECCSSCEEEEEECT--TSCEEEEEETTSEEEEEETTS-----CEEEEEECCSSCEEEEEECTT
T ss_pred EEECC-----CCEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCEEEEEcCCC-----CEEEEEeCCCCCEEEEEEcCC
Confidence 99963 223456677899999999998 999999999999999999643 344557788877755 5678
Q ss_pred CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
+++|++++.||.|++||.. + +++..+.+|.+.|++++|+|+ +++|+|++.|++|++||
T Consensus 520 g~~l~s~~~dg~v~lwd~~-~----~~~~~~~~h~~~v~~~~fs~d------g~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 520 GQTIASASDDKTVKLWNRN-G----QLLQTLTGHSSSVWGVAFSPD------GQTIASASSDKTVKLWN 577 (577)
T ss_dssp SSCEEEEETTSEEEEECTT-S----CEEEEEECCSSCEEEEEECTT------SSCEEEEETTSCEEEEC
T ss_pred CCEEEEEECcCEEEEEeCC-C----CEEEEEcCCCCCEEEEEEcCC------CCEEEEEeCCCEEEEeC
Confidence 9999999999999999964 4 567888999999999999999 88999999999999997
No 30
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.3e-40 Score=281.05 Aligned_cols=274 Identities=17% Similarity=0.232 Sum_probs=221.1
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeec-----ccceEEEEec------CCEEEEEeCCceEEEEeccccccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKAR-----HGEVRAILAH------DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h-----~~~v~~i~~~------~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 70 (358)
+++++.++.|++||+.+++.+..+..| ...|.++++. +.+|++|+.||.|++||+.+++.+.
T Consensus 37 ~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~------- 109 (366)
T 3k26_A 37 VFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIK------- 109 (366)
T ss_dssp EEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEE-------
T ss_pred EEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEee-------
Confidence 567777889999999988877777654 4679888773 4589999999999999998776542
Q ss_pred CCCceeeeecCCCccccCCCceEEEEEeC-CCCEEEEEecCCeEEEEEccCCcccccccc---cccccCeEEEEEcCCCC
Q 038537 71 PRRSSFLSFSKSNTQQQHRDCVSCMAFYH-AEGLLYTGSFDKTVKAWRVLDKRCTCVDSF---VAHESNVNAIVVNQDDG 146 (358)
Q Consensus 71 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~ 146 (358)
.+.+|...|.+++|+| ++.+|++|+.||.|++||+++++ .+..+ ..|...|.+++|+|+++
T Consensus 110 -------------~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (366)
T 3k26_A 110 -------------HYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT--LVAIFGGVEGHRDEVLSADYDLLGE 174 (366)
T ss_dssp -------------EEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE--EEEEECSTTSCSSCEEEEEECTTSS
T ss_pred -------------eecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe--EEEEecccccccCceeEEEECCCCC
Confidence 3367999999999999 89999999999999999999887 55555 67999999999999999
Q ss_pred EEEEEeCCCcEEEEEceecCCccee------------------------eeeecccCCceeEEEEeecCCCcEEEEeecC
Q 038537 147 FVFTCSSDGSVKIWRRVYRENSHTL------------------------TMTLKFQQSSVNALALSSFFDNYFLYSGSSD 202 (358)
Q Consensus 147 ~l~~~~~dg~i~~wd~~~~~~~~~~------------------------~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d 202 (358)
+|++++.||.|++||+++++....+ ......|...|.+++|+ ++++++++.|
T Consensus 175 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~d 250 (366)
T 3k26_A 175 KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL----GDLILSKSCE 250 (366)
T ss_dssp EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE----TTEEEEECSS
T ss_pred EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc----CCEEEEEecC
Confidence 9999999999999999765322111 11223388899999997 5699999999
Q ss_pred CcEEEEEccCCcCCc----------cccceeeccccee--EEEeee--CCEEEEeeCCCeEEEEEcCCCceeeeeeeeec
Q 038537 203 GSINFWEKDKMSGGF----------NHGGFLQGHCFAV--LCLVAI--EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLD 268 (358)
Q Consensus 203 g~i~i~d~~~~~~~~----------~~~~~~~~~~~~~--~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 268 (358)
+.|++||+++..... .....+..|...+ ++++++ +++|++|+.||.|++||+.+++........+.
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 330 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT 330 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEc
Confidence 999999998754311 1123344454444 456677 99999999999999999998865444556777
Q ss_pred Cc--ccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 269 GH--RGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 269 ~h--~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
+| ...|++++|+|+ +++|++++.||.|++||+.
T Consensus 331 ~~~~~~~v~~~~~s~~------~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 331 HHKCGAAIRQTSFSRD------SSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTCCSCEEEEEECTT------SSEEEEEETTSEEEEEEC-
T ss_pred ccccCCceEEEEeCCC------CCeEEEEeCCCEEEEEEec
Confidence 77 799999999999 8899999999999999985
No 31
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.9e-40 Score=278.61 Aligned_cols=268 Identities=18% Similarity=0.206 Sum_probs=191.3
Q ss_pred EeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeC------CceEEEEecccccccccccccccCCCc
Q 038537 3 FTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNK------DCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 3 ~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
+.++.+.....|+++... ..+|...|.+++| +|.+|++|+. |+.|++|+..++........
T Consensus 20 ~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~------- 88 (357)
T 4g56_B 20 FQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT------- 88 (357)
T ss_dssp ------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS-------
T ss_pred EecCCCccccccCCCCCC----cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec-------
Confidence 344445666777765433 3579999999877 6889999997 78899999877654332221
Q ss_pred eeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccc--cccccccCeEEEEEcCCCCEEEEEe
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVD--SFVAHESNVNAIVVNQDDGFVFTCS 152 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~ 152 (358)
...+|...|.+++|+|++. +++++.||+|++||+.+++..... ...+|...|.+++|+|++++|++++
T Consensus 89 ---------~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs 158 (357)
T 4g56_B 89 ---------AGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG 158 (357)
T ss_dssp ---------EEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE
T ss_pred ---------ccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe
Confidence 2257889999999999976 556788999999999887633332 2347899999999999999999999
Q ss_pred CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCC-cEEEEeecCCcEEEEEccCCcCCccccceeecccceeE
Q 038537 153 SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDN-YFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL 231 (358)
Q Consensus 153 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 231 (358)
.|+.|++||++++ .....+..|...|.+++|++ ++ .++++++.||.|++||+++....... ....+...+.
T Consensus 159 ~dg~v~iwd~~~~----~~~~~~~~h~~~v~~v~~s~--~~~~~~~s~~~dg~v~~wd~~~~~~~~~~--~~~~~~~~v~ 230 (357)
T 4g56_B 159 KDFSVKVWDLSQK----AVLKSYNAHSSEVNCVAACP--GKDTIFLSCGEDGRILLWDTRKPKPATRI--DFCASDTIPT 230 (357)
T ss_dssp TTSCEEEEETTTT----EEEEEECCCSSCEEEEEECT--TCSSCEEEEETTSCEEECCTTSSSCBCBC--CCTTCCSCEE
T ss_pred CCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEcc--CCCceeeeeccCCceEEEECCCCceeeee--eecccccccc
Confidence 9999999999544 45566778999999999998 54 57899999999999999885433222 1233444454
Q ss_pred E--Eeee-CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 232 C--LVAI-EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 232 ~--~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+ ++|+ +.+|++|+.|+.|++||++++ +++..+.+|...|++++|+|++ +.+|++|+.||+|+|||++.
T Consensus 231 ~v~~sp~~~~~la~g~~d~~i~~wd~~~~----~~~~~~~~~~~~v~~l~~sp~~-----~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 231 SVTWHPEKDDTFACGDETGNVSLVNIKNP----DSAQTSAVHSQNITGLAYSYHS-----SPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp EEEECTTSTTEEEEEESSSCEEEEESSCG----GGCEEECCCSSCEEEEEECSSS-----SCCEEEEETTSCEEEECTTS
T ss_pred chhhhhcccceEEEeecccceeEEECCCC----cEeEEEeccceeEEEEEEcCCC-----CCEEEEEeCCCEEEEEECCC
Confidence 4 4555 578999999999999999988 5677888999999999999983 26899999999999999874
No 32
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.2e-39 Score=300.11 Aligned_cols=267 Identities=19% Similarity=0.313 Sum_probs=213.2
Q ss_pred CEEeeeCCCcEEEEeCCC-----ceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCC
Q 038537 1 MVFTGSSSTRIRVWRQPD-----CVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~-----~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
+|+||+.||+|++|++.+ +.....+.+|...|.++.+ ++++|++|+.||+|++||+.++....
T Consensus 397 ~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~---------- 466 (694)
T 3dm0_A 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR---------- 466 (694)
T ss_dssp EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----------
T ss_pred EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee----------
Confidence 489999999999999865 3445678999999999877 57899999999999999998765442
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccc-ccccccccccCeEEEEEcCCC--CEEEE
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCT-CVDSFVAHESNVNAIVVNQDD--GFVFT 150 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~--~~l~~ 150 (358)
.+.+|...|.+++|+|++++|++|+.|++|++||....... ......+|...|.+++|+|++ ..+++
T Consensus 467 ----------~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 536 (694)
T 3dm0_A 467 ----------RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS 536 (694)
T ss_dssp ----------EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEE
T ss_pred ----------EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEE
Confidence 34689999999999999999999999999999998654311 122235788999999999986 58999
Q ss_pred EeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee
Q 038537 151 CSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV 230 (358)
Q Consensus 151 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 230 (358)
++.|+.|++||++.. .....+..|...|.+++|+| ++.+|++|+.||.|++||+++....... ........
T Consensus 537 ~s~d~~v~vwd~~~~----~~~~~~~~h~~~v~~v~~sp--dg~~l~sg~~Dg~i~iwd~~~~~~~~~~---~~~~~v~~ 607 (694)
T 3dm0_A 537 ASWDKTVKVWNLSNC----KLRSTLAGHTGYVSTVAVSP--DGSLCASGGKDGVVLLWDLAEGKKLYSL---EANSVIHA 607 (694)
T ss_dssp EETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECT--TSSEEEEEETTSBCEEEETTTTEEEECC---BCSSCEEE
T ss_pred EeCCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCceEEEe---cCCCcEEE
Confidence 999999999999644 34556778999999999998 9999999999999999999875432221 11222344
Q ss_pred EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCc-------------------ccceEEEEeecccceeeeCeE
Q 038537 231 LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGH-------------------RGPVRCLAASLEMEKVVMGFL 291 (358)
Q Consensus 231 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h-------------------~~~v~~i~~~~~~~~~~~~~~ 291 (358)
++++|++.++++++ ++.|++||+.+++. +..+..+ ...+++++|+|+ +.+
T Consensus 608 ~~~sp~~~~l~~~~-~~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spd------g~~ 676 (694)
T 3dm0_A 608 LCFSPNRYWLCAAT-EHGIKIWDLESKSI----VEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSAD------GST 676 (694)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEE----EEEECCCCC----------------CCCCEEEEEECTT------SSE
T ss_pred EEEcCCCcEEEEEc-CCCEEEEECCCCCC----hhhhccccccccccccccccccCCceeEEeeeEEEcCC------CCE
Confidence 66777877777765 56699999998843 3333221 124789999999 889
Q ss_pred EEEccCCCcEEEEEee
Q 038537 292 VYSSSLDQTFKVWRVK 307 (358)
Q Consensus 292 l~s~~~dg~v~iw~~~ 307 (358)
|++|+.||.|++|++.
T Consensus 677 l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 677 LFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEETTSEEEEEEC-
T ss_pred EEEEcCCCeEEEEecc
Confidence 9999999999999986
No 33
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.9e-39 Score=272.81 Aligned_cols=255 Identities=18% Similarity=0.264 Sum_probs=201.2
Q ss_pred eeeeeeeecccceEEEEe--------cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCc
Q 038537 20 VERGFIKARHGEVRAILA--------HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDC 91 (358)
Q Consensus 20 ~~~~~~~~h~~~v~~i~~--------~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 91 (358)
+....+.+|.+.|.++.+ ++.+|++|+.|++|++||+...+...... .+...+.+|...
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~-------------~~~~~l~~h~~~ 78 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFG-------------IPHKALTGHNHF 78 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSE-------------EEEEEECCCSSC
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccc-------------cccchhccCCCc
Confidence 456788999999999977 57799999999999999997653211100 001245789999
Q ss_pred eEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCccee
Q 038537 92 VSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTL 171 (358)
Q Consensus 92 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 171 (358)
|.+++|+|++.+|++|+.|++|++||+++++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+.... ...
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~--~~~ 154 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGT--TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC--KFS 154 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTSSC--EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE--EEE
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCc--EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc--eee
Confidence 9999999999999999999999999999887 777888999999999999999999999999999999985221 111
Q ss_pred eeeecccCCceeEEEEeecCCC----------cEEEEeecCCcEEEEEccCCcCCccccceeecccceeEE--EeeeCCE
Q 038537 172 TMTLKFQQSSVNALALSSFFDN----------YFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKL 239 (358)
Q Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 239 (358)
......|...|.+++|+| ++ .+|++++.||.|++||... .....+.+|...+.+ ++|++++
T Consensus 155 ~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-----~~~~~~~~h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 155 SAEKENHSDWVSCVRYSP--IMKSANKVQPFAPYFASVGWDGRLKVWNTNF-----QIRYTFKAHESNVNHLSISPNGKY 227 (343)
T ss_dssp CCTTTSCSSCEEEEEECC--CCCSCSCCCSSCCEEEEEETTSEEEEEETTT-----EEEEEEECCSSCEEEEEECTTSSE
T ss_pred eecccCCCceeeeeeecc--ccccccccCCCCCEEEEEcCCCEEEEEcCCC-----ceeEEEcCccccceEEEECCCCCE
Confidence 122236788999999998 44 7999999999999999543 333446677777755 5568899
Q ss_pred EEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 240 IFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 240 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
|++|+.||.|++||+.... .+...+ .+...|.+++|+|+ +.+++++ .|+.|++|++...
T Consensus 228 l~sgs~dg~v~iwd~~~~~---~~~~~~-~~~~~v~~v~~sp~------~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 228 IATGGKDKKLLIWDILNLT---YPQREF-DAGSTINQIAFNPK------LQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp EEEEETTCEEEEEESSCCS---SCSEEE-ECSSCEEEEEECSS------SCEEEEE-ESSCEEEEESSSC
T ss_pred EEEEcCCCeEEEEECCCCc---ccceee-cCCCcEEEEEECCC------CCEEEEE-CCCCEEEEEeCCC
Confidence 9999999999999995542 222333 34567999999999 6677654 6888999999754
No 34
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.2e-39 Score=281.60 Aligned_cols=259 Identities=27% Similarity=0.464 Sum_probs=227.4
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
+|++|+.||.|++||+.+++.+..+.+|.+.|.++.++++++++|+.||+|++||+.+++...
T Consensus 131 ~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----------------- 193 (445)
T 2ovr_B 131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIH----------------- 193 (445)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEE-----------------
T ss_pred EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEE-----------------
Confidence 478999999999999999999999999999999999999999999999999999998775542
Q ss_pred CCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW 160 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 160 (358)
.+.+|...|.+++|+ ++.+++|+.||.|++||+.+++ .+..+..|...|.++++ +++.+++++.||.|++|
T Consensus 194 ---~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iw 264 (445)
T 2ovr_B 194 ---TLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ--CLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVW 264 (445)
T ss_dssp ---EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC--EEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEE
T ss_pred ---EECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc--EEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEE
Confidence 336799999999995 5689999999999999999887 67788899999999999 68899999999999999
Q ss_pred EceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEE
Q 038537 161 RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLI 240 (358)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (358)
|+++++ ....+..|...|.++.+ ++.++++++.||.|++||+++. .....+.+|...+.++.++++++
T Consensus 265 d~~~~~----~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~~l 332 (445)
T 2ovr_B 265 DPETET----CLHTLQGHTNRVYSLQF----DGIHVVSGSLDTSIRVWDVETG----NCIHTLTGHQSLTSGMELKDNIL 332 (445)
T ss_dssp EGGGTE----EEEEECCCSSCEEEEEE----CSSEEEEEETTSCEEEEETTTC----CEEEEECCCCSCEEEEEEETTEE
T ss_pred ECCCCc----EeEEecCCCCceEEEEE----CCCEEEEEeCCCeEEEEECCCC----CEEEEEcCCcccEEEEEEeCCEE
Confidence 996543 44556678899999988 6789999999999999999883 33445678888999999999999
Q ss_pred EEeeCCCeEEEEEcCCCceeeeeeeeecC---cccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 241 FSGSEDTTIRVWRRAEGGCYHECLAVLDG---HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 241 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
++|+.||.|++||+.++ +++..+.+ |...|++++|++ .+|++|+.||.|++||+++.
T Consensus 333 ~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~--------~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTG----QCLQTLQGPNKHQSAVTCLQFNK--------NFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp EEEETTSCEEEEETTTC----CEEEEECSTTSCSSCEEEEEECS--------SEEEEEETTSEEEEEETTTC
T ss_pred EEEeCCCeEEEEECCCC----cEEEEEccCCCCCCCEEEEEECC--------CEEEEEeCCCeEEEEECCCC
Confidence 99999999999999988 45666665 889999999964 49999999999999999753
No 35
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2e-39 Score=292.91 Aligned_cols=271 Identities=26% Similarity=0.396 Sum_probs=227.8
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++++.|+.|++||. +++....+.+|...|.++++ ++..|++++.||.|++||+......
T Consensus 276 ~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~---------------- 338 (577)
T 2ymu_A 276 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ---------------- 338 (577)
T ss_dssp EEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE----------------
T ss_pred EEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE----------------
Confidence 3789999999999996 45677888999999999877 5779999999999999998654321
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
.+.+|...|.+++|+|+++.|++|+.|+.|++||.. ++ .+..+..|...|.+++|+|++++|++++.|+.|+
T Consensus 339 -----~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~--~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~ 410 (577)
T 2ymu_A 339 -----TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQ--LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 410 (577)
T ss_dssp -----EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CC--EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEE
T ss_pred -----EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CC--EEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEE
Confidence 236788999999999999999999999999999964 34 5677888999999999999999999999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeE--EEeee
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL--CLVAI 236 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 236 (358)
+||.. ......+..|...|.+++|+| ++.+|++++.|+.|++||... .....+.+|...+. +++|+
T Consensus 411 ~~~~~-----~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~d~~v~~w~~~~-----~~~~~~~~~~~~v~~~~~spd 478 (577)
T 2ymu_A 411 LWNRN-----GQLLQTLTGHSSSVWGVAFSP--DDQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFSPD 478 (577)
T ss_dssp EECTT-----CCEEEEEECCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTS-----CEEEEEECCSSCEEEEEECTT
T ss_pred EEeCC-----CCEEEEecCCCCCeEEEEECC--CCCEEEEEcCCCEEEEEECCC-----CEEEEEcCCCCCEEEEEEcCC
Confidence 99952 234456678999999999998 999999999999999999754 33445667777765 45678
Q ss_pred CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCccee
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTM 316 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 316 (358)
+++|++++.|+.|++||.. + +++..+.+|...|++++|+|+ +++|++++.||.|++||.. ..
T Consensus 479 ~~~las~~~d~~i~iw~~~-~----~~~~~~~~h~~~v~~l~~s~d------g~~l~s~~~dg~v~lwd~~-------~~ 540 (577)
T 2ymu_A 479 GQTIASASDDKTVKLWNRN-G----QLLQTLTGHSSSVRGVAFSPD------GQTIASASDDKTVKLWNRN-------GQ 540 (577)
T ss_dssp SCEEEEEETTSEEEEEETT-S----CEEEEEECCSSCEEEEEECTT------SSCEEEEETTSEEEEECTT-------SC
T ss_pred CCEEEEEeCCCEEEEEcCC-C----CEEEEEeCCCCCEEEEEEcCC------CCEEEEEECcCEEEEEeCC-------CC
Confidence 9999999999999999964 4 567788899999999999999 8899999999999999853 23
Q ss_pred ecccccCCCC
Q 038537 317 CLDYSDYHSN 326 (358)
Q Consensus 317 ~~~~~~~~~~ 326 (358)
++..+.+|..
T Consensus 541 ~~~~~~~h~~ 550 (577)
T 2ymu_A 541 LLQTLTGHSS 550 (577)
T ss_dssp EEEEEECCSS
T ss_pred EEEEEcCCCC
Confidence 4455555543
No 36
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=4.7e-39 Score=282.83 Aligned_cols=264 Identities=19% Similarity=0.289 Sum_probs=224.9
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec-CCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
+|++|+.||.|++||+.+++.+..+.+|.+.|.++.+. ++.+++|+.||+|++||+.+++...
T Consensus 134 ~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~---------------- 197 (464)
T 3v7d_B 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTH---------------- 197 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEE----------------
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEE----------------
Confidence 48999999999999999999999999999999999985 4499999999999999998776442
Q ss_pred cCCCccccCCCceEEEEEe--CCCCEEEEEecCCeEEEEEccCCccc---------------------ccccccccccCe
Q 038537 80 SKSNTQQQHRDCVSCMAFY--HAEGLLYTGSFDKTVKAWRVLDKRCT---------------------CVDSFVAHESNV 136 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~---------------------~~~~~~~~~~~v 136 (358)
.+.+|...|.+++|+ +++.+|++|+.||.|++||+.+.... ....+.+|...|
T Consensus 198 ----~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 273 (464)
T 3v7d_B 198 ----VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273 (464)
T ss_dssp ----EECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE
T ss_pred ----EECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE
Confidence 336799999999998 57789999999999999999876521 133456788888
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCC
Q 038537 137 NAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGG 216 (358)
Q Consensus 137 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 216 (358)
.++ +++++++++++.||.|++||++++ .....+..|...|.+++|+| ++.++++|+.||.|++||++++
T Consensus 274 ~~~--~~~~~~l~~~~~d~~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~sg~~dg~i~vwd~~~~--- 342 (464)
T 3v7d_B 274 RTV--SGHGNIVVSGSYDNTLIVWDVAQM----KCLYILSGHTDRIYSTIYDH--ERKRCISASMDTTIRIWDLENG--- 342 (464)
T ss_dssp EEE--EEETTEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEET--TTTEEEEEETTSCEEEEETTTT---
T ss_pred EEE--cCCCCEEEEEeCCCeEEEEECCCC----cEEEEecCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC---
Confidence 887 567899999999999999999543 34556677899999999998 9999999999999999999873
Q ss_pred ccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEcc
Q 038537 217 FNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSS 296 (358)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~ 296 (358)
.....+.+|...+.++.+++++|++++.||.|++||+.+.. ..... .|...+..++|+|+ +.+|++++
T Consensus 343 -~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~----~~~~~-~~~~~~~~~~~~~~------~~~l~~~~ 410 (464)
T 3v7d_B 343 -ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS----RKFSY-HHTNLSAITTFYVS------DNILVSGS 410 (464)
T ss_dssp -EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCC----EEEEE-ECTTCCCEEEEEEC------SSEEEEEE
T ss_pred -cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc----eeeee-cCCCCccEEEEEeC------CCEEEEec
Confidence 34455778999999999999999999999999999999874 22222 36677888999999 88999998
Q ss_pred CCCcEEEEEeee
Q 038537 297 LDQTFKVWRVKV 308 (358)
Q Consensus 297 ~dg~v~iw~~~~ 308 (358)
||.|++||+++
T Consensus 411 -dg~i~iwd~~~ 421 (464)
T 3v7d_B 411 -ENQFNIYNLRS 421 (464)
T ss_dssp -TTEEEEEETTT
T ss_pred -CCeEEEEECCC
Confidence 89999999984
No 37
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.9e-39 Score=268.02 Aligned_cols=251 Identities=20% Similarity=0.310 Sum_probs=206.7
Q ss_pred eeeeeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEE
Q 038537 20 VERGFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMA 96 (358)
Q Consensus 20 ~~~~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 96 (358)
.+...+.+|.+.|.++++. +++|++|+.|++|++|++.......... ...+.+|...|.+++
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~---------------~~~~~~h~~~v~~~~ 72 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP---------------VRSFKGHSHIVQDCT 72 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEE---------------EEEEECCSSCEEEEE
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccccc---------------ceEEeCCcccEEEEE
Confidence 4557789999999999884 3699999999999999987543211111 124578999999999
Q ss_pred EeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeec
Q 038537 97 FYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLK 176 (358)
Q Consensus 97 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 176 (358)
|+|++++|++|+.|++|++||+.+++ .+..+.+|...|.+++|+|++.+|++|+.|+.|++||++. .....+.
T Consensus 73 ~s~dg~~l~s~s~D~~v~~wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-----~~~~~~~ 145 (319)
T 3frx_A 73 LTADGAYALSASWDKTLRLWDVATGE--TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-----QCLATLL 145 (319)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-----CEEEEEC
T ss_pred ECCCCCEEEEEeCCCEEEEEECCCCC--eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----CeEEEEe
Confidence 99999999999999999999999988 7788889999999999999999999999999999999852 2345566
Q ss_pred ccCCceeEEEEeecC----CCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEE--EeeeCCEEEEeeCCCeEE
Q 038537 177 FQQSSVNALALSSFF----DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSEDTTIR 250 (358)
Q Consensus 177 ~~~~~i~~~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~ 250 (358)
+|...+.++.+.|.. ++..+++++.|+.|++||++.. .....+.+|...+.+ ++|++++|++|+.||.|+
T Consensus 146 ~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~----~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~ 221 (319)
T 3frx_A 146 GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF----QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221 (319)
T ss_dssp CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTT----EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc----hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Confidence 789999999998731 3458999999999999999873 334446677777755 466889999999999999
Q ss_pred EEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 251 VWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 251 iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+||+.++ +.+..+.. ...|.+++|+|+ +.+|++++.+ .+++|+++.
T Consensus 222 iwd~~~~----~~~~~~~~-~~~v~~~~~sp~------~~~la~~~~~-~i~v~~~~~ 267 (319)
T 3frx_A 222 LWNLAAK----KAMYTLSA-QDEVFSLAFSPN------RYWLAAATAT-GIKVFSLDP 267 (319)
T ss_dssp EEETTTT----EEEEEEEC-CSCEEEEEECSS------SSEEEEEETT-EEEEEEETT
T ss_pred EEECCCC----cEEEEecC-CCcEEEEEEcCC------CCEEEEEcCC-CcEEEEeCc
Confidence 9999998 45666654 468999999999 7888888755 599999873
No 38
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=8.1e-39 Score=270.91 Aligned_cols=251 Identities=18% Similarity=0.224 Sum_probs=208.6
Q ss_pred eeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEE
Q 038537 20 VERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAF 97 (358)
Q Consensus 20 ~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 97 (358)
+....+.+|.+.|.++.+ ++.+|++|+.||+|++||..+.+... .+..|...|.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~--------------------~~~~~~~~v~~~~~ 114 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH--------------------AVTMPCTWVMACAY 114 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--------------------EEECSSSCCCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce--------------------EEecCCCCEEEEEE
Confidence 456788999999999988 57799999999999999987665432 22467788999999
Q ss_pred eCCCCEEEEEecCCeEEEEEccCCc----ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeee
Q 038537 98 YHAEGLLYTGSFDKTVKAWRVLDKR----CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTM 173 (358)
Q Consensus 98 ~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 173 (358)
+|++..|++|+.|+.+++|++.... ......+..|...|.+++|+|++..|++++.|+.|++||+++++ ...
T Consensus 115 sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~----~~~ 190 (354)
T 2pbi_B 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ----LLQ 190 (354)
T ss_dssp CTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC----EEE
T ss_pred CCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe----EEE
Confidence 9999999999999999999986532 12345566899999999999999999999999999999996543 455
Q ss_pred eecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eeeCCEEEEeeCCCeEEE
Q 038537 174 TLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAIEKLIFSGSEDTTIRV 251 (358)
Q Consensus 174 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~i 251 (358)
.+.+|...|.+++++|.+++++|++|+.||.|++||+++.. ....+.+|...+.++ +|++++|++|+.|+.|++
T Consensus 191 ~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~----~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~l 266 (354)
T 2pbi_B 191 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ----CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266 (354)
T ss_dssp EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc----EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEE
Confidence 66789999999999986678899999999999999998743 344466777777554 567899999999999999
Q ss_pred EEcCCCceeeeeeeeecC--cccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 252 WRRAEGGCYHECLAVLDG--HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 252 wd~~~~~~~~~~~~~~~~--h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
||++..+ .+..+.. +...+++++|+|+ +.+|++|+.|+.|++||+..
T Consensus 267 wd~~~~~----~~~~~~~~~~~~~~~~~~~s~~------g~~l~~g~~d~~i~vwd~~~ 315 (354)
T 2pbi_B 267 YDLRADR----EVAIYSKESIIFGASSVDFSLS------GRLLFAGYNDYTINVWDVLK 315 (354)
T ss_dssp EETTTTE----EEEEECCTTCCSCEEEEEECTT------SSEEEEEETTSCEEEEETTT
T ss_pred EECCCCc----EEEEEcCCCcccceeEEEEeCC------CCEEEEEECCCcEEEEECCC
Confidence 9999873 3444433 3457899999999 88999999999999999863
No 39
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.8e-39 Score=276.09 Aligned_cols=279 Identities=14% Similarity=0.157 Sum_probs=222.2
Q ss_pred CEEeeeCCCcEEEEeCCCce--eeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 1 MVFTGSSSTRIRVWRQPDCV--ERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~--~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
+|++|+.||.|++||+.+++ .+..+.+|...|.++.+ ++++|++++.||.|++||+.+++.....
T Consensus 22 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----------- 90 (372)
T 1k8k_C 22 QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL----------- 90 (372)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE-----------
T ss_pred EEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeE-----------
Confidence 47899999999999999887 88899999999999977 5789999999999999999876532211
Q ss_pred eeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccc--ccccccccccCeEEEEEcCCCCEEEEEeCC
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCT--CVDSFVAHESNVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 154 (358)
.+..|...|.+++|+|++++|++++.|+.|++||+...... .......|...|.+++|+|++++|++++.|
T Consensus 91 -------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 163 (372)
T 1k8k_C 91 -------VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCD 163 (372)
T ss_dssp -------ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETT
T ss_pred -------EeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCC
Confidence 22568889999999999999999999999999999876521 122235688999999999999999999999
Q ss_pred CcEEEEEceecC--------------CcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccc
Q 038537 155 GSVKIWRRVYRE--------------NSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG 220 (358)
Q Consensus 155 g~i~~wd~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 220 (358)
|.|++||++... ........+..|...+.+++|+| ++.+|++++.||.|++||+++.. ..
T Consensus 164 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~----~~ 237 (372)
T 1k8k_C 164 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA--NGSRVAWVSHDSTVCLADADKKM----AV 237 (372)
T ss_dssp SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS--SSSEEEEEETTTEEEEEEGGGTT----EE
T ss_pred CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC--CCCEEEEEeCCCEEEEEECCCCc----ee
Confidence 999999975321 12344555667889999999998 89999999999999999998743 33
Q ss_pred ceeecccceeE--EEeeeCCEEEEeeCCCeEEEEEcCC--Ccee----------------------------eeee----
Q 038537 221 GFLQGHCFAVL--CLVAIEKLIFSGSEDTTIRVWRRAE--GGCY----------------------------HECL---- 264 (358)
Q Consensus 221 ~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~----------------------------~~~~---- 264 (358)
..+..|...+. ++++++.++++| .|+.|++|++.. ++.. .+..
T Consensus 238 ~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (372)
T 1k8k_C 238 ATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA 316 (372)
T ss_dssp EEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC-------
T ss_pred EEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcc
Confidence 44556665554 456677888877 899999999987 4210 0000
Q ss_pred --eee-cCcccceEEEEeecccceeeeC---eEEEEccCCCcEEEEEeeeC
Q 038537 265 --AVL-DGHRGPVRCLAASLEMEKVVMG---FLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 265 --~~~-~~h~~~v~~i~~~~~~~~~~~~---~~l~s~~~dg~v~iw~~~~~ 309 (358)
..+ .+|..+|++++|++.. + .+|+||+.||.|++||+++.
T Consensus 317 ~~~~~~~~h~~~v~~~~~~~~~-----g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 317 AGAGLDSLHKNSVSQISVLSGG-----KAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp --CCCSSSSSSCEEEEEEEEST-----TTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ccccccccccCCcceeEEecCC-----CcceeeEEEecCCCceEEEEecCh
Confidence 223 4899999999977541 5 79999999999999999853
No 40
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=9.5e-39 Score=279.34 Aligned_cols=261 Identities=23% Similarity=0.410 Sum_probs=226.8
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
+|++|+.||.|++||+.+++.+..+.+|...|.++.++++.+++|+.||.|++||+.+++...
T Consensus 171 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----------------- 233 (445)
T 2ovr_B 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH----------------- 233 (445)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEE-----------------
T ss_pred EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEE-----------------
Confidence 479999999999999999999999999999999999999999999999999999998776542
Q ss_pred CCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW 160 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 160 (358)
.+.+|...|.++++ ++..+++|+.||.|++||+++++ .+..+..|...|.++.| ++.++++++.||.|++|
T Consensus 234 ---~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~ 304 (445)
T 2ovr_B 234 ---VLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVW 304 (445)
T ss_dssp ---EEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEE
T ss_pred ---EEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCc--EeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEE
Confidence 33579999999999 78899999999999999999887 77788899999999999 78999999999999999
Q ss_pred EceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceee---cccceeEEEeeeC
Q 038537 161 RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ---GHCFAVLCLVAIE 237 (358)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 237 (358)
|+++++ ....+..|...+.++.+ +++++++|+.||.|++||+++... ...+. .|...+.++.+++
T Consensus 305 d~~~~~----~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~ 372 (445)
T 2ovr_B 305 DVETGN----CIHTLTGHQSLTSGMEL----KDNILVSGNADSTVKIWDIKTGQC----LQTLQGPNKHQSAVTCLQFNK 372 (445)
T ss_dssp ETTTCC----EEEEECCCCSCEEEEEE----ETTEEEEEETTSCEEEEETTTCCE----EEEECSTTSCSSCEEEEEECS
T ss_pred ECCCCC----EEEEEcCCcccEEEEEE----eCCEEEEEeCCCeEEEEECCCCcE----EEEEccCCCCCCCEEEEEECC
Confidence 996554 34455678888888776 467999999999999999987432 22233 3778899999999
Q ss_pred CEEEEeeCCCeEEEEEcCCCceeeeeeeee-----cCcccceEEEEeecccceeeeCeEEEEccCCCc----EEEEEeee
Q 038537 238 KLIFSGSEDTTIRVWRRAEGGCYHECLAVL-----DGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQT----FKVWRVKV 308 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~----v~iw~~~~ 308 (358)
++|++|+.||.|++||+.+++ .+..+ .+|.+.|++++|+|+ +.+|++|+.||+ |.+||++.
T Consensus 373 ~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~~------~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 373 NFVITSSDDGTVKLWDLKTGE----FIRNLVTLESGGSGGVVWRIRASNT------KLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp SEEEEEETTSEEEEEETTTCC----EEEEEEECTTGGGTCEEEEEEECSS------EEEEEEECSSSSSCCEEEEEECCC
T ss_pred CEEEEEeCCCeEEEEECCCCc----eeeeeeccccCCCCceEEEEEecCC------EEEEEEcccCCCCccEEEEEECCC
Confidence 999999999999999999984 34444 478899999999999 889999999998 99999985
Q ss_pred C
Q 038537 309 M 309 (358)
Q Consensus 309 ~ 309 (358)
.
T Consensus 443 ~ 443 (445)
T 2ovr_B 443 D 443 (445)
T ss_dssp C
T ss_pred C
Confidence 3
No 41
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.1e-40 Score=287.66 Aligned_cols=274 Identities=17% Similarity=0.149 Sum_probs=205.9
Q ss_pred CEEeeeCCCcEEEEeCCCceee--eeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCce
Q 038537 1 MVFTGSSSTRIRVWRQPDCVER--GFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~--~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
+||+|+.||.|+|||+.+++.. ..+.+|.+.|.++.|+ +++|++|+.||+|++||+.+.......
T Consensus 134 ~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~---------- 203 (435)
T 4e54_B 134 TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFA---------- 203 (435)
T ss_dssp CEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEE----------
T ss_pred EEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEe----------
Confidence 5899999999999999876543 4456899999999884 679999999999999999764322110
Q ss_pred eeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCC-EEEEEeCC
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDG-FVFTCSSD 154 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d 154 (358)
....+...+.+++|+|++.+|++|+.||.|++||++.. .+..+..|...|.+++|+|++. ++++++.|
T Consensus 204 --------~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~---~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d 272 (435)
T 4e54_B 204 --------SSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK---ELWNLRMHKKKVTHVALNPCCDWFLATASVD 272 (435)
T ss_dssp --------CCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC---BCCCSBCCSSCEEEEEECTTCSSEEEEEETT
T ss_pred --------ccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc---eeEEEecccceEEeeeecCCCceEEEEecCc
Confidence 11344556889999999999999999999999998754 4677889999999999999876 78899999
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec---ccce-e
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG---HCFA-V 230 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~~~~-~ 230 (358)
+.|++||++.......+ .....|...|.+++|+| ++.+|++++.||.|++||+++............. +... -
T Consensus 273 ~~v~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~sp--dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASF-LYSLPHRHPVNAACFSP--DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIK 349 (435)
T ss_dssp SBCCEEETTTCCSSSCC-SBCCBCSSCEEECCBCT--TSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCB
T ss_pred ceeeEEecccccccceE-EEeeeccccccceeECC--CCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEE
Confidence 99999999766544333 23456889999999998 9999999999999999999874432221110000 0000 1
Q ss_pred EEEeeeCCEEEEe------------eCCCeEEEEEcCCCceeeeeeeee-cCcccceEEE-EeecccceeeeCeEEEEcc
Q 038537 231 LCLVAIEKLIFSG------------SEDTTIRVWRRAEGGCYHECLAVL-DGHRGPVRCL-AASLEMEKVVMGFLVYSSS 296 (358)
Q Consensus 231 ~~~~~~~~~l~~~------------~~dg~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~i-~~~~~~~~~~~~~~l~s~~ 296 (358)
..+++++.+++++ ..++.|++||..+++ .+..+ .+|...|.++ +|+|+ +.+|++|+
T Consensus 350 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~----~~~~l~~~~~~~v~s~~~fspd------g~~lasg~ 419 (435)
T 4e54_B 350 AAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK----MMCQLYDPESSGISSLNEFNPM------GDTLASAM 419 (435)
T ss_dssp CEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC----EEEEECCSSCCCCCCEEEECTT------SSCEEEEC
T ss_pred EEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc----EEEEEeCCCCCcEEEEEEECCC------CCEEEEEc
Confidence 2233333333333 244679999999984 44444 4788889887 69999 88999876
Q ss_pred CCCcEEEEEeeeC
Q 038537 297 LDQTFKVWRVKVM 309 (358)
Q Consensus 297 ~dg~v~iw~~~~~ 309 (358)
|+.|+||+++..
T Consensus 420 -d~~i~iW~~~~g 431 (435)
T 4e54_B 420 -GYHILIWSQQEA 431 (435)
T ss_dssp -SSEEEECCCC--
T ss_pred -CCcEEEEECCcC
Confidence 789999999853
No 42
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-39 Score=272.45 Aligned_cols=269 Identities=14% Similarity=0.233 Sum_probs=227.2
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++|+.||.|++||+.+++.+..+.+|...|.++.++ +++|++++.||.|++||+.+++....
T Consensus 46 ~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------------- 111 (369)
T 3zwl_B 46 LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT-------------- 111 (369)
T ss_dssp EEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE--------------
T ss_pred EEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE--------------
Confidence 48899999999999999999999999999999999884 77999999999999999988765432
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecC-----CeEEEEEccCCccc---------cccccccccc--CeEEEEEc
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD-----KTVKAWRVLDKRCT---------CVDSFVAHES--NVNAIVVN 142 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~---------~~~~~~~~~~--~v~~~~~~ 142 (358)
..|...|.+++|+|++++|++++.+ +.|++||+...... ....+..|.. .+.+++|+
T Consensus 112 -------~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (369)
T 3zwl_B 112 -------WKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS 184 (369)
T ss_dssp -------EECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred -------eecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence 2367789999999999999999999 99999999876421 2233344555 89999999
Q ss_pred CCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccce
Q 038537 143 QDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF 222 (358)
Q Consensus 143 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 222 (358)
|+++++++++.||.|++||+++. ......+..|...|.+++|+| ++.+|++++.||.|++||+++.......
T Consensus 185 ~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~--- 256 (369)
T 3zwl_B 185 TKGKYIIAGHKDGKISKYDVSNN---YEYVDSIDLHEKSISDMQFSP--DLTYFITSSRDTNSFLVDVSTLQVLKKY--- 256 (369)
T ss_dssp GGGCEEEEEETTSEEEEEETTTT---TEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEE---
T ss_pred CCCCEEEEEcCCCEEEEEECCCC---cEeEEEEecCCCceeEEEECC--CCCEEEEecCCceEEEEECCCCceeeee---
Confidence 99999999999999999999642 344556677899999999998 9999999999999999999874322221
Q ss_pred eecccceeEEEeeeCCEEEEeeCCC--------------eEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeee
Q 038537 223 LQGHCFAVLCLVAIEKLIFSGSEDT--------------TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVM 288 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~ 288 (358)
.........+++++++++++++.++ .+++||..++ +++..+.+|...|++++|+|+
T Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----~~~~~~~~~~~~v~~~~~s~~------ 326 (369)
T 3zwl_B 257 ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE----EEIGRVQGHFGPLNTVAISPQ------ 326 (369)
T ss_dssp ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC----CEEEEEECCSSCEEEEEECTT------
T ss_pred cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC----cchhheecccCcEEEEEECCC------
Confidence 1223344567778899999999888 8999999998 567788899999999999999
Q ss_pred CeEEEEccCCCcEEEEEeee
Q 038537 289 GFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 289 ~~~l~s~~~dg~v~iw~~~~ 308 (358)
+.+|++++.||.|++|+++.
T Consensus 327 ~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 327 GTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp SSEEEEEETTSEEEEEEECH
T ss_pred CCEEEEEcCCCeEEEEECcc
Confidence 88999999999999999985
No 43
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=5.6e-40 Score=278.96 Aligned_cols=279 Identities=10% Similarity=0.063 Sum_probs=209.7
Q ss_pred CEEeeeCCC-------cEEEEeCCCcee----------eeeeeecccceEEEEecCCEEEEEe-----------CCceEE
Q 038537 1 MVFTGSSST-------RIRVWRQPDCVE----------RGFIKARHGEVRAILAHDNMLFTTN-----------KDCKIR 52 (358)
Q Consensus 1 ~l~tg~~dg-------~v~vw~~~~~~~----------~~~~~~h~~~v~~i~~~~~~l~s~~-----------~dg~i~ 52 (358)
+|++|+.|. .|++|++..... ...+..|...|.+++++++.+++|. .|+.++
T Consensus 28 ~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r 107 (365)
T 4h5i_A 28 LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLR 107 (365)
T ss_dssp EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEE
T ss_pred EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEE
Confidence 477776543 599999864432 1245678889999999998888764 467788
Q ss_pred EEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEE--ecCCeEEEEEccCCccccccccc
Q 038537 53 IWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTG--SFDKTVKAWRVLDKRCTCVDSFV 130 (358)
Q Consensus 53 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~ 130 (358)
+|++.......... ..........+...+.+++|+|||++++++ +.|++|++||+.+++ .+..+
T Consensus 108 ~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~--~~~~~- 173 (365)
T 4h5i_A 108 KFKYDKVNDQLEFL-----------TSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT--EKFEI- 173 (365)
T ss_dssp EEEEETTTTEEEEE-----------EEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE--EEEEE-
T ss_pred EEEecCCCceEEEe-----------eeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc--EEEEe-
Confidence 88876543221110 000111224556679999999999987654 578999999999887 55555
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC----cEE
Q 038537 131 AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG----SIN 206 (358)
Q Consensus 131 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg----~i~ 206 (358)
.|...|.+++|+|+++++++++.+ .+++|+..++... .......|...+.+++|+| ++.++++++.|+ .++
T Consensus 174 ~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~--~~~~~~~~~~~v~~v~fsp--dg~~l~~~s~d~~~~~~i~ 248 (365)
T 4h5i_A 174 ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCI--ARKTDFDKNWSLSKINFIA--DDTVLIAASLKKGKGIVLT 248 (365)
T ss_dssp ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEE--EEECCCCTTEEEEEEEEEE--TTEEEEEEEESSSCCEEEE
T ss_pred CCCCceEEEEEccCCceEEeccce-eEEEEEeccCcce--eeeecCCCCCCEEEEEEcC--CCCEEEEEecCCcceeEEe
Confidence 477889999999999999998855 5677776544322 2233456788999999999 999999999887 688
Q ss_pred EEEccCCcCCccccceeecccceeE--EEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeee-ecCcccceEEEEeeccc
Q 038537 207 FWEKDKMSGGFNHGGFLQGHCFAVL--CLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAV-LDGHRGPVRCLAASLEM 283 (358)
Q Consensus 207 i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~h~~~v~~i~~~~~~ 283 (358)
+|++............+.+|...|. +++|++++||+|+.|+.|+|||+.++ +++.. +.+|..+|++++|+|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~----~~~~~~~~gH~~~V~~v~fSpd- 323 (365)
T 4h5i_A 249 KISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL----SMSKIFKQAHSFAITEVTISPD- 323 (365)
T ss_dssp EEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT----EEEEEETTSSSSCEEEEEECTT-
T ss_pred ecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC----cEEEEecCcccCCEEEEEECCC-
Confidence 8988764433333344567776665 46778999999999999999999998 55655 5789999999999999
Q ss_pred ceeeeCeEEEEccCCCcEEEEEeee
Q 038537 284 EKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 284 ~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+++|+|||.|++|+|||+..
T Consensus 324 -----g~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 324 -----STYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp -----SCEEEEEETTSEEEEEECCT
T ss_pred -----CCEEEEEeCCCeEEEEEcCC
Confidence 89999999999999999963
No 44
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.4e-39 Score=281.11 Aligned_cols=272 Identities=15% Similarity=0.193 Sum_probs=213.7
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceE-EEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVR-AILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~-~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
+|++|+.||.|++||+.+++....+..|..... .+.+++++|++|+.||.|++||+.+++...
T Consensus 70 ~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------------- 133 (420)
T 3vl1_A 70 HLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE---------------- 133 (420)
T ss_dssp TEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE----------------
T ss_pred eEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee----------------
Confidence 489999999999999998888777776632211 224478899999999999999998665432
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
.+.+|...|++++|+|++++|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++
T Consensus 134 ----~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 207 (420)
T 3vl1_A 134 ----IDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS--NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL 207 (420)
T ss_dssp ----ETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ----ecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc--CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE
Confidence 235899999999999999999999999999999999887 67788899999999999999999999999999999
Q ss_pred EEceecCCcceeeeeecccCCceeE---------------------EEEeecCCCcEEEEeecCCcEEEEEccCCcCCcc
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNA---------------------LALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFN 218 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~---------------------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 218 (358)
||+++++....+.. ...+...+.+ ++|+| ++.+|++++.||.|++||+++......
T Consensus 208 wd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~ 284 (420)
T 3vl1_A 208 WECGTGTTIHTFNR-KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT--YGKYVIAGHVSGVITVHNVFSKEQTIQ 284 (420)
T ss_dssp EETTTTEEEEEECB-TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC--TTEEEEEEETTSCEEEEETTTCCEEEE
T ss_pred eECCCCceeEEeec-CCCCCCCccEEEEecCCcceeeecccCcccceEEcC--CCCEEEEEcCCCeEEEEECCCCceeEE
Confidence 99976543332211 1123344444 44555 889999999999999999987432222
Q ss_pred ccceeecccceeEEE--eeeCC-EEEEeeCCCeEEEEEcCCCceeeeeeeeecC-cccceEEEEeecccceeeeCeEEEE
Q 038537 219 HGGFLQGHCFAVLCL--VAIEK-LIFSGSEDTTIRVWRRAEGGCYHECLAVLDG-HRGPVRCLAASLEMEKVVMGFLVYS 294 (358)
Q Consensus 219 ~~~~~~~~~~~~~~~--~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~~~~~l~s 294 (358)
....|...+.++ +++++ +|++|+.||.|++||+++++ .++..+.+ |...|+++.+. + +.+|++
T Consensus 285 ---~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~---~~~~~~~~~~~~~v~~~~~~-~------~~~l~s 351 (420)
T 3vl1_A 285 ---LPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE---CPVGEFLINEGTPINNVYFA-A------GALFVS 351 (420)
T ss_dssp ---ECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT---SCSEEEEESTTSCEEEEEEE-T------TEEEEE
T ss_pred ---cccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc---CchhhhhccCCCCceEEEeC-C------CCEEEE
Confidence 233455566554 55666 99999999999999999874 33555555 67788888554 5 689999
Q ss_pred ccCCCcEEEEEeeeCC
Q 038537 295 SSLDQTFKVWRVKVMP 310 (358)
Q Consensus 295 ~~~dg~v~iw~~~~~~ 310 (358)
++.||.|++|++....
T Consensus 352 ~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 352 SGFDTSIKLDIISDPE 367 (420)
T ss_dssp ETTTEEEEEEEECCTT
T ss_pred ecCCccEEEEeccCCC
Confidence 9999999999998743
No 45
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=7.2e-39 Score=267.63 Aligned_cols=270 Identities=17% Similarity=0.266 Sum_probs=218.0
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeee--ecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIK--ARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~--~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
||+ +.|++|+|||+.+++.+..+. +|...|.++.+ ++++|++|+.||+|++|++.+++.+.
T Consensus 39 lAv-g~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~-------------- 103 (318)
T 4ggc_A 39 LAV-ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-------------- 103 (318)
T ss_dssp EEE-EETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--------------
T ss_pred EEE-EeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE--------------
Confidence 455 459999999999999887765 57778999987 57899999999999999999876553
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcE
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSV 157 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 157 (358)
.+.+|...+.++.+ ++..+++++.++.+++|+..... ..+..+.+|...+..+.+.++++++++++.||.|
T Consensus 104 ------~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i 174 (318)
T 4ggc_A 104 ------NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 174 (318)
T ss_dssp ------EEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ------EecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc-eeEEEEcCccCceEEEEEcCCCCEEEEEecCcce
Confidence 23578888877666 56799999999999999988765 2556678899999999999999999999999999
Q ss_pred EEEEceecCCcceeeeeecccCCceeEEEEeecCCCcE--EEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee
Q 038537 158 KIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYF--LYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA 235 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (358)
++||+++++...........+...|.++++.|. .... +++++.++.|++||.+...... ...........++.+
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~i~lwd~~~~~~~~---~~~~~~~v~~~~~~~ 250 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW-QSNVLATGGGTSDRHIRIWNVCSGACLS---AVDAHSQVCSILWSP 250 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCCCSCEEEEEECTT-STTEEEEEECTTTCEEEEEETTTCCEEE---EEECSSCEEEEEEET
T ss_pred eEEECCCCcccccceeeecccCCceEEEEecCC-CCcEEEEEecCCCCEEEEEecccccccc---cccceeeeeeeeecc
Confidence 999998877666666666778889999999982 2333 3466788999999988733211 112223334456667
Q ss_pred eCCEEEEe--eCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 236 IEKLIFSG--SEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 236 ~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
.++.++++ +.|+.|++||+.++ +++..+.+|.+.|++++|+|+ +.+|+|||.||+|+|||+...
T Consensus 251 ~~~~~~~~sg~~d~~i~iwd~~~~----~~~~~l~gH~~~V~~l~~spd------g~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 251 HYKELISGHGFAQNQLVIWKYPTM----AKVAELKGHTSRVLSLTMSPD------GATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TTTEEEEEECTTTCCEEEEETTTC----CEEEEECCCSSCEEEEEECTT------SSCEEEEETTTEEEEECCSCC
T ss_pred cccceEEEEEcCCCEEEEEECCCC----cEEEEEcCCCCCEEEEEEcCC------CCEEEEEecCCeEEEEECCCC
Confidence 77776654 48999999999998 678889999999999999999 889999999999999999753
No 46
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.7e-39 Score=266.50 Aligned_cols=262 Identities=22% Similarity=0.345 Sum_probs=212.8
Q ss_pred CceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEE
Q 038537 18 DCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCM 95 (358)
Q Consensus 18 ~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 95 (358)
.......+.+|...|.++.+ ++++|++|+.||.|++|++.+++... .+.+|...|.++
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~--------------------~~~~h~~~v~~~ 71 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--------------------TISGHKLGISDV 71 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--------------------EECCCSSCEEEE
T ss_pred CceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch--------------------hhccCCCceEEE
Confidence 34556778899999999987 57799999999999999998765432 336899999999
Q ss_pred EEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeee
Q 038537 96 AFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTL 175 (358)
Q Consensus 96 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 175 (358)
+|+|++++|++|+.|+.|++||+.+++ .+..+..|...|.+++|+|++++|++++.|+.|++||+++++ ....+
T Consensus 72 ~~~~~~~~l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~ 145 (312)
T 4ery_A 72 AWSSDSNLLVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK----CLKTL 145 (312)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC----EEEEE
T ss_pred EEcCCCCEEEEECCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE----EEEEe
Confidence 999999999999999999999999887 777888999999999999999999999999999999996543 34456
Q ss_pred cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccc--ceeEEEeeeCCEEEEeeCCCeEEEEE
Q 038537 176 KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC--FAVLCLVAIEKLIFSGSEDTTIRVWR 253 (358)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~iwd 253 (358)
..|...|.+++|+| ++.+|++++.||.|++||+++....... ...+. ....++++++++|++++.||.|++||
T Consensus 146 ~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 220 (312)
T 4ery_A 146 PAHSDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTL---IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220 (312)
T ss_dssp CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEE---CCSSCCCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred cCCCCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEE---eccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 67889999999998 8999999999999999999874322111 22233 33466778899999999999999999
Q ss_pred cCCCceeeeeeeeecCcccceEE--EEee-cccceeeeCeEEEEccCCCcEEEEEeeeCCCCcceeecccccCCCC
Q 038537 254 RAEGGCYHECLAVLDGHRGPVRC--LAAS-LEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSN 326 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~h~~~v~~--i~~~-~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~ 326 (358)
+.++ +++..+.+|...+.. ..++ ++ +.+|++|+.||.|++||++. ..++..+.+|..
T Consensus 221 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~sg~~dg~i~vwd~~~------~~~~~~~~~h~~ 280 (312)
T 4ery_A 221 YSKG----KCLKTYTGHKNEKYCIFANFSVTG------GKWIVSGSEDNLVYIWNLQT------KEIVQKLQGHTD 280 (312)
T ss_dssp TTTT----EEEEEECSSCCSSSCCCEEEECSS------SCEEEECCTTSCEEEEETTT------CCEEEEECCCSS
T ss_pred CCCC----cEEEEEEecCCceEEEEEEEEeCC------CcEEEEECCCCEEEEEECCC------chhhhhhhccCC
Confidence 9998 567777788765433 2344 44 68999999999999999974 334455555543
No 47
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-38 Score=275.28 Aligned_cols=268 Identities=19% Similarity=0.267 Sum_probs=219.7
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeee-cccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKA-RHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~-h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+++++.||.|++||+.+++....+.. |...|.++.+ ++++|++|+.||.|++||+.+++.+.
T Consensus 106 l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------- 170 (401)
T 4aez_A 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR--------------- 170 (401)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---------------
T ss_pred EEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE---------------
Confidence 68899999999999999998877776 7889999988 57799999999999999998776543
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
.+.+|...|.+++| ++..|++|+.||.|++||++... .....+..|...|.+++|+|++++|++++.||.|+
T Consensus 171 -----~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~ 242 (401)
T 4aez_A 171 -----TMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN-HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 242 (401)
T ss_dssp -----EECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS-CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred -----EecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc-ceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEE
Confidence 33579999999999 45799999999999999998543 15667788999999999999999999999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCC-cEEEEee--cCCcEEEEEccCCcCCccccceeecccceeEEEee
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDN-YFLYSGS--SDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA 235 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (358)
+||++++. ....+..|...|.+++|+| ++ .++++++ .|+.|++||+++....... .........++++
T Consensus 243 iwd~~~~~----~~~~~~~~~~~v~~~~~~p--~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~---~~~~~v~~~~~s~ 313 (401)
T 4aez_A 243 IWDARSSI----PKFTKTNHNAAVKAVAWCP--WQSNLLATGGGTMDKQIHFWNAATGARVNTV---DAGSQVTSLIWSP 313 (401)
T ss_dssp EEETTCSS----EEEEECCCSSCCCEEEECT--TSTTEEEEECCTTTCEEEEEETTTCCEEEEE---ECSSCEEEEEECS
T ss_pred EccCCCCC----ccEEecCCcceEEEEEECC--CCCCEEEEecCCCCCEEEEEECCCCCEEEEE---eCCCcEEEEEECC
Confidence 99996543 3445567899999999998 44 5666655 7999999999874322111 1122334456677
Q ss_pred eCCEEEE--eeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 236 IEKLIFS--GSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 236 ~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
+++++++ |+.||.|++||+.+++. .....+.+|...|++++|+|+ +.+|++++.||.|++|++...
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~--~~~~~~~~h~~~v~~~~~s~d------g~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGL--TKQVDIPAHDTRVLYSALSPD------GRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEE--EEEEEEECCSSCCCEEEECTT------SSEEEEECTTSEEEEEECCC-
T ss_pred CCCeEEEEeecCCCcEEEEecCCccc--eeEEEecCCCCCEEEEEECCC------CCEEEEEeCCCcEEEEECCCC
Confidence 8999998 55899999999998743 345567799999999999999 889999999999999999854
No 48
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.1e-38 Score=267.35 Aligned_cols=271 Identities=20% Similarity=0.331 Sum_probs=213.7
Q ss_pred CEEeeeCCCcEEEEeCCCc-----eeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCC
Q 038537 1 MVFTGSSSTRIRVWRQPDC-----VERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~-----~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
+|+||+.||+|+|||+.+. .+...+.+|...|.++.+ ++++|++++.|+.|++|+.........
T Consensus 53 ~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~--------- 123 (340)
T 4aow_A 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRR--------- 123 (340)
T ss_dssp EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE---------
T ss_pred EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeee---------
Confidence 4899999999999998654 356778899999999987 578999999999999999887654322
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCC--CEEEEE
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD--GFVFTC 151 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~ 151 (358)
...+...+..+.+++++..|++|+.|+.+++||+..... .......|...+..++|++++ .+++++
T Consensus 124 -----------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~s~ 191 (340)
T 4aow_A 124 -----------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK-YTVQDESHSEWVSCVRFSPNSSNPIIVSC 191 (340)
T ss_dssp -----------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSSCSSCEEEEEECSCSSSCEEEEE
T ss_pred -----------ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCce-EEEEeccccCcccceEEccCCCCcEEEEE
Confidence 245677788999999999999999999999999876552 344566789999999998854 578899
Q ss_pred eCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecc-ccee
Q 038537 152 SSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGH-CFAV 230 (358)
Q Consensus 152 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~ 230 (358)
+.|+.|++||+++. .....+..|...|.+++|+| ++++|++|+.||.|++||+++... ...+..+ ....
T Consensus 192 ~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~Dg~i~iwd~~~~~~----~~~~~~~~~v~~ 261 (340)
T 4aow_A 192 GWDKLVKVWNLANC----KLKTNHIGHTGYLNTVTVSP--DGSLCASGGKDGQAMLWDLNEGKH----LYTLDGGDIINA 261 (340)
T ss_dssp ETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECT--TSSEEEEEETTCEEEEEETTTTEE----EEEEECSSCEEE
T ss_pred cCCCEEEEEECCCC----ceeeEecCCCCcEEEEEECC--CCCEEEEEeCCCeEEEEEeccCce----eeeecCCceEEe
Confidence 99999999999544 44556678999999999998 999999999999999999987432 2223322 2233
Q ss_pred EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeee-----eeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 231 LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHEC-----LAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 231 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
.++++++ .+++++.|+.|++||++++...... .....+|...|++++|+|+ +++|++|+.||.|+|||
T Consensus 262 ~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~d------g~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 262 LCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSAD------GQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEECSSS-SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTT------SSEEEEEETTSCEEEEE
T ss_pred eecCCCC-ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCC------CCEEEEEeCCCEEEEEe
Confidence 4445554 5566678999999999987432211 1234478899999999999 88999999999999999
Q ss_pred eeeC
Q 038537 306 VKVM 309 (358)
Q Consensus 306 ~~~~ 309 (358)
+++.
T Consensus 335 ~~tG 338 (340)
T 4aow_A 335 VTIG 338 (340)
T ss_dssp EEC-
T ss_pred CCCc
Confidence 9853
No 49
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.7e-40 Score=280.44 Aligned_cols=266 Identities=18% Similarity=0.248 Sum_probs=215.9
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccc
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQ 86 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (358)
..+..|+..+..+...+.+|.+.|.++.+ ++++|++|+.||+|++||+.+++... .+.
T Consensus 46 ~~~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~--------------------~~~ 105 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH--------------------AIK 105 (380)
T ss_dssp GGCCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE--------------------EEE
T ss_pred ccccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce--------------------EEe
Confidence 34556888888888999999999999987 57799999999999999998765432 336
Q ss_pred cCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCC-----cccccccccccccCeEEEEEcCC-CCEEEEEeCCCcEEEE
Q 038537 87 QHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDK-----RCTCVDSFVAHESNVNAIVVNQD-DGFVFTCSSDGSVKIW 160 (358)
Q Consensus 87 ~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~w 160 (358)
.|...|.+++|+|++++|++|+.|+.+++||+.+. .......+.+|...|.++.|.|+ +..|++|+.|+.|++|
T Consensus 106 ~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~w 185 (380)
T 3iz6_a 106 LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185 (380)
T ss_dssp CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEE
T ss_pred cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEE
Confidence 78999999999999999999999999999998653 22244567789999999999996 4579999999999999
Q ss_pred EceecCCcceeeee-ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeE--EEeeeC
Q 038537 161 RRVYRENSHTLTMT-LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL--CLVAIE 237 (358)
Q Consensus 161 d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 237 (358)
|++++.....+... ..+|...|.++++.+ .++++|++|+.|+.|++||++... .....+.+|...|. +++|++
T Consensus 186 d~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~---~~~~~~~~h~~~v~~v~~~p~~ 261 (380)
T 3iz6_a 186 DVTTGQRISIFGSEFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITS---RAVRTYHGHEGDINSVKFFPDG 261 (380)
T ss_dssp CTTTCCEEEEECCCSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTC---CCCEEECCCSSCCCEEEECTTS
T ss_pred EcCCCcEEEEeecccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCC---cceEEECCcCCCeEEEEEecCC
Confidence 99766543332211 256888999999976 478899999999999999998532 23344667777664 556788
Q ss_pred CEEEEeeCCCeEEEEEcCCCceeeeeeeeecCc-------ccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 238 KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGH-------RGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h-------~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
++|++|+.||.|++||++++ +++..+..+ ...|++++|+|+ +.+|++|+.||.|++||+..
T Consensus 262 ~~l~s~s~D~~i~lwd~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~g~~dg~i~vwd~~~ 329 (380)
T 3iz6_a 262 QRFGTGSDDGTCRLFDMRTG----HQLQVYNREPDRNDNELPIVTSVAFSIS------GRLLFAGYSNGDCYVWDTLL 329 (380)
T ss_dssp SEEEEECSSSCEEEEETTTT----EEEEEECCCCSSSCCSSCSCSEEEECSS------SSEEEEECTTSCEEEEETTT
T ss_pred CeEEEEcCCCeEEEEECCCC----cEEEEecccccccccccCceEEEEECCC------CCEEEEEECCCCEEEEECCC
Confidence 99999999999999999998 444444433 235899999999 88999999999999999864
No 50
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-40 Score=282.46 Aligned_cols=283 Identities=10% Similarity=0.069 Sum_probs=210.1
Q ss_pred CEEeeeCCCcEEEEeCCCc--eeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 1 MVFTGSSSTRIRVWRQPDC--VERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~--~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
+|++|+.||.|++||+.++ +.+..+.+|...|.++.+ ++++|++++.||.|++||+.++.....
T Consensus 25 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~------------ 92 (377)
T 3dwl_C 25 EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQ------------ 92 (377)
T ss_dssp EEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCC------------
T ss_pred EEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceee------------
Confidence 4789999999999999988 788899999999999988 467999999999999999987651110
Q ss_pred eeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCc-ccccccccc-cccCeEEEEEcCCCCEEEEEeCC
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR-CTCVDSFVA-HESNVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d 154 (358)
...+.+|...|.+++|+|++++|++|+.|+.|++||+++++ ......+.. |...|.+++|+|++++|++++.|
T Consensus 93 -----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 93 -----TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp -----EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred -----eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 01336799999999999999999999999999999998775 112455666 99999999999999999999999
Q ss_pred CcEEEEEceecC--------------CcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccc
Q 038537 155 GSVKIWRRVYRE--------------NSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG 220 (358)
Q Consensus 155 g~i~~wd~~~~~--------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 220 (358)
+.|++||++... ........+ .|...|.+++|+| ++.+|++++.||.|++||+++........
T Consensus 168 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 244 (377)
T 3dwl_C 168 RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP--SGNALAYAGHDSSVTIAYPSAPEQPPRAL 244 (377)
T ss_dssp SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT--TSSCEEEEETTTEEC-CEECSTTSCEEEC
T ss_pred CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC--CCCEEEEEeCCCcEEEEECCCCCCcceee
Confidence 999999986432 112333444 7889999999998 99999999999999999999855433334
Q ss_pred ceeecccceeEE--EeeeCCEEEEeeCCCeEEEEEcCCCce-ee----------------------------------e-
Q 038537 221 GFLQGHCFAVLC--LVAIEKLIFSGSEDTTIRVWRRAEGGC-YH----------------------------------E- 262 (358)
Q Consensus 221 ~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~----------------------------------~- 262 (358)
..+.+|...+.+ +++++++|++|+.++.+ +|+...... .. .
T Consensus 245 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (377)
T 3dwl_C 245 ITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRST 323 (377)
T ss_dssp CCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------------
T ss_pred EeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccccccc
Confidence 556777776654 56688999998877655 666552210 00 0
Q ss_pred ------------eeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 263 ------------CLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 263 ------------~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
.......|.+.|+++++.+.... ....|+|||.||.|++||+
T Consensus 324 ~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~--~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 324 FRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPG--NITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------CCCSSSCSSCEEEEEEEEEETT--EEEEEEEEETTSEEEEECC
T ss_pred ccchhhccccccccccCccccceeEEEeccCCCCC--ceEEEEeecCCCcEEEecC
Confidence 00011239999999998775220 0127999999999999985
No 51
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=7.7e-40 Score=272.98 Aligned_cols=260 Identities=17% Similarity=0.204 Sum_probs=200.5
Q ss_pred eeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC-
Q 038537 23 GFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH- 99 (358)
Q Consensus 23 ~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~- 99 (358)
..+.+|.+.|.++.+ ++++|++|+.|++|++||+.++..... ..+.+|.+.|.+++|+|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~------------------~~l~gH~~~V~~v~~~~~ 68 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI------------------ADLRGHEGPVWQVAWAHP 68 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE------------------EEEECCSSCEEEEEECCG
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE------------------EEEcCCCccEEEEEeCCC
Confidence 345789999999987 578999999999999999986532110 13478999999999986
Q ss_pred -CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC--CCEEEEEeCCCcEEEEEceecCCcceeeeeec
Q 038537 100 -AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD--DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLK 176 (358)
Q Consensus 100 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 176 (358)
++++|++|+.|++|++||+++++......+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.... ........
T Consensus 69 ~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~-~~~~~~~~ 147 (316)
T 3bg1_A 69 MYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ-WEVKKINN 147 (316)
T ss_dssp GGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC-EEECCBTT
T ss_pred CCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC-cceeeeec
Confidence 488999999999999999988754456677889999999999997 78999999999999999875422 22234556
Q ss_pred ccCCceeEEEEeecC---------------CCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe--eeC--
Q 038537 177 FQQSSVNALALSSFF---------------DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV--AIE-- 237 (358)
Q Consensus 177 ~~~~~i~~~~~~~~~---------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-- 237 (358)
.|...+.+++|+|.. .+.+|++|+.|+.|++||++... .......+.+|...+.++. |++
T Consensus 148 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~~sp~~~~ 226 (316)
T 3bg1_A 148 AHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVAWAPSIGL 226 (316)
T ss_dssp SSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEECCCCSSC
T ss_pred cccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEEecCCCCC
Confidence 788899999999821 14689999999999999986421 1123344678888886665 444
Q ss_pred --CEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 238 --KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 238 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.+|++|+.||.|++|++.+..........+..|...|.+++|+|+ +.+|++++.||.|++|+...
T Consensus 227 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~------g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 227 PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSIT------ANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTT------TCCEEEEESSSCEEEEEECT
T ss_pred CCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCC------CCEEEEEcCCCeEEEEEECC
Confidence 789999999999999998632100122345578899999999999 88999999999999999863
No 52
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.7e-38 Score=267.38 Aligned_cols=263 Identities=16% Similarity=0.254 Sum_probs=217.0
Q ss_pred CEEeeeCCCcEEEEeCCCceee---eeee--ecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCC
Q 038537 1 MVFTGSSSTRIRVWRQPDCVER---GFIK--ARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~---~~~~--~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
+|++++ ||.|++||+.+++.. ..+. .|...|.++.+ ++++|++++.||.|++||+.+++....
T Consensus 65 ~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~--------- 134 (337)
T 1gxr_A 65 HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK--------- 134 (337)
T ss_dssp EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE---------
T ss_pred EEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee---------
Confidence 367777 999999999876533 3333 78899999987 477999999999999999987652211
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS 153 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 153 (358)
..+..|...|.+++|+|++++|++++.||.|++||+++++ .+..+..|...|.+++|+|+++.+++++.
T Consensus 135 ---------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 203 (337)
T 1gxr_A 135 ---------AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT--LVRQFQGHTDGASCIDISNDGTKLWTGGL 203 (337)
T ss_dssp ---------EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ---------eecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc--eeeeeecccCceEEEEECCCCCEEEEEec
Confidence 1236788999999999999999999999999999999887 67778889999999999999999999999
Q ss_pred CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEE-
Q 038537 154 DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC- 232 (358)
Q Consensus 154 dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~- 232 (358)
||.|++||+++++.... . .+...+.+++|+| ++.++++++.++.|++||++.... .....|...+.+
T Consensus 204 dg~i~~~d~~~~~~~~~----~-~~~~~v~~~~~s~--~~~~l~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~v~~~ 271 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQ----H-DFTSQIFSLGYCP--TGEWLAVGMESSNVEVLHVNKPDK-----YQLHLHESCVLSL 271 (337)
T ss_dssp TSEEEEEETTTTEEEEE----E-ECSSCEEEEEECT--TSSEEEEEETTSCEEEEETTSSCE-----EEECCCSSCEEEE
T ss_pred CCcEEEEECCCCceEee----e-cCCCceEEEEECC--CCCEEEEEcCCCcEEEEECCCCCe-----EEEcCCccceeEE
Confidence 99999999965543222 2 3578899999998 999999999999999999987431 234566666654
Q ss_pred -EeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 233 -LVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 233 -~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
+++++++|++++.||.|++||+.+++. +. ...|...|++++|+|+ +.+|++++.||.|++|++.
T Consensus 272 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~----~~-~~~~~~~v~~~~~s~~------~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 272 KFAYCGKWFVSTGKDNLLNAWRTPYGAS----IF-QSKESSSVLSCDISVD------DKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCE----EE-EEECSSCEEEEEECTT------SCEEEEEETTSCEEEEEEE
T ss_pred EECCCCCEEEEecCCCcEEEEECCCCeE----EE-EecCCCcEEEEEECCC------CCEEEEecCCCeEEEEEEe
Confidence 456789999999999999999999843 32 2358889999999999 8899999999999999985
No 53
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.1e-39 Score=278.14 Aligned_cols=270 Identities=14% Similarity=0.221 Sum_probs=217.8
Q ss_pred eCCCcEEEEeCCCce---eeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 6 SSSTRIRVWRQPDCV---ERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 6 ~~dg~v~vw~~~~~~---~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
+.||.|++||+.++. .+.. ..|...|.++.+ ++.+|++|+.||.|++|++........
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~---------------- 104 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAIN---------------- 104 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCC----------------
T ss_pred CCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCCeEEEEccCCeEEEeeccccccccc----------------
Confidence 899999999998875 3333 358899999987 577999999999999999986221100
Q ss_pred CCCccccCCCceEEEEEeCC-CCEEEEEecCCeEEEEEccCCc------cc-ccccccccccCeEEEEEcCC-CCEEEEE
Q 038537 81 KSNTQQQHRDCVSCMAFYHA-EGLLYTGSFDKTVKAWRVLDKR------CT-CVDSFVAHESNVNAIVVNQD-DGFVFTC 151 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~------~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~ 151 (358)
....+.+|...|++++|+|+ +.+|++++.|+.|++||+.+.+ .. ....+..|...|.+++|+|+ +.+++++
T Consensus 105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 184 (416)
T 2pm9_A 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA 184 (416)
T ss_dssp EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE
Confidence 00134689999999999998 8999999999999999998765 11 12334678999999999998 7899999
Q ss_pred eCCCcEEEEEceecCCcceeeeeeccc------CCceeEEEEeecCCC-cEEEEeecCC---cEEEEEccCCcCCccccc
Q 038537 152 SSDGSVKIWRRVYRENSHTLTMTLKFQ------QSSVNALALSSFFDN-YFLYSGSSDG---SINFWEKDKMSGGFNHGG 221 (358)
Q Consensus 152 ~~dg~i~~wd~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~~~~~~~~~~ 221 (358)
+.||.|++||+++++. ...+..+ ...+.+++|+| ++ .++++++.|+ .|++||++.... ...
T Consensus 185 ~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~~~~i~~~d~~~~~~---~~~ 255 (416)
T 2pm9_A 185 GSSNFASIWDLKAKKE----VIHLSYTSPNSGIKQQLSVVEWHP--KNSTRVATATGSDNDPSILIWDLRNANT---PLQ 255 (416)
T ss_dssp SSSSCEEEEETTTTEE----EEEECCCCCSSCCCCCEEEEEECS--SCTTEEEEEECCSSSCCCCEEETTSTTS---CSB
T ss_pred cCCCCEEEEECCCCCc----ceEEeccccccccCCceEEEEECC--CCCCEEEEEECCCCCceEEEEeCCCCCC---CcE
Confidence 9999999999965443 3333333 78899999998 65 6999999998 999999997432 222
Q ss_pred eee-cccceeEEE--ee-eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeC-eEEEEcc
Q 038537 222 FLQ-GHCFAVLCL--VA-IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMG-FLVYSSS 296 (358)
Q Consensus 222 ~~~-~~~~~~~~~--~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~-~~l~s~~ 296 (358)
.+. +|...+.++ +| ++++|++++.||.|++||+.++ +++..+.+|...|++++|+|+ + .+|++++
T Consensus 256 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~----~~~~~~~~~~~~v~~~~~s~~------~~~~l~s~~ 325 (416)
T 2pm9_A 256 TLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA----EQLSQFPARGNWCFKTKFAPE------APDLFACAS 325 (416)
T ss_dssp CCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC----CEEEEEECSSSCCCCEEECTT------CTTEEEECC
T ss_pred EeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC----ccceeecCCCCceEEEEECCC------CCCEEEEEe
Confidence 344 677777655 45 7899999999999999999998 667888899999999999999 6 7999999
Q ss_pred CCCcEEEEEeeeCCC
Q 038537 297 LDQTFKVWRVKVMPD 311 (358)
Q Consensus 297 ~dg~v~iw~~~~~~~ 311 (358)
.||.|++||+.....
T Consensus 326 ~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 326 FDNKIEVQTLQNLTN 340 (416)
T ss_dssp SSSEEEEEESCCCCC
T ss_pred cCCcEEEEEccCCCC
Confidence 999999999987553
No 54
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-38 Score=261.43 Aligned_cols=261 Identities=22% Similarity=0.317 Sum_probs=219.1
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++|+.||.|++||+.+++....+..|...|.++.+ ++++|++++.||.|++|++........
T Consensus 31 ~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-------------- 96 (313)
T 3odt_A 31 KVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDP-------------- 96 (313)
T ss_dssp EEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC--------------
T ss_pred EEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCc--------------
Confidence 4799999999999999999999999999999999877 578999999999999999976532211
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSV 157 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 157 (358)
...+.+|...|.+++| +++.|++++.||.|++|| ..+ ....+..|...+.+++|.| +++.+++++.||.|
T Consensus 97 ---~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i 167 (313)
T 3odt_A 97 ---LYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGS--LVYNLQAHNASVWDAKVVSFSENKFLTASADKTI 167 (313)
T ss_dssp ----CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTE--EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCE
T ss_pred ---ccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCc--EEEecccCCCceeEEEEccCCCCEEEEEECCCCE
Confidence 1234689999999999 577999999999999999 344 5677788999999999998 89999999999999
Q ss_pred EEEEceecCCcceeeeeecc-cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee-
Q 038537 158 KIWRRVYRENSHTLTMTLKF-QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA- 235 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 235 (358)
++||.. .....+.. +...+.+++++| ++. +++++.||.|++||+++. .....+.+|...+.++.+
T Consensus 168 ~i~d~~------~~~~~~~~~~~~~i~~~~~~~--~~~-~~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 168 KLWQND------KVIKTFSGIHNDVVRHLAVVD--DGH-FISCSNDGLIKLVDMHTG----DVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp EEEETT------EEEEEECSSCSSCEEEEEEEE--TTE-EEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEEC
T ss_pred EEEecC------ceEEEEeccCcccEEEEEEcC--CCe-EEEccCCCeEEEEECCch----hhhhhhhcCCceEEEEEEe
Confidence 999942 22233344 788999999998 766 999999999999999873 344456677777766654
Q ss_pred -eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 236 -IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 236 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
++ .|++++.||.|++||+.++ +++..+..|...|++++|+|+ +. +++++.||.|++||++..
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~i~~~~~~~~------~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENG----SLKQVITLPAISIWSVDCMSN------GD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTC----CEEEEEECSSSCEEEEEECTT------SC-EEEEETTSCEEEEESCGG
T ss_pred cCC-CEEEEecCCEEEEEECCCC----ceeEEEeccCceEEEEEEccC------CC-EEEEeCCCcEEEEeCCCC
Confidence 55 6999999999999999998 567788899999999999999 76 667899999999999864
No 55
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.3e-39 Score=279.48 Aligned_cols=272 Identities=17% Similarity=0.234 Sum_probs=217.5
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++|+.||.|++||+.+++....+.+|...|.++.+ ++++|++|+.||.|++||+.+++...
T Consensus 111 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--------------- 175 (420)
T 3vl1_A 111 RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR--------------- 175 (420)
T ss_dssp EEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCE---------------
T ss_pred EEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCce---------------
Confidence 4789999999999999999998888999999999988 56799999999999999998776442
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccc---cccCeEE-----------------
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA---HESNVNA----------------- 138 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~----------------- 138 (358)
.+.+|...|.+++|+|++++|++++.|+.|++||+++++ .+..+.. +...|.+
T Consensus 176 -----~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 248 (420)
T 3vl1_A 176 -----TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT--TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS 248 (420)
T ss_dssp -----EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE--EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC
T ss_pred -----EEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc--eeEEeecCCCCCCCccEEEEecCCcceeeecccC
Confidence 336899999999999999999999999999999999887 4555443 3344444
Q ss_pred ----EEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCc-EEEEeecCCcEEEEEccCC
Q 038537 139 ----IVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNY-FLYSGSSDGSINFWEKDKM 213 (358)
Q Consensus 139 ----~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 213 (358)
++|+|++++|++++.||.|++||++++.. .......|...|.+++|+| ++. +|++|+.||.|++||+++.
T Consensus 249 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~--~~~~~l~~g~~dg~i~vwd~~~~ 323 (420)
T 3vl1_A 249 KKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ---TIQLPSKFTCSCNSLTVDG--NNANYIYAGYENGMLAQWDLRSP 323 (420)
T ss_dssp CCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE---EEEECCTTSSCEEEEEECS--SCTTEEEEEETTSEEEEEETTCT
T ss_pred cccceEEcCCCCEEEEEcCCCeEEEEECCCCce---eEEcccccCCCceeEEEeC--CCCCEEEEEeCCCeEEEEEcCCC
Confidence 44578899999999999999999975542 2223345788999999998 777 9999999999999999874
Q ss_pred cCCccccceeec-ccceeEEE-eeeCCEEEEeeCCCeEEEEEcCCCceee-----eeeeeecCcccceEEEEeeccccee
Q 038537 214 SGGFNHGGFLQG-HCFAVLCL-VAIEKLIFSGSEDTTIRVWRRAEGGCYH-----ECLAVLDGHRGPVRCLAASLEMEKV 286 (358)
Q Consensus 214 ~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~~h~~~v~~i~~~~~~~~~ 286 (358)
... ...+.. |...+.++ .+++++|++++.||.|++|++....... .....+.+|.+.|.+++|+|+
T Consensus 324 ~~~---~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---- 396 (420)
T 3vl1_A 324 ECP---VGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSD---- 396 (420)
T ss_dssp TSC---SEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECC----
T ss_pred cCc---hhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccC----
Confidence 331 222333 45555444 3467899999999999999998743211 112345678899999999999
Q ss_pred eeCe---EEEEccCCCcEEEEEeee
Q 038537 287 VMGF---LVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 287 ~~~~---~l~s~~~dg~v~iw~~~~ 308 (358)
+. .|++++.+|.+.+|++++
T Consensus 397 --~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 397 --DESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp --SSSSCEEEEEETTTEEEEEESCC
T ss_pred --CCCcceEEEEcCCceEEEEeccC
Confidence 66 677777889999999874
No 56
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-39 Score=285.50 Aligned_cols=283 Identities=13% Similarity=0.066 Sum_probs=206.6
Q ss_pred EEeeeCCCcEEEEeCCCceee----eeeeecccceEEEEecC--------CEEEEEeCCceEEEEecccccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVER----GFIKARHGEVRAILAHD--------NMLFTTNKDCKIRIWNFTVSDNFRTKKVTT 69 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~----~~~~~h~~~v~~i~~~~--------~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 69 (358)
+++++.||+|+|||+.+++.. ..+.+|.+.|.+++|.+ ++||+++.||+|++||+..+........ .
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~-~ 254 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK-M 254 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE-C
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce-e
Confidence 678899999999999776542 34667889999998853 5999999999999999986643210000 0
Q ss_pred cCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEE--EEcCCC-C
Q 038537 70 LPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI--VVNQDD-G 146 (358)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~ 146 (358)
...+...+.+|...|++++|+++ ..|++|+.||+|++||++++.. +...+..|...|.++ .|+|++ .
T Consensus 255 --------~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~-~~~~~~~H~~~V~sv~~~~s~~g~~ 324 (524)
T 2j04_B 255 --------CEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEV-PSFYDQVHDSYILSVSTAYSDFEDT 324 (524)
T ss_dssp --------CCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSS-CSEEEECSSSCEEEEEEECCTTSCC
T ss_pred --------ecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCC-ceEEeecccccEEEEEEEcCCCCCe
Confidence 00111245789999999999986 4899999999999999987641 345578899999999 567887 8
Q ss_pred EEEEEeCCCcEEEEEceecCCcceeeeeecccC--CceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceee
Q 038537 147 FVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ--SSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ 224 (358)
Q Consensus 147 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 224 (358)
+|++++.|++|++||+++.+....+ ..|. ..|.+++|+| ++..+++++.|+.|++||++... ....+.
T Consensus 325 ~laS~S~D~tvklWD~~~~~~~~~~----~~~~~~~~v~~v~fsp--~~~~l~s~~~d~tv~lwd~~~~~----~~~~l~ 394 (524)
T 2j04_B 325 VVSTVAVDGYFYIFNPKDIATTKTT----VSRFRGSNLVPVVYCP--QIYSYIYSDGASSLRAVPSRAAF----AVHPLV 394 (524)
T ss_dssp EEEEEETTSEEEEECGGGHHHHCEE----EEECSCCSCCCEEEET--TTTEEEEECSSSEEEEEETTCTT----CCEEEE
T ss_pred EEEEeccCCeEEEEECCCCCccccc----ccccccCcccceEeCC--CcCeEEEeCCCCcEEEEECcccc----cceeee
Confidence 9999999999999999765433222 2333 3578999998 88999999999999999998733 233466
Q ss_pred cccceeEEE--eeeCCEEEEeeCCCeEEEEEcCCCce--------------e--------------------------ee
Q 038537 225 GHCFAVLCL--VAIEKLIFSGSEDTTIRVWRRAEGGC--------------Y--------------------------HE 262 (358)
Q Consensus 225 ~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~--------------------------~~ 262 (358)
+|...|.++ +|++++|++|+.||+|++||+..... . ..
T Consensus 395 gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~ 474 (524)
T 2j04_B 395 SRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDV 474 (524)
T ss_dssp ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC------
T ss_pred cCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCc
Confidence 788777554 56789999999999999998642100 0 11
Q ss_pred eeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 263 CLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 263 ~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.+..+.+|...|.+++|+|+.+. +..|++|+.||.|+||+++-
T Consensus 475 ~~~~l~gh~~~V~~Vafsp~~~~---~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 475 SKAKIDAHGINITCTKWNETSAG---GKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp -------CCCSCCCEEECCSTTT---TTEEEEECTTSEEEEEECSC
T ss_pred ceeeecCCCceEEEEECCCCCCc---cHHHHhhccCceEEEEEccc
Confidence 23456678899999999999321 34999999999999999874
No 57
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.3e-38 Score=267.90 Aligned_cols=276 Identities=16% Similarity=0.157 Sum_probs=215.7
Q ss_pred EEeeeC---CCcEEEEeCCCceeeeee-eecccceEEEEec-----CCEEEEEeCCceEEEEeccccc-ccccccccccC
Q 038537 2 VFTGSS---STRIRVWRQPDCVERGFI-KARHGEVRAILAH-----DNMLFTTNKDCKIRIWNFTVSD-NFRTKKVTTLP 71 (358)
Q Consensus 2 l~tg~~---dg~v~vw~~~~~~~~~~~-~~h~~~v~~i~~~-----~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~ 71 (358)
+++|+. ||.|++||+.+++..... .+|...|.++.+. +++|++|+.||.|++||+.+++ ...
T Consensus 34 ~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------- 105 (357)
T 3i2n_A 34 VTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY-------- 105 (357)
T ss_dssp EEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE--------
T ss_pred EEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE--------
Confidence 567776 999999999988765443 4799999999884 4889999999999999998765 221
Q ss_pred CCceeeeecCCCccccCCCceEEEE------EeCCCCEEEEEecCCeEEEEEccCCcccccccccccc----cCeEEEE-
Q 038537 72 RRSSFLSFSKSNTQQQHRDCVSCMA------FYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHE----SNVNAIV- 140 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~~h~~~v~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~- 140 (358)
.+.+|...|.+++ |+|++++|++++.||.|++||+.+++. .+..+..|. ..+.+++
T Consensus 106 ------------~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~-~~~~~~~~~~~~~~~v~~~~~ 172 (357)
T 3i2n_A 106 ------------SVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD-PVANMEPVQGENKRDCWTVAF 172 (357)
T ss_dssp ------------EECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS-CSEEECCCTTSCCCCEEEEEE
T ss_pred ------------EEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC-cceeccccCCCCCCceEEEEE
Confidence 3468999999995 467899999999999999999987651 344444433 3899998
Q ss_pred ---EcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecC-CCcEEEEeecCCcEEEEEccCCcCC
Q 038537 141 ---VNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFF-DNYFLYSGSSDGSINFWEKDKMSGG 216 (358)
Q Consensus 141 ---~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~ 216 (358)
|+|+++++++++.||.|++||+++++. .....+...|.+++|+|.. ++.++++++.||.|++||++.....
T Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 173 GNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp ECCCC-CCCEEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred EeccCCCCCEEEEEccCCeEEEEECccCce-----eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 678999999999999999999965542 2234578899999999732 6789999999999999999874432
Q ss_pred cccc-ceeecccceeEEEe--eeCC-EEEEeeCCCeEEEEEcCCCcee---------------eeeeeeecCcccceEEE
Q 038537 217 FNHG-GFLQGHCFAVLCLV--AIEK-LIFSGSEDTTIRVWRRAEGGCY---------------HECLAVLDGHRGPVRCL 277 (358)
Q Consensus 217 ~~~~-~~~~~~~~~~~~~~--~~~~-~l~~~~~dg~i~iwd~~~~~~~---------------~~~~~~~~~h~~~v~~i 277 (358)
.... ....+|...+.++. |+++ +|++++.||.|++||+..+... .+.+..+.+|..+|+++
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL 327 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE
T ss_pred cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEE
Confidence 2211 12236777776654 5566 8999999999999999865432 14677888999999999
Q ss_pred EeecccceeeeCeEEE-EccCCCcEEEEEeeeC
Q 038537 278 AASLEMEKVVMGFLVY-SSSLDQTFKVWRVKVM 309 (358)
Q Consensus 278 ~~~~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~ 309 (358)
+|+|+ +.+|+ +++.||.|++||+...
T Consensus 328 ~~s~~------~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 328 DWSPD------KRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EECSS------STTEEEEEETTSEEEEEEECC-
T ss_pred EEcCC------CCeEEEEecCCCcEEEEECCCc
Confidence 99999 77777 8999999999999853
No 58
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=8.4e-38 Score=270.12 Aligned_cols=275 Identities=16% Similarity=0.241 Sum_probs=220.0
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeee-------------ecccceEEEEec---CCEEEEEeCCceEEEEeccccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIK-------------ARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRT 64 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~-------------~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~ 64 (358)
+|++|+.||.|++||+.+++....+. +|...|.++.+. +.+|++++.||.|++||+.+++....
T Consensus 58 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 137 (408)
T 4a11_B 58 YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADV 137 (408)
T ss_dssp EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcccee
Confidence 48999999999999999877665554 599999999884 46899999999999999987765432
Q ss_pred ccccccCCCceeeeecCCCccccCCCceEEEEEeCC---CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEE
Q 038537 65 KKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA---EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVV 141 (358)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 141 (358)
..+...+.++.++|. +.++++++.|+.|++||+.+++ .+..+..|...|.+++|
T Consensus 138 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~v~~~~~ 194 (408)
T 4a11_B 138 ---------------------FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS--CSHILQGHRQEILAVSW 194 (408)
T ss_dssp ---------------------EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC--CCEEECCCCSCEEEEEE
T ss_pred ---------------------ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc--eeeeecCCCCcEEEEEE
Confidence 236677899999884 4499999999999999999887 67788889999999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEEceecCCcce------------eeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEE
Q 038537 142 NQDDG-FVFTCSSDGSVKIWRRVYRENSHT------------LTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFW 208 (358)
Q Consensus 142 ~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~------------~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~ 208 (358)
+|++. ++++++.||.|++||++....... .......|...|.+++|+| ++.+|++++.||.|++|
T Consensus 195 ~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~vw 272 (408)
T 4a11_B 195 SPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS--DGLHLLTVGTDNRMRLW 272 (408)
T ss_dssp CSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT--TSSEEEEEETTSCEEEE
T ss_pred CCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC--CCCEEEEecCCCeEEEE
Confidence 99988 589999999999999976542211 1122256888999999998 99999999999999999
Q ss_pred EccCCcCCccccceeec---ccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccce
Q 038537 209 EKDKMSGGFNHGGFLQG---HCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEK 285 (358)
Q Consensus 209 d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~ 285 (358)
|+++............. ...........+..+++++.++.|++||+.++ +++..+.+|...|++++|+|+
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~----~~~~~~~~~~~~v~~~~~s~~--- 345 (408)
T 4a11_B 273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG----EQITMLKGHYKTVDCCVFQSN--- 345 (408)
T ss_dssp ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC----CEEEEECCCSSCEEEEEEETT---
T ss_pred ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC----cceeeeccCCCeEEEEEEcCC---
Confidence 99985543322111111 11112222234567777788999999999998 678888999999999999999
Q ss_pred eeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 286 VVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 286 ~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
+.+|++++.||.|++||++..+
T Consensus 346 ---~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 346 ---FQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp ---TTEEEEEETTSCEEEEEECC--
T ss_pred ---CCEEEEECCCCeEEEEeCCCCC
Confidence 8899999999999999998653
No 59
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-39 Score=278.50 Aligned_cols=280 Identities=14% Similarity=0.149 Sum_probs=222.2
Q ss_pred CEEeeeCCCcEEEEeCCC----ceeeeeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccc-cccccCC
Q 038537 1 MVFTGSSSTRIRVWRQPD----CVERGFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTK-KVTTLPR 72 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~----~~~~~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~-~~~~~~~ 72 (358)
+|++|+.||.|++||+.+ .+.+..+.+|...|.++.++ +++|++++.||.|++||+.+.+..... ...
T Consensus 81 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---- 156 (416)
T 2pm9_A 81 IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPL---- 156 (416)
T ss_dssp CEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCB----
T ss_pred eEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccc----
Confidence 589999999999999987 45788889999999999884 679999999999999999876521100 000
Q ss_pred CceeeeecCCCccccCCCceEEEEEeCC-CCEEEEEecCCeEEEEEccCCccccccccccc------ccCeEEEEEcCCC
Q 038537 73 RSSFLSFSKSNTQQQHRDCVSCMAFYHA-EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAH------ESNVNAIVVNQDD 145 (358)
Q Consensus 73 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~v~~~~~~~~~ 145 (358)
......+|...|.+++|+|+ +.+|++++.||.|++||+++++ .+..+..+ ...|.+++|+|++
T Consensus 157 --------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~ 226 (416)
T 2pm9_A 157 --------TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPKN 226 (416)
T ss_dssp --------CCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE--EEEEECCCCCSSCCCCCEEEEEECSSC
T ss_pred --------ccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC--cceEEeccccccccCCceEEEEECCCC
Confidence 00123578999999999998 7899999999999999999887 55555554 7899999999987
Q ss_pred -CEEEEEeCCC---cEEEEEceecCCcceeeeeec-ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccc
Q 038537 146 -GFVFTCSSDG---SVKIWRRVYRENSHTLTMTLK-FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG 220 (358)
Q Consensus 146 -~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 220 (358)
.++++++.|+ .|++||+++.. .....+. .|...|.+++|+| .++.+|++++.||.|++||+++. ...
T Consensus 227 ~~~l~~~~~d~~~~~i~~~d~~~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~~l~s~~~dg~v~~wd~~~~----~~~ 298 (416)
T 2pm9_A 227 STRVATATGSDNDPSILIWDLRNAN---TPLQTLNQGHQKGILSLDWCH-QDEHLLLSSGRDNTVLLWNPESA----EQL 298 (416)
T ss_dssp TTEEEEEECCSSSCCCCEEETTSTT---SCSBCCCSCCSSCEEEEEECS-SCSSCEEEEESSSEEEEECSSSC----CEE
T ss_pred CCEEEEEECCCCCceEEEEeCCCCC---CCcEEeecCccCceeEEEeCC-CCCCeEEEEeCCCCEEEeeCCCC----ccc
Confidence 6899999998 99999997643 2233445 6889999999997 36889999999999999999873 333
Q ss_pred ceeeccccee--EEEeeeC-CEEEEeeCCCeEEEEEcCCCceeeeee-------------------------------ee
Q 038537 221 GFLQGHCFAV--LCLVAIE-KLIFSGSEDTTIRVWRRAEGGCYHECL-------------------------------AV 266 (358)
Q Consensus 221 ~~~~~~~~~~--~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-------------------------------~~ 266 (358)
..+.+|...+ .+++|++ .+|++++.||.|++||+.+........ ..
T Consensus 299 ~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (416)
T 2pm9_A 299 SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQA 378 (416)
T ss_dssp EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCC
T ss_pred eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccC
Confidence 4456666655 5556676 899999999999999998764211110 01
Q ss_pred ecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 267 LDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 267 ~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
...|..++++++|+|+ |++|++++.||.|+||++.+
T Consensus 379 ~~~~~~~~~~~~~s~d------g~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 379 PTWYGEPSPAAHWAFG------GKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CSTTCCCSCCCEEETT------TEEECBCTTSSCBCCBCCCC
T ss_pred CccccCCccceEEeeC------CeEEEEeCCCCeEEEEEecc
Confidence 1126778889999999 89999999999999999875
No 60
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-37 Score=269.26 Aligned_cols=265 Identities=17% Similarity=0.256 Sum_probs=215.0
Q ss_pred CEEeeeCCCcEEEEeC----CCce------eeeeeee----------cccceEEEEe--cCCEEEEEeCCceEEEEeccc
Q 038537 1 MVFTGSSSTRIRVWRQ----PDCV------ERGFIKA----------RHGEVRAILA--HDNMLFTTNKDCKIRIWNFTV 58 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~----~~~~------~~~~~~~----------h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~ 58 (358)
+|++|+.||.|++|++ .+++ ....+.. |.+.|.++.+ ++++|++++.||.|++||..
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~- 138 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKT- 138 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETT-
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCC-
Confidence 4899999999999999 8877 4555544 6789999987 57799999999999999933
Q ss_pred ccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccC---
Q 038537 59 SDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESN--- 135 (358)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--- 135 (358)
+.... .+.+|...|.+++|+|++++|++++.|+.|++||+.+++ .+..+..+...
T Consensus 139 ~~~~~--------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 139 GALLN--------------------VLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGT--VMQHFELKETGGSS 196 (425)
T ss_dssp SCEEE--------------------EECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTE--EEEEECCC------
T ss_pred CCeee--------------------eccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCc--EEEEeeccccCccc
Confidence 32221 336799999999999999999999999999999998887 56666666655
Q ss_pred ------------eEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC
Q 038537 136 ------------VNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG 203 (358)
Q Consensus 136 ------------v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg 203 (358)
+.+++|+|++ .+++++.+|.|++||++++.. ...+..|...|.+++|+| ++.+|++++.||
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~----~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~ 269 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTP----TGKLIGHHGPISVLEFND--TNKLLLSASDDG 269 (425)
T ss_dssp ---------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSC----SEEECCCSSCEEEEEEET--TTTEEEEEETTS
T ss_pred eeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCce----eeeeccCCCceEEEEECC--CCCEEEEEcCCC
Confidence 8999999874 588999999999999976543 334556889999999998 899999999999
Q ss_pred cEEEEEccCCcCCccccceeecccceeEEEe--eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeec
Q 038537 204 SINFWEKDKMSGGFNHGGFLQGHCFAVLCLV--AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASL 281 (358)
Q Consensus 204 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 281 (358)
.|++||++... ....+.+|...+.++. +++ ++++++.||.|++||+.++ +.+..+..|...|++++|+|
T Consensus 270 ~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 270 TLRIWHGGNGN----SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN----TLLALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp CEEEECSSSBS----CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT----EEEEEEECTTCCEEEEEECT
T ss_pred EEEEEECCCCc----cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC----cEeEecccCCccEEEEEEcC
Confidence 99999998743 3334556766776655 455 9999999999999999988 56778889999999999999
Q ss_pred ccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 282 EMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 282 ~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
+ +.+|++++.||.|++||++...
T Consensus 341 ~------~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 341 D------GQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp T------SSEEEEEETTSCEEEEECHHHH
T ss_pred C------CCEEEEEECCCeEEEEECCCCc
Confidence 9 8899999999999999998643
No 61
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-37 Score=265.83 Aligned_cols=265 Identities=17% Similarity=0.215 Sum_probs=214.4
Q ss_pred ceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEE
Q 038537 19 CVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMA 96 (358)
Q Consensus 19 ~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 96 (358)
|+.+..+.+|.+.|.++++ ++++|++|+.||.|++||+........ ..+.+|...|++++
T Consensus 1 G~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~------------------~~~~~h~~~v~~~~ 62 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI------------------DTLTGHEGPVWRVD 62 (379)
T ss_dssp ----CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE------------------EEECCCSSCEEEEE
T ss_pred CCccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee------------------eEecCCCCcEEEEE
Confidence 3566788999999999987 478999999999999999974321110 13468999999999
Q ss_pred EeCC--CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC--CCEEEEEeCCCcEEEEEceecCCcceee
Q 038537 97 FYHA--EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD--DGFVFTCSSDGSVKIWRRVYRENSHTLT 172 (358)
Q Consensus 97 ~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 172 (358)
|+++ +++|++|+.||.|++||+.+++...+..+..|...|.+++|+|+ +.++++++.||.|++||++...... .
T Consensus 63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~--~ 140 (379)
T 3jrp_A 63 WAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS--P 140 (379)
T ss_dssp ECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC--E
T ss_pred eCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee--e
Confidence 9977 89999999999999999998875567777889999999999999 9999999999999999997664332 2
Q ss_pred eeecccCCceeEEEEeecC-----------CCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eee---
Q 038537 173 MTLKFQQSSVNALALSSFF-----------DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAI--- 236 (358)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~-----------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~--- 236 (358)
..+..|...|.+++|+|.. ++.+|++++.||.|++||++...........+.+|...+.++ +|+
T Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220 (379)
T ss_dssp EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCC
Confidence 3456788999999999821 589999999999999999987554444555566777777555 566
Q ss_pred CCEEEEeeCCCeEEEEEcCCCcee-eeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCY-HECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
+++|++++.||.|++||+.++... ...+.....|...|++++|+|+ +.+|++++.||.|++|++...
T Consensus 221 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 221 RSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS------GNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSS------SCCEEEEESSSSEEEEEEEET
T ss_pred CCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCC------CCEEEEecCCCcEEEEeCCCC
Confidence 789999999999999999986421 1233334458899999999999 889999999999999999854
No 62
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.6e-37 Score=260.19 Aligned_cols=269 Identities=14% Similarity=0.200 Sum_probs=215.3
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
++++..++.+.+|............+|...|.++.+ ++++|++++ ||.|++||+.+..........
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~----------- 91 (337)
T 1gxr_A 24 QPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL----------- 91 (337)
T ss_dssp EECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE-----------
T ss_pred EEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecc-----------
Confidence 344555555555555555555555689999999987 567899888 999999999876543222111
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
...+|...|.+++|+|++++|++++.|+.|++||+.+++......+..|...|.+++|+|+++++++++.||.|++
T Consensus 92 ----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~ 167 (337)
T 1gxr_A 92 ----DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167 (337)
T ss_dssp ----ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ----cccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 1136889999999999999999999999999999998775456677789999999999999999999999999999
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccce--eEEEeeeC
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFA--VLCLVAIE 237 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 237 (358)
||++++ .....+..|...+.+++|+| ++.+|++++.||.|++||+++...... . .+... ..++++++
T Consensus 168 ~d~~~~----~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~----~-~~~~~v~~~~~s~~~ 236 (337)
T 1gxr_A 168 WDLHNQ----TLVRQFQGHTDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQ----H-DFTSQIFSLGYCPTG 236 (337)
T ss_dssp EETTTT----EEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEE----E-ECSSCEEEEEECTTS
T ss_pred EeCCCC----ceeeeeecccCceEEEEECC--CCCEEEEEecCCcEEEEECCCCceEee----e-cCCCceEEEEECCCC
Confidence 999644 34455667899999999998 899999999999999999987432211 1 23333 35566789
Q ss_pred CEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 238 KLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
++|++++.||.|++||+.+++ ...+..|...|++++|+|+ +++|++++.||.|++||++.
T Consensus 237 ~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 237 EWLAVGMESSNVEVLHVNKPD-----KYQLHLHESCVLSLKFAYC------GKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp SEEEEEETTSCEEEEETTSSC-----EEEECCCSSCEEEEEECTT------SSEEEEEETTSEEEEEETTT
T ss_pred CEEEEEcCCCcEEEEECCCCC-----eEEEcCCccceeEEEECCC------CCEEEEecCCCcEEEEECCC
Confidence 999999999999999999873 3456789999999999999 88999999999999999875
No 63
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.3e-37 Score=254.87 Aligned_cols=236 Identities=18% Similarity=0.178 Sum_probs=190.8
Q ss_pred CEEeeeCCCcEEEEeCCC--ceeeeeeeecccceEEEEec----CCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 1 MVFTGSSSTRIRVWRQPD--CVERGFIKARHGEVRAILAH----DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~--~~~~~~~~~h~~~v~~i~~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
+||+|+.||+|+|||+.+ .+.+..+.+|.++|.++.+. +++|++|+.||+|++||+.+++....
T Consensus 23 ~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~---------- 92 (297)
T 2pm7_B 23 RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI---------- 92 (297)
T ss_dssp EEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC----------
T ss_pred EEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE----------
Confidence 489999999999999874 46778999999999999873 67999999999999999986532110
Q ss_pred eeeeecCCCccccCCCceEEEEEeCC--CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC--------
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHA--EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD-------- 144 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-------- 144 (358)
..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+++........+.+|...|.+++|+|+
T Consensus 93 --------~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 164 (297)
T 2pm7_B 93 --------AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (297)
T ss_dssp --------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-------
T ss_pred --------EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccC
Confidence 123679999999999997 88999999999999999987642234556789999999999996
Q ss_pred -----CCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCC---CcEEEEeecCCcEEEEEccCCcCC
Q 038537 145 -----DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFD---NYFLYSGSSDGSINFWEKDKMSGG 216 (358)
Q Consensus 145 -----~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~ 216 (358)
+++|++|+.|+.|++||++.+.........+.+|...|.+++|+| + +.+|++++.|+.|++||++.....
T Consensus 165 ~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp--~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP--TVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -----CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC--CCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred CCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECC--CCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 579999999999999999876654555667788999999999998 5 489999999999999999863321
Q ss_pred ccc-cceeeccccee--EEEeeeCCEEEEeeCCCeEEEEEcCC
Q 038537 217 FNH-GGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAE 256 (358)
Q Consensus 217 ~~~-~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~ 256 (358)
... ......|...+ .+++|++++|++++.||.|++|+...
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 111 00113444555 45677899999999999999999874
No 64
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.6e-37 Score=259.76 Aligned_cols=256 Identities=20% Similarity=0.314 Sum_probs=209.2
Q ss_pred CCceeeeeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceE
Q 038537 17 PDCVERGFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVS 93 (358)
Q Consensus 17 ~~~~~~~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 93 (358)
++.++..++++|.+.|++++++ +++|+||+.||+|+|||+...+....... ..+.+|...|.
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~---------------~~l~~h~~~V~ 90 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ---------------RALRGHSHFVS 90 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEE---------------EEECCCSSCEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceee---------------EEEeCCCCCEE
Confidence 3445667899999999999885 46999999999999999987654322111 24478999999
Q ss_pred EEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeee
Q 038537 94 CMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTM 173 (358)
Q Consensus 94 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 173 (358)
+++|+|++++|++|+.|+.|++|+..... .......+...+..+.+++++..|++++.|+.+++||+... .....
T Consensus 91 ~~~~s~dg~~l~s~~~d~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~---~~~~~ 165 (340)
T 4aow_A 91 DVVISSDGQFALSGSWDGTLRLWDLTTGT--TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV---CKYTV 165 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC---EEEEE
T ss_pred EEEECCCCCEEEEEcccccceEEeecccc--eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC---ceEEE
Confidence 99999999999999999999999998877 55666677888999999999999999999999999998532 23445
Q ss_pred eecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eeeCCEEEEeeCCCeEEE
Q 038537 174 TLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAIEKLIFSGSEDTTIRV 251 (358)
Q Consensus 174 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~i 251 (358)
....|...+..+++++.....++++++.|+.|++||++.. .....+.+|...+.++ +|++++|++|+.||.|++
T Consensus 166 ~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~i 241 (340)
T 4aow_A 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC----KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAML 241 (340)
T ss_dssp CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT----EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC----ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 5667889999999998666778999999999999999873 3444566777777554 567899999999999999
Q ss_pred EEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 252 WRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 252 wd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
||+.+. +++..+.. ...|.++.|+|+ + .+++++.|+.|++||++.
T Consensus 242 wd~~~~----~~~~~~~~-~~~v~~~~~~~~------~-~~~~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 242 WDLNEG----KHLYTLDG-GDIINALCFSPN------R-YWLCAATGPSIKIWDLEG 286 (340)
T ss_dssp EETTTT----EEEEEEEC-SSCEEEEEECSS------S-SEEEEEETTEEEEEETTT
T ss_pred EEeccC----ceeeeecC-CceEEeeecCCC------C-ceeeccCCCEEEEEECCC
Confidence 999988 45666654 468999999997 4 455667799999999874
No 65
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=7.7e-38 Score=269.99 Aligned_cols=275 Identities=13% Similarity=0.217 Sum_probs=212.9
Q ss_pred EEeeeCCCcEEEEeCCCce----eeeeeeecccceEEEEe---cCCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 2 VFTGSSSTRIRVWRQPDCV----ERGFIKARHGEVRAILA---HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~----~~~~~~~h~~~v~~i~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
+++++.||.|+||++.... ....+.+|.+.|.++.+ ++++|++|+.||.|++||+.++.......
T Consensus 50 ~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~-------- 121 (402)
T 2aq5_A 50 ICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR-------- 121 (402)
T ss_dssp EBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBC--------
T ss_pred EEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccC--------
Confidence 4568899999999986542 34567899999999988 46799999999999999998764322110
Q ss_pred eeeeecCCCccccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCcccccccc--cccccCeEEEEEcCCCCEEEEE
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCVDSF--VAHESNVNAIVVNQDDGFVFTC 151 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~ 151 (358)
.+...+.+|...|.+++|+|++ .+|++|+.||.|++||+.+++ .+..+ ..|...|.+++|+|++++|+++
T Consensus 122 -----~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 122 -----EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA--AVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp -----SCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE--EEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred -----CceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC--ccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 1112457899999999999998 699999999999999999887 66666 7899999999999999999999
Q ss_pred eCCCcEEEEEceecCCcceeeeee-cccCCc-eeEEEEeecCCCcEEEEe---ecCCcEEEEEccCCcCCccccceeecc
Q 038537 152 SSDGSVKIWRRVYRENSHTLTMTL-KFQQSS-VNALALSSFFDNYFLYSG---SSDGSINFWEKDKMSGGFNHGGFLQGH 226 (358)
Q Consensus 152 ~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~~~~~~~~~~~~ 226 (358)
+.||.|++||+++++ ....+ ..|... +.++.|+| ++.+|++| +.|+.|++||++......... ...+
T Consensus 195 ~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~--~~~~ 266 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGT----VVAEKDRPHEGTRPVHAVFVS--EGKILTTGFSRMSERQVALWDTKHLEEPLSLQ--ELDT 266 (402)
T ss_dssp ETTSEEEEEETTTTE----EEEEEECSSCSSSCCEEEECS--TTEEEEEEECTTCCEEEEEEETTBCSSCSEEE--ECCC
T ss_pred ecCCcEEEEeCCCCc----eeeeeccCCCCCcceEEEEcC--CCcEEEEeccCCCCceEEEEcCccccCCceEE--eccC
Confidence 999999999996543 23333 455554 89999998 89999999 789999999998754322211 1123
Q ss_pred ccee--EEEeeeCCEEE-EeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 227 CFAV--LCLVAIEKLIF-SGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 227 ~~~~--~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
...+ .++++++++|+ +|+.||.|++||+.+++.....+..+. |..+|.+++|+|+ +.++++ .|+.+++
T Consensus 267 ~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~------~~~~~s--~~~~~~~ 337 (402)
T 2aq5_A 267 SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPK------RGLEVN--KCEIARF 337 (402)
T ss_dssp CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCG------GGSCGG--GTEEEEE
T ss_pred CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEecc------ccccee--cceeEEE
Confidence 3333 55677888886 555799999999998853122333333 6689999999999 666654 4669999
Q ss_pred EEeee
Q 038537 304 WRVKV 308 (358)
Q Consensus 304 w~~~~ 308 (358)
|++..
T Consensus 338 ~~l~~ 342 (402)
T 2aq5_A 338 YKLHE 342 (402)
T ss_dssp EEEET
T ss_pred EEcCC
Confidence 99985
No 66
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-37 Score=270.87 Aligned_cols=281 Identities=11% Similarity=0.148 Sum_probs=222.8
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++|+.||.|++|| .+++.+..+..|...|.++.+ ++++|++++.||.|++||+.+++...............
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--- 197 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI--- 197 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce---
Confidence 478999999999999 677888899999999999988 57799999999999999998876554332211100000
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
...........+.+++|+|++ .+++++.||.|++||+.+++ .+..+..|...|.+++|+|++++|++++.||.|+
T Consensus 198 --~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~ 272 (425)
T 1r5m_A 198 --NAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT--PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLR 272 (425)
T ss_dssp ----------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS--CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred --eeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc--eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 000011222338999999875 58889999999999999887 6777788999999999999999999999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeE--EEeee
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL--CLVAI 236 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 236 (358)
+||++.++. ...+..|...+.+++|+| ++ ++++++.|+.|++||+++. .....+..|...+. +++++
T Consensus 273 i~d~~~~~~----~~~~~~~~~~i~~~~~~~--~~-~l~~~~~d~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~s~~ 341 (425)
T 1r5m_A 273 IWHGGNGNS----QNCFYGHSQSIVSASWVG--DD-KVISCSMDGSVRLWSLKQN----TLLALSIVDGVPIFAGRISQD 341 (425)
T ss_dssp EECSSSBSC----SEEECCCSSCEEEEEEET--TT-EEEEEETTSEEEEEETTTT----EEEEEEECTTCCEEEEEECTT
T ss_pred EEECCCCcc----ceEecCCCccEEEEEECC--CC-EEEEEeCCCcEEEEECCCC----cEeEecccCCccEEEEEEcCC
Confidence 999976543 344456889999999998 77 9999999999999999873 33344555665654 45667
Q ss_pred CCEEEEeeCCCeEEEEEcCCCce----------------eeeeeeeecCccc--ceEEEEeecccceeeeCeEEEEccCC
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGC----------------YHECLAVLDGHRG--PVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~h~~--~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
+++|++++.||.|++||+.+++. ..+++..+.+|.. .|++++|+|+ +.+|++++.|
T Consensus 342 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~d 415 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCA------GNKISVAYSL 415 (425)
T ss_dssp SSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTT------SSEEEEEESS
T ss_pred CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCC------CceEEEEecC
Confidence 89999999999999999987630 0116788888976 9999999999 8899999999
Q ss_pred CcEEEEEee
Q 038537 299 QTFKVWRVK 307 (358)
Q Consensus 299 g~v~iw~~~ 307 (358)
|.|++|+++
T Consensus 416 g~i~iw~~~ 424 (425)
T 1r5m_A 416 QEGSVVAIP 424 (425)
T ss_dssp SCCEEEECC
T ss_pred ceEEEEeec
Confidence 999999985
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-37 Score=270.43 Aligned_cols=286 Identities=12% Similarity=0.161 Sum_probs=208.2
Q ss_pred CEEeeeCCCcEEEEeCCC---ce---eeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecc---cccccccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPD---CV---ERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFT---VSDNFRTKKVTT 69 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~---~~---~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~---~~~~~~~~~~~~ 69 (358)
+|++|+.||+|+|||+.+ +. .... ..|...|.++.+ ++++|++|+.||.|++||+. .++........
T Consensus 78 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~- 155 (437)
T 3gre_A 78 YLITGSDQGVIKIWNLKEIIVGEVYSSSLT-YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE- 155 (437)
T ss_dssp EEEEEETTSEEEEEEHHHHHTTCCCSCSEE-EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE-
T ss_pred EEEEecCCceEEEeECcccccCcccceeee-ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc-
Confidence 489999999999999865 33 2222 259999999988 46799999999999999995 33332211111
Q ss_pred cCCCceeeeecCCCccccCCCceEEEE--EeCCCCEEEEEecCCeEEEEEccCCcccccccccc--cccCeEEEEEcCCC
Q 038537 70 LPRRSSFLSFSKSNTQQQHRDCVSCMA--FYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA--HESNVNAIVVNQDD 145 (358)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~ 145 (358)
....+.+.+ .++...+.++. +++++.+|++|+.|+.|++||+++++ .+..+.. |...|++++|+|++
T Consensus 156 ---~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~s~~~ 226 (437)
T 3gre_A 156 ---CIRKINLKN----FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLE--RLQIIENSPRHGAVSSICIDEEC 226 (437)
T ss_dssp ---EEEEEEGGG----GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCC--EEEEEECCGGGCCEEEEEECTTS
T ss_pred ---eeEEEEccC----cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCe--eeEEEccCCCCCceEEEEECCCC
Confidence 000010100 11667788888 56889999999999999999999887 6677766 88999999999999
Q ss_pred CEEEEEeCCCcEEEEEceecCCcceeeeeec-ccCCceeEEEEeec--CCCcEEEEeecCCcEEEEEccCCcCCccccc-
Q 038537 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLK-FQQSSVNALALSSF--FDNYFLYSGSSDGSINFWEKDKMSGGFNHGG- 221 (358)
Q Consensus 146 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 221 (358)
++|++|+.||.|++||++++. ....+. .|...|.+++++|. +++.+|++|+.||.|++||+++.........
T Consensus 227 ~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 302 (437)
T 3gre_A 227 CVLILGTTRGIIDIWDIRFNV----LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINS 302 (437)
T ss_dssp CEEEEEETTSCEEEEETTTTE----EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESS
T ss_pred CEEEEEcCCCeEEEEEcCCcc----EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcC
Confidence 999999999999999996543 333333 56779999977763 3678999999999999999986432111100
Q ss_pred -------------------eeec--ccceeEEEee-eCCEEEEeeCCCeEEEEEcCCCceeeeeee--------------
Q 038537 222 -------------------FLQG--HCFAVLCLVA-IEKLIFSGSEDTTIRVWRRAEGGCYHECLA-------------- 265 (358)
Q Consensus 222 -------------------~~~~--~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------- 265 (358)
.+.+ |...+.++.+ ++++|++|+.||.|++||+.+++.......
T Consensus 303 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (437)
T 3gre_A 303 DEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVT 382 (437)
T ss_dssp SSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEE
T ss_pred CCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEee
Confidence 0112 4444544444 567999999999999999998753221110
Q ss_pred -------------------eecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 266 -------------------VLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 266 -------------------~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
....|...|++++|+++.+ +.+|++|+.||.|+||+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~----~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 383 ANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDE----TPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp TTEEEEEEECC-------------CCCEEEEEEEESSS----SEEEEEEETTSCEEEEC
T ss_pred cceEEEEEecccccccccCcccccccceeeEeeeccCC----ceEEEEEcCCceEEEeC
Confidence 1122899999999999844 67999999999999995
No 68
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.1e-36 Score=258.30 Aligned_cols=252 Identities=12% Similarity=0.031 Sum_probs=208.8
Q ss_pred eeeecccceEEEEe--cCCEEEEEeCCceEEEEeccccc--ccccccccccCCCceeeeecCCCccccCCCceEEEEEeC
Q 038537 24 FIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSD--NFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99 (358)
Q Consensus 24 ~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 99 (358)
.+..|..+|.++.+ ++++|++++.||.|++||+.+++ .. ..+.+|...|.+++|+|
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~--------------------~~~~~h~~~v~~~~~~~ 62 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV--------------------HELKEHNGQVTGVDWAP 62 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE--------------------EEEECCSSCEEEEEEET
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEee--------------------eeecCCCCcccEEEEeC
Confidence 34568899999987 57799999999999999998764 22 13468999999999999
Q ss_pred CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccC
Q 038537 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ 179 (358)
Q Consensus 100 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 179 (358)
++++|++++.||.|++||+.+++......+..|...|.+++|+|++++|++++.||.|++||++..............|.
T Consensus 63 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~ 142 (372)
T 1k8k_C 63 DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIR 142 (372)
T ss_dssp TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCC
T ss_pred CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccC
Confidence 99999999999999999998887444555577899999999999999999999999999999987654333444446678
Q ss_pred CceeEEEEeecCCCcEEEEeecCCcEEEEEccCCc--------------CCccccceeecccceeEE--EeeeCCEEEEe
Q 038537 180 SSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMS--------------GGFNHGGFLQGHCFAVLC--LVAIEKLIFSG 243 (358)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 243 (358)
..|.+++|+| ++.+|++++.||.|++||++... ........+.+|...+.+ +++++++|+++
T Consensus 143 ~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 220 (372)
T 1k8k_C 143 STVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 220 (372)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred CCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEE
Confidence 9999999998 89999999999999999975311 012233334466666655 45678999999
Q ss_pred eCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 244 SEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 244 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+.||.|++||+.++ +++..+..|..+|++++|+|+ +.+|+++ .||.|++|+++.
T Consensus 221 ~~d~~i~i~d~~~~----~~~~~~~~~~~~v~~~~~~~~------~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 221 SHDSTVCLADADKK----MAVATLASETLPLLAVTFITE------SSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ETTTEEEEEEGGGT----TEEEEEECSSCCEEEEEEEET------TEEEEEE-TTSSCEEEEEET
T ss_pred eCCCEEEEEECCCC----ceeEEEccCCCCeEEEEEecC------CCEEEEE-eCCeEEEEEccC
Confidence 99999999999988 567788899999999999999 7888887 899999999986
No 69
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-36 Score=260.59 Aligned_cols=295 Identities=17% Similarity=0.199 Sum_probs=210.9
Q ss_pred cEEEEeCCCceee----eeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCC
Q 038537 10 RIRVWRQPDCVER----GFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSN 83 (358)
Q Consensus 10 ~v~vw~~~~~~~~----~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
...+|+....+.. .....|...|.++.+ ++++|++|+ ++.+++|++.+++.+........... .. ......
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~-~~-~~~~~~ 117 (393)
T 1erj_A 41 YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK-DP-ENLNTS 117 (393)
T ss_dssp CEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC----------------
T ss_pred eEEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCcccccc-cc-cccccc
Confidence 3457776543321 223369999999977 577888876 78999999988766543221110000 00 000000
Q ss_pred ccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEce
Q 038537 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRV 163 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 163 (358)
....+...|++++|+|++++|++|+.|+.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus 118 ~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~ 195 (393)
T 1erj_A 118 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK--IVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195 (393)
T ss_dssp ---CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc--EEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC
Confidence 112344569999999999999999999999999999887 677888999999999999999999999999999999997
Q ss_pred ecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccc---ceeecccceeEEE--eeeCC
Q 038537 164 YRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG---GFLQGHCFAVLCL--VAIEK 238 (358)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~ 238 (358)
+++... .+ .+...+.+++++| .++.+|++|+.|+.|++||+++........ ....+|...+.++ +++++
T Consensus 196 ~~~~~~----~~-~~~~~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 196 TGQCSL----TL-SIEDGVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp TTEEEE----EE-ECSSCEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred CCeeEE----EE-EcCCCcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC
Confidence 654322 22 2467789999987 478899999999999999998743221111 1124566666554 56789
Q ss_pred EEEEeeCCCeEEEEEcCCCcee--------eeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 239 LIFSGSEDTTIRVWRRAEGGCY--------HECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 239 ~l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
+|++|+.||.|++||+.+.... ..+...+.+|...|.+++|+|+ +.+|++|+.||.|++||++.
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~sgs~D~~v~iwd~~~-- 341 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN------DEYILSGSKDRGVLFWDKKS-- 341 (393)
T ss_dssp EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGG------GCEEEEEETTSEEEEEETTT--
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCC------CCEEEEEeCCCeEEEEECCC--
Confidence 9999999999999999864211 1345567799999999999999 88999999999999999874
Q ss_pred CCcceeecccccCCCCc
Q 038537 311 DQEKTMCLDYSDYHSNS 327 (358)
Q Consensus 311 ~~~~~~~~~~~~~~~~~ 327 (358)
..++..+.+|...
T Consensus 342 ----~~~~~~l~~h~~~ 354 (393)
T 1erj_A 342 ----GNPLLMLQGHRNS 354 (393)
T ss_dssp ----CCEEEEEECCSSC
T ss_pred ----CeEEEEECCCCCC
Confidence 2344455566544
No 70
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.5e-37 Score=267.16 Aligned_cols=292 Identities=11% Similarity=0.154 Sum_probs=211.1
Q ss_pred CEEeeeCCCcEEEEeCCCce-----------eeeeeeecc------------cceEEEEec--C--CEEEEEeCCceEEE
Q 038537 1 MVFTGSSSTRIRVWRQPDCV-----------ERGFIKARH------------GEVRAILAH--D--NMLFTTNKDCKIRI 53 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~-----------~~~~~~~h~------------~~v~~i~~~--~--~~l~s~~~dg~i~i 53 (358)
+||+|+.||.|+|||+.+++ ....+.+|. ..|.++.+. + .+|++++.||.|++
T Consensus 42 ~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~i 121 (447)
T 3dw8_B 42 LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKL 121 (447)
T ss_dssp EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEE
T ss_pred EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEE
Confidence 48999999999999998776 577888998 889999884 3 58999999999999
Q ss_pred Eeccccccccccccc-c---------------cCC---CceeeeecCCCc-cccCCCceEEEEEeCCCCEEEEEecCCeE
Q 038537 54 WNFTVSDNFRTKKVT-T---------------LPR---RSSFLSFSKSNT-QQQHRDCVSCMAFYHAEGLLYTGSFDKTV 113 (358)
Q Consensus 54 w~~~~~~~~~~~~~~-~---------------~~~---~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~~dg~i 113 (358)
||+............ . .+. ........+... ..+|...|++++|+|++++|++| .|+.|
T Consensus 122 w~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i 200 (447)
T 3dw8_B 122 WKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRI 200 (447)
T ss_dssp EEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEE
T ss_pred EecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeE
Confidence 999865432110000 0 000 000000000111 36899999999999999999998 79999
Q ss_pred EEEEccCCcccccc-------cccccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEceecCCcceeeeeecccCC-----
Q 038537 114 KAWRVLDKRCTCVD-------SFVAHESNVNAIVVNQDD-GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQS----- 180 (358)
Q Consensus 114 ~iwd~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~----- 180 (358)
++||+..... ... .+..|...|.+++|+|++ ++|++|+.||.|++||++++.........+..|..
T Consensus 201 ~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 279 (447)
T 3dw8_B 201 NLWHLEITDR-SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRS 279 (447)
T ss_dssp EEEETTEEEE-EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CC
T ss_pred EEEECCCCCc-eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccc
Confidence 9999984331 222 466899999999999998 99999999999999999876642222334444554
Q ss_pred -------ceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccce-----------------eEEEeee
Q 038537 181 -------SVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFA-----------------VLCLVAI 236 (358)
Q Consensus 181 -------~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 236 (358)
.|.+++|+| ++.+|++++. +.|++||++.... ....+.+|... ..+++++
T Consensus 280 ~~~~~~~~v~~~~~s~--~g~~l~~~~~-~~v~iwd~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~ 353 (447)
T 3dw8_B 280 FFSEIISSISDVKFSH--SGRYMMTRDY-LSVKVWDLNMENR---PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGS 353 (447)
T ss_dssp HHHHHTTCEEEEEECT--TSSEEEEEES-SEEEEEETTCCSS---CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTT
T ss_pred cccccCceEEEEEECC--CCCEEEEeeC-CeEEEEeCCCCcc---ccceeeccccccccccccccccccccceEEEECCC
Confidence 899999998 9999999998 9999999986221 22224444321 1688999
Q ss_pred CCEEEEeeCCCeEEEEEcCCCceeeeeee----------------------------eecCcccceEEEEeecccceeee
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCYHECLA----------------------------VLDGHRGPVRCLAASLEMEKVVM 288 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------------~~~~h~~~v~~i~~~~~~~~~~~ 288 (358)
+++|++|+.||.|++||+.+++...-... ....+...|..++|+|+
T Consensus 354 ~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~------ 427 (447)
T 3dw8_B 354 DSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPK------ 427 (447)
T ss_dssp SSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSS------
T ss_pred CCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCC------
Confidence 99999999999999999998753110000 00133467899999999
Q ss_pred CeEEEEccCCCcEEEEEee
Q 038537 289 GFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 289 ~~~l~s~~~dg~v~iw~~~ 307 (358)
+.+|++++.++ +.+|.-+
T Consensus 428 ~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 428 ENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp SSEEEEECSSC-EEEEECC
T ss_pred CCEEEEEecce-eeeeccc
Confidence 88999998875 7788643
No 71
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5e-37 Score=282.65 Aligned_cols=254 Identities=20% Similarity=0.332 Sum_probs=205.3
Q ss_pred eeeeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEE
Q 038537 21 ERGFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAF 97 (358)
Q Consensus 21 ~~~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 97 (358)
....+.+|.+.|+++++. +++|++|+.||+|++|++.......... ...+.+|...|.+++|
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~---------------~~~~~~h~~~v~~v~~ 438 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVA---------------QRRLTGHSHFVEDVVL 438 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEE---------------EEEEECCSSCEEEEEE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccc---------------cceecCCCCcEEEEEE
Confidence 445688999999999884 4689999999999999998654321111 0134789999999999
Q ss_pred eCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecc
Q 038537 98 YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKF 177 (358)
Q Consensus 98 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 177 (358)
+|++++|++|+.||.|++||+.+++ ....+.+|...|.+++|+|++++|++++.|+.|++||+.... ..........
T Consensus 439 s~~g~~l~sgs~Dg~v~vwd~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~ 515 (694)
T 3dm0_A 439 SSDGQFALSGSWDGELRLWDLAAGV--STRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC-KYTISEGGEG 515 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EEEECSSTTS
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCc--ceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc-ceeeccCCCC
Confidence 9999999999999999999999887 677888999999999999999999999999999999974321 1222223356
Q ss_pred cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEE--EeeeCCEEEEeeCCCeEEEEEcC
Q 038537 178 QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIFSGSEDTTIRVWRRA 255 (358)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~ 255 (358)
|...|.+++|+|......+++++.|+.|++||++.. .....+.+|...+.+ +++++++|++|+.||.|++||+.
T Consensus 516 h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~ 591 (694)
T 3dm0_A 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC----KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA 591 (694)
T ss_dssp CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTC----CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred CCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCC----cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 888999999998333478999999999999999873 344456778777755 55678999999999999999999
Q ss_pred CCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 256 EGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 256 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
++ +.+..+. +...|.+++|+|+ +.+|++++ |+.|++||++.
T Consensus 592 ~~----~~~~~~~-~~~~v~~~~~sp~------~~~l~~~~-~~~i~iwd~~~ 632 (694)
T 3dm0_A 592 EG----KKLYSLE-ANSVIHALCFSPN------RYWLCAAT-EHGIKIWDLES 632 (694)
T ss_dssp TT----EEEECCB-CSSCEEEEEECSS------SSEEEEEE-TTEEEEEETTT
T ss_pred CC----ceEEEec-CCCcEEEEEEcCC------CcEEEEEc-CCCEEEEECCC
Confidence 98 4455554 4567999999999 77777765 56799999974
No 72
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.9e-36 Score=254.79 Aligned_cols=264 Identities=16% Similarity=0.227 Sum_probs=210.5
Q ss_pred eeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC
Q 038537 22 RGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99 (358)
Q Consensus 22 ~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 99 (358)
...+.+|.+.|.++.+ ++++|++|+.||.|++||+.+....... ...+.+|...|++++|+|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~ 67 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWEL----------------SDSWRAHDSSIVAIDWAS 67 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEE----------------EEEEECCSSCEEEEEECC
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCccee----------------cceeccCCCcEEEEEEcC
Confidence 3566899999999987 5779999999999999999865432111 113468999999999999
Q ss_pred --CCCEEEEEecCCeEEEEEccCCcc-------cccccccccccCeEEEEEcCC--CCEEEEEeCCCcEEEEEceecCCc
Q 038537 100 --AEGLLYTGSFDKTVKAWRVLDKRC-------TCVDSFVAHESNVNAIVVNQD--DGFVFTCSSDGSVKIWRRVYRENS 168 (358)
Q Consensus 100 --~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~ 168 (358)
++++|++|+.||.|++||+.+++. ..+..+..|...|.+++|+|+ +.++++++.||.|++||+++++..
T Consensus 68 ~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp GGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCT
T ss_pred CCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHh
Confidence 589999999999999999987632 246677789999999999999 999999999999999999877654
Q ss_pred ceeee---------eecccCCceeEEEEeec-CCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eee
Q 038537 169 HTLTM---------TLKFQQSSVNALALSSF-FDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAI 236 (358)
Q Consensus 169 ~~~~~---------~~~~~~~~i~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 236 (358)
..+.. ....+...+.+++|+|. .++.++++++.++.+.+|+..... ......+.+|...+.++ +|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~i~~~~~~p~ 225 (351)
T 3f3f_A 148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK--LHVAAKLPGHKSLIRSISWAPS 225 (351)
T ss_dssp TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC--EEEEEECCCCCSCEEEEEECCC
T ss_pred ccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc--eeeeeecCCCCcceeEEEECCC
Confidence 33221 11256788999999982 128899999999999888776532 22234456777777555 456
Q ss_pred C----CEEEEeeCCCeEEEEEcCCCce------------------------------------------eeeeeeeecCc
Q 038537 237 E----KLIFSGSEDTTIRVWRRAEGGC------------------------------------------YHECLAVLDGH 270 (358)
Q Consensus 237 ~----~~l~~~~~dg~i~iwd~~~~~~------------------------------------------~~~~~~~~~~h 270 (358)
+ ++|++|+.||.|++||++.+.. ..+.+..+.+|
T Consensus 226 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 305 (351)
T 3f3f_A 226 IGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 305 (351)
T ss_dssp SSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTT
T ss_pred CCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence 6 6899999999999999986421 12567778899
Q ss_pred ccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 271 RGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 271 ~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
...|++++|+|+ +.+|++++.||.|++|++...
T Consensus 306 ~~~v~~~~~s~~------~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 306 NGEVWSVSWNLT------GTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp SSCEEEEEECSS------SCCEEEEETTSCEEEEEECTT
T ss_pred cccEEEEEEcCC------CCEEEEecCCCcEEEEecCcC
Confidence 999999999999 889999999999999999854
No 73
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.4e-36 Score=261.72 Aligned_cols=255 Identities=16% Similarity=0.217 Sum_probs=206.6
Q ss_pred eeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC
Q 038537 21 ERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA 100 (358)
Q Consensus 21 ~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 100 (358)
....+.+|.+.|.++++++++|++|+.||.|++|++.+.+...... ....+.+|...|.+++|+|+
T Consensus 8 ~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~~~~ 73 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKD--------------KSYSHFVHKSGLHHVDVLQA 73 (397)
T ss_dssp EEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGG--------------GEEEEECCTTCEEEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCC--------------cceEEecCCCcEEEEEEecc
Confidence 3456779999999999999999999999999999998776221111 11234689999999999999
Q ss_pred ----C---CEEEEEecCCeEEEEEccCCcccc-----ccccccc-----ccCeEEEEEc----CCCCE-EEEEeCCCcEE
Q 038537 101 ----E---GLLYTGSFDKTVKAWRVLDKRCTC-----VDSFVAH-----ESNVNAIVVN----QDDGF-VFTCSSDGSVK 158 (358)
Q Consensus 101 ----~---~~l~~~~~dg~i~iwd~~~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~ 158 (358)
+ ++|++++.||.|++||+.+++ . ...+..| ...|.+++|+ |++++ |++++.||.|+
T Consensus 74 ~~~~g~~~~~l~s~~~dg~i~iw~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (397)
T 1sq9_A 74 IERDAFELCLVATTSFSGDLLFYRITRED--ETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTY 151 (397)
T ss_dssp EETTTEEEEEEEEEETTSCEEEEEEEECT--TTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEE
T ss_pred cccCCccccEEEEEcCCCCEEEEEccCCc--ccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEE
Confidence 9 999999999999999998876 4 5666677 5899999999 99999 99999999999
Q ss_pred EEEcee------cCCcc-eeeeee-------cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceee
Q 038537 159 IWRRVY------RENSH-TLTMTL-------KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ 224 (358)
Q Consensus 159 ~wd~~~------~~~~~-~~~~~~-------~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 224 (358)
+||++. ..... .....+ ..|...+.+++|+| ++ ++++++.||.|++||+++. .....+.
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~----~~~~~~~ 224 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTL----RPLYNFE 224 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTT----EEEEEEE
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCC----ceeEEEe
Confidence 999987 44332 111122 34788999999998 88 9999999999999999873 3333344
Q ss_pred c---c---cceeE--EEeeeCCEEEEeeCC---CeEEEEEcCCCceeeeeeeeecC-------------cccceEEEEee
Q 038537 225 G---H---CFAVL--CLVAIEKLIFSGSED---TTIRVWRRAEGGCYHECLAVLDG-------------HRGPVRCLAAS 280 (358)
Q Consensus 225 ~---~---~~~~~--~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~-------------h~~~v~~i~~~ 280 (358)
. | ...+. ++++++++|++++.| |.|++||+.++ +++..+.+ |...|++++|+
T Consensus 225 ~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 300 (397)
T 1sq9_A 225 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG----ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 300 (397)
T ss_dssp CCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC----CEEEEECBC--------CCBSBSSCEEEEEEC
T ss_pred ccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC----cccceeccCcccccccccccccCCcEEEEEEC
Confidence 4 5 55554 455688999999999 99999999988 56677777 99999999999
Q ss_pred cccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 281 LEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 281 ~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
|+ +.+|++++.||.|++||++.
T Consensus 301 ~~------~~~l~~~~~dg~i~iwd~~~ 322 (397)
T 1sq9_A 301 DS------GETLCSAGWDGKLRFWDVKT 322 (397)
T ss_dssp SS------SSEEEEEETTSEEEEEETTT
T ss_pred CC------CCEEEEEeCCCeEEEEEcCC
Confidence 99 88999999999999999974
No 74
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.8e-35 Score=259.98 Aligned_cols=278 Identities=18% Similarity=0.309 Sum_probs=219.8
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe----cCCEEEEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA----HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~----~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
+|++|+.||+|++||+.+++.+..+.+|...|.++.+ ++.++++|+.||.|++||+.+............. ...
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~--~~~ 252 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY--PLV 252 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS--SEE
T ss_pred EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc--ceE
Confidence 4799999999999999999999999999999999876 3579999999999999999876544321111000 000
Q ss_pred eeec-----CCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEE
Q 038537 77 LSFS-----KSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC 151 (358)
Q Consensus 77 ~~~~-----~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 151 (358)
.... ....+.+|...|.++ +++++++++|+.||.|++||+.+++ .+..+.+|...|.+++|+|+++.+++|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg 328 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMK--CLYILSGHTDRIYSTIYDHERKRCISA 328 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred eeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCc--EEEEecCCCCCEEEEEEcCCCCEEEEE
Confidence 0000 012456888889887 5678899999999999999999887 778888999999999999999999999
Q ss_pred eCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeE
Q 038537 152 SSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL 231 (358)
Q Consensus 152 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 231 (358)
+.||.|++||++++ .....+..|...|.+++++ +.+|++++.||.|++||+++...... ....+...+.
T Consensus 329 ~~dg~i~vwd~~~~----~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~v~vwd~~~~~~~~~---~~~~~~~~~~ 397 (464)
T 3v7d_B 329 SMDTTIRIWDLENG----ELMYTLQGHTALVGLLRLS----DKFLVSAAADGSIRGWDANDYSRKFS---YHHTNLSAIT 397 (464)
T ss_dssp ETTSCEEEEETTTT----EEEEEECCCSSCEEEEEEC----SSEEEEEETTSEEEEEETTTCCEEEE---EECTTCCCEE
T ss_pred eCCCcEEEEECCCC----cEEEEEeCCCCcEEEEEEc----CCEEEEEeCCCcEEEEECCCCceeee---ecCCCCccEE
Confidence 99999999999654 3455667899999999985 57999999999999999987432211 1234456678
Q ss_pred EEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeee-ecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 232 CLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAV-LDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 232 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
+++++++++++|+ ||.|++||+.+++ ++.. +.+|...|.+++|++ ..++++++.||.+.+|-++
T Consensus 398 ~~~~~~~~l~~~~-dg~i~iwd~~~g~----~~~~~~~~~~~~v~~v~~~~-------~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 398 TFYVSDNILVSGS-ENQFNIYNLRSGK----LVHANILKDADQIWSVNFKG-------KTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp EEEECSSEEEEEE-TTEEEEEETTTCC----EEESCTTTTCSEEEEEEEET-------TEEEEEEEETTEEEEEEEE
T ss_pred EEEeCCCEEEEec-CCeEEEEECCCCc----EEehhhccCCCcEEEEEecC-------CEEEEEEEeCCeEEEEEee
Confidence 8999999999998 8999999999984 4543 667899999999984 4677888888877766543
No 75
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.4e-36 Score=253.34 Aligned_cols=235 Identities=16% Similarity=0.186 Sum_probs=187.4
Q ss_pred CEEeeeCCCcEEEEeCCCce--eeeeeeecccceEEEEec----CCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 1 MVFTGSSSTRIRVWRQPDCV--ERGFIKARHGEVRAILAH----DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~--~~~~~~~h~~~v~~i~~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
+||+|+.|++|+|||+.++. .+..+.+|.+.|.++.+. +++|++|+.|++|++||+.++.....
T Consensus 27 ~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~---------- 96 (316)
T 3bg1_A 27 RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKS---------- 96 (316)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEE----------
T ss_pred EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEE----------
Confidence 48999999999999998764 467889999999999873 68999999999999999986532111
Q ss_pred eeeeecCCCccccCCCceEEEEEeCC--CCEEEEEecCCeEEEEEccCCc-ccccccccccccCeEEEEEcCC-------
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHA--EGLLYTGSFDKTVKAWRVLDKR-CTCVDSFVAHESNVNAIVVNQD------- 144 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~------- 144 (358)
..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+.... ......+..|...|.+++|+|+
T Consensus 97 --------~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 168 (316)
T 3bg1_A 97 --------HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLI 168 (316)
T ss_dssp --------EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred --------EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccc
Confidence 133689999999999997 7899999999999999998753 2234566789999999999997
Q ss_pred ----------CCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCC----cEEEEeecCCcEEEEEc
Q 038537 145 ----------DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDN----YFLYSGSSDGSINFWEK 210 (358)
Q Consensus 145 ----------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~l~~~~~dg~i~i~d~ 210 (358)
+.+|++|+.|+.|++||++... .......+.+|...|.+++|+| ++ .+|++++.|++|++||+
T Consensus 169 ~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~-~~~~~~~l~~h~~~V~~v~~sp--~~~~~~~~las~s~D~~v~iw~~ 245 (316)
T 3bg1_A 169 DHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG-QWKEEQKLEAHSDWVRDVAWAP--SIGLPTSTIASCSQDGRVFIWTC 245 (316)
T ss_dssp --CCSCCCCCCCBEECCBTTSBCCEEEECTTS-CEEEEECCBCCSSCEEEEECCC--CSSCSCCEEEEEETTCEEEEEEC
T ss_pred ccccccCccccceEEEecCCCeEEEEEeCCCC-ccceeeecccCCCceEEEEecC--CCCCCCceEEEEcCCCeEEEEEc
Confidence 4689999999999999985332 1234456778999999999998 54 89999999999999998
Q ss_pred cCCcCCccccceeeccccee--EEEeeeCCEEEEeeCCCeEEEEEcCC
Q 038537 211 DKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAE 256 (358)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~ 256 (358)
+...........+..|...+ ++++|++++|++++.||.|++|+...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 246 DDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred cCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 86321111122344555555 45567889999999999999999864
No 76
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.9e-36 Score=255.92 Aligned_cols=259 Identities=14% Similarity=0.198 Sum_probs=209.0
Q ss_pred eeeecccceEEEEec------CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEE
Q 038537 24 FIKARHGEVRAILAH------DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAF 97 (358)
Q Consensus 24 ~~~~h~~~v~~i~~~------~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 97 (358)
...+|.++|.++.++ ...+++++.++.|++||+.+++.+....... ...|...|.+++|
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~---------------~~~~~~~v~~~~~ 77 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYV---------------DADADENFYTCAW 77 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEE---------------CSCTTCCEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeecc---------------ccCCCCcEEEEEe
Confidence 345899999999986 3467777778899999999776544322111 1247788999999
Q ss_pred eCC----CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceee
Q 038537 98 YHA----EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLT 172 (358)
Q Consensus 98 ~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 172 (358)
+|+ +.+|++|+.||.|++||+.+++ .+..+..|...|.+++|+| ++++|++++.||.|++||+++++ ..
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~ 151 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQ--CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDT----LV 151 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCC--EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTE----EE
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhce--EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCe----EE
Confidence 998 6799999999999999999887 6777888999999999999 99999999999999999996543 23
Q ss_pred eee---cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccc------------------------cceeec
Q 038537 173 MTL---KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH------------------------GGFLQG 225 (358)
Q Consensus 173 ~~~---~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~------------------------~~~~~~ 225 (358)
..+ ..|...|.+++|+| ++.+|++++.||.|++||+++....... ......
T Consensus 152 ~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T 3k26_A 152 AIFGGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229 (366)
T ss_dssp EEECSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS
T ss_pred EEecccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC
Confidence 333 57899999999998 9999999999999999999874211110 011223
Q ss_pred ccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCce----------eeeeeeeecCcccceEEEEeecccceeeeCeEEEEc
Q 038537 226 HCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGC----------YHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSS 295 (358)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~ 295 (358)
|...+.++.+++++|++++.||.|++||+.+... ....+..+..|...|++++|+|+.. +.+|++|
T Consensus 230 ~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~----~~~l~~~ 305 (366)
T 3k26_A 230 HRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFW----QKMLALG 305 (366)
T ss_dssp CSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTT----SSEEEEE
T ss_pred CcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCC----CcEEEEE
Confidence 7778888888899999999999999999987642 1134677888999999999999843 5799999
Q ss_pred cCCCcEEEEEeeeC
Q 038537 296 SLDQTFKVWRVKVM 309 (358)
Q Consensus 296 ~~dg~v~iw~~~~~ 309 (358)
+.||.|++||++..
T Consensus 306 ~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 306 NQVGKLYVWDLEVE 319 (366)
T ss_dssp CTTSCEEEEECCSS
T ss_pred ecCCcEEEEECCCC
Confidence 99999999999854
No 77
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.2e-36 Score=254.35 Aligned_cols=296 Identities=15% Similarity=0.157 Sum_probs=211.1
Q ss_pred eeeeecccceEEEEec--CC-EEEEEeC---CceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEE
Q 038537 23 GFIKARHGEVRAILAH--DN-MLFTTNK---DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMA 96 (358)
Q Consensus 23 ~~~~~h~~~v~~i~~~--~~-~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 96 (358)
..+.+|...|.++.++ +. ++++|+. ||.|++||+.+++..... ..+|...|.+++
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~-------------------~~~~~~~v~~~~ 72 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR-------------------EIEKAKPIKCGT 72 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE-------------------EEEESSCEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee-------------------eecccCcEEEEE
Confidence 4557899999999885 43 5556665 999999999876643221 136889999999
Q ss_pred EeCC---CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEE------cCCCCEEEEEeCCCcEEEEEceecCC
Q 038537 97 FYHA---EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVV------NQDDGFVFTCSSDGSVKIWRRVYREN 167 (358)
Q Consensus 97 ~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~dg~i~~wd~~~~~~ 167 (358)
|+|+ +.+|++|+.||.|++||+.+++ ..+..+..|...|.++.| +|++++|++++.||.|++||++.+..
T Consensus 73 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~ 151 (357)
T 3i2n_A 73 FGATSLQQRYLATGDFGGNLHIWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD 151 (357)
T ss_dssp CTTCCTTTCCEEEEETTSCEEEECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS
T ss_pred EcCCCCCCceEEEecCCCeEEEEeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC
Confidence 9998 6999999999999999998765 246677789999999955 67899999999999999999976652
Q ss_pred -cceeeeeecccCCceeEEE----EeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeE--EEee---eC
Q 038537 168 -SHTLTMTLKFQQSSVNALA----LSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL--CLVA---IE 237 (358)
Q Consensus 168 -~~~~~~~~~~~~~~i~~~~----~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~ 237 (358)
...+......+...+.+++ |+| ++.++++++.||.|++||+++... .....|...+. +++| ++
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~ 224 (357)
T 3i2n_A 152 PVANMEPVQGENKRDCWTVAFGNAYNQ--EERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNGVCSLEFDRKDISM 224 (357)
T ss_dssp CSEEECCCTTSCCCCEEEEEEECCCC---CCCEEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEESCSSSSC
T ss_pred cceeccccCCCCCCceEEEEEEeccCC--CCCEEEEEccCCeEEEEECccCce-----eeecCCCCceEEEEcCCCCCCC
Confidence 2222111111234788888 555 899999999999999999987432 22344555554 4556 78
Q ss_pred CEEEEeeCCCeEEEEEcCCCceeeee-eeeecCcccceEEEEeecccceeeeCe-EEEEccCCCcEEEEEeeeCCCCcce
Q 038537 238 KLIFSGSEDTTIRVWRRAEGGCYHEC-LAVLDGHRGPVRCLAASLEMEKVVMGF-LVYSSSLDQTFKVWRVKVMPDQEKT 315 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~h~~~v~~i~~~~~~~~~~~~~-~l~s~~~dg~v~iw~~~~~~~~~~~ 315 (358)
++|++++.||.|++||+++++..... ...+.+|...|++++|+|+ +. +|++++.||.|++||++........
T Consensus 225 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 298 (357)
T 3i2n_A 225 NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ------NRELFLTAGGAGGLHLWKYEYPIQRSKK 298 (357)
T ss_dssp CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETT------EEEEEEEEETTSEEEEEEEECCSCC--C
T ss_pred CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCC------CCcEEEEEeCCCcEEEeecCCCcccccc
Confidence 99999999999999999876321111 1234489999999999999 66 8999999999999999865433211
Q ss_pred eecccccCCCCccceeeecccCCCcccccccchhhh
Q 038537 316 MCLDYSDYHSNSKTTTTKMDYEMSPVLSPSWVEKKM 351 (358)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~W~~~~~ 351 (358)
..................+..+..+|.++.|++...
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 334 (357)
T 3i2n_A 299 DSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR 334 (357)
T ss_dssp CTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST
T ss_pred cCCCCccccccccceeeccccCCCCeeEEEEcCCCC
Confidence 111111111112233444555666777777766543
No 78
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.5e-35 Score=278.06 Aligned_cols=272 Identities=25% Similarity=0.335 Sum_probs=227.1
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++|+.||.|+|||+.+++.+..+.+|.++|.++.+ ++++|++|+.||.|++||+.+++...
T Consensus 27 ~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~--------------- 91 (814)
T 3mkq_A 27 WVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV--------------- 91 (814)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE---------------
T ss_pred EEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE---------------
Confidence 4789999999999999999999999999999999877 57899999999999999998776543
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSV 157 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 157 (358)
.+.+|...|++++|+|++++|++++.||.|++||+.++. .....+..|...|.+++|+| ++..+++++.||.|
T Consensus 92 -----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 92 -----DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW-ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV 165 (814)
T ss_dssp -----EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS-EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred -----EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc-eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence 336799999999999999999999999999999998763 25667778999999999999 88999999999999
Q ss_pred EEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeE--EEee
Q 038537 158 KIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVL--CLVA 235 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~ 235 (358)
++||+..+.....+. ..+...+.+++|+|.+++.++++++.||.|++||+++.. ....+.+|...+. +++|
T Consensus 166 ~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~ 238 (814)
T 3mkq_A 166 KVWSLGQSTPNFTLT---TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHP 238 (814)
T ss_dssp EEEETTCSSCSEEEE---CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE----EEEEEECCSSCEEEEEECS
T ss_pred EEEECCCCcceeEEe---cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcC
Confidence 999997654433222 234488999999987789999999999999999998733 3444566766664 4567
Q ss_pred eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 236 IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 236 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
++++|++++.||.|++||+.++ +.+..+..|...+.+++|+|++. ..+++++ .|+.+.+|++...
T Consensus 239 ~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 239 TLPIIISGSEDGTLKIWNSSTY----KVEKTLNVGLERSWCIATHPTGR----KNYIASG-FDNGFTVLSLGND 303 (814)
T ss_dssp SSSEEEEEETTSCEEEEETTTC----SEEEEECCSSSSEEEEEECTTCG----GGEEEEE-ETTEEEEEECSCC
T ss_pred CCCEEEEEeCCCeEEEEECCCC----cEEEEeecCCCcEEEEEEccCCC----ceEEEEE-eCCCEEEEEcCCC
Confidence 8899999999999999999988 56778888999999999999932 1145555 5677889987653
No 79
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.8e-35 Score=248.38 Aligned_cols=263 Identities=10% Similarity=0.064 Sum_probs=212.5
Q ss_pred CEEeeeCCCcEEEEeCCCce---eeeeeeecccceEEEEe--cCC-EEEEEeCCceEEEEec-ccccccccccccccCCC
Q 038537 1 MVFTGSSSTRIRVWRQPDCV---ERGFIKARHGEVRAILA--HDN-MLFTTNKDCKIRIWNF-TVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~---~~~~~~~h~~~v~~i~~--~~~-~l~s~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~ 73 (358)
+|++|+.||.|++|++.+++ ....+.+|...|.++.+ +++ +|++|+.||.|++||+ .+++..
T Consensus 25 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~----------- 93 (342)
T 1yfq_A 25 LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ----------- 93 (342)
T ss_dssp EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE-----------
T ss_pred EEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE-----------
Confidence 47899999999999998776 34566789999999877 578 9999999999999999 766431
Q ss_pred ceeeeecCCCcccc--CCCceEEEEEeCCCCEEEEEecCCeEEEEEccC---------CcccccccccccccCeEEEEEc
Q 038537 74 SSFLSFSKSNTQQQ--HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLD---------KRCTCVDSFVAHESNVNAIVVN 142 (358)
Q Consensus 74 ~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~~~~~ 142 (358)
.+.+ |...|.+++|+| +..|++++.|+.|++||+++ .+ ++..+. |...|.+++|+
T Consensus 94 ----------~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~-~~~~v~~~~~~ 159 (342)
T 1yfq_A 94 ----------ALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNL--NSNNTK-VKNKIFTMDTN 159 (342)
T ss_dssp ----------ECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEES--CSSSSS-SCCCEEEEEEC
T ss_pred ----------eccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCC--eeeEEe-eCCceEEEEec
Confidence 2356 999999999999 99999999999999999987 55 555555 88999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEcee-cCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCC--cCCccc
Q 038537 143 QDDGFVFTCSSDGSVKIWRRVY-RENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKM--SGGFNH 219 (358)
Q Consensus 143 ~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~ 219 (358)
|++ +++++.|+.|++||++. .... .......+...+.+++|+| .++.++++++.||.|++|+++.. ......
T Consensus 160 ~~~--l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~i~~i~~~~-~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 160 SSR--LIVGMNNSQVQWFRLPLCEDDN--GTIEESGLKYQIRDVALLP-KEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp SSE--EEEEESTTEEEEEESSCCTTCC--CEEEECSCSSCEEEEEECS-GGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred CCc--EEEEeCCCeEEEEECCcccccc--ceeeecCCCCceeEEEECC-CCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 877 99999999999999976 4322 2223345678899999985 15789999999999999999874 111233
Q ss_pred cceeecccc---------ee--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCc-ccceEEEEeecccceee
Q 038537 220 GGFLQGHCF---------AV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGH-RGPVRCLAASLEMEKVV 287 (358)
Q Consensus 220 ~~~~~~~~~---------~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~~~~~ 287 (358)
...+..|.. .+ .++++++++|++++.||.|++||+.++ +.+..+.+| ..+|++++ |+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~h~~~v~~~~--~~----- 303 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR----KKIKNFAKFNEDSVVKIA--CS----- 303 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT----EEEEECCCCSSSEEEEEE--EC-----
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH----hHhhhhhcccCCCceEec--CC-----
Confidence 334555532 55 455678899999999999999999998 567788888 99999999 88
Q ss_pred eCeEEEEccCCCc-EEEEE
Q 038537 288 MGFLVYSSSLDQT-FKVWR 305 (358)
Q Consensus 288 ~~~~l~s~~~dg~-v~iw~ 305 (358)
+.+|++++.||. .+.|.
T Consensus 304 -~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 304 -DNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -SSEEEEEEECTHHHHCSS
T ss_pred -CCeEEEEecCCccccccc
Confidence 889999999998 55554
No 80
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3e-35 Score=256.35 Aligned_cols=238 Identities=29% Similarity=0.531 Sum_probs=206.9
Q ss_pred eecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEE
Q 038537 26 KARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLY 105 (358)
Q Consensus 26 ~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 105 (358)
.+|...|.++.++++++++|+.||.|++||+.+++... .+.+|...|.+++| ++++|+
T Consensus 130 ~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~--------------------~~~~h~~~v~~l~~--~~~~l~ 187 (435)
T 1p22_A 130 SETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKR--------------------ILTGHTGSVLCLQY--DERVII 187 (435)
T ss_dssp CSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEE--------------------EECCCSSCEEEEEC--CSSEEE
T ss_pred cCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEE--------------------EEcCCCCcEEEEEE--CCCEEE
Confidence 45667899999999999999999999999998776542 33689999999999 788999
Q ss_pred EEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEE
Q 038537 106 TGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNAL 185 (358)
Q Consensus 106 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~ 185 (358)
+|+.||.|++||+.+++ .+..+..|...|.+++|+ +..+++|+.||.|++||+.++... ........|...|.++
T Consensus 188 sg~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~v~~~ 262 (435)
T 1p22_A 188 TGSSDSTVRVWDVNTGE--MLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDI-TLRRVLVGHRAAVNVV 262 (435)
T ss_dssp EEETTSCEEEEESSSCC--EEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCC-EEEEEECCCSSCEEEE
T ss_pred EEcCCCeEEEEECCCCc--EEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCc-eeeeEecCCCCcEEEE
Confidence 99999999999999988 778888999999999997 469999999999999999766433 2234566788999999
Q ss_pred EEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeee
Q 038537 186 ALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLA 265 (358)
Q Consensus 186 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 265 (358)
++ +++++++|+.||.|++||+++. .....+.+|...+.++.++++++++|+.||.|++||++++ +++.
T Consensus 263 ~~----~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~----~~~~ 330 (435)
T 1p22_A 263 DF----DDKYIVSASGDRTIKVWNTSTC----EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECG----ACLR 330 (435)
T ss_dssp EE----ETTEEEEEETTSEEEEEETTTC----CEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTC----CEEE
T ss_pred Ee----CCCEEEEEeCCCeEEEEECCcC----cEEEEEcCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCCC----CEEE
Confidence 88 5789999999999999999873 3445577888999999999999999999999999999998 6678
Q ss_pred eecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 266 VLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 266 ~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
.+.+|...|++++| + +.+|++|+.||.|++||++...
T Consensus 331 ~~~~h~~~v~~~~~--~------~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 331 VLEGHEELVRCIRF--D------NKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp EECCCSSCEEEEEC--C------SSEEEEEETTSCEEEEEHHHHT
T ss_pred EEeCCcCcEEEEEe--c------CCEEEEEeCCCcEEEEECCCCC
Confidence 88999999999999 3 5699999999999999998644
No 81
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.9e-37 Score=262.74 Aligned_cols=255 Identities=10% Similarity=0.032 Sum_probs=195.7
Q ss_pred eeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCC
Q 038537 24 FIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAE 101 (358)
Q Consensus 24 ~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 101 (358)
.+..+.++|.++++ ++++|++|+.||.|++||+.++... ....+.+|...|.+++|+|++
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~------------------~~~~~~~h~~~v~~~~~s~~~ 67 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWK------------------HARTFSDHDKIVTCVDWAPKS 67 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEE------------------ECCCBCCCSSCEEEEEECTTT
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceE------------------EEEEEecCCceEEEEEEeCCC
Confidence 44556778888877 5789999999999999999865210 012446899999999999999
Q ss_pred CEEEEEecCCeEEEEEccCCc-ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecc-cC
Q 038537 102 GLLYTGSFDKTVKAWRVLDKR-CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKF-QQ 179 (358)
Q Consensus 102 ~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-~~ 179 (358)
++|++++.|+.|++||+.+++ ......+..|...|.+++|+|++++|++++.|+.|++||++.+.... ....+.. |.
T Consensus 68 ~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~h~ 146 (377)
T 3dwl_C 68 NRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWW-VSKHLKRPLR 146 (377)
T ss_dssp CCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CC-CCEEECSSCC
T ss_pred CEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccce-eeeEeecccC
Confidence 999999999999999998876 44566677899999999999999999999999999999997664321 2233444 89
Q ss_pred CceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCC--------------ccccceeecccceeEE--EeeeCCEEEEe
Q 038537 180 SSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGG--------------FNHGGFLQGHCFAVLC--LVAIEKLIFSG 243 (358)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--------------~~~~~~~~~~~~~~~~--~~~~~~~l~~~ 243 (358)
..|.+++|+| ++.+|++++.|+.|++||++..... ......+ +|...+.+ ++|++++|+++
T Consensus 147 ~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~ 223 (377)
T 3dwl_C 147 STILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYA 223 (377)
T ss_dssp SCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEE
T ss_pred CCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEE
Confidence 9999999998 8999999999999999998642210 1112222 66666654 56688999999
Q ss_pred eCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 244 SEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 244 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
+.||.|++||+.+++.....+..+.+|..+|++++|+|+ +.+|++++.|+.+ +|+..
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 224 GHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANE------SAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEET------TEEEEEESSSSEE-EECCC
T ss_pred eCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCC------CCEEEEEcCCcEE-EEEeC
Confidence 999999999999986433447788899999999999999 8899999877666 77665
No 82
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=8.2e-36 Score=255.73 Aligned_cols=257 Identities=11% Similarity=0.085 Sum_probs=200.3
Q ss_pred EeCCCceeeeeeeecccceEEEEec--C-CEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCC
Q 038537 14 WRQPDCVERGFIKARHGEVRAILAH--D-NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRD 90 (358)
Q Consensus 14 w~~~~~~~~~~~~~h~~~v~~i~~~--~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 90 (358)
|++...+....+.+|...|.++.++ + ++|++|+.||.|++||+.+.+..... ...+|..
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------------~~~~h~~ 119 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFI------------------QGMGPGD 119 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEE------------------CCCSTTC
T ss_pred ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceee------------------ecCCcCC
Confidence 3445667778889999999999884 4 69999999999999999876544321 1147999
Q ss_pred ceEEEEEeC-CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcc
Q 038537 91 CVSCMAFYH-AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSH 169 (358)
Q Consensus 91 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 169 (358)
.|.+++|+| ++.+|++++.|+.|++||+.+...........|...|.+++|+|++++|++++.|+.|++||++ +
T Consensus 120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~---- 194 (383)
T 3ei3_B 120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G---- 194 (383)
T ss_dssp BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S----
T ss_pred ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C----
Confidence 999999999 7799999999999999999875533333334456889999999999999999999999999983 2
Q ss_pred eeeeeecccCCceeEEEEeecCCCc-EEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--ee-eCCEEEEeeC
Q 038537 170 TLTMTLKFQQSSVNALALSSFFDNY-FLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VA-IEKLIFSGSE 245 (358)
Q Consensus 170 ~~~~~~~~~~~~i~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~l~~~~~ 245 (358)
.....+..|...|.+++|+| ++. +|++++.|+.|++||+++........... +|...+.++ ++ ++++|++++.
T Consensus 195 ~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~ 271 (383)
T 3ei3_B 195 HEIFKEKLHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ 271 (383)
T ss_dssp CEEEEEECSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES
T ss_pred CEEEEeccCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC
Confidence 23455667899999999998 777 99999999999999999854333333323 566666554 56 7899999999
Q ss_pred CCeEEEEEcCCCceeeeeeeeecCc-------c----------cceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 246 DTTIRVWRRAEGGCYHECLAVLDGH-------R----------GPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~~~~h-------~----------~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
|+.|++||+++++. ...+.+| . +.+..++|+|+ +++ +++.||.|++||+..
T Consensus 272 d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d------g~~--s~s~d~~i~iwd~~~ 339 (383)
T 3ei3_B 272 RNEIRVYSSYDWSK----PDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD------DQL--LLNDKRTIDIYDANS 339 (383)
T ss_dssp SSEEEEEETTBTTS----CSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC------TTT--CTTCCCCEEEEETTT
T ss_pred CCcEEEEECCCCcc----ccccccccccccccccceEEeccCCCCceEEEecCC------ccc--ccCCCCeEEEEecCC
Confidence 99999999998753 2233222 2 34455667776 545 888999999999974
No 83
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.5e-35 Score=289.71 Aligned_cols=270 Identities=21% Similarity=0.321 Sum_probs=227.9
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++|+.||+|++||+.+++.+..+.+|.+.|.++.+ ++++|++++.||.|++||+.+++.+.
T Consensus 629 ~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~--------------- 693 (1249)
T 3sfz_A 629 RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH--------------- 693 (1249)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---------------
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE---------------
Confidence 4799999999999999999999999999999999987 57799999999999999999876543
Q ss_pred ecCCCccccCCCceEEEEEeC--CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 79 FSKSNTQQQHRDCVSCMAFYH--AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
.+.+|...|.+++|+| ++.++++|+.|+.|++||+.+++ ....+.+|...|.+++|+|+++.+++++.||.
T Consensus 694 -----~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~--~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 694 -----TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE--CRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp -----EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS--EEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred -----EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc--hhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 3368999999999999 55689999999999999999988 77788899999999999999999999999999
Q ss_pred EEEEEceecCCcceeeee---------ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccc
Q 038537 157 VKIWRRVYRENSHTLTMT---------LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC 227 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~---------~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 227 (358)
|++||+.++......... .......+.+++|+| ++..+++++ ++.+.+||+.+...... ...+|.
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--dg~~l~~~~-~~~v~~~d~~~~~~~~~---~~~~~~ 840 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA--DGDKIIVAA-KNKVLLFDIHTSGLLAE---IHTGHH 840 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT--TSSEEEEEE-TTEEEEEETTTCCEEEE---EECSSS
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECC--CCCEEEEEc-CCcEEEEEecCCCceeE---EcCCCC
Confidence 999999766433322111 112234788999998 899998887 78999999987432221 123454
Q ss_pred cee--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 228 FAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 228 ~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
..+ .+++++++++++++.||.|++||+.++ ..+..+.+|...|++++|+|+ +.+|++++.||.|++|+
T Consensus 841 ~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~h~~~v~~v~~spd------g~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSR----LKVADCRGHLSWVHGVMFSPD------GSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp SCCCEEEECSSTTEEEEECSSSCEEEEETTTT----EEEEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEE
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeeecCCCccceEEEEECCC------CCEEEEEeCCCeEEEEE
Confidence 444 566788999999999999999999998 667888999999999999999 88999999999999999
Q ss_pred eee
Q 038537 306 VKV 308 (358)
Q Consensus 306 ~~~ 308 (358)
+..
T Consensus 911 ~~~ 913 (1249)
T 3sfz_A 911 TKK 913 (1249)
T ss_dssp HHH
T ss_pred ccc
Confidence 864
No 84
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-35 Score=289.08 Aligned_cols=272 Identities=20% Similarity=0.282 Sum_probs=226.0
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec----CCEEEEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH----DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
+|++|+.||.|++||+.+++.+..+.+|...|.++.+. +.++++|+.||.|++||+.+++...
T Consensus 671 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~------------- 737 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN------------- 737 (1249)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE-------------
T ss_pred EEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh-------------
Confidence 48999999999999999999999999999999999884 3489999999999999998876542
Q ss_pred eeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccc------------------------------
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCV------------------------------ 126 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------------------------ 126 (358)
.+.+|...|++++|+|+++.|++++.||.|++||+.+++....
T Consensus 738 -------~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 810 (1249)
T 3sfz_A 738 -------TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810 (1249)
T ss_dssp -------EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTS
T ss_pred -------eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCC
Confidence 3368999999999999999999999999999999876541100
Q ss_pred ----------------------cc-ccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCcee
Q 038537 127 ----------------------DS-FVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVN 183 (358)
Q Consensus 127 ----------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~ 183 (358)
.. ..+|...|.+++|+|++..+++++.||.|++||+.++ .....+..|...|.
T Consensus 811 ~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~----~~~~~~~~h~~~v~ 886 (1249)
T 3sfz_A 811 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR----LKVADCRGHLSWVH 886 (1249)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT----EEEEEECCCSSCEE
T ss_pred CEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----ceeeecCCCccceE
Confidence 00 1157788999999999999999999999999999543 44556678999999
Q ss_pred EEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccc-----------------------------------cceeecccc
Q 038537 184 ALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNH-----------------------------------GGFLQGHCF 228 (358)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----------------------------------~~~~~~~~~ 228 (358)
+++|+| ++.++++++.||.|++||+......... .........
T Consensus 887 ~v~~sp--dg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 964 (1249)
T 3sfz_A 887 GVMFSP--DGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQV 964 (1249)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCE
T ss_pred EEEECC--CCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcE
Confidence 999998 9999999999999999997642111000 000111233
Q ss_pred eeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 229 AVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 229 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
...+++++++++++|+.||.|++||+.++ +....+.+|...|++++|+|+ +.+|++++.||.|++||+..
T Consensus 965 ~~~~~sp~g~~l~~g~~~g~i~i~d~~~~----~~~~~~~~h~~~v~~l~~s~d------g~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 965 SCCCLSPHLEYVAFGDEDGAIKIIELPNN----RVFSSGVGHKKAVRHIQFTAD------GKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCCEEEETTTT----SCEEECCCCSSCCCCEEECSS------SSCEEEECSSSBEEEEETTT
T ss_pred EEEEEcCCCCEEEEEcCCCCEEEEEcCCC----ceeeecccCCCceEEEEECCC------CCEEEEEcCCCEEEEEECCC
Confidence 44677889999999999999999999988 567788899999999999999 88999999999999999874
No 85
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-36 Score=260.17 Aligned_cols=258 Identities=12% Similarity=0.172 Sum_probs=197.3
Q ss_pred EEeCCCceeeeee-eecccceEEEEe---cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccC
Q 038537 13 VWRQPDCVERGFI-KARHGEVRAILA---HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQH 88 (358)
Q Consensus 13 vw~~~~~~~~~~~-~~h~~~v~~i~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 88 (358)
.|+ .+++.+..+ .+|.+.|.++++ ++++|++|+.||+|++||+.+......... ....+|
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~---------------~~~~~h 110 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS---------------SLTYDC 110 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC---------------SEEEEC
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce---------------eeeccC
Confidence 477 456777788 889999999977 457999999999999999876221110000 011268
Q ss_pred CCceEEEEEeCCCCEEEEEecCCeEEEEEcc---CCcccccccc----------cc--cccCeEEEE--EcCCCCEEEEE
Q 038537 89 RDCVSCMAFYHAEGLLYTGSFDKTVKAWRVL---DKRCTCVDSF----------VA--HESNVNAIV--VNQDDGFVFTC 151 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~----------~~--~~~~v~~~~--~~~~~~~l~~~ 151 (358)
...|++++|+|++++|++|+.||.|++||+. +++ ....+ .. +...+.++. +++++.+++++
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 188 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQES--EVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL 188 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETT--EEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCc--eeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE
Confidence 9999999999999999999999999999995 333 12111 12 556677777 56789999999
Q ss_pred eCCCcEEEEEceecCCcceeeeeecc--cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceee-cccc
Q 038537 152 SSDGSVKIWRRVYRENSHTLTMTLKF--QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ-GHCF 228 (358)
Q Consensus 152 ~~dg~i~~wd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~ 228 (358)
+.||.|++||+++++. ...+.. |...|.+++|+| ++.+|++|+.||.|++||++... ....+. .|..
T Consensus 189 ~~d~~i~iwd~~~~~~----~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~ 258 (437)
T 3gre_A 189 TNLSRVIIFDIRTLER----LQIIENSPRHGAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNV----LIRSWSFGDHA 258 (437)
T ss_dssp ETTSEEEEEETTTCCE----EEEEECCGGGCCEEEEEECT--TSCEEEEEETTSCEEEEETTTTE----EEEEEBCTTCE
T ss_pred eCCCeEEEEeCCCCee----eEEEccCCCCCceEEEEECC--CCCEEEEEcCCCeEEEEEcCCcc----EEEEEecCCCC
Confidence 9999999999965543 334444 788999999998 89999999999999999998732 222232 5666
Q ss_pred eeEEEe------eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeec------------------------C--cccceEE
Q 038537 229 AVLCLV------AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLD------------------------G--HRGPVRC 276 (358)
Q Consensus 229 ~~~~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------------~--h~~~v~~ 276 (358)
.+.++. +++.+|++|+.||.|++||+.+++. +..+. + |...|++
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC----QYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE----EEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE----EEEEEcCCCCCccceecccccccccceecccccCCceEE
Confidence 776662 3567999999999999999998843 33332 2 6677889
Q ss_pred EEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 277 LAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 277 i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
++|+ + +.+|++|+.||.|++||+.+.
T Consensus 335 l~~~-~------~~~l~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 335 ISVS-N------DKILLTDEATSSIVMFSLNEL 360 (437)
T ss_dssp EEEE-T------TEEEEEEGGGTEEEEEETTCG
T ss_pred EEEC-C------ceEEEecCCCCeEEEEECCCc
Confidence 9999 5 689999999999999999854
No 86
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.5e-34 Score=262.98 Aligned_cols=271 Identities=16% Similarity=0.162 Sum_probs=206.1
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeeccc---ceEEEEe--c-CCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHG---EVRAILA--H-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~---~v~~i~~--~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
+|++++.||.|++||+.+++.+..+.+|.. .|.++.+ + +++|++++.||.|++||+.+++.+.....
T Consensus 175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------- 247 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED------- 247 (615)
T ss_dssp EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB-------
T ss_pred EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecc-------
Confidence 378999999999999999999999999999 9999987 4 67999999999999999988765532210
Q ss_pred eeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccccc----ccCeEEEEEcCCCCEEEE
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAH----ESNVNAIVVNQDDGFVFT 150 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~ 150 (358)
...+|...|.+++|+ ++.+|++++.|+.|++||+.+++ .+..+..+ ...+.++.|. ++.++++
T Consensus 248 ---------~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 314 (615)
T 1pgu_A 248 ---------DQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK--CVQKWTLDKQQLGNQQVGVVAT-GNGRIIS 314 (615)
T ss_dssp ---------TTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE--EEEEEECCTTCGGGCEEEEEEE-ETTEEEE
T ss_pred ---------cccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc--EEEEEcCCCCcccCceeEEEeC-CCCeEEE
Confidence 001789999999999 99999999999999999999887 55555544 4678888886 8999999
Q ss_pred EeCCCcEEEEEceecCCcceeeeeecc---------------------------------cCCceeEEEEeecCCCcEEE
Q 038537 151 CSSDGSVKIWRRVYRENSHTLTMTLKF---------------------------------QQSSVNALALSSFFDNYFLY 197 (358)
Q Consensus 151 ~~~dg~i~~wd~~~~~~~~~~~~~~~~---------------------------------~~~~i~~~~~~~~~~~~~l~ 197 (358)
++.||.|++||+.+++. ...+.. |...|.++++ + ++..++
T Consensus 315 ~~~~g~i~~~d~~~~~~----~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~--~~~~l~ 387 (615)
T 1pgu_A 315 LSLDGTLNFYELGHDEV----LKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-S--KAQEYS 387 (615)
T ss_dssp EETTSCEEEEETTEEEE----EEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-C--STTCCE
T ss_pred EECCCCEEEEECCCCcE----EEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-C--CCcEEE
Confidence 99999999999865332 222223 3334444444 2 244455
Q ss_pred EeecCCcEEEEEccCCcC------------------------------------------------------------C-
Q 038537 198 SGSSDGSINFWEKDKMSG------------------------------------------------------------G- 216 (358)
Q Consensus 198 ~~~~dg~i~i~d~~~~~~------------------------------------------------------------~- 216 (358)
+++.|+.|++||+..... .
T Consensus 388 ~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 467 (615)
T 1pgu_A 388 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 467 (615)
T ss_dssp EEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred EEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCC
Confidence 555555555554432100 0
Q ss_pred ---------cccc-ceeecccceeEE--EeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecC-cccceEEEEeec--
Q 038537 217 ---------FNHG-GFLQGHCFAVLC--LVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDG-HRGPVRCLAASL-- 281 (358)
Q Consensus 217 ---------~~~~-~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~v~~i~~~~-- 281 (358)
.... ..+.+|...+.+ ++|++++|++++.||.|++||+.++ +++..+.+ |...|++++|+|
T Consensus 468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~----~~~~~~~~~h~~~v~~~~~sp~~ 543 (615)
T 1pgu_A 468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR----EVKTSRWAFRTSKINAISWKPAE 543 (615)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT----EEEECCSCCCSSCEEEEEECCCC
T ss_pred eEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC----cceeEeecCCCCceeEEEEcCcc
Confidence 0000 223455555644 4568999999999999999999998 56777777 999999999999
Q ss_pred --------ccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 282 --------EMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 282 --------~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+ +.+|++++.||.|++||++.
T Consensus 544 ~~~~~~~~~------~~~l~~~~~dg~i~iw~~~~ 572 (615)
T 1pgu_A 544 KGANEEEIE------EDLVATGSLDTNIFIYSVKR 572 (615)
T ss_dssp ------CCS------CCEEEEEETTSCEEEEESSC
T ss_pred ccccccccC------CCEEEEEcCCCcEEEEECCC
Confidence 8 88999999999999999975
No 87
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=250.73 Aligned_cols=270 Identities=14% Similarity=0.153 Sum_probs=211.8
Q ss_pred CEEeeeCCCcEEEEeCCC-ceee-eeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 1 MVFTGSSSTRIRVWRQPD-CVER-GFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~-~~~~-~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
+|++|+.||.|++||+.+ +..+ ..+.+|...|.++.+ ++++|++++.||.|++||+.+++...
T Consensus 56 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~------------- 122 (368)
T 3mmy_A 56 FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ------------- 122 (368)
T ss_dssp EEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-------------
T ss_pred EEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-------------
Confidence 489999999999999986 4444 788899999999988 57799999999999999998776442
Q ss_pred eeecCCCccccCCCceEEEEE--eCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC
Q 038537 77 LSFSKSNTQQQHRDCVSCMAF--YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 154 (358)
+.+|...|++++| +|++.+|++++.||.|++||+++++ .+..+..+ ..+.++.+. ...+++++.+
T Consensus 123 --------~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~-~~~~~~~~~--~~~~~~~~~~ 189 (368)
T 3mmy_A 123 --------IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSN--PMMVLQLP-ERCYCADVI--YPMAVVATAE 189 (368)
T ss_dssp --------EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSS--CSEEEECS-SCEEEEEEE--TTEEEEEEGG
T ss_pred --------eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCc--EEEEEecC-CCceEEEec--CCeeEEEeCC
Confidence 2579999999999 8899999999999999999999887 56666554 466777666 4588899999
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCC--CcEEEEeecCCcEEEEEccCCcCCccccceeecccc----
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFD--NYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCF---- 228 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~---- 228 (358)
+.+.+|+++........ ....+...+.++.+.+... ...+++++.||.|++||++..... .....+.+|..
T Consensus 190 ~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 190 RGLIVYQLENQPSEFRR--IESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTN 266 (368)
T ss_dssp GCEEEEECSSSCEEEEE--CCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC---
T ss_pred CcEEEEEeccccchhhh--ccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc-ccceeeeeeeccccc
Confidence 99999999755432222 2223345566666665222 233999999999999999874210 22223444432
Q ss_pred --------ee--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 229 --------AV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 229 --------~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
.+ .+++|++++|++|+.||.|++||+.++ +++..+.+|..+|++++|+|+ +.+|++++.|
T Consensus 267 ~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~s~~------g~~l~~~s~d 336 (368)
T 3mmy_A 267 TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR----TKLKTSEQLDQPISACCFNHN------GNIFAYASSY 336 (368)
T ss_dssp -CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT----EEEEECCCCSSCEEEEEECTT------SSCEEEEECC
T ss_pred ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC----cEEEEecCCCCCceEEEECCC------CCeEEEEecc
Confidence 34 456678899999999999999999998 667888899999999999999 8899999999
Q ss_pred CcEEEEEeeeC
Q 038537 299 QTFKVWRVKVM 309 (358)
Q Consensus 299 g~v~iw~~~~~ 309 (358)
+..+.|++...
T Consensus 337 ~~~~~~~~~~~ 347 (368)
T 3mmy_A 337 DWSKGHEFYNP 347 (368)
T ss_dssp CSTTCGGGCCT
T ss_pred cccccccccCC
Confidence 98777776544
No 88
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.4e-35 Score=247.93 Aligned_cols=280 Identities=13% Similarity=0.144 Sum_probs=213.5
Q ss_pred eeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC
Q 038537 23 GFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA 100 (358)
Q Consensus 23 ~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 100 (358)
....+|.+.|.++++ ++++|++++.||.|++|++......... ..+.+|...|++++|+|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~-----------------~~~~~~~~~v~~~~~~~~ 67 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-----------------LQSLRYKHPLLCCNFIDN 67 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEE-----------------EEEEECSSCEEEEEEEES
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccc-----------------eeeeecCCceEEEEECCC
Confidence 344689999999977 5789999999999999999876521111 122578999999999999
Q ss_pred CC-EEEEEecCCeEEEEEc-cCCcccccccccc--cccCeEEEEEcCCCCEEEEEeCCCcEEEEEcee---------cCC
Q 038537 101 EG-LLYTGSFDKTVKAWRV-LDKRCTCVDSFVA--HESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVY---------REN 167 (358)
Q Consensus 101 ~~-~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~---------~~~ 167 (358)
++ +|++|+.||.|++||+ .+++ ...+.. |...|.+++|+| ++.+++++.|+.|++||+++ .+.
T Consensus 68 ~~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 143 (342)
T 1yfq_A 68 TDLQIYVGTVQGEILKVDLIGSPS---FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN 143 (342)
T ss_dssp SSEEEEEEETTSCEEEECSSSSSS---EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC
T ss_pred CCcEEEEEcCCCeEEEEEeccCCc---eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe
Confidence 99 9999999999999999 8776 356677 999999999999 99999999999999999976 332
Q ss_pred cceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC-CcCCccccceeeccccee--EEEee-eCCEEEEe
Q 038537 168 SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK-MSGGFNHGGFLQGHCFAV--LCLVA-IEKLIFSG 243 (358)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~-~~~~l~~~ 243 (358)
. ..+. +...+.+++++| ++ +++++.|+.|++||++. ....... ....+...+ .++++ ++++++++
T Consensus 144 ~----~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~i~~i~~~~~~~~~l~~~ 212 (342)
T 1yfq_A 144 S----NNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTI--EESGLKYQIRDVALLPKEQEGYACS 212 (342)
T ss_dssp S----SSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEE--EECSCSSCEEEEEECSGGGCEEEEE
T ss_pred e----eEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCcccccccee--eecCCCCceeEEEECCCCCCEEEEE
Confidence 2 2223 778999999986 54 99999999999999987 4332211 233344444 45567 88999999
Q ss_pred eCCCeEEEEEcCCC--ceeeeeeeeecCccc---------ceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCC
Q 038537 244 SEDTTIRVWRRAEG--GCYHECLAVLDGHRG---------PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQ 312 (358)
Q Consensus 244 ~~dg~i~iwd~~~~--~~~~~~~~~~~~h~~---------~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 312 (358)
+.||.|++|++... ....+....+..|.. .|++++|+|+ +.+|++++.||.|++||++.
T Consensus 213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~------~~~l~~~~~dg~i~vwd~~~---- 282 (342)
T 1yfq_A 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPR------HKFLYTAGSDGIISCWNLQT---- 282 (342)
T ss_dssp ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTT------TCCEEEEETTSCEEEEETTT----
T ss_pred ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCC------CCEEEEecCCceEEEEcCcc----
Confidence 99999999999876 111134556666654 9999999999 88999999999999999973
Q ss_pred cceeecccccCC-CCccceeeecccCCCcccccccchh
Q 038537 313 EKTMCLDYSDYH-SNSKTTTTKMDYEMSPVLSPSWVEK 349 (358)
Q Consensus 313 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~s~~W~~~ 349 (358)
..++..+..| ........ .....+++.++...
T Consensus 283 --~~~~~~~~~~h~~~v~~~~---~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 283 --RKKIKNFAKFNEDSVVKIA---CSDNILCLATSDDT 315 (342)
T ss_dssp --TEEEEECCCCSSSEEEEEE---ECSSEEEEEEECTH
T ss_pred --HhHhhhhhcccCCCceEec---CCCCeEEEEecCCc
Confidence 3445556665 44433333 44555666665544
No 89
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=249.96 Aligned_cols=271 Identities=8% Similarity=0.031 Sum_probs=201.6
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
+|++|+.||.|++||+.+++.+..+. ...|.++.+++. +++++.|++|++|+......+....... ...
T Consensus 50 ~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~-----~~~--- 118 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNK-----VLR--- 118 (343)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCC-----EEE---
T ss_pred EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcc-----eeE---
Confidence 48999999999999999998887776 456777777766 9999999999999887532211110000 000
Q ss_pred CCCccccCCCceEEEEEeC--CCCEEEEEecCCeEEEEEccCCcccccccc-cccccCeEEEEEcCCCCEEEEEeCCCcE
Q 038537 81 KSNTQQQHRDCVSCMAFYH--AEGLLYTGSFDKTVKAWRVLDKRCTCVDSF-VAHESNVNAIVVNQDDGFVFTCSSDGSV 157 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i 157 (358)
....+|.+.|.+++|+| ++++|++|+.||.|++||+++++ ..... ..+...|.+++|+|++.+|++|+.||.|
T Consensus 119 --~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i 194 (343)
T 3lrv_A 119 --EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDS--QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGIL 194 (343)
T ss_dssp --EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSC--EEEEECCCSSCCCCEEEECTTSCEEEEECTTSCE
T ss_pred --EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCc--EEEEEecCCCCceEEEEECCCCCEEEEEcCCCEE
Confidence 01135678899999999 99999999999999999999887 34333 3456689999999999999999999999
Q ss_pred EEEEceecCCcceeeeeecc-cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccc----eeEE
Q 038537 158 KIWRRVYRENSHTLTMTLKF-QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCF----AVLC 232 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~----~~~~ 232 (358)
++||++++... ...+.. |...|.+++|+| ++.+|++++ |+.|++||+++......... +..|.. ...+
T Consensus 195 ~iwd~~~~~~~---~~~~~~~h~~~v~~l~fs~--~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~ 267 (343)
T 3lrv_A 195 DVYNLSSPDQA---SSRFPVDEEAKIKEVKFAD--NGYWMVVEC-DQTVVCFDLRKDVGTLAYPT-YTIPEFKTGTVTYD 267 (343)
T ss_dssp EEEESSCTTSC---CEECCCCTTSCEEEEEECT--TSSEEEEEE-SSBEEEEETTSSTTCBSSCC-CBC-----CCEEEE
T ss_pred EEEECCCCCCC---ccEEeccCCCCEEEEEEeC--CCCEEEEEe-CCeEEEEEcCCCCcceeecc-cccccccccceEEE
Confidence 99999876543 123444 889999999998 999999999 55999999998544322211 111212 3478
Q ss_pred EeeeCCEEEEeeC-CCeEEEEEcCCCceeeeeeeeecCcccceEEEEeec---ccceeeeCeEEEEccCCCcEEEEEee
Q 038537 233 LVAIEKLIFSGSE-DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASL---EMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 233 ~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~---~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
++|++++|++++. |+.|++|++......++. .++..++|.+ + ...+++++.||.++++-..
T Consensus 268 ~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~------~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 268 IDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK--------DEESALCLQSDTAD------FTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCSEEE--------EEEEECCC----CC------CCEEEEEEETTEEEEEEEC
T ss_pred ECCCCCEEEEecCCCCcEEEEEEcccccceEe--------cCceeEecCccccc------cceeEEEecCCceEEEEec
Confidence 8889999999988 999999999766422221 5677888887 5 6788888899998887543
No 90
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-34 Score=239.45 Aligned_cols=244 Identities=22% Similarity=0.350 Sum_probs=201.3
Q ss_pred CceeeeeeeecccceEEEEe-cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEE
Q 038537 18 DCVERGFIKARHGEVRAILA-HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMA 96 (358)
Q Consensus 18 ~~~~~~~~~~h~~~v~~i~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 96 (358)
..+....+.+|.+.|.++.+ ++++|++|+.||.|++||+.+..... .+..|...|.+++
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~--------------------~~~~~~~~v~~~~ 66 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGT--------------------VVYTGQGFLNSVC 66 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEE--------------------EEEECSSCEEEEE
T ss_pred cHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEE--------------------EeecCCccEEEEE
Confidence 34677889999999999986 67899999999999999997665432 2357899999999
Q ss_pred EeCCCCEEEEEecCCeEEEEEccCCc-ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeee
Q 038537 97 FYHAEGLLYTGSFDKTVKAWRVLDKR-CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTL 175 (358)
Q Consensus 97 ~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 175 (358)
|+|++++|++|+.||.|++|++.... ......+..|...|.+++| +++++++++.||.|++||. ......+
T Consensus 67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~------~~~~~~~ 138 (313)
T 3odt_A 67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE------GSLVYNL 138 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET------TEEEEEE
T ss_pred ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC------CcEEEec
Confidence 99999999999999999999987643 1246677889999999999 5789999999999999992 2334556
Q ss_pred cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec-ccceeEE--EeeeCCEEEEeeCCCeEEEE
Q 038537 176 KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG-HCFAVLC--LVAIEKLIFSGSEDTTIRVW 252 (358)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~l~~~~~dg~i~iw 252 (358)
..|...+.++.+.| .+++++++++.||.|++||... ....+.. |...+.+ +++++. +++++.||.|++|
T Consensus 139 ~~~~~~v~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~ 210 (313)
T 3odt_A 139 QAHNASVWDAKVVS-FSENKFLTASADKTIKLWQNDK------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLV 210 (313)
T ss_dssp ECCSSCEEEEEEEE-TTTTEEEEEETTSCEEEEETTE------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEE
T ss_pred ccCCCceeEEEEcc-CCCCEEEEEECCCCEEEEecCc------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEE
Confidence 67899999999987 4788999999999999999543 1122233 5555544 455666 9999999999999
Q ss_pred EcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 253 RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 253 d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
|++++ +++..+.+|...|++++|+|+ + .|++++.||.|++||+++
T Consensus 211 d~~~~----~~~~~~~~~~~~i~~~~~~~~------~-~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 211 DMHTG----DVLRTYEGHESFVYCIKLLPN------G-DIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp ETTTC----CEEEEEECCSSCEEEEEECTT------S-CEEEEETTSEEEEECTTT
T ss_pred ECCch----hhhhhhhcCCceEEEEEEecC------C-CEEEEecCCEEEEEECCC
Confidence 99988 567788899999999999998 7 688999999999999874
No 91
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.7e-35 Score=272.51 Aligned_cols=250 Identities=22% Similarity=0.328 Sum_probs=213.1
Q ss_pred eeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEE
Q 038537 20 VERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAF 97 (358)
Q Consensus 20 ~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 97 (358)
+..+.+.+|.+.|.++++ ++.+|++++.||.|++||+.+++... .+.+|..+|++++|
T Consensus 4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~--------------------~~~~~~~~v~~~~~ 63 (814)
T 3mkq_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR--------------------SIQVTETPVRAGKF 63 (814)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------------EEECCSSCEEEEEE
T ss_pred ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE--------------------EEecCCCcEEEEEE
Confidence 355778999999999987 57799999999999999998776543 33579999999999
Q ss_pred eCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecc
Q 038537 98 YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKF 177 (358)
Q Consensus 98 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 177 (358)
+|++++|++|+.||.|++||+.+++ .+..+..|...|.+++|+|++++|++++.||.|++||+.++. .....+..
T Consensus 64 s~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~---~~~~~~~~ 138 (814)
T 3mkq_A 64 IARKNWIIVGSDDFRIRVFNYNTGE--KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW---ALEQTFEG 138 (814)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS---EEEEEEEC
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCc--EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc---eEEEEEcC
Confidence 9999999999999999999999888 777888899999999999999999999999999999996542 34456667
Q ss_pred cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec--ccceeEEEee--eCCEEEEeeCCCeEEEEE
Q 038537 178 QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG--HCFAVLCLVA--IEKLIFSGSEDTTIRVWR 253 (358)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~l~~~~~dg~i~iwd 253 (358)
|...|.+++|+| .++..|++++.||.|++||+......... ... ......+++| ++.+|++++.||.|++||
T Consensus 139 ~~~~v~~~~~~p-~~~~~l~~~~~dg~v~vwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d 214 (814)
T 3mkq_A 139 HEHFVMCVAFNP-KDPSTFASGCLDRTVKVWSLGQSTPNFTL---TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214 (814)
T ss_dssp CSSCEEEEEEET-TEEEEEEEEETTSEEEEEETTCSSCSEEE---ECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEE
T ss_pred CCCcEEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcceeEE---ecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 899999999997 25679999999999999999874432222 122 2334466666 889999999999999999
Q ss_pred cCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 254 RAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 254 ~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+.++ +.+..+.+|...|++++|+|+ +.+|++++.||.|++||+..
T Consensus 215 ~~~~----~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 215 YQTK----SCVATLEGHMSNVSFAVFHPT------LPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp TTTT----EEEEEEECCSSCEEEEEECSS------SSEEEEEETTSCEEEEETTT
T ss_pred CCCC----cEEEEEcCCCCCEEEEEEcCC------CCEEEEEeCCCeEEEEECCC
Confidence 9988 567788899999999999999 88999999999999999874
No 92
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=272.21 Aligned_cols=289 Identities=11% Similarity=0.079 Sum_probs=200.0
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++++.|++|++||+.+++.+..+. |.+.|.++.+ ++++|++|+.||.|++||+.+.+... .....
T Consensus 71 ~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~-~~i~~--------- 139 (902)
T 2oaj_A 71 YLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS-FKLDN--------- 139 (902)
T ss_dssp EEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE-EEECC---------
T ss_pred EEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc-ceecc---------
Confidence 48999999999999999998888875 7788999987 57899999999999999998765421 11000
Q ss_pred ecCC-CccccCCCceEEEEEeCC-CCEEEEEecCCeEEEEEccCCccccccccccc------------------ccCeEE
Q 038537 79 FSKS-NTQQQHRDCVSCMAFYHA-EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAH------------------ESNVNA 138 (358)
Q Consensus 79 ~~~~-~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------------------~~~v~~ 138 (358)
.... ..+.+|.++|++++|+|+ +..|++|+.||.| +||+++++ .+..+..| ...|.+
T Consensus 140 ~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~ 216 (902)
T 2oaj_A 140 LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE--IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ 216 (902)
T ss_dssp HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE--EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEE
T ss_pred ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc--eEEEEecccCCcCCCcccccccccccCCCeEE
Confidence 0000 123689999999999996 4789999999999 99999877 44444433 578999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEceecCCcceeee-eec-------------ccCCceeEEEEeecC--CC-cEEEEeec
Q 038537 139 IVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTM-TLK-------------FQQSSVNALALSSFF--DN-YFLYSGSS 201 (358)
Q Consensus 139 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~-------------~~~~~i~~~~~~~~~--~~-~~l~~~~~ 201 (358)
++|+|++.+|++++.||.|++||+++++....... ... .+...|.+++|++.. ++ .++++|+.
T Consensus 217 v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~ 296 (902)
T 2oaj_A 217 SLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKS 296 (902)
T ss_dssp EEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEEC
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCC
Confidence 99999999999999999999999976543211000 000 123457777775421 21 34444433
Q ss_pred ----------------------------------------------------------------------------CCcE
Q 038537 202 ----------------------------------------------------------------------------DGSI 205 (358)
Q Consensus 202 ----------------------------------------------------------------------------dg~i 205 (358)
||.|
T Consensus 297 ~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l 376 (902)
T 2oaj_A 297 ISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI 376 (902)
T ss_dssp STTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred CCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence 3444
Q ss_pred EEEEccCCcCCcc---ccc----------------------------------eeeccccee--EEEeeeCCEEEEeeCC
Q 038537 206 NFWEKDKMSGGFN---HGG----------------------------------FLQGHCFAV--LCLVAIEKLIFSGSED 246 (358)
Q Consensus 206 ~i~d~~~~~~~~~---~~~----------------------------------~~~~~~~~~--~~~~~~~~~l~~~~~d 246 (358)
++||+.++..... ... .+.+|...+ ++++|++++|++|+.|
T Consensus 377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~D 456 (902)
T 2oaj_A 377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSN 456 (902)
T ss_dssp EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETT
T ss_pred EEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCC
Confidence 4444322110000 000 011111111 2345788999999999
Q ss_pred CeEEEEEcCCCceeeeeeee--ec-----CcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 247 TTIRVWRRAEGGCYHECLAV--LD-----GHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~--~~-----~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
++|++||+.++......... +. +|...|++++|+|+ +++||+|+.||+|+|||+...
T Consensus 457 gtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspd------g~~LAsgs~DgtV~lwd~~~~ 520 (902)
T 2oaj_A 457 GSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAE------TLELAVSIETGDVVLFKYEVN 520 (902)
T ss_dssp SEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETT------TTEEEEEETTSCEEEEEEEEC
T ss_pred CcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCC------CCeEEEEecCcEEEEEEecCc
Confidence 99999999887421101111 12 79999999999999 889999999999999999865
No 93
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.7e-34 Score=260.35 Aligned_cols=269 Identities=15% Similarity=0.160 Sum_probs=218.1
Q ss_pred EEeeeCCCcEEEEeCCCc----eeeeeeeecccc-eEEEEe----cCCEEEEEeCCceEEEEecccccccccccccccCC
Q 038537 2 VFTGSSSTRIRVWRQPDC----VERGFIKARHGE-VRAILA----HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPR 72 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~----~~~~~~~~h~~~-v~~i~~----~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 72 (358)
|++++ ++.|++||+.++ +....+.+|... |.++.+ ++++|++|+.||.|++||+.++.......
T Consensus 33 l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~------ 105 (615)
T 1pgu_A 33 IAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE------ 105 (615)
T ss_dssp EEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE------
T ss_pred EEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccccccc------
Confidence 56666 889999999998 889999999999 999876 45799999999999999997552110000
Q ss_pred CceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecC----CeEEEEEccCCcccccccccccccCeEEEEEcCCCC-E
Q 038537 73 RSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD----KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDG-F 147 (358)
Q Consensus 73 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 147 (358)
......+..|...|.+++|+|++++|++++.+ +.|++|| .++ .+..+..|...|.+++|+|+++ .
T Consensus 106 ------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~--~~~~~~~~~~~v~~~~~~~~~~~~ 175 (615)
T 1pgu_A 106 ------VNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGN--SLGEVSGHSQRINACHLKQSRPMR 175 (615)
T ss_dssp ------EEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCC--EEEECCSCSSCEEEEEECSSSSCE
T ss_pred ------ccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCC--cceeeecCCccEEEEEECCCCCcE
Confidence 00011346789999999999999999999988 7899998 344 5677789999999999999998 8
Q ss_pred EEEEeCCCcEEEEEceecCCcceeeeeecccCC---ceeEEEEeecCC-CcEEEEeecCCcEEEEEccCCcCCcccccee
Q 038537 148 VFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQS---SVNALALSSFFD-NYFLYSGSSDGSINFWEKDKMSGGFNHGGFL 223 (358)
Q Consensus 148 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 223 (358)
+++++.|+.|++||+.+. .....+..|.. .|.+++|+| + +++|++++.||.|++||+++... ...+
T Consensus 176 l~~~~~d~~v~vwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~ 245 (615)
T 1pgu_A 176 SMTVGDDGSVVFYQGPPF----KFSASDRTHHKQGSFVRDVEFSP--DSGEFVITVGSDRKISCFDGKSGEF----LKYI 245 (615)
T ss_dssp EEEEETTTEEEEEETTTB----EEEEEECSSSCTTCCEEEEEECS--TTCCEEEEEETTCCEEEEETTTCCE----EEEC
T ss_pred EEEEeCCCcEEEEeCCCc----ceeeeecccCCCCceEEEEEECC--CCCCEEEEEeCCCeEEEEECCCCCE----eEEe
Confidence 999999999999998543 44556667888 999999998 8 99999999999999999987432 2223
Q ss_pred -e---cccceeEEEee-eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCc----ccceEEEEeecccceeeeCeEEEE
Q 038537 224 -Q---GHCFAVLCLVA-IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGH----RGPVRCLAASLEMEKVVMGFLVYS 294 (358)
Q Consensus 224 -~---~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h----~~~v~~i~~~~~~~~~~~~~~l~s 294 (358)
. .|...+.++.+ ++++|++++.||.|++||+.++ +.+..+..+ ...+.++.|. + +.++++
T Consensus 246 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~------~~~l~~ 314 (615)
T 1pgu_A 246 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS----KCVQKWTLDKQQLGNQQVGVVAT-G------NGRIIS 314 (615)
T ss_dssp CBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT----EEEEEEECCTTCGGGCEEEEEEE-E------TTEEEE
T ss_pred cccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCC----cEEEEEcCCCCcccCceeEEEeC-C------CCeEEE
Confidence 3 67777766655 8899999999999999999988 445555555 5778888886 5 689999
Q ss_pred ccCCCcEEEEEeee
Q 038537 295 SSLDQTFKVWRVKV 308 (358)
Q Consensus 295 ~~~dg~v~iw~~~~ 308 (358)
++.||.|++||+..
T Consensus 315 ~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 315 LSLDGTLNFYELGH 328 (615)
T ss_dssp EETTSCEEEEETTE
T ss_pred EECCCCEEEEECCC
Confidence 99999999999874
No 94
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.9e-36 Score=265.01 Aligned_cols=232 Identities=12% Similarity=0.054 Sum_probs=178.7
Q ss_pred EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC------CCEEEEEecCCeEE
Q 038537 41 MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA------EGLLYTGSFDKTVK 114 (358)
Q Consensus 41 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~~~~~dg~i~ 114 (358)
.+++++.|++|+||++.+++..... ...+.+|.+.|.+++|+|+ +.+|++++.||+|+
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~----------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgtvr 238 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVK----------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTIN 238 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEE----------------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEE
T ss_pred hhccCCCCceEEEEEccCCCCCceE----------------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEE
Confidence 4566778999999999876532110 0123567889999999996 57999999999999
Q ss_pred EEEccCCccc---------ccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEE
Q 038537 115 AWRVLDKRCT---------CVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNAL 185 (358)
Q Consensus 115 iwd~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~ 185 (358)
+||+.++... +...+.+|...|++++|+++ ..|++|+.||+|++||++++.. ....+..|...|.++
T Consensus 239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~---~~~~~~~H~~~V~sv 314 (524)
T 2j04_B 239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEV---PSFYDQVHDSYILSV 314 (524)
T ss_dssp EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSS---CSEEEECSSSCEEEE
T ss_pred EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCC---ceEEeecccccEEEE
Confidence 9999766411 12356789999999999986 4899999999999999976532 223456799999999
Q ss_pred E--EeecCCC-cEEEEeecCCcEEEEEccCCcCCccccceeeccc----ceeEEEeeeCCEEEEeeCCCeEEEEEcCCCc
Q 038537 186 A--LSSFFDN-YFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC----FAVLCLVAIEKLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 186 ~--~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 258 (358)
+ ++| ++ .+|++|+.|++|++||+++... ...+.+|. ...++++|+++.+++++.|+.|++||++++
T Consensus 315 ~~~~s~--~g~~~laS~S~D~tvklWD~~~~~~----~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~- 387 (524)
T 2j04_B 315 STAYSD--FEDTVVSTVAVDGYFYIFNPKDIAT----TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA- 387 (524)
T ss_dssp EEECCT--TSCCEEEEEETTSEEEEECGGGHHH----HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT-
T ss_pred EEEcCC--CCCeEEEEeccCCeEEEEECCCCCc----ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc-
Confidence 4 454 66 8999999999999999987432 22233332 234778888999999999999999999987
Q ss_pred eeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 259 CYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 259 ~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.++..+.+|.+.|++|+|+|+ +.+|++|+.||+|++||+..
T Consensus 388 ---~~~~~l~gH~~~V~sva~Sp~------g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 388 ---FAVHPLVSRETTITAIGVSRL------HPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp ---TCCEEEEECSSCEEEEECCSS------CCBCEEEETTTEEECCBSCS
T ss_pred ---ccceeeecCCCceEEEEeCCC------CCeEEEEECCCEEEEEechH
Confidence 445667789999999999999 88999999999999999754
No 95
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=273.68 Aligned_cols=262 Identities=17% Similarity=0.224 Sum_probs=211.0
Q ss_pred eeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC
Q 038537 22 RGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99 (358)
Q Consensus 22 ~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 99 (358)
+..+.+|.+.|.++.+ ++++|++|+.||.|++||+........ ..+.+|.++|++++|+|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~------------------~~l~~h~~~V~~l~~s~ 63 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI------------------DTLTGHEGPVWRVDWAH 63 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE------------------EEECCCSSCEEEEEECC
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc------------------eeccCCcCceEEEEecC
Confidence 3567899999999987 578999999999999999874321110 13468999999999998
Q ss_pred C--CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC--CCEEEEEeCCCcEEEEEceecCCcceeeeee
Q 038537 100 A--EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD--DGFVFTCSSDGSVKIWRRVYRENSHTLTMTL 175 (358)
Q Consensus 100 ~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 175 (358)
+ +++|++|+.||.|++||+.+++......+..|...|.+++|+|+ ++.+++|+.||.|++||++.+.... ....
T Consensus 64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~--~~~~ 141 (753)
T 3jro_A 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS--PIII 141 (753)
T ss_dssp TTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCC--CEEE
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcc--eeEe
Confidence 8 89999999999999999998875567778889999999999999 9999999999999999997664332 2345
Q ss_pred cccCCceeEEEEeecC-----------CCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eee---CCE
Q 038537 176 KFQQSSVNALALSSFF-----------DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAI---EKL 239 (358)
Q Consensus 176 ~~~~~~i~~~~~~~~~-----------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~ 239 (358)
..|...|.+++|+|.. ++.++++|+.||.|++||++...........+.+|...+.++ +|+ +++
T Consensus 142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~ 221 (753)
T 3jro_A 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSY 221 (753)
T ss_dssp ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEE
T ss_pred ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCE
Confidence 6788999999999821 478999999999999999998654445555667788777665 556 789
Q ss_pred EEEeeCCCeEEEEEcCCCcee-eeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 240 IFSGSEDTTIRVWRRAEGGCY-HECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 240 l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
|++|+.||.|++||+.+++.. .........|...|++++|+|+ +.+|++++.||.|++|+++..
T Consensus 222 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spd------g~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 222 LASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLS------GNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTT------TCCEEEECSSSCEECCBCCSS
T ss_pred EEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCC------CCEEEEEcCCCEEEEEecCCC
Confidence 999999999999999986321 1234445568899999999999 889999999999999999853
No 96
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1e-34 Score=249.28 Aligned_cols=241 Identities=11% Similarity=0.055 Sum_probs=176.3
Q ss_pred CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC--------CCCEEEEEecC
Q 038537 39 DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH--------AEGLLYTGSFD 110 (358)
Q Consensus 39 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~l~~~~~d 110 (358)
+.+|++++.|++|++||+..+........ ..+.+|.+.|++++|+| ++++|++|+.|
T Consensus 101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~---------------~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 101 SLFLACVCQDNTVRLIITKNETIITQHVL---------------GGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp EEEEEEEETTSCEEEEEEETTEEEEEEEE---------------CTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred CCEEEEEeCCCcEEEEECCCCccceeeee---------------cccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 45899999999999999987755432221 24579999999999998 78899999999
Q ss_pred CeEEEEEccCCcccccccccccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEceecCCcceee-----------------
Q 038537 111 KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD-GFVFTCSSDGSVKIWRRVYRENSHTLT----------------- 172 (358)
Q Consensus 111 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~----------------- 172 (358)
++|+|||+.++. ++..+..|..+|.+++|+|++ .+|++++.||.|++||++++.......
T Consensus 166 ~tv~~Wd~~~~~--~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 166 CTLIIWRLTDEG--PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp SEEEEEEEETTE--EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred CeEEEEECCCCc--eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 999999998876 666777899999999999987 489999999999999998765432211
Q ss_pred ----eeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccc---------------eeeccccee-EE
Q 038537 173 ----MTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGG---------------FLQGHCFAV-LC 232 (358)
Q Consensus 173 ----~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------------~~~~~~~~~-~~ 232 (358)
.....|...+.++.|.+ +++..+++++.|+.+++||+........... ....+...+ ..
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp GC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred ceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence 11235677889999874 4899999999999999999986432211100 000000000 12
Q ss_pred Eee--eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 233 LVA--IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 233 ~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+.+ ++.++++|+.||.|++||+.++ ++...+.+|..+|++++|+|+ |++||+++.|| +.+|++..
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~----~~~~~~~~~~~~V~svafspd------G~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEK----DSNSIPIQLGMPIVDFCWHQD------GSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCT----TCCEEEEECSSCEEEEEECTT------SSEEEEEESSE-EEEEEEGG
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCC----cEEEEecCCCCcEEEEEEcCC------CCEEEEEeCCC-eEEEEEeC
Confidence 222 3456778889999999999988 445566678899999999999 89999998765 77777653
No 97
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=6.5e-35 Score=255.21 Aligned_cols=260 Identities=13% Similarity=0.202 Sum_probs=195.0
Q ss_pred ecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCC------------Cce
Q 038537 27 ARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHR------------DCV 92 (358)
Q Consensus 27 ~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v 92 (358)
.|.+.|.++.+ ++++|++|+.||.|+||++.+.+........ .+.....+.+|. ..|
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~---------~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRG---------EYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCC---------CEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccccc---------ceeEecccccccccccccccccccCce
Confidence 36789999987 5789999999999999999876531110000 011112446787 889
Q ss_pred EEEEEeCCC--CEEEEEecCCeEEEEEccCCccc-------------------------------------cccc-cccc
Q 038537 93 SCMAFYHAE--GLLYTGSFDKTVKAWRVLDKRCT-------------------------------------CVDS-FVAH 132 (358)
Q Consensus 93 ~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~-------------------------------------~~~~-~~~~ 132 (358)
++++|+|++ ..|++++.|+.|++||+.++... +... ..+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 79999999999999999764421 0011 3579
Q ss_pred ccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceee----eeecccCCceeEEEEeecCCC-cEEEEeecCCcEEE
Q 038537 133 ESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLT----MTLKFQQSSVNALALSSFFDN-YFLYSGSSDGSINF 207 (358)
Q Consensus 133 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~-~~l~~~~~dg~i~i 207 (358)
...|.+++|+|++++|++| .|+.|++||++......... ..+..|...|.+++|+| ++ .+|++|+.||.|++
T Consensus 177 ~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i~i 253 (447)
T 3dw8_B 177 TYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTIRL 253 (447)
T ss_dssp SSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCEEE
T ss_pred CcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeEEE
Confidence 9999999999999999998 89999999997432211110 13567889999999998 77 89999999999999
Q ss_pred EEccCCcCCccccceeecccc------------ee--EEEeeeCCEEEEeeCCCeEEEEEcCC-CceeeeeeeeecCccc
Q 038537 208 WEKDKMSGGFNHGGFLQGHCF------------AV--LCLVAIEKLIFSGSEDTTIRVWRRAE-GGCYHECLAVLDGHRG 272 (358)
Q Consensus 208 ~d~~~~~~~~~~~~~~~~~~~------------~~--~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~ 272 (358)
||+++..........+..|.. .+ +++++++++|++++. +.|++||++. + +++..+.+|..
T Consensus 254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~----~~~~~~~~~~~ 328 (447)
T 3dw8_B 254 CDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN----RPVETYQVHEY 328 (447)
T ss_dssp EETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS----SCSCCEESCGG
T ss_pred EECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc----cccceeecccc
Confidence 999985543222344555543 44 555678899999998 9999999987 5 56777777764
Q ss_pred c---------------eEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 273 P---------------VRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 273 ~---------------v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
. +..++|+|+ +.+|++|+.||.|++||+...
T Consensus 329 ~~~~l~~~~~~~~i~~~~~~~~s~~------~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 329 LRSKLCSLYENDCIFDKFECCWNGS------DSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp GTTTHHHHHHTSGGGCCCCEEECTT------SSEEEEECSTTEEEEEETTTC
T ss_pred ccccccccccccccccceEEEECCC------CCEEEEeccCCEEEEEEcCCC
Confidence 2 334999999 889999999999999999753
No 98
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=247.12 Aligned_cols=237 Identities=19% Similarity=0.182 Sum_probs=197.7
Q ss_pred CEEeeeCCCcEEEEeCC--CceeeeeeeecccceEEEEec----CCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 1 MVFTGSSSTRIRVWRQP--DCVERGFIKARHGEVRAILAH----DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~--~~~~~~~~~~h~~~v~~i~~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
+|++|+.||.|+|||+. +.+.+..+.+|...|.++.+. +++|++|+.||.|++||+.+++....
T Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~---------- 94 (379)
T 3jrp_A 25 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI---------- 94 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEE----------
T ss_pred EEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEe----------
Confidence 48999999999999997 667788899999999999874 78999999999999999987642111
Q ss_pred eeeeecCCCccccCCCceEEEEEeCC--CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC---------
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHA--EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ--------- 143 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--------- 143 (358)
..+..|...|.+++|+|+ +.+|++++.|+.|++||+.+........+..|...|.+++|+|
T Consensus 95 --------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 166 (379)
T 3jrp_A 95 --------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 166 (379)
T ss_dssp --------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-------
T ss_pred --------eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccc
Confidence 123578999999999999 9999999999999999998875445556678999999999999
Q ss_pred ----CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCC---CcEEEEeecCCcEEEEEccCCcCC
Q 038537 144 ----DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFD---NYFLYSGSSDGSINFWEKDKMSGG 216 (358)
Q Consensus 144 ----~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~ 216 (358)
++.++++++.||.|++||++.+.........+..|...|.+++|+| + +.+|++++.||.|++||++.....
T Consensus 167 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 244 (379)
T 3jrp_A 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP--TVLLRSYLASVSQDRTCIIWTQDNEQGP 244 (379)
T ss_dssp ---CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC--CCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC--CCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence 6999999999999999999887766667777888999999999998 7 899999999999999999874322
Q ss_pred cc-ccceeeccccee--EEEeeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 217 FN-HGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 217 ~~-~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
.. .......|...+ .++++++++|++++.||.|++|++...
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 245 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 11 111122355555 456678999999999999999999855
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=246.38 Aligned_cols=261 Identities=14% Similarity=0.169 Sum_probs=204.4
Q ss_pred cEEEEeCCCceeeeeeeecccceEEEEec-----CCEEEEEeCCceEEEEeccc-ccccccccccccCCCceeeeecCCC
Q 038537 10 RIRVWRQPDCVERGFIKARHGEVRAILAH-----DNMLFTTNKDCKIRIWNFTV-SDNFRTKKVTTLPRRSSFLSFSKSN 83 (358)
Q Consensus 10 ~v~vw~~~~~~~~~~~~~h~~~v~~i~~~-----~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
.+..|+....+.+..+.+|.+.|.++.++ +++|++|+.||.|++||+.+ +.... .
T Consensus 20 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~-------------------~ 80 (368)
T 3mmy_A 20 SATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP-------------------K 80 (368)
T ss_dssp ---CCSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------------------E
T ss_pred EeccCCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------------------E
Confidence 33445666677788889999999999885 37999999999999999986 32221 1
Q ss_pred ccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEE--cCCCCEEEEEeCCCcEEEEE
Q 038537 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVV--NQDDGFVFTCSSDGSVKIWR 161 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~~wd 161 (358)
.+.+|...|++++|+|++++|++++.||.|++||+.+++ .. .+..|...|.+++| +|++.+|++++.||.|++||
T Consensus 81 ~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~--~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 157 (368)
T 3mmy_A 81 AQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ--AI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157 (368)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE--EE-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEEC
T ss_pred EeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC--ce-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEE
Confidence 336899999999999999999999999999999999887 33 35679999999999 88999999999999999999
Q ss_pred ceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCE--
Q 038537 162 RVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKL-- 239 (358)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 239 (358)
+++++....+. . ...+.++.+. ...+++++.++.+.+|+++..............+...+.++.++...
T Consensus 158 ~~~~~~~~~~~----~-~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (368)
T 3mmy_A 158 TRSSNPMMVLQ----L-PERCYCADVI----YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKP 228 (368)
T ss_dssp SSCSSCSEEEE----C-SSCEEEEEEE----TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCE
T ss_pred CCCCcEEEEEe----c-CCCceEEEec----CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCC
Confidence 98765443332 2 2355555554 45888999999999999987544333333344555666677665544
Q ss_pred --EEEeeCCCeEEEEEcCCCceeeeeeeeecCccc------------ceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 240 --IFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRG------------PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 240 --l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~------------~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
+++++.||.|++||+..... ...+..+.+|.. +|++++|+|+ +.+|++++.||.|++||
T Consensus 229 ~~~~~~~~dg~i~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~s~~~dg~i~iwd 301 (368)
T 3mmy_A 229 TGFALGSIEGRVAIHYINPPNP-AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV------HGTLATVGSDGRFSFWD 301 (368)
T ss_dssp EEEEEEETTSEEEEEESSCSCH-HHHSEEEECSEEC----CCCEEECCEEEEEECTT------TCCEEEEETTSCEEEEE
T ss_pred CeEEEecCCCcEEEEecCCCCc-cccceeeeeeecccccccccccccceEEEEEecC------CCEEEEEccCCeEEEEE
Confidence 99999999999999988632 123556667765 7999999999 88999999999999999
Q ss_pred eee
Q 038537 306 VKV 308 (358)
Q Consensus 306 ~~~ 308 (358)
++.
T Consensus 302 ~~~ 304 (368)
T 3mmy_A 302 KDA 304 (368)
T ss_dssp TTT
T ss_pred CCC
Confidence 873
No 100
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-33 Score=239.09 Aligned_cols=250 Identities=14% Similarity=0.205 Sum_probs=205.7
Q ss_pred eeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEE
Q 038537 20 VERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAF 97 (358)
Q Consensus 20 ~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 97 (358)
.....+.+|.+.|.++++ ++++|++++.||.|++||+.+++... .+.+|...|.+++|
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--------------------~~~~h~~~v~~~~~ 82 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG--------------------TLDGHTGTIWSIDV 82 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE--------------------EECCCSSCEEEEEE
T ss_pred cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh--------------------hhhhcCCcEEEEEE
Confidence 345668899999999988 57899999999999999998776543 33679999999999
Q ss_pred eCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEceecCCcceee
Q 038537 98 YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD-----GSVKIWRRVYRENSHTLT 172 (358)
Q Consensus 98 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~ 172 (358)
+|++++|++++.||.|++||+.+++ .+..+. +...|.+++|+|+++++++++.+ |.|++||+..........
T Consensus 83 ~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~ 159 (369)
T 3zwl_B 83 DCFTKYCVTGSADYSIKLWDVSNGQ--CVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELT 159 (369)
T ss_dssp CTTSSEEEEEETTTEEEEEETTTCC--EEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCc--EEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeec
Confidence 9999999999999999999999887 555555 88899999999999999999999 999999998775433221
Q ss_pred -------eeecccCC--ceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEE--EeeeCCEEE
Q 038537 173 -------MTLKFQQS--SVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC--LVAIEKLIF 241 (358)
Q Consensus 173 -------~~~~~~~~--~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ 241 (358)
.....+.. .+.+++|+| ++.+|++++.||.|++||+++.. .....+..|...+.+ +++++++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~ 234 (369)
T 3zwl_B 160 KVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNY---EYVDSIDLHEKSISDMQFSPDLTYFI 234 (369)
T ss_dssp EECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTT---EEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCc---EeEEEEecCCCceeEEEECCCCCEEE
Confidence 22233444 899999998 89999999999999999998631 233345566666654 456889999
Q ss_pred EeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCC--------------cEEEEEee
Q 038537 242 SGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQ--------------TFKVWRVK 307 (358)
Q Consensus 242 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg--------------~v~iw~~~ 307 (358)
+++.||.|++||+.++ +.+..+. +...+..++|+|+ +.++++++.++ .+++||+.
T Consensus 235 ~~~~d~~i~v~d~~~~----~~~~~~~-~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~ 303 (369)
T 3zwl_B 235 TSSRDTNSFLVDVSTL----QVLKKYE-TDCPLNTAVITPL------KEFIILGGGQEAKDVTTTSANEGKFEARFYHKI 303 (369)
T ss_dssp EEETTSEEEEEETTTC----CEEEEEE-CSSCEEEEEECSS------SSEEEEEECCC-------------CEEEEEETT
T ss_pred EecCCceEEEEECCCC----ceeeeec-CCCCceeEEecCC------CceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence 9999999999999998 4455554 7789999999999 88999999988 78888876
Q ss_pred e
Q 038537 308 V 308 (358)
Q Consensus 308 ~ 308 (358)
.
T Consensus 304 ~ 304 (369)
T 3zwl_B 304 F 304 (369)
T ss_dssp T
T ss_pred C
Confidence 4
No 101
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-34 Score=251.41 Aligned_cols=253 Identities=15% Similarity=0.144 Sum_probs=190.0
Q ss_pred eeeeeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEE
Q 038537 20 VERGFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMA 96 (358)
Q Consensus 20 ~~~~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 96 (358)
........|...|++++|+ +++||+|+.||.|+|||+.+++..... .+.+|.+.|++|+
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~------------------~~~gH~~~V~~l~ 171 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI------------------KGIGAGGSITGLK 171 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE------------------CCCSSSCCCCEEE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE------------------EccCCCCCEEEEE
Confidence 3345567889999999985 468999999999999999876543211 2368999999999
Q ss_pred EeC-CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeee
Q 038537 97 FYH-AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTL 175 (358)
Q Consensus 97 ~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 175 (358)
|+| ++.+|++|+.||+|++||+++...........+...+.+++|+|++.+|++|+.||.|++||++.. ....+
T Consensus 172 f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-----~~~~~ 246 (435)
T 4e54_B 172 FNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-----ELWNL 246 (435)
T ss_dssp ECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-----BCCCS
T ss_pred EeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-----eeEEE
Confidence 998 688999999999999999987653333333344567889999999999999999999999998532 23456
Q ss_pred cccCCceeEEEEeecCCC-cEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eeeCCEEEEeeCCCeEEEE
Q 038537 176 KFQQSSVNALALSSFFDN-YFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAIEKLIFSGSEDTTIRVW 252 (358)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~iw 252 (358)
..|...|.+++|+| ++ .++++|+.|+.|++||++........ ....+|...|.++ +|++++|++++.||.|++|
T Consensus 247 ~~h~~~v~~v~~~p--~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iw 323 (435)
T 4e54_B 247 RMHKKKVTHVALNP--CCDWFLATASVDQTVKIWDLRQVRGKASF-LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY 323 (435)
T ss_dssp BCCSSCEEEEEECT--TCSSEEEEEETTSBCCEEETTTCCSSSCC-SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEE
T ss_pred ecccceEEeeeecC--CCceEEEEecCcceeeEEecccccccceE-EEeeeccccccceeECCCCCeeEEEcCCCEEEEE
Confidence 77999999999998 55 47889999999999999875543332 2245677777665 5678999999999999999
Q ss_pred EcCCCceeeeeeeeecCccc------ceEEEEeecccceeeeCeEEEEc------------cCCCcEEEEEeee
Q 038537 253 RRAEGGCYHECLAVLDGHRG------PVRCLAASLEMEKVVMGFLVYSS------------SLDQTFKVWRVKV 308 (358)
Q Consensus 253 d~~~~~~~~~~~~~~~~h~~------~v~~i~~~~~~~~~~~~~~l~s~------------~~dg~v~iw~~~~ 308 (358)
|+.++.. ...+..|.. .+....|+|+ +.+++++ ..++.|++||+.+
T Consensus 324 d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~ 387 (435)
T 4e54_B 324 SASQWDC----PLGLIPHPHRHFQHLTPIKAAWHPR------YNLIVVGRYPDPNFKSCTPYELRTIDVFDGNS 387 (435)
T ss_dssp ESSSSSS----EEEECCCCCCCCSSSCCCBCEECSS------SSCEEEECCCCTTSCCSSTTCCCCEEEECSSS
T ss_pred ECCCCcc----ceEEecccccccccceeEEEEEcCC------CCEEEEEEcCCCCeEEEEecCCCEEEEEECCC
Confidence 9998743 333333322 2233456665 3344333 3456899999874
No 102
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=9.6e-34 Score=246.30 Aligned_cols=264 Identities=16% Similarity=0.244 Sum_probs=205.7
Q ss_pred eeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC
Q 038537 23 GFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH 99 (358)
Q Consensus 23 ~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 99 (358)
.....|.+.|.++.+. +.+|++++.||.|++|++........... ...+...+.+|...|.+++|+|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~----------~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSG----------ECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTC----------CCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccc----------cCCCcEEecCCCCCeEEEEeCC
Confidence 4556899999999885 45899999999999999986321110000 0112234578999999999999
Q ss_pred CCC-EEEEEecCCeEEEEEccCCcc-----cccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceee
Q 038537 100 AEG-LLYTGSFDKTVKAWRVLDKRC-----TCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLT 172 (358)
Q Consensus 100 ~~~-~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 172 (358)
++. +|++|+.||.|++|++..+.. .....+..|...|.+++|+| ++.+|++++.||.|++||+++.... ...
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~-~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS-KPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS-SCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC-cce
Confidence 988 999999999999999987431 12345668999999999999 7889999999999999999865321 223
Q ss_pred eeecccCCceeEEEEeecCCCc-EEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEe--eeC-CEEEEeeCCCe
Q 038537 173 MTLKFQQSSVNALALSSFFDNY-FLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV--AIE-KLIFSGSEDTT 248 (358)
Q Consensus 173 ~~~~~~~~~i~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~l~~~~~dg~ 248 (358)
..+..|...|.+++|+| ++. ++++|+.||.|++||++.... ....+..|...+.++. |++ .+|++++.||.
T Consensus 271 ~~~~~~~~~v~~i~~~p--~~~~~l~tg~~dg~v~vwd~~~~~~---~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNP--YSEFILATGSADKTVALWDLRNLKL---KLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECS--SCTTEEEEEETTSEEEEEETTCTTS---CSEEEECCSSCEEEEEECSSCTTEEEEEETTSC
T ss_pred eEeecCCCCeEEEEeCC--CCCCEEEEEeCCCeEEEEeCCCCCC---CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc
Confidence 34457889999999998 665 799999999999999987432 3344666777776655 555 47999999999
Q ss_pred EEEEEcCCCcee----------eeeeeeecCcccceEEEEeecccceeeeCe-EEEEccCCCcEEEEEeee
Q 038537 249 IRVWRRAEGGCY----------HECLAVLDGHRGPVRCLAASLEMEKVVMGF-LVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 249 i~iwd~~~~~~~----------~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~-~l~s~~~dg~v~iw~~~~ 308 (358)
|++||+...... .+.+..+.+|...|++++|+|+ +. +|++++.||.|++|++..
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~------~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN------EPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSS------STTEEEEEETTSEEEEEEECH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCC------CCCEEEEEECCCCEEEeEccc
Confidence 999999873210 1467778899999999999999 66 899999999999999974
No 103
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-33 Score=241.89 Aligned_cols=234 Identities=18% Similarity=0.242 Sum_probs=192.1
Q ss_pred eEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCC
Q 038537 32 VRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDK 111 (358)
Q Consensus 32 v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg 111 (358)
+.++.++++.+++++.||.|++||+.+++...... ..|...|++++|+|++++|++|+.||
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~-------------------~~~~~~v~~v~~s~~~~~l~~~~~dg 156 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSALAE-------------------TDESTYVASVKWSHDGSFLSVGLGNG 156 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEE-------------------CCTTCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeee-------------------cCCCCCEEEEEECCCCCEEEEECCCC
Confidence 44578888889999999999999998876543221 24788999999999999999999999
Q ss_pred eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecC
Q 038537 112 TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFF 191 (358)
Q Consensus 112 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 191 (358)
.|++||+.+++ .+..+..|...|.+++|+ ++.+++++.||.|++||++... .....+..|...|.+++|+|
T Consensus 157 ~i~iwd~~~~~--~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~-- 227 (401)
T 4aez_A 157 LVDIYDVESQT--KLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIAN---HQIGTLQGHSSEVCGLAWRS-- 227 (401)
T ss_dssp CEEEEETTTCC--EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS---CEEEEEECCSSCEEEEEECT--
T ss_pred eEEEEECcCCe--EEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCc---ceeeEEcCCCCCeeEEEEcC--
Confidence 99999999887 777888999999999994 6799999999999999996433 33455677899999999998
Q ss_pred CCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEE--eeeC-CEEEEee--CCCeEEEEEcCCCceeeeeeee
Q 038537 192 DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL--VAIE-KLIFSGS--EDTTIRVWRRAEGGCYHECLAV 266 (358)
Q Consensus 192 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~ 266 (358)
++.+|++|+.||.|++||+++.. ....+..|...+.++ +|++ .++++++ .|+.|++||+.++ +++..
T Consensus 228 ~~~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~----~~~~~ 299 (401)
T 4aez_A 228 DGLQLASGGNDNVVQIWDARSSI----PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG----ARVNT 299 (401)
T ss_dssp TSSEEEEEETTSCEEEEETTCSS----EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC----CEEEE
T ss_pred CCCEEEEEeCCCeEEEccCCCCC----ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC----CEEEE
Confidence 99999999999999999998732 333355566666544 5544 5666655 7999999999988 44555
Q ss_pred ecCcccceEEEEeecccceeeeCeEEEE--ccCCCcEEEEEeee
Q 038537 267 LDGHRGPVRCLAASLEMEKVVMGFLVYS--SSLDQTFKVWRVKV 308 (358)
Q Consensus 267 ~~~h~~~v~~i~~~~~~~~~~~~~~l~s--~~~dg~v~iw~~~~ 308 (358)
+. |...|++++|+|+ +.+|++ |+.||.|++||++.
T Consensus 300 ~~-~~~~v~~~~~s~~------~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 300 VD-AGSQVTSLIWSPH------SKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp EE-CSSCEEEEEECSS------SSEEEEEECTTTCEEEEEEEET
T ss_pred Ee-CCCcEEEEEECCC------CCeEEEEeecCCCcEEEEecCC
Confidence 53 6678999999999 778888 66899999999985
No 104
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-34 Score=246.72 Aligned_cols=253 Identities=9% Similarity=-0.010 Sum_probs=187.7
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
++||++.|++|+ |...+ ..+.+|...|.++++.+.- .++.+.+|+.+.....
T Consensus 29 ~iASas~D~TV~--d~~~~---~~l~gh~~~v~~V~FsPdg-----~~~~~~~~~~~~~~~~------------------ 80 (588)
T 2j04_A 29 LYLTTFPDISIG--QPKYA---KDINCNSKNLFHVKEFPLE-----FENKLDFELAQQNGLL------------------ 80 (588)
T ss_dssp EEEECSSSEEEE--EECCC---SCCSSBGGGTEEEEEECCC-----CCCTTTTSCCCSSCSS------------------
T ss_pred EEEEEcCCceee--ccccc---ceecCCCccEEEEEECCCC-----CcceEEEEeCCCceEe------------------
Confidence 477888888888 54444 3446788888887764322 3444444443322111
Q ss_pred CCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccccccc-----CeEEEEEcCCCCEEEEEeCCC
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHES-----NVNAIVVNQDDGFVFTCSSDG 155 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg 155 (358)
. ..|...|.+++|+|+|..|++++.||.|++||... .+..+. |.. .|.+++|+|+|++|++|+.||
T Consensus 81 ---~-~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~----~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DG 151 (588)
T 2j04_A 81 ---N-SQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK----MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDG 151 (588)
T ss_dssp ---T-TSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE----EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTS
T ss_pred ---e-cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc----eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCC
Confidence 1 14578899999999999999999999999999543 344455 554 599999999999999999999
Q ss_pred cEEEEEceecCCcce---eeee----ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccccee-eccc
Q 038537 156 SVKIWRRVYRENSHT---LTMT----LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFL-QGHC 227 (358)
Q Consensus 156 ~i~~wd~~~~~~~~~---~~~~----~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~ 227 (358)
+|++||+..+..... .... ..+|...|.+++|+| ++ +++++.|+.|++||+...... .....+ .+|.
T Consensus 152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP--dg--Laass~D~tVrlWd~~~~~~~-~~~~tL~~~h~ 226 (588)
T 2j04_A 152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE--DV--LVAALSNNSVFSMTVSASSHQ-PVSRMIQNASR 226 (588)
T ss_dssp EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET--TE--EEEEETTCCEEEECCCSSSSC-CCEEEEECCCS
T ss_pred EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC--Cc--EEEEeCCCeEEEEECCCCccc-cceeeeccccc
Confidence 999999987542111 1223 366788999999998 77 888999999999999874311 111223 3676
Q ss_pred ceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEe--ecccceeeeCeEEEEccCCCcEEEEE
Q 038537 228 FAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAA--SLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~--~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
..|.++.+.++.|++++ ++.|++||+.++ +......+|.+.|.+++| +|+ +..|++++.||+ ++|.
T Consensus 227 ~~V~svaFsg~~LASa~-~~tIkLWd~~~~----~~~~~~~gh~~~V~~va~~~s~d------~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 227 RKITDLKIVDYKVVLTC-PGYVHKIDLKNY----SISSLKTGSLENFHIIPLNHEKE------STILLMSNKTSY-KVLL 294 (588)
T ss_dssp SCCCCEEEETTEEEEEC-SSEEEEEETTTT----EEEEEECSCCSCCCEEEETTCSS------CEEEEECSSCEE-EEEE
T ss_pred CcEEEEEEECCEEEEEe-CCeEEEEECCCC----eEEEEEcCCCceEEEEEeeeCCC------CCEEEEEcCCCC-EEEe
Confidence 67766666678999887 699999999987 332333389999999999 999 889999999999 9999
Q ss_pred ee
Q 038537 306 VK 307 (358)
Q Consensus 306 ~~ 307 (358)
.+
T Consensus 295 ~d 296 (588)
T 2j04_A 295 ED 296 (588)
T ss_dssp SS
T ss_pred ec
Confidence 75
No 105
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=263.97 Aligned_cols=289 Identities=11% Similarity=0.045 Sum_probs=201.7
Q ss_pred EEeeeCCCcEEEEeCCCceeeee-------eeecccceEEE----------------------------------E--ec
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGF-------IKARHGEVRAI----------------------------------L--AH 38 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~-------~~~h~~~v~~i----------------------------------~--~~ 38 (358)
+++++.||.|++||+.++..... +..|...|+++ + ++
T Consensus 367 l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spd 446 (902)
T 2oaj_A 367 ILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEY 446 (902)
T ss_dssp EEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSE
T ss_pred EEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccccc
Confidence 57788899999999977643221 22333444433 2 35
Q ss_pred CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEc
Q 038537 39 DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRV 118 (358)
Q Consensus 39 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 118 (358)
+++|++|+.||+|++||+.++..... ..... .+. .....+|...|++++|+|++++||+|+.||+|++||+
T Consensus 447 g~~laSgs~DgtVrlWd~~~g~~~~~-~~~~~-------~l~-~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~ 517 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYDASHGDIQDN-ASFEV-------NLS-RTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKY 517 (902)
T ss_dssp EEEEEEEETTSEEEEEESSCCTTTTT-BCEEE-------EHH-HHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred CcEEEEecCCCcEEEEECCCccccCC-ceEEe-------ech-hhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEe
Confidence 67999999999999999988742110 00000 000 0001278999999999999999999999999999999
Q ss_pred cCCcc-------------------------------------------cccccccccccCeEEEEEcCCCCEEEEEeCCC
Q 038537 119 LDKRC-------------------------------------------TCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG 155 (358)
Q Consensus 119 ~~~~~-------------------------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 155 (358)
.+++. .++..+.+|.+.|++++|+|+| +|++|+.|+
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~ 596 (902)
T 2oaj_A 518 EVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAG 596 (902)
T ss_dssp EECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTS
T ss_pred cCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCC
Confidence 86631 1355677899999999999999 999999999
Q ss_pred cEEEEEceecCCcceee-eeec-ccCCceeEEEEe-----ec-CCCcEEEEeecCCcEEEEEc---cCCcCCccccceee
Q 038537 156 SVKIWRRVYRENSHTLT-MTLK-FQQSSVNALALS-----SF-FDNYFLYSGSSDGSINFWEK---DKMSGGFNHGGFLQ 224 (358)
Q Consensus 156 ~i~~wd~~~~~~~~~~~-~~~~-~~~~~i~~~~~~-----~~-~~~~~l~~~~~dg~i~i~d~---~~~~~~~~~~~~~~ 224 (358)
+|++||++......... ..+. +|...|++++|+ |. +++.+|++|+.|++|++||+ .++. ....+.
T Consensus 597 tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~----~~~~~~ 672 (902)
T 2oaj_A 597 SLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK----FDVQLM 672 (902)
T ss_dssp EEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC----EEEEEE
T ss_pred cEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc----EEEEec
Confidence 99999985443211101 2333 788999999999 71 12489999999999999998 4422 222233
Q ss_pred ccc-----ceeEEEe-------------------------eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccce
Q 038537 225 GHC-----FAVLCLV-------------------------AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPV 274 (358)
Q Consensus 225 ~~~-----~~~~~~~-------------------------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v 274 (358)
+|. ..+..+. +++.+|+++ +..|+||++.+++ +......|...+
T Consensus 673 ~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k----~~~k~~~~~~~~ 746 (902)
T 2oaj_A 673 DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSK----STHKGFKYPLAA 746 (902)
T ss_dssp EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCC----EEEEECSSCEEE
T ss_pred CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCcccc----ceeeEcccceee
Confidence 332 3333332 233344444 7789999999984 454555666666
Q ss_pred EEE---E------eecccceeeeCeEEEEccCCCcEEEEEeeeCCCCccee
Q 038537 275 RCL---A------ASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKTM 316 (358)
Q Consensus 275 ~~i---~------~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 316 (358)
.++ . ++++ +..|++++.||.|++|++...+......
T Consensus 747 ~~v~~~~~~~~~~~~~~------~~~l~~~~~~g~i~~~s~p~l~~~~~~~ 791 (902)
T 2oaj_A 747 TGLSYISTVEKNNDRKN------LTVIITLEINGHLRVFTIPDFKEQMSEH 791 (902)
T ss_dssp EEEEEEEEECSSSCEEE------EEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEEEeccccccccC------ceEEEEEeCCCcEEEEECcchHHHhhcc
Confidence 776 5 5666 7899999999999999998766544333
No 106
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6.1e-33 Score=239.36 Aligned_cols=241 Identities=13% Similarity=0.167 Sum_probs=189.5
Q ss_pred EEEecCCE---EEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeC-CCCEEEEEec
Q 038537 34 AILAHDNM---LFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH-AEGLLYTGSF 109 (358)
Q Consensus 34 ~i~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~ 109 (358)
.++++++. +++++.||.|+||++........ ....+.+|...|++++|+| ++.+|++|+.
T Consensus 39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~----------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~ 102 (402)
T 2aq5_A 39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK----------------NVPLVCGHTAPVLDIAWCPHNDNVIASGSE 102 (402)
T ss_dssp SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT----------------TCCCBCCCSSCEEEEEECTTCTTEEEEEET
T ss_pred cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC----------------CCceEecCCCCEEEEEeCCCCCCEEEEEeC
Confidence 45555553 33578899999999965432210 1124478999999999999 8999999999
Q ss_pred CCeEEEEEccCCcc-----cccccccccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEceecCCcceeeeee--cccCCc
Q 038537 110 DKTVKAWRVLDKRC-----TCVDSFVAHESNVNAIVVNQDD-GFVFTCSSDGSVKIWRRVYRENSHTLTMTL--KFQQSS 181 (358)
Q Consensus 110 dg~i~iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~--~~~~~~ 181 (358)
||.|++||+.++.. ..+..+.+|...|.+++|+|++ ++|++++.||.|++||+++++ ....+ ..|...
T Consensus 103 dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 103 DCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA----AVLTLGPDVHPDT 178 (402)
T ss_dssp TSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE----EEEEECTTTCCSC
T ss_pred CCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC----ccEEEecCCCCCc
Confidence 99999999988742 2567788899999999999998 699999999999999996543 34445 678999
Q ss_pred eeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccccee-ecccc---eeEEEeeeCCEEEEe---eCCCeEEEEEc
Q 038537 182 VNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFL-QGHCF---AVLCLVAIEKLIFSG---SEDTTIRVWRR 254 (358)
Q Consensus 182 i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~l~~~---~~dg~i~iwd~ 254 (358)
|.+++|+| ++.+|++++.||.|++||+++... ...+ .+|.. ....+++++.+|++| +.|+.|++||+
T Consensus 179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~ 252 (402)
T 2aq5_A 179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTV----VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT 252 (402)
T ss_dssp EEEEEECT--TSSCEEEEETTSEEEEEETTTTEE----EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred eEEEEECC--CCCEEEEEecCCcEEEEeCCCCce----eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence 99999998 999999999999999999987432 2223 34443 346677889999999 79999999999
Q ss_pred CCCceeeeeeee-ecCcccceEEEEeecccceeeeCeEEE-EccCCCcEEEEEeeeC
Q 038537 255 AEGGCYHECLAV-LDGHRGPVRCLAASLEMEKVVMGFLVY-SSSLDQTFKVWRVKVM 309 (358)
Q Consensus 255 ~~~~~~~~~~~~-~~~h~~~v~~i~~~~~~~~~~~~~~l~-s~~~dg~v~iw~~~~~ 309 (358)
++.+. ++.. ...|...|.+++|+|+ +.+|+ +++.||.|++||+...
T Consensus 253 ~~~~~---~~~~~~~~~~~~v~~~~~s~~------~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 253 KHLEE---PLSLQELDTSSGVLLPFFDPD------TNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp TBCSS---CSEEEECCCCSSCEEEEEETT------TTEEEEEETTCSCEEEEEECSS
T ss_pred ccccC---CceEEeccCCCceeEEEEcCC------CCEEEEEEcCCCeEEEEEecCC
Confidence 98742 1222 2257788999999999 66775 6668999999999864
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=238.76 Aligned_cols=248 Identities=13% Similarity=0.069 Sum_probs=187.7
Q ss_pred cceEEEEe--cCCEE-EEEeCCceEEEEecc--cccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEE
Q 038537 30 GEVRAILA--HDNML-FTTNKDCKIRIWNFT--VSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLL 104 (358)
Q Consensus 30 ~~v~~i~~--~~~~l-~s~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 104 (358)
+.|.++.+ ++++| ++++.||.|++||+. +++....... ..|...|.+++|+|++++|
T Consensus 103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------~~~~~~v~~~~~sp~~~~l 164 (450)
T 2vdu_B 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR------------------FCFSKRPNAISIAEDDTTV 164 (450)
T ss_dssp CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE------------------EECSSCEEEEEECTTSSEE
T ss_pred CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec------------------ccCCCCceEEEEcCCCCEE
Confidence 36888877 56675 899999999999998 6554432110 2577889999999999999
Q ss_pred EEEecCCeEEEEEccCCccc--ccccccccccCeEEEEEcCC---CCEEEEEeCCCcEEEEEceecCCcceeeeeecccC
Q 038537 105 YTGSFDKTVKAWRVLDKRCT--CVDSFVAHESNVNAIVVNQD---DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ 179 (358)
Q Consensus 105 ~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 179 (358)
++|+.+|.|++|++.+++.. ....+.+|...|.+++|+|+ +++|++++.|+.|++||++++.... ....+|.
T Consensus 165 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~h~ 241 (450)
T 2vdu_B 165 IIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD---KWLFGHK 241 (450)
T ss_dssp EEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE---EECCCCS
T ss_pred EEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee---eeecCCC
Confidence 99999999999999887622 23367789999999999999 9999999999999999997654322 2245688
Q ss_pred CceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccccee---------------------eccccee--EEEeee
Q 038537 180 SSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFL---------------------QGHCFAV--LCLVAI 236 (358)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------------~~~~~~~--~~~~~~ 236 (358)
..|.+++|+ ++.+|++++.|+.|++||++++.......... ......+ ++++++
T Consensus 242 ~~v~~~~~s---d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 242 HFVSSICCG---KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp SCEEEEEEC---STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred CceEEEEEC---CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 999999998 78999999999999999998754221111000 0111223 455678
Q ss_pred CCEEEEee-CCCeEEEEEc--CCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccC------CCcEEEEEee
Q 038537 237 EKLIFSGS-EDTTIRVWRR--AEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSL------DQTFKVWRVK 307 (358)
Q Consensus 237 ~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~------dg~v~iw~~~ 307 (358)
+++|++++ .|+.|++|++ ..+. ..+.+..+..| +.|.+++|+|+ +.++++++. +..|.+|.+.
T Consensus 319 ~~~l~~~~~~d~~i~iw~~~~~~~~-~l~~~~~~~~~-~~v~~~~~~~~------~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEMSEKQKG-DLALKQIITFP-YNVISLSAHND------EFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp SSEEEEEETTCSEEEEEEECSSSTT-CEEEEEEEECS-SCEEEEEEETT------EEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEeccCCCC-ceeeccEeccC-CceEEEEecCC------cEEEEEecccCCCCCCcceEEEEEE
Confidence 89999998 8999999999 4331 12456677777 88999999997 555555553 5669999987
Q ss_pred eC
Q 038537 308 VM 309 (358)
Q Consensus 308 ~~ 309 (358)
..
T Consensus 391 ~~ 392 (450)
T 2vdu_B 391 LN 392 (450)
T ss_dssp TT
T ss_pred cC
Confidence 53
No 108
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=5.9e-33 Score=225.28 Aligned_cols=266 Identities=12% Similarity=0.050 Sum_probs=182.8
Q ss_pred EEeeeCCCcEEEEeCCCc---eeeeeeeecccceEEEEecC---CEEEEE-eCCceEEEEecccccc---cccccccccC
Q 038537 2 VFTGSSSTRIRVWRQPDC---VERGFIKARHGEVRAILAHD---NMLFTT-NKDCKIRIWNFTVSDN---FRTKKVTTLP 71 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~---~~~~~~~~h~~~v~~i~~~~---~~l~s~-~~dg~i~iw~~~~~~~---~~~~~~~~~~ 71 (358)
+++++. ..|++|+..+. +.+.++..|..+|..+.+.+ +++.++ +.=..-.++.+.-... .....
T Consensus 57 ~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l----- 130 (356)
T 2w18_A 57 IITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL----- 130 (356)
T ss_dssp EEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEE-----
T ss_pred EEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEE-----
Confidence 345554 57999999888 88999999999999998854 222222 2111111111110000 00000
Q ss_pred CCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe--cCCeEEEEEccC-CcccccccccccccCeEEEEEcC---CC
Q 038537 72 RRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS--FDKTVKAWRVLD-KRCTCVDSFVAHESNVNAIVVNQ---DD 145 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~---~~ 145 (358)
...+|...|..+ ++++++.+++ .|+.|++|++.. ++ .+..+..|...+..++|+| ++
T Consensus 131 ------------~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~--~~~s~~~~~~~v~~l~fs~~~g~~ 193 (356)
T 2w18_A 131 ------------LKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGG--GKENQFLMPPEETILTFAEVQGMQ 193 (356)
T ss_dssp ------------EEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSC--EEEEEEECCCSSCEEEEEEEETST
T ss_pred ------------EeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCc--eeeeeccCCCceeeEEeeccCCCC
Confidence 002344445554 5666666543 599999999944 65 5667778999999999999 77
Q ss_pred CEEEEEeCCCcEEEEEceecCCcceeeeeeccc---CCceeEEEEeecCCCcEE------------EEeecCCcEEEEEc
Q 038537 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQ---QSSVNALALSSFFDNYFL------------YSGSSDGSINFWEK 210 (358)
Q Consensus 146 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~l------------~~~~~dg~i~i~d~ 210 (358)
..|++++.|++|++||+.+++....+ ..| ...+.+++|+| ++.++ ++|+.|++|++||.
T Consensus 194 ~~LaSgS~D~TIkIWDl~TGk~l~tL----~g~~~~v~~v~~vafSp--dG~~lvs~s~~~~~w~laSGs~D~tIklWd~ 267 (356)
T 2w18_A 194 EALLGTTIMNNIVIWNLKTGQLLKKM----HIDDSYQASVCHKAYSE--MGLLFIVLSHPCAKESESLRSPVFQLIVINP 267 (356)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEE----ECCC---CCCEEEEEEE--TTEEEEEEC------------CCEEEEEEET
T ss_pred ceEEEecCCCcEEEEECCCCcEEEEE----cCCCcceeeeEEEEECC--CCCEEEEeccCCCcceeeccCCCcEEEEEEC
Confidence 99999999999999999776644333 333 34677789999 88776 56888999999999
Q ss_pred cCCcCCccccc-eeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceE-EEEeecccceeee
Q 038537 211 DKMSGGFNHGG-FLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVR-CLAASLEMEKVVM 288 (358)
Q Consensus 211 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~-~i~~~~~~~~~~~ 288 (358)
.++........ ...+|.....+.+.++.++++|+.|++|+|||+.++ +++.++.+|...+. .++|+|+
T Consensus 268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tG----k~l~tL~gH~~~vvs~vafSPD------ 337 (356)
T 2w18_A 268 KTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLG----QCTALLPPVSDQHWSFVKWSGT------ 337 (356)
T ss_dssp TTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTC----SEEEEECCC--CCCCEEEECSS------
T ss_pred CCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCC----cEEEEecCCCCCeEEEEEECCC------
Confidence 87432211100 023565556666777889999999999999999999 67888889987655 5899999
Q ss_pred CeEEEEccCCCcEEEEEe
Q 038537 289 GFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 289 ~~~l~s~~~dg~v~iw~~ 306 (358)
|++|++|+.|++|+|||+
T Consensus 338 G~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 338 DSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSEEEEECTTSCEEEEEE
T ss_pred CCEEEEEECCCcEEEecC
Confidence 889999999999999996
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.4e-32 Score=232.24 Aligned_cols=252 Identities=14% Similarity=0.174 Sum_probs=193.4
Q ss_pred CEEeeeCCCcEEEEeCCCc----eeeeeeeecccceEEEEec----CCEEEEEeCCceEEEEecccccccccccccccCC
Q 038537 1 MVFTGSSSTRIRVWRQPDC----VERGFIKARHGEVRAILAH----DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPR 72 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~----~~~~~~~~h~~~v~~i~~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 72 (358)
+|++|+.||.|++||+.++ +....+.+|...|.++.+. +++|++|+.||.|++||+..+.......
T Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~------ 98 (351)
T 3f3f_A 25 HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGR------ 98 (351)
T ss_dssp EEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSC------
T ss_pred EEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccccccc------
Confidence 4899999999999999876 4667788999999999884 6799999999999999998764321100
Q ss_pred CceeeeecCCCccccCCCceEEEEEeCC--CCEEEEEecCCeEEEEEccCCccccccccc-------------ccccCeE
Q 038537 73 RSSFLSFSKSNTQQQHRDCVSCMAFYHA--EGLLYTGSFDKTVKAWRVLDKRCTCVDSFV-------------AHESNVN 137 (358)
Q Consensus 73 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~~~v~ 137 (358)
.+.....+.+|...|.+++|+|+ +.+|++++.||.|++||+++++ .+..+. .|...+.
T Consensus 99 -----~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (351)
T 3f3f_A 99 -----RWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS--DLRSWTLTSEMKVLSIPPANHLQSDF 171 (351)
T ss_dssp -----SEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT--CTTCCEEEEEEESCSCCCSSCSCCCE
T ss_pred -----CcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH--HhccccccccccccccccCCccccee
Confidence 00111234689999999999999 9999999999999999998876 333322 5778999
Q ss_pred EEEEcCC---CCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCC----cEEEEeecCCcEEEEEc
Q 038537 138 AIVVNQD---DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDN----YFLYSGSSDGSINFWEK 210 (358)
Q Consensus 138 ~~~~~~~---~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~l~~~~~dg~i~i~d~ 210 (358)
+++|+|+ +..+++++.++.+.+|+...+. ......+..|...|.+++|+| ++ .+|++++.||.|++||+
T Consensus 172 ~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~i~~~~~~p--~~~~~~~~l~s~~~dg~i~iwd~ 247 (351)
T 3f3f_A 172 CLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK--LHVAAKLPGHKSLIRSISWAP--SIGRWYQLIATGCKDGRIRIFKI 247 (351)
T ss_dssp EEEECCCSSSCCEEEEEETTEEEEEEECTTSC--EEEEEECCCCCSCEEEEEECC--CSSCSSEEEEEEETTSCEEEEEE
T ss_pred EEEeccCCCCCcEEEEecCCCcEEEEccCCCc--eeeeeecCCCCcceeEEEECC--CCCCcceEEEEEcCCCeEEEEeC
Confidence 9999997 8999999999999777764332 223456677899999999998 76 89999999999999999
Q ss_pred cCCcCC------------------------------------------ccccceeecccceeEEE--eeeCCEEEEeeCC
Q 038537 211 DKMSGG------------------------------------------FNHGGFLQGHCFAVLCL--VAIEKLIFSGSED 246 (358)
Q Consensus 211 ~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~d 246 (358)
+..... ......+.+|...+.++ ++++++|++|+.|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d 327 (351)
T 3f3f_A 248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDD 327 (351)
T ss_dssp EECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETT
T ss_pred CCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCC
Confidence 863211 12233455677777555 5678999999999
Q ss_pred CeEEEEEcCCCceeeeeeeeecCc
Q 038537 247 TTIRVWRRAEGGCYHECLAVLDGH 270 (358)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~~~~h 270 (358)
|.|++||+.+++. .+.+..+..|
T Consensus 328 g~v~iw~~~~~~~-~~~~~~~~~~ 350 (351)
T 3f3f_A 328 GKVRLWKATYSNE-FKCMSVITAQ 350 (351)
T ss_dssp SCEEEEEECTTSC-EEEEEEEC--
T ss_pred CcEEEEecCcCcc-hhheeehccc
Confidence 9999999998743 2344444433
No 110
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=254.91 Aligned_cols=236 Identities=19% Similarity=0.183 Sum_probs=197.8
Q ss_pred CEEeeeCCCcEEEEeCC--CceeeeeeeecccceEEEEec----CCEEEEEeCCceEEEEecccccccccccccccCCCc
Q 038537 1 MVFTGSSSTRIRVWRQP--DCVERGFIKARHGEVRAILAH----DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRS 74 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~--~~~~~~~~~~h~~~v~~i~~~----~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 74 (358)
+|++|+.||.|+|||+. +++....+.+|.++|.++.+. +++|++|+.||.|++||+.+++....
T Consensus 23 ~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~---------- 92 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI---------- 92 (753)
T ss_dssp CEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEE----------
T ss_pred eEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccc----------
Confidence 58999999999999987 567788899999999999874 78999999999999999987642111
Q ss_pred eeeeecCCCccccCCCceEEEEEeCC--CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcC---------
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHA--EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ--------- 143 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--------- 143 (358)
..+.+|...|++++|+|+ +..+++|+.||.|++||+.++.......+..|...|.+++|+|
T Consensus 93 --------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~ 164 (753)
T 3jro_A 93 --------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (753)
T ss_dssp --------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-------
T ss_pred --------ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccc
Confidence 133679999999999999 9999999999999999998875445566778999999999999
Q ss_pred ----CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCC---CcEEEEeecCCcEEEEEccCCcCC
Q 038537 144 ----DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFD---NYFLYSGSSDGSINFWEKDKMSGG 216 (358)
Q Consensus 144 ----~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~ 216 (358)
++..+++|+.||.|++||++.+.........+..|...|.+++|+| + +.++++++.||.|++||++.....
T Consensus 165 ~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP--TVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp --CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC--CCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc--CCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 5899999999999999999887766667777888999999999999 7 899999999999999999885322
Q ss_pred cc-ccceeeccccee--EEEeeeCCEEEEeeCCCeEEEEEcCC
Q 038537 217 FN-HGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAE 256 (358)
Q Consensus 217 ~~-~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~ 256 (358)
.. .......|...+ .+++|++++|++|+.||.|++|++..
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 11 111223344444 56778899999999999999999985
No 111
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=235.41 Aligned_cols=276 Identities=16% Similarity=0.209 Sum_probs=203.4
Q ss_pred CCCcEEEEeCCCceeeeeeeecccceEEEEe---cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCC
Q 038537 7 SSTRIRVWRQPDCVERGFIKARHGEVRAILA---HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSN 83 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
.++.+++|++...+....+.+|.+.|.++.+ ++++|++|+.||.|++||+.+............ ......
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-------~~~~~~ 93 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV-------CSIGRD 93 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE-------EEECTT
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc-------cccccc
Confidence 3456788888888888889999999999988 468999999999999999998765443221100 000111
Q ss_pred ccccCCCceEEEEEeC-CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC---CCEEEEEeCCCcEEE
Q 038537 84 TQQQHRDCVSCMAFYH-AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD---DGFVFTCSSDGSVKI 159 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~ 159 (358)
...+|...|.+++|+| ++.+|++++.||.|++||+.+++ ....+ .+...+.++.++|. +.++++++.||.|++
T Consensus 94 ~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (408)
T 4a11_B 94 HPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ--TADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170 (408)
T ss_dssp CTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTE--EEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEE
T ss_pred ccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc--cceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEE
Confidence 2246999999999999 77899999999999999999887 44444 36788999999984 449999999999999
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCc-EEEEeecCCcEEEEEccCCcCCcc------------ccceeecc
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNY-FLYSGSSDGSINFWEKDKMSGGFN------------HGGFLQGH 226 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~------------~~~~~~~~ 226 (358)
||++++.. ...+..|...|.+++|+| ++. ++++++.||.|++||++....... .......|
T Consensus 171 ~d~~~~~~----~~~~~~~~~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (408)
T 4a11_B 171 CDLKSGSC----SHILQGHRQEILAVSWSP--RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAH 244 (408)
T ss_dssp EESSSSCC----CEEECCCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSC
T ss_pred EeCCCcce----eeeecCCCCcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccc
Confidence 99976543 345567899999999998 777 699999999999999987542111 11122456
Q ss_pred cceeEE--EeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCc-----ccceEEEEeecccceeeeCeEEEEccCCC
Q 038537 227 CFAVLC--LVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGH-----RGPVRCLAASLEMEKVVMGFLVYSSSLDQ 299 (358)
Q Consensus 227 ~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h-----~~~v~~i~~~~~~~~~~~~~~l~s~~~dg 299 (358)
...+.+ +++++++|++++.||.|++||+.+++. ......+ ...+........ +..+++++.|+
T Consensus 245 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 314 (408)
T 4a11_B 245 NGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN----TLVNYGKVCNNSKKGLKFTVSCGC------SSEFVFVPYGS 314 (408)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB----CCCCCCCCCCCCSSCCCCEECCSS------SSCEEEEEETT
T ss_pred cCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc----ceeccccccccccccceeEEecCC------CceEEEEecCC
Confidence 666654 556789999999999999999998843 2222211 111111122222 34666777899
Q ss_pred cEEEEEeee
Q 038537 300 TFKVWRVKV 308 (358)
Q Consensus 300 ~v~iw~~~~ 308 (358)
.|++||+..
T Consensus 315 ~i~v~d~~~ 323 (408)
T 4a11_B 315 TIAVYTVYS 323 (408)
T ss_dssp EEEEEETTT
T ss_pred EEEEEECcC
Confidence 999999974
No 112
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-31 Score=232.85 Aligned_cols=205 Identities=17% Similarity=0.115 Sum_probs=166.0
Q ss_pred cccCCCceEEEEEeCCCCEE-EEEecCCeEEEEEcc--CCccccccccc--ccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 038537 85 QQQHRDCVSCMAFYHAEGLL-YTGSFDKTVKAWRVL--DKRCTCVDSFV--AHESNVNAIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 85 ~~~h~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
..+|.+.|++++|+|++++| ++|+.||.|++||+. +++ .+..+. .|...|.+++|+|++++|++++.+|.|++
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~ 175 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN--VLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYS 175 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS--CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc--eeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEE
Confidence 34677789999999999996 899999999999998 666 455554 56789999999999999999999999999
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCC---CcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee-
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFD---NYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA- 235 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 235 (358)
|++............+..|...|.+++|+| + +.+|++++.|+.|++||+++..... ....+|...+.++.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp--~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~h~~~v~~~~~s 250 (450)
T 2vdu_B 176 IDINSIPEEKFTQEPILGHVSMLTDVHLIK--DSDGHQFIITSDRDEHIKISHYPQCFIVD---KWLFGHKHFVSSICCG 250 (450)
T ss_dssp EETTSCCCSSCCCCCSEECSSCEEEEEEEE--CTTSCEEEEEEETTSCEEEEEESCTTCEE---EECCCCSSCEEEEEEC
T ss_pred EecCCcccccccceeeecccCceEEEEEcC--CCCCCcEEEEEcCCCcEEEEECCCCceee---eeecCCCCceEEEEEC
Confidence 999766543323335567899999999999 7 8899999999999999998743211 124467776665544
Q ss_pred eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeec-------------------------CcccceEEEEeecccceeeeCe
Q 038537 236 IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLD-------------------------GHRGPVRCLAASLEMEKVVMGF 290 (358)
Q Consensus 236 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------------------~h~~~v~~i~~~~~~~~~~~~~ 290 (358)
++++|++++.|+.|++||+.+++. +..+. .+...|.+++|+|+ +.
T Consensus 251 d~~~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~------~~ 320 (450)
T 2vdu_B 251 KDYLLLSAGGDDKIFAWDWKTGKN----LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN------LP 320 (450)
T ss_dssp STTEEEEEESSSEEEEEETTTCCE----EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS------SS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcE----eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC------CC
Confidence 799999999999999999999843 33333 23457999999999 77
Q ss_pred EEEEcc-CCCcEEEEEe
Q 038537 291 LVYSSS-LDQTFKVWRV 306 (358)
Q Consensus 291 ~l~s~~-~dg~v~iw~~ 306 (358)
+|++++ .|+.|++|++
T Consensus 321 ~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 321 FVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEEETTCSEEEEEEE
T ss_pred EEEEEECCCCeEEEEEe
Confidence 888888 8999999999
No 113
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=3.6e-31 Score=229.53 Aligned_cols=250 Identities=20% Similarity=0.303 Sum_probs=197.4
Q ss_pred EEEEec-CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCC
Q 038537 33 RAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDK 111 (358)
Q Consensus 33 ~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg 111 (358)
+.|.|. ++.|++| .|++|+|||..+++...... +.+|...|++|+|+|+|++|++|+.||
T Consensus 109 ~~l~wS~~n~lAvg-ld~tV~lWd~~tg~~~~~~~------------------~~~~~~~V~sv~fspdg~~lasgs~Dg 169 (420)
T 4gga_A 109 NLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQ------------------MEQPGEYISSVAWIKEGNYLAVGTSSA 169 (420)
T ss_dssp BCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEE------------------CCSTTCCEEEEEECTTSSEEEEEETTS
T ss_pred eeEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEE------------------ecCCCCcEEEEEECCCCCEEEEEECCC
Confidence 345664 4566655 59999999999887654322 257888999999999999999999999
Q ss_pred eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecC
Q 038537 112 TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFF 191 (358)
Q Consensus 112 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 191 (358)
.|++||+.+++ .+..+.+|...+.+++++ +..+++|+.|+.+++||..... .....+..|...+..+.+.|
T Consensus 170 ~v~iWd~~~~~--~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~---~~~~~~~~h~~~~~~~~~~~-- 240 (420)
T 4gga_A 170 EVQLWDVQQQK--RLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAE---HHVATLSGHSQEVCGLRWAP-- 240 (420)
T ss_dssp CEEEEETTTTE--EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSS---CEEEEEECCSSCEEEEEECT--
T ss_pred eEEEEEcCCCc--EEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccc---eeeEEecccccceeeeeecC--
Confidence 99999999988 788888999999998885 6799999999999999986443 34456678999999999998
Q ss_pred CCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee--e-CCEEEE--eeCCCeEEEEEcCCCceeeeeeee
Q 038537 192 DNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA--I-EKLIFS--GSEDTTIRVWRRAEGGCYHECLAV 266 (358)
Q Consensus 192 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~ 266 (358)
++.++++++.|+.+++|+................|...+.++.+ . +.++++ |+.|+.|++||+.++ ++...
T Consensus 241 ~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~----~~~~~ 316 (420)
T 4gga_A 241 DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG----ACLSA 316 (420)
T ss_dssp TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT----EEEEE
T ss_pred CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc----cccee
Confidence 99999999999999999998866555555556677777766554 3 456655 458999999999998 45556
Q ss_pred ecCcccceEEEEeecccceeeeCeEEEE--ccCCCcEEEEEeeeCCCCcceeecccccCCCCc
Q 038537 267 LDGHRGPVRCLAASLEMEKVVMGFLVYS--SSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNS 327 (358)
Q Consensus 267 ~~~h~~~v~~i~~~~~~~~~~~~~~l~s--~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 327 (358)
+..| ..+.++.|+|+ +..+++ |+.||.|+|||+++ ..++..+.+|...
T Consensus 317 ~~~~-~~v~~~~~~~~------~~~lv~~sg~~d~~I~iwd~~~------~~~v~~l~gH~~~ 366 (420)
T 4gga_A 317 VDAH-SQVCSILWSPH------YKELISGHGFAQNQLVIWKYPT------MAKVAELKGHTSR 366 (420)
T ss_dssp EECS-SCEEEEEEETT------TTEEEEEECTTTCCEEEEETTT------CCEEEEECCCSSC
T ss_pred eccc-cceeeeeecCC------CCeEEEEEecCCCEEEEEECCC------CcEEEEEcCCCCC
Confidence 6544 57899999999 555554 44799999999873 4455666677543
No 114
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.3e-32 Score=233.61 Aligned_cols=227 Identities=12% Similarity=0.109 Sum_probs=171.7
Q ss_pred EeeeCCCcEEEEeCCCceee-eee--------eecccceEEE--EecCCEEEE--EeCCceEEEEecccccccccccccc
Q 038537 3 FTGSSSTRIRVWRQPDCVER-GFI--------KARHGEVRAI--LAHDNMLFT--TNKDCKIRIWNFTVSDNFRTKKVTT 69 (358)
Q Consensus 3 ~tg~~dg~v~vw~~~~~~~~-~~~--------~~h~~~v~~i--~~~~~~l~s--~~~dg~i~iw~~~~~~~~~~~~~~~ 69 (358)
++|+.|+.+|+|++.+.... ... ..+...+.++ +++++++++ ++.|++|+|||+.+.+....
T Consensus 98 ~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~----- 172 (365)
T 4h5i_A 98 TQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE----- 172 (365)
T ss_dssp HHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE-----
T ss_pred EEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE-----
Confidence 34567889999997654321 111 1223345555 457888765 45799999999988765432
Q ss_pred cCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEE
Q 038537 70 LPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVF 149 (358)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 149 (358)
..|...|.+++|+|+|++|++++.+ .+++|+..+++.........|...|.+++|+|++..++
T Consensus 173 ----------------~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~ 235 (365)
T 4h5i_A 173 ----------------IETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLI 235 (365)
T ss_dssp ----------------EECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEE
T ss_pred ----------------eCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEE
Confidence 2477789999999999999999865 56677776666333445567889999999999999999
Q ss_pred EEeCCC----cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccce-ee
Q 038537 150 TCSSDG----SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF-LQ 224 (358)
Q Consensus 150 ~~~~dg----~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~ 224 (358)
+++.|+ .+++|++............+..|...|++++|+| ++++|++|+.|+.|+|||+++++ .... +.
T Consensus 236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp--dg~~lasgs~D~~V~iwd~~~~~----~~~~~~~ 309 (365)
T 4h5i_A 236 AASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM--KGELAVLASNDNSIALVKLKDLS----MSKIFKQ 309 (365)
T ss_dssp EEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT--TSCEEEEEETTSCEEEEETTTTE----EEEEETT
T ss_pred EEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC--CCCceEEEcCCCEEEEEECCCCc----EEEEecC
Confidence 999887 5788888655444444456677889999999998 99999999999999999998743 2322 46
Q ss_pred cccceeEE--EeeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 225 GHCFAVLC--LVAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 225 ~~~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
+|...|.+ |+|++++|++|+.|++|+|||+...
T Consensus 310 gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 310 AHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 78887754 5678999999999999999999654
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=1.5e-30 Score=223.68 Aligned_cols=261 Identities=11% Similarity=0.051 Sum_probs=199.3
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEE-EEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNML-FTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
++++++.|+.|++||+.+++.+..+..|.. +.++.+ +++++ ++++.|+.|++||+.+++.....
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~------------ 70 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATV------------ 70 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEE------------
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEE------------
Confidence 478899999999999999999988887754 677776 56665 67779999999999877654321
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEE-EecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEE-EEEeCCC
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYT-GSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFV-FTCSSDG 155 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg 155 (358)
. +...+.+++|+|++++|+. ++.++.|++||+.+++ .+..+. +...+.+++|+|+++.+ ++++.++
T Consensus 71 --------~-~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~--~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~ 138 (391)
T 1l0q_A 71 --------P-AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--VAGTVK-TGKSPLGLALSPDGKKLYVTNNGDK 138 (391)
T ss_dssp --------E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEE-CSSSEEEEEECTTSSEEEEEETTTT
T ss_pred --------E-CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCe--EEEEEe-CCCCcceEEECCCCCEEEEEeCCCC
Confidence 2 2237999999999998755 4567999999999887 444444 34578999999999977 6778899
Q ss_pred cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEE-EEeecCCcEEEEEccCCcCCccccceeecc-cceeEEE
Q 038537 156 SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFL-YSGSSDGSINFWEKDKMSGGFNHGGFLQGH-CFAVLCL 233 (358)
Q Consensus 156 ~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~ 233 (358)
.|++||+.+++. ...+.. ...+..++|+| +++.+ ++++.++.|++||+++... ......+ .....++
T Consensus 139 ~v~~~d~~~~~~----~~~~~~-~~~~~~~~~~~--dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~~~~~~~~~~ 207 (391)
T 1l0q_A 139 TVSVINTVTKAV----INTVSV-GRSPKGIAVTP--DGTKVYVANFDSMSISVIDTVTNSV----IDTVKVEAAPSGIAV 207 (391)
T ss_dssp EEEEEETTTTEE----EEEEEC-CSSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEE----EEEEECSSEEEEEEE
T ss_pred EEEEEECCCCcE----EEEEec-CCCcceEEECC--CCCEEEEEeCCCCEEEEEECCCCeE----EEEEecCCCccceEE
Confidence 999999965542 223332 35668999998 88777 6778899999999987432 1222211 2233566
Q ss_pred eeeCCEEEEee---CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEE-EEccCCCcEEEEEeee
Q 038537 234 VAIEKLIFSGS---EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLV-YSSSLDQTFKVWRVKV 308 (358)
Q Consensus 234 ~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l-~s~~~dg~v~iw~~~~ 308 (358)
++++++|++++ .++.|++||+.++ +.+..+..|. .+.+++|+|+ +++| ++++.|+.|++||+..
T Consensus 208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~----~~~~~~~~~~-~~~~~~~s~d------g~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 208 NPEGTKAYVTNVDKYFNTVSMIDTGTN----KITARIPVGP-DPAGIAVTPD------GKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEETTTT----EEEEEEECCS-SEEEEEECTT------SSEEEEEETTTTEEEEEETTT
T ss_pred CCCCCEEEEEecCcCCCcEEEEECCCC----eEEEEEecCC-CccEEEEccC------CCEEEEEcCCCCEEEEEECCC
Confidence 77888888887 6899999999988 4566666664 4789999999 6655 7889999999999874
No 116
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.6e-31 Score=230.98 Aligned_cols=239 Identities=20% Similarity=0.277 Sum_probs=190.3
Q ss_pred CEEeeeCCCcEEEEeCCC----------ceeeeeeeecccceEEEEec--CC-EEEEEeCCceEEEEecccccccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPD----------CVERGFIKARHGEVRAILAH--DN-MLFTTNKDCKIRIWNFTVSDNFRTKKV 67 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~----------~~~~~~~~~h~~~v~~i~~~--~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~ 67 (358)
+|++|+.||.|++|++.+ ......+.+|...|.+++++ +. +|++|+.||.|++|++.........
T Consensus 143 ~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-- 220 (430)
T 2xyi_A 143 VIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV-- 220 (430)
T ss_dssp EEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE--
T ss_pred EEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce--
Confidence 488999999999999976 67788889999999999885 44 9999999999999999874322110
Q ss_pred cccCCCceeeeecCCCccccCCCceEEEEEeC-CCCEEEEEecCCeEEEEEccCCc-ccccccccccccCeEEEEEcCCC
Q 038537 68 TTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH-AEGLLYTGSFDKTVKAWRVLDKR-CTCVDSFVAHESNVNAIVVNQDD 145 (358)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~ 145 (358)
......+.+|...|.+++|+| ++.+|++++.||.|++||+++.. ...+..+..|...|++++|+|++
T Consensus 221 -----------~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 289 (430)
T 2xyi_A 221 -----------IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289 (430)
T ss_dssp -----------EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSC
T ss_pred -----------eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCC
Confidence 011123468999999999999 67899999999999999998763 12566677899999999999988
Q ss_pred C-EEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCC-cEEEEeecCCcEEEEEccCCcCC-------
Q 038537 146 G-FVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDN-YFLYSGSSDGSINFWEKDKMSGG------- 216 (358)
Q Consensus 146 ~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~------- 216 (358)
. ++++|+.||.|++||++... .....+..|...|.+++|+| ++ .+|++++.||.|++||+......
T Consensus 290 ~~~l~tg~~dg~v~vwd~~~~~---~~~~~~~~h~~~v~~i~~sp--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 364 (430)
T 2xyi_A 290 EFILATGSADKTVALWDLRNLK---LKLHSFESHKDEIFQVQWSP--HNETILASSGTDRRLHVWDLSKIGEEQSTEDAE 364 (430)
T ss_dssp TTEEEEEETTSEEEEEETTCTT---SCSEEEECCSSCEEEEEECS--SCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHH
T ss_pred CCEEEEEeCCCeEEEEeCCCCC---CCeEEeecCCCCEEEEEECC--CCCCEEEEEeCCCcEEEEeCCCCccccCccccc
Confidence 7 78899999999999997533 23445567899999999998 66 57999999999999999873221
Q ss_pred ---ccccceeecccceeEEEe--eeCC-EEEEeeCCCeEEEEEcCCC
Q 038537 217 ---FNHGGFLQGHCFAVLCLV--AIEK-LIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 217 ---~~~~~~~~~~~~~~~~~~--~~~~-~l~~~~~dg~i~iwd~~~~ 257 (358)
........+|...+.++. ++++ +|++++.||.|++|++...
T Consensus 365 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 365 DGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 133344556776676555 5566 8999999999999999764
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=9.3e-31 Score=221.55 Aligned_cols=266 Identities=11% Similarity=0.082 Sum_probs=191.0
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEE-EEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNML-FTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
+|++|+.+| ++|||+.+++.......+...+.++.++++.+ ++++.|++|++||+.+++.+..
T Consensus 33 ~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~--------------- 96 (355)
T 3vu4_A 33 CLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR--------------- 96 (355)
T ss_dssp EEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE---------------
T ss_pred EEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE---------------
Confidence 367777665 88999988776655444444444555667766 5678889999999988765532
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCC-cccccccccccccCeEEEEEcCCCCEEEE--EeCCCc
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDK-RCTCVDSFVAHESNVNAIVVNQDDGFVFT--CSSDGS 156 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~ 156 (358)
..|...|.+++++++. ++++ .|+.|++||+.+. + .+..+.. +...+++++ .++++ |+.||.
T Consensus 97 ------~~~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~--~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~ 160 (355)
T 3vu4_A 97 ------IKVDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWK--RITDDIR---FGGVCEFSN--GLLVYSNEFNLGQ 160 (355)
T ss_dssp ------EECSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCC--BSSCCEE---EEEEEEEET--TEEEEEESSCTTC
T ss_pred ------EECCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCce--eeEEecc---CCceEEEEc--cEEEEeCCCcCcE
Confidence 2356689999998764 4443 4789999999887 4 4555543 445566776 56665 578999
Q ss_pred EEEEEceecCCc----c-------ee-eeeecccCCceeEEEEeecCCCcEEEEeecCCc-EEEEEccCCcCCcccccee
Q 038537 157 VKIWRRVYRENS----H-------TL-TMTLKFQQSSVNALALSSFFDNYFLYSGSSDGS-INFWEKDKMSGGFNHGGFL 223 (358)
Q Consensus 157 i~~wd~~~~~~~----~-------~~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~ 223 (358)
|++||+.++... . .. ...+.+|...|.+++|+| ++.+|++|+.|++ |++||++++. ....+
T Consensus 161 v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~--~g~~l~s~s~d~~~v~iwd~~~~~----~~~~~ 234 (355)
T 3vu4_A 161 IHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR--KSDMVATCSQDGTIIRVFKTEDGV----LVREF 234 (355)
T ss_dssp EEEEECCC------------------CCEEECCCSSCEEEEEECT--TSSEEEEEETTCSEEEEEETTTCC----EEEEE
T ss_pred EEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC--CCCEEEEEeCCCCEEEEEECCCCc----EEEEE
Confidence 999999764310 0 11 456778999999999998 9999999999998 9999999743 33334
Q ss_pred e-c-ccceeEE--EeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeee---------------------cCcccceEEEE
Q 038537 224 Q-G-HCFAVLC--LVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVL---------------------DGHRGPVRCLA 278 (358)
Q Consensus 224 ~-~-~~~~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------------------~~h~~~v~~i~ 278 (358)
. + |...+.+ ++|++++|++++.|+.|++||+...... ....+ ..+..+...++
T Consensus 235 ~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 312 (355)
T 3vu4_A 235 RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDN--KRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIA 312 (355)
T ss_dssp ECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCC--CSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEE
T ss_pred EcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCc--ccccccceeeccccccccceeEEEeccCCCCCceEEE
Confidence 4 4 6666654 5668899999999999999999765321 11111 11223347799
Q ss_pred eecccceeeeCeEEEEccCCCcEEEEEeeeCCCC
Q 038537 279 ASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQ 312 (358)
Q Consensus 279 ~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~ 312 (358)
|+++ +.+|++++.||.+++|++....+.
T Consensus 313 ~~~d------~~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 313 WISE------SSLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp ESSS------SEEEEEETTTTEEEEEEEEEETTT
T ss_pred EeCC------CCEEEEEeCCCeEEEEEEEcCCCC
Confidence 9999 889999999999999999865443
No 118
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.6e-30 Score=216.96 Aligned_cols=251 Identities=18% Similarity=0.265 Sum_probs=192.8
Q ss_pred eEEEEec-CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecC
Q 038537 32 VRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD 110 (358)
Q Consensus 32 v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 110 (358)
.++|+|. +++|++ +.|++|+|||+.+++.+.... +.+|...|++++|+|++++|++|+.|
T Consensus 28 ~~~l~WS~~~~lAv-g~D~tV~iWd~~tg~~~~~~~------------------~~~~~~~V~~v~~~~~~~~l~sgs~D 88 (318)
T 4ggc_A 28 LNLVDWSSGNVLAV-ALDNSVYLWSASSGDILQLLQ------------------MEQPGEYISSVAWIKEGNYLAVGTSS 88 (318)
T ss_dssp CBCEEECTTSEEEE-EETTEEEEEETTTCCEEEEEE------------------CCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred ceEEEECCCCEEEE-EeCCEEEEEECCCCCEEEEEE------------------ecCCCCeEEEEEECCCCCEEEEEECC
Confidence 3567775 345555 569999999999887654322 25788899999999999999999999
Q ss_pred CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeec
Q 038537 111 KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSF 190 (358)
Q Consensus 111 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 190 (358)
|+|++||+++++ .+..+.+|...+.++.+ ++..+++++.++.+++|+..... .....+..|...+..+.+.+
T Consensus 89 g~v~iw~~~~~~--~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~- 160 (318)
T 4ggc_A 89 AEVQLWDVQQQK--RLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAE---HHVATLSGHSQEVCGLRWAP- 160 (318)
T ss_dssp SEEEEEETTTTE--EEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS---CEEEEEECCSSCEEEEEECT-
T ss_pred CcEEEeecCCce--eEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCc---eeEEEEcCccCceEEEEEcC-
Confidence 999999999988 78888899988887665 46799999999999999986443 34455677899999999998
Q ss_pred CCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee--eC-CE--EEEeeCCCeEEEEEcCCCceeeeeee
Q 038537 191 FDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA--IE-KL--IFSGSEDTTIRVWRRAEGGCYHECLA 265 (358)
Q Consensus 191 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~--l~~~~~dg~i~iwd~~~~~~~~~~~~ 265 (358)
++.++++++.||.|++||+++.+...........+...+.++.. .+ .. +++++.++.|++||..... ..
T Consensus 161 -~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~----~~- 234 (318)
T 4ggc_A 161 -DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----CL- 234 (318)
T ss_dssp -TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC----EE-
T ss_pred -CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc----cc-
Confidence 89999999999999999999866555555555566666655543 33 33 3567789999999998873 22
Q ss_pred eecCcccceEEEEeecccceeeeCeEEE--EccCCCcEEEEEeeeCCCCcceeecccccCCCCc
Q 038537 266 VLDGHRGPVRCLAASLEMEKVVMGFLVY--SSSLDQTFKVWRVKVMPDQEKTMCLDYSDYHSNS 327 (358)
Q Consensus 266 ~~~~h~~~v~~i~~~~~~~~~~~~~~l~--s~~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 327 (358)
....+...+..+.|+|+ +..++ +|+.||.|++||+++ ..++..+.+|...
T Consensus 235 ~~~~~~~~v~~~~~~~~------~~~~~~~sg~~d~~i~iwd~~~------~~~~~~l~gH~~~ 286 (318)
T 4ggc_A 235 SAVDAHSQVCSILWSPH------YKELISGHGFAQNQLVIWKYPT------MAKVAELKGHTSR 286 (318)
T ss_dssp EEEECSSCEEEEEEETT------TTEEEEEECTTTCCEEEEETTT------CCEEEEECCCSSC
T ss_pred ccccceeeeeeeeeccc------ccceEEEEEcCCCEEEEEECCC------CcEEEEEcCCCCC
Confidence 23356778999999999 44444 456899999999873 3455556666543
No 119
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=1.7e-30 Score=226.24 Aligned_cols=262 Identities=10% Similarity=0.078 Sum_probs=201.7
Q ss_pred CEEeeeCCCcEEEEeCCCceeee-----eeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCC
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERG-----FIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~-----~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
++++++.|+.|++||+.+++... .+.+|.+.|.++.+ ++.++++++.|+.|++||+.+++...
T Consensus 136 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---------- 205 (433)
T 3bws_A 136 LAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---------- 205 (433)
T ss_dssp EEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE----------
T ss_pred EEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE----------
Confidence 36778889999999999988876 44578889999887 57789999999999999998765542
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEE-EecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEe
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYT-GSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCS 152 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 152 (358)
.+..|...+.+++|+|+++.+++ ++.|+.|++||+.+++ .+..+.. ...+.+++|+|+++.+++++
T Consensus 206 ----------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~-~~~~~~~~~~~~g~~l~~~~ 272 (433)
T 3bws_A 206 ----------TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--EIRKTDK-IGLPRGLLLSKDGKELYIAQ 272 (433)
T ss_dssp ----------EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE--EEEECCC-CSEEEEEEECTTSSEEEEEE
T ss_pred ----------EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc--EEEEecC-CCCceEEEEcCCCCEEEEEE
Confidence 22467888999999999998854 4579999999998887 4555544 45599999999999999888
Q ss_pred --------CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCc-EEEEeecCCcEEEEEccCCcCCcccccee
Q 038537 153 --------SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNY-FLYSGSSDGSINFWEKDKMSGGFNHGGFL 223 (358)
Q Consensus 153 --------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 223 (358)
.||.|++||+.+++... . ..+...+..++|+| +++ ++++++.|+.|++||+.+... ...+
T Consensus 273 ~~~~~~~~~dg~i~~~d~~~~~~~~----~-~~~~~~~~~~~~~~--~g~~l~~~~~~~~~v~v~d~~~~~~----~~~~ 341 (433)
T 3bws_A 273 FSASNQESGGGRLGIYSMDKEKLID----T-IGPPGNKRHIVSGN--TENKIYVSDMCCSKIEVYDLKEKKV----QKSI 341 (433)
T ss_dssp EESCTTCSCCEEEEEEETTTTEEEE----E-EEEEECEEEEEECS--STTEEEEEETTTTEEEEEETTTTEE----EEEE
T ss_pred CCCCccccCCCeEEEEECCCCcEEe----e-ccCCCCcceEEECC--CCCEEEEEecCCCEEEEEECCCCcE----EEEe
Confidence 58899999997553222 1 23455788999998 776 556678999999999986332 1112
Q ss_pred e-cccceeEEEeeeCCEEEEeeC---------------CCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceee
Q 038537 224 Q-GHCFAVLCLVAIEKLIFSGSE---------------DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVV 287 (358)
Q Consensus 224 ~-~~~~~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~ 287 (358)
. .......+++++++++++++. ||.|++||+.++ +.+..+.. ...+.+++|+|+
T Consensus 342 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~----~~~~~~~~-~~~~~~~~~s~d----- 411 (433)
T 3bws_A 342 PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD----TVKEFWEA-GNQPTGLDVSPD----- 411 (433)
T ss_dssp ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT----EEEEEEEC-SSSEEEEEECTT-----
T ss_pred cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC----cEEEEecC-CCCCceEEEcCC-----
Confidence 2 222334566778888888776 579999999988 45555555 457899999999
Q ss_pred eCeEEEEcc-CCCcEEEEEee
Q 038537 288 MGFLVYSSS-LDQTFKVWRVK 307 (358)
Q Consensus 288 ~~~~l~s~~-~dg~v~iw~~~ 307 (358)
+++|++++ .|+.|++|+++
T Consensus 412 -g~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 412 -NRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp -SCEEEEEETTTTEEEEEEET
T ss_pred -CCEEEEEECCCCeEEEEEec
Confidence 77887766 59999999986
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.6e-30 Score=220.09 Aligned_cols=248 Identities=13% Similarity=0.127 Sum_probs=172.8
Q ss_pred EEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCC
Q 038537 13 VWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRD 90 (358)
Q Consensus 13 vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 90 (358)
||++.+.+.+.....|...|.+++| ++++|++|+.+| +++|++...+.... .+..
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~----------------------~~~~ 59 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS----------------------QEMR 59 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE----------------------EECS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee----------------------eecC
Confidence 5667777777778899999999988 577888888775 78999876543321 1222
Q ss_pred ceEEEEEeCCCCEE-EEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceec-CCc
Q 038537 91 CVSCMAFYHAEGLL-YTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYR-ENS 168 (358)
Q Consensus 91 ~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~ 168 (358)
.+..+++.++++.+ ++++.|++|++||+.+++ .+..+. +..+|.+++++++. ++++ .|+.|++||+.+. +..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~--~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~ 133 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQ--DVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRI 133 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTTTE--EEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBS
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCCCc--EEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceee
Confidence 47788888888877 567888999999999887 555554 67799999998764 4443 4789999999765 322
Q ss_pred ceeeeeecccCCceeEEEEeecCCCcEEEE--eecCCcEEEEEccCCcCC-----------ccc-cceeecccceeEEE-
Q 038537 169 HTLTMTLKFQQSSVNALALSSFFDNYFLYS--GSSDGSINFWEKDKMSGG-----------FNH-GGFLQGHCFAVLCL- 233 (358)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~-----------~~~-~~~~~~~~~~~~~~- 233 (358)
..+. . ....+++++ .++++ |+.||.|++||+++.... ... ...+.+|...+.++
T Consensus 134 ~~~~----~---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~ 202 (355)
T 3vu4_A 134 TDDI----R---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR 202 (355)
T ss_dssp SCCE----E---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEE
T ss_pred EEec----c---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEE
Confidence 2221 1 333445553 45555 688999999999874310 001 44567888877555
Q ss_pred -eeeCCEEEEeeCCCe-EEEEEcCCCceeeeeeeeec-C-cccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 234 -VAIEKLIFSGSEDTT-IRVWRRAEGGCYHECLAVLD-G-HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 234 -~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~-~-h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
+|++++|++|+.||+ |++||++++ +++..+. + |...|++++|+|+ +.+|++++.|++|++||++..
T Consensus 203 ~s~~g~~l~s~s~d~~~v~iwd~~~~----~~~~~~~~g~h~~~v~~~~~s~~------~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 203 LNRKSDMVATCSQDGTIIRVFKTEDG----VLVREFRRGLDRADVVDMKWSTD------GSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp ECTTSSEEEEEETTCSEEEEEETTTC----CEEEEEECTTCCSCEEEEEECTT------SCEEEEEETTCEEEEEESSCC
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCC----cEEEEEEcCCCCCcEEEEEECCC------CCEEEEEECCCEEEEEEccCC
Confidence 568899999999998 999999998 5567776 5 9999999999999 889999999999999999864
Q ss_pred C
Q 038537 310 P 310 (358)
Q Consensus 310 ~ 310 (358)
.
T Consensus 273 ~ 273 (355)
T 3vu4_A 273 Q 273 (355)
T ss_dssp S
T ss_pred C
Confidence 3
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-31 Score=223.70 Aligned_cols=232 Identities=6% Similarity=-0.026 Sum_probs=170.8
Q ss_pred ecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEE
Q 038537 37 AHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAW 116 (358)
Q Consensus 37 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iw 116 (358)
.++.++++|+.||.|++||+.+++.+.... ...|.++.++|+ +++++.|++|++|
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~----------------------~~~v~~~~~~~~---~~s~s~D~~i~~w 100 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTIT----------------------TPNPRTGGEHPA---IISRGPCNRLLLL 100 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEE----------------------EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEe----------------------cCCceeeeeCCc---eEEecCCCeEEEE
Confidence 367899999999999999999876553221 345777888887 9999999999999
Q ss_pred EccCCc-------cccccccc-ccccCeEEEEEcC--CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEE
Q 038537 117 RVLDKR-------CTCVDSFV-AHESNVNAIVVNQ--DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALA 186 (358)
Q Consensus 117 d~~~~~-------~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~ 186 (358)
+..... ...+..+. .|..+|.+++|+| +++++++++.||.|++||+++++. .......+...+.+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~~i~~~~ 177 (343)
T 3lrv_A 101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ---YIVHSAKSDVEYSSGV 177 (343)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE---EEEECCCSSCCCCEEE
T ss_pred EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE---EEEEecCCCCceEEEE
Confidence 776321 00122222 5668899999999 999999999999999999976543 1112233556799999
Q ss_pred EeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec-ccceeEEE--eeeCCEEEEeeCCCeEEEEEcCCCceeeee
Q 038537 187 LSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG-HCFAVLCL--VAIEKLIFSGSEDTTIRVWRRAEGGCYHEC 263 (358)
Q Consensus 187 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 263 (358)
|+| ++.+|++|+.||.|++||+++..... ..+.. |...+.++ +|++.+|++++ |+.|++||+++.+... .
T Consensus 178 ~~p--dg~~lasg~~dg~i~iwd~~~~~~~~---~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~-~ 250 (343)
T 3lrv_A 178 LHK--DSLLLALYSPDGILDVYNLSSPDQAS---SRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL-A 250 (343)
T ss_dssp ECT--TSCEEEEECTTSCEEEEESSCTTSCC---EECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB-S
T ss_pred ECC--CCCEEEEEcCCCEEEEEECCCCCCCc---cEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce-e
Confidence 998 99999999999999999999854321 22444 77777555 56789999999 5599999999874311 1
Q ss_pred eeeecCcccceE--EEEeecccceeeeCeEEEEccC-CCcEEEEEeeeC
Q 038537 264 LAVLDGHRGPVR--CLAASLEMEKVVMGFLVYSSSL-DQTFKVWRVKVM 309 (358)
Q Consensus 264 ~~~~~~h~~~v~--~i~~~~~~~~~~~~~~l~s~~~-dg~v~iw~~~~~ 309 (358)
+..+..|...+. +++|+|+ +++|++++. |+.|++|++...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~------g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 251 YPTYTIPEFKTGTVTYDIDDS------GKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp SCCCBC-----CCEEEEECTT------SSEEEEEETTTTEEEEEEECTT
T ss_pred ecccccccccccceEEEECCC------CCEEEEecCCCCcEEEEEEccc
Confidence 222223444444 6999999 889999888 999999999754
No 122
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.97 E-value=3.8e-29 Score=215.88 Aligned_cols=260 Identities=12% Similarity=0.041 Sum_probs=194.2
Q ss_pred EEeee----CCC----cEEEEeC--CCceee--eeeeecccceEEEEec----------------CCEEEEEeCC-----
Q 038537 2 VFTGS----SST----RIRVWRQ--PDCVER--GFIKARHGEVRAILAH----------------DNMLFTTNKD----- 48 (358)
Q Consensus 2 l~tg~----~dg----~v~vw~~--~~~~~~--~~~~~h~~~v~~i~~~----------------~~~l~s~~~d----- 48 (358)
+++|+ .|| .|+|||+ .+++.+ ..+.+|...+..+++. +..++.++.+
T Consensus 78 ~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~ 157 (415)
T 2hqs_A 78 VVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQF 157 (415)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSC
T ss_pred EEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCc
Confidence 45665 467 8999999 888877 5588888877765432 6677766654
Q ss_pred -ceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCC---eEEEEEccCCccc
Q 038537 49 -CKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDK---TVKAWRVLDKRCT 124 (358)
Q Consensus 49 -g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~ 124 (358)
+.|++||++..... .+.+|...+.+++|+|+|+.|++++.++ .|++||+.+++
T Consensus 158 ~~~i~i~d~~g~~~~---------------------~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~-- 214 (415)
T 2hqs_A 158 PYELRVSDYDGYNQF---------------------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-- 214 (415)
T ss_dssp CEEEEEEETTSCSCE---------------------EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--
T ss_pred cceEEEEcCCCCCCE---------------------EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCc--
Confidence 79999999753321 3357888999999999999999999885 99999999887
Q ss_pred ccccccccccCeEEEEEcCCCCEEE-EEeCCCc--EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec
Q 038537 125 CVDSFVAHESNVNAIVVNQDDGFVF-TCSSDGS--VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS 201 (358)
Q Consensus 125 ~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 201 (358)
. ..+..|...+.+++|+|+++.|+ +++.++. |++||+.+++. ..+..+...+.+++|+| +++.|++++.
T Consensus 215 ~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~sp--dg~~l~~~s~ 286 (415)
T 2hqs_A 215 V-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-----RQVTDGRSNNTEPTWFP--DSQNLAFTSD 286 (415)
T ss_dssp E-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----EECCCCSSCEEEEEECT--TSSEEEEEEC
T ss_pred E-EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-----EeCcCCCCcccceEECC--CCCEEEEEEC
Confidence 2 34566788999999999999887 6666655 99999865432 33455678899999998 9998888876
Q ss_pred -CC--cEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCC---CeEEEEEcCCCceeeeeeeeecCcccceE
Q 038537 202 -DG--SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSED---TTIRVWRRAEGGCYHECLAVLDGHRGPVR 275 (358)
Q Consensus 202 -dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 275 (358)
++ .|++||+.+... ... ...+......+++|++++|++++.+ ..|++||+.+++. ..+..|. .+.
T Consensus 287 ~~g~~~i~~~d~~~~~~--~~l-~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-----~~l~~~~-~~~ 357 (415)
T 2hqs_A 287 QAGRPQVYKVNINGGAP--QRI-TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-----QVLSSTF-LDE 357 (415)
T ss_dssp TTSSCEEEEEETTSSCC--EEC-CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-----EECCCSS-SCE
T ss_pred CCCCcEEEEEECCCCCE--EEE-ecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-----EEecCCC-CcC
Confidence 45 677778876331 110 1112223346778899999888764 5899999998742 3344554 899
Q ss_pred EEEeecccceeeeCeEEEEccCCC---cEEEEEee
Q 038537 276 CLAASLEMEKVVMGFLVYSSSLDQ---TFKVWRVK 307 (358)
Q Consensus 276 ~i~~~~~~~~~~~~~~l~s~~~dg---~v~iw~~~ 307 (358)
+++|+|+ |++|++++.|+ .|.+||+.
T Consensus 358 ~~~~spd------g~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 358 TPSLAPN------GTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEEECTT------SSEEEEEEEETTEEEEEEEETT
T ss_pred CeEEcCC------CCEEEEEEcCCCccEEEEEECC
Confidence 9999999 88888888777 78888875
No 123
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=5.1e-30 Score=220.08 Aligned_cols=230 Identities=11% Similarity=0.106 Sum_probs=163.6
Q ss_pred CEEeeeCCCcEEEEeCCCceee-----eeeeecccceEEEEe----------cCCEEEEEeCCceEEEEecccccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPDCVER-----GFIKARHGEVRAILA----------HDNMLFTTNKDCKIRIWNFTVSDNFRTK 65 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~-----~~~~~h~~~v~~i~~----------~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 65 (358)
+|++|+.|++|+|||..+++.. ..+.+|.+.|.++.| ++++|++|+.|++|+|||+.++....
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~-- 180 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL-- 180 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE--
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceee--
Confidence 4799999999999999887643 346789999999987 46799999999999999998665432
Q ss_pred cccccCCCceeeeecCCCccccCCCceEEEEEeCCCC-EEEEEecCCeEEEEEccCCccccc------------------
Q 038537 66 KVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEG-LLYTGSFDKTVKAWRVLDKRCTCV------------------ 126 (358)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~------------------ 126 (358)
.+.+|...|.+++|+|++. +|++|+.|++|++||+.+++....
T Consensus 181 ------------------~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 181 ------------------AGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL 242 (393)
T ss_dssp ------------------EEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred ------------------eecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence 2357888999999999874 799999999999999987652110
Q ss_pred -----ccccccccCeEEEEEc-CCCCEEEEEeCCCcEEEEEceecCCcceeeee--------------ecccCCceeEEE
Q 038537 127 -----DSFVAHESNVNAIVVN-QDDGFVFTCSSDGSVKIWRRVYRENSHTLTMT--------------LKFQQSSVNALA 186 (358)
Q Consensus 127 -----~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--------------~~~~~~~i~~~~ 186 (358)
....+|...+.++.|. |++..+++++.|+.+++||+..+.....+... ............
T Consensus 243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (393)
T 4gq1_A 243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGAC 322 (393)
T ss_dssp GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCE
T ss_pred cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEE
Confidence 1123577788999987 79999999999999999999765433222110 000112233344
Q ss_pred EeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEeeeCCEEEEeeCCCeEEEEEcC
Q 038537 187 LSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRA 255 (358)
Q Consensus 187 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~ 255 (358)
+.|..++.++++|+.||.|++||+.++.. .....+|...| ++++|+|++||+++.+| +.+|.+.
T Consensus 323 ~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~----~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 323 PHPRYMDYFATAHSQHGLIQLINTYEKDS----NSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ECSSCTTEEEEEETTTTEEEEEETTCTTC----CEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EccCCCCEEEEEECCCCEEEEEECCCCcE----EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 55544566778889999999999987433 22344555556 56678899999998777 6666543
No 124
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.4e-30 Score=221.73 Aligned_cols=239 Identities=10% Similarity=0.106 Sum_probs=183.8
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeeccc-----ceEEEEe--cCCEEEEEeCCceEEEEecccccccccc--cccccC
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHG-----EVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTK--KVTTLP 71 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~-----~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~--~~~~~~ 71 (358)
+||+++.||.|++||..+ ++..+. |.. .|.+++| +|++|++|+.||+|+|||+.++...... .....
T Consensus 99 ~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti- 174 (588)
T 2j04_A 99 WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSI- 174 (588)
T ss_dssp CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEE-
T ss_pred EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeee-
Confidence 589999999999999654 556666 665 4888876 7889999999999999999876431100 00000
Q ss_pred CCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccc-ccccc-cccccCeEEEEEcCCCCEEE
Q 038537 72 RRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCT-CVDSF-VAHESNVNAIVVNQDDGFVF 149 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~ 149 (358)
.....+|.+.|.+++|+|+| +++++.|++|++||+.++... ....+ .+|...|.+++|+ ++.++
T Consensus 175 ----------~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LA 240 (588)
T 2j04_A 175 ----------RLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVV 240 (588)
T ss_dssp ----------ECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEE
T ss_pred ----------ecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEE
Confidence 00115788999999999999 888999999999999887621 12345 3688899999999 68888
Q ss_pred EEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEE--eecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccc
Q 038537 150 TCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL--SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC 227 (358)
Q Consensus 150 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 227 (358)
+++ ++.|++||+..+ .......+|...+..+++ +| ++..+++++.||+ ++|....
T Consensus 241 Sa~-~~tIkLWd~~~~----~~~~~~~gh~~~V~~va~~~s~--d~~~La~a~edG~-klw~~d~--------------- 297 (588)
T 2j04_A 241 LTC-PGYVHKIDLKNY----SISSLKTGSLENFHIIPLNHEK--ESTILLMSNKTSY-KVLLEDE--------------- 297 (588)
T ss_dssp EEC-SSEEEEEETTTT----EEEEEECSCCSCCCEEEETTCS--SCEEEEECSSCEE-EEEESSS---------------
T ss_pred EEe-CCeEEEEECCCC----eEEEEEcCCCceEEEEEeeeCC--CCCEEEEEcCCCC-EEEeecc---------------
Confidence 887 699999998533 232222269999999999 87 9999999999999 9998761
Q ss_pred ceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccC
Q 038537 228 FAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSL 297 (358)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~ 297 (358)
..++|++..+++. |+++++|+...+. +..+.+ ...|.+++|+|+ |+.+|+++.
T Consensus 298 ---~~~spd~~l~a~~--d~~v~lW~~~g~~-----l~~~~~-~~~I~~va~SPd------G~~lA~~~~ 350 (588)
T 2j04_A 298 ---LHVTADNIIAPYL--EKKFKKWSTIWNE-----FNNYET-TLVIHGISLSPD------GYSIAIVYD 350 (588)
T ss_dssp ---EEEECCCSSHHHH--HHHHHHTTTTTTS-----SSSSCC-EEEEEEEEECTT------SSEEEEEEE
T ss_pred ---EEECCCceEEEEc--CCEEEEEECCCCc-----eeeecc-ceEEEEEEECCC------CCEEEEEEe
Confidence 3478888777775 9999999986652 334444 778999999999 889998864
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.2e-27 Score=206.64 Aligned_cols=266 Identities=11% Similarity=0.042 Sum_probs=193.2
Q ss_pred eeeCCCcEEEEe--CCCc--eeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 4 TGSSSTRIRVWR--QPDC--VERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 4 tg~~dg~v~vw~--~~~~--~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
+++.++.++||. ..++ +.+..+..+.. +.++.+ ++.++++++.++.|++||+.+++.......
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------- 162 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKTGFQ-PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPP---------- 162 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEECSSC-BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCC----------
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcCCCC-ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCc----------
Confidence 445566445554 4334 55555555543 335555 456778888899999999998766532221
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEe-CCCc
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCS-SDGS 156 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~ 156 (358)
..+.+|...|.+++|+|++.++++++.|+.|++||+++++ .+..+..|...+.+++|+|+++.+++++ .|+.
T Consensus 163 -----~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 235 (433)
T 3bws_A 163 -----EKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA--YKATVDLTGKWSKILLYDPIRDLVYCSNWISED 235 (433)
T ss_dssp -----HHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC--EEEEEECSSSSEEEEEEETTTTEEEEEETTTTE
T ss_pred -----ccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce--EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCc
Confidence 1235788999999999999999999999999999998877 6667778889999999999999885554 7999
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEee--------cCCcEEEEEccCCcCCccccceeecccc
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS--------SDGSINFWEKDKMSGGFNHGGFLQGHCF 228 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--------~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 228 (358)
|++||+++++. ...+.. ...+.+++++| +++.+++++ .||.|++||+++.+..... ......
T Consensus 236 i~~~d~~~~~~----~~~~~~-~~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~ 305 (433)
T 3bws_A 236 ISVIDRKTKLE----IRKTDK-IGLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI---GPPGNK 305 (433)
T ss_dssp EEEEETTTTEE----EEECCC-CSEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE---EEEECE
T ss_pred EEEEECCCCcE----EEEecC-CCCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec---cCCCCc
Confidence 99999965432 222222 45689999998 888998888 4889999999874321111 111122
Q ss_pred eeEEEeeeCC-EEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccC----------
Q 038537 229 AVLCLVAIEK-LIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSL---------- 297 (358)
Q Consensus 229 ~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~---------- 297 (358)
...+++++++ ++++++.|+.|++||+.++ +.+..+. +...+.+++|+|+ +++|++++.
T Consensus 306 ~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~----~~~~~~~-~~~~~~~~~~s~d------g~~l~~~~~~~~~~~~~~~ 374 (433)
T 3bws_A 306 RHIVSGNTENKIYVSDMCCSKIEVYDLKEK----KVQKSIP-VFDKPNTIALSPD------GKYLYVSCRGPNHPTEGYL 374 (433)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEETTTT----EEEEEEE-CSSSEEEEEECTT------SSEEEEEECCCCCTTTCTT
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEECCCC----cEEEEec-CCCCCCeEEEcCC------CCEEEEEecCCCccccccc
Confidence 3356677786 4566789999999999987 4444553 6678999999999 777777665
Q ss_pred -----CCcEEEEEeee
Q 038537 298 -----DQTFKVWRVKV 308 (358)
Q Consensus 298 -----dg~v~iw~~~~ 308 (358)
||.|++||+..
T Consensus 375 ~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 375 KKGLVLGKVYVIDTTT 390 (433)
T ss_dssp SCCSSCCEEEEEETTT
T ss_pred cccccceEEEEEECCC
Confidence 57999999874
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.7e-26 Score=198.38 Aligned_cols=267 Identities=13% Similarity=0.087 Sum_probs=192.0
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEE-EEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLF-TTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+++++.|+.|++||+.+++.+..+..+. .+.++.+ ++++|+ +++.++.|++||+.+++....
T Consensus 47 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~-------------- 111 (391)
T 1l0q_A 47 YVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT-------------- 111 (391)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE--------------
T ss_pred EEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE--------------
Confidence 4677899999999999999988887666 7888877 466665 555679999999988765432
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEE-EEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEE-EEEeCCCc
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLL-YTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFV-FTCSSDGS 156 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~ 156 (358)
..+...+.+++|+|+++.| ++++.++.|++||+.+++ .+..+..+ ..+.+++|+|+++.+ ++++.++.
T Consensus 112 -------~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~ 181 (391)
T 1l0q_A 112 -------VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA--VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMS 181 (391)
T ss_dssp -------EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEECC-SSEEEEEECTTSSEEEEEETTTTE
T ss_pred -------EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEecC-CCcceEEECCCCCEEEEEeCCCCE
Confidence 1233468999999999977 688889999999999887 45555444 567999999999887 56778899
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEee---cCCcEEEEEccCCcCCccccceeecccc-eeEE
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS---SDGSINFWEKDKMSGGFNHGGFLQGHCF-AVLC 232 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~ 232 (358)
|++||+++++.. .... +...+.+++|+| ++.++++++ .++.|++||+.+.. ....+..+.. ...+
T Consensus 182 v~~~d~~~~~~~----~~~~-~~~~~~~~~~~~--~g~~l~~~~~~~~~~~v~~~d~~~~~----~~~~~~~~~~~~~~~ 250 (391)
T 1l0q_A 182 ISVIDTVTNSVI----DTVK-VEAAPSGIAVNP--EGTKAYVTNVDKYFNTVSMIDTGTNK----ITARIPVGPDPAGIA 250 (391)
T ss_dssp EEEEETTTTEEE----EEEE-CSSEEEEEEECT--TSSEEEEEEECSSCCEEEEEETTTTE----EEEEEECCSSEEEEE
T ss_pred EEEEECCCCeEE----EEEe-cCCCccceEECC--CCCEEEEEecCcCCCcEEEEECCCCe----EEEEEecCCCccEEE
Confidence 999999655322 2222 456788999998 898888888 68999999998743 2222333332 2356
Q ss_pred EeeeCCEE-EEeeCCCeEEEEEcCCCceeeeeeeeecCcccceE---EEE------------eeccc--ceeeeC--eEE
Q 038537 233 LVAIEKLI-FSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVR---CLA------------ASLEM--EKVVMG--FLV 292 (358)
Q Consensus 233 ~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~---~i~------------~~~~~--~~~~~~--~~l 292 (358)
++++++++ ++++.|+.|++||+.++ +.+..+..|..+.. .+. |+.+. ...... ..+
T Consensus 251 ~s~dg~~l~~s~~~d~~v~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~ 326 (391)
T 1l0q_A 251 VTPDGKKVYVALSFXNTVSVIDTATN----TITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQF 326 (391)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTT----EEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEE
T ss_pred EccCCCEEEEEcCCCCEEEEEECCCC----cEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEE
Confidence 77888877 67788999999999998 44555555544321 122 22210 000001 457
Q ss_pred EEccCCCcEEEEEeee
Q 038537 293 YSSSLDQTFKVWRVKV 308 (358)
Q Consensus 293 ~s~~~dg~v~iw~~~~ 308 (358)
...+.|..+++|++..
T Consensus 327 ~~~~~~~~~~~W~~~~ 342 (391)
T 1l0q_A 327 TDLSKDATEWKWDFGD 342 (391)
T ss_dssp EECCBSCSEEEEECSS
T ss_pred EeCCCCceEEEEECCC
Confidence 7888899999999864
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=5.9e-27 Score=208.18 Aligned_cols=312 Identities=10% Similarity=0.070 Sum_probs=215.4
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEE--EecCCEEEEEeCCceEEEEec--ccccccccccccccCCCcee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAI--LAHDNMLFTTNKDCKIRIWNF--TVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i--~~~~~~l~s~~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~ 76 (358)
++++++.|++|.+||..+++.+..+..+.. +..+ ++++++|++++.|++|.+||+ .+.+.+..
T Consensus 151 ~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~------------ 217 (543)
T 1nir_A 151 FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE------------ 217 (543)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE------------
T ss_pred EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE------------
Confidence 367888999999999999999998884333 5555 457889999999999999999 55543321
Q ss_pred eeecCCCccccCCCceEEEEEeC----CCCEEEEEec-CCeEEEEEccCCcccccccccc----------c-ccCeEEEE
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFYH----AEGLLYTGSF-DKTVKAWRVLDKRCTCVDSFVA----------H-ESNVNAIV 140 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~----------~-~~~v~~~~ 140 (358)
+. +...+..++|+| +|++|++++. +++|.+||..+.+ ++..+.. | ...+..+.
T Consensus 218 --------i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~--~~~~i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 218 --------IK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp --------EE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEE
T ss_pred --------Ee-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc--cceeecccCcccCccccccCCceEEEE
Confidence 12 344579999999 9999998874 8999999998877 4444432 2 23789999
Q ss_pred EcCCCC-EEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEe-ecCCcEEEEEccCCcCCcc
Q 038537 141 VNQDDG-FVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSG-SSDGSINFWEKDKMSGGFN 218 (358)
Q Consensus 141 ~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~ 218 (358)
++|++. ++++...++.|.+||..+.+.... ... .+...+..+.|+| ++++++++ ..+++|.+||+.+++....
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~--~~i-~~~~~~~~~~~sp--dg~~l~va~~~~~~v~v~D~~tg~l~~~ 361 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTV--TSI-GAAPFLHDGGWDS--SHRYFMTAANNSNKVAVIDSKDRRLSAL 361 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSSSCEE--EEE-ECCSSCCCEEECT--TSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCCccee--EEe-ccCcCccCceECC--CCCEEEEEecCCCeEEEEECCCCeEEEe
Confidence 999765 456667789999999876543321 111 2456788899998 88876655 4589999999988432222
Q ss_pred ccceeecccceeEE-Eeee-CCEEEEee-CCCeEEEEEcCCCc---eeeeeeeeecCcccceEEEEeecccceeeeCeEE
Q 038537 219 HGGFLQGHCFAVLC-LVAI-EKLIFSGS-EDTTIRVWRRAEGG---CYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLV 292 (358)
Q Consensus 219 ~~~~~~~~~~~~~~-~~~~-~~~l~~~~-~dg~i~iwd~~~~~---~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l 292 (358)
.......|...... ++|+ +.+++++. .|++|.+||+.+.. ...+.+.++.+|.+.+..++++|+ +++|
T Consensus 362 i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pd------g~~l 435 (543)
T 1nir_A 362 VDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK------SSHL 435 (543)
T ss_dssp EECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT------CCEE
T ss_pred eccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCC------CCcE
Confidence 11111125433333 3565 56677765 68999999998821 112678899999888999999999 8899
Q ss_pred EEcc-------CCCcEEEEEeeeCCCCcceeecccc---cCCCCccceeeecccCCCcccccccch
Q 038537 293 YSSS-------LDQTFKVWRVKVMPDQEKTMCLDYS---DYHSNSKTTTTKMDYEMSPVLSPSWVE 348 (358)
Q Consensus 293 ~s~~-------~dg~v~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~s~~W~~ 348 (358)
++++ .+++|.+||+.+.....+...+... ..+ ........+......+....|++
T Consensus 436 ~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~g~~~~~s~~~~ 500 (543)
T 1nir_A 436 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG-AKRVVQPEYNKRGDEVWFSVWNG 500 (543)
T ss_dssp EECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS-CCEEEEEEECSSSSEEEEEEECC
T ss_pred EEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCC-CCceEeccCCCCCCEEEEEeecC
Confidence 9987 2779999999976543222212111 111 12222333444455676666754
No 128
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.95 E-value=2.7e-25 Score=187.28 Aligned_cols=277 Identities=11% Similarity=0.173 Sum_probs=181.4
Q ss_pred EEeeeCCCcEEEEeCC-Cc--eeeeeeeecccceEEEEe--cCCEEEEEeCC-ceEEEEecc--cccccccccccccCCC
Q 038537 2 VFTGSSSTRIRVWRQP-DC--VERGFIKARHGEVRAILA--HDNMLFTTNKD-CKIRIWNFT--VSDNFRTKKVTTLPRR 73 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~-~~--~~~~~~~~h~~~v~~i~~--~~~~l~s~~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~ 73 (358)
+++++.|+.|++|++. ++ +.+.. ..|...+.++.+ ++++|++++.+ +.|.+|+++ ++......
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-------- 78 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA-------- 78 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE--------
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc--------
Confidence 4455789999999985 33 22333 345666666655 67888888876 999999997 33321110
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec-CCeEEEEEccCCcc-cccccccccccCeEEEEEcCCCCEEEEE
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF-DKTVKAWRVLDKRC-TCVDSFVAHESNVNAIVVNQDDGFVFTC 151 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 151 (358)
.+..+ ..+..++|+|++++|++++. ++.|.+||+.++.. .....+. ....+.+++|+|+++.++++
T Consensus 79 ----------~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~ 146 (343)
T 1ri6_A 79 ----------ESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVP 146 (343)
T ss_dssp ----------EEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEE
T ss_pred ----------ccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEe
Confidence 11122 26889999999998876665 88999999943221 1333333 33468899999999988888
Q ss_pred e-CCCcEEEEEceecCCcceee--eeecccCCceeEEEEeecCCCcEEEEe-ecCCcEEEEEccCCcCCccccceee---
Q 038537 152 S-SDGSVKIWRRVYRENSHTLT--MTLKFQQSSVNALALSSFFDNYFLYSG-SSDGSINFWEKDKMSGGFNHGGFLQ--- 224 (358)
Q Consensus 152 ~-~dg~i~~wd~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~--- 224 (358)
+ .++.|.+||+.+........ .........+..++|+| ++++++++ ..++.|.+|++..............
T Consensus 147 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~ 224 (343)
T 1ri6_A 147 ALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP--NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 224 (343)
T ss_dssp EGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT--TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSC
T ss_pred cCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC--CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccC
Confidence 7 89999999997522221111 11112245778899998 88866555 4789999999964222221111111
Q ss_pred -cc----cceeEEEeeeCCEEE-EeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEcc-C
Q 038537 225 -GH----CFAVLCLVAIEKLIF-SGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSS-L 297 (358)
Q Consensus 225 -~~----~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~-~ 297 (358)
++ .....++++++++|+ ++..++.|++||+.......+.+..+..+.. +.+++|+|+ +++|++++ .
T Consensus 225 ~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~d------g~~l~~~~~~ 297 (343)
T 1ri6_A 225 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHS------GKYLIAAGQK 297 (343)
T ss_dssp TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTT------SSEEEEECTT
T ss_pred ccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCC------CCEEEEecCC
Confidence 11 111367788888777 4557999999999832111244555555544 889999999 77666666 7
Q ss_pred CCcEEEEEeee
Q 038537 298 DQTFKVWRVKV 308 (358)
Q Consensus 298 dg~v~iw~~~~ 308 (358)
|+.|.+|+++.
T Consensus 298 ~~~v~v~~~d~ 308 (343)
T 1ri6_A 298 SHHISVYEIVG 308 (343)
T ss_dssp TCEEEEEEEET
T ss_pred CCeEEEEEEcC
Confidence 89999998874
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=3.5e-25 Score=191.12 Aligned_cols=233 Identities=13% Similarity=-0.015 Sum_probs=179.6
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCc---eEEEEecccccccccccccccCCCceeeeecCCC
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDC---KIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSN 83 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
+.|++||+.. .....+..|...+.++.+ ++++|++++.++ .|++||+.+++..
T Consensus 159 ~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~--------------------- 216 (415)
T 2hqs_A 159 YELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------------------- 216 (415)
T ss_dssp EEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE---------------------
T ss_pred ceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE---------------------
Confidence 7999999974 456778889999998876 678999999875 9999999877543
Q ss_pred ccccCCCceEEEEEeCCCCEEE-EEecCC--eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-CC--cE
Q 038537 84 TQQQHRDCVSCMAFYHAEGLLY-TGSFDK--TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DG--SV 157 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i 157 (358)
.+..|...+.+++|+|+|+.|+ +++.++ .|++||+.+++ ...+..|...+.+++|+|+++.|++++. ++ .|
T Consensus 217 ~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 217 QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC---EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC---EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence 1245677899999999999887 666655 49999998876 3456678889999999999999988876 45 57
Q ss_pred EEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC---CcEEEEEccCCcCCccccceeecccceeEEEe
Q 038537 158 KIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD---GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV 234 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
.+||+.+++. ..+..+...+..++|+| ++++|++++.+ ..|++||+.+.... .+ .........+++
T Consensus 294 ~~~d~~~~~~-----~~l~~~~~~~~~~~~sp--dG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l---~~~~~~~~~~~s 362 (415)
T 2hqs_A 294 YKVNINGGAP-----QRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL---SSTFLDETPSLA 362 (415)
T ss_dssp EEEETTSSCC-----EECCCSSSEEEEEEECT--TSSEEEEEEECSSCEEEEEEETTTCCEE-EC---CCSSSCEEEEEC
T ss_pred EEEECCCCCE-----EEEecCCCcccCeEECC--CCCEEEEEECcCCceEEEEEECCCCCEE-Ee---cCCCCcCCeEEc
Confidence 7778765431 22333566788999998 99999988764 58999999874321 11 111234456788
Q ss_pred eeCCEEEEeeCCC---eEEEEEcCCCceeeeeeeeecCcccceEEEEeecc
Q 038537 235 AIEKLIFSGSEDT---TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 235 ~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
|++++|++++.++ .|++||+..+ ....+.+|.+.|.+++|+|.
T Consensus 363 pdg~~l~~~s~~~~~~~l~~~d~~g~-----~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 363 PNGTMVIYSSSQGMGSVLNLVSTDGR-----FKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp TTSSEEEEEEEETTEEEEEEEETTSC-----CEEECCCSSSEEEEEEECCC
T ss_pred CCCCEEEEEEcCCCccEEEEEECCCC-----cEEEeeCCCCCCcCCccccc
Confidence 8999999888777 7999999754 46677889999999999997
No 130
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=5.3e-26 Score=184.71 Aligned_cols=177 Identities=16% Similarity=0.124 Sum_probs=132.7
Q ss_pred CCCcEEEEeC-CCceeeeeeeecccceEEE--Ee---cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 7 SSTRIRVWRQ-PDCVERGFIKARHGEVRAI--LA---HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 7 ~dg~v~vw~~-~~~~~~~~~~~h~~~v~~i--~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
.|+.|++|++ ++++.+..+.+|...+..+ ++ ++..|++|+.|++|+|||+.+++.+......
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~------------ 222 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID------------ 222 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC------------
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC------------
Confidence 5999999999 5688888888888776655 44 4689999999999999999998876543210
Q ss_pred CCCccccCCCceEEEEEeCCCCEE------------EEEecCCeEEEEEccCCcccccccc-----cccccCeEEEEEcC
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGLL------------YTGSFDKTVKAWRVLDKRCTCVDSF-----VAHESNVNAIVVNQ 143 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~v~~~~~~~ 143 (358)
..+...+.+++|+|++.++ ++|+.|++|++||..+++ .+..+ .+|...+.+..++
T Consensus 223 -----~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk--~l~v~~~~~p~Gh~~~~lsg~~s- 294 (356)
T 2w18_A 223 -----DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL--SVGVMLYCLPPGQAGRFLEGDVK- 294 (356)
T ss_dssp -----C---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE--EEEEEEECCCTTCCCCEEEEEEE-
T ss_pred -----CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE--EEEEEEeeccCCCcceeEccccC-
Confidence 1123468888999999876 568899999999999887 33332 3566555544444
Q ss_pred CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCcee-EEEEeecCCCcEEEEeecCCcEEEEEc
Q 038537 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVN-ALALSSFFDNYFLYSGSSDGSINFWEK 210 (358)
Q Consensus 144 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~~dg~i~i~d~ 210 (358)
+..+++++.|++|++||+.+++ ....+.+|...+. .++|+| ++++|++|+.|++|+|||+
T Consensus 295 -g~~lASgS~DgTIkIWDl~tGk----~l~tL~gH~~~vvs~vafSP--DG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 295 -DHCAAAILTSGTIAIWDLLLGQ----CTALLPPVSDQHWSFVKWSG--TDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -TTEEEEEETTSCEEEEETTTCS----EEEEECCC--CCCCEEEECS--SSSEEEEECTTSCEEEEEE
T ss_pred -CCEEEEEcCCCcEEEEECCCCc----EEEEecCCCCCeEEEEEECC--CCCEEEEEECCCcEEEecC
Confidence 7899999999999999996655 3445566766655 589998 9999999999999999985
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.94 E-value=1.5e-24 Score=181.87 Aligned_cols=272 Identities=8% Similarity=0.034 Sum_probs=185.5
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeC-CceEEEEecccccc-cccccccccCCCceee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNK-DCKIRIWNFTVSDN-FRTKKVTTLPRRSSFL 77 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~-dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~ 77 (358)
+++++.++.|++||..+++....+..+...+ .+.+ +++++++++. ++.|.+||+.+++. ..
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~-------------- 77 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV-------------- 77 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE--------------
T ss_pred EEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE--------------
Confidence 6788889999999999999888877666555 6655 6776666655 89999999987764 21
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEecCC---eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEE-eC
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDK---TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC-SS 153 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~ 153 (358)
.+..+..+..+++|+|++++|+++..++ .|.+||+.+++ .+..+. ......+++|+|++++++++ ..
T Consensus 78 ------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~--~~~~~~-~~~~~~~~~~spdg~~l~~~~~~ 148 (331)
T 3u4y_A 78 ------AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNK--FISTIP-IPYDAVGIAISPNGNGLILIDRS 148 (331)
T ss_dssp ------EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTE--EEEEEE-CCTTEEEEEECTTSSCEEEEEET
T ss_pred ------ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCC--eEEEEE-CCCCccceEECCCCCEEEEEecC
Confidence 1134455555599999999999665553 89999998887 444443 34557999999999855554 55
Q ss_pred CCc-EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEE-EeecCCcEEEEEccCCcCCccccceee-ccccee
Q 038537 154 DGS-VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLY-SGSSDGSINFWEKDKMSGGFNHGGFLQ-GHCFAV 230 (358)
Q Consensus 154 dg~-i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~ 230 (358)
++. |.+|++...................+..++|+| ++++++ ++..++.|.+||+.+...... ...+. +....-
T Consensus 149 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~v~~~~~~~v~v~d~~~~~~~~~-~~~~~~~~~~~~ 225 (331)
T 3u4y_A 149 SANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP--DGNFAFVANLIGNSIGILETQNPENITL-LNAVGTNNLPGT 225 (331)
T ss_dssp TTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT--TSSEEEEEETTTTEEEEEECSSTTSCEE-EEEEECSSCCCC
T ss_pred CCceEEEEEECCCCcEeecCCccccCCCCccceEECC--CCCEEEEEeCCCCeEEEEECCCCcccce-eeeccCCCCCce
Confidence 688 999998644322221111112345678999998 888555 455689999999987443100 12222 222334
Q ss_pred EEEeeeCCEEEEe-eCCCeEEEEEcCCCceeeeeeeeecCc----cc---ceEEEEeecccceeeeCeEE-EEccCCCcE
Q 038537 231 LCLVAIEKLIFSG-SEDTTIRVWRRAEGGCYHECLAVLDGH----RG---PVRCLAASLEMEKVVMGFLV-YSSSLDQTF 301 (358)
Q Consensus 231 ~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h----~~---~v~~i~~~~~~~~~~~~~~l-~s~~~dg~v 301 (358)
.+++|++++++++ ..++.|.+||+.+++. +.+..+..+ .. ....++|+|+ +++| +++..++.|
T Consensus 226 ~~~spdg~~l~v~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~spd------g~~l~v~~~~~~~v 297 (331)
T 3u4y_A 226 IVVSRDGSTVYVLTESTVDVFNFNQLSGTL--SFVKSFGHGLLIDPRPLFGANQMALNKT------ETKLFISANISREL 297 (331)
T ss_dssp EEECTTSSEEEEECSSEEEEEEEETTTTEE--EEEEEEECCCCCCCGGGTTCCCEEECTT------SSEEEEEETTTTEE
T ss_pred EEECCCCCEEEEEEcCCCEEEEEECCCCce--eeecccccccccCCCCcccccceEECCC------CCEEEEecCCCCcE
Confidence 7788999966654 4678899999998854 112222222 22 2356899999 6665 556667799
Q ss_pred EEEEeee
Q 038537 302 KVWRVKV 308 (358)
Q Consensus 302 ~iw~~~~ 308 (358)
.+||+..
T Consensus 298 ~v~d~~~ 304 (331)
T 3u4y_A 298 KVFTISG 304 (331)
T ss_dssp EEEETTS
T ss_pred EEEEecC
Confidence 9999974
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.94 E-value=1.1e-24 Score=179.39 Aligned_cols=254 Identities=11% Similarity=0.033 Sum_probs=181.7
Q ss_pred eeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEeccc-ccccccccccccCCCceeeeec
Q 038537 4 TGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTV-SDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 4 tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
+++.|+.|++||+.+++.. .+..|...|.++.+ ++++|++++ ++.|.+||+.+ ++.....
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~--------------- 79 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD--------------- 79 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC---------------
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec---------------
Confidence 3467899999999988865 55668888998876 577888876 78999999987 5543211
Q ss_pred CCCccccC-CCceEEEEEeCCCCEEEEEe--cCCeEEEEEc--cCCcccccccccccccCeEEEEEcCCCCEEE-EEeCC
Q 038537 81 KSNTQQQH-RDCVSCMAFYHAEGLLYTGS--FDKTVKAWRV--LDKRCTCVDSFVAHESNVNAIVVNQDDGFVF-TCSSD 154 (358)
Q Consensus 81 ~~~~~~~h-~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d 154 (358)
..+ ...+.+++|+|++++|++++ .++...+|.+ .++. ...+.. ...+..++|+|+++.|+ ++..+
T Consensus 80 -----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~---~~~~~~-~~~~~~~~~spdg~~l~~~~~~~ 150 (297)
T 2ojh_A 80 -----TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT---PRLMTK-NLPSYWHGWSPDGKSFTYCGIRD 150 (297)
T ss_dssp -----CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC---CEECCS-SSSEEEEEECTTSSEEEEEEEET
T ss_pred -----cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc---eEEeec-CCCccceEECCCCCEEEEEECCC
Confidence 223 46789999999999999998 3345555554 4443 233333 33589999999999877 77889
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEee-cCCcEEEEEccCCcCCccccceeeccccee--E
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS-SDGSINFWEKDKMSGGFNHGGFLQGHCFAV--L 231 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~ 231 (358)
+.+.+|++...... ...+..+...+.+++|+| +++.|+.++ .++.+.+|++....... ..+..+...+ .
T Consensus 151 ~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~ 222 (297)
T 2ojh_A 151 QVFDIYSMDIDSGV---ETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSV---ERITDSAYGDWFP 222 (297)
T ss_dssp TEEEEEEEETTTCC---EEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCE---EECCCCSEEEEEE
T ss_pred CceEEEEEECCCCc---ceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCc---EEEecCCcccCCe
Confidence 99999997543221 233445677899999998 888877666 58999999987322211 2233333333 5
Q ss_pred EEeeeCCEEEEeeCC-----------CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCC
Q 038537 232 CLVAIEKLIFSGSED-----------TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQ 299 (358)
Q Consensus 232 ~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg 299 (358)
++++++++|++++.+ +.|++||+.+++. ..+..+.+|...+.+++|+|+ +++|++++.|.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~~spd------g~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV--ETLFDLFGGQGTMNSPNWSPD------GDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC--EEEEEEEESTTTSCSCCBCTT------SSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc--eeeeccCCCCcccccceECCC------CCEEEEEEecc
Confidence 667889999888765 5699999988753 345555578889999999999 77887776653
No 133
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.7e-23 Score=185.99 Aligned_cols=288 Identities=13% Similarity=0.068 Sum_probs=196.3
Q ss_pred CEEeeeCCCcEEEEeC--CCceeeeeeeecccceEEEE--e----cCCEEEEEe-CCceEEEEecccccccccccccccC
Q 038537 1 MVFTGSSSTRIRVWRQ--PDCVERGFIKARHGEVRAIL--A----HDNMLFTTN-KDCKIRIWNFTVSDNFRTKKVTTLP 71 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~--~~~~~~~~~~~h~~~v~~i~--~----~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~ 71 (358)
+|++++.|+.|++||+ .+++.+..+..+. .+..+. + +++++++++ .+++|.+||..+.+.+.........
T Consensus 192 ~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~-~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~ 270 (543)
T 1nir_A 192 YLLVIGRDARIDMIDLWAKEPTKVAEIKIGI-EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 270 (543)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC
T ss_pred EEEEECCCCeEEEEECcCCCCcEEEEEecCC-CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcc
Confidence 4788999999999999 8888888887543 445554 4 677888887 4899999999887766543321100
Q ss_pred CCceeeeecCCCccccC-CCceEEEEEeCCCC-EEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEE
Q 038537 72 RRSSFLSFSKSNTQQQH-RDCVSCMAFYHAEG-LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVF 149 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 149 (358)
.. ....| ...+..+.++|++. ++++...++.|.+||+.+.+...+..+ .+...+.++.|+|++++++
T Consensus 271 ~~----------~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~ 339 (543)
T 1nir_A 271 VD----------TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFM 339 (543)
T ss_dssp SS----------SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEE
T ss_pred cC----------ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEE
Confidence 00 00113 33789999999766 556677889999999987652222233 3566788999999999877
Q ss_pred EEe-CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCC-CcEEEEee-cCCcEEEEEccCCcC---Ccccccee
Q 038537 150 TCS-SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFD-NYFLYSGS-SDGSINFWEKDKMSG---GFNHGGFL 223 (358)
Q Consensus 150 ~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~~~~---~~~~~~~~ 223 (358)
+++ .+++|.+||+.+++....+......|......+ ++| + +..++++. .|++|.+||+.+... ..+....+
T Consensus 340 va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p--~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l 416 (543)
T 1nir_A 340 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHP--KYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL 416 (543)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EET--TTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred EEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCC--CCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE
Confidence 655 589999999976654333221111243333232 344 5 56666665 589999999987221 13445556
Q ss_pred ecccce--eEEEeeeCCEEEEee-------CCCeEEEEEcCCCceeeeeeee-----ecCcccceEEEEeecccceeeeC
Q 038537 224 QGHCFA--VLCLVAIEKLIFSGS-------EDTTIRVWRRAEGGCYHECLAV-----LDGHRGPVRCLAASLEMEKVVMG 289 (358)
Q Consensus 224 ~~~~~~--~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~-----~~~h~~~v~~i~~~~~~~~~~~~ 289 (358)
..+... .+.++|++++|++++ .+++|.+||+.+.+...+.+.. +..+...+..+.|+|+ |
T Consensus 417 ~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------g 490 (543)
T 1nir_A 417 QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR------G 490 (543)
T ss_dssp ECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSS------S
T ss_pred EcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCC------C
Confidence 665433 467889999999987 3779999999998643222111 2456788999999999 6
Q ss_pred eEEEEc-----cCCCcEEEEEeeeC
Q 038537 290 FLVYSS-----SLDQTFKVWRVKVM 309 (358)
Q Consensus 290 ~~l~s~-----~~dg~v~iw~~~~~ 309 (358)
+.|+.+ +.|+.|.|||..+.
T Consensus 491 ~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 491 DEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CEEEEEeecCCCCCCeEEEEECCCc
Confidence 666654 34799999998843
No 134
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.92 E-value=2.6e-22 Score=169.43 Aligned_cols=274 Identities=14% Similarity=0.142 Sum_probs=175.3
Q ss_pred CCCcEEEEeC--CCceeee-eeeecccceEEEE--ecCCEEEEEeC---CceEEEEecccccccccccccccCCCceeee
Q 038537 7 SSTRIRVWRQ--PDCVERG-FIKARHGEVRAIL--AHDNMLFTTNK---DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 7 ~dg~v~vw~~--~~~~~~~-~~~~h~~~v~~i~--~~~~~l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
.++.|.+|++ .+++... ....+......++ ++++ |++++. ++.|.+|++.++......
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~------------- 79 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN------------- 79 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE-------------
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee-------------
Confidence 3556777765 4555433 2333444455454 4666 555554 689999999765421110
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEe-cCCeEEEEEcc-CCcccccccccc---------cccCeEEEEEcCCCCE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGS-FDKTVKAWRVL-DKRCTCVDSFVA---------HESNVNAIVVNQDDGF 147 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~-~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~ 147 (358)
.+..+...+..++|+|++++|++++ .++.|.+|++. ++....+..+.. +...+.+++|+|++++
T Consensus 80 -----~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l 154 (347)
T 3hfq_A 80 -----TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRL 154 (347)
T ss_dssp -----EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCE
T ss_pred -----eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcE
Confidence 1134566788999999999888887 67999999995 333223332221 1234889999999996
Q ss_pred EEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEE-eecCCcEEEEEccCCcCCccccceeec-
Q 038537 148 VFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYS-GSSDGSINFWEKDKMSGGFNHGGFLQG- 225 (358)
Q Consensus 148 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~- 225 (358)
+++...++.|.+|++...................+..++|+| +++++++ +..++.|.+|++...............
T Consensus 155 ~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 232 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP--DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI 232 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred EEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC--CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec
Confidence 666667889999999732221111111111234677899998 8886555 566889999998752222211111111
Q ss_pred -------ccceeEEEeeeCCEEE-EeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccC
Q 038537 226 -------HCFAVLCLVAIEKLIF-SGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSL 297 (358)
Q Consensus 226 -------~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~ 297 (358)
....-.+++|++++|+ +...++.|.+|++.... ..+.+..+..+...+.+++|+|+ +++|++++.
T Consensus 233 ~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g-~~~~~~~~~~~~~~~~~~~~spd------g~~l~v~~~ 305 (347)
T 3hfq_A 233 PADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG-HLTLIQQISTEGDFPRDFDLDPT------EAFVVVVNQ 305 (347)
T ss_dssp CTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG-CEEEEEEEECSSSCCCEEEECTT------SSEEEEEET
T ss_pred CCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC-cEEEeEEEecCCCCcCeEEECCC------CCEEEEEEc
Confidence 1123367888998774 55568999999997321 12455666666677899999999 777766654
Q ss_pred -CCcEEEEEeee
Q 038537 298 -DQTFKVWRVKV 308 (358)
Q Consensus 298 -dg~v~iw~~~~ 308 (358)
++.|.+|+++.
T Consensus 306 ~~~~v~v~~~d~ 317 (347)
T 3hfq_A 306 NTDNATLYARDL 317 (347)
T ss_dssp TTTEEEEEEECT
T ss_pred CCCcEEEEEEeC
Confidence 58999998763
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.92 E-value=2.5e-23 Score=174.75 Aligned_cols=266 Identities=7% Similarity=0.015 Sum_probs=181.9
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeeccc--ceEEEE--ecCCEE-EEEeCCceEEEEecccccccccccccccCCCce
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHG--EVRAIL--AHDNML-FTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~--~v~~i~--~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
+|++++.++.|++||..+++.+..+..... .+..+. ++++.+ ++++.++.|.+||+.+++..........
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~----- 77 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP----- 77 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT-----
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc-----
Confidence 478999999999999999998887764331 344454 466655 5556688999999988765433221100
Q ss_pred eeeecCCCccccCCCceEEEEEeCCCCEEEEEe------------cCCeEEEEEccCCcccccccccccccCeEEEEEcC
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS------------FDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ 143 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~ 143 (358)
..|...+.+++|+|+++.|++++ .++.|.+||+.+++ ....+.. ...+.+++|+|
T Consensus 78 ----------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~~~~~~-~~~~~~~~~s~ 144 (337)
T 1pby_B 78 ----------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLS--RRKAFEA-PRQITMLAWAR 144 (337)
T ss_dssp ----------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEEEC-CSSCCCEEECT
T ss_pred ----------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCc--EEEEEeC-CCCcceeEECC
Confidence 01233567899999999988886 57999999998876 4444433 45678899999
Q ss_pred CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC--------------------
Q 038537 144 DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG-------------------- 203 (358)
Q Consensus 144 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg-------------------- 203 (358)
++++++++ ++.|.+||+.+++.. .....+. ....+.++| ++..++..+..+
T Consensus 145 dg~~l~~~--~~~i~~~d~~~~~~~----~~~~~~~-~~~~~~~s~--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (337)
T 1pby_B 145 DGSKLYGL--GRDLHVMDPEAGTLV----EDKPIQS-WEAETYAQP--DVLAVWNQHESSGVMATPFYTARKDIDPADPT 215 (337)
T ss_dssp TSSCEEEE--SSSEEEEETTTTEEE----EEECSTT-TTTTTBCCC--BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred CCCEEEEe--CCeEEEEECCCCcEe----eeeeccc-cCCCceeCC--CccEEeeeccCCCceeeeeecccccccccccc
Confidence 99988887 689999999655422 2222111 011225666 666555444322
Q ss_pred ----cEEEEEccCCcCCccccceeecccce--eEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEE
Q 038537 204 ----SINFWEKDKMSGGFNHGGFLQGHCFA--VLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCL 277 (358)
Q Consensus 204 ----~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i 277 (358)
.|.+||+.+.... ......+... -.++++++++++++ ++.|++||+.++ +.+..+..+ ..+.++
T Consensus 216 ~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~----~~~~~~~~~-~~~~~~ 285 (337)
T 1pby_B 216 AYRTGLLTMDLETGEMA---MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN----ASIKRVPLP-HSYYSV 285 (337)
T ss_dssp GEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT----EEEEEEECS-SCCCEE
T ss_pred ccccceEEEeCCCCCce---EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC----cCcceecCC-CceeeE
Confidence 4688998874322 1112223222 36778889999888 799999999987 344444433 457899
Q ss_pred EeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 278 AASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 278 ~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
+|+|+ +++|++++.++.|.+||+...
T Consensus 286 ~~s~d------g~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 286 NVSTD------GSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp EECTT------SCEEEEESBSSEEEEEETTTC
T ss_pred EECCC------CCEEEEEcCCCcEEEEECcCC
Confidence 99999 788888889999999998753
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=7.7e-23 Score=189.91 Aligned_cols=263 Identities=9% Similarity=0.019 Sum_probs=189.1
Q ss_pred EEeeeC-CC-----cEEEEeCCCceeeeeeeecccc------------------------eEEE--EecCCEEEEEeCCc
Q 038537 2 VFTGSS-ST-----RIRVWRQPDCVERGFIKARHGE------------------------VRAI--LAHDNMLFTTNKDC 49 (358)
Q Consensus 2 l~tg~~-dg-----~v~vw~~~~~~~~~~~~~h~~~------------------------v~~i--~~~~~~l~s~~~dg 49 (358)
|++++. || .|++||+.+++....+..+... +.++ ++++++|++++. +
T Consensus 51 la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~-~ 129 (741)
T 2ecf_A 51 VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG-G 129 (741)
T ss_dssp EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-T
T ss_pred EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-C
Confidence 677777 88 8999999998877776654332 5544 457889998886 8
Q ss_pred eEEEEecccc---cccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccc
Q 038537 50 KIRIWNFTVS---DNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCV 126 (358)
Q Consensus 50 ~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 126 (358)
.|++||+.++ ... .+..|...+.+++|+|+|+.|++++. +.|++||+.+++ ..
T Consensus 130 ~i~~~d~~~~~~~~~~---------------------~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~--~~ 185 (741)
T 2ecf_A 130 ELYLYDLKQEGKAAVR---------------------QLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGR--QM 185 (741)
T ss_dssp EEEEEESSSCSTTSCC---------------------BCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTE--EE
T ss_pred cEEEEECCCCCcceEE---------------------EcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCC--EE
Confidence 9999999876 321 22456778999999999999998874 689999998876 22
Q ss_pred ccccccccC----------------eEEEEEcCCCCEEEEEeCCC---------------------------------cE
Q 038537 127 DSFVAHESN----------------VNAIVVNQDDGFVFTCSSDG---------------------------------SV 157 (358)
Q Consensus 127 ~~~~~~~~~----------------v~~~~~~~~~~~l~~~~~dg---------------------------------~i 157 (358)
.....+... +..++|+|||+.|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 222222222 47899999999999988765 78
Q ss_pred EEEEcee-cCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-----CCcEEEEEccCCcCCccccceeeccc----
Q 038537 158 KIWRRVY-RENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-----DGSINFWEKDKMSGGFNHGGFLQGHC---- 227 (358)
Q Consensus 158 ~~wd~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~~~---- 227 (358)
++||+.+ ++... + .....+...+..++| | ++++|++++. +..|++||+.++... .....+.
T Consensus 266 ~~~d~~~~~~~~~-~-~~~~~~~~~~~~~~~-p--Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~~----~~~~~~~~~~~ 336 (741)
T 2ecf_A 266 GVISPAEQAQTQW-I-DLGKEQDIYLARVNW-R--DPQHLSFQRQSRDQKKLDLVEVTLASNQQR----VLAHETSPTWV 336 (741)
T ss_dssp EEECSSTTCCCEE-E-CCCSCSSEEEEEEEE-E--ETTEEEEEEEETTSSEEEEEEEETTTCCEE----EEEEEECSSCC
T ss_pred EEEECCCCCceEE-e-cCCCCcceEEEEEEe-C--CCCEEEEEEecccCCeEEEEEEECCCCceE----EEEEcCCCCcC
Confidence 8888865 44211 1 111146678899999 9 9998887654 567999999874321 1122221
Q ss_pred --ceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEE-EeecccceeeeCeEE-EEccCCC--cE
Q 038537 228 --FAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCL-AASLEMEKVVMGFLV-YSSSLDQ--TF 301 (358)
Q Consensus 228 --~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i-~~~~~~~~~~~~~~l-~s~~~dg--~v 301 (358)
.....++++++++++++.||.++||.+.... . ...+..|...|..+ .|+|+ ++.| ++++.|+ .+
T Consensus 337 ~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~---~-~~~l~~~~~~v~~~~~~s~d------g~~l~~~~~~~~~~~~ 406 (741)
T 2ecf_A 337 PLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG---K-AAALTHGNWSVDELLAVDEK------AGLAYFRAGIESARES 406 (741)
T ss_dssp CCCSCCEECTTSCEEEEECTTSSCEEEEECSSS---C-EEESCCSSSCEEEEEEEETT------TTEEEEEECSSCTTCB
T ss_pred CcCCceEECCCCeEEEEecCCCccEEEEEcCCC---C-eeeeeecceEEEeEeEEeCC------CCEEEEEEeCCCCceE
Confidence 1245788999999999999988888776321 3 55666788888887 59999 6555 5666666 89
Q ss_pred EEEEeee
Q 038537 302 KVWRVKV 308 (358)
Q Consensus 302 ~iw~~~~ 308 (358)
+||++..
T Consensus 407 ~l~~~~~ 413 (741)
T 2ecf_A 407 QIYAVPL 413 (741)
T ss_dssp EEEEEET
T ss_pred EEEEEEc
Confidence 9999974
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=6.7e-22 Score=167.18 Aligned_cols=260 Identities=8% Similarity=-0.007 Sum_probs=179.5
Q ss_pred CCcEEEEeCCCceeeeeeeecccceE--EEEecCCEEE-EEeCCceEEEEecccccccccccccccCCCceeeeecCCCc
Q 038537 8 STRIRVWRQPDCVERGFIKARHGEVR--AILAHDNMLF-TTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNT 84 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~~h~~~v~--~i~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
++.|.+||..+++.+..+..... +. ++..++++++ +...++.|.+||..+++............ .
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-----------~ 135 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHNDLK-PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR-----------T 135 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEESSC-CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC-----------C
T ss_pred CccEEEEcCCCCeEEEEEecCCC-cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc-----------c
Confidence 67899999999988887765433 33 4455777554 55568999999998877654332211000 0
Q ss_pred cccCCCceEEEEEeCCCCEEEEEe--cCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 038537 85 QQQHRDCVSCMAFYHAEGLLYTGS--FDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRR 162 (358)
Q Consensus 85 ~~~h~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 162 (358)
.......+.+++|+|+++.+++++ .++.|.+||..+++ ....+..+...+.+++|+|+++.+++++.++.|.+||+
T Consensus 136 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~ 213 (353)
T 3vgz_A 136 EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK--LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDT 213 (353)
T ss_dssp SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE--EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEET
T ss_pred cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc--eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEEC
Confidence 001112368899999999887776 47899999998887 55555545566889999999999999999999999998
Q ss_pred eecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-CCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEE
Q 038537 163 VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIF 241 (358)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 241 (358)
.+++...........+...+..++++| +++++++++. ++.|.+||+.+.+. ............++++++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~v~~~d~~~~~~----~~~~~~~~~~~~~~s~dg~~l~ 287 (353)
T 3vgz_A 214 ADNKILSRKKLLDDGKEHFFINISLDT--ARQRAFITDSKAAEVLVVDTRNGNI----LAKVAAPESLAVLFNPARNEAY 287 (353)
T ss_dssp TTTEEEEEEECCCSSSCCCEEEEEEET--TTTEEEEEESSSSEEEEEETTTCCE----EEEEECSSCCCEEEETTTTEEE
T ss_pred CCCeEEEEEEcCCCCCCcccceEEECC--CCCEEEEEeCCCCEEEEEECCCCcE----EEEEEcCCCceEEECCCCCEEE
Confidence 765443333222222455678899998 8887666655 59999999987432 2222222234477888988665
Q ss_pred Eee-CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 242 SGS-EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 242 ~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
+++ .++.|.+||..++ +.+..+... ..+.+++|+|+ +++|+.+..+
T Consensus 288 v~~~~~~~v~~~d~~~~----~~~~~~~~~-~~~~~~~~s~d------g~~l~v~~~~ 334 (353)
T 3vgz_A 288 VTHRQAGKVSVIDAKSY----KVVKTFDTP-THPNSLALSAD------GKTLYVSVKQ 334 (353)
T ss_dssp EEETTTTEEEEEETTTT----EEEEEEECC-SEEEEEEECTT------SCEEEEEEEC
T ss_pred EEECCCCeEEEEECCCC----eEEEEEecC-CCCCeEEEcCC------CCEEEEEEcc
Confidence 554 7899999999988 444455443 46799999999 7766555544
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=1.8e-22 Score=166.18 Aligned_cols=223 Identities=13% Similarity=0.022 Sum_probs=159.4
Q ss_pred EEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccC-Cc
Q 038537 44 TTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLD-KR 122 (358)
Q Consensus 44 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~ 122 (358)
.++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|++||+.+ ++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~---------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~ 74 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV---------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS 74 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE---------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS
T ss_pred CCCcceeEEEEeCCCCceee---------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC
Confidence 34678999999998765431 245788899999999999999876 78999999988 76
Q ss_pred cccccccccc-ccCeEEEEEcCCCCEEEEEe--CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEE-E
Q 038537 123 CTCVDSFVAH-ESNVNAIVVNQDDGFVFTCS--SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLY-S 198 (358)
Q Consensus 123 ~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~ 198 (358)
.......+ ...+.+++|+|+++.|++++ .++...+|.+....... ..+. ....+..++|+| +++.|+ +
T Consensus 75 --~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~---~~~~-~~~~~~~~~~sp--dg~~l~~~ 146 (297)
T 2ojh_A 75 --PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP---RLMT-KNLPSYWHGWSP--DGKSFTYC 146 (297)
T ss_dssp --CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC---EECC-SSSSEEEEEECT--TSSEEEEE
T ss_pred --ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce---EEee-cCCCccceEECC--CCCEEEEE
Confidence 33333344 46789999999999999998 44566676664322211 1122 233488889998 888777 7
Q ss_pred eecCCcEEEEEccCCcCCccccceeecccce--eEEEeeeCCEEEEee-CCCeEEEEEcCCCceeeeeeeeecCcccceE
Q 038537 199 GSSDGSINFWEKDKMSGGFNHGGFLQGHCFA--VLCLVAIEKLIFSGS-EDTTIRVWRRAEGGCYHECLAVLDGHRGPVR 275 (358)
Q Consensus 199 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 275 (358)
+..++.+.+|++....... ..+..+... ..+++++++.|+.++ .++.+++|++.... .....+..|...+.
T Consensus 147 ~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~ 220 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSGVE---TRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG---SSVERITDSAYGDW 220 (297)
T ss_dssp EEETTEEEEEEEETTTCCE---EECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS---SCEEECCCCSEEEE
T ss_pred ECCCCceEEEEEECCCCcc---eEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCC---CCcEEEecCCcccC
Confidence 8889999999975422211 122333333 356677888777665 58999999886321 34566677888999
Q ss_pred EEEeecccceeeeCeEEEEccCC-----------CcEEEEEeee
Q 038537 276 CLAASLEMEKVVMGFLVYSSSLD-----------QTFKVWRVKV 308 (358)
Q Consensus 276 ~i~~~~~~~~~~~~~~l~s~~~d-----------g~v~iw~~~~ 308 (358)
.++|+|+ +++|++++.+ +.|.+||+..
T Consensus 221 ~~~~s~d------g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 221 FPHPSPS------GDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp EEEECTT------SSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred CeEECCC------CCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 9999999 7888888766 5699999874
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=2.1e-22 Score=185.95 Aligned_cols=263 Identities=8% Similarity=0.024 Sum_probs=175.8
Q ss_pred EEeeeCCCcEEEEeCCCceee-eeeeecc-----------------cceEEEEecC-CEEEEEeCCceEEEEeccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVER-GFIKARH-----------------GEVRAILAHD-NMLFTTNKDCKIRIWNFTVSDNF 62 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~-~~~~~h~-----------------~~v~~i~~~~-~~l~s~~~dg~i~iw~~~~~~~~ 62 (358)
+++++.|| | +||+.+++.+ ..+..|. ..|.++++++ +.++.+ .++.|++||+.+++..
T Consensus 38 ~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~ 114 (706)
T 2z3z_A 38 YVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVT 114 (706)
T ss_dssp EEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEE
T ss_pred EEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCCeEEEE-ECCEEEEEECCCCceE
Confidence 45666777 8 9999999874 4444443 4588887743 455544 4699999999876543
Q ss_pred ccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccC-----CcccccccccccccC--
Q 038537 63 RTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLD-----KRCTCVDSFVAHESN-- 135 (358)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~-- 135 (358)
. +..+...+.+++|+|+|+.|+++ .++.|++||+.+ ++ .......+...
T Consensus 115 ~---------------------l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~--~~~~~~~~~~~~~ 170 (706)
T 2z3z_A 115 Y---------------------LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR--AIAVTIDGTETLV 170 (706)
T ss_dssp E---------------------EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC--CEESCSCCBTTEE
T ss_pred E---------------------ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC--cEEeccCCCCCeE
Confidence 2 13355668889999999999985 679999999988 66 22222222222
Q ss_pred ------------eEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEEceecCCcce
Q 038537 136 ------------VNAIVVNQDDGFVFTCS---------------------------------SDGSVKIWRRVYRENSHT 170 (358)
Q Consensus 136 ------------v~~~~~~~~~~~l~~~~---------------------------------~dg~i~~wd~~~~~~~~~ 170 (358)
+.++.|+||++.|++++ .+..|++||+.+++..
T Consensus 171 ~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~-- 248 (706)
T 2z3z_A 171 YGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV-- 248 (706)
T ss_dssp ESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE--
T ss_pred cccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE--
Confidence 48899999999999987 4467999998654321
Q ss_pred eeeeecccCCceeEEEEeecCCCcEEEEeecCC-----cEEEEEccCCcCCccccceeeccc-----ceeEEEee--eCC
Q 038537 171 LTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG-----SINFWEKDKMSGGFNHGGFLQGHC-----FAVLCLVA--IEK 238 (358)
Q Consensus 171 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~ 238 (358)
.......+...+..++|+| +++.|++++.++ .|++||+.++....... ...+. .....++| +++
T Consensus 249 ~~~~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~--~~~~~~~~~~~~~~~~sp~~dg~ 324 (706)
T 2z3z_A 249 YLQTGEPKEKFLTNLSWSP--DENILYVAEVNRAQNECKVNAYDAETGRFVRTLF--VETDKHYVEPLHPLTFLPGSNNQ 324 (706)
T ss_dssp ECCCCSCTTCEEEEEEECT--TSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE--EEECSSCCCCCSCCEECTTCSSE
T ss_pred eeccCCCCceeEeeEEEEC--CCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE--EccCCCeECccCCceeecCCCCE
Confidence 1111124567789999998 999999988776 89999998742111111 01111 12357888 999
Q ss_pred EEEEeeCCCeEEEEEcC-CCceeeeeeeeecCcccceEE-EEeecccceeeeCeEE-EEccCCC--cEEEEEee
Q 038537 239 LIFSGSEDTTIRVWRRA-EGGCYHECLAVLDGHRGPVRC-LAASLEMEKVVMGFLV-YSSSLDQ--TFKVWRVK 307 (358)
Q Consensus 239 ~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~h~~~v~~-i~~~~~~~~~~~~~~l-~s~~~dg--~v~iw~~~ 307 (358)
+++++..||.+++|++. .+ ..+..+..|...+.. ++|+|+ ++.| ++++.++ .+.||.++
T Consensus 325 ~l~~~~~~g~~~l~~~~~~~----~~~~~l~~~~~~v~~~~~~spd------g~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 325 FIWQSRRDGWNHLYLYDTTG----RLIRQVTKGEWEVTNFAGFDPK------GTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp EEEEECTTSSCEEEEEETTS----CEEEECCCSSSCEEEEEEECTT------SSEEEEEESSSCTTCBEEEEEE
T ss_pred EEEEEccCCccEEEEEECCC----CEEEecCCCCeEEEeeeEEcCC------CCEEEEEecCCCCceEEEEEEE
Confidence 99999999999999876 33 345566778778877 799999 6555 4555555 34555443
No 140
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=6.9e-22 Score=171.10 Aligned_cols=231 Identities=11% Similarity=0.076 Sum_probs=152.0
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccC
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQH 88 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 88 (358)
+.+++|+.... +........+++.++.++++++.++ +++|+.......... ............. ....+
T Consensus 23 ~~vri~~~~~~-----~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~ 91 (434)
T 2oit_A 23 KKVRIFDSPEE-----LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKP----GDDPNKIVDKVQG-LLVPM 91 (434)
T ss_dssp CEEECSCCCSS-----CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCT----TCCTTCEEECCCC-EEECC
T ss_pred eeEEecCCccc-----cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccc----ccCcccccccCcc-ccccC
Confidence 45777664311 1222334455666788999999888 899886532111000 0000001111111 11246
Q ss_pred CCceEEEEEeCCCCEEE----EEecCCeEEEEEccCC-----cc----cccccccccccCeEEEEEcCC-CCEEEEEeCC
Q 038537 89 RDCVSCMAFYHAEGLLY----TGSFDKTVKAWRVLDK-----RC----TCVDSFVAHESNVNAIVVNQD-DGFVFTCSSD 154 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~-----~~----~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 154 (358)
...|.+++|+|++++|+ +|+.|+.|++||+.+. +. .....+.+|...|.+++|+|+ +.+|++++.|
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D 171 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD 171 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence 77899999999999999 7889999999998764 10 013455678999999999997 8899999999
Q ss_pred CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccce---eecccceeE
Q 038537 155 GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF---LQGHCFAVL 231 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~~~~ 231 (358)
|.|++||++++. .......|...|.+++|+| ++++|++|+.||.|++||++. ......... ...|...+.
T Consensus 172 g~v~iwD~~~~~----~~~~~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 172 GSIAVLQVTETV----KVCATLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPTL-QEKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp SCEEEEEESSSE----EEEEEECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTTC-CEEEEECCCTTCCTTSCEEEE
T ss_pred CeEEEEEcCCCc----ceeeccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccCC-cccccccCCcccCCCCceeEE
Confidence 999999997652 2233445788999999998 899999999999999999882 111111110 112344677
Q ss_pred EEeeeC--CEEEE-eeCCC------eEEEEEcCCC
Q 038537 232 CLVAIE--KLIFS-GSEDT------TIRVWRRAEG 257 (358)
Q Consensus 232 ~~~~~~--~~l~~-~~~dg------~i~iwd~~~~ 257 (358)
++.+.+ .++++ +..|| .+++|++...
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 776654 44433 33443 3899999865
No 141
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.90 E-value=1.3e-22 Score=187.97 Aligned_cols=271 Identities=7% Similarity=-0.004 Sum_probs=181.1
Q ss_pred eeCCCcEEEEeCCCceeeeeeeeccc---ceEEEE--ecCCEEEEEeCC---------ceEEEEeccccccccccccccc
Q 038537 5 GSSSTRIRVWRQPDCVERGFIKARHG---EVRAIL--AHDNMLFTTNKD---------CKIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 5 g~~dg~v~vw~~~~~~~~~~~~~h~~---~v~~i~--~~~~~l~s~~~d---------g~i~iw~~~~~~~~~~~~~~~~ 70 (358)
.+.||+|++||+.+++....+..|.. .|.+++ +++++|++++.+ +.|.+||+.+++.... .
T Consensus 33 ~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l-~---- 107 (723)
T 1xfd_A 33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL-D---- 107 (723)
T ss_dssp CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC-C----
T ss_pred EeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEec-c----
Confidence 36899999999999988877777764 366654 478899998764 7888999988764211 0
Q ss_pred CCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccccccc----------------
Q 038537 71 PRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHES---------------- 134 (358)
Q Consensus 71 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------- 134 (358)
...+|...+..++|+|+|+.|+.++. +.|++||+.+++ .......+..
T Consensus 108 -------------~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~--~~~~~~~~~~~~~~~g~~~~v~~ee~ 171 (723)
T 1xfd_A 108 -------------PPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ--AIRVVSTGKEGVIYNGLSDWLYEEEI 171 (723)
T ss_dssp -------------CTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC--CEEEECCCBTTTEEEEECCHHHHHTT
T ss_pred -------------CCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc--eEEEecCCCCCceECcccceeEEEEe
Confidence 11355666889999999999999886 789999998876 3322222222
Q ss_pred --CeEEEEEcCCCCEEEEEeCCC----------------------------------cEEEEEceecCCcceeee--eec
Q 038537 135 --NVNAIVVNQDDGFVFTCSSDG----------------------------------SVKIWRRVYRENSHTLTM--TLK 176 (358)
Q Consensus 135 --~v~~~~~~~~~~~l~~~~~dg----------------------------------~i~~wd~~~~~~~~~~~~--~~~ 176 (358)
.+.+++|+|||+.|++++.|+ .|++||+.+++....+.. ...
T Consensus 172 ~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 172 LKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPR 251 (723)
T ss_dssp SSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred ccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCC
Confidence 237899999999999987653 789999876543222211 011
Q ss_pred ccCCceeEEEEeecCCCcEEEEeec----CCcEEEEEccCCcCCccccceeecccc------eeEEEeeeCCEEEE--ee
Q 038537 177 FQQSSVNALALSSFFDNYFLYSGSS----DGSINFWEKDKMSGGFNHGGFLQGHCF------AVLCLVAIEKLIFS--GS 244 (358)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~--~~ 244 (358)
.+...+..++|+| +++++++... +..|++||+.++...... ...+.. ....++|+|+.|+. +.
T Consensus 252 ~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~---~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 326 (723)
T 1xfd_A 252 MREYYITMVKWAT--STKVAVTWLNRAQNVSILTLCDATTGVCTKKH---EDESEAWLHRQNEEPVFSKDGRKFFFIRAI 326 (723)
T ss_dssp GSSEEEEEEEESS--SSEEEEEEEETTSCEEEEEEEETTTCCEEEEE---EEECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred CccceeEEEEEeC--CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE---EeccCCEEeccCCCceEcCCCCeEEEEEec
Confidence 2356788999998 8988877653 357999998874321111 111111 24578899987764 45
Q ss_pred CCC------eEEEEE-cCCCceeeeeeeeecCcccceEE-EEeecccceeeeCeEEEEcc-CC--CcEEEEEeeeC
Q 038537 245 EDT------TIRVWR-RAEGGCYHECLAVLDGHRGPVRC-LAASLEMEKVVMGFLVYSSS-LD--QTFKVWRVKVM 309 (358)
Q Consensus 245 ~dg------~i~iwd-~~~~~~~~~~~~~~~~h~~~v~~-i~~~~~~~~~~~~~~l~s~~-~d--g~v~iw~~~~~ 309 (358)
.++ .|++|| ..++.. .....+..+...+.. ++|+|+ ++.|+..+ .+ +.+++|++...
T Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~--~~~~~l~~~~~~~~~~~~~spd------g~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 327 PQGGRGKFYHITVSSSQPNSSN--DNIQSITSGDWDVTKILAYDEK------GNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp CCSSSSCEEEEEEECSSCCSSS--CCCCBSCCSSSCEEEEEEEETT------TTEEEEEESSSCTTCCEEEEECSS
T ss_pred ccCCCcceeEEEEEeccCCCCc--cceeEeecCCeEEEeeeEEcCC------CCEEEEEEcCCCCcceEEEEEeCC
Confidence 666 577777 344320 013334333444554 699999 77776544 44 88999999753
No 142
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=2.6e-21 Score=167.46 Aligned_cols=198 Identities=11% Similarity=0.110 Sum_probs=136.3
Q ss_pred CEEeeeCCCcEEEEeCCCc-----------eee----eeeeecccceEEEEe--cCCEEE----EEeCCceEEEEecccc
Q 038537 1 MVFTGSSSTRIRVWRQPDC-----------VER----GFIKARHGEVRAILA--HDNMLF----TTNKDCKIRIWNFTVS 59 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~-----------~~~----~~~~~h~~~v~~i~~--~~~~l~----s~~~dg~i~iw~~~~~ 59 (358)
+|++|+.|| |++|+.... ... .....+.+.|.++++ ++++|+ +|+.|+.|+|||+.+.
T Consensus 50 ~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~ 128 (434)
T 2oit_A 50 LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTF 128 (434)
T ss_dssp EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHH
T ss_pred EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcccc
Confidence 367788887 888874211 000 011234567998887 477888 7889999999999765
Q ss_pred cccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC-CCEEEEEecCCeEEEEEccCCcccccccccccccCeEE
Q 038537 60 DNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA-EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNA 138 (358)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 138 (358)
......... .+.....+.+|...|.+++|+|+ +.+|++++.||+|++||++++. .......|...|.+
T Consensus 129 ~~~~~~~~~---------~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~--~~~~~~~~~~~v~~ 197 (434)
T 2oit_A 129 SNEAKQQKR---------PFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV--KVCATLPSTVAVTS 197 (434)
T ss_dssp HCTTCSSCC---------CSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE--EEEEEECGGGCEEE
T ss_pred ccCCcCCcc---------eeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc--ceeeccCCCCceeE
Confidence 110000000 00001134679999999999997 7899999999999999999875 45555678899999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeec---ccCCceeEEEEeecCCCcEEEEe-ecCC------cEEEE
Q 038537 139 IVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLK---FQQSSVNALALSSFFDNYFLYSG-SSDG------SINFW 208 (358)
Q Consensus 139 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~-~~dg------~i~i~ 208 (358)
++|+|++++|++|+.||.|++||++ +.....+..... .|...+.+++|++ ++.++++. ..+| .+++|
T Consensus 198 v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~--~~~~l~~~~~~dg~~~~~~~v~i~ 274 (434)
T 2oit_A 198 VCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIG--TYVFAIVYAAADGTLETSPDVVMA 274 (434)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEE--TTEEEEEEEETTCCSSSCCEEEEE
T ss_pred EEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEec--CceEEEEEccCCCccCCCCceEEE
Confidence 9999999999999999999999986 222222211111 1234788999988 77666543 3343 38999
Q ss_pred EccCC
Q 038537 209 EKDKM 213 (358)
Q Consensus 209 d~~~~ 213 (358)
++++.
T Consensus 275 ~l~~~ 279 (434)
T 2oit_A 275 LLPKK 279 (434)
T ss_dssp ECCCT
T ss_pred EeccC
Confidence 99864
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=3e-21 Score=162.42 Aligned_cols=239 Identities=15% Similarity=0.185 Sum_probs=157.3
Q ss_pred EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecC-CeEEEEEcc
Q 038537 41 MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD-KTVKAWRVL 119 (358)
Q Consensus 41 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~~ 119 (358)
.+++++.|+.|++|+++......... ...|...+.+++|+|++++|++++.+ +.|.+|++.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~ 68 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 68 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEec
Confidence 34455789999999996322111110 12466678899999999999888886 999999997
Q ss_pred --CCcccccccccccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEE
Q 038537 120 --DKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFL 196 (358)
Q Consensus 120 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 196 (358)
+++...+..+..+. .+..++|+|+++++++++. ++.|.+||+..+ .......... ....+.+++|+| +++++
T Consensus 69 ~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-~~~~~~~~~~-~~~~~~~~~~s~--dg~~l 143 (343)
T 1ri6_A 69 PDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG-LPVGVVDVVE-GLDGCHSANISP--DNRTL 143 (343)
T ss_dssp TTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETT-EEEEEEEEEC-CCTTBCCCEECT--TSSEE
T ss_pred CCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCC-cccccccccc-CCCCceEEEECC--CCCEE
Confidence 55533444444333 7889999999998877665 888999999521 1122222222 234688999998 88888
Q ss_pred EEee-cCCcEEEEEccC-CcCCccc--ccee-ecccceeEEEeeeCCEEEEe-eCCCeEEEEEcCC--Ccee-eeeeeee
Q 038537 197 YSGS-SDGSINFWEKDK-MSGGFNH--GGFL-QGHCFAVLCLVAIEKLIFSG-SEDTTIRVWRRAE--GGCY-HECLAVL 267 (358)
Q Consensus 197 ~~~~-~dg~i~i~d~~~-~~~~~~~--~~~~-~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~--~~~~-~~~~~~~ 267 (358)
++++ .++.|.+||+.. ....... .... .+......+++|++++++++ ..++.|.+|++.. ++.. ......+
T Consensus 144 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~ 223 (343)
T 1ri6_A 144 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM 223 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred EEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecccc
Confidence 8777 899999999976 2211000 0001 11122336678888866554 4889999999954 3221 1112212
Q ss_pred cCc---ccceEEEEeecccceeeeCeEEE-EccCCCcEEEEEeee
Q 038537 268 DGH---RGPVRCLAASLEMEKVVMGFLVY-SSSLDQTFKVWRVKV 308 (358)
Q Consensus 268 ~~h---~~~v~~i~~~~~~~~~~~~~~l~-s~~~dg~v~iw~~~~ 308 (358)
... ...+.+++|+|+ +++|+ ++..|+.|.+||+..
T Consensus 224 ~~~~~~~~~~~~i~~s~d------g~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 224 PENFSDTRWAADIHITPD------GRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp CTTCCSCCCEEEEEECTT------SSEEEEEETTTTEEEEEEECT
T ss_pred CccccccCCccceEECCC------CCEEEEEecCCCEEEEEEEcC
Confidence 211 335778999999 65554 666899999999973
No 144
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.89 E-value=4.5e-21 Score=161.80 Aligned_cols=265 Identities=9% Similarity=0.018 Sum_probs=169.8
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecc-cceEEEE--ecCCEE-EEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARH-GEVRAIL--AHDNML-FTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~-~~v~~i~--~~~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
++++++.++.|++||..+++.+..+..+. ..+..+. ++++++ +++..++.|.+||+.+++..........+
T Consensus 13 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~----- 87 (349)
T 1jmx_B 13 YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP----- 87 (349)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST-----
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc-----
Confidence 46888999999999999999888877554 1344444 467655 45567899999999877654322211000
Q ss_pred eeecCCCccccCCCceEEEEEeCCCCEEEEEecC------------CeEEEEEccCCcccccccccccccCeEEEEEcCC
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD------------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD 144 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 144 (358)
..+...+.+++|+|++++|++++.+ +.|.+||+.+++.........+...+.+++|+|+
T Consensus 88 ---------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~d 158 (349)
T 1jmx_B 88 ---------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD 158 (349)
T ss_dssp ---------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred ---------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCC
Confidence 0012347789999999999998865 8999999988552222122234456889999999
Q ss_pred CCEEEEEeCCCcEEEEEceecCCcceeeeeeccc----------------C----CceeEEEEeecCCC-----------
Q 038537 145 DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQ----------------Q----SSVNALALSSFFDN----------- 193 (358)
Q Consensus 145 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~----------------~----~~i~~~~~~~~~~~----------- 193 (358)
++ +++++ +.|.+||+.+++....+....... . .....+++.+ ++
T Consensus 159 g~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~ 233 (349)
T 1jmx_B 159 GS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK--DDKQDPATADLLY 233 (349)
T ss_dssp SC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---------CCCEEEE
T ss_pred Cc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecC--CCcCCccccccce
Confidence 99 55554 449999986654332221100000 0 0223344443 21
Q ss_pred cEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEee-eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCccc
Q 038537 194 YFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA-IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRG 272 (358)
Q Consensus 194 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~ 272 (358)
.++.....++.+.++++.. .+......++++ ++++++++ ++.|.+||+.++ +.+..+.. ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~----~~~~~~~~-~~ 295 (349)
T 1jmx_B 234 GYLSVDLKTGKTHTQEFAD-----------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR----KLIKAANL-DH 295 (349)
T ss_dssp EEEEEETTTCCEEEEEEEE-----------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT----EEEEEEEC-SS
T ss_pred eEEEEeccCCcEEeccccc-----------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccC----eEEEEEcC-CC
Confidence 1122333345566655432 112233467788 99999888 889999999988 34444432 34
Q ss_pred ceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 273 PVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 273 ~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.+.+++|+|+ +++|++++.++.|.+||+.+
T Consensus 296 ~~~~~~~s~d------g~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 296 TYYCVAFDKK------GDKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp CCCEEEECSS------SSCEEEESBSSEEEEEETTT
T ss_pred CccceEECCC------CCEEEEecCCCeEEEEeccc
Confidence 5779999999 77777788899999999874
No 145
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.89 E-value=1.6e-19 Score=153.10 Aligned_cols=271 Identities=9% Similarity=0.086 Sum_probs=172.2
Q ss_pred eCCCcEEEEeC--CCceeeeeeeecccceE--EEEecCCEEEEEeCC----ceEEEEecccc-cccccccccccCCCcee
Q 038537 6 SSSTRIRVWRQ--PDCVERGFIKARHGEVR--AILAHDNMLFTTNKD----CKIRIWNFTVS-DNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 6 ~~dg~v~vw~~--~~~~~~~~~~~h~~~v~--~i~~~~~~l~s~~~d----g~i~iw~~~~~-~~~~~~~~~~~~~~~~~ 76 (358)
+.++.|.+|++ .+++.......+..... ++++++++|++++.+ +.|.+|+++.. .......
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~---------- 93 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN---------- 93 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE----------
T ss_pred CCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee----------
Confidence 34568999866 45554332222555554 445578889988876 79999998763 1111110
Q ss_pred eeecCCCccccCCCceEEEEEeCCCCEEEEEe-cCCeEEEEEccCCc-cccccccc-----------ccccCeEEEEEcC
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS-FDKTVKAWRVLDKR-CTCVDSFV-----------AHESNVNAIVVNQ 143 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~-~~~~~~~~-----------~~~~~v~~~~~~~ 143 (358)
....+......+++ ++++|++++ .++.|.+|++.... ...+.... .+...+.+++|+|
T Consensus 94 -------~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp 164 (361)
T 3scy_A 94 -------TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP 164 (361)
T ss_dssp -------EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred -------EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence 11224445677777 778777766 57899999997543 11111111 1233468899999
Q ss_pred CCCEEEEEe-CCCcEEEEEceecCC----c-cee----eeeecccCCceeEEEEeecCCCcEEEEee-cCCcEEEEEccC
Q 038537 144 DDGFVFTCS-SDGSVKIWRRVYREN----S-HTL----TMTLKFQQSSVNALALSSFFDNYFLYSGS-SDGSINFWEKDK 212 (358)
Q Consensus 144 ~~~~l~~~~-~dg~i~~wd~~~~~~----~-~~~----~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~ 212 (358)
+++++++++ .++.|.+|++..... . ... ..........+..++|+| +++++++++ .++.|.+||+.+
T Consensus 165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~ 242 (361)
T 3scy_A 165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS--DGKFAYLINEIGGTVIAFRYAD 242 (361)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTCEEEEEEEET
T ss_pred CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC--CCCEEEEEcCCCCeEEEEEecC
Confidence 999776655 488999999875432 1 110 111222345678899998 898877776 689999999885
Q ss_pred CcCCccccceeecc-----cceeEEEeeeCCEEEEeeC--CCeEEEEEcC--CCceeeeeeeeecCcccceEEEEeeccc
Q 038537 213 MSGGFNHGGFLQGH-----CFAVLCLVAIEKLIFSGSE--DTTIRVWRRA--EGGCYHECLAVLDGHRGPVRCLAASLEM 283 (358)
Q Consensus 213 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 283 (358)
+. .......... ...-.+++|++++|+++.. ++.|.+|++. +++. +.+..+.. ...+.+++|+|+
T Consensus 243 g~--~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~--~~~~~~~~-g~~~~~~~~spd- 316 (361)
T 3scy_A 243 GM--LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL--TKVGYQLT-GIHPRNFIITPN- 316 (361)
T ss_dssp TE--EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE--EEEEEEEC-SSCCCEEEECTT-
T ss_pred Cc--eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE--EEeeEecC-CCCCceEEECCC-
Confidence 32 1111111111 1234678899998877665 4899999996 3432 34444444 456789999999
Q ss_pred ceeeeCeEEEEcc-CCCcEEEEEeee
Q 038537 284 EKVVMGFLVYSSS-LDQTFKVWRVKV 308 (358)
Q Consensus 284 ~~~~~~~~l~s~~-~dg~v~iw~~~~ 308 (358)
+++|++++ .++.|.+|+++.
T Consensus 317 -----g~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 317 -----GKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp -----SCEEEEEETTTTEEEEEEECT
T ss_pred -----CCEEEEEECCCCCEEEEEEEC
Confidence 77776666 779999998863
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=5.5e-21 Score=176.48 Aligned_cols=277 Identities=10% Similarity=0.049 Sum_probs=180.2
Q ss_pred CCCcEEEEeCCCceeeeeeeecccceEE--EEecCCEEEEEeCCceEEEEeccc-----ccccccccccccCCCceeeee
Q 038537 7 SSTRIRVWRQPDCVERGFIKARHGEVRA--ILAHDNMLFTTNKDCKIRIWNFTV-----SDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~~h~~~v~~--i~~~~~~l~s~~~dg~i~iw~~~~-----~~~~~~~~~~~~~~~~~~~~~ 79 (358)
.++.|++||+.+++.... ..+...+.+ ++++++.|+++ .|+.|++|++.+ ++......... .. .. .
T Consensus 99 ~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~---~~-~~-~ 171 (706)
T 2z3z_A 99 TQGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT---ET-LV-Y 171 (706)
T ss_dssp ETTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB---TT-EE-E
T ss_pred ECCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC---CC-eE-c
Confidence 469999999998876543 445555554 45578888885 689999999987 55432111000 00 00 0
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEe---------------------------------cCCeEEEEEccCCccccc
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGS---------------------------------FDKTVKAWRVLDKRCTCV 126 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~ 126 (358)
.. .....+...+.+++|+|+|++|++++ .+..|.+||+.+++...+
T Consensus 172 g~-~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~ 250 (706)
T 2z3z_A 172 GQ-AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL 250 (706)
T ss_dssp SS-CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC
T ss_pred cc-chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee
Confidence 00 01123334568999999999999987 447899999988873333
Q ss_pred ccccccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEceecCCcceeeeeecccC---CceeEEEEeecCCCcEEEE
Q 038537 127 DSFVAHESNVNAIVVNQDDGFVFTCSSDG-----SVKIWRRVYRENSHTLTMTLKFQQ---SSVNALALSSFFDNYFLYS 198 (358)
Q Consensus 127 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~l~~ 198 (358)
.....|...+.+++|+|+++.|++++.++ .|++||+.+++....+.. ..+. ..+..++|+|..+++++++
T Consensus 251 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~--~~~~~~~~~~~~~~~sp~~dg~~l~~ 328 (706)
T 2z3z_A 251 QTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFV--ETDKHYVEPLHPLTFLPGSNNQFIWQ 328 (706)
T ss_dssp CCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEE--EECSSCCCCCSCCEECTTCSSEEEEE
T ss_pred ccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEE--ccCCCeECccCCceeecCCCCEEEEE
Confidence 32235667899999999999999988776 899999876522222211 1112 1246678875226778999
Q ss_pred eecCCcEEEEEccCCcCCccccceeeccccee---EEEeeeCCEEEEee-CCC----eEEEEEcCCCceeeeeeeeecCc
Q 038537 199 GSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV---LCLVAIEKLIFSGS-EDT----TIRVWRRAEGGCYHECLAVLDGH 270 (358)
Q Consensus 199 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~-~dg----~i~iwd~~~~~~~~~~~~~~~~h 270 (358)
++.|+.+++|++.... .....+..+...+ .+++++++.|+.++ .++ .|+.||+.+++ ...+ .|
T Consensus 329 ~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~-----~~~l-~~ 399 (706)
T 2z3z_A 329 SRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK-----TKDL-TP 399 (706)
T ss_dssp ECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC-----CEES-CC
T ss_pred EccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC-----ceec-cC
Confidence 9999999999876311 1112233344333 56788888776554 444 67777877763 2223 26
Q ss_pred ccceEEEEeecccceeeeCeEEEEccCC----CcEEEEEeee
Q 038537 271 RGPVRCLAASLEMEKVVMGFLVYSSSLD----QTFKVWRVKV 308 (358)
Q Consensus 271 ~~~v~~i~~~~~~~~~~~~~~l~s~~~d----g~v~iw~~~~ 308 (358)
...+.+++|+|+ +++|+..+.+ +.|.+||+..
T Consensus 400 ~~~~~~~~~spd------g~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 400 ESGMHRTQLSPD------GSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp SSSEEEEEECTT------SSEEEEEEECSSCSCEEEEEESSS
T ss_pred CCceEEEEECCC------CCEEEEEecCCCCCcEEEEEECCC
Confidence 677999999999 7677655433 5699999864
No 147
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=5.7e-21 Score=177.39 Aligned_cols=257 Identities=7% Similarity=-0.041 Sum_probs=169.9
Q ss_pred cceEEEEe--cCCEEEEEeC-Cc-----eEEEEecccccccccccccccCCCceeeeecCCC----ccccCCCceEEEEE
Q 038537 30 GEVRAILA--HDNMLFTTNK-DC-----KIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSN----TQQQHRDCVSCMAF 97 (358)
Q Consensus 30 ~~v~~i~~--~~~~l~s~~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~h~~~v~~~~~ 97 (358)
..+.++.+ +|++|++++. |+ .|++||+.+++................+...... ........|.+++|
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 35666655 7889999998 88 9999999887654332211110000000000000 00000134789999
Q ss_pred eCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecc
Q 038537 98 YHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKF 177 (358)
Q Consensus 98 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 177 (358)
+|+|++|++++. +.|++||+.++.......+..|...+..++|+|||+.|+.++ ++.|++||+.+++.. .....
T Consensus 117 SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~----~~~~~ 190 (741)
T 2ecf_A 117 SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM----QLTAD 190 (741)
T ss_dssp CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE----ECCCC
T ss_pred CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE----EeccC
Confidence 999999999886 999999998871001344566778899999999999999887 568999998654321 11111
Q ss_pred cCC----------------ceeEEEEeecCCCcEEEEeecCC---------------------------------cEEEE
Q 038537 178 QQS----------------SVNALALSSFFDNYFLYSGSSDG---------------------------------SINFW 208 (358)
Q Consensus 178 ~~~----------------~i~~~~~~~~~~~~~l~~~~~dg---------------------------------~i~i~ 208 (358)
+.. .+..++|+| ++++|++++.|+ .|.+|
T Consensus 191 ~~~~~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 191 GSTTIGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCSSEEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred CccceeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 111 257899998 999999988765 78888
Q ss_pred EccC-CcCCccccceeecccc--eeEEEeeeCCEEEEeeC-----CCeEEEEEcCCCceeeeeeeeecCccc----ceEE
Q 038537 209 EKDK-MSGGFNHGGFLQGHCF--AVLCLVAIEKLIFSGSE-----DTTIRVWRRAEGGCYHECLAVLDGHRG----PVRC 276 (358)
Q Consensus 209 d~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~h~~----~v~~ 276 (358)
|+.+ ........ ...+.. ...++ |+++.|++++. +..|++||+.+++. ...+..+.. .+..
T Consensus 269 d~~~~~~~~~~~~--~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~----~~~~~~~~~~~~~~~~~ 341 (741)
T 2ecf_A 269 SPAEQAQTQWIDL--GKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ----RVLAHETSPTWVPLHNS 341 (741)
T ss_dssp CSSTTCCCEEECC--CSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE----EEEEEEECSSCCCCCSC
T ss_pred ECCCCCceEEecC--CCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce----EEEEEcCCCCcCCcCCc
Confidence 9876 44211110 112333 34677 99999887653 57899999998843 333333332 4568
Q ss_pred EEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 277 LAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 277 i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
++|+|+ |+++++++.||.++||.++
T Consensus 342 ~~~spd------g~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 342 LRFLDD------GSILWSSERTGFQHLYRID 366 (741)
T ss_dssp CEECTT------SCEEEEECTTSSCEEEEEC
T ss_pred eEECCC------CeEEEEecCCCccEEEEEc
Confidence 999999 8899999999999999886
No 148
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=1e-20 Score=181.52 Aligned_cols=268 Identities=9% Similarity=-0.057 Sum_probs=195.1
Q ss_pred EEeeeCCCcEEEEeCCC-ceeeeeeeeccc-ceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPD-CVERGFIKARHG-EVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~-~~~~~~~~~h~~-~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
+++++.||.++||.+.. +.....+..|.. ...+++++++.|+.+. ++.|.+|++...... ........
T Consensus 217 ~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~l~-~l~~~~~~-------- 286 (1045)
T 1k32_A 217 YFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK-GGSIYIFNPDTEKIE-KIEIGDLE-------- 286 (1045)
T ss_dssp EEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE-TTEEEEECTTTCCEE-ECCCCCCC--------
T ss_pred EEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEe-CCEEEEecCCceEee-eeccCccc--------
Confidence 46777889999997642 333444544443 3446777899888874 899999998433221 11100000
Q ss_pred cCCCccccCCCceEEEEEe-CCCCEEEEEecCCeEEEEEccCCccccccccccccc-CeEEEEEcCCCCEEEEEeCCCcE
Q 038537 80 SKSNTQQQHRDCVSCMAFY-HAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHES-NVNAIVVNQDDGFVFTCSSDGSV 157 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i 157 (358)
.......|...+.+++|+ |+|+.|++++ ++.|.+|++..++ ...+..|.. .+..++|+ +++.++.++.++.+
T Consensus 287 -~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l 360 (1045)
T 1k32_A 287 -SPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY---VLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDF 360 (1045)
T ss_dssp -BCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB---EEECSCCSCEEEEEECSS-SEEEEEEEETTEEE
T ss_pred -ccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc---eEEccCCCcceEEeeeEc-CCCeEEEEECCCce
Confidence 000112466679999999 9999999887 7899999998776 233455666 89999999 99999999988888
Q ss_pred E-EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccce--eEEEe
Q 038537 158 K-IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFA--VLCLV 234 (358)
Q Consensus 158 ~-~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~ 234 (358)
. +||+..+. . ..+..+...+..++|+| ++++|++++.++.|++||+.++. ......+|... ..+++
T Consensus 361 ~~~~d~~~~~----~-~~l~~~~~~~~~~~~Sp--DG~~la~~~~~~~v~~~d~~tg~----~~~~~~~~~~~v~~~~~S 429 (1045)
T 1k32_A 361 LGIYDYRTGK----A-EKFEENLGNVFAMGVDR--NGKFAVVANDRFEIMTVDLETGK----PTVIERSREAMITDFTIS 429 (1045)
T ss_dssp EEEEETTTCC----E-EECCCCCCSEEEEEECT--TSSEEEEEETTSEEEEEETTTCC----EEEEEECSSSCCCCEEEC
T ss_pred EEEEECCCCC----c-eEecCCccceeeeEECC--CCCEEEEECCCCeEEEEECCCCc----eEEeccCCCCCccceEEC
Confidence 8 88875432 1 12225678899999998 99999999999999999998743 22223344433 46788
Q ss_pred eeCCEEEEeeCCC----------eEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEE
Q 038537 235 AIEKLIFSGSEDT----------TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVW 304 (358)
Q Consensus 235 ~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw 304 (358)
|++++|++++.++ .|++||+.++ + ...+..|...+..++|+|+ |++|++++.++...+|
T Consensus 430 pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g----~-~~~l~~~~~~~~~~~~spd------G~~l~~~s~~~~~~~~ 498 (1045)
T 1k32_A 430 DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR----K-IFAATTENSHDYAPAFDAD------SKNLYYLSYRSLDPSP 498 (1045)
T ss_dssp TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT----E-EEECSCSSSBEEEEEECTT------SCEEEEEESCCCCCEE
T ss_pred CCCCeEEEEecCccccccCCCCCeEEEEECCCC----c-EEEeeCCCcccCCceEcCC------CCEEEEEecccCCcCc
Confidence 9999998887654 8999999987 3 5566778888999999999 8899999998888888
Q ss_pred Eee
Q 038537 305 RVK 307 (358)
Q Consensus 305 ~~~ 307 (358)
+..
T Consensus 499 ~~~ 501 (1045)
T 1k32_A 499 DRV 501 (1045)
T ss_dssp CSS
T ss_pred chh
Confidence 754
No 149
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.87 E-value=6.8e-20 Score=155.59 Aligned_cols=273 Identities=10% Similarity=0.074 Sum_probs=172.1
Q ss_pred EEeeeCC--CcEEEEeC--CCceeeeeee---ecccceEEEE--ecCCEEEEEeCCceEEEEecc-cccccccccccccC
Q 038537 2 VFTGSSS--TRIRVWRQ--PDCVERGFIK---ARHGEVRAIL--AHDNMLFTTNKDCKIRIWNFT-VSDNFRTKKVTTLP 71 (358)
Q Consensus 2 l~tg~~d--g~v~vw~~--~~~~~~~~~~---~h~~~v~~i~--~~~~~l~s~~~dg~i~iw~~~-~~~~~~~~~~~~~~ 71 (358)
|++|+.. +.|.+|++ .+++....-. .....+..++ +++++|++++.+ .|.+|++. +++.......
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~---- 79 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH---- 79 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE----
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe----
Confidence 5667664 56888764 5665432211 1223455554 468889998888 99999997 5443211000
Q ss_pred CCceeeeecCCCccccCCCceEEEEEeCCCCE--EEEEe-------------cCCeEEEEEccC-Cccccccccc----c
Q 038537 72 RRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGL--LYTGS-------------FDKTVKAWRVLD-KRCTCVDSFV----A 131 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~~~~-------------~dg~i~iwd~~~-~~~~~~~~~~----~ 131 (358)
..+ +.+.+++|+|+|++ +++++ .++.+.+|++.. ++. ...+. .
T Consensus 80 --------------~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~--~~~~~~~~~~ 142 (365)
T 1jof_A 80 --------------PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL--EKNVQNYEYQ 142 (365)
T ss_dssp --------------ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE--EEEEEEEECC
T ss_pred --------------ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC--cceEeeEEeC
Confidence 011 12455899999994 45553 689999999974 442 22222 2
Q ss_pred cccCeEEEEEcCCCCEEEEEeC-CCcEEEEEce-ecCCcceeeeeec--ccCCceeEEEEeecCCCcEEEEeec-CCcEE
Q 038537 132 HESNVNAIVVNQDDGFVFTCSS-DGSVKIWRRV-YRENSHTLTMTLK--FQQSSVNALALSSFFDNYFLYSGSS-DGSIN 206 (358)
Q Consensus 132 ~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~-~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~-dg~i~ 206 (358)
+...+.+++|+|++++++++.. ++.|++||+. +++.. ...... .+...+..++|+| +++++++++. ++.|.
T Consensus 143 ~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~--~~~~~~~~~~g~~p~~~~~sp--dg~~l~v~~~~~~~v~ 218 (365)
T 1jof_A 143 ENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE--LVGSVDAPDPGDHPRWVAMHP--TGNYLYALMEAGNRIC 218 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE--EEEEEECSSTTCCEEEEEECT--TSSEEEEEETTTTEEE
T ss_pred CCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE--EeeeEecCCCCCCCCEeEECC--CCCEEEEEECCCCeEE
Confidence 4567999999999998887764 6799999996 33321 111222 2356688999998 9988887765 78999
Q ss_pred EEEccCCcCCcc----cccee----eccc--------ceeEE-EeeeCCEEEEeeCC-C-----eEEEEEcC-CCceeee
Q 038537 207 FWEKDKMSGGFN----HGGFL----QGHC--------FAVLC-LVAIEKLIFSGSED-T-----TIRVWRRA-EGGCYHE 262 (358)
Q Consensus 207 i~d~~~~~~~~~----~~~~~----~~~~--------~~~~~-~~~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~~ 262 (358)
+|++........ ....+ .++. ..-.+ ++|++++|+++..+ . .|.+|++. +++. .
T Consensus 219 v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~--~ 296 (365)
T 1jof_A 219 EYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSI--E 296 (365)
T ss_dssp EEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCE--E
T ss_pred EEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCE--E
Confidence 998763211111 00111 1222 23356 88999988876643 2 89999996 4432 1
Q ss_pred eee-eecCcccceEEEEeec---ccceeeeCeEEEEccC-CCcEEEEEeee
Q 038537 263 CLA-VLDGHRGPVRCLAASL---EMEKVVMGFLVYSSSL-DQTFKVWRVKV 308 (358)
Q Consensus 263 ~~~-~~~~h~~~v~~i~~~~---~~~~~~~~~~l~s~~~-dg~v~iw~~~~ 308 (358)
.+. ....+...+..++|+| + +++|++++. ++.|.+|++..
T Consensus 297 ~~~~~~~~~~~~~~~~a~sp~~~d------g~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 297 KQLFLSPTPTSGGHSNAVSPCPWS------DEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp EEEEEEECSSCCTTCCCEEECTTC------TTEEEEECSSSCEEEEEEEET
T ss_pred EeeeeeecCCCCcccceecCCCcC------CCEEEEEEcCCCeEEEEEEch
Confidence 111 2333445567889999 7 778887775 58999999974
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=1.7e-19 Score=173.09 Aligned_cols=262 Identities=9% Similarity=-0.018 Sum_probs=190.7
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeeccc-ceEEEEe-cCCEEEEEeCCceEE-EEecccccccccccccccCCCceeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHG-EVRAILA-HDNMLFTTNKDCKIR-IWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~-~v~~i~~-~~~~l~s~~~dg~i~-iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
|++++ ++.|.+|+..+++... +..|.. .+..+.+ +++.|+.++.++.+. +|++.+++..
T Consensus 311 la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~---------------- 372 (1045)
T 1k32_A 311 IAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE---------------- 372 (1045)
T ss_dssp EEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE----------------
T ss_pred EEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCce----------------
Confidence 55555 7899999998776543 556666 7777766 466888888888888 8998765432
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC---
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG--- 155 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--- 155 (358)
.+.+|...+..++|+|+|+.|++++.++.|++||+.+++ .......|...+.+++|+|++++|++++.++
T Consensus 373 -----~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~--~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 373 -----KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK--PTVIERSREAMITDFTISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp -----ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred -----EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCc--eEEeccCCCCCccceEECCCCCeEEEEecCcccc
Confidence 113567789999999999999999999999999999887 4444557888999999999999999887754
Q ss_pred -------cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcC-------------
Q 038537 156 -------SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSG------------- 215 (358)
Q Consensus 156 -------~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------- 215 (358)
.|++||+.+++ ...+..+...+..++|+| ++++|++++.++...+|+......
T Consensus 446 ~~~~~~~~i~l~d~~~g~-----~~~l~~~~~~~~~~~~sp--dG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGRK-----IFAATTENSHDYAPAFDA--DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL 518 (1045)
T ss_dssp TCSCCEEEEEEEETTTTE-----EEECSCSSSBEEEEEECT--TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEES
T ss_pred ccCCCCCeEEEEECCCCc-----EEEeeCCCcccCCceEcC--CCCEEEEEecccCCcCcchhccccccccCceeEEEEe
Confidence 89999986543 234445677788899998 999999999887777776432110
Q ss_pred ------C--------------c------cccceeecccce--eEEEeeeCCEEEE-------------eeCCCeEEEEEc
Q 038537 216 ------G--------------F------NHGGFLQGHCFA--VLCLVAIEKLIFS-------------GSEDTTIRVWRR 254 (358)
Q Consensus 216 ------~--------------~------~~~~~~~~~~~~--~~~~~~~~~~l~~-------------~~~dg~i~iwd~ 254 (358)
. . .....+..+... ..++++++.++++ ......|++||+
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~ 598 (1045)
T 1k32_A 519 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 598 (1045)
T ss_dssp STTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEET
T ss_pred CCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEEC
Confidence 0 0 000111123232 3566778877775 123557889999
Q ss_pred CCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 255 AEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 255 ~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
.+++. ..+. ..+.+++|+|+ |+.|++++.| .|++||+...+
T Consensus 599 ~~~~~-----~~l~---~~v~~~~~S~D------G~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 599 KTRKV-----TEVK---NNLTDLRLSAD------RKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp TTCCE-----EEEE---EEEEEEEECTT------SCEEEEEETT-SCEEEEESSCT
T ss_pred CCCcE-----EEee---cCcceEEECCC------CCEEEEEcCC-cEEEEeCccCc
Confidence 88742 2222 56889999999 8899988766 89999998654
No 151
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=1.1e-19 Score=153.51 Aligned_cols=238 Identities=11% Similarity=0.067 Sum_probs=163.9
Q ss_pred cceEEEE--ecCCEEEEEeC-------CceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC
Q 038537 30 GEVRAIL--AHDNMLFTTNK-------DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA 100 (358)
Q Consensus 30 ~~v~~i~--~~~~~l~s~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 100 (358)
..+..+. ++++++++++. ++.|.+||..+++...... ....+..++|+|+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---------------------~~~~~~~~~~s~d 99 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH---------------------NDLKPFGATINNT 99 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE---------------------ESSCCCSEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe---------------------cCCCcceEEECCC
Confidence 3444554 46777777763 5789999998876554322 1233677999999
Q ss_pred CCEEEE-EecCCeEEEEEccCCccccccccccccc---------CeEEEEEcCCCCEEEEEe--CCCcEEEEEceecCCc
Q 038537 101 EGLLYT-GSFDKTVKAWRVLDKRCTCVDSFVAHES---------NVNAIVVNQDDGFVFTCS--SDGSVKIWRRVYRENS 168 (358)
Q Consensus 101 ~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~ 168 (358)
++.++. ...++.|.+||..+++ .+..+..+.. .+.+++|+|+++.+++++ .++.|.+||+.+++
T Consensus 100 g~~l~v~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~-- 175 (353)
T 3vgz_A 100 TQTLWFGNTVNSAVTAIDAKTGE--VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIK-- 175 (353)
T ss_dssp TTEEEEEETTTTEEEEEETTTCC--EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTE--
T ss_pred CCEEEEEecCCCEEEEEeCCCCe--eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCc--
Confidence 985554 4557999999999887 4444443322 278899999999887776 47889999986543
Q ss_pred ceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccc--eeEEEeeeCCEEEEee-C
Q 038537 169 HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCF--AVLCLVAIEKLIFSGS-E 245 (358)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~-~ 245 (358)
....+..+...+..++++| +++++++++.++.|.+||+.+............++.. .-.+++++++++++++ .
T Consensus 176 --~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 251 (353)
T 3vgz_A 176 --LKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSK 251 (353)
T ss_dssp --EEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESS
T ss_pred --eEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCC
Confidence 2333333455688899998 9999999999999999999874322211110111222 2367788888776665 4
Q ss_pred CCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCe-EEEEccCCCcEEEEEeee
Q 038537 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGF-LVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~-~l~s~~~dg~v~iw~~~~ 308 (358)
++.|.+||..+++ .+..+.... ...++|+|+ ++ ++++...++.|.+||+..
T Consensus 252 ~~~v~~~d~~~~~----~~~~~~~~~--~~~~~~s~d------g~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 252 AAEVLVVDTRNGN----ILAKVAAPE--SLAVLFNPA------RNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp SSEEEEEETTTCC----EEEEEECSS--CCCEEEETT------TTEEEEEETTTTEEEEEETTT
T ss_pred CCEEEEEECCCCc----EEEEEEcCC--CceEEECCC------CCEEEEEECCCCeEEEEECCC
Confidence 5999999999884 344443332 257999999 65 556666799999999874
No 152
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=3.5e-20 Score=155.23 Aligned_cols=233 Identities=12% Similarity=0.043 Sum_probs=158.7
Q ss_pred CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec-CCeEEEEE
Q 038537 39 DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF-DKTVKAWR 117 (358)
Q Consensus 39 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd 117 (358)
+..+++++.++.|.+||..+++..... ..+...+ +++|+|+++++++++. ++.|.+||
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~--------------------~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d 68 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQI--------------------TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIE 68 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEE--------------------ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEE
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeE--------------------EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEE
Confidence 335778888999999999887664322 2234445 9999999997766655 88999999
Q ss_pred ccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC---cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCc
Q 038537 118 VLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG---SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNY 194 (358)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 194 (358)
+.+++. ....+..+..+..+++|+|++++++++..++ .|.+||+.+++... ... .......++|+| +++
T Consensus 69 ~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~----~~~-~~~~~~~~~~sp--dg~ 140 (331)
T 3u4y_A 69 TQLEPP-KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIS----TIP-IPYDAVGIAISP--NGN 140 (331)
T ss_dssp CSSSSC-EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEE----EEE-CCTTEEEEEECT--TSS
T ss_pred CCCCce-eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEE----EEE-CCCCccceEECC--CCC
Confidence 998872 1455555666665599999999999655553 89999996554322 222 244568999998 887
Q ss_pred EEE-EeecCCc-EEEEEccCCcCCccc-cce-eecccceeEEEeeeCCEEE-EeeCCCeEEEEEcCCCceeeeeeeeecC
Q 038537 195 FLY-SGSSDGS-INFWEKDKMSGGFNH-GGF-LQGHCFAVLCLVAIEKLIF-SGSEDTTIRVWRRAEGGCYHECLAVLDG 269 (358)
Q Consensus 195 ~l~-~~~~dg~-i~i~d~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 269 (358)
+++ +...++. |.+|++......... ... ..+....-.++++++++++ ++..++.|++||+.+++.. +.+..+..
T Consensus 141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~-~~~~~~~~ 219 (331)
T 3u4y_A 141 GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI-TLLNAVGT 219 (331)
T ss_dssp CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC-EEEEEEEC
T ss_pred EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc-ceeeeccC
Confidence 555 4455688 999998753211111 011 1122234467788898655 4557899999999987431 11444543
Q ss_pred cccceEEEEeecccceeeeCeEE-EEccCCCcEEEEEeee
Q 038537 270 HRGPVRCLAASLEMEKVVMGFLV-YSSSLDQTFKVWRVKV 308 (358)
Q Consensus 270 h~~~v~~i~~~~~~~~~~~~~~l-~s~~~dg~v~iw~~~~ 308 (358)
...+..++|+|+ +++| ++...++.|.+||+.+
T Consensus 220 -~~~~~~~~~spd------g~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 220 -NNLPGTIVVSRD------GSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp -SSCCCCEEECTT------SSEEEEECSSEEEEEEEETTT
T ss_pred -CCCCceEEECCC------CCEEEEEEcCCCEEEEEECCC
Confidence 356789999999 7755 5555688999999875
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=8.8e-20 Score=168.80 Aligned_cols=270 Identities=8% Similarity=0.055 Sum_probs=176.0
Q ss_pred EeeeCCCcEEEEeCCCceeeeeeeeccc---ceEEE--EecCCEEEEEeC---------CceEEEEeccccccccccccc
Q 038537 3 FTGSSSTRIRVWRQPDCVERGFIKARHG---EVRAI--LAHDNMLFTTNK---------DCKIRIWNFTVSDNFRTKKVT 68 (358)
Q Consensus 3 ~tg~~dg~v~vw~~~~~~~~~~~~~h~~---~v~~i--~~~~~~l~s~~~---------dg~i~iw~~~~~~~~~~~~~~ 68 (358)
+..+.||.|++||+.+++....+..|.. .+.++ ++++++|++++. ++.|++||+.+++......
T Consensus 30 ~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-- 107 (719)
T 1z68_A 30 LHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-- 107 (719)
T ss_dssp EEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC--
T ss_pred EEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee--
Confidence 3445699999999999998777776644 25555 457889988876 7899999998876521111
Q ss_pred ccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCe------------
Q 038537 69 TLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNV------------ 136 (358)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v------------ 136 (358)
....+..++|+|||+.|+.+. ++.|++|++.+++...+ ...++...|
T Consensus 108 -------------------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l-~~~~~~~~v~~g~~~~v~~ee 166 (719)
T 1z68_A 108 -------------------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI-TFNGRENKIFNGIPDWVYEEE 166 (719)
T ss_dssp -------------------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC-CCCCBTTTEEESSCCHHHHHH
T ss_pred -------------------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE-ecCCCcCCeEcccccceeeee
Confidence 113478899999999999885 78999999988763221 112222222
Q ss_pred -----EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEEceecCCc--ceee--e
Q 038537 137 -----NAIVVNQDDGFVFTCSSDG----------------------------------SVKIWRRVYRENS--HTLT--M 173 (358)
Q Consensus 137 -----~~~~~~~~~~~l~~~~~dg----------------------------------~i~~wd~~~~~~~--~~~~--~ 173 (358)
.+++|+|||+.|++++.|. .|++||+.++... ..+. .
T Consensus 167 ~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 246 (719)
T 1z68_A 167 MLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA 246 (719)
T ss_dssp TTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred cccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc
Confidence 4899999999999988652 7889998655421 0111 1
Q ss_pred eecccCCceeEEEEeecCCCcEEEEeecC----CcEEEEE----ccCCcCCccccceeecccce-------eEEEeeeCC
Q 038537 174 TLKFQQSSVNALALSSFFDNYFLYSGSSD----GSINFWE----KDKMSGGFNHGGFLQGHCFA-------VLCLVAIEK 238 (358)
Q Consensus 174 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 238 (358)
.+..+...+..++|+| ++.++++.... ..|.+|| ..++...........++... ...++++++
T Consensus 247 ~~~~~~~~~~~~~~Sp--D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 324 (719)
T 1z68_A 247 MIASSDYYFSWLTWVT--DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI 324 (719)
T ss_dssp HHHTSCEEEEEEEESS--SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred cCCCCcceEEEeEEeC--CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCC
Confidence 2335677889999999 77777664433 2488889 66533221110000223221 356889988
Q ss_pred EEEE--eeCCC--eEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccC----CCcEEEEEeee
Q 038537 239 LIFS--GSEDT--TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSL----DQTFKVWRVKV 308 (358)
Q Consensus 239 ~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~----dg~v~iw~~~~ 308 (358)
.|+. +..+| .|++||+.+++ ...+..+...+..+.++ ++ +.+++++.. ++..++|.+..
T Consensus 325 ~l~~~~~~~~g~~~l~~~~~~~~~-----~~~lt~~~~~v~~~~~~-d~-----~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 325 SYYKIFSDKDGYKHIHYIKDTVEN-----AIQITSGKWEAINIFRV-TQ-----DSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CEEEEEECTTSCEEEEEESSCSTT-----CEECSCSSSCEEEEEEE-CS-----SEEEEEESCGGGCTTCBEEEEEEC
T ss_pred eEEEEEEccCCceEEEEEECCCCc-----eEecccCceEEEEEEEE-eC-----CEEEEEEecCCCCCceEEEEEEeC
Confidence 5543 44555 57777877663 33444566678887777 51 344455544 58899999975
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=4.1e-18 Score=144.47 Aligned_cols=266 Identities=13% Similarity=0.176 Sum_probs=163.9
Q ss_pred EEeeeCC----CcEEEEeCCC--cee--eeeeeecccceEEEEecCCEEEEEe-CCceEEEEeccccccccccccc-ccC
Q 038537 2 VFTGSSS----TRIRVWRQPD--CVE--RGFIKARHGEVRAILAHDNMLFTTN-KDCKIRIWNFTVSDNFRTKKVT-TLP 71 (358)
Q Consensus 2 l~tg~~d----g~v~vw~~~~--~~~--~~~~~~h~~~v~~i~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~-~~~ 71 (358)
|++++.+ +.|.+|++.. ++. +.....+......+++++++|++++ .++.|.+|++.....+...... ...
T Consensus 64 l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 143 (361)
T 3scy_A 64 VYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFK 143 (361)
T ss_dssp EEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECC
T ss_pred EEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEcc
Confidence 5666664 7999998754 443 3333445556667777888777776 5889999999754433221100 000
Q ss_pred CCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe-cCCeEEEEEccCCcc----c---c----cccccccccCeEEE
Q 038537 72 RRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS-FDKTVKAWRVLDKRC----T---C----VDSFVAHESNVNAI 139 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~----~---~----~~~~~~~~~~v~~~ 139 (358)
. ........+...+.+++|+|++++|++++ .++.|.+|++..... . . ......+...+..+
T Consensus 144 g-------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 216 (361)
T 3scy_A 144 G-------SGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHL 216 (361)
T ss_dssp C-------CCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEE
T ss_pred C-------CCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEE
Confidence 0 00001123344578999999999776655 478999999875441 0 0 11112334567899
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEEceecCCccee-eeeecccCCceeEEEEeecCCCcEEEEeecC--CcEEEEEccCCcC
Q 038537 140 VVNQDDGFVFTCS-SDGSVKIWRRVYRENSHTL-TMTLKFQQSSVNALALSSFFDNYFLYSGSSD--GSINFWEKDKMSG 215 (358)
Q Consensus 140 ~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~ 215 (358)
+|+|+++++++++ .++.|.+||+.++...... ......+......++|+| ++++|+++..+ +.|.+|++.....
T Consensus 217 ~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~sp--dg~~l~v~~~~~~~~i~v~~~~~~~g 294 (361)
T 3scy_A 217 IFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSP--DGKYLYASNRLKADGVAIFKVDETNG 294 (361)
T ss_dssp EECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECT--TSSEEEEEECSSSCEEEEEEECTTTC
T ss_pred EEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECC--CCCEEEEECCCCCCEEEEEEEcCCCC
Confidence 9999999887777 5899999999744221111 111122234567899998 99988776654 8999999963222
Q ss_pred Cccccceee-cccceeEEEeeeCCEEEEee-CCCeEEEEEc--CCCceeeeeeeee-cCcccceEEEEee
Q 038537 216 GFNHGGFLQ-GHCFAVLCLVAIEKLIFSGS-EDTTIRVWRR--AEGGCYHECLAVL-DGHRGPVRCLAAS 280 (358)
Q Consensus 216 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~~~~~-~~h~~~v~~i~~~ 280 (358)
......... +....-.+++|++++|++++ .++.|.+|++ .+++. .... ..+...+.|+.|.
T Consensus 295 ~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~----~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 295 TLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLL----TDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCE----EECSCCEECSSEEEEEEE
T ss_pred cEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcE----eecceeeeCCCCeEEEEc
Confidence 222222222 22334467889999888877 6789999655 45532 2221 1244568888886
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=2.8e-18 Score=144.66 Aligned_cols=240 Identities=10% Similarity=0.098 Sum_probs=150.3
Q ss_pred CCcEEEEeCCCce--eeeeeeecccceEEEE--ecCCEEEEEe-CCceEEEEecccccccccccccccCCCceeeeecCC
Q 038537 8 STRIRVWRQPDCV--ERGFIKARHGEVRAIL--AHDNMLFTTN-KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82 (358)
Q Consensus 8 dg~v~vw~~~~~~--~~~~~~~h~~~v~~i~--~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
++.|++|++.+++ .+..+..+...+..++ +++++|++++ .++.|.+|++................. .+
T Consensus 62 ~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~------~p- 134 (347)
T 3hfq_A 62 EGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGH------GP- 134 (347)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCC------CS-
T ss_pred CceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCC------CC-
Confidence 6899999997665 3444455666666554 4688888887 789999999964322211110000000 00
Q ss_pred CccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEcc-CCcccccccccc-cccCeEEEEEcCCCCEEEE-EeCCCcEEE
Q 038537 83 NTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVL-DKRCTCVDSFVA-HESNVNAIVVNQDDGFVFT-CSSDGSVKI 159 (358)
Q Consensus 83 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~-~~~dg~i~~ 159 (358)
....+...+.+++|+|+++++++...++.|.+|++. +++......+.. ....+..++|+|+++++++ ...++.|.+
T Consensus 135 -~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v 213 (347)
T 3hfq_A 135 -RPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIAS 213 (347)
T ss_dssp -STTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred -CccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEE
Confidence 001234468899999999966666678899999998 454322222222 2336788999999996665 456889999
Q ss_pred EEceecCCcceeeeeecccC------CceeEEEEeecCCCcEE-EEeecCCcEEEEEccCCcCCccccceeecc--ccee
Q 038537 160 WRRVYRENSHTLTMTLKFQQ------SSVNALALSSFFDNYFL-YSGSSDGSINFWEKDKMSGGFNHGGFLQGH--CFAV 230 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--~~~~ 230 (358)
|++................. ..+..++|+| ++++| ++...++.|.+|++.... ..........+ ...-
T Consensus 214 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp--dG~~l~v~~~~~~~v~v~~~~~~g-~~~~~~~~~~~~~~~~~ 290 (347)
T 3hfq_A 214 LKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH--DGHFLYVSNRGYNTLAVFAVTADG-HLTLIQQISTEGDFPRD 290 (347)
T ss_dssp EEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT--TSCEEEEEEETTTEEEEEEECGGG-CEEEEEEEECSSSCCCE
T ss_pred EEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC--CCCEEEEEeCCCCEEEEEEECCCC-cEEEeEEEecCCCCcCe
Confidence 99874222212122221111 4578899998 89877 455568999999987421 12222223322 2344
Q ss_pred EEEeeeCCEEEEeeC-CCeEEEEEc--CCCc
Q 038537 231 LCLVAIEKLIFSGSE-DTTIRVWRR--AEGG 258 (358)
Q Consensus 231 ~~~~~~~~~l~~~~~-dg~i~iwd~--~~~~ 258 (358)
.+++|++++|++++. ++.|.+|++ .+++
T Consensus 291 ~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 291 FDLDPTEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred EEECCCCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 678899998888775 489999944 5553
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=3.7e-19 Score=160.60 Aligned_cols=251 Identities=8% Similarity=-0.021 Sum_probs=168.9
Q ss_pred EEeeeC-CCcEEEEeCCCceeeeeeeecccceEEEEecCC-EEEEEeC---CceEEEEeccc--ccccccccccccCCCc
Q 038537 2 VFTGSS-STRIRVWRQPDCVERGFIKARHGEVRAILAHDN-MLFTTNK---DCKIRIWNFTV--SDNFRTKKVTTLPRRS 74 (358)
Q Consensus 2 l~tg~~-dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~-~l~s~~~---dg~i~iw~~~~--~~~~~~~~~~~~~~~~ 74 (358)
||.++. ||+++||++.+++.......+...+..+.++++ .+++++. +....+|.++. ..... .+
T Consensus 36 la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~--~l------- 106 (582)
T 3o4h_A 36 LLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ--RL------- 106 (582)
T ss_dssp EEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE--EC-------
T ss_pred EEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc--cc-------
Confidence 566665 999999999777665444444468888887544 5555554 45567766553 21111 10
Q ss_pred eeeeecCCCccccCCCceEEEEEeCCCCE-EEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHAEGL-LYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS 153 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 153 (358)
. ....+...+|+|+++. +++.+.++.+.+||+.+++. . .+..+.. .+++|+|||+.|++++.
T Consensus 107 -----------~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~--~-~l~~~~~--~~~~~spDG~~la~~~~ 169 (582)
T 3o4h_A 107 -----------E-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGL--R-ELARLPG--FGFVSDIRGDLIAGLGF 169 (582)
T ss_dssp -----------T-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEE--E-EEEEESS--CEEEEEEETTEEEEEEE
T ss_pred -----------c-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcE--E-EeecCCC--ceEEECCCCCEEEEEEE
Confidence 0 1112345678888753 33334444556999988873 2 2222333 78999999999998887
Q ss_pred C----CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC--cEEEEEccCCcCCccccceeeccc
Q 038537 154 D----GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG--SINFWEKDKMSGGFNHGGFLQGHC 227 (358)
Q Consensus 154 d----g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~ 227 (358)
+ +.|++||+.+++. ..+..+...+..++|+| |++.|+++..++ .|++||+.++... ...++.
T Consensus 170 ~~~~~~~i~~~d~~~g~~-----~~l~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~ 237 (582)
T 3o4h_A 170 FGGGRVSLFTSNLSSGGL-----RVFDSGEGSFSSASISP--GMKVTAGLETAREARLVTVDPRDGSVE-----DLELPS 237 (582)
T ss_dssp EETTEEEEEEEETTTCCC-----EEECCSSCEEEEEEECT--TSCEEEEEECSSCEEEEEECTTTCCEE-----ECCCSC
T ss_pred cCCCCeEEEEEcCCCCCc-----eEeecCCCccccceECC--CCCEEEEccCCCeeEEEEEcCCCCcEE-----EccCCC
Confidence 7 7899999876542 23455677889999998 999999888888 8999999874322 223332
Q ss_pred cee----------EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccC
Q 038537 228 FAV----------LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSL 297 (358)
Q Consensus 228 ~~~----------~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~ 297 (358)
..+ .+++|++.++++++.||.+++|++ ++ ... .+.+.|.+++|+ + ++++++++.
T Consensus 238 ~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~----~~~---~~~~~v~~~~~s-d------g~~l~~~s~ 301 (582)
T 3o4h_A 238 KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GE----RVE---APQGNHGRVVLW-R------GKLVTSHTS 301 (582)
T ss_dssp SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TE----EEC---CCSSEEEEEEEE-T------TEEEEEEEE
T ss_pred cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CC----eec---cCCCceEEEEec-C------CEEEEEEcC
Confidence 221 238899989999999999999999 52 232 234678999999 7 788888887
Q ss_pred CCc---EEEEEe
Q 038537 298 DQT---FKVWRV 306 (358)
Q Consensus 298 dg~---v~iw~~ 306 (358)
+.. +.+|+.
T Consensus 302 ~~~p~~l~~~d~ 313 (582)
T 3o4h_A 302 LSTPPRIVSLPS 313 (582)
T ss_dssp TTEEEEEEEETT
T ss_pred CCCCCeEEEEcC
Confidence 754 555554
No 157
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=7.6e-19 Score=147.32 Aligned_cols=219 Identities=7% Similarity=0.011 Sum_probs=152.5
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecc-----cceEEEE--ecCCEEEEEe------------CCceEEEEeccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARH-----GEVRAIL--AHDNMLFTTN------------KDCKIRIWNFTVSDNF 62 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~-----~~v~~i~--~~~~~l~s~~------------~dg~i~iw~~~~~~~~ 62 (358)
+++++.++.|.+||+.+++.+..+.... ..+..+. ++++++++++ .++.|.+||+.+++..
T Consensus 49 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~ 128 (337)
T 1pby_B 49 YATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR 128 (337)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE
T ss_pred EEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEE
Confidence 4566678999999999988877665321 1344444 4677888886 5799999999876544
Q ss_pred ccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccc--cCeEEEE
Q 038537 63 RTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHE--SNVNAIV 140 (358)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~~~ 140 (358)
.... ....+.+++|+|++++|+++ ++.|.+||+.+++ ....+..+. .+ +.
T Consensus 129 ~~~~---------------------~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~--~~~~~~~~~~~~~---~~ 180 (337)
T 1pby_B 129 KAFE---------------------APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT--LVEDKPIQSWEAE---TY 180 (337)
T ss_dssp EEEE---------------------CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE--EEEEECSTTTTTT---TB
T ss_pred EEEe---------------------CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCc--EeeeeeccccCCC---ce
Confidence 3211 12346788999999988887 6889999998887 333333222 23 27
Q ss_pred EcCCCCEEEEEeCCC------------------------cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEE
Q 038537 141 VNQDDGFVFTCSSDG------------------------SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFL 196 (358)
Q Consensus 141 ~~~~~~~l~~~~~dg------------------------~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l 196 (358)
|+|++..++..+..+ .|.+||+.+++.. ......+...+..++++| +++++
T Consensus 181 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~~~~~~~~~s~--dg~~l 255 (337)
T 1pby_B 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA---MREVRIMDVFYFSTAVNP--AKTRA 255 (337)
T ss_dssp CCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE---EEEEEECSSCEEEEEECT--TSSEE
T ss_pred eCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce---EeecCCCCCceeeEEECC--CCCEE
Confidence 788888665554332 4688998765432 223344556788899998 99998
Q ss_pred EEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCc
Q 038537 197 YSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 197 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 258 (358)
+++ ++.|.+||+.+.+..... ..++.....++++++++|++++.++.|++||+.+++
T Consensus 256 ~~~--~~~v~~~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 256 FGA--YNVLESFDLEKNASIKRV---PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EEE--ESEEEEEETTTTEEEEEE---ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred EEe--CCeEEEEECCCCcCccee---cCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 888 789999999874321111 112333456778899999988999999999999884
No 158
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.82 E-value=1.7e-17 Score=140.18 Aligned_cols=268 Identities=9% Similarity=0.048 Sum_probs=177.5
Q ss_pred CCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEe----------CCceEEEEecccccccccccccccCCCcee
Q 038537 7 SSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTN----------KDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
.|+.|.+||..+++.+..+..+..+-.++++++++++++. .++.|.+||..+.+..........
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~------ 102 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNGHVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK------ 102 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEEEEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT------
T ss_pred ccCeEEEEECCCCeEEEEecCCCCCceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc------
Confidence 4789999999999988888777666334555788888876 367899999987665543322100
Q ss_pred eeecCCCccccCCCceEEEEEeCCCCEEEEEec--CCeEEEEEccCCccccccc-ccccccCeEEEEEcCCC-CEEEEEe
Q 038537 77 LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF--DKTVKAWRVLDKRCTCVDS-FVAHESNVNAIVVNQDD-GFVFTCS 152 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~ 152 (358)
...+......++++|+|++|+++.. ++.|.+||+.+++ .+.. +.. .....+.+.|++ ..+++.+
T Consensus 103 --------~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~--~~~~~i~~--~~~~~v~~~p~~~~~~~~~~ 170 (361)
T 2oiz_A 103 --------RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD--YVEDVTAA--AGCWSVIPQPNRPRSFMTIC 170 (361)
T ss_dssp --------BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE--EEEEEGGG--TTEEEEEECTTSSSEEEEEE
T ss_pred --------ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc--EEEEEecC--CCcceeEEcCCCCeeEEEEC
Confidence 0112344677999999999998874 5899999999887 4444 332 122335667765 6788889
Q ss_pred CCCcEEEEEceecCCcceee---eeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccc----c----
Q 038537 153 SDGSVKIWRRVYRENSHTLT---MTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG----G---- 221 (358)
Q Consensus 153 ~dg~i~~wd~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~---- 221 (358)
.||.+.+|++.......... ..+.....+ ..+...+ ++..++..+.++.+.++|+.......... .
T Consensus 171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~--~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPAL--DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp TTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEE--CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred CCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecc--cCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence 99999999885422211010 011111122 1223345 66677777788999999986532110000 0
Q ss_pred --eeecccceeEEEeeeCCEEEEeeC-----------CCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeee
Q 038537 222 --FLQGHCFAVLCLVAIEKLIFSGSE-----------DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVM 288 (358)
Q Consensus 222 --~~~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~ 288 (358)
...........++++++.++++.. .+.|.+||+.+. +.+..+..+. +.+++|+|+
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~----~~v~~i~~~~--p~~ia~spd------ 315 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK----QRVARIPGRD--ALSMTIDQQ------ 315 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT----EEEEEEECTT--CCEEEEETT------
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC----cEEEEEecCC--eeEEEECCC------
Confidence 000111223678888877776543 348999999998 5677777776 899999999
Q ss_pred CeEEEEccCCCcEEEEEeee
Q 038537 289 GFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 289 ~~~l~s~~~dg~v~iw~~~~ 308 (358)
|++|++++. +.|.+||..+
T Consensus 316 g~~l~v~n~-~~v~v~D~~t 334 (361)
T 2oiz_A 316 RNLMLTLDG-GNVNVYDISQ 334 (361)
T ss_dssp TTEEEEECS-SCEEEEECSS
T ss_pred CCEEEEeCC-CeEEEEECCC
Confidence 788888876 9999999874
No 159
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=1.3e-18 Score=156.94 Aligned_cols=228 Identities=7% Similarity=-0.039 Sum_probs=158.4
Q ss_pred ccceEEEE--ecCCEEEEEeC-CceEEEEecccccccccccccccCCCceeeeecCCCccccCC-CceEEEEEeCCCCEE
Q 038537 29 HGEVRAIL--AHDNMLFTTNK-DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHR-DCVSCMAFYHAEGLL 104 (358)
Q Consensus 29 ~~~v~~i~--~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l 104 (358)
..+|.++. +||+.|+.++. ||+++||++++++..+ +..|. ..+..++|+|+ +.+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~---------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK---------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE---------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe---------------------eecccccccccccCCCC-eEE
Confidence 44677664 58999998887 9999999986554321 12344 57999999999 777
Q ss_pred EEEec---CCeEEEEEccC--CcccccccccccccCeEEEEEcCCCCE-EEEEeCCCcEEEEEceecCCcceeeeeeccc
Q 038537 105 YTGSF---DKTVKAWRVLD--KRCTCVDSFVAHESNVNAIVVNQDDGF-VFTCSSDGSVKIWRRVYRENSHTLTMTLKFQ 178 (358)
Q Consensus 105 ~~~~~---dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 178 (358)
++++. +....+|.+.. .. ....+.. ...+...+|+|+++. +++...++.+.+||+.+++.. .... +
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g--~~~~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~----~l~~-~ 150 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPG--EEQRLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR----ELAR-L 150 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTT--CCEECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE----EEEE-E
T ss_pred EEeccCCCCcceEEEEEeccCCC--ccccccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE----Eeec-C
Confidence 77765 45566665543 22 1112222 223446678887753 344445555669999765321 1111 2
Q ss_pred CCceeEEEEeecCCCcEEEEeecC----CcEEEEEccCCcCCccccceeecccc--eeEEEeeeCCEEEEeeCCC--eEE
Q 038537 179 QSSVNALALSSFFDNYFLYSGSSD----GSINFWEKDKMSGGFNHGGFLQGHCF--AVLCLVAIEKLIFSGSEDT--TIR 250 (358)
Q Consensus 179 ~~~i~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg--~i~ 250 (358)
.. .+++|+| +|++|++++.+ +.|++||+.++... .+..+.. .-.+++|+|+.|+++..++ .|+
T Consensus 151 ~~--~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-----~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~ 221 (582)
T 3o4h_A 151 PG--FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-----VFDSGEGSFSSASISPGMKVTAGLETAREARLV 221 (582)
T ss_dssp SS--CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-----EECCSSCEEEEEEECTTSCEEEEEECSSCEEEE
T ss_pred CC--ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-----EeecCCCccccceECCCCCEEEEccCCCeeEEE
Confidence 22 7889999 99999988877 78999998874321 2344443 3467788999999888888 899
Q ss_pred EEEcCCCceeeeeeeeecCcccceEEEE--------eecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 251 VWRRAEGGCYHECLAVLDGHRGPVRCLA--------ASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 251 iwd~~~~~~~~~~~~~~~~h~~~v~~i~--------~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
+||+.+++ .. .+.+|...+..++ |+|+ |.++++++.||.+++|++
T Consensus 222 ~~d~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~spd------g~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 222 TVDPRDGS----VE-DLELPSKDFSSYRPTAITWLGYLPD------GRLAVVARREGRSAVFID 274 (582)
T ss_dssp EECTTTCC----EE-ECCCSCSHHHHHCCSEEEEEEECTT------SCEEEEEEETTEEEEEET
T ss_pred EEcCCCCc----EE-EccCCCcChhhhhhccccceeEcCC------CcEEEEEEcCCcEEEEEE
Confidence 99999884 33 6667777777777 9999 889999999999999998
No 160
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=2.9e-18 Score=158.81 Aligned_cols=256 Identities=7% Similarity=-0.036 Sum_probs=159.0
Q ss_pred CCcEEEEeCCCceeeeeee---ecccceEEE--EecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCC
Q 038537 8 STRIRVWRQPDCVERGFIK---ARHGEVRAI--LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~---~h~~~v~~i--~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
++.|.+||+.+++. ..+. .|...+..+ +++|+.|+.++. +.|++||+.+++...........
T Consensus 90 ~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~----------- 156 (723)
T 1xfd_A 90 TGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG----------- 156 (723)
T ss_dssp CSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTT-----------
T ss_pred eeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCC-----------
Confidence 37889999998875 2332 344445554 557889998886 79999999887654321110000
Q ss_pred CccccCC---------CceEEEEEeCCCCEEEEEecCC----------------------------------eEEEEEcc
Q 038537 83 NTQQQHR---------DCVSCMAFYHAEGLLYTGSFDK----------------------------------TVKAWRVL 119 (358)
Q Consensus 83 ~~~~~h~---------~~v~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~ 119 (358)
..+.++. ..+.+++|+|||+.|++++.|+ .|++||+.
T Consensus 157 ~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~ 236 (723)
T 1xfd_A 157 VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN 236 (723)
T ss_dssp TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS
T ss_pred ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC
Confidence 0001111 2348899999999999987653 79999998
Q ss_pred CCcccccccccc------cccCeEEEEEcCCCCEEEEEeCC----CcEEEEEceecCCcceeeeeecccCCce----eEE
Q 038537 120 DKRCTCVDSFVA------HESNVNAIVVNQDDGFVFTCSSD----GSVKIWRRVYRENSHTLTMTLKFQQSSV----NAL 185 (358)
Q Consensus 120 ~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~~i----~~~ 185 (358)
+++ ....+.. +...+..++|+||++++++.... ..|++||+.+++...... ..+...+ ..+
T Consensus 237 ~~~--~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~ 311 (723)
T 1xfd_A 237 GPT--HDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE---DESEAWLHRQNEEP 311 (723)
T ss_dssp SSC--CCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE---EECSSCCCCCCCCC
T ss_pred CCc--eeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE---eccCCEEeccCCCc
Confidence 876 2233333 36679999999999988776543 579999986654221111 1122333 378
Q ss_pred EEeecCCCcEEEE--eecCC------cEEEEEc-cCCcC--Cccccceeeccc--ceeEEEeeeCCEEEEeeCC---CeE
Q 038537 186 ALSSFFDNYFLYS--GSSDG------SINFWEK-DKMSG--GFNHGGFLQGHC--FAVLCLVAIEKLIFSGSED---TTI 249 (358)
Q Consensus 186 ~~~~~~~~~~l~~--~~~dg------~i~i~d~-~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d---g~i 249 (358)
+|+| +++.|+. +..++ .|.+||. ..... ...+ ..++. ..+.+++++++.|+..+.+ +.+
T Consensus 312 ~~sp--dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 386 (723)
T 1xfd_A 312 VFSK--DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI---TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRR 386 (723)
T ss_dssp EECT--TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS---CCSSSCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred eEcC--CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe---ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence 8998 8886664 45566 4666763 33210 1111 11221 1235788999988766544 789
Q ss_pred EEEEcCCCceeeeeeeeecC---cccceEEEEeecccceeeeCeEEEE
Q 038537 250 RVWRRAEGGCYHECLAVLDG---HRGPVRCLAASLEMEKVVMGFLVYS 294 (358)
Q Consensus 250 ~iwd~~~~~~~~~~~~~~~~---h~~~v~~i~~~~~~~~~~~~~~l~s 294 (358)
++|++..... .....+.. |...+..++|+|+ +++|+.
T Consensus 387 ~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~spd------g~~l~~ 426 (723)
T 1xfd_A 387 QLYSANTVGN--FNRQCLSCDLVENCTYFSASFSHS------MDFFLL 426 (723)
T ss_dssp EEEEECSSTT--CCCBCSSTTSSSSCCCCEEEECTT------SSEEEE
T ss_pred EEEEEeCCCC--CCcceecccccCCCCeEEEEECCC------CCEEEE
Confidence 9999875321 11223332 6677899999999 655554
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.80 E-value=5e-17 Score=150.61 Aligned_cols=269 Identities=9% Similarity=0.085 Sum_probs=171.6
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccc-----e--EEEEecCCEEEEEeCC---------ceEEEEecccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGE-----V--RAILAHDNMLFTTNKD---------CKIRIWNFTVSDNFRTK 65 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~-----v--~~i~~~~~~l~s~~~d---------g~i~iw~~~~~~~~~~~ 65 (358)
|+++ ||.|++||+.+++....+.+|... . .++++++++|+.++.+ +.+.+||+.+++...
T Consensus 31 ~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-- 106 (740)
T 4a5s_A 31 LYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-- 106 (740)
T ss_dssp EEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC--
T ss_pred EEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE--
Confidence 4554 899999999999988888877643 2 3557789999998876 567799999876432
Q ss_pred cccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCe---------
Q 038537 66 KVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNV--------- 136 (358)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v--------- 136 (358)
+..|...+...+|||||+.|+.+ .++.|++|++.+++...+ +..++...+
T Consensus 107 -------------------l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~l-t~~g~~~~~~~g~~~~v~ 165 (740)
T 4a5s_A 107 -------------------EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRI-TWTGKEDIIYNGITDWVY 165 (740)
T ss_dssp -------------------SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEEC-CSCCBTTTEEESBCCHHH
T ss_pred -------------------cccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEE-cCCCCccceecCcccccc
Confidence 24566779999999999999887 468999999988762221 222332222
Q ss_pred --------EEEEEcCCCCEEEEEeCCC------------------------------------cEEEEEcee---cCCcc
Q 038537 137 --------NAIVVNQDDGFVFTCSSDG------------------------------------SVKIWRRVY---RENSH 169 (358)
Q Consensus 137 --------~~~~~~~~~~~l~~~~~dg------------------------------------~i~~wd~~~---~~~~~ 169 (358)
..+.|+|||+.|+.++.|. .|++||+.+ ++...
T Consensus 166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~ 245 (740)
T 4a5s_A 166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245 (740)
T ss_dssp HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence 3589999999999876432 367777765 42111
Q ss_pred eeeeee----cccCCceeEEEEeecCCCcEEEEeec----CCcEEEEEccCCc----CCccccceeecccc-------ee
Q 038537 170 TLTMTL----KFQQSSVNALALSSFFDNYFLYSGSS----DGSINFWEKDKMS----GGFNHGGFLQGHCF-------AV 230 (358)
Q Consensus 170 ~~~~~~----~~~~~~i~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~~~~~~~~~~~~~-------~~ 230 (358)
...... ..+...+..++|+| +++.++.... +..|.+||+.++. ...........+.. .-
T Consensus 246 ~~~l~~~~~~~~~~~~~~~~~wsp--dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~ 323 (740)
T 4a5s_A 246 SIQITAPASMLIGDHYLCDVTWAT--QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSE 323 (740)
T ss_dssp EEEECCCHHHHTSCEEEEEEEEEE--TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCC
T ss_pred EEEecCCccCCCCCeEEEEEEEeC--CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCC
Confidence 111111 12667789999999 8886665533 3379999998754 11111100122221 13
Q ss_pred EEEeeeCCEEE-Eee-CC--CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccC----CCcEE
Q 038537 231 LCLVAIEKLIF-SGS-ED--TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSL----DQTFK 302 (358)
Q Consensus 231 ~~~~~~~~~l~-~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~----dg~v~ 302 (358)
..++|+|+.|+ ..+ .+ ..|++||..+++ .. .+......|..+.. +++ +.+++++.. .+...
T Consensus 324 p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~----~~-~lT~g~~~v~~~~~-~d~-----~~i~f~~~~~~~~~~~~~ 392 (740)
T 4a5s_A 324 PHFTLDGNSFYKIISNEEGYRHICYFQIDKKD----CT-FITKGTWEVIGIEA-LTS-----DYLYYISNEYKGMPGGRN 392 (740)
T ss_dssp CEECTTSSEEEEEEECTTSCEEEEEEETTCSS----CE-ESCCSSSCEEEEEE-ECS-----SEEEEEESCGGGCTTCBE
T ss_pred ceEcCCCCEEEEEEEcCCCceEEEEEECCCCc----eE-ecccCCEEEEEEEE-EeC-----CEEEEEEecCCCCCceeE
Confidence 46889998776 554 33 468888988763 22 33333455666542 331 456666655 35567
Q ss_pred EEEeee
Q 038537 303 VWRVKV 308 (358)
Q Consensus 303 iw~~~~ 308 (358)
||.+..
T Consensus 393 ly~v~~ 398 (740)
T 4a5s_A 393 LYKIQL 398 (740)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 776653
No 162
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=2.5e-17 Score=141.04 Aligned_cols=264 Identities=10% Similarity=0.017 Sum_probs=172.2
Q ss_pred EEeeeC-CC--cEEEEeCCCceeeeeeeecccceE--EEEecCCEEEEEeCCceEEEEecccccccccccccccCCCcee
Q 038537 2 VFTGSS-ST--RIRVWRQPDCVERGFIKARHGEVR--AILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSF 76 (358)
Q Consensus 2 l~tg~~-dg--~v~vw~~~~~~~~~~~~~h~~~v~--~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
|+.++. +| .|.+||+.+++......++...+. .++++++.|+.++.++.|++||+.+++.....
T Consensus 50 l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~----------- 118 (388)
T 3pe7_A 50 LLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVY----------- 118 (388)
T ss_dssp EEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEE-----------
T ss_pred EEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeee-----------
Confidence 455555 66 488889999988877777766553 56778999999999999999999987643211
Q ss_pred eeecCCCccccCCCceEEE--EEeCCCCEEEEE----------------------ecCCeEEEEEccCCccccccccccc
Q 038537 77 LSFSKSNTQQQHRDCVSCM--AFYHAEGLLYTG----------------------SFDKTVKAWRVLDKRCTCVDSFVAH 132 (358)
Q Consensus 77 ~~~~~~~~~~~h~~~v~~~--~~~~~~~~l~~~----------------------~~dg~i~iwd~~~~~~~~~~~~~~~ 132 (358)
..+...+... .++|++..++.. ..+..|.+||+.+++ ...+..+
T Consensus 119 ---------~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~l~~~ 186 (388)
T 3pe7_A 119 ---------QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---STVILQE 186 (388)
T ss_dssp ---------ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC---EEEEEEE
T ss_pred ---------echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc---eEEeecC
Confidence 1223333333 347888887742 244789999998886 3334456
Q ss_pred ccCeEEEEEcC-CCCEEEEEeCC------CcEEEEEceecCCcceeeeeecccC--CceeEEEEeecCCCcEEEEeec-C
Q 038537 133 ESNVNAIVVNQ-DDGFVFTCSSD------GSVKIWRRVYRENSHTLTMTLKFQQ--SSVNALALSSFFDNYFLYSGSS-D 202 (358)
Q Consensus 133 ~~~v~~~~~~~-~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~l~~~~~-d 202 (358)
...+..+.|+| +++.|+.+..+ ..|.++|+..+.. .. +..+. ..+...+|+| +++.|+..+. +
T Consensus 187 ~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~----l~~~~~~~~~~~~~~sp--dg~~l~~~~~~~ 259 (388)
T 3pe7_A 187 NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RK----VKTHAEGESCTHEFWVP--DGSALVYVSYLK 259 (388)
T ss_dssp SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EE----SCCCCTTEEEEEEEECT--TSSCEEEEEEET
T ss_pred CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EE----eeeCCCCcccccceECC--CCCEEEEEecCC
Confidence 67799999999 99988887764 3677777643321 11 11122 3567788998 8887755443 2
Q ss_pred C----cEEEEEccCCcCCccccceeeccc-----ceeEEEeeeCCEEEEe---------eCCCeEEEEEcCCCceeeeee
Q 038537 203 G----SINFWEKDKMSGGFNHGGFLQGHC-----FAVLCLVAIEKLIFSG---------SEDTTIRVWRRAEGGCYHECL 264 (358)
Q Consensus 203 g----~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~---------~~dg~i~iwd~~~~~~~~~~~ 264 (358)
+ .|++||+.++.. .......++. ..-..++|+++.|+.. ..+..|++||+.+++.
T Consensus 260 ~~~~~~l~~~d~~~g~~--~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----- 332 (388)
T 3pe7_A 260 GSPDRFIYSADPETLEN--RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ----- 332 (388)
T ss_dssp TCCCEEEEEECTTTCCE--EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-----
T ss_pred CCCcceEEEEecCCCce--EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-----
Confidence 2 399999987432 1111111110 1112688999877753 4567899999998742
Q ss_pred eeecCccc-----------ceEEEEeecccceeeeCeEEE-EccCCCcEEEEEeee
Q 038537 265 AVLDGHRG-----------PVRCLAASLEMEKVVMGFLVY-SSSLDQTFKVWRVKV 308 (358)
Q Consensus 265 ~~~~~h~~-----------~v~~i~~~~~~~~~~~~~~l~-s~~~dg~v~iw~~~~ 308 (358)
..+..|.. .+..++|+|+ |+.|+ ++..+|...||.++.
T Consensus 333 ~~l~~~~~~~~~~~~~~~~~~~~~~~spD------g~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 333 HRVARHDTSWKVFEGDRQVTHPHPSFTPD------DKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp EEEEECCCCCCCBTTBSSTTCCCCEECTT------SSEEEEEECTTSSCEEEEEEC
T ss_pred EEeccccCcccccccccccCCCCccCCCC------CCEEEEEecCCCceeEEEEEC
Confidence 23334444 5788999999 65555 455688888888764
No 163
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.79 E-value=2.6e-16 Score=131.50 Aligned_cols=244 Identities=12% Similarity=0.059 Sum_probs=163.4
Q ss_pred cceEEEEe--cCCEEEEEeCC------------------------ceEEEEecccccccccccccccCCCceeeeecCCC
Q 038537 30 GEVRAILA--HDNMLFTTNKD------------------------CKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSN 83 (358)
Q Consensus 30 ~~v~~i~~--~~~~l~s~~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
+.+.++++ +++++++...+ +.|.+||..+++......
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~----------------- 86 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG----------------- 86 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-----------------
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-----------------
Confidence 45777766 46677777766 468888887665532111
Q ss_pred ccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccc---------cccccCeEEEEEcC-CCCEEEEEe-
Q 038537 84 TQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF---------VAHESNVNAIVVNQ-DDGFVFTCS- 152 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~- 152 (358)
.++-.....++++|+++++++...++.|++||..... ..+..+ ..+-.....++++| ++.++++.+
T Consensus 87 --~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~-~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~ 163 (329)
T 3fvz_A 87 --KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE-GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY 163 (329)
T ss_dssp --TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS-CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred --CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe-EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence 2344568899999999988888889999999986542 122222 23344689999999 788888876
Q ss_pred CCCcEEEEEceecCCcceeeeee------cccCCceeEEEEeecCC-CcEEEEeecCCcEEEEEccCCcCCccccceeec
Q 038537 153 SDGSVKIWRRVYRENSHTLTMTL------KFQQSSVNALALSSFFD-NYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG 225 (358)
Q Consensus 153 ~dg~i~~wd~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 225 (358)
.++.|++||. .+.....+...- ..+-.....++++| + +.++++...++.|++||..++....... ...
T Consensus 164 ~~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~--~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~--~~~ 238 (329)
T 3fvz_A 164 CNSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVP--HLDQLCVADRENGRIQCFKTDTKEFVREIK--HAS 238 (329)
T ss_dssp SCCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEET--TTTEEEEEETTTTEEEEEETTTCCEEEEEC--CTT
T ss_pred CCCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEEC--CCCEEEEEECCCCEEEEEECCCCcEEEEEe--ccc
Confidence 6899999984 222111111100 11223478999998 7 7777888889999999987532211110 011
Q ss_pred cccee--EEEee------eCCEEEEeeCCCeEEEEEcCCCceeeeeeeee---cCcccceEEEEeecccceeeeCeEEEE
Q 038537 226 HCFAV--LCLVA------IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVL---DGHRGPVRCLAASLEMEKVVMGFLVYS 294 (358)
Q Consensus 226 ~~~~~--~~~~~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~h~~~v~~i~~~~~~~~~~~~~~l~s 294 (358)
+...+ .+++| +++..++...+..|++||..+++ .+..+ .++.....+|+++|+ |.++++
T Consensus 239 ~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~----~~~~~~~~~~~~~~p~~ia~~~d------G~lyva 308 (329)
T 3fvz_A 239 FGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGE----IIDVFKPVRKHFDMPHDIVASED------GTVYIG 308 (329)
T ss_dssp TTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCC----EEEEECCSSSCCSSEEEEEECTT------SEEEEE
T ss_pred cCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCe----EEEEEcCCCCccCCeeEEEECCC------CCEEEE
Confidence 22222 33344 44444445566789999999884 45554 467778999999999 889999
Q ss_pred ccCCCcEEEEEeee
Q 038537 295 SSLDQTFKVWRVKV 308 (358)
Q Consensus 295 ~~~dg~v~iw~~~~ 308 (358)
...++.|++|++..
T Consensus 309 d~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 309 DAHTNTVWKFTLTE 322 (329)
T ss_dssp ESSSCCEEEEEEEE
T ss_pred ECCCCEEEEEeCCc
Confidence 99999999999975
No 164
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.78 E-value=1.3e-16 Score=146.34 Aligned_cols=266 Identities=10% Similarity=-0.011 Sum_probs=168.5
Q ss_pred eCCCcEEEEeCCCceeeeeeeecccceE---------E--EE--ecCCE-EEEEeC-CceEEEEecc--c-ccccccccc
Q 038537 6 SSSTRIRVWRQPDCVERGFIKARHGEVR---------A--IL--AHDNM-LFTTNK-DCKIRIWNFT--V-SDNFRTKKV 67 (358)
Q Consensus 6 ~~dg~v~vw~~~~~~~~~~~~~h~~~v~---------~--i~--~~~~~-l~s~~~-dg~i~iw~~~--~-~~~~~~~~~ 67 (358)
+.++...||....+.....+..|...+. . .+ ++++. |+.++. +..|.++++. + +..... .
T Consensus 44 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l-~- 121 (662)
T 3azo_A 44 AEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPL-T- 121 (662)
T ss_dssp TTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEEC-S-
T ss_pred ccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEec-c-
Confidence 5578899998544444455555554433 2 33 67887 665543 5667666665 2 322110 0
Q ss_pred cccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecC----------CeEEEEEccC------Cccccccccc-
Q 038537 68 TTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD----------KTVKAWRVLD------KRCTCVDSFV- 130 (358)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~------~~~~~~~~~~- 130 (358)
.. ....|...+..++|+|+|+.|++++.+ ..|++||+.+ ++ ...+.
T Consensus 122 -~~-------------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~l~~ 184 (662)
T 3azo_A 122 -PV-------------SAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA---VRELSD 184 (662)
T ss_dssp -CC-------------CCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG---SEESSC
T ss_pred -CC-------------ccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc---eeEEEe
Confidence 00 001156678999999999999998877 5899999987 54 33344
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCC--------cEEEEEce-ecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec
Q 038537 131 AHESNVNAIVVNQDDGFVFTCSSDG--------SVKIWRRV-YRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS 201 (358)
Q Consensus 131 ~~~~~v~~~~~~~~~~~l~~~~~dg--------~i~~wd~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 201 (358)
.+...+..++|+|||+.|+.++.++ .|++||+. ++. ..........+...+..+.|+| ++++++++..
T Consensus 185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~-~~~~~~l~~~~~~~~~~~~~sp--dg~l~~~~~~ 261 (662)
T 3azo_A 185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR-FADTRTLLGGPEEAIAQAEWAP--DGSLIVATDR 261 (662)
T ss_dssp SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC-EEEEEEEEEETTBCEEEEEECT--TSCEEEEECT
T ss_pred cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc-ccccEEeCCCCCceEcceEECC--CCeEEEEECC
Confidence 4556788899999999999887553 79999986 231 1122222334467889999998 8888888888
Q ss_pred CC--cEEEEEccCCcCCccccceeeccc--------ceeEEEeeeCCEEEEeeCCCeEEEE--EcCCCceeeeeeeeecC
Q 038537 202 DG--SINFWEKDKMSGGFNHGGFLQGHC--------FAVLCLVAIEKLIFSGSEDTTIRVW--RRAEGGCYHECLAVLDG 269 (358)
Q Consensus 202 dg--~i~i~d~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~ 269 (358)
++ .|.+||+.+.... .... ..... ....++++++.+++++.. +.++|| |+.++ + +..+..
T Consensus 262 ~~~~~l~~~~~~~~~~~-~l~~-~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~----~-~~~l~~ 333 (662)
T 3azo_A 262 TGWWNLHRVDPATGAAT-QLCR-REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG----E-LVDAAG 333 (662)
T ss_dssp TSSCEEEEECTTTCCEE-ESSC-CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT----E-EEECCS
T ss_pred CCCeEEEEEECCCCcee-eccc-ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC----c-EEEecC
Confidence 88 5666665442211 1100 00000 123566678899999988 999999 55554 2 456667
Q ss_pred cccceEEE-EeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 270 HRGPVRCL-AASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 270 h~~~v~~i-~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
|...+..+ +++++ ..++++++.+....+|.+.
T Consensus 334 ~~~~~~~~~s~~~~------~~~~~~~~~~~~~~i~~~d 366 (662)
T 3azo_A 334 PWTEWAATLTVSGT------RAVGVAASPRTAYEVVELD 366 (662)
T ss_dssp SCCEEEEEEEEETT------EEEEEEEETTEEEEEEEEE
T ss_pred CCCeEEEEEecCCC------EEEEEEcCCCCCCEEEEEE
Confidence 77778777 55443 4456666677666677654
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.76 E-value=1.6e-15 Score=124.12 Aligned_cols=241 Identities=9% Similarity=0.115 Sum_probs=158.2
Q ss_pred cccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEe-CCCCEE
Q 038537 28 RHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFY-HAEGLL 104 (358)
Q Consensus 28 h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l 104 (358)
+-....++++ +++++++...++.|.+||.. ++........ ....++...+..+++. +++.++
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~--------------~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGEC--------------GKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCB--------------SSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEeccc--------------CCCcccccCceEEEEEcCCCeEE
Confidence 3345667766 46677777889999999977 3332211110 0112455668999995 667666
Q ss_pred EEEec-CCeEEEEEccCCccccccccc-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCce
Q 038537 105 YTGSF-DKTVKAWRVLDKRCTCVDSFV-AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSV 182 (358)
Q Consensus 105 ~~~~~-dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i 182 (358)
++... ++.|.+||. +++ .+..+. .+...+.+++++|+++++++...++.|.+||.. +..... .....+...+
T Consensus 93 v~~~~~~~~i~~~d~-~g~--~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~--~~~~~~~~~p 166 (286)
T 1q7f_A 93 VTERSPTHQIQIYNQ-YGQ--FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHK--FGCSKHLEFP 166 (286)
T ss_dssp EEECGGGCEEEEECT-TSC--EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE--EECTTTCSSE
T ss_pred EEcCCCCCEEEEECC-CCc--EEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEE--eCCCCccCCc
Confidence 66543 889999994 444 333332 234578999999999988887788999999853 211111 1111234568
Q ss_pred eEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceee--cc--cceeEEEeeeCCEEEEeeCCC-eEEEEEcCCC
Q 038537 183 NALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ--GH--CFAVLCLVAIEKLIFSGSEDT-TIRVWRRAEG 257 (358)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~ 257 (358)
..+++++ +++++++...++.|++||.... ....+. ++ ...-++++++++++++...++ .|.+||....
T Consensus 167 ~~i~~~~--~g~l~v~~~~~~~i~~~~~~g~-----~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~ 239 (286)
T 1q7f_A 167 NGVVVND--KQEIFISDNRAHCVKVFNYEGQ-----YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ 239 (286)
T ss_dssp EEEEECS--SSEEEEEEGGGTEEEEEETTCC-----EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred EEEEECC--CCCEEEEECCCCEEEEEcCCCC-----EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC
Confidence 8999998 8888888788999999997541 111121 11 122356677888888887776 9999996532
Q ss_pred ceeeeeeeeecCc--ccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 258 GCYHECLAVLDGH--RGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 258 ~~~~~~~~~~~~h--~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.+..+..+ ...+.+++++|+ |+++++ +.|+.|++|++..
T Consensus 240 -----~~~~~~~~~~~~~~~~i~~~~~------g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 240 -----LISALESKVKHAQCFDVALMDD------GSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp -----EEEEEEESSCCSCEEEEEEETT------TEEEEE-ETTTEEEEEECSC
T ss_pred -----EEEEEcccCCCCcceeEEECCC------CcEEEE-CCCCeEEEEEccc
Confidence 33333333 234789999999 877777 5699999999864
No 166
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.76 E-value=1.2e-16 Score=147.76 Aligned_cols=272 Identities=10% Similarity=0.017 Sum_probs=162.2
Q ss_pred CCcEEEEeCCCceee--eeeeecccceE--EEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCC
Q 038537 8 STRIRVWRQPDCVER--GFIKARHGEVR--AILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSN 83 (358)
Q Consensus 8 dg~v~vw~~~~~~~~--~~~~~h~~~v~--~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
++.|++||+.+++.+ ..+. ..+. +++++|+.|+.+. ++.|++|++.+++........ .. ..
T Consensus 89 ~~~i~~~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~---~~--------~~ 153 (719)
T 1z68_A 89 TATYYIYDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNG---RE--------NK 153 (719)
T ss_dssp EEEEEEEETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCC---BT--------TT
T ss_pred ceEEEEEECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCC---Cc--------CC
Confidence 789999999988762 2222 3344 4456888998886 789999999877653211100 00 00
Q ss_pred ccccCCCce---------EEEEEeCCCCEEEEEecCC----------------------------------eEEEEEccC
Q 038537 84 TQQQHRDCV---------SCMAFYHAEGLLYTGSFDK----------------------------------TVKAWRVLD 120 (358)
Q Consensus 84 ~~~~h~~~v---------~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd~~~ 120 (358)
.+.+|...| .+++|+|||+.|++++.|. .|++||+.+
T Consensus 154 v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~ 233 (719)
T 1z68_A 154 IFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTY 233 (719)
T ss_dssp EEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSC
T ss_pred eEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCC
Confidence 112333222 5899999999999987652 789999988
Q ss_pred Cccc---cc---ccccccccCeEEEEEcCCCCEEEEEeCCC----cEEEEE----ceecCCcceeeeeecccCCcee---
Q 038537 121 KRCT---CV---DSFVAHESNVNAIVVNQDDGFVFTCSSDG----SVKIWR----RVYRENSHTLTMTLKFQQSSVN--- 183 (358)
Q Consensus 121 ~~~~---~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~wd----~~~~~~~~~~~~~~~~~~~~i~--- 183 (358)
++.. .+ ..+..|...+..++|+||++++++....+ .|.+|| +.+++...........+...+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 313 (719)
T 1z68_A 234 PAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFF 313 (719)
T ss_dssp HHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSS
T ss_pred CCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEcccc
Confidence 7621 11 23446788899999999987776644332 488888 6544322211100134555565
Q ss_pred --EEEEeecCCCcEEEE--eecCC--cEEEEEccCCcCCccccceeeccccee--EEEeeeCCEEEEeeCC-----CeEE
Q 038537 184 --ALALSSFFDNYFLYS--GSSDG--SINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSED-----TTIR 250 (358)
Q Consensus 184 --~~~~~~~~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d-----g~i~ 250 (358)
.+.|+| +++.++. +..+| .|.+||+.... ...+..+...+ ..+. +++.|+..+.+ +..+
T Consensus 314 ~~~~~~sp--dg~~l~~~~~~~~g~~~l~~~~~~~~~-----~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~ 385 (719)
T 1z68_A 314 VSTPVFSY--DAISYYKIFSDKDGYKHIHYIKDTVEN-----AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRN 385 (719)
T ss_dssp CCCCEECT--TSSCEEEEEECTTSCEEEEEESSCSTT-----CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBE
T ss_pred CCccEECC--CCCeEEEEEEccCCceEEEEEECCCCc-----eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEE
Confidence 788998 8875543 44555 46666665522 11122222222 2223 66666655544 7888
Q ss_pred EEEcCC--Cceeeeeee-eecCcccceEEEEeecccceeeeCeEEE-EccCC--CcEEEEEeee
Q 038537 251 VWRRAE--GGCYHECLA-VLDGHRGPVRCLAASLEMEKVVMGFLVY-SSSLD--QTFKVWRVKV 308 (358)
Q Consensus 251 iwd~~~--~~~~~~~~~-~~~~h~~~v~~i~~~~~~~~~~~~~~l~-s~~~d--g~v~iw~~~~ 308 (358)
+|.+.. +....+.+. .+.+|...+..+.|+|+ +++++ +++.+ ..+.+||+.+
T Consensus 386 l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~d------g~~l~~~~s~~~~p~~~l~d~~~ 443 (719)
T 1z68_A 386 IYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDY------AKYYALVCYGPGIPISTLHDGRT 443 (719)
T ss_dssp EEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGG------GSSEEEEECCBSSCEEEEECSSS
T ss_pred EEEEeCCCCCCCceeccCccCCCCCceEEEEECCC------CCEEEEEcCCCCCCeEEEEECCC
Confidence 888764 311011111 12336677889999998 44444 44444 4677887643
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=7.7e-16 Score=130.58 Aligned_cols=236 Identities=8% Similarity=0.057 Sum_probs=148.7
Q ss_pred EEeeeCCCcEEEEeCC-Cceeeeeeeec-ccceEEE--EecCCE--EEEEe-------------CCceEEEEeccc-ccc
Q 038537 2 VFTGSSSTRIRVWRQP-DCVERGFIKAR-HGEVRAI--LAHDNM--LFTTN-------------KDCKIRIWNFTV-SDN 61 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~-~~~~~~~~~~h-~~~v~~i--~~~~~~--l~s~~-------------~dg~i~iw~~~~-~~~ 61 (358)
|++++.+ .|.+|++. +++........ .+....+ ++++++ ++++. .+|.+.+|++.. ++.
T Consensus 54 l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~ 132 (365)
T 1jof_A 54 IYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKL 132 (365)
T ss_dssp EEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCE
T ss_pred EEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcC
Confidence 6677777 89999987 77664433211 1223333 446774 45553 689999999974 332
Q ss_pred cccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec-CCeEEEEEcc-CCccccccccc--ccccCeE
Q 038537 62 FRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF-DKTVKAWRVL-DKRCTCVDSFV--AHESNVN 137 (358)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~-~~~~~~~~~~~--~~~~~v~ 137 (358)
....... ...+...+.+++|+|+|++|++++. ++.|++|++. +++...+..+. .|...+.
T Consensus 133 ~~~~~~~----------------~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 133 EKNVQNY----------------EYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp EEEEEEE----------------ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred cceEeeE----------------EeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 2111100 0124566899999999998887764 6799999998 66633333332 2356789
Q ss_pred EEEEcCCCCEEEEEeC-CCcEEEEEcee--cCCcc--eeeeeec----ccCC------ceeEEE-EeecCCCcEEEEeec
Q 038537 138 AIVVNQDDGFVFTCSS-DGSVKIWRRVY--RENSH--TLTMTLK----FQQS------SVNALA-LSSFFDNYFLYSGSS 201 (358)
Q Consensus 138 ~~~~~~~~~~l~~~~~-dg~i~~wd~~~--~~~~~--~~~~~~~----~~~~------~i~~~~-~~~~~~~~~l~~~~~ 201 (358)
.++|+|+++++++++. ++.|.+|++.. ++... .....+. ++.. .+..++ |+| ++++|+++..
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp--dG~~l~v~~~ 274 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF--SGKYMFASSR 274 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT--TSSEEEEEEE
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC--CCCEEEEECC
Confidence 9999999999888775 68999998753 22110 0111111 1122 578899 998 9988887765
Q ss_pred CC------cEEEEEccCCcCCccccc-eee--cccceeEEEee---eCCEEEEeeCC-CeEEEEEcCCC
Q 038537 202 DG------SINFWEKDKMSGGFNHGG-FLQ--GHCFAVLCLVA---IEKLIFSGSED-TTIRVWRRAEG 257 (358)
Q Consensus 202 dg------~i~i~d~~~~~~~~~~~~-~~~--~~~~~~~~~~~---~~~~l~~~~~d-g~i~iwd~~~~ 257 (358)
+. .|.+|++... ....... ... +....-.+++| ++++|++++.+ +.|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~-g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDC-GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTT-SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCC-CCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 33 8999998631 1111100 111 11223467788 79999988764 89999998765
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=2.5e-16 Score=145.95 Aligned_cols=244 Identities=9% Similarity=0.017 Sum_probs=150.9
Q ss_pred eEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec
Q 038537 32 VRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF 109 (358)
Q Consensus 32 v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 109 (358)
...+.| ++.+++++ ||.|++||+.+++........ ....+......++|||||++|+.++.
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~Spdg~~l~~~~~ 81 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENS---------------TFDEFGHSINDYSISPDGQFILLEYN 81 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTT---------------TTTTCCSCCCEEEECTTSSEEEEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEech---------------hhhhhcccccceEECCCCCEEEEEEC
Confidence 334554 56677775 999999999988753221110 01122223355889999999999887
Q ss_pred C---------CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccC-
Q 038537 110 D---------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ- 179 (358)
Q Consensus 110 d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~- 179 (358)
+ +.+.+||+.+++ ...+..+...+...+|+|||+.|+.+ .++.|++||+.++... .+ ...++.
T Consensus 82 ~~~~~r~~~~~~~~~~d~~~~~---~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~-~l--t~~g~~~ 154 (740)
T 4a5s_A 82 YVKQWRHSYTASYDIYDLNKRQ---LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSY-RI--TWTGKED 154 (740)
T ss_dssp EEECSSSCEEEEEEEEETTTTE---ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCE-EC--CSCCBTT
T ss_pred CeeeEEEccceEEEEEECCCCc---EEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceE-EE--cCCCCcc
Confidence 6 566799999987 33455677889999999999999887 4789999998665421 11 111111
Q ss_pred ----------------CceeEEEEeecCCCcEEEEeecCC------------------------------------cEEE
Q 038537 180 ----------------SSVNALALSSFFDNYFLYSGSSDG------------------------------------SINF 207 (358)
Q Consensus 180 ----------------~~i~~~~~~~~~~~~~l~~~~~dg------------------------------------~i~i 207 (358)
.....+.|+| ||+.|+.++.|. .|++
T Consensus 155 ~~~~g~~~~v~~ee~~~~~~~~~wSp--Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v 232 (740)
T 4a5s_A 155 IIYNGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV 232 (740)
T ss_dssp TEEESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred ceecCcccccccchhcCCCcceEECC--CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence 1224588998 999999876432 3677
Q ss_pred EEccC---CcC--Cccccc--eeeccccee--EEEeeeCCEEEEee----CCCeEEEEEcCCCceee--eeeeee--cCc
Q 038537 208 WEKDK---MSG--GFNHGG--FLQGHCFAV--LCLVAIEKLIFSGS----EDTTIRVWRRAEGGCYH--ECLAVL--DGH 270 (358)
Q Consensus 208 ~d~~~---~~~--~~~~~~--~~~~~~~~~--~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~--~~~~~~--~~h 270 (358)
||+.+ +.. ...... ...++...+ ..++|+++.++... .+..|++||+.+++... ..+..+ .+|
T Consensus 233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~ 312 (740)
T 4a5s_A 233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST 312 (740)
T ss_dssp EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence 77765 321 001100 000133333 56788988666543 33479999999885100 111111 345
Q ss_pred ccceE-----EEEeecccceeeeCeEEE-Ecc-CCC--cEEEEEee
Q 038537 271 RGPVR-----CLAASLEMEKVVMGFLVY-SSS-LDQ--TFKVWRVK 307 (358)
Q Consensus 271 ~~~v~-----~i~~~~~~~~~~~~~~l~-s~~-~dg--~v~iw~~~ 307 (358)
...|. ...|+|+ |+.|+ ..+ .+| .|.+||+.
T Consensus 313 ~~~v~~~~~~~p~fspD------G~~l~~~~s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 313 TGWVGRFRPSEPHFTLD------GNSFYKIISNEEGYRHICYFQID 352 (740)
T ss_dssp SSCSSSSSCCCCEECTT------SSEEEEEEECTTSCEEEEEEETT
T ss_pred CceEccCcCCCceEcCC------CCEEEEEEEcCCCceEEEEEECC
Confidence 55544 7889999 66655 444 455 46666654
No 169
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.73 E-value=3.7e-16 Score=131.62 Aligned_cols=234 Identities=7% Similarity=-0.031 Sum_probs=141.4
Q ss_pred EecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEE-EEecCCeEE
Q 038537 36 LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLY-TGSFDKTVK 114 (358)
Q Consensus 36 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~~dg~i~ 114 (358)
..++.++++++.++.|.+||+.+++....... +....+..++|+|+++.++ ++..++.|.
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-------------------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~ 68 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM-------------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIY 68 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEEC-------------------SSCCSSCEEEECTTSSEEEEEETTTTEEE
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEEec-------------------CCCCCCceeEECCCCCEEEEEeCCCCcEE
Confidence 33567889999999999999988765432211 1112467899999998665 555789999
Q ss_pred EEEccCCccccccccccc------ccCeEEEEEcCCCCEEEEEeCC------------CcEEEEEceecCCcceeeeeec
Q 038537 115 AWRVLDKRCTCVDSFVAH------ESNVNAIVVNQDDGFVFTCSSD------------GSVKIWRRVYRENSHTLTMTLK 176 (358)
Q Consensus 115 iwd~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d------------g~i~~wd~~~~~~~~~~~~~~~ 176 (358)
+||+.+++ ....+... ...+..++|+|+++++++++.+ +.|.+||+.+++..... ....
T Consensus 69 ~~d~~t~~--~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~ 145 (349)
T 1jmx_B 69 GIDLDTCK--NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV-RTFP 145 (349)
T ss_dssp EEETTTTE--EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS-EEEE
T ss_pred EEeCCCCc--EEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee-eecc
Confidence 99998877 33333321 2337889999999999998865 89999999765422211 1122
Q ss_pred ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecc----------------cc----ee--EEEe
Q 038537 177 FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGH----------------CF----AV--LCLV 234 (358)
Q Consensus 177 ~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----------------~~----~~--~~~~ 234 (358)
+...+.+++|+| +++ +++++. .|.+||+.+.+..........+. .. .. ..+.
T Consensus 146 -~~~~~~~~~~s~--dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (349)
T 1jmx_B 146 -MPRQVYLMRAAD--DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 219 (349)
T ss_dssp -CCSSCCCEEECT--TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred -CCCcccceeECC--CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec
Confidence 234688999998 888 555443 49999987743211110000000 00 00 1122
Q ss_pred eeCCEEEE-eeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeec-ccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 235 AIEKLIFS-GSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASL-EMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 235 ~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+++..... ......+..+|..+++. ....+..+...+.+++|+| + +++++++ ++.|.+||+..
T Consensus 220 ~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~sp~d------g~~l~~~--~~~v~~~d~~~ 284 (349)
T 1jmx_B 220 KDDKQDPATADLLYGYLSVDLKTGKT---HTQEFADLTELYFTGLRSPKD------PNQIYGV--LNRLAKYDLKQ 284 (349)
T ss_dssp -------CCCEEEEEEEEEETTTCCE---EEEEEEECSSCEEEEEECSSC------TTEEEEE--ESEEEEEETTT
T ss_pred CCCcCCccccccceeEEEEeccCCcE---EecccccCCCcceeeEecCCC------CCEEEEE--cCeEEEEECcc
Confidence 11110000 00111122355555532 1122233556788999999 8 7788777 88999999874
No 170
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.73 E-value=1.7e-15 Score=129.63 Aligned_cols=259 Identities=8% Similarity=-0.081 Sum_probs=161.4
Q ss_pred EEeCCCceeeeeeeecccceEE-------EEecCCEEEEEeC-Cc--eEEEEecccccccccccccccCCCceeeeecCC
Q 038537 13 VWRQPDCVERGFIKARHGEVRA-------ILAHDNMLFTTNK-DC--KIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82 (358)
Q Consensus 13 vw~~~~~~~~~~~~~h~~~v~~-------i~~~~~~l~s~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
.++..++..+..+..|...... +++++++|+.++. +| .|.+||+.+++....
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------------ 75 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------------ 75 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------------
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------------
Confidence 4577778888888777765544 5668888888887 67 488888877654321
Q ss_pred CccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEE--EEcCCCCEEEEEe--------
Q 038537 83 NTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAI--VVNQDDGFVFTCS-------- 152 (358)
Q Consensus 83 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~-------- 152 (358)
..++...+..+.|+|+++.|+.++.++.|++||+.+++. ......+...+... .++|++..++...
T Consensus 76 --t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~--~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~ 151 (388)
T 3pe7_A 76 --TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE--NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVP 151 (388)
T ss_dssp --CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE--EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred --eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc--eeeeechhhcccccceeECCCCCeeccccccCccccc
Confidence 123444455678999999999999999999999998873 33333344444333 3488999887432
Q ss_pred --------------CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC------CcEEEEEccC
Q 038537 153 --------------SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD------GSINFWEKDK 212 (358)
Q Consensus 153 --------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~ 212 (358)
.+..|.+||+.+++. ..+..+...+..+.|+| .++..|+....+ ..|.++|...
T Consensus 152 ~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~l~~~~~~~~~~~~sp-~dg~~l~~~~~~~~~~~~~~l~~~d~~~ 225 (388)
T 3pe7_A 152 LTDWKKFHEFYFTKPCCRLMRVDLKTGES-----TVILQENQWLGHPIYRP-YDDSTVAFCHEGPHDLVDARMWLINEDG 225 (388)
T ss_dssp CCSHHHHHHHGGGCCCEEEEEEETTTCCE-----EEEEEESSCEEEEEEET-TEEEEEEEEECSCTTTSSCSEEEEETTS
T ss_pred ccccchhhhhhccCCcceEEEEECCCCce-----EEeecCCccccccEECC-CCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence 346789999876532 12223456678888885 156777766653 3678888765
Q ss_pred CcCCccccceeecccceeEEEeeeCCEEEEeeC-CC----eEEEEEcCCCceeeeeeeeecCcccc---eEEEEeecccc
Q 038537 213 MSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSE-DT----TIRVWRRAEGGCYHECLAVLDGHRGP---VRCLAASLEME 284 (358)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~~h~~~---v~~i~~~~~~~ 284 (358)
... ..+.....+.......++|+++.|+..+. ++ .|++||+.+++. +.+..+.++... ...+.|+|+
T Consensus 226 ~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~~~~~~~~~~~~~spd-- 300 (388)
T 3pe7_A 226 TNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--RQLTSMPACSHLMSNYDGSLMVGD-- 300 (388)
T ss_dssp CCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--EEEEEECCEEEEEECTTSSEEEEE--
T ss_pred Cce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--EEEEcCCCceeeeecCCCCeEccC--
Confidence 221 11111000011223468889987755432 22 399999998853 334444432111 122379999
Q ss_pred eeeeCeEEEEc---------cCCCcEEEEEeee
Q 038537 285 KVVMGFLVYSS---------SLDQTFKVWRVKV 308 (358)
Q Consensus 285 ~~~~~~~l~s~---------~~dg~v~iw~~~~ 308 (358)
|+.|+.. ..+..|.+||+..
T Consensus 301 ----g~~l~~~~~~~~~~~~~~~~~i~~~d~~~ 329 (388)
T 3pe7_A 301 ----GSDAPVDVQDDSGYKIENDPFLYVFNMKN 329 (388)
T ss_dssp ----ECCC------------CCCCEEEEEETTT
T ss_pred ----CCcceeEeeeccccccCCCCEEEEEeccC
Confidence 6666643 5567899999874
No 171
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=6.1e-16 Score=132.64 Aligned_cols=273 Identities=7% Similarity=-0.033 Sum_probs=163.1
Q ss_pred CcEEEEeCCCceeeeeeeecccce--EEEEecCCEEEEEeCCceEEEEeccccccccccccccc-CCCceeeeecCCCcc
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEV--RAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTL-PRRSSFLSFSKSNTQ 85 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v--~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 85 (358)
..|.+||+.+++.......+.... ..+++++++|+.++.++.|.+||+.+++.......... ......+.+......
T Consensus 60 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 139 (396)
T 3c5m_A 60 RNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKL 139 (396)
T ss_dssp CEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEE
T ss_pred ceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCcc
Confidence 368888998887655544333322 34577899999999999999999987654322111000 000000000000000
Q ss_pred ccCCCceEEEEEeCCCCEEEEE-----ecCCeEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCC-----
Q 038537 86 QQHRDCVSCMAFYHAEGLLYTG-----SFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSD----- 154 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d----- 154 (358)
.. .....+.|+|+++.++.+ ..+..|.+||+.+++. ..+..+...+..+.|+| ++..|+.++.+
T Consensus 140 ~~--~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~---~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~ 214 (396)
T 3c5m_A 140 VG--IEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL---EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLV 214 (396)
T ss_dssp EE--EEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE---EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSC
T ss_pred cc--ccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE---EeeccCCcccccceECCCCCCEEEEEecCCCCCC
Confidence 00 000114578888876654 4567899999988762 22335667899999999 78877766653
Q ss_pred -CcEEEEEceecCCcceeeeeeccc-CCceeEEEEeecCCCcEEEEeecC-----CcEEEEEccCCcCCccccceeeccc
Q 038537 155 -GSVKIWRRVYRENSHTLTMTLKFQ-QSSVNALALSSFFDNYFLYSGSSD-----GSINFWEKDKMSGGFNHGGFLQGHC 227 (358)
Q Consensus 155 -g~i~~wd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~ 227 (358)
..|.+||+..+.. ..+ .... ...+..++|+| +++.|+.++.+ +.|++||+.++.. .......+.
T Consensus 215 ~~~l~~~d~~~~~~-~~l---~~~~~~~~~~~~~~sp--dg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~~- 285 (396)
T 3c5m_A 215 DARMWLVNEDGSNV-RKI---KEHAEGESCTHEFWIP--DGSAMAYVSYFKGQTDRVIYKANPETLEN--EEVMVMPPC- 285 (396)
T ss_dssp SCCCEEEETTSCCC-EES---SCCCTTEEEEEEEECT--TSSCEEEEEEETTTCCEEEEEECTTTCCE--EEEEECCSE-
T ss_pred CceEEEEECCCCce-eEe---eccCCCccccceEECC--CCCEEEEEecCCCCccceEEEEECCCCCe--EEeeeCCCC-
Confidence 3578888743321 111 1111 23577889998 88877776554 4499999876432 111111121
Q ss_pred ceeEEEee-eCCEEEEee----------------CCCeEEEEEcCCCceeeeeeeeecCccc-----------ceEEEEe
Q 038537 228 FAVLCLVA-IEKLIFSGS----------------EDTTIRVWRRAEGGCYHECLAVLDGHRG-----------PVRCLAA 279 (358)
Q Consensus 228 ~~~~~~~~-~~~~l~~~~----------------~dg~i~iwd~~~~~~~~~~~~~~~~h~~-----------~v~~i~~ 279 (358)
. ..+++ +++++++++ .++.|++||+.+++. ..+..+.. .+..++|
T Consensus 286 -~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~ 358 (396)
T 3c5m_A 286 -S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-----QKLCKHSTSWDVLDGDRQITHPHPSF 358 (396)
T ss_dssp -E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-----CEEEECCCCCCCBTTBSSTTCCCCEE
T ss_pred -C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-----EEccCCCCccccccccccCCCCCceE
Confidence 2 67788 999888754 347899999988742 22333333 2567789
Q ss_pred ecccceeeeCeEEEEcc-CCCcEEEEEeee
Q 038537 280 SLEMEKVVMGFLVYSSS-LDQTFKVWRVKV 308 (358)
Q Consensus 280 ~~~~~~~~~~~~l~s~~-~dg~v~iw~~~~ 308 (358)
+|+ ++.|+.++ .++...+|.+..
T Consensus 359 s~d------g~~l~~~s~~~~~~~l~~~~~ 382 (396)
T 3c5m_A 359 TPN------DDGVLFTSDFEGVPAIYIADV 382 (396)
T ss_dssp CTT------SSEEEEEECTTSSCEEEEEEC
T ss_pred ccC------CCeEEEEecCCCCceEEEEEE
Confidence 999 66665544 567778887764
No 172
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.71 E-value=4.7e-15 Score=123.67 Aligned_cols=257 Identities=8% Similarity=0.027 Sum_probs=167.7
Q ss_pred eCCCcEEEEeCCCceeeeeeee------cccceEEEEecCCEEE-EEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 6 SSSTRIRVWRQPDCVERGFIKA------RHGEVRAILAHDNMLF-TTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 6 ~~dg~v~vw~~~~~~~~~~~~~------h~~~v~~i~~~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+.+++|.++|..+++....+.. .......+.++++.++ +...++.|.+||..+++.+....
T Consensus 14 ~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~------------ 81 (328)
T 3dsm_A 14 YSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT------------ 81 (328)
T ss_dssp SCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE------------
T ss_pred CCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC------------
Confidence 3489999999999887654421 1233566777666554 44557899999999887654321
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccc-----cCeEEEEEcCCCCEEEEEe-
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHE-----SNVNAIVVNQDDGFVFTCS- 152 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~- 152 (358)
.......++++++++..++...++.|.+||..+++ ....+.... .....+++ . +..++++.
T Consensus 82 ---------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~--~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~ 148 (328)
T 3dsm_A 82 ---------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYE--ITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCW 148 (328)
T ss_dssp ---------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTE--EEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEEC
T ss_pred ---------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCe--EEEEEEcCCccccCCCcceEEE-E-CCEEEEEcC
Confidence 22457889998888544444478999999999887 333332211 14456677 3 44454444
Q ss_pred -CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC----------CcEEEEEccCCcCCccccc
Q 038537 153 -SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD----------GSINFWEKDKMSGGFNHGG 221 (358)
Q Consensus 153 -~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~ 221 (358)
.++.|.++|+.+++....+ .. ......++++| ++++++++..+ +.|.++|..+.+ ...
T Consensus 149 ~~~~~v~viD~~t~~~~~~i----~~-g~~p~~i~~~~--dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~----v~~ 217 (328)
T 3dsm_A 149 SYQNRILKIDTETDKVVDEL----TI-GIQPTSLVMDK--YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT----VEK 217 (328)
T ss_dssp TTCCEEEEEETTTTEEEEEE----EC-SSCBCCCEECT--TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE----EEE
T ss_pred CCCCEEEEEECCCCeEEEEE----Ec-CCCccceEEcC--CCCEEEEECCCccCCccccCCceEEEEECCCCe----EEE
Confidence 4889999999765433322 21 23456788887 88877777655 789999988633 211
Q ss_pred eee---cccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEc---
Q 038537 222 FLQ---GHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSS--- 295 (358)
Q Consensus 222 ~~~---~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~--- 295 (358)
.+. +....-++++++++.|+++.. .|.+||..+++... ...+..+.....+++++|+. +.++++.
T Consensus 218 ~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~--~~~~~~~~~~p~gi~vdp~~-----g~lyva~~~~ 288 (328)
T 3dsm_A 218 QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV--RPFLEFRDTKYYGLTVNPNN-----GEVYVADAID 288 (328)
T ss_dssp EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS--SCSBCCCSSCEEEEEECTTT-----CCEEEEECTT
T ss_pred EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee--eeeecCCCCceEEEEEcCCC-----CeEEEEcccc
Confidence 121 223344677888888887755 89999998874311 11122224568899999952 5677776
Q ss_pred -cCCCcEEEEEee
Q 038537 296 -SLDQTFKVWRVK 307 (358)
Q Consensus 296 -~~dg~v~iw~~~ 307 (358)
..++.|.+||..
T Consensus 289 y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 289 YQQQGIVYRYSPQ 301 (328)
T ss_dssp SSSEEEEEEECTT
T ss_pred cccCCEEEEECCC
Confidence 678999999976
No 173
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.71 E-value=1.4e-14 Score=121.19 Aligned_cols=262 Identities=13% Similarity=0.047 Sum_probs=162.4
Q ss_pred eeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCC
Q 038537 5 GSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82 (358)
Q Consensus 5 g~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
.+.++.++.| .++....+..+...+.++.+ ++++++++..++.|.+||..+++.....
T Consensus 23 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~----------------- 82 (333)
T 2dg1_A 23 IISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF----------------- 82 (333)
T ss_dssp CCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-----------------
T ss_pred EeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-----------------
Confidence 3567778888 34555666666666777776 4666777888999999998866532210
Q ss_pred CccccCCCceEEEEEeCCCCEEEEEecC----CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-----
Q 038537 83 NTQQQHRDCVSCMAFYHAEGLLYTGSFD----KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS----- 153 (358)
Q Consensus 83 ~~~~~h~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----- 153 (358)
..+...+.+++++|+++++++...+ +.|.+||..++..........+...+.+++++|+++++++...
T Consensus 83 ---~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~ 159 (333)
T 2dg1_A 83 ---VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTN 159 (333)
T ss_dssp ---ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTB
T ss_pred ---eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccC
Confidence 1244669999999999887777666 6899999887763211111123467899999999988776653
Q ss_pred -CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEE-EeecCCcEEEEEccCCcCCccc-----cceeecc
Q 038537 154 -DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLY-SGSSDGSINFWEKDKMSGGFNH-----GGFLQGH 226 (358)
Q Consensus 154 -dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~ 226 (358)
.+.|..+|...++ ...+ ......+..++++| +++.++ +.+.++.|.+||+......... .....++
T Consensus 160 ~~~~l~~~~~~~~~-~~~~----~~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~ 232 (333)
T 2dg1_A 160 PLGGVYYVSPDFRT-VTPI----IQNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH 232 (333)
T ss_dssp CCEEEEEECTTSCC-EEEE----EEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS
T ss_pred CCceEEEEeCCCCE-EEEe----ecCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC
Confidence 2445555543221 1111 11234577889988 887554 4556789999998642111110 0001111
Q ss_pred -cceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcc------cceEEEEeecccceeeeCeEEEEccCCC
Q 038537 227 -CFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHR------GPVRCLAASLEMEKVVMGFLVYSSSLDQ 299 (358)
Q Consensus 227 -~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~------~~v~~i~~~~~~~~~~~~~~l~s~~~dg 299 (358)
...-++++++++++++...++.|.+||.. ++ .+..+..+. ..+.+++|+|+ +..|+.++.++
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~----~~~~~~~~~~~~g~~~~~~~~~~~~d------g~~L~v~~~~g 301 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GY----PIGQILIPGRDEGHMLRSTHPQFIPG------TNQLIICSNDI 301 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SC----EEEEEECTTGGGTCSCBCCEEEECTT------SCEEEEEEECG
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECCC-CC----EEEEEEcCCCccccccCcceEEECCC------CCEEEEEeCcc
Confidence 11225566778887777778999999984 42 233333332 26899999988 55555444443
Q ss_pred ----cEEEEEee
Q 038537 300 ----TFKVWRVK 307 (358)
Q Consensus 300 ----~v~iw~~~ 307 (358)
.-.+|.++
T Consensus 302 ~~~~~~~l~~~~ 313 (333)
T 2dg1_A 302 EMGGGSMLYTVN 313 (333)
T ss_dssp GGTCCEEEEEEE
T ss_pred CCCCCceEEEEe
Confidence 34555554
No 174
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.69 E-value=1.5e-14 Score=117.14 Aligned_cols=216 Identities=10% Similarity=-0.000 Sum_probs=149.2
Q ss_pred cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCC-CceEEEEEeCCCCEEEEEecCCeEEEE
Q 038537 38 HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHR-DCVSCMAFYHAEGLLYTGSFDKTVKAW 116 (358)
Q Consensus 38 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~dg~i~iw 116 (358)
.+++|++++.|+.|.+||..+++.+..... +. ..+.++.++|+|++++ +.++.|..|
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~--------------------~~~~~~~~~~~~pdG~ilv--s~~~~V~~~ 61 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPL--------------------EKGWECNSVAATKAGEILF--SYSKGAKMI 61 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEEC--------------------CTTCCCCEEEECTTSCEEE--ECBSEEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCC--------------------CccCCCcCeEECCCCCEEE--eCCCCEEEE
Confidence 357899999999999999988887765432 22 3578899999999888 457789999
Q ss_pred EccCCccccccccccc-ccCeEEEEEcCCCCEEEEEeC-CCcEEEEEceecCCcceeeeee--cccCCceeEEEEeecCC
Q 038537 117 RVLDKRCTCVDSFVAH-ESNVNAIVVNQDDGFVFTCSS-DGSVKIWRRVYRENSHTLTMTL--KFQQSSVNALALSSFFD 192 (358)
Q Consensus 117 d~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~ 192 (358)
|. +++ .+..+..+ ...+.++.+.++++.+++.+. ++.|..+|. +++......... ..+......++..+ +
T Consensus 62 d~-~G~--~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~--~ 135 (276)
T 3no2_A 62 TR-DGR--ELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNK--K 135 (276)
T ss_dssp CT-TSC--EEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECT--T
T ss_pred CC-CCC--EEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECC--C
Confidence 98 666 45555543 346888999999999999887 777777764 333322222111 11222445556666 8
Q ss_pred CcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCc--
Q 038537 193 NYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGH-- 270 (358)
Q Consensus 193 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h-- 270 (358)
++++++...++.|..||.. ++....... .... ......+++++++++..++.|..+|..+++. +..+..+
T Consensus 136 G~~lv~~~~~~~v~~~d~~-G~~~w~~~~--~~~~-~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~----~w~~~~~~~ 207 (276)
T 3no2_A 136 GNYLVPLFATSEVREIAPN-GQLLNSVKL--SGTP-FSSAFLDNGDCLVACGDAHCFVQLNLESNRI----VRRVNANDI 207 (276)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEEEC--SSCC-CEEEECTTSCEEEECBTTSEEEEECTTTCCE----EEEEEGGGS
T ss_pred CCEEEEecCCCEEEEECCC-CCEEEEEEC--CCCc-cceeEcCCCCEEEEeCCCCeEEEEeCcCCcE----EEEecCCCC
Confidence 9999999999999999987 443333221 1111 2234457889999999889999999998854 3333322
Q ss_pred ----ccceEEEEeecccceeeeCeEEEEc
Q 038537 271 ----RGPVRCLAASLEMEKVVMGFLVYSS 295 (358)
Q Consensus 271 ----~~~v~~i~~~~~~~~~~~~~~l~s~ 295 (358)
...+..++..++ |.++++.
T Consensus 208 ~~~~l~~~~~~~~~~~------G~i~v~~ 230 (276)
T 3no2_A 208 EGVQLFFVAQLFPLQN------GGLYICN 230 (276)
T ss_dssp BSCCCSEEEEEEECTT------SCEEEEE
T ss_pred CCccccccccceEcCC------CCEEEEe
Confidence 233778888888 7777776
No 175
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=2.9e-14 Score=116.60 Aligned_cols=219 Identities=11% Similarity=0.113 Sum_probs=145.1
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeee------cccceEEEEe--cCCEEEEEe-C-CceEEEEecccccccccccccccC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKA------RHGEVRAILA--HDNMLFTTN-K-DCKIRIWNFTVSDNFRTKKVTTLP 71 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~------h~~~v~~i~~--~~~~l~s~~-~-dg~i~iw~~~~~~~~~~~~~~~~~ 71 (358)
+++...++.|.+||.. ++.+..+.. +...+.++++ .++.++.+. . ++.|.+||. +++......
T Consensus 44 ~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~~~~~~~----- 116 (286)
T 1q7f_A 44 IVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQFVRKFG----- 116 (286)
T ss_dssp EEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCEEEEEC-----
T ss_pred EEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCcEEEEec-----
Confidence 4556778899999977 555555432 3345677776 234444444 3 889999994 343322111
Q ss_pred CCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccc--ccccCeEEEEEcCCCCEEE
Q 038537 72 RRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFV--AHESNVNAIVVNQDDGFVF 149 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~ 149 (358)
..+...+.+++++|+++++++...++.|.+||..... +..+. .+...+..+++++++++++
T Consensus 117 --------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~---~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 117 --------------ATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV---LHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp --------------TTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE---EEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred --------------CccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCE---EEEeCCCCccCCcEEEEECCCCCEEE
Confidence 1234567899999999988877788999999965332 33332 3445689999999999888
Q ss_pred EEeCCCcEEEEEceecCCcceeeeeec--ccCCceeEEEEeecCCCcEEEEeecCC-cEEEEEccCCcCCccccceeecc
Q 038537 150 TCSSDGSVKIWRRVYRENSHTLTMTLK--FQQSSVNALALSSFFDNYFLYSGSSDG-SINFWEKDKMSGGFNHGGFLQGH 226 (358)
Q Consensus 150 ~~~~dg~i~~wd~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~ 226 (358)
+...++.|++||... . ....+. .+...+..+++++ +++++++...++ .|.+||... .....+..+
T Consensus 180 ~~~~~~~i~~~~~~g-~----~~~~~~~~g~~~~p~~i~~d~--~G~l~v~~~~~~~~i~~~~~~g-----~~~~~~~~~ 247 (286)
T 1q7f_A 180 SDNRAHCVKVFNYEG-Q----YLRQIGGEGITNYPIGVGINS--NGEILIADNHNNFNLTIFTQDG-----QLISALESK 247 (286)
T ss_dssp EEGGGTEEEEEETTC-C----EEEEESCTTTSCSEEEEEECT--TCCEEEEECSSSCEEEEECTTS-----CEEEEEEES
T ss_pred EECCCCEEEEEcCCC-C----EEEEEccCCccCCCcEEEECC--CCCEEEEeCCCCEEEEEECCCC-----CEEEEEccc
Confidence 877899999999632 1 112222 2235678999998 888888887776 999999643 111112221
Q ss_pred c----ceeEEEeeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 227 C----FAVLCLVAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 227 ~----~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
. ..-.+++++++++++ +.|+.|++|+....
T Consensus 248 ~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 248 VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 1 123566778877776 57999999998654
No 176
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.69 E-value=1.2e-13 Score=122.60 Aligned_cols=274 Identities=10% Similarity=0.056 Sum_probs=178.3
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccc-eEEEEecCCEEEEEeCCceEEEEecc--cccccccccccccCCCceeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGE-VRAILAHDNMLFTTNKDCKIRIWNFT--VSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~-v~~i~~~~~~l~s~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+++...++.|.++|..+++.+..+.....+ -..++++++++++++.|+.|.+||+. +.+.+....
T Consensus 170 ~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~------------ 237 (567)
T 1qks_A 170 SVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK------------ 237 (567)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE------------
T ss_pred EEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe------------
Confidence 566778899999999999988887654321 23445678999999999999999995 544432211
Q ss_pred ecCCCccccCCCceEEEEEe----CCCCEEEEEec-CCeEEEEEccCCcccccccccc----------c-ccCeEEEEEc
Q 038537 79 FSKSNTQQQHRDCVSCMAFY----HAEGLLYTGSF-DKTVKAWRVLDKRCTCVDSFVA----------H-ESNVNAIVVN 142 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~----------~-~~~v~~~~~~ 142 (358)
. ......++|+ |+|+++++++. ++.|.++|..+.+ .+..+.. | ...+..+..+
T Consensus 238 --------~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~--~~~~i~~~~~~~~~~~~~p~~rva~i~~s 306 (567)
T 1qks_A 238 --------I-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILAS 306 (567)
T ss_dssp --------C-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred --------c-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc--EEEEEeccccccccccccCCCceEEEEEc
Confidence 1 1235789999 69998877655 5899999988876 4433321 2 2267888888
Q ss_pred CCCCE-EEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEee-cCCcEEEEEccCCcCCcccc
Q 038537 143 QDDGF-VFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS-SDGSINFWEKDKMSGGFNHG 220 (358)
Q Consensus 143 ~~~~~-l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~ 220 (358)
+++.. ++....+|.|.++|........ ...-........+.|+| ++++++++. .++.|.++|+.+.+......
T Consensus 307 ~~~~~~vv~~~~~g~v~~vd~~~~~~~~---v~~i~~~~~~~d~~~~p--dgr~~~va~~~sn~V~ViD~~t~kl~~~i~ 381 (567)
T 1qks_A 307 HYRPEFIVNVKETGKILLVDYTDLNNLK---TTEISAERFLHDGGLDG--SHRYFITAANARNKLVVIDTKEGKLVAIED 381 (567)
T ss_dssp SSSSEEEEEETTTTEEEEEETTCSSEEE---EEEEECCSSEEEEEECT--TSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred CCCCEEEEEecCCCeEEEEecCCCccce---eeeeeccccccCceECC--CCCEEEEEeCCCCeEEEEECCCCcEEEEEe
Confidence 87664 4455567999999985433111 11111234566788888 888876655 57899999999854222111
Q ss_pred c-eeecccce-eEEEeee-CCEEEEee-CCCeEEEEEcCCCce---eeeeeeeecCcccceEEEEeecccceeeeCeEEE
Q 038537 221 G-FLQGHCFA-VLCLVAI-EKLIFSGS-EDTTIRVWRRAEGGC---YHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVY 293 (358)
Q Consensus 221 ~-~~~~~~~~-~~~~~~~-~~~l~~~~-~dg~i~iwd~~~~~~---~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~ 293 (358)
. ....|... ..-++|+ +.+.+++. .++.|.++|..+.+. .++.+..+......-..|..+|+ +++|.
T Consensus 382 vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~------~~~l~ 455 (567)
T 1qks_A 382 TGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPN------SQYLY 455 (567)
T ss_dssp CSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT------CSEEE
T ss_pred ccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCC------CCeEE
Confidence 1 11234322 2234666 44445543 568999999987321 12456666554333355788999 66776
Q ss_pred EccC-------CCcEEEEEeeeC
Q 038537 294 SSSL-------DQTFKVWRVKVM 309 (358)
Q Consensus 294 s~~~-------dg~v~iw~~~~~ 309 (358)
+... .++|.++|+.+.
T Consensus 456 v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 456 VDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EECTTCSSHHHHTCEEEEEGGGC
T ss_pred EecCCCCCcccCceEEEEECCcc
Confidence 6442 459999999976
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.68 E-value=1.1e-14 Score=133.48 Aligned_cols=258 Identities=10% Similarity=0.001 Sum_probs=155.0
Q ss_pred CCcEEEEeCC--C-ceeeeeeee-----cccceEEEE--ecCCEEEEEeCC----------ceEEEEeccc------ccc
Q 038537 8 STRIRVWRQP--D-CVERGFIKA-----RHGEVRAIL--AHDNMLFTTNKD----------CKIRIWNFTV------SDN 61 (358)
Q Consensus 8 dg~v~vw~~~--~-~~~~~~~~~-----h~~~v~~i~--~~~~~l~s~~~d----------g~i~iw~~~~------~~~ 61 (358)
+..|.+|++. + ++ ...+.. |...+.+++ ++++.|+.++.+ ..|++||+.+ +..
T Consensus 101 ~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 179 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV 179 (662)
T ss_dssp TCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS
T ss_pred CCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce
Confidence 5667777765 3 33 344444 555666554 478899988876 5899999987 332
Q ss_pred cccccccccCCCceeeeecCCCccc-cCCCceEEEEEeCCCCEEEEEecC--------CeEEEEEcc-CCccc-cccccc
Q 038537 62 FRTKKVTTLPRRSSFLSFSKSNTQQ-QHRDCVSCMAFYHAEGLLYTGSFD--------KTVKAWRVL-DKRCT-CVDSFV 130 (358)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~-~~~~~-~~~~~~ 130 (358)
. .+. .+...+..++|+|||+.|+.++.+ ..|++||+. ++... ......
T Consensus 180 ~---------------------~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 180 R---------------------ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp E---------------------ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred e---------------------EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 1 112 344567889999999999988755 479999998 56211 222333
Q ss_pred ccccCeEEEEEcCCCCEEEEEeCCCc--EEEEEceecCCcceeeeeecccCCc--------eeEEEEeecCCCcEEEEee
Q 038537 131 AHESNVNAIVVNQDDGFVFTCSSDGS--VKIWRRVYRENSHTLTMTLKFQQSS--------VNALALSSFFDNYFLYSGS 200 (358)
Q Consensus 131 ~~~~~v~~~~~~~~~~~l~~~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~~--------i~~~~~~~~~~~~~l~~~~ 200 (358)
.+...+..+.|+||+++++++..++. |.+||+.+++ .......+... +..+++++ ++.+++++.
T Consensus 239 ~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~----~~~l~~~~~~~~~p~w~~~~~~~~~~~--~~~~~~~~~ 312 (662)
T 3azo_A 239 GPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA----ATQLCRREEEFAGPLWTPGMRWFAPLA--NGLIAVVHG 312 (662)
T ss_dssp ETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC----EEESSCCSSBSSCCCCSTTCCSEEECT--TSCEEEEEB
T ss_pred CCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc----eeecccccccccCccccccCceEeEeC--CCEEEEEEE
Confidence 45688999999999998888888884 5555543322 11111111111 45778877 888999998
Q ss_pred cCCcEEEEEccCCcCCccccceeecccceeEEE-eeeCCEEE--EeeCCC--eEEEEEcCCCceeeeeeeeecCcccceE
Q 038537 201 SDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCL-VAIEKLIF--SGSEDT--TIRVWRRAEGGCYHECLAVLDGHRGPVR 275 (358)
Q Consensus 201 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~--~~~~dg--~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 275 (358)
. +.++||.+...... ...+..+...+..+ +++++.++ +++.+. .|.++|+.+++. ......+...+.
T Consensus 313 ~-~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~----~~l~~~~~~~~~ 384 (662)
T 3azo_A 313 K-GAAVLGILDPESGE---LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA----RTIGARHTDPVD 384 (662)
T ss_dssp S-SSCEEEEEETTTTE---EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE----EEEESCCCCSSC
T ss_pred c-CccEEEEEECCCCc---EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce----EEeecCCcccCC
Confidence 8 99999954421111 12244455556666 77765443 334443 466667767632 222233433333
Q ss_pred EEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 276 CLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 276 ~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
...+.+. ..+.+.+..+..|..|-..
T Consensus 385 ~~~~~~~------~~~~~~~~dg~~i~~~~~~ 410 (662)
T 3azo_A 385 PAYYPEP------QIRTFTAPDGREIHAHIYP 410 (662)
T ss_dssp GGGSCCC------EEEEEECTTSCEEEEEEEC
T ss_pred ccccCcc------eEEEEEcCCCCEEEEEEEC
Confidence 3334433 3445555445567777654
No 178
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=3.3e-14 Score=119.63 Aligned_cols=236 Identities=10% Similarity=0.090 Sum_probs=149.3
Q ss_pred CCcEEEEeCCCceeeeeeeecccceEEE--EecCCEEEEEeCC---c--eEEEEecccccccccccccccCCCceeeeec
Q 038537 8 STRIRVWRQPDCVERGFIKARHGEVRAI--LAHDNMLFTTNKD---C--KIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~~h~~~v~~i--~~~~~~l~s~~~d---g--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
++.|.+||+.+++.... ..+..+ ++++++|+.++.+ + .|.+|++.+++....
T Consensus 42 ~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l---------------- 100 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI---------------- 100 (347)
T ss_dssp EEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE----------------
T ss_pred cceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE----------------
Confidence 67899999988765433 334444 5578888877653 3 377778776543211
Q ss_pred CCCccccCCCceEEEEEeCCCCEEEEEecC---------------------------CeEEEEEccCCcccccccccccc
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGLLYTGSFD---------------------------KTVKAWRVLDKRCTCVDSFVAHE 133 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~ 133 (358)
..+.. +..++|+|+++.|+.++.+ ..|.+||+.+++. +..+.. .
T Consensus 101 -----~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~--~~~l~~-~ 171 (347)
T 2gop_A 101 -----LEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV--IEEFEK-P 171 (347)
T ss_dssp -----EEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE--EEEEEE-E
T ss_pred -----EcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE--EeeecC-C
Confidence 12223 8999999999988887642 5799999988762 133333 3
Q ss_pred cCeEEEEEcCCCCEEEEEeCCC-------cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC----
Q 038537 134 SNVNAIVVNQDDGFVFTCSSDG-------SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD---- 202 (358)
Q Consensus 134 ~~v~~~~~~~~~~~l~~~~~dg-------~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d---- 202 (358)
.+..+.|+|++ +++++..++ ...+|.+. ......+ ..+ ..+..+ +| +++.|+.++.+
T Consensus 172 -~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l----~~~-~~~~~~--sp--dg~~l~~~~~~~~~~ 239 (347)
T 2gop_A 172 -RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKM----FEK-VSFYAV--DS--DGERILLYGKPEKKY 239 (347)
T ss_dssp -TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEE----EEE-ESEEEE--EE--CSSCEEEEECCSSSC
T ss_pred -CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEe----ccC-cceeeE--CC--CCCEEEEEEccccCC
Confidence 78899999999 777776542 45666654 2221111 112 333333 66 89888877654
Q ss_pred ----CcEEEEEccCCcCCccccceeeccccee---EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceE
Q 038537 203 ----GSINFWEKDKMSGGFNHGGFLQGHCFAV---LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVR 275 (358)
Q Consensus 203 ----g~i~i~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~ 275 (358)
..|.+|| ++. .......+...+ ..++ ++ ++++++.++.+++| +.++ +.. .+..+...|.
T Consensus 240 ~~~~~~l~~~d--~~~----~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g----~~~-~~~~~~~~v~ 305 (347)
T 2gop_A 240 MSEHNKLYIYD--GKE----VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG----EIK-PIAKGRHWIM 305 (347)
T ss_dssp CCSSCEEEEEC--SSC----EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS----SEE-EEECSSSEEE
T ss_pred ccccceEEEEC--CCc----eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC----ceE-EEecCCCeEE
Confidence 3678887 211 111122233333 4455 66 88899999999999 8754 222 2334577899
Q ss_pred EEEeecccceeeeCeEEEEccCCCcE-EEEEee
Q 038537 276 CLAASLEMEKVVMGFLVYSSSLDQTF-KVWRVK 307 (358)
Q Consensus 276 ~i~~~~~~~~~~~~~~l~s~~~dg~v-~iw~~~ 307 (358)
+++|+| . ++++++.++.. .+|.+.
T Consensus 306 ~~~~s~--~------~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 306 GFDVDE--I------VVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEESS--S------EEEEEECSSSCCEEEEES
T ss_pred eeeeeC--c------EEEEEcCCCChHHheEeC
Confidence 999998 2 56666666665 888875
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=3.8e-14 Score=119.28 Aligned_cols=216 Identities=6% Similarity=-0.000 Sum_probs=143.1
Q ss_pred EEEEecCCEEEEEe---------CCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCE
Q 038537 33 RAILAHDNMLFTTN---------KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGL 103 (358)
Q Consensus 33 ~~i~~~~~~l~s~~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 103 (358)
....++|+.++... .++.|.+||+.+++... + ..+..++|+|+|+.
T Consensus 18 ~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---------------------l----~~~~~~~~SpDg~~ 72 (347)
T 2gop_A 18 SDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRF---------------------I----ENATMPRISPDGKK 72 (347)
T ss_dssp EEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE---------------------E----ESCEEEEECTTSSE
T ss_pred ccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEE---------------------c----ccCCCeEECCCCCE
Confidence 33333777776542 26679999988764321 1 34788999999999
Q ss_pred EEEEecC---C--eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC------------------------
Q 038537 104 LYTGSFD---K--TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD------------------------ 154 (358)
Q Consensus 104 l~~~~~d---g--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------------------ 154 (358)
|+.++.+ + .|.+|++.+++ ... +..+.. +..+.|+|+++.|+.++.+
T Consensus 73 la~~~~~~~~~~~~l~~~~~~~g~--~~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (347)
T 2gop_A 73 IAFMRANEEKKVSEIWVADLETLS--SKK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFD 148 (347)
T ss_dssp EEEEEEETTTTEEEEEEEETTTTE--EEE-EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC--------
T ss_pred EEEEEeccCCCcceEEEEECCCCc--eEE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccccc
Confidence 9887654 3 47788887776 222 222334 9999999999988887642
Q ss_pred ---CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC-------cEEEEEccCCcCCccccceee
Q 038537 155 ---GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG-------SINFWEKDKMSGGFNHGGFLQ 224 (358)
Q Consensus 155 ---g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg-------~i~i~d~~~~~~~~~~~~~~~ 224 (358)
..|.+||+.+++.... +.. . .+..+.|+| ++ +++++..++ ...+|.+.+.. .. .+.
T Consensus 149 ~~~~~l~~~d~~~~~~~~~----l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~--~~---~l~ 214 (347)
T 2gop_A 149 GEKTTFWIFDTESEEVIEE----FEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWEDGK--EE---KMF 214 (347)
T ss_dssp -CEEEEEEEETTTTEEEEE----EEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEETTE--EE---EEE
T ss_pred CccceEEEEECCCCeEEee----ecC-C-CcccccCCC--Ce-EEEEEecccccccccccccEEEeCCCc--eE---Eec
Confidence 5688899865432111 122 2 778899998 88 777775542 34555444211 11 122
Q ss_pred cccceeEEEeeeCCEEEEeeCC--------CeEEEEEcCCCceeeeeeeeecCcccceEE-EEeecccceeeeCeEEEEc
Q 038537 225 GHCFAVLCLVAIEKLIFSGSED--------TTIRVWRRAEGGCYHECLAVLDGHRGPVRC-LAASLEMEKVVMGFLVYSS 295 (358)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~-i~~~~~~~~~~~~~~l~s~ 295 (358)
.+ ..+..++|+|+.|+.++.+ ..|++|| ++ +.......|...+.. +.|+ + + +++++
T Consensus 215 ~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~----~~~~l~~~~~~~~~~~~~~s-d------g-~~~~~ 279 (347)
T 2gop_A 215 EK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GK----EVMGILDEVDRGVGQAKIKD-G------K-VYFTL 279 (347)
T ss_dssp EE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SS----CEEESSTTCCSEEEEEEEET-T------E-EEEEE
T ss_pred cC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CC----ceEeccccCCcccCCccEEc-C------c-EEEEE
Confidence 22 4445558999988877644 4688888 44 334444566778886 8999 8 7 88999
Q ss_pred cCCCcEEEEEee
Q 038537 296 SLDQTFKVWRVK 307 (358)
Q Consensus 296 ~~dg~v~iw~~~ 307 (358)
+.++.+++| +.
T Consensus 280 ~~~~~~~l~-~~ 290 (347)
T 2gop_A 280 FEEGSVNLY-IW 290 (347)
T ss_dssp EETTEEEEE-EE
T ss_pred ecCCcEEEE-Ec
Confidence 999999999 87
No 180
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.67 E-value=2.6e-14 Score=115.80 Aligned_cols=236 Identities=5% Similarity=-0.074 Sum_probs=153.5
Q ss_pred ceEEEEe--cCCEEE-EEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEE
Q 038537 31 EVRAILA--HDNMLF-TTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTG 107 (358)
Q Consensus 31 ~v~~i~~--~~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 107 (358)
...++.+ ++++++ +...++.|.+|+..+...... . ..+...+.+++++++++++++.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~-~-------------------~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-P-------------------FNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC-C-------------------CCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE-e-------------------eCCcCCcceeEECCCCCEEEEc
Confidence 4456655 456555 446788999998765432110 0 1223457789999998866655
Q ss_pred ecCCeEEEEEccCCccccccccc-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEE
Q 038537 108 SFDKTVKAWRVLDKRCTCVDSFV-AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALA 186 (358)
Q Consensus 108 ~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~ 186 (358)
. ++.|.+||...... ..+. .....+..++++++++++++...++.|.+|+..+... . .........+..++
T Consensus 85 ~-~~~i~~~d~~~~~~---~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~--~--~~~~~~~~~p~~i~ 156 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQ---TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--T--VLPFTGLNDPDGVA 156 (270)
T ss_dssp T-TTEEEEECTTCSCC---EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC--E--ECCCCSCCSCCCEE
T ss_pred C-CCEEEEEeCCCceE---eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCcee--E--eeccccCCCceeEE
Confidence 5 88999999876542 2222 2235789999999999887777788999997533221 1 11112234678899
Q ss_pred EeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec-ccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeee
Q 038537 187 LSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG-HCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLA 265 (358)
Q Consensus 187 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 265 (358)
+++ +++++++...++.|.+||.......... ... ....-+++++++.++++...++.|.+|+...... ..
T Consensus 157 ~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~---~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~----~~ 227 (270)
T 1rwi_B 157 VDN--SGNVYVTDTDNNRVVKLEAESNNQVVLP---FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS----TV 227 (270)
T ss_dssp ECT--TCCEEEEEGGGTEEEEECTTTCCEEECC---CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC----EE
T ss_pred EeC--CCCEEEEECCCCEEEEEecCCCceEeec---ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc----ee
Confidence 987 7887777777889999998763211111 111 1122345566777777777788999999876531 22
Q ss_pred eecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 266 VLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 266 ~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
....+...+.+++++++ |.++++...++.|+++++...
T Consensus 228 ~~~~~~~~p~~i~~~~~------g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 228 LPFTGLNTPLAVAVDSD------RTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CCCCSCSCEEEEEECTT------CCEEEEEGGGTEEEEECCCGG
T ss_pred eccCCCCCceeEEECCC------CCEEEEECCCCEEEEEcCCCc
Confidence 22233457899999999 788899999999999998754
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.66 E-value=1.8e-13 Score=126.29 Aligned_cols=240 Identities=8% Similarity=0.019 Sum_probs=152.0
Q ss_pred ceEEE--EecCCEEEEEeCCc-----eEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCE
Q 038537 31 EVRAI--LAHDNMLFTTNKDC-----KIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGL 103 (358)
Q Consensus 31 ~v~~i--~~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 103 (358)
.+..+ ++++++|+.+..++ .|++||+.+++...... ....+..++|+|||+.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~---------------------~~~~~~~~~wspDg~~ 184 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL---------------------ERVKFSCMAWTHDGKG 184 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE---------------------EEECSCCEEECTTSSE
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc---------------------cCcccceEEEEeCCCE
Confidence 45544 44788888765433 89999999876543110 1112567999999999
Q ss_pred EEEEecCCe----------------EEEEEccCCcccccc--cccccccCeEEEEEcCCCCEEEEEeC-----CCcEEEE
Q 038537 104 LYTGSFDKT----------------VKAWRVLDKRCTCVD--SFVAHESNVNAIVVNQDDGFVFTCSS-----DGSVKIW 160 (358)
Q Consensus 104 l~~~~~dg~----------------i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~w 160 (358)
|+.++.++. |++|++.+++..... ....+...+..+.|+|++++|+.++. +..|++|
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~ 264 (710)
T 2xdw_A 185 MFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (710)
T ss_dssp EEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEE
Confidence 999888765 999999877632122 22234556889999999999888765 5689999
Q ss_pred Ecee------cCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC----CcEEEEEccCCcCCccccceeecccc--
Q 038537 161 RRVY------RENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD----GSINFWEKDKMSGGFNHGGFLQGHCF-- 228 (358)
Q Consensus 161 d~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~-- 228 (358)
|+.+ +.... ..+..+...+.. .+++ ++..|+..+.. +.|.+||+.+... .....+..+..
T Consensus 265 d~~~~~~~~~~~~~~---~~l~~~~~~~~~-~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 265 DLQQESNGITGILKW---VKLIDNFEGEYD-YVTN--EGTVFTFKTNRHSPNYRLINIDFTDPEE--SKWKVLVPEHEKD 336 (710)
T ss_dssp EGGGSSSSSCSSCCC---EEEECSSSSCEE-EEEE--ETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSSC
T ss_pred ECcccccccCCccce---EEeeCCCCcEEE-EEec--cCCEEEEEECCCCCCCEEEEEeCCCCCc--ccceeccCCCCCC
Confidence 9875 32111 122223334433 4676 77777665543 3699999876421 01112222322
Q ss_pred eeEEEe--eeCCEEEEeeCCCe--EEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEE-Ec---cCCCc
Q 038537 229 AVLCLV--AIEKLIFSGSEDTT--IRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVY-SS---SLDQT 300 (358)
Q Consensus 229 ~~~~~~--~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~-s~---~~dg~ 300 (358)
.+..+. +++.++++...|+. |++|++.++ +.+..+..+.+.+..+.++|+ +..++ +. ...+.
T Consensus 337 ~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g----~~~~~l~~~~~~v~~~~~s~d------~~~l~~~~ss~~~P~~ 406 (710)
T 2xdw_A 337 VLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG----ALLKIFPLEVGSVVGYSGQKK------DTEIFYQFTSFLSPGI 406 (710)
T ss_dssp EEEEEEEETTTEEEEEEEETTEEEEEEEETTTC----CEEEEECCCSSEEEEEECCTT------CSEEEEEEECSSCCCE
T ss_pred eEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC----CEEEecCCCCceEEEEecCCC------CCEEEEEEeCCCCCCE
Confidence 343333 34567778888885 566777666 334556667788999999998 44333 32 34578
Q ss_pred EEEEEeeeC
Q 038537 301 FKVWRVKVM 309 (358)
Q Consensus 301 v~iw~~~~~ 309 (358)
|..||+.+.
T Consensus 407 i~~~d~~tg 415 (710)
T 2xdw_A 407 IYHCDLTKE 415 (710)
T ss_dssp EEEEETTSS
T ss_pred EEEEECCCC
Confidence 999998653
No 182
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.65 E-value=8.2e-14 Score=114.53 Aligned_cols=242 Identities=12% Similarity=0.081 Sum_probs=154.6
Q ss_pred ceeeeeeeecccceEEEEe--cCC-EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEE
Q 038537 19 CVERGFIKARHGEVRAILA--HDN-MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCM 95 (358)
Q Consensus 19 ~~~~~~~~~h~~~v~~i~~--~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 95 (358)
+..+..+..+.....++.+ +++ +++++..++.|..|+..++ ... +..+...+.++
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~--------------------~~~~~~~~~~l 74 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP--------------------EMHPSHHQNGH 74 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE--------------------EESSCSSEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE--------------------EECCCCCccee
Confidence 3344455555555566665 466 7788888999999998865 211 12345668999
Q ss_pred EEeCCCCEEEEEecCCeEEEEEccCCcccccccc-c-ccccCeEEEEEcCCCCEEEEEeC-----------------CCc
Q 038537 96 AFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF-V-AHESNVNAIVVNQDDGFVFTCSS-----------------DGS 156 (358)
Q Consensus 96 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~-----------------dg~ 156 (358)
+++|+++++++...++.|.+||..+++...+... . .....+..++++|+|+++++... .+.
T Consensus 75 ~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~ 154 (296)
T 3e5z_A 75 CLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRW 154 (296)
T ss_dssp EECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred eECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcE
Confidence 9999999887777778999999977763222111 1 11234678999999998887321 234
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCc-cccceeeccc--ceeEEE
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGF-NHGGFLQGHC--FAVLCL 233 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~--~~~~~~ 233 (358)
|..++.. .. + .....+......++++| +++.+++.+.++.|.+|++... ... .....+..+. ..-+++
T Consensus 155 l~~~~~~--g~---~-~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~p~~i~~ 225 (296)
T 3e5z_A 155 VFRLAPD--GT---L-SAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNAR-GETEYQGVHFTVEPGKTDGLRV 225 (296)
T ss_dssp EEEECTT--SC---E-EEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSS-SCEEEEEEEECCSSSCCCSEEE
T ss_pred EEEECCC--CC---E-EEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCC-CcCcCCCeEeeCCCCCCCeEEE
Confidence 5555432 11 1 11223455678899998 8888877777899999998621 111 0011111111 123567
Q ss_pred eeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEe-ecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 234 VAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAA-SLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 234 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~-~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+++|++.++. ++.|.+||.. + +.+..+..+.. +++++| .|+ ++.|++++.+ .+|.++.
T Consensus 226 d~~G~l~v~~--~~~v~~~~~~-g----~~~~~~~~~~~-~~~~~f~~~d------~~~L~v~t~~---~l~~~~~ 284 (296)
T 3e5z_A 226 DAGGLIWASA--GDGVHVLTPD-G----DELGRVLTPQT-TSNLCFGGPE------GRTLYMTVST---EFWSIET 284 (296)
T ss_dssp BTTSCEEEEE--TTEEEEECTT-S----CEEEEEECSSC-CCEEEEESTT------SCEEEEEETT---EEEEEEC
T ss_pred CCCCCEEEEc--CCeEEEECCC-C----CEEEEEECCCC-ceeEEEECCC------CCEEEEEcCC---eEEEEEc
Confidence 7788866665 7889999987 4 34556666666 899999 477 6677777766 3555553
No 183
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.64 E-value=2.7e-13 Score=114.54 Aligned_cols=244 Identities=11% Similarity=0.017 Sum_probs=154.9
Q ss_pred CCCcEEEEeCCCceeeeeeeecc------cce--EEEEecCCEEEEEeC--CceEEEEeccccccccc-ccccccCCCce
Q 038537 7 SSTRIRVWRQPDCVERGFIKARH------GEV--RAILAHDNMLFTTNK--DCKIRIWNFTVSDNFRT-KKVTTLPRRSS 75 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~~h~------~~v--~~i~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~-~~~~~~~~~~~ 75 (358)
.++.|.+||..+.+.+..+.... ... .++++++++|+++.. ++.|.+||+.+.+.+.. ...
T Consensus 79 ~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-------- 150 (361)
T 2oiz_A 79 RSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-------- 150 (361)
T ss_dssp EEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG--------
T ss_pred CCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC--------
Confidence 36789999999988888776431 122 355668899988864 68999999998765432 211
Q ss_pred eeeecCCCccccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccC-Cccccc----ccccccccCeEEEEEcCCCCEEE
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLD-KRCTCV----DSFVAHESNVNAIVVNQDDGFVF 149 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~ 149 (358)
. ....+.+.|++ ..+++.+.||.+.+|+... ++.... ..+.....++ .+.+.+++..++
T Consensus 151 -------------~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~ 215 (361)
T 2oiz_A 151 -------------A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAH 215 (361)
T ss_dssp -------------T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEE
T ss_pred -------------C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEE
Confidence 0 11224566765 5777888899999998865 331100 1122222222 233456777777
Q ss_pred EEeCCCcEEEEEceecCCcceeeeeec----c----cCCceeEEEEeecCCCcEEEEeec-----------CCcEEEEEc
Q 038537 150 TCSSDGSVKIWRRVYRENSHTLTMTLK----F----QQSSVNALALSSFFDNYFLYSGSS-----------DGSINFWEK 210 (358)
Q Consensus 150 ~~~~dg~i~~wd~~~~~~~~~~~~~~~----~----~~~~i~~~~~~~~~~~~~l~~~~~-----------dg~i~i~d~ 210 (358)
..+.++.+.++|+.............. . .......++++| +++.++++.. .+.|.+||+
T Consensus 216 ~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~--dg~~lyv~~~~~~~~~~~~~~~~~v~viD~ 293 (361)
T 2oiz_A 216 FVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR--ASGRMYVFMHPDGKEGTHKFPAAEIWVMDT 293 (361)
T ss_dssp EEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET--TTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred EEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec--CCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence 788899999999854432111000000 0 011222378887 7777776543 347999999
Q ss_pred cCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecc
Q 038537 211 DKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
.+.+ ....+..+...-+.++|++++|++++. +.|.+||..+++. +.+..+..+......++++|+
T Consensus 294 ~t~~----~v~~i~~~~p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l--~~~~~i~~~G~~P~~~~~~p~ 358 (361)
T 2oiz_A 294 KTKQ----RVARIPGRDALSMTIDQQRNLMLTLDG-GNVNVYDISQPEP--KLLRTIEGAAEASLQVQFHPV 358 (361)
T ss_dssp TTTE----EEEEEECTTCCEEEEETTTTEEEEECS-SCEEEEECSSSSC--EEEEEETTSCSSEEEEEECCC
T ss_pred CCCc----EEEEEecCCeeEEEECCCCCEEEEeCC-CeEEEEECCCCcc--eeeEEeccCCCCcEEEEecCC
Confidence 8843 333333333455778899999998887 9999999999732 345665566677789999998
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=2.6e-13 Score=125.19 Aligned_cols=205 Identities=10% Similarity=-0.005 Sum_probs=138.8
Q ss_pred cCCCceEEEEEeCCCCEEEEEecCC-----eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc-----
Q 038537 87 QHRDCVSCMAFYHAEGLLYTGSFDK-----TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS----- 156 (358)
Q Consensus 87 ~h~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----- 156 (358)
+|...+..++|||||++|+.+..++ .|++||+.+++. ..... ....+..++|+||++.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~--~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKE--LPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSD 198 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEE--EEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC--Ccccc-cCcccceEEEEeCCCEEEEEEECCcccccc
Confidence 4555688999999999998776543 899999999873 22211 2223678999999999999988766
Q ss_pred -----------EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-----CCcEEEEEccC------Cc
Q 038537 157 -----------VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-----DGSINFWEKDK------MS 214 (358)
Q Consensus 157 -----------i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~------~~ 214 (358)
|++|++.++.....+......+...+..+.|+| ++++|+.++. +..|++||+.+ +.
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~ 276 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI 276 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS
T ss_pred ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEEEEccCCCccEEEEEECcccccccCCc
Confidence 999999765433333333333455577889988 9998888765 56899999876 22
Q ss_pred CCccccceeeccc-ceeEEEeeeCCEEEEeeC----CCeEEEEEcCCCceeeeeeeeecCccc--ceEEEEeecccceee
Q 038537 215 GGFNHGGFLQGHC-FAVLCLVAIEKLIFSGSE----DTTIRVWRRAEGGCYHECLAVLDGHRG--PVRCLAASLEMEKVV 287 (358)
Q Consensus 215 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~h~~--~v~~i~~~~~~~~~~ 287 (358)
... ..+..+. .....++++++.|+..+. ++.|.+||+.++.. .....+..|.. .+..++|+++
T Consensus 277 ~~~---~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~----- 346 (710)
T 2xdw_A 277 LKW---VKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE--SKWKVLVPEHEKDVLEWVACVRS----- 346 (710)
T ss_dssp CCC---EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSSCEEEEEEEETT-----
T ss_pred cce---EEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc--ccceeccCCCCCCeEEEEEEEcC-----
Confidence 111 1122222 223457788887776554 34699999987631 11233344443 6888999976
Q ss_pred eCeEEEEccCCCcEEEEEee
Q 038537 288 MGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 288 ~~~~l~s~~~dg~v~iw~~~ 307 (358)
+.++++...|+..+||-+.
T Consensus 347 -~~lv~~~~~~g~~~l~~~~ 365 (710)
T 2xdw_A 347 -NFLVLCYLHDVKNTLQLHD 365 (710)
T ss_dssp -TEEEEEEEETTEEEEEEEE
T ss_pred -CEEEEEEEECCEEEEEEEE
Confidence 7889999999976665444
No 185
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.63 E-value=6.4e-14 Score=128.91 Aligned_cols=242 Identities=9% Similarity=0.003 Sum_probs=149.0
Q ss_pred cccceEEEE--ecCCEEE-----EEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC
Q 038537 28 RHGEVRAIL--AHDNMLF-----TTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA 100 (358)
Q Consensus 28 h~~~v~~i~--~~~~~l~-----s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 100 (358)
|...+..+. +++++|+ .|+.+..|++||+.+++...... +... ....++|+|+
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~------------------~~~~--~~~~~~wspD 178 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV------------------IEGG--KYATPKWTPD 178 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC------------------BSCC--TTCCCEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc------------------cCcc--cccceEEecC
Confidence 444566554 4788887 44455789999999887531100 0111 1257899999
Q ss_pred CCEEEEEecCCe-------------EEEEEccCCccc--ccccccccccCeEEEEEcCCCCEEEEEeCCC----cEEEEE
Q 038537 101 EGLLYTGSFDKT-------------VKAWRVLDKRCT--CVDSFVAHESNVNAIVVNQDDGFVFTCSSDG----SVKIWR 161 (358)
Q Consensus 101 ~~~l~~~~~dg~-------------i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~wd 161 (358)
|+.|+.++.|.. |++|++.++... .+.....+...+..+.|+|+|++|+.++.++ .|++++
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~ 258 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKR 258 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEEC
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEc
Confidence 999999988766 999999877632 2233334556789999999999988887666 566665
Q ss_pred ceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEee---cCCcEEEEEccCCcCCccccceeecc-cceeEEEee-e
Q 038537 162 RVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS---SDGSINFWEKDKMSGGFNHGGFLQGH-CFAVLCLVA-I 236 (358)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 236 (358)
...+. . ..+..+...+....+ + ++.+++.+. .++.|.+||+.+.... ........+ ...+..+.+ +
T Consensus 259 ~~~~~-~----~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~l~~~~~~~ 329 (695)
T 2bkl_A 259 PGEKD-F----RLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARA-SWKEIVPEDSSASLLSVSIVG 329 (695)
T ss_dssp TTCSS-C----EEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGG-GCEEEECCCSSCEEEEEEEET
T ss_pred CCCCc-e----EEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCcc-CCeEEecCCCCCeEEEEEEEC
Confidence 43221 1 122223444455555 4 555444443 2578999998763210 011112222 333444444 4
Q ss_pred CCEEEEeeCCCeEEEEEcC-CCceeeeeeeeecCc-ccceEEEEeecccceeeeCeEEE----EccCCCcEEEEEeee
Q 038537 237 EKLIFSGSEDTTIRVWRRA-EGGCYHECLAVLDGH-RGPVRCLAASLEMEKVVMGFLVY----SSSLDQTFKVWRVKV 308 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~h-~~~v~~i~~~~~~~~~~~~~~l~----s~~~dg~v~iw~~~~ 308 (358)
+.++++...|+..++|.+. .+ +....+..+ .+.|..++++|+ +..++ +....+.|++||+..
T Consensus 330 ~~lv~~~~~dg~~~l~~~~~~g----~~~~~l~~~~~~~v~~~~~s~d------~~~l~~~~ss~~~P~~v~~~d~~~ 397 (695)
T 2bkl_A 330 GHLSLEYLKDATSEVRVATLKG----KPVRTVQLPGVGAASNLMGLED------LDDAYYVFTSFTTPRQIYKTSVST 397 (695)
T ss_dssp TEEEEEEEETTEEEEEEEETTC----CEEEECCCSSSSEECCCBSCTT------CSEEEEEEEETTEEEEEEEEETTT
T ss_pred CEEEEEEEECCEEEEEEEeCCC----CeeEEecCCCCeEEEEeecCCC------CCEEEEEEcCCCCCCEEEEEECCC
Confidence 5677788889988888655 23 223444444 667888899998 54555 444567899999864
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.62 E-value=1.8e-13 Score=126.01 Aligned_cols=205 Identities=9% Similarity=-0.007 Sum_probs=134.7
Q ss_pred ccCCCceEEEEEeCCCCEEEE-----EecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc----
Q 038537 86 QQHRDCVSCMAFYHAEGLLYT-----GSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS---- 156 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---- 156 (358)
.+|...+..++|||||++|+. |+.+..|++||+.+++......+.. .....++|+||++.|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCc
Confidence 356667999999999999883 4445689999999987310111111 11267899999999999988776
Q ss_pred ---------EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC----cEEEEEccCCcCCcccccee
Q 038537 157 ---------VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG----SINFWEKDKMSGGFNHGGFL 223 (358)
Q Consensus 157 ---------i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~ 223 (358)
|++|++.++.....+......+...+..+.++| ++++|+.++.++ .|.+++.... ... .+
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~--~~~---~l 267 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEK--DFR---LL 267 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCS--SCE---EE
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCC--ceE---Ee
Confidence 999999766543344444444556788899998 898888877666 5666654331 111 12
Q ss_pred ecccc-eeEEEeeeCCEEEEee---CCCeEEEEEcCCCceeeeeeeeecCc-ccceEEEEeecccceeeeCeEEEEccCC
Q 038537 224 QGHCF-AVLCLVAIEKLIFSGS---EDTTIRVWRRAEGGCYHECLAVLDGH-RGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 224 ~~~~~-~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~h-~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
..+.. ....+.+++.+++.+. .++.|.+||+.+++.. .....+..+ ...+..++|+ + +.++++...|
T Consensus 268 ~~~~~~~~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~l~~~~~~-~------~~lv~~~~~d 339 (695)
T 2bkl_A 268 VKGVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARA-SWKEIVPEDSSASLLSVSIV-G------GHLSLEYLKD 339 (695)
T ss_dssp EECSSCCEEEEEETTEEEEEECTTCTTCEEEEEBTTBCSGG-GCEEEECCCSSCEEEEEEEE-T------TEEEEEEEET
T ss_pred ecCCCceEEEEecCCcEEEEECCCCCCCEEEEEeCCCCCcc-CCeEEecCCCCCeEEEEEEE-C------CEEEEEEEEC
Confidence 22222 2222335666444433 3688999999876310 012222233 4567888888 4 6899999999
Q ss_pred CcEEEEEee
Q 038537 299 QTFKVWRVK 307 (358)
Q Consensus 299 g~v~iw~~~ 307 (358)
+..++|.+.
T Consensus 340 g~~~l~~~~ 348 (695)
T 2bkl_A 340 ATSEVRVAT 348 (695)
T ss_dssp TEEEEEEEE
T ss_pred CEEEEEEEe
Confidence 999999876
No 187
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.61 E-value=1.1e-14 Score=124.82 Aligned_cols=254 Identities=8% Similarity=-0.067 Sum_probs=152.0
Q ss_pred EEeCCCceeeeeeeecccc-----eE--EEEecCCEEEEEeCC---ceEEEEecccccccccccccccCCCceeeeecCC
Q 038537 13 VWRQPDCVERGFIKARHGE-----VR--AILAHDNMLFTTNKD---CKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82 (358)
Q Consensus 13 vw~~~~~~~~~~~~~h~~~-----v~--~i~~~~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
..|..+++.+..+..+... +. ++++++++|+.+... ..|.+||+.+++.....
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~----------------- 76 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT----------------- 76 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC-----------------
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee-----------------
Confidence 4477788777776655332 33 345678887766543 36888888776532210
Q ss_pred CccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEE-------------------EEEcC
Q 038537 83 NTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNA-------------------IVVNQ 143 (358)
Q Consensus 83 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~-------------------~~~~~ 143 (358)
.++......+.|+|+|+.|+.++.++.|++||+.+++...+ ...+...... +.|+|
T Consensus 77 ---~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp 151 (396)
T 3c5m_A 77 ---EGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP 151 (396)
T ss_dssp ---CSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC
T ss_pred ---cCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE--EecccccCCCCCEEEeccCCccccccccccccCC
Confidence 11222233478999999999999999999999988763222 2222222222 34567
Q ss_pred CCCEEEEE-----eCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC------CcEEEEEccC
Q 038537 144 DDGFVFTC-----SSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD------GSINFWEKDK 212 (358)
Q Consensus 144 ~~~~l~~~-----~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~ 212 (358)
+++.++.+ ..+..|.+||+.+++.. .+..+...+..+.|+| .++..|+..+.+ ..|.+||+..
T Consensus 152 dg~~~~~~~~~~~~~~~~l~~~d~~~g~~~-----~~~~~~~~~~~~~~sp-~dg~~l~~~~~~~~~~~~~~l~~~d~~~ 225 (396)
T 3c5m_A 152 LTSWEKFAEFYHTNPTCRLIKVDIETGELE-----VIHQDTAWLGHPIYRP-FDDSTVGFCHEGPHDLVDARMWLVNEDG 225 (396)
T ss_dssp CCSHHHHHHHHHTCCCEEEEEEETTTCCEE-----EEEEESSCEEEEEEET-TEEEEEEEEECSCSSSCSCCCEEEETTS
T ss_pred CCcceeeeeeccCCCcceEEEEECCCCcEE-----eeccCCcccccceECC-CCCCEEEEEecCCCCCCCceEEEEECCC
Confidence 77665544 35668999998654321 1123456788888986 135556655443 3688888765
Q ss_pred CcCCccccceeecccceeEEEeeeCCEEEEeeCC-----CeEEEEEcCCCceeeeeeeeecCcccceEEEEeec-cccee
Q 038537 213 MSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSED-----TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASL-EMEKV 286 (358)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~~ 286 (358)
... ................++|+++.|+.++.+ +.|++||+.+++. ..+....+ .. +.|+| +
T Consensus 226 ~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~----~~-~~~s~~d---- 293 (396)
T 3c5m_A 226 SNV-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN--EEVMVMPP----CS-HLMSNFD---- 293 (396)
T ss_dssp CCC-EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE--EEEEECCS----EE-EEEECSS----
T ss_pred Cce-eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe--EEeeeCCC----CC-CCccCCC----
Confidence 221 111110001112235778899877766543 4599999988753 22332222 23 88999 8
Q ss_pred eeCeEEEEcc----------------CCCcEEEEEeee
Q 038537 287 VMGFLVYSSS----------------LDQTFKVWRVKV 308 (358)
Q Consensus 287 ~~~~~l~s~~----------------~dg~v~iw~~~~ 308 (358)
++++++++ .++.|.+||+..
T Consensus 294 --g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 294 --GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp --SSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred --CceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 77777654 347899999864
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.61 E-value=1.8e-13 Score=110.90 Aligned_cols=183 Identities=7% Similarity=-0.014 Sum_probs=132.9
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecc-cceEEEE--ecCCEEEEEeCCceEEEEecccccccccccccccCCCceee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARH-GEVRAIL--AHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~-~~v~~i~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
+|++++.|+.|.+||.++++.+..+..+. ..+.++. +++++++ +.++.|..||. +++.++....
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~---------- 73 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAA---------- 73 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEEC----------
T ss_pred EEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcC----------
Confidence 47899999999999999999999988775 3555554 4677777 45778999998 6766654332
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEec-CCeEEEEEccCCccccccccc------ccccCeEEEEEcCCCCEEEE
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF-DKTVKAWRVLDKRCTCVDSFV------AHESNVNAIVVNQDDGFVFT 150 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~ 150 (358)
+....+.++.+.++|+.+++.+. ++.|..+|. +++ .+..+. .+......+.+.++++++++
T Consensus 74 ---------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk--~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~ 141 (276)
T 3no2_A 74 ---------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGE--VLSKTEFETGIERPHAQFRQINKNKKGNYLVP 141 (276)
T ss_dssp ---------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSC--EEEEEEECCSCSSGGGSCSCCEECTTSCEEEE
T ss_pred ---------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCC--EEEEEeccCCCCcccccccCceECCCCCEEEE
Confidence 12235788899999999998877 778888876 444 222221 12234556678899999999
Q ss_pred EeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCC
Q 038537 151 CSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGG 216 (358)
Q Consensus 151 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 216 (358)
...++.|..||.. ++..+++.. ...+.++...+ +++.++++..++.|..+|..+++..
T Consensus 142 ~~~~~~v~~~d~~-G~~~w~~~~-----~~~~~~~~~~~--~g~~~v~~~~~~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 142 LFATSEVREIAPN-GQLLNSVKL-----SGTPFSSAFLD--NGDCLVACGDAHCFVQLNLESNRIV 199 (276)
T ss_dssp ETTTTEEEEECTT-SCEEEEEEC-----SSCCCEEEECT--TSCEEEECBTTSEEEEECTTTCCEE
T ss_pred ecCCCEEEEECCC-CCEEEEEEC-----CCCccceeEcC--CCCEEEEeCCCCeEEEEeCcCCcEE
Confidence 9999999999986 554444332 23455666666 8999999988889999998875443
No 189
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.59 E-value=1e-11 Score=104.98 Aligned_cols=266 Identities=7% Similarity=-0.023 Sum_probs=166.0
Q ss_pred cEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEe----------CCceEEEEecccccccccccccccCCCceeeee
Q 038537 10 RIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTN----------KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 10 ~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
.|.++|..+++.+..+.....+-..+++++++++++. .++.|.+||..+.+...........
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~-------- 119 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP-------- 119 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcc--------
Confidence 7899999999988887765555456677898888875 3678999999876655433221000
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEec--CCeEEEEEccCCccccccc-ccccccCeEEEEEcCCC-CEEEEEeCCC
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSF--DKTVKAWRVLDKRCTCVDS-FVAHESNVNAIVVNQDD-GFVFTCSSDG 155 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg 155 (358)
. ..+......+.|+|+|++|+++.. ++.|.++| .+++ .+.. +.. .. ++.+.|++ +.+++.+.||
T Consensus 120 ---~--~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~--~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg 187 (373)
T 2mad_H 120 ---R--FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGS--SDDQLLSS-PT---CYHIHPGAPSTFYLLCAQG 187 (373)
T ss_pred ---c--cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCC--EEeEEcCC-Cc---eEEEEeCCCceEEEEcCCC
Confidence 0 001123457999999999998874 57899999 8887 4444 322 11 24444544 4566778899
Q ss_pred cEEEEEceecCCcceeee-eecccCCce-eEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccc----------cee
Q 038537 156 SVKIWRRVYRENSHTLTM-TLKFQQSSV-NALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG----------GFL 223 (358)
Q Consensus 156 ~i~~wd~~~~~~~~~~~~-~~~~~~~~i-~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----------~~~ 223 (358)
.+.++|. +++....... .......++ ....+.+ ++..++..+.++.+.+.|+.......... ...
T Consensus 188 ~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~ 264 (373)
T 2mad_H 188 GLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN--KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW 264 (373)
T ss_pred CEEEEEC-CCcEEEEEeccccccCCcceeecceeEe--cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccce
Confidence 9999998 5543321110 000111121 2234555 44444444467889999986532111000 000
Q ss_pred ecccceeEEEeeeCCEEEEeeC----------CCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCe-EE
Q 038537 224 QGHCFAVLCLVAIEKLIFSGSE----------DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGF-LV 292 (358)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~-~l 292 (358)
.........++++++.++++.. .+.|.++|..+. +.+..+.. .....+++|+|+ |+ ++
T Consensus 265 ~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~----~vv~~i~~-g~~p~~i~~s~D------g~~~l 333 (373)
T 2mad_H 265 RPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG----QTSSQISL-GHDVDAISVAQD------GGPDL 333 (373)
T ss_pred ecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC----EEEEEEEC-CCCcCeEEECCC------CCeEE
Confidence 1111223567888887777543 357999999998 44555532 235789999999 76 67
Q ss_pred EEcc-CCCcEEEEEeeeC
Q 038537 293 YSSS-LDQTFKVWRVKVM 309 (358)
Q Consensus 293 ~s~~-~dg~v~iw~~~~~ 309 (358)
+++. .++.|.++|+.+.
T Consensus 334 ~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 334 YALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EEEcCCCCeEEEEECCCC
Confidence 7776 5899999999864
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.59 E-value=1.2e-12 Score=109.16 Aligned_cols=223 Identities=13% Similarity=0.079 Sum_probs=143.2
Q ss_pred EeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe-cCCEEEEEe-CCceEEEEecccccccccccccccCCCceeeeec
Q 038537 3 FTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA-HDNMLFTTN-KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 3 ~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~-~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
++...++.|.+||..+++.+..+.. ......+.+ .++.++++. .++.|.+||..+.+..........
T Consensus 58 v~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~---------- 126 (328)
T 3dsm_A 58 IVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM---------- 126 (328)
T ss_dssp EEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC----------
T ss_pred EEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc----------
Confidence 4555678999999999999888753 345566655 333555555 899999999988765543222110
Q ss_pred CCCccccCCCceEEEEEeCCCCEEEEEe--cCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC----
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGLLYTGS--FDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD---- 154 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 154 (358)
.+.......+++ ++..|+.+. .++.|.++|..+++ .+..+.. ......+.++|++++++++..+
T Consensus 127 -----~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~--~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~ 196 (328)
T 3dsm_A 127 -----DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDK--VVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGS 196 (328)
T ss_dssp -----CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTE--EEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred -----cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCe--EEEEEEc-CCCccceEEcCCCCEEEEECCCccCC
Confidence 111123455666 344455554 48899999999887 3444432 2345688999999877776654
Q ss_pred ------CcEEEEEceecCCcceeeeeeccc-CCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceee--c
Q 038537 155 ------GSVKIWRRVYRENSHTLTMTLKFQ-QSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ--G 225 (358)
Q Consensus 155 ------g~i~~wd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~ 225 (358)
+.|.++|..+++.. ...... ......++++| +++.|+++.. .|.+||..+...... .... +
T Consensus 197 ~~~~~~~~v~~id~~t~~v~----~~~~~~~g~~p~~la~~~--d~~~lyv~~~--~v~~~d~~t~~~~~~--~~~~~~~ 266 (328)
T 3dsm_A 197 PYGYEAPSLYRIDAETFTVE----KQFKFKLGDWPSEVQLNG--TRDTLYWINN--DIWRMPVEADRVPVR--PFLEFRD 266 (328)
T ss_dssp SSCBCCCEEEEEETTTTEEE----EEEECCTTCCCEEEEECT--TSCEEEEESS--SEEEEETTCSSCCSS--CSBCCCS
T ss_pred ccccCCceEEEEECCCCeEE----EEEecCCCCCceeEEEec--CCCEEEEEcc--EEEEEECCCCceeee--eeecCCC
Confidence 78999998654322 222211 23678999998 8888887755 899999987443211 1111 1
Q ss_pred ccceeEEEee-eCCEEEEe----eCCCeEEEEEcCCC
Q 038537 226 HCFAVLCLVA-IEKLIFSG----SEDTTIRVWRRAEG 257 (358)
Q Consensus 226 ~~~~~~~~~~-~~~~l~~~----~~dg~i~iwd~~~~ 257 (358)
....-.+++| ++.++++. ..++.|.+||.. +
T Consensus 267 ~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g 302 (328)
T 3dsm_A 267 TKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G 302 (328)
T ss_dssp SCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-C
T ss_pred CceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-C
Confidence 2223356777 45566665 578999999998 6
No 191
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.59 E-value=1.5e-11 Score=101.01 Aligned_cols=258 Identities=9% Similarity=-0.022 Sum_probs=162.7
Q ss_pred eCCCcEEEEeCCCceeeeee-eecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCC
Q 038537 6 SSSTRIRVWRQPDCVERGFI-KARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82 (358)
Q Consensus 6 ~~dg~v~vw~~~~~~~~~~~-~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
..++.|.+||.. ++..... ..+...+.++..+ +.++++...++.|..|+.. ++. ....
T Consensus 33 ~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~---------------- 93 (299)
T 2z2n_A 33 HKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYT---------------- 93 (299)
T ss_dssp TTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEE----------------
T ss_pred cCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEe----------------
Confidence 346789999987 4433222 2344567778764 5566666668889999875 221 1110
Q ss_pred CccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 038537 83 NTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRR 162 (358)
Q Consensus 83 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 162 (358)
+......+.++++.+++.++++...++.|.+||. +++... .........+..+++++++.++++...++.|..||.
T Consensus 94 --~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 94 --LPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp --CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred --CCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence 0123446889999999988777777889999998 544211 122233457899999999988887777789999987
Q ss_pred eecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEeeeCCEE
Q 038537 163 VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLI 240 (358)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l 240 (358)
++.. .. .........+..+++.+ ++.++++...++.|..||. +.. .... ........+ +++++++++.
T Consensus 170 -~g~~-~~--~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~-~g~--~~~~-~~~~~~~~~~~i~~~~~g~l~ 239 (299)
T 2z2n_A 170 -SGDI-TE--FKIPTPASGPVGITKGN--DDALWFVEIIGNKIGRITT-SGE--ITEF-KIPTPNARPHAITAGAGIDLW 239 (299)
T ss_dssp -TCCE-EE--EECSSTTCCEEEEEECT--TSSEEEEETTTTEEEEECT-TCC--EEEE-ECSSTTCCEEEEEECSTTCEE
T ss_pred -CCcE-EE--eeCCCCCCcceeEEECC--CCCEEEEccCCceEEEECC-CCc--EEEE-ECCCCCCCceeEEECCCCCEE
Confidence 3321 11 11222345678888887 7887777667889999998 422 1110 111122233 4445667766
Q ss_pred EEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 241 FSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 241 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
++...++.|..||. .+.. . ...+..+...+.++++ ++ +.+.++.+ .+.|..++.+.
T Consensus 240 v~~~~~~~i~~~d~-~g~~--~-~~~~~~~~~~~~~i~~-~~------g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 240 FTEWGANKIGRLTS-NNII--E-EYPIQIKSAEPHGICF-DG------ETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp EEETTTTEEEEEET-TTEE--E-EEECSSSSCCEEEEEE-CS------SCEEEEET-TTEEEEEEEC-
T ss_pred EeccCCceEEEECC-CCce--E-EEeCCCCCCccceEEe-cC------CCEEEEec-CCcEEEEEcCc
Confidence 66657889999998 3421 1 2223345567899999 77 66766655 56677777653
No 192
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.58 E-value=3.3e-12 Score=106.70 Aligned_cols=271 Identities=11% Similarity=0.008 Sum_probs=169.5
Q ss_pred CCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEe----------CCceEEEEecccccccccccccccCCCceee
Q 038537 8 STRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTN----------KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
++.|.+.|..+++.+..+.....+-..+++++++++++. .++.|.+||..+.+......+..-. +
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~-r---- 132 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAP-R---- 132 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC-C----
T ss_pred CCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCcc-c----
Confidence 679999999999999888866655456677888887765 3678999999988766543321100 0
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEec--CCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF--DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG 155 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 155 (358)
.........+.|+|+|++++++.. ++.|.++|+.+.+ .+.++.... . ...+....+.+++.+.||
T Consensus 133 --------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~--vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG 199 (386)
T 3sjl_D 133 --------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA--FKRMLDVPD--C-YHIFPTAPDTFFMHCRDG 199 (386)
T ss_dssp --------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE--EEEEEECCS--E-EEEEEEETTEEEEEETTS
T ss_pred --------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc--EEEEEECCC--c-ceeecCCCceeEEECCCC
Confidence 001123457899999999988864 6899999999988 455553211 1 223333456777888899
Q ss_pred cEEEEEcee-cCCcceeeeeecccCCcee-EEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccc----------ee
Q 038537 156 SVKIWRRVY-RENSHTLTMTLKFQQSSVN-ALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGG----------FL 223 (358)
Q Consensus 156 ~i~~wd~~~-~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----------~~ 223 (358)
.+.+.++.. +.........+......+. ...|.+ .++.+++ .+.+|.+++.|+........... ..
T Consensus 200 ~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~-~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~ 277 (386)
T 3sjl_D 200 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGW 277 (386)
T ss_dssp CEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-TTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTE
T ss_pred CEEEEECCCCCeEEEeecceeccccccccccceeEc-CCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccc
Confidence 999988865 3321111001111112221 235542 2665544 45589999999876321111000 01
Q ss_pred ecccceeEEEeeeCCEEEEeeC----------CCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCe-E-
Q 038537 224 QGHCFAVLCLVAIEKLIFSGSE----------DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGF-L- 291 (358)
Q Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~-~- 291 (358)
........+++++++.++.... .+.|.++|+.+.+ .+..+.- ...+.+|.++++ ++ +
T Consensus 278 ~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k----v~~~i~v-g~~~~~lavs~D------~~~~l 346 (386)
T 3sjl_D 278 RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE----RLAKFEM-GHEIDSINVSQD------EKPLL 346 (386)
T ss_dssp EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC----EEEEEEE-EEEECEEEECSS------SSCEE
T ss_pred cCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe----EEEEEEC-CCCcceEEECCC------CCeEE
Confidence 1222334677888877776542 2579999999985 3444332 236789999999 54 4
Q ss_pred EEEccCCCcEEEEEeeeC
Q 038537 292 VYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 292 l~s~~~dg~v~iw~~~~~ 309 (358)
+++...++.|.++|..+.
T Consensus 347 y~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 347 YALSTGDKTLYIHDAESG 364 (386)
T ss_dssp EEEETTTTEEEEEETTTC
T ss_pred EEEcCCCCeEEEEECCCC
Confidence 455667999999998754
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.58 E-value=1e-12 Score=107.95 Aligned_cols=224 Identities=7% Similarity=0.053 Sum_probs=144.1
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+++++..++.|..||..++ ...+..+...+.++.+ +++++++...++.|.+||..+++........
T Consensus 42 l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~---------- 109 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSF---------- 109 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEE----------
T ss_pred EEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeecc----------
Confidence 3677888899999999877 5666667777888877 4666666666789999998766532211000
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEE----Eec-------------CCeEEEEEccCCcccccccccccccCeEEEEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYT----GSF-------------DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVV 141 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 141 (358)
.......+..++++|+|+++++ |+. .+.|..++.. ++ ...+..+......++|
T Consensus 110 ------~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~~~~~~~~~~~~gi~~ 179 (296)
T 3e5z_A 110 ------EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT---LSAPIRDRVKPNGLAF 179 (296)
T ss_dssp ------TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC---EEEEECCCSSEEEEEE
T ss_pred ------CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC---EEEeecCCCCCccEEE
Confidence 0111234678999999998887 331 2455555554 33 3334455667899999
Q ss_pred cCCCCEEEEEeCCCcEEEEEceecCCc-ceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccc
Q 038537 142 NQDDGFVFTCSSDGSVKIWRRVYRENS-HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHG 220 (358)
Q Consensus 142 ~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 220 (358)
+|+++.+++.+.++.|.+|++...... .. ...+..+...+..+++++ +++++++. ++.|.+||... . ..
T Consensus 180 s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~-~~~~~~~~~~p~~i~~d~--~G~l~v~~--~~~v~~~~~~g-~----~~ 249 (296)
T 3e5z_A 180 LPSGNLLVSDTGDNATHRYCLNARGETEYQ-GVHFTVEPGKTDGLRVDA--GGLIWASA--GDGVHVLTPDG-D----EL 249 (296)
T ss_dssp CTTSCEEEEETTTTEEEEEEECSSSCEEEE-EEEECCSSSCCCSEEEBT--TSCEEEEE--TTEEEEECTTS-C----EE
T ss_pred CCCCCEEEEeCCCCeEEEEEECCCCcCcCC-CeEeeCCCCCCCeEEECC--CCCEEEEc--CCeEEEECCCC-C----EE
Confidence 999998877777899999998622111 11 111133456678899987 88766665 78899999763 1 11
Q ss_pred ceeeccc-ceeEEE-eeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 221 GFLQGHC-FAVLCL-VAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 221 ~~~~~~~-~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
..+..+. ....++ .++++.|++++.++ +.-++..+.
T Consensus 250 ~~~~~~~~~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 250 GRVLTPQTTSNLCFGGPEGRTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EEEECSSCCCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred EEEECCCCceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence 2222222 222344 35777888887764 555666665
No 194
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.57 E-value=3e-12 Score=106.81 Aligned_cols=232 Identities=8% Similarity=-0.029 Sum_probs=145.1
Q ss_pred CcEEEEeCCCceeeeeee-ecccceEEEEe--cCCEEEEEeCCceEEEEeccccc-ccccccccccCCCceeeeecCCCc
Q 038537 9 TRIRVWRQPDCVERGFIK-ARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSD-NFRTKKVTTLPRRSSFLSFSKSNT 84 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~-~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
+.|.+||..+++.+..+. ++-.....+++ +++++++...++.|++|+.+... .+........+ ..
T Consensus 69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~-----------g~ 137 (329)
T 3fvz_A 69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP-----------GS 137 (329)
T ss_dssp CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC-----------CC
T ss_pred CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC-----------CC
Confidence 479999998888766554 33345666766 56788888889999999986542 22111100000 00
Q ss_pred cccCCCceEEEEEeC-CCCEEEEEe-cCCeEEEEEccCCcccccccccc----------cccCeEEEEEcCC-CCEEEEE
Q 038537 85 QQQHRDCVSCMAFYH-AEGLLYTGS-FDKTVKAWRVLDKRCTCVDSFVA----------HESNVNAIVVNQD-DGFVFTC 151 (358)
Q Consensus 85 ~~~h~~~v~~~~~~~-~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~ 151 (358)
-.++......++++| ++.++++.+ .++.|++|+. +++ .+..+.. +-.....++++|+ +.++++.
T Consensus 138 ~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d 214 (329)
T 3fvz_A 138 DQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGK--FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVAD 214 (329)
T ss_dssp STTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSC--EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEE
T ss_pred CccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCC--EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEE
Confidence 023455689999999 788777776 6899999994 444 3333321 2234899999998 7777777
Q ss_pred eCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeec----CCCcEEEEeecCCcEEEEEccCCcCCccccceeeccc
Q 038537 152 SSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSF----FDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC 227 (358)
Q Consensus 152 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 227 (358)
..++.|++||..+++....+ ....+...+..+++.|. .+++.+++...+..|++||..++....... ...++.
T Consensus 215 ~~~~~I~~~~~~~G~~~~~~--~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~-~~~~~~ 291 (329)
T 3fvz_A 215 RENGRIQCFKTDTKEFVREI--KHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK-PVRKHF 291 (329)
T ss_dssp TTTTEEEEEETTTCCEEEEE--CCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC-CSSSCC
T ss_pred CCCCEEEEEECCCCcEEEEE--eccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc-CCCCcc
Confidence 78899999998644322222 11234456777777750 022223333345589999987743221110 001222
Q ss_pred c--eeEEEeeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 228 F--AVLCLVAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 228 ~--~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
. .-+++++++.++++...++.|++|++...
T Consensus 292 ~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 292 DMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp SSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 2 23567788888888889999999998643
No 195
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.54 E-value=2.4e-12 Score=119.25 Aligned_cols=204 Identities=13% Similarity=0.008 Sum_probs=134.0
Q ss_pred cCCCceEEEEEeCCCCEEEEEecC-----CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc-----
Q 038537 87 QHRDCVSCMAFYHAEGLLYTGSFD-----KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS----- 156 (358)
Q Consensus 87 ~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----- 156 (358)
+|...+..++|||||++|+.++.+ ..|++||+.+++. +.. ..+...+..++|+|| +.|+.+..++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~--~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKP--LAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCE--EEE-EEEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCC--CCc-cCCCceeccEEEECC-CEEEEEEecCcccccc
Confidence 344568899999999999887654 4699999999873 221 112222357899999 98888877654
Q ss_pred ---------EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC-----cEEEEEccCCcCCccccce
Q 038537 157 ---------VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG-----SINFWEKDKMSGGFNHGGF 222 (358)
Q Consensus 157 ---------i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~ 222 (358)
|++|++.++.....+......+...+..+.|+| ++++|+..+.++ .|++||+.++... ....
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~ 311 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTNGKIG--PVTA 311 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEETTEEC--CCEE
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCCCCCc--ccEE
Confidence 888988655433333333333334578888988 999888877654 8999998764111 0111
Q ss_pred eecc-cceeEEEeeeCCEEEEeeC----CCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccC
Q 038537 223 LQGH-CFAVLCLVAIEKLIFSGSE----DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSL 297 (358)
Q Consensus 223 ~~~~-~~~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~ 297 (358)
+..+ ......+.++++.|+..+. ++.|.+||+.++. .+....+..+...+..+++. + +.++++...
T Consensus 312 l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~-~------~~lv~~~~~ 382 (741)
T 1yr2_A 312 LIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIA-G------NRLFASYIH 382 (741)
T ss_dssp EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEE-B------TEEEEEEEE
T ss_pred ecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEE-C------CEEEEEEEE
Confidence 2222 2223334688888877665 4569999988742 02233344555567778887 3 678999999
Q ss_pred CCcEEEEEee
Q 038537 298 DQTFKVWRVK 307 (358)
Q Consensus 298 dg~v~iw~~~ 307 (358)
|+..+||.+.
T Consensus 383 dg~~~l~~~~ 392 (741)
T 1yr2_A 383 DAKSQVLAFD 392 (741)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEe
Confidence 9999998876
No 196
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.54 E-value=1.4e-11 Score=102.89 Aligned_cols=216 Identities=11% Similarity=0.017 Sum_probs=135.9
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec--CCEEEEEeCC----ceEEEEecccccccccccccccCCCce
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH--DNMLFTTNKD----CKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
++++..++.|.+||..+++.......+...+.++.++ ++++++...+ +.|.+||..+........ .
T Consensus 59 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~--~------ 130 (333)
T 2dg1_A 59 FLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE--D------ 130 (333)
T ss_dssp EEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC--S------
T ss_pred EEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc--c------
Confidence 4567788999999998887665554566778888774 5566666555 689999987665321100 0
Q ss_pred eeeecCCCccccCCCceEEEEEeCCCCEEEEEec------CCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEE
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF------DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVF 149 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 149 (358)
..+...+.+++++|+++++++... .+.|..+|..+++. ..+......+..++|+|+++.++
T Consensus 131 ----------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~i~~~~dg~~l~ 197 (333)
T 2dg1_A 131 ----------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV---TPIIQNISVANGIALSTDEKVLW 197 (333)
T ss_dssp ----------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE---EEEEEEESSEEEEEECTTSSEEE
T ss_pred ----------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE---EEeecCCCcccceEECCCCCEEE
Confidence 123456899999999987776553 35666666655442 22223344678999999998665
Q ss_pred E-EeCCCcEEEEEceec-CCcceee----eeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccccee
Q 038537 150 T-CSSDGSVKIWRRVYR-ENSHTLT----MTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFL 223 (358)
Q Consensus 150 ~-~~~dg~i~~wd~~~~-~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 223 (358)
. .+.++.|.+||+... .....+. ..... ...+..+++++ +++++++...++.|.+||... . ....+
T Consensus 198 v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~--~G~l~v~~~~~~~v~~~d~~g-~----~~~~~ 269 (333)
T 2dg1_A 198 VTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDS--DDNLYVAMYGQGRVLVFNKRG-Y----PIGQI 269 (333)
T ss_dssp EEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBT--TCCEEEEEETTTEEEEECTTS-C----EEEEE
T ss_pred EEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCceEECC--CCCEEEEEcCCCEEEEECCCC-C----EEEEE
Confidence 4 456789999998642 2111111 11111 13677888887 888888877789999999743 1 11112
Q ss_pred ecc--------cceeEEEeeeCCEEEEeeCC
Q 038537 224 QGH--------CFAVLCLVAIEKLIFSGSED 246 (358)
Q Consensus 224 ~~~--------~~~~~~~~~~~~~l~~~~~d 246 (358)
... ...-.+++++++.|+.++.+
T Consensus 270 ~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 270 LIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp ECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 111 12335566777677666555
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=2.5e-11 Score=99.61 Aligned_cols=237 Identities=11% Similarity=0.010 Sum_probs=155.5
Q ss_pred cccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEE
Q 038537 28 RHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLY 105 (358)
Q Consensus 28 h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 105 (358)
+...+.++..+ ++.+++...++.|.+||.. +.... ... ..+...+.++++.+++.+++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-~~~------------------~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-YPL------------------PTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-EEC------------------SSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-ecC------------------CcccCceeeEEECCCCCEEE
Confidence 34567777764 5555555557899999987 43211 110 12335688999999998877
Q ss_pred EEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEE
Q 038537 106 TGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNAL 185 (358)
Q Consensus 106 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~ 185 (358)
+...++.|..||.. ++. ....+......+.++++++++.++++...++.|..||. ++.. .. .........+..+
T Consensus 73 ~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~--~~~~~~~~~~~~i 146 (299)
T 2z2n_A 73 TENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI-RE--YELPNKGSYPSFI 146 (299)
T ss_dssp EETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE-EE--EECSSTTCCEEEE
T ss_pred eCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE-EE--ecCCCCCCCCceE
Confidence 77768899999976 331 11112224457899999999988888777889999987 3321 11 1122234567888
Q ss_pred EEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccce--eEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeee
Q 038537 186 ALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFA--VLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHEC 263 (358)
Q Consensus 186 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 263 (358)
++.+ ++.++++...++.|..||. +... ... ........ -.++.+++++.++...++.|.+||. +++. .
T Consensus 147 ~~~~--~g~l~v~~~~~~~i~~~~~-~g~~--~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~--~- 216 (299)
T 2z2n_A 147 TLGS--DNALWFTENQNNAIGRITE-SGDI--TEF-KIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI--T- 216 (299)
T ss_dssp EECT--TSCEEEEETTTTEEEEECT-TCCE--EEE-ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE--E-
T ss_pred EEcC--CCCEEEEeCCCCEEEEEcC-CCcE--EEe-eCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcE--E-
Confidence 8887 7877777767789999998 4221 110 01111222 3455667777777667889999999 5532 1
Q ss_pred eeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 264 LAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 264 ~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
......+...+.+++++++ |.++++...++.|..||.
T Consensus 217 ~~~~~~~~~~~~~i~~~~~------g~l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 217 EFKIPTPNARPHAITAGAG------IDLWFTEWGANKIGRLTS 253 (299)
T ss_dssp EEECSSTTCCEEEEEECST------TCEEEEETTTTEEEEEET
T ss_pred EEECCCCCCCceeEEECCC------CCEEEeccCCceEEEECC
Confidence 1223345567899999998 777777767889999987
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.54 E-value=2.4e-12 Score=104.23 Aligned_cols=222 Identities=5% Similarity=-0.053 Sum_probs=140.6
Q ss_pred eeeCCCcEEEEeCCCceeeeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecC
Q 038537 4 TGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSK 81 (358)
Q Consensus 4 tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
+.+.++.|.+||..+.........+...+.++.++ ++++++.. ++.|.+||......... .
T Consensus 41 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~-~--------------- 103 (270)
T 1rwi_B 41 SEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL-P--------------- 103 (270)
T ss_dssp ECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC-C---------------
T ss_pred ccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee-e---------------
Confidence 33667889999876554332222333455666664 55555444 88999999875432210 0
Q ss_pred CCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038537 82 SNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWR 161 (358)
Q Consensus 82 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 161 (358)
......+.+++++++++++++...++.|.+|+..+.. ...........+.+++++++++++++...++.|.+||
T Consensus 104 ----~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 104 ----FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT--QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp ----CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCS--CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ----cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCce--eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 1122457899999999877777778899999765443 2221222334678899999999777777788999999
Q ss_pred ceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec-ccceeEEEeeeCCEE
Q 038537 162 RVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG-HCFAVLCLVAIEKLI 240 (358)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 240 (358)
...... ..........+..+++++ ++.++++...++.|.+||......... ...+ ....-++++++++++
T Consensus 178 ~~~~~~----~~~~~~~~~~p~~i~~d~--~g~l~v~~~~~~~v~~~~~~~~~~~~~---~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 178 AESNNQ----VVLPFTDITAPWGIAVDE--AGTVYVTEHNTNQVVKLLAGSTTSTVL---PFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp TTTCCE----EECCCSSCCSEEEEEECT--TCCEEEEETTTSCEEEECTTCSCCEEC---CCCSCSCEEEEEECTTCCEE
T ss_pred cCCCce----EeecccCCCCceEEEECC--CCCEEEEECCCCcEEEEcCCCCcceee---ccCCCCCceeEEECCCCCEE
Confidence 754321 111112225678899987 787777777788999999865321111 0111 112335566778888
Q ss_pred EEeeCCCeEEEEEcCCC
Q 038537 241 FSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 241 ~~~~~dg~i~iwd~~~~ 257 (358)
++...++.|++++....
T Consensus 249 v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 249 VADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEGGGTEEEEECCCGG
T ss_pred EEECCCCEEEEEcCCCc
Confidence 88889999999998765
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.53 E-value=3.8e-12 Score=105.41 Aligned_cols=242 Identities=8% Similarity=0.011 Sum_probs=149.0
Q ss_pred ceEEEEe--cCCEEEE-------EeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC-
Q 038537 31 EVRAILA--HDNMLFT-------TNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA- 100 (358)
Q Consensus 31 ~v~~i~~--~~~~l~s-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 100 (358)
...++.+ ++.++++ +..++.|.+||..+++...... + ...++...+.+++++++
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~----~------------~~~~~~~~~~~i~~~~~~ 82 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK----P------------EVNGYGGIPAGCQCDRDA 82 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC----C------------EETTEECCEEEEEECSSS
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe----c------------ccCCCCCCCceEEEecCC
Confidence 4456666 4556666 5778899999987665321100 0 00224456899999998
Q ss_pred CCEEEEEecCCeEEEEEccCCccccc-cccc--ccccCeEEEEEcCCCCEEEEEeCC---------------CcEEEEEc
Q 038537 101 EGLLYTGSFDKTVKAWRVLDKRCTCV-DSFV--AHESNVNAIVVNQDDGFVFTCSSD---------------GSVKIWRR 162 (358)
Q Consensus 101 ~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~--~~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~~wd~ 162 (358)
++++++ +..+.|.+||.. ++.... .... .....+.+++++++++++++...+ +.|..+|.
T Consensus 83 g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (314)
T 1pjx_A 83 NQLFVA-DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp SEEEEE-ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred CcEEEE-ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECC
Confidence 664444 444579999987 653222 1111 112458899999999888776655 45666664
Q ss_pred eecCCcceeeeeecccCCceeEEEEe----ecCCCcEEEEe-ecCCcEEEEEccC-CcCC-ccccceeeccc-c--eeEE
Q 038537 163 VYRENSHTLTMTLKFQQSSVNALALS----SFFDNYFLYSG-SSDGSINFWEKDK-MSGG-FNHGGFLQGHC-F--AVLC 232 (358)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~l~~~-~~dg~i~i~d~~~-~~~~-~~~~~~~~~~~-~--~~~~ 232 (358)
. ++ ... ...+......++++ + +++.++.+ ..++.|.+||+.. .... ......+..+. . .-.+
T Consensus 161 ~-g~----~~~-~~~~~~~~~~i~~~~~~d~--dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~ 232 (314)
T 1pjx_A 161 D-GQ----MIQ-VDTAFQFPNGIAVRHMNDG--RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD 232 (314)
T ss_dssp T-SC----EEE-EEEEESSEEEEEEEECTTS--CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE
T ss_pred C-CC----EEE-eccCCCCcceEEEecccCC--CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE
Confidence 3 21 111 11123456788888 7 77655544 5678999999762 1100 00111111111 1 2245
Q ss_pred EeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCe-EEEEccCCCcEEEEEeee
Q 038537 233 LVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGF-LVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 233 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~-~l~s~~~dg~v~iw~~~~ 308 (358)
++++++++++...++.|.+||..+++ .+..+..+...+.+++++|+ ++ ++++...++.|..|++..
T Consensus 233 ~d~~G~l~v~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~i~~~~d------g~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 233 FDEDNNLLVANWGSSHIEVFGPDGGQ----PKMRIRCPFEKPSNLHFKPQ------TKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EBTTCCEEEEEETTTEEEEECTTCBS----CSEEEECSSSCEEEEEECTT------SSEEEEEETTTTEEEEEECSS
T ss_pred ECCCCCEEEEEcCCCEEEEEcCCCCc----EeEEEeCCCCCceeEEECCC------CCEEEEEeCCCCeEEEEeCCC
Confidence 56778888887788899999998663 34444556678999999998 66 556666778999998864
No 200
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.53 E-value=6.2e-11 Score=97.31 Aligned_cols=258 Identities=10% Similarity=0.021 Sum_probs=160.5
Q ss_pred eeeCCCcEEEEeCCCceeeee-eeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 4 TGSSSTRIRVWRQPDCVERGF-IKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 4 tg~~dg~v~vw~~~~~~~~~~-~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
+...++.|.+||.. ++.... +..+...+.++..+ ++++++...++.|..||.. ++.. ...
T Consensus 36 ~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~-------------- 98 (300)
T 2qc5_A 36 TQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYP-------------- 98 (300)
T ss_dssp EETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEE--------------
T ss_pred EcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-Eec--------------
Confidence 33457889999977 444321 22233567777764 5566655567889999877 4321 111
Q ss_pred CCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW 160 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 160 (358)
+......+.++++.+++.++++...++.|..+|.. ++.. ...+......+..+++.+++++.++...++.|..+
T Consensus 99 ----~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 99 ----LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp ----CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred ----CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 01123558899999999877777668899999987 5421 11222234678999999999977766667889999
Q ss_pred EceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEeeeCC
Q 038537 161 RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEK 238 (358)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 238 (358)
|. .+.. .. .........+..+++.+ ++.++++....+.|.+||... . .... ........+ ++++++++
T Consensus 173 ~~-~g~~-~~--~~~~~~~~~~~~i~~d~--~g~l~v~~~~~~~i~~~~~~g-~--~~~~-~~~~~~~~~~~i~~d~~g~ 242 (300)
T 2qc5_A 173 TN-TGKL-EE--YPLPTNAAAPVGITSGN--DGALWFVEIMGNKIGRITTTG-E--ISEY-DIPTPNARPHAITAGKNSE 242 (300)
T ss_dssp CT-TCCE-EE--EECSSTTCCEEEEEECT--TSSEEEEETTTTEEEEECTTC-C--EEEE-ECSSTTCCEEEEEECSTTC
T ss_pred CC-CCcE-EE--eeCCCCCCCcceEEECC--CCCEEEEccCCCEEEEEcCCC-c--EEEE-ECCCCCCCceEEEECCCCC
Confidence 87 3221 11 11222345678888887 787777766677899999732 1 1110 011122223 44556677
Q ss_pred EEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 239 LIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 239 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
+.++...++.|..||.. +.. ....+......+.++++.++ |.+.++.. . .|..+|.
T Consensus 243 l~v~~~~~~~i~~~~~~-g~~---~~~~~~~~~~~~~~i~~~~~------g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 243 IWFTEWGANQIGRITND-NTI---QEYQLQTENAEPHGITFGKD------GSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEEEETTTTEEEEECTT-SCE---EEEECCSTTCCCCCEEECTT------SCEEEECS-S-EEEEEEE
T ss_pred EEEeccCCCeEEEECCC-CcE---EEEECCccCCccceeEeCCC------CCEEEEcc-C-ceEEeCC
Confidence 66666667899999984 421 12223334556889999998 77666665 4 6666654
No 201
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.49 E-value=2.7e-11 Score=107.68 Aligned_cols=238 Identities=11% Similarity=0.058 Sum_probs=151.7
Q ss_pred cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEE
Q 038537 38 HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWR 117 (358)
Q Consensus 38 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 117 (358)
.+..+++...++.|.++|..+++.+.... ....+..+.|+|+++++++++.|+.|.+||
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~---------------------~g~~p~~v~~SpDGr~lyv~~~dg~V~viD 224 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLD---------------------TGYAVHISRLSASGRYLFVIGRDGKVNMID 224 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEE---------------------CSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEe---------------------CCCCccceEECCCCCEEEEEcCCCeEEEEE
Confidence 34466777789999999999887664322 122466899999999999999999999999
Q ss_pred cc--CCcccccccccccccCeEEEEEc----CCCCEEEEEeC-CCcEEEEEceecCCcceeeeeec------cc-CCcee
Q 038537 118 VL--DKRCTCVDSFVAHESNVNAIVVN----QDDGFVFTCSS-DGSVKIWRRVYRENSHTLTMTLK------FQ-QSSVN 183 (358)
Q Consensus 118 ~~--~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~------~~-~~~i~ 183 (358)
+. +.+ .+..+.. ......++|+ |+|++++++.. ++.|.++|..+.+....+..... .| ...+.
T Consensus 225 ~~~~t~~--~v~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva 301 (567)
T 1qks_A 225 LWMKEPT--TVAEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 301 (567)
T ss_dssp TTSSSCC--EEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred CCCCCCc--EeEEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence 96 554 4555543 3346789999 69998887765 59999999866544333321110 11 12566
Q ss_pred EEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEee-CCCeEEEEEcCCCceeee
Q 038537 184 ALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGS-EDTTIRVWRRAEGGCYHE 262 (358)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 262 (358)
.+..++ ....+++....+|.|.++|....... .......+....-..+++++++++++. .++.|.++|+.+++....
T Consensus 302 ~i~~s~-~~~~~vv~~~~~g~v~~vd~~~~~~~-~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~ 379 (567)
T 1qks_A 302 AILASH-YRPEFIVNVKETGKILLVDYTDLNNL-KTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI 379 (567)
T ss_dssp EEEECS-SSSEEEEEETTTTEEEEEETTCSSEE-EEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEEEcC-CCCEEEEEecCCCeEEEEecCCCccc-eeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEE
Confidence 777776 23445566667899999998763211 000000111112246788898877655 678999999999854222
Q ss_pred eeee--ecCcccceEEEEeecccceeeeCeEEEEcc-CCCcEEEEEeee
Q 038537 263 CLAV--LDGHRGPVRCLAASLEMEKVVMGFLVYSSS-LDQTFKVWRVKV 308 (358)
Q Consensus 263 ~~~~--~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~-~dg~v~iw~~~~ 308 (358)
+.. ...|.+.-..+ ++|+. +...+++. .++.|.++|...
T Consensus 380 -i~vgg~~Phpg~g~~~-~~p~~-----g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 380 -EDTGGQTPHPGRGANF-VHPTF-----GPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp -EECSSSSBCCTTCEEE-EETTT-----EEEEEEEBSSSSEEEEEECCT
T ss_pred -EeccCcCCCCccceee-ECCCC-----CcEEEeCCCCCCeEEEecCCC
Confidence 111 12354322222 57762 33445543 568999999875
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.49 E-value=6.3e-13 Score=111.50 Aligned_cols=163 Identities=15% Similarity=0.075 Sum_probs=115.9
Q ss_pred CEEeeeCCCcEEEEeCCCce---------e-eeeeeecccceEEEEecCCEEEEEeCCceEEEEeccccccccccccccc
Q 038537 1 MVFTGSSSTRIRVWRQPDCV---------E-RGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~---------~-~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 70 (358)
++++|+.++ +++|++.+.+ . ......+.. |..+.+++++|+++ .++.|++||+.+.....
T Consensus 51 ll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~~------- 120 (388)
T 1xip_A 51 LFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDLEELSEFR------- 120 (388)
T ss_dssp EEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEE-ESSEEEEEESSSTTCEE-------
T ss_pred EEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEchhhhccC-------
Confidence 467888875 6679865433 1 112334566 99999988899988 88999999998655322
Q ss_pred CCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEE
Q 038537 71 PRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFT 150 (358)
Q Consensus 71 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 150 (358)
....|...+.++.+.+. .+++++.||.|.+||+.++.. . .+...|+|++|+|+| ++.
T Consensus 121 -------------~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~--~----~~~~~Vs~v~WSpkG--~~v 177 (388)
T 1xip_A 121 -------------TVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST--K----QLAQNVTSFDVTNSQ--LAV 177 (388)
T ss_dssp -------------EEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE--E----EEEESEEEEEECSSE--EEE
T ss_pred -------------ccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc--c----cccCCceEEEEcCCc--eEE
Confidence 11345666778777654 388899999999999987762 2 145689999999999 788
Q ss_pred EeCCCcEEEEEceecCC--cceeeee--ec---ccCCceeEEEEeecCCCcEEEE
Q 038537 151 CSSDGSVKIWRRVYREN--SHTLTMT--LK---FQQSSVNALALSSFFDNYFLYS 198 (358)
Q Consensus 151 ~~~dg~i~~wd~~~~~~--~~~~~~~--~~---~~~~~i~~~~~~~~~~~~~l~~ 198 (358)
|..||.+++|+...... ...+... +. .|...|.++.|.+ ++.++++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~--~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILS--PQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESS--SSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEec--CCeEEEE
Confidence 99999999998765442 1122111 12 3578899999997 7777765
No 203
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.48 E-value=3.4e-11 Score=102.47 Aligned_cols=269 Identities=11% Similarity=0.005 Sum_probs=167.7
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEe----------CCceEEEEecccccccccccccccCCCceeee
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTN----------KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+.|.+.|..+.+.+..+.....+=..+++++++++++. .++.|.++|..+.+.+....+....
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~------- 171 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP------- 171 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC-------
T ss_pred CeEEEEECCCCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc-------
Confidence 79999999999999988866556335566788777775 4678999999988776544321000
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEec--CCeEEEEEccCCcccccccccccccCeEEEEEcCC-CCEEEEEeCCC
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF--DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD-DGFVFTCSSDG 155 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg 155 (358)
. .........+.++|+|++|+.+.. ++.|.+.|+.+.+ .+..+.... . ....|+ ...+++.+.||
T Consensus 172 -----r-~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k--vv~~I~v~g--~--~~~~p~g~~~~v~~~~dG 239 (426)
T 3c75_H 172 -----R-FLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT--FDRMLDVPD--C--YHIFPASPTVFYMNCRDG 239 (426)
T ss_dssp -----C-CCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE--EEEEEECCS--E--EEEEEEETTEEEEEETTS
T ss_pred -----c-cccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe--EEEEEEcCC--c--eeeccCCCcEEEEEcCCC
Confidence 0 001122456899999999998874 5789999999887 444443211 1 223332 35666777788
Q ss_pred cEEEEEceecCCcceeeeeecccCCce-eEEEEeecCCCcEEEEeecCCcEEEEEccCCcCC----cccc------ceee
Q 038537 156 SVKIWRRVYRENSHTLTMTLKFQQSSV-NALALSSFFDNYFLYSGSSDGSINFWEKDKMSGG----FNHG------GFLQ 224 (358)
Q Consensus 156 ~i~~wd~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~------~~~~ 224 (358)
.+.+.++.+++........+.....++ ..+.+.+ ++..++.....+.+.+.|+...... .... ....
T Consensus 240 ~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~--dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~ 317 (426)
T 3c75_H 240 SLARVDFADGETKVTNTEVFHTEDELLINHPAFSL--RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWR 317 (426)
T ss_dssp SEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECT--TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred CEEEEECCCCcEEEEeeeeeccCCCceeeEeeecC--CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence 888887733322211000111111111 2345565 6676666677889999998642210 0000 0011
Q ss_pred cccceeEEEeeeCCEEEEeeC----------CCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCe-EEE
Q 038537 225 GHCFAVLCLVAIEKLIFSGSE----------DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGF-LVY 293 (358)
Q Consensus 225 ~~~~~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~-~l~ 293 (358)
........++++++.+++... ++.|.++|..+.+ .+..+... ....+|.|+|+ ++ +++
T Consensus 318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k----vv~~I~vg-~~P~gia~spD------g~~~ly 386 (426)
T 3c75_H 318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE----RINKIELG-HEIDSINVSQD------AEPLLY 386 (426)
T ss_dssp ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC----EEEEEEEE-EEECEEEECCS------SSCEEE
T ss_pred cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe----EEEEEECC-CCcCeEEEccC------CCEEEE
Confidence 111223578888887766542 3579999999984 45444322 24789999999 76 666
Q ss_pred Ecc-CCCcEEEEEeeeC
Q 038537 294 SSS-LDQTFKVWRVKVM 309 (358)
Q Consensus 294 s~~-~dg~v~iw~~~~~ 309 (358)
++. .++.|.++|+.+.
T Consensus 387 v~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 387 ALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EEETTTTEEEEEETTTC
T ss_pred EEcCCCCeEEEEECCCC
Confidence 666 6999999999854
No 204
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.48 E-value=3e-12 Score=107.38 Aligned_cols=174 Identities=9% Similarity=-0.066 Sum_probs=123.3
Q ss_pred ceEEEEEeCCCCEEEEEecCCeEEEEEccCCc---------ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 038537 91 CVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR---------CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWR 161 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 161 (358)
++..+++++...++++|+.++ +.+|++...+ ..... ...+.. |+.++| +++.|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 589999999999999999985 6669876543 11211 224556 999999 88999998 889999999
Q ss_pred ceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEE
Q 038537 162 RVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIF 241 (358)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 241 (358)
+++..... ....+...+..+.+.+ . .++++..||.|.+||+..... .. +...+.|++++++-++
T Consensus 113 v~sl~~~~----~~~~~~~~v~~i~~~~--p--~~av~~~dG~L~v~dl~~~~~----~~----~~~~Vs~v~WSpkG~~ 176 (388)
T 1xip_A 113 LEELSEFR----TVTSFEKPVFQLKNVN--N--TLVILNSVNDLSALDLRTKST----KQ----LAQNVTSFDVTNSQLA 176 (388)
T ss_dssp SSSTTCEE----EEEECSSCEEEEEECS--S--EEEEEETTSEEEEEETTTCCE----EE----EEESEEEEEECSSEEE
T ss_pred chhhhccC----ccceeecceeeEEecC--C--CEEEEECCCCEEEEEccCCcc----cc----ccCCceEEEEcCCceE
Confidence 87654322 2234556677776654 2 388899999999999986332 11 2234555555444488
Q ss_pred EeeCCCeEEEEEcCCCceeeeeeeee------c---CcccceEEEEeecccceeeeCeEEEE
Q 038537 242 SGSEDTTIRVWRRAEGGCYHECLAVL------D---GHRGPVRCLAASLEMEKVVMGFLVYS 294 (358)
Q Consensus 242 ~~~~dg~i~iwd~~~~~~~~~~~~~~------~---~h~~~v~~i~~~~~~~~~~~~~~l~s 294 (358)
.|..||.+++|+....+.. ...++ . +|...|.+|.|.++ +.+|++
T Consensus 177 vg~~dg~i~~~~~~~~~~~--~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~------~~flv~ 230 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEME--KQFEFSLPSELEELPVEEYSPLSVTILSP------QDFLAV 230 (388)
T ss_dssp EEETTSCEEEEEEETTEEE--EEEEECCCHHHHTSCTTTSEEEEEEESSS------SEEEEE
T ss_pred EEEcCCcEEEEcCCCcccc--ccceecCCcccccccCCCeeEEEEEEecC------CeEEEE
Confidence 8999999999998876420 02233 2 47889999999998 677776
No 205
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.48 E-value=2.7e-11 Score=112.34 Aligned_cols=239 Identities=13% Similarity=0.049 Sum_probs=145.7
Q ss_pred ceEEE--EecCCEEEEEeCC-----ceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCE
Q 038537 31 EVRAI--LAHDNMLFTTNKD-----CKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGL 103 (358)
Q Consensus 31 ~v~~i--~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 103 (358)
.+..+ ++++++|+.++.+ ..|++||+.+++.... ..+...+..++|+|+ +.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~---------------------~~~~~~~~~~~wspD-~~ 221 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD---------------------ELKWVKFSGLAWLGN-DA 221 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE---------------------EEEEEESCCCEESTT-SE
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc---------------------cCCCceeccEEEECC-CE
Confidence 45544 4478888776543 4699999998875421 001112357899999 88
Q ss_pred EEEEecCCe--------------EEEEEccCCcccccccc--cccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEc
Q 038537 104 LYTGSFDKT--------------VKAWRVLDKRCTCVDSF--VAHESNVNAIVVNQDDGFVFTCSSDG-----SVKIWRR 162 (358)
Q Consensus 104 l~~~~~dg~--------------i~iwd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~ 162 (358)
|+.++.++. |++|++.++.......+ ..+...+..+.|+|||++|+..+.++ .|++||+
T Consensus 222 l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~ 301 (741)
T 1yr2_A 222 LLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARV 301 (741)
T ss_dssp EEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEE
T ss_pred EEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEEC
Confidence 888876654 88999877652222222 22334588999999999988877554 8999998
Q ss_pred eecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec----CCcEEEEEccCCcCCccccceeecccceeEEEeee-C
Q 038537 163 VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS----DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI-E 237 (358)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 237 (358)
.++... .. ..+..+....... +.| +++.|+..+. ++.|.+||+.... .........+...+..+++. +
T Consensus 302 ~~~~~~-~~-~~l~~~~~~~~~~-~~~--dg~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~~~~ 374 (741)
T 1yr2_A 302 TNGKIG-PV-TALIPDLKAQWDF-VDG--VGDQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGIAGN 374 (741)
T ss_dssp ETTEEC-CC-EEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEEEBT
T ss_pred CCCCCc-cc-EEecCCCCceEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEEECC
Confidence 754211 01 1122223333333 335 7777777765 3459999987632 11112223333344455554 4
Q ss_pred CEEEEeeCCCeEEEEEcC-CCceeeeeeeeecC-cccceEEEEeecccceeeeCeEEE----EccCCCcEEEEEeee
Q 038537 238 KLIFSGSEDTTIRVWRRA-EGGCYHECLAVLDG-HRGPVRCLAASLEMEKVVMGFLVY----SSSLDQTFKVWRVKV 308 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~~~~~l~----s~~~dg~v~iw~~~~ 308 (358)
.++++...|+..+||.+. .+ .....+.. +.+.+..+.++|+ +..|+ +....+.|.+||+..
T Consensus 375 ~lv~~~~~dg~~~l~~~~~~g----~~~~~l~~~~~~~v~~~~~s~d------~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 375 RLFASYIHDAKSQVLAFDLDG----KPAGAVSLPGIGSASGLSGRPG------DRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EEEEEEEETTEEEEEEEETTS----CEEEECBCSSSCEEEEEECCBT------CSCEEEEEEETTEEEEEEEEETTT
T ss_pred EEEEEEEECCEEEEEEEeCCC----CceeeccCCCCeEEEEeecCCC------CCEEEEEEcCCCCCCEEEEEECCC
Confidence 567778888887777554 23 22333433 3667899999998 44444 344567899999754
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.48 E-value=1.1e-10 Score=100.03 Aligned_cols=232 Identities=12% Similarity=0.111 Sum_probs=148.7
Q ss_pred eEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec
Q 038537 32 VRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF 109 (358)
Q Consensus 32 v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 109 (358)
...+++ +++++++...++.|++||..++...... .. ..... ++|+++++.|+++..
T Consensus 133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~--------------------~~-~~~~~-ia~~~~g~~l~~~d~ 190 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH--------------------PG-FKGGK-PAVTKDKQRVYSIGW 190 (409)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE--------------------ET-CCBCB-CEECTTSSEEEEEBS
T ss_pred ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee--------------------cc-CCCCc-eeEecCCCcEEEEec
Confidence 445665 3556666666789999998866543211 11 12233 899999999988887
Q ss_pred CC--eEEEEEccCCcccccccc----cccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeee--ecccCCc
Q 038537 110 DK--TVKAWRVLDKRCTCVDSF----VAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMT--LKFQQSS 181 (358)
Q Consensus 110 dg--~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~~~~~ 181 (358)
++ .|.+++...+. ....+ ......+.+++++|++..|+++..++.|+.||...+.. ..... .......
T Consensus 191 ~~~~~I~~~d~~~~~--~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~--~~~~~~~~~g~~~~ 266 (409)
T 3hrp_A 191 EGTHTVYVYMKASGW--APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV--TLIKQLELSGSLGT 266 (409)
T ss_dssp STTCEEEEEEGGGTT--CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE--EEEEECCCCSCCCC
T ss_pred CCCceEEEEEcCCCc--eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE--EEEecccccCCCCC
Confidence 66 78888876554 11222 11345678899999555566677788999999864431 11100 1111112
Q ss_pred e-e-EEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecc-----------------cceeEEEeeeCCEEEE
Q 038537 182 V-N-ALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGH-----------------CFAVLCLVAIEKLIFS 242 (358)
Q Consensus 182 i-~-~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~ 242 (358)
- . .++++| .++.++++-..++.|+.|+..... . .+.++ ...-.+++++++++++
T Consensus 267 ~P~~~ia~~p-~~g~lyv~d~~~~~I~~~~~~g~~---~---~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva 339 (409)
T 3hrp_A 267 NPGPYLIYYF-VDSNFYMSDQNLSSVYKITPDGEC---E---WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV 339 (409)
T ss_dssp SSCCEEEEET-TTTEEEEEETTTTEEEEECTTCCE---E---EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred CccccEEEeC-CCCEEEEEeCCCCEEEEEecCCCE---E---EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence 1 3 899997 135566666678889999876420 0 01111 1223567778887778
Q ss_pred ee-CCCeEEEEEcCCCceeeeeeeeecCc---------------ccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 243 GS-EDTTIRVWRRAEGGCYHECLAVLDGH---------------RGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 243 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~h---------------~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
-. .++.|+.|++.++. +..+.++ -....+|+++++ +.++++-..++.|+.+++
T Consensus 340 d~~~~~~I~~~~~~~G~-----v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~------g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 340 DGFKGYCLRKLDILDGY-----VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE------GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ETTTTCEEEEEETTTTE-----EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS------SEEEEEESTTCEEEEEEE
T ss_pred eCCCCCEEEEEECCCCE-----EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC------CCEEEEECCCCeEEEEEe
Confidence 77 88999999987763 2222222 245789999999 789999888999998876
Q ss_pred e
Q 038537 307 K 307 (358)
Q Consensus 307 ~ 307 (358)
+
T Consensus 409 e 409 (409)
T 3hrp_A 409 E 409 (409)
T ss_dssp C
T ss_pred C
Confidence 3
No 207
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.47 E-value=4.2e-11 Score=101.82 Aligned_cols=263 Identities=8% Similarity=0.001 Sum_probs=160.8
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecc---------cce-EEEEecCCEEEEEeCCceEEEEecccccccccccccccC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARH---------GEV-RAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLP 71 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~---------~~v-~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 71 (358)
|++++.++.|..+|..+++.+....... ..+ .....+++.++.++.++.|..+|..+++..........
T Consensus 56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~- 134 (376)
T 3q7m_A 56 VYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE- 134 (376)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSC-
T ss_pred EEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc-
Confidence 5677888999999999998876665421 222 34456788899999999999999998887654432110
Q ss_pred CCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCe------EEEEEcCCC
Q 038537 72 RRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNV------NAIVVNQDD 145 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v------~~~~~~~~~ 145 (358)
....+ .. .+..++.++.++.|..+|..+++ .+-..... .++ ...... +
T Consensus 135 ---------------~~~~p----~~--~~~~v~v~~~~g~l~~~d~~tG~--~~W~~~~~-~~~~~~~~~~~~~~~--~ 188 (376)
T 3q7m_A 135 ---------------ALSRP----VV--SDGLVLIHTSNGQLQALNEADGA--VKWTVNLD-MPSLSLRGESAPTTA--F 188 (376)
T ss_dssp ---------------CCSCC----EE--ETTEEEEECTTSEEEEEETTTCC--EEEEEECC-C-----CCCCCCEEE--T
T ss_pred ---------------eEcCC----EE--ECCEEEEEcCCCeEEEEECCCCc--EEEEEeCC-CCceeecCCCCcEEE--C
Confidence 01111 11 24477888889999999998887 33322221 111 111222 4
Q ss_pred CEEEEEeCCCcEEEEEceecCCcceeeeeecccCC---ceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccce
Q 038537 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQS---SVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF 222 (358)
Q Consensus 146 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 222 (358)
..+++++.++.+..+|..+++..+........... .+..+...|...+..++.++.++.+..+|..+++......
T Consensus 189 ~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~-- 266 (376)
T 3q7m_A 189 GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE-- 266 (376)
T ss_dssp TEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC--
T ss_pred CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc--
Confidence 56788888999999999777654443321100000 0000111111135677788889999999998754332211
Q ss_pred eecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecC-cccceEEEEeecccceeeeCeEEEEccCCCcE
Q 038537 223 LQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDG-HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTF 301 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v 301 (358)
.........++..++.++.++.|..+|..+++. +..... ....+...... +..|+.++.+|.|
T Consensus 267 ----~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG~~----~w~~~~~~~~~~~~~~~~--------~~~l~v~~~~g~l 330 (376)
T 3q7m_A 267 ----LGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVT----LWTQSDLLHRLLTSPVLY--------NGNLVVGDSEGYL 330 (376)
T ss_dssp ----CCCEEEEEEETTEEEEEETTCCEEEEETTTCCE----EEEECTTTTSCCCCCEEE--------TTEEEEECTTSEE
T ss_pred ----CCCCCCceEECCEEEEEcCCCeEEEEECCCCcE----EEeecccCCCcccCCEEE--------CCEEEEEeCCCeE
Confidence 112234455688888889999999999999954 333321 11222222222 3477788889999
Q ss_pred EEEEeeeC
Q 038537 302 KVWRVKVM 309 (358)
Q Consensus 302 ~iw~~~~~ 309 (358)
.++|..+.
T Consensus 331 ~~~d~~tG 338 (376)
T 3q7m_A 331 HWINVEDG 338 (376)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 99998753
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=7.9e-10 Score=90.68 Aligned_cols=210 Identities=14% Similarity=0.106 Sum_probs=132.2
Q ss_pred CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEc
Q 038537 39 DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRV 118 (358)
Q Consensus 39 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 118 (358)
+.++++...++.|..||..++.... ......+.+++++++++++++ . ++.|.+||.
T Consensus 25 ~~l~~~d~~~~~i~~~d~~~~~~~~----------------------~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~ 80 (297)
T 3g4e_A 25 NSLLFVDIPAKKVCRWDSFTKQVQR----------------------VTMDAPVSSVALRQSGGYVAT-I-GTKFCALNW 80 (297)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEE----------------------EECSSCEEEEEEBTTSSEEEE-E-TTEEEEEET
T ss_pred CEEEEEECCCCEEEEEECCCCcEEE----------------------EeCCCceEEEEECCCCCEEEE-E-CCeEEEEEC
Confidence 3466666678999999988654311 123456899999999995554 4 567999999
Q ss_pred cCCcccccccccc--cccCeEEEEEcCCCCEEEEEeCC---------CcEEEEEceecCCcceeeeeecccCCceeEEEE
Q 038537 119 LDKRCTCVDSFVA--HESNVNAIVVNQDDGFVFTCSSD---------GSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187 (358)
Q Consensus 119 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~ 187 (358)
.+++...+..... ....+..++++|+|+++++...+ ..-.+|.+........ ..........++|
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~----~~~~~~~pngi~~ 156 (297)
T 3g4e_A 81 KEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK----YFDQVDISNGLDW 156 (297)
T ss_dssp TTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE----EEEEESBEEEEEE
T ss_pred CCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE----EeeccccccceEE
Confidence 8776433322211 12457899999999977655332 3345665543222111 1122345678999
Q ss_pred eecCCCcEE-EEeecCCcEEEEEccCCcCCcc---ccceeecccce--eEEEeeeCCEEEEeeCCCeEEEEEcCCCceee
Q 038537 188 SSFFDNYFL-YSGSSDGSINFWEKDKMSGGFN---HGGFLQGHCFA--VLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYH 261 (358)
Q Consensus 188 ~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 261 (358)
+| +++.| ++.+.++.|.+|++........ ....+...... -.++++++++.++...++.|..||..++
T Consensus 157 sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---- 230 (297)
T 3g4e_A 157 SL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---- 230 (297)
T ss_dssp CT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC----
T ss_pred cC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc----
Confidence 98 88765 4555678999999742111111 01111111122 2456677887777777889999999877
Q ss_pred eeeeeecCcccceEEEEee-cc
Q 038537 262 ECLAVLDGHRGPVRCLAAS-LE 282 (358)
Q Consensus 262 ~~~~~~~~h~~~v~~i~~~-~~ 282 (358)
+.+..+..+...+++++|. |+
T Consensus 231 ~~~~~i~~p~~~~t~~~f~g~d 252 (297)
T 3g4e_A 231 KRLQTVKLPVDKTTSCCFGGKN 252 (297)
T ss_dssp CEEEEEECSSSBEEEEEEESGG
T ss_pred eEEEEEECCCCCceEEEEeCCC
Confidence 4566666666789999998 77
No 209
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.43 E-value=6.2e-11 Score=100.81 Aligned_cols=261 Identities=11% Similarity=0.038 Sum_probs=157.5
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSK 81 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
|++++.++.|..+|..+++.+................++.++.++.++.|..+|..+++............
T Consensus 106 v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~--------- 176 (376)
T 3q7m_A 106 VYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL--------- 176 (376)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC------------
T ss_pred EEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce---------
Confidence 56788899999999999998776665433322333457788889999999999999888766543211100
Q ss_pred CCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccc--c-----CeEEEEEcC--CCCEEEEEe
Q 038537 82 SNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHE--S-----NVNAIVVNQ--DDGFVFTCS 152 (358)
Q Consensus 82 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~-----~v~~~~~~~--~~~~l~~~~ 152 (358)
....... .... +..++.++.++.+..+|..+++ .+-...... . .+..+...| .+..++.++
T Consensus 177 --~~~~~~~----~~~~--~~~v~~g~~~g~l~~~d~~tG~--~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~ 246 (376)
T 3q7m_A 177 --SLRGESA----PTTA--FGAAVVGGDNGRVSAVLMEQGQ--MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA 246 (376)
T ss_dssp ----CCCCC----CEEE--TTEEEECCTTTEEEEEETTTCC--EEEEEECCC-----------CCCCCCEEETTEEEEEC
T ss_pred --eecCCCC----cEEE--CCEEEEEcCCCEEEEEECCCCc--EEEEEecccCCCCcccccccccCCCcEEECCEEEEEe
Confidence 0001111 1111 3567888889999999998887 322222110 0 000011111 356778888
Q ss_pred CCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEE
Q 038537 153 SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLC 232 (358)
Q Consensus 153 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 232 (358)
.++.+..+|..+++...... ......+.. ++..++.++.++.+..+|..+++....... ........
T Consensus 247 ~~g~l~~~d~~tG~~~w~~~------~~~~~~~~~----~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~---~~~~~~~~ 313 (376)
T 3q7m_A 247 YNGNLTALDLRSGQIMWKRE------LGSVNDFIV----DGNRIYLVDQNDRVMALTIDGGVTLWTQSD---LLHRLLTS 313 (376)
T ss_dssp TTSCEEEEETTTCCEEEEEC------CCCEEEEEE----ETTEEEEEETTCCEEEEETTTCCEEEEECT---TTTSCCCC
T ss_pred cCcEEEEEECCCCcEEeecc------CCCCCCceE----ECCEEEEEcCCCeEEEEECCCCcEEEeecc---cCCCcccC
Confidence 89999999997766443322 122333333 466788888899999999987543322210 01111112
Q ss_pred EeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 233 LVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 233 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
....+..|+.++.+|.|+++|..+++. +.........+....... +..|+.++.||.|..|+
T Consensus 314 ~~~~~~~l~v~~~~g~l~~~d~~tG~~----~~~~~~~~~~~~~~~~~~-------~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 314 PVLYNGNLVVGDSEGYLHWINVEDGRF----VAQQKVDSSGFQTEPVAA-------DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCE----EEEEECCTTCBCSCCEEE-------TTEEEEEBTTSCEEEEE
T ss_pred CEEECCEEEEEeCCCeEEEEECCCCcE----EEEEecCCCcceeCCEEE-------CCEEEEEeCCCEEEEEe
Confidence 223568889999999999999999853 333333222222211111 34677788899999986
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.41 E-value=7e-10 Score=90.94 Aligned_cols=236 Identities=12% Similarity=0.034 Sum_probs=152.9
Q ss_pred ccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEE
Q 038537 29 HGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYT 106 (358)
Q Consensus 29 ~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 106 (358)
...+.++.. +++.+++...++.|.+||.. ++... .. +..+...+.++++.+++.+.++
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~------------------~~~~~~~~~~i~~~~~g~l~v~ 78 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FE------------------VPTPDAKVMCLIVSSLGDIWFT 78 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EE------------------CSSTTCCEEEEEECTTSCEEEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EE------------------CCCCCCcceeEEECCCCCEEEE
Confidence 345667766 45566666678999999977 43221 11 0123356889999999987777
Q ss_pred EecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEE
Q 038537 107 GSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALA 186 (358)
Q Consensus 107 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~ 186 (358)
...++.|..+|.. ++.. ..........+.++++.++++++++...++.|..+|.. +.. . ..........+..++
T Consensus 79 ~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~--~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 79 ENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-Y--EYDLPNKGSYPAFIT 152 (300)
T ss_dssp ETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-E--EEECSSTTCCEEEEE
T ss_pred ecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-E--EccCCCCCCCceeEE
Confidence 6667899999987 5421 11222234678999999999988877768889999874 221 1 111222345678888
Q ss_pred EeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccccee--EEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeee
Q 038537 187 LSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAV--LCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECL 264 (358)
Q Consensus 187 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 264 (358)
+.+ +++++++...++.|..||... . ... .........+ .++.+++++.++....+.|.+||. +++. ..
T Consensus 153 ~d~--~g~l~v~~~~~~~i~~~~~~g-~--~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~---~~ 222 (300)
T 2qc5_A 153 LGS--DNALWFTENQNNSIGRITNTG-K--LEE-YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI---SE 222 (300)
T ss_dssp ECT--TSSEEEEETTTTEEEEECTTC-C--EEE-EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE---EE
T ss_pred ECC--CCCEEEEecCCCeEEEECCCC-c--EEE-eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE---EE
Confidence 887 788777666678899998732 1 111 0111112223 445566777776667788999998 4421 11
Q ss_pred eeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 265 AVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 265 ~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
..+..+...+.++++.++ +.+.++...++.|..|+.
T Consensus 223 ~~~~~~~~~~~~i~~d~~------g~l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 223 YDIPTPNARPHAITAGKN------SEIWFTEWGANQIGRITN 258 (300)
T ss_dssp EECSSTTCCEEEEEECST------TCEEEEETTTTEEEEECT
T ss_pred EECCCCCCCceEEEECCC------CCEEEeccCCCeEEEECC
Confidence 223344567899999998 777777777789999986
No 211
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.41 E-value=3e-10 Score=93.93 Aligned_cols=226 Identities=11% Similarity=0.029 Sum_probs=138.8
Q ss_pred eeCCCcEEEEeCCCceeeeeee----ecccceEEEEecC--CEEEEEeCCceEEEEeccccccccc-ccccccCCCceee
Q 038537 5 GSSSTRIRVWRQPDCVERGFIK----ARHGEVRAILAHD--NMLFTTNKDCKIRIWNFTVSDNFRT-KKVTTLPRRSSFL 77 (358)
Q Consensus 5 g~~dg~v~vw~~~~~~~~~~~~----~h~~~v~~i~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~-~~~~~~~~~~~~~ 77 (358)
+..++.|.+||..+++...... ++...+.++.++. +.++.++..+.|.+||.. ++.... ... .
T Consensus 42 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~--~------- 111 (314)
T 1pjx_A 42 GKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKD--S------- 111 (314)
T ss_dssp TEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBC--T-------
T ss_pred CCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEecc--C-------
Confidence 4678899999987776543322 1445677887743 455555555578899987 443211 100 0
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEecC---------------CeEEEEEccCCcccccccccccccCeEEEEEc
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD---------------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVN 142 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~ 142 (358)
.......+.+++++++++++++...+ +.|..++.. ++ ...+..+......++++
T Consensus 112 -------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~---~~~~~~~~~~~~~i~~~ 180 (314)
T 1pjx_A 112 -------EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ---MIQVDTAFQFPNGIAVR 180 (314)
T ss_dssp -------TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC---EEEEEEEESSEEEEEEE
T ss_pred -------CCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CC---EEEeccCCCCcceEEEe
Confidence 01123457899999999877776554 567777765 43 22222334457889999
Q ss_pred ----CCCCEEEEE-eCCCcEEEEEceecCCcc--eeeeeecccC-CceeEEEEeecCCCcEEEEeecCCcEEEEEccCCc
Q 038537 143 ----QDDGFVFTC-SSDGSVKIWRRVYRENSH--TLTMTLKFQQ-SSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMS 214 (358)
Q Consensus 143 ----~~~~~l~~~-~~dg~i~~wd~~~~~~~~--~~~~~~~~~~-~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 214 (358)
|+++.++++ ..++.|.+||+....... .....+..+. ..+..+++++ ++.++++...++.|.+||..+..
T Consensus 181 ~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~--~G~l~v~~~~~~~i~~~d~~~g~ 258 (314)
T 1pjx_A 181 HMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE--DNNLLVANWGSSHIEVFGPDGGQ 258 (314)
T ss_dssp ECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT--TCCEEEEEETTTEEEEECTTCBS
T ss_pred cccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECC--CCCEEEEEcCCCEEEEEcCCCCc
Confidence 999766555 567899999986321111 1111222222 5577888887 88888887788999999987432
Q ss_pred CCccccceeeccccee--EEEeeeCCEE-EEeeCCCeEEEEEcCCC
Q 038537 215 GGFNHGGFLQGHCFAV--LCLVAIEKLI-FSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 215 ~~~~~~~~~~~~~~~~--~~~~~~~~~l-~~~~~dg~i~iwd~~~~ 257 (358)
. ......+...+ .+++++++.| ++...++.|..|++...
T Consensus 259 ~----~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 259 P----KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp C----SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred E----eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 2 11222222333 4455778845 45556688999998754
No 212
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.40 E-value=4e-11 Score=109.53 Aligned_cols=277 Identities=10% Similarity=0.047 Sum_probs=167.3
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccc----------e-EEEEecCCEEEEEeCCceEEEEeccccccccccccc-c
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGE----------V-RAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVT-T 69 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~----------v-~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~ 69 (358)
|++++.++.|..+|..+++.+..+..+... + ..+...++.+++++.|+.|..+|..+++.+...... .
T Consensus 73 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~ 152 (689)
T 1yiq_A 73 MYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRAD 152 (689)
T ss_dssp EEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSC
T ss_pred EEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCC
Confidence 567778899999999999988777543221 1 123456788999999999999999999887765432 1
Q ss_pred cCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe------cCCeEEEEEccCCcccccccccc------------
Q 038537 70 LPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS------FDKTVKAWRVLDKRCTCVDSFVA------------ 131 (358)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~------------ 131 (358)
... .......++ + .++ .++.++ .+|.|..||..+++. +-.+..
T Consensus 153 ~~~-----------~~~~~~sP~----v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~--~W~~~~~~~~p~~~~~~~ 213 (689)
T 1yiq_A 153 HKR-----------SYTITGAPR----V-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKE--AWRFYTVPGDPKLPPEGK 213 (689)
T ss_dssp TTS-----------CCBCCSCCE----E-ETT-EEEECCBCTTTCCBCEEEEEETTTCCE--EEEEESSCCCTTSCCCSH
T ss_pred CCC-----------CccccCCcE----E-ECC-EEEEEeCCCccCCCCEEEEEECCCCcE--EEEecccCCCcccccccc
Confidence 000 000011111 1 144 344443 378999999998872 222210
Q ss_pred -------------------cccCeEEEEEcCCCCEEEEEeCCCc-------------------EEEEEceecCCcceeee
Q 038537 132 -------------------HESNVNAIVVNQDDGFVFTCSSDGS-------------------VKIWRRVYRENSHTLTM 173 (358)
Q Consensus 132 -------------------~~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~~wd~~~~~~~~~~~~ 173 (358)
+......++++|+...++.++.++. |..+|..+++..+....
T Consensus 214 ~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~ 293 (689)
T 1yiq_A 214 GMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQT 293 (689)
T ss_dssp HHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEES
T ss_pred cccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeec
Confidence 0111125788998899999988764 99999988876655432
Q ss_pred eecc-----cCCceeEEEEeecCCCc---EEEEeecCCcEEEEEccCCcCCcccc-------cee---------------
Q 038537 174 TLKF-----QQSSVNALALSSFFDNY---FLYSGSSDGSINFWEKDKMSGGFNHG-------GFL--------------- 223 (358)
Q Consensus 174 ~~~~-----~~~~i~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~-------~~~--------------- 223 (358)
.... ....+....... ++. .++.++.+|.++++|.++++...... ...
T Consensus 294 ~~~d~wd~~~~~~~~l~d~~~--~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~ 371 (689)
T 1yiq_A 294 TPGDAWDYTATQHMILAELPI--DGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAA 371 (689)
T ss_dssp STTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHC
T ss_pred CCcccccccCCCCcEEEeecc--CCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhcc
Confidence 2100 011111222222 454 78899999999999998865321100 000
Q ss_pred ---------------ecccceeEEEeeeCCEEEEeeC-------------------------------------------
Q 038537 224 ---------------QGHCFAVLCLVAIEKLIFSGSE------------------------------------------- 245 (358)
Q Consensus 224 ---------------~~~~~~~~~~~~~~~~l~~~~~------------------------------------------- 245 (358)
-++.-.-.+++|+..++++...
T Consensus 372 ~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~ 451 (689)
T 1yiq_A 372 YWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAK 451 (689)
T ss_dssp TTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHT
T ss_pred ccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCC
Confidence 0000111355565566665421
Q ss_pred --CCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 246 --DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 246 --dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
+|.|+.||+.+++.. .....+ .++..-.+... +.+++.++.||.|+.||.++.+
T Consensus 452 ~~~g~l~A~D~~tG~~~----W~~~~~-~~~~~g~~~ta------gglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 452 SWSGKLIAWDPVKQQAA----WEVPYV-TIFNGGTLSTA------GNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp TCEEEEEEEETTTTEEE----EEEEES-SSCCCCEEEET------TTEEEEECTTSEEEEEETTTCC
T ss_pred CcceeEEEEECCCCCeE----eEccCC-CCccCccceEC------CCEEEEECCCCcEEEEECCCCc
Confidence 478999999999543 333323 22333345555 6688899999999999988643
No 213
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.40 E-value=9e-11 Score=107.04 Aligned_cols=292 Identities=10% Similarity=0.047 Sum_probs=171.7
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeec-c----cceE-EEEecCCEEEEEeC------CceEEEEecccccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKAR-H----GEVR-AILAHDNMLFTTNK------DCKIRIWNFTVSDNFRTKKVTT 69 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h-~----~~v~-~i~~~~~~l~s~~~------dg~i~iw~~~~~~~~~~~~~~~ 69 (358)
|++++.|+.|..+|..+++.+..+..+ . ..+. .-...++.++.++. +|.|+.+|..+++.+.......
T Consensus 131 v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~ 210 (677)
T 1kb0_A 131 VYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVP 210 (677)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred EEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCC
Confidence 677888999999999999998887755 2 1121 11234566666653 7999999999998877654322
Q ss_pred cCCCceee---------eecC-CCcc--ccCCCceEEEEEeCCCCEEEEEecCC-------------------eEEEEEc
Q 038537 70 LPRRSSFL---------SFSK-SNTQ--QQHRDCVSCMAFYHAEGLLYTGSFDK-------------------TVKAWRV 118 (358)
Q Consensus 70 ~~~~~~~~---------~~~~-~~~~--~~h~~~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~ 118 (358)
........ .+.. ...+ .+.......++++|++..++.++.++ .|..+|.
T Consensus 211 ~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~ 290 (677)
T 1kb0_A 211 GDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDP 290 (677)
T ss_dssp CCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECT
T ss_pred CCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEEC
Confidence 11000000 0000 0000 02222234678899888888887664 5999999
Q ss_pred cCCcccccccccccc-------cCeEEEEEcCCC---CEEEEEeCCCcEEEEEceecCCcceeeeeec-------ccCCc
Q 038537 119 LDKRCTCVDSFVAHE-------SNVNAIVVNQDD---GFVFTCSSDGSVKIWRRVYRENSHTLTMTLK-------FQQSS 181 (358)
Q Consensus 119 ~~~~~~~~~~~~~~~-------~~v~~~~~~~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-------~~~~~ 181 (358)
.+++..-......|. .....+....+| ..++.++.+|.++++|..+++.......... .....
T Consensus 291 ~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~ 370 (677)
T 1kb0_A 291 DTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKP 370 (677)
T ss_dssp TTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCE
T ss_pred CCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCce
Confidence 988732222222221 122223333467 6889999999999999988765443321100 00000
Q ss_pred ------------------------eeEEEEeecCCCcEEEEeecC-----------------------------------
Q 038537 182 ------------------------VNALALSSFFDNYFLYSGSSD----------------------------------- 202 (358)
Q Consensus 182 ------------------------i~~~~~~~~~~~~~l~~~~~d----------------------------------- 202 (358)
-..++++| +..++++...+
T Consensus 371 ~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp--~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 448 (677)
T 1kb0_A 371 IGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP--QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNA 448 (677)
T ss_dssp EECGGGGCTTSCEECSSCTTCSSCSSCCEEET--TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECS
T ss_pred eeccccCcCCCccEECcCcccccCCCCceEcC--CCCEEEEeChhcceeeeccccccccccccccccccccccccccccc
Confidence 02467776 77777765432
Q ss_pred --------CcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecC-cccc
Q 038537 203 --------GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDG-HRGP 273 (358)
Q Consensus 203 --------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-h~~~ 273 (358)
|.|..||+.+++....... +....-..+...+.+++.++.||.+++||..+++. +..+.. +...
T Consensus 449 ~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~----lw~~~~~~~~~ 521 (677)
T 1kb0_A 449 EPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK----LWEAPTGTGVV 521 (677)
T ss_dssp SCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE----EEEEECSSCCC
T ss_pred ccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce----eeeeeCCCCcc
Confidence 6789999887554333211 11111123456778889999999999999999954 444432 2222
Q ss_pred eEEEEeecccceeeeCe-EEEEccC----------------CCcEEEEEeee
Q 038537 274 VRCLAASLEMEKVVMGF-LVYSSSL----------------DQTFKVWRVKV 308 (358)
Q Consensus 274 v~~i~~~~~~~~~~~~~-~l~s~~~----------------dg~v~iw~~~~ 308 (358)
-.-+.+..+ |+ ++++.+. .+.+..|.+..
T Consensus 522 ~~p~~y~~~------G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 522 AAPSTYMVD------GRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp SCCEEEEET------TEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred cCCEEEEeC------CEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 334566666 54 4444222 46788888873
No 214
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.38 E-value=5.1e-11 Score=108.64 Aligned_cols=276 Identities=7% Similarity=0.040 Sum_probs=170.1
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeeccc-----------ceEEEEecCCEEEEEeCCceEEEEeccccccccccccc-c
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHG-----------EVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVT-T 69 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~-----------~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~ 69 (358)
|++++.++.|.-+|..+++.+..+..... ....+...++.++.++.|+.|..+|..+++.+...... .
T Consensus 80 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~ 159 (677)
T 1kb0_A 80 MYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEG 159 (677)
T ss_dssp EEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTT
T ss_pred EEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcC
Confidence 56777789999999999998877764421 11234557889999999999999999999887765432 1
Q ss_pred cCCCceeeeecCCCccccCCCceEE-EEEeCCCCEEEEEec------CCeEEEEEccCCcccccccccc-----------
Q 038537 70 LPRRSSFLSFSKSNTQQQHRDCVSC-MAFYHAEGLLYTGSF------DKTVKAWRVLDKRCTCVDSFVA----------- 131 (358)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~----------- 131 (358)
.. ....+.. ... .+..++.++. ++.|+.+|..+++. +-.+..
T Consensus 160 ~~----------------~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~--~W~~~~~~~~~~~~~~~ 219 (677)
T 1kb0_A 160 QK----------------GSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGER--KWRWFSVPGDPSKPFED 219 (677)
T ss_dssp CC----------------SSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCE--EEEEESSCCCTTSCCSS
T ss_pred cC----------------cCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcE--EEEeccCCCCccccccc
Confidence 00 0001111 011 1334555543 78999999988872 222211
Q ss_pred ---------------------cccCeEEEEEcCCCCEEEEEeCCC-------------------cEEEEEceecCCccee
Q 038537 132 ---------------------HESNVNAIVVNQDDGFVFTCSSDG-------------------SVKIWRRVYRENSHTL 171 (358)
Q Consensus 132 ---------------------~~~~v~~~~~~~~~~~l~~~~~dg-------------------~i~~wd~~~~~~~~~~ 171 (358)
.......++++|++..++.++.++ .|..+|..+++..+..
T Consensus 220 ~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~ 299 (677)
T 1kb0_A 220 ESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHY 299 (677)
T ss_dssp HHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEE
T ss_pred cccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEE
Confidence 011123578899999998887764 4899999887765554
Q ss_pred eeeecc-----cCCceeEEEEeecCCC---cEEEEeecCCcEEEEEccCCcCCccccce-------e-------------
Q 038537 172 TMTLKF-----QQSSVNALALSSFFDN---YFLYSGSSDGSINFWEKDKMSGGFNHGGF-------L------------- 223 (358)
Q Consensus 172 ~~~~~~-----~~~~i~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~------------- 223 (358)
...... .......+.... ++ ..++.++.+|.++++|..+++........ +
T Consensus 300 ~~~~~d~wd~~~~~~p~l~~~~~--dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~ 377 (677)
T 1kb0_A 300 QETPGDNWDYTSTQPMILADIKI--AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAAR 377 (677)
T ss_dssp ESSTTCCSCCCCCSCCEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGG
T ss_pred ecCCCcccccccCCCcEEEeccc--CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccC
Confidence 321110 011222223333 56 68999999999999999886532211100 0
Q ss_pred -------------ecccceeEEEeeeCCEEEEeeC-------------------------------------------CC
Q 038537 224 -------------QGHCFAVLCLVAIEKLIFSGSE-------------------------------------------DT 247 (358)
Q Consensus 224 -------------~~~~~~~~~~~~~~~~l~~~~~-------------------------------------------dg 247 (358)
-++.-...+++|+..++++... .|
T Consensus 378 ~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g 457 (677)
T 1kb0_A 378 DGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFG 457 (677)
T ss_dssp CTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEE
T ss_pred cCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCcc
Confidence 0000012456666677766432 27
Q ss_pred eEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 248 TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 248 ~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
.|..||+.+++..+ ... +..++.+..+... +.+++.++.||.+++||.++.+
T Consensus 458 ~l~A~D~~tG~~~W----~~~-~~~~~~~g~~~~~------g~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 458 RLLAWDPVAQKAAW----SVE-HVSPWNGGTLTTA------GNVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp EEEEEETTTTEEEE----EEE-ESSSCCCCEEEET------TTEEEEECTTSEEEEEETTTCC
T ss_pred EEEEEeCCCCcEEe----ecC-CCCCCcCcceEeC------CCEEEEECCCCcEEEEECCCCc
Confidence 89999999995433 332 2234444456666 6688888999999999998543
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.33 E-value=2.8e-10 Score=104.61 Aligned_cols=238 Identities=12% Similarity=0.077 Sum_probs=139.5
Q ss_pred ceEEE--EecCCEEEE-----EeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCE
Q 038537 31 EVRAI--LAHDNMLFT-----TNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGL 103 (358)
Q Consensus 31 ~v~~i--~~~~~~l~s-----~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 103 (358)
.+..+ ++++++|+- |+....|++||+.+++.+... -+......++|+ |++.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~---------------------~~~~k~~~~~Ws-Dg~~ 187 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP---------------------LKDVKFSGISWL-GNEG 187 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE---------------------EEEEESCCCEEE-TTTE
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc---------------------cCCceeccEEEe-CCCE
Confidence 44444 447787773 333467999999988754210 000112567899 9999
Q ss_pred EEEEecCC-------------eEEEEEccCCcccc--cccccc-cccCeEEEEEcCCCCEEEEEeC----CCcEEEEEce
Q 038537 104 LYTGSFDK-------------TVKAWRVLDKRCTC--VDSFVA-HESNVNAIVVNQDDGFVFTCSS----DGSVKIWRRV 163 (358)
Q Consensus 104 l~~~~~dg-------------~i~iwd~~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~~wd~~ 163 (358)
|+.++.+. .|++|++.+..... +..... |......+.|+||+++|+.... +..|+++|+.
T Consensus 188 l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~ 267 (693)
T 3iuj_A 188 FFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLS 267 (693)
T ss_dssp EEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETT
T ss_pred EEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECC
Confidence 98888774 49999988765322 222233 4456788999999998865543 2489999986
Q ss_pred ecCCcceeeeeecccCCceeEEEEeecCCCcEE-EEeecC---CcEEEEEccCCcCCccccceeecccceeEEEeeeCCE
Q 038537 164 YRENSHTLTMTLKFQQSSVNALALSSFFDNYFL-YSGSSD---GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKL 239 (358)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (358)
++..... .+..+....... +++ ++..| +....+ +.|..+|+.+... .....+..+...+..++++++.
T Consensus 268 ~~~~~~~---~l~~~~~~~~~~-~~~--~g~~l~~~t~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~~~s~~g~~ 339 (693)
T 3iuj_A 268 QENAPLL---TVQGDLDADVSL-VDN--KGSTLYLLTNRDAPNRRLVTVDAANPGP--AHWRDLIPERQQVLTVHSGSGY 339 (693)
T ss_dssp STTCCCE---EEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSSCEEEEEETTE
T ss_pred CCCCceE---EEeCCCCceEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCc--cccEEEecCCCCEEEEEEECCE
Confidence 5532221 122233333333 454 44444 444433 5788999886432 1111233333333388899888
Q ss_pred EEEeeC-CC--eEEEEEcCCCceeeeeeeee-cCcccceEEEEeecccceeeeCeEEEEccC---CCcEEEEEeee
Q 038537 240 IFSGSE-DT--TIRVWRRAEGGCYHECLAVL-DGHRGPVRCLAASLEMEKVVMGFLVYSSSL---DQTFKVWRVKV 308 (358)
Q Consensus 240 l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~---dg~v~iw~~~~ 308 (358)
|+.... ++ .|++||+..+. ...+ ....+.+..+.++++.. .++++.+. -+.|..||+..
T Consensus 340 lv~~~~~~g~~~l~~~d~~g~~-----~~~l~~p~~~~~~~~~~~~d~~-----~l~~~~ss~~tP~~l~~~d~~~ 405 (693)
T 3iuj_A 340 LFAEYMVDATARVEQFDYEGKR-----VREVALPGLGSVSGFNGKHDDP-----ALYFGFENYAQPPTLYRFEPKS 405 (693)
T ss_dssp EEEEEEETTEEEEEEECTTSCE-----EEEECCSSSSEEEECCCCTTCS-----CEEEEEECSSSCCEEEEECTTT
T ss_pred EEEEEEECCeeEEEEEECCCCe-----eEEeecCCCceEEeeecCCCCC-----EEEEEecCCCCCCEEEEEECCC
Confidence 776654 44 68899988652 2222 23445677888887732 23333322 26788888753
No 216
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.30 E-value=6.6e-10 Score=101.56 Aligned_cols=269 Identities=14% Similarity=0.136 Sum_probs=155.3
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeec--cc---ceE-EEEecCCEEEEEe------CCceEEEEecccccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKAR--HG---EVR-AILAHDNMLFTTN------KDCKIRIWNFTVSDNFRTKKVTT 69 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h--~~---~v~-~i~~~~~~l~s~~------~dg~i~iw~~~~~~~~~~~~~~~ 69 (358)
|++++.||.|..+|..+++.+..+... .. .+. +-...++.++.++ .+|.|..||..+++.+.......
T Consensus 124 v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~ 203 (689)
T 1yiq_A 124 VYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVP 203 (689)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred EEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccC
Confidence 678889999999999999988776542 11 111 1112344555554 37899999999999877654211
Q ss_pred -cCCCc---eeeeecCCCcc--------ccCCCceEEEEEeCCCCEEEEEecCCe-------------------EEEEEc
Q 038537 70 -LPRRS---SFLSFSKSNTQ--------QQHRDCVSCMAFYHAEGLLYTGSFDKT-------------------VKAWRV 118 (358)
Q Consensus 70 -~~~~~---~~~~~~~~~~~--------~~h~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~ 118 (358)
.+... ..+.. ...+. .++......+++.|+..+++.++.++. |..+|.
T Consensus 204 ~~p~~~~~~~~~~~-~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~ 282 (689)
T 1yiq_A 204 GDPKLPPEGKGMEI-AAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNA 282 (689)
T ss_dssp CCTTSCCCSHHHHH-HHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEET
T ss_pred CCcccccccccccc-cccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEc
Confidence 00000 00000 00000 012222236788898889998887764 999999
Q ss_pred cCCcccccccccc--cc-------cCeEEEEEcCCCC---EEEEEeCCCcEEEEEceecCCcceeeeee-----------
Q 038537 119 LDKRCTCVDSFVA--HE-------SNVNAIVVNQDDG---FVFTCSSDGSVKIWRRVYRENSHTLTMTL----------- 175 (358)
Q Consensus 119 ~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~~~~----------- 175 (358)
++++ .+-.++. |. .++.......++. .++.++.+|.++++|.++++.........
T Consensus 283 ~TG~--~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 283 DTGE--YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp TTCC--EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred cCCc--eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 9988 3333321 21 2222223223554 78899999999999998776542211100
Q ss_pred -------------cccC-----------CceeEEEEeecCCCcEEEEeec------------------------------
Q 038537 176 -------------KFQQ-----------SSVNALALSSFFDNYFLYSGSS------------------------------ 201 (358)
Q Consensus 176 -------------~~~~-----------~~i~~~~~~~~~~~~~l~~~~~------------------------------ 201 (358)
.... ..-..++++| +..++++...
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp--~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP--DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET--TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECC--CCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 0000 0112367776 6666665532
Q ss_pred ---------------CCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeee
Q 038537 202 ---------------DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAV 266 (358)
Q Consensus 202 ---------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 266 (358)
+|.|..||+.+++....... +....--.+...+.+++.|+.||.|+.||.++++. +..
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~----lw~ 511 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY---VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEK----LWE 511 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE----EEE
T ss_pred cCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---CCCccCccceECCCEEEEECCCCcEEEEECCCCcc----cee
Confidence 36788899887554333211 11111124455788999999999999999999954 444
Q ss_pred ecCccc-ceEEEEeecc
Q 038537 267 LDGHRG-PVRCLAASLE 282 (358)
Q Consensus 267 ~~~h~~-~v~~i~~~~~ 282 (358)
++...+ .-.-+.|..+
T Consensus 512 ~~~~~~~~~~p~ty~~~ 528 (689)
T 1yiq_A 512 QPAASGVMAAPVTYSVD 528 (689)
T ss_dssp EECSSCCCSCCEEEEET
T ss_pred eeCCCCcccCceEEEEC
Confidence 443322 2234667677
No 217
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.30 E-value=2.1e-10 Score=95.97 Aligned_cols=260 Identities=8% Similarity=-0.034 Sum_probs=157.9
Q ss_pred cEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEe----------CCceEEEEecccccccccccccccCCCceeeee
Q 038537 10 RIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTN----------KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 10 ~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
.|.+.|..+++.+..+.....+-..+++++++++++. .++.|.+||..+.+......+...+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~-------- 118 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP-------- 118 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC--------
T ss_pred eEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcc--------
Confidence 7889999999999998876666445566888888775 3789999999998877654332000
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEec--CCeEEE--EEccCCcccccccccccccCeEEEEEcCCC-CEEEEEeCC
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSF--DKTVKA--WRVLDKRCTCVDSFVAHESNVNAIVVNQDD-GFVFTCSSD 154 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 154 (358)
.. ........+.++|+|++++++.. +..+.+ +|..+ . ..+.. .+. ..+.|++ ..+++.+.|
T Consensus 119 ---~~--~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v----~~i~v-~~~---~~~~p~g~~~~~~~~~d 184 (368)
T 1mda_H 119 ---RF--SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-D----QLTKS-ASC---FHIHPGAAATHYLGSCP 184 (368)
T ss_dssp ---SC--CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-E----EEEEC-SSC---CCCEEEETTEEECCCCT
T ss_pred ---cc--ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-c----eEEEC-CCc---eEEccCCCeEEEEEcCC
Confidence 00 00122457899999999998875 467888 88866 1 11211 111 1123333 355566778
Q ss_pred CcEEEEEcee-----cCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCC----cccc-----
Q 038537 155 GSVKIWRRVY-----RENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGG----FNHG----- 220 (358)
Q Consensus 155 g~i~~wd~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~----- 220 (358)
|.+.+.|+.+ ++..............+. . .+ ++..++..+. +.+.+.|+...... ....
T Consensus 185 g~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~--~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~ 257 (368)
T 1mda_H 185 ASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-AN--YPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRK 257 (368)
T ss_dssp TSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ET--TTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred CCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cc--cCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccc
Confidence 8888888765 221110000011112222 2 43 5555555555 89999998642211 0000
Q ss_pred -ceeecccceeEEEeeeCCEEEEeeC---------CCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCe
Q 038537 221 -GFLQGHCFAVLCLVAIEKLIFSGSE---------DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGF 290 (358)
Q Consensus 221 -~~~~~~~~~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~ 290 (358)
............++++++.++.+.. ++.+.++|+.+.+ .+..+.... ...+|+|+|+ ++
T Consensus 258 ~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~----vv~~i~vg~-~p~gi~~s~D------g~ 326 (368)
T 1mda_H 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ----TSGPISNGH-DSDAIIAAQD------GA 326 (368)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC----EEECCEEEE-EECEEEECCS------SS
T ss_pred ccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe----EEEEEECCC-CcceEEECCC------CC
Confidence 0011122223578999887776533 2356699999984 455554332 5789999999 65
Q ss_pred -EEEEcc-CCCcEEEEEeeeC
Q 038537 291 -LVYSSS-LDQTFKVWRVKVM 309 (358)
Q Consensus 291 -~l~s~~-~dg~v~iw~~~~~ 309 (358)
++++.. .++.|.++|+.+.
T Consensus 327 ~l~va~~~~~~~VsVID~~t~ 347 (368)
T 1mda_H 327 SDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp CEEEEEETTTTEEEEEESSSC
T ss_pred EEEEEccCCCCeEEEEECCCC
Confidence 667776 5999999999853
No 218
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.29 E-value=3.3e-09 Score=88.16 Aligned_cols=208 Identities=11% Similarity=-0.041 Sum_probs=124.9
Q ss_pred CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEc
Q 038537 39 DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRV 118 (358)
Q Consensus 39 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 118 (358)
+..+++...++.|..||..+++... ......+.+++++++++++++. .+ .|.+||.
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~~----------------------~~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~ 116 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKTV----------------------HALPFMGSALAKISDSKQLIAS-DD-GLFLRDT 116 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEE----------------------EECSSCEEEEEEEETTEEEEEE-TT-EEEEEET
T ss_pred CEEEEEECCCCEEEEEECCCCcEEE----------------------EECCCcceEEEEeCCCeEEEEE-CC-CEEEEEC
Confidence 3456666678899999987654311 0123468999999999876654 44 4999998
Q ss_pred cCCcccccccccc--cccCeEEEEEcCCCCEEEEEeCC----CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCC
Q 038537 119 LDKRCTCVDSFVA--HESNVNAIVVNQDDGFVFTCSSD----GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFD 192 (358)
Q Consensus 119 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 192 (358)
.+++...+..... ....+.+++++|+++++++...+ +...+|.+..+ .... +.........++|+| +
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g-~~~~----~~~~~~~~~~i~~s~--d 189 (326)
T 2ghs_A 117 ATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG-KVTK----LFADISIPNSICFSP--D 189 (326)
T ss_dssp TTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT-EEEE----EEEEESSEEEEEECT--T
T ss_pred CCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCC-cEEE----eeCCCcccCCeEEcC--C
Confidence 8776332222111 12458899999999977655422 23445544322 1111 111233567889988 8
Q ss_pred CcEEEEe-ecCCcEEEEEcc--CC-cCCc-cccceeecccce--eEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeee
Q 038537 193 NYFLYSG-SSDGSINFWEKD--KM-SGGF-NHGGFLQGHCFA--VLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLA 265 (358)
Q Consensus 193 ~~~l~~~-~~dg~i~i~d~~--~~-~~~~-~~~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 265 (358)
++.++.+ +.++.|.+||+. ++ .... .....+...... -.+++.++++.++...++.|.+||. ++ +.+.
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g----~~~~ 264 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG----NHIA 264 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC----CEEE
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC----CEEE
Confidence 8766544 557899999986 32 1110 001011111112 2455567777777666788999998 44 3344
Q ss_pred eecCcccceEEEEee-cc
Q 038537 266 VLDGHRGPVRCLAAS-LE 282 (358)
Q Consensus 266 ~~~~h~~~v~~i~~~-~~ 282 (358)
.+..+...+++++|. ++
T Consensus 265 ~i~~~~~~~~~~af~g~d 282 (326)
T 2ghs_A 265 RYEVPGKQTTCPAFIGPD 282 (326)
T ss_dssp EEECSCSBEEEEEEESTT
T ss_pred EEECCCCCcEEEEEecCC
Confidence 555566679999998 77
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.27 E-value=2e-09 Score=88.63 Aligned_cols=214 Identities=8% Similarity=0.089 Sum_probs=127.9
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec--CCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+++++..++.|..|+. +++ ...+..+...+..+.++ ++++++...++.|.+|+.+ ++....... ..
T Consensus 59 l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~--~~------- 126 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGR--YA------- 126 (305)
T ss_dssp EEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECE--ET-------
T ss_pred EEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEec--cC-------
Confidence 3567777889999987 444 34555566677777774 5555544456789999875 332110000 00
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEE----Eec-------------CCeEEEEEccCCcccccccccccccCeEEEEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYT----GSF-------------DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVV 141 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 141 (358)
......+..+++.|+|++.++ |.. .+.|..+|..+++...+ . .......++|
T Consensus 127 -------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~---~-~~~~p~gl~~ 195 (305)
T 3dr2_A 127 -------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM---A-DLDHPNGLAF 195 (305)
T ss_dssp -------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE---E-EESSEEEEEE
T ss_pred -------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE---e-cCCCCcceEE
Confidence 011234678999999998876 432 25677777766653222 2 3455788999
Q ss_pred cCCCCEEEEEeCC------CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcC
Q 038537 142 NQDDGFVFTCSSD------GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSG 215 (358)
Q Consensus 142 ~~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 215 (358)
+|+++.|+.+... +.|.+|++..+. .................+++.+ ++++. ++..+ .|.+|+... .
T Consensus 196 spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~--~G~lw-v~~~~-gv~~~~~~g-~- 268 (305)
T 3dr2_A 196 SPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDR--GGWLW-SSSGT-GVCVFDSDG-Q- 268 (305)
T ss_dssp CTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECT--TSCEE-ECCSS-EEEEECTTS-C-
T ss_pred cCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECC--CCCEE-EecCC-cEEEECCCC-C-
Confidence 9999988777665 689999986443 1111111111234566788887 78744 44444 499998753 1
Q ss_pred Cccccceeec-ccceeEEEeeeCCEEEEeeCCC
Q 038537 216 GFNHGGFLQG-HCFAVLCLVAIEKLIFSGSEDT 247 (358)
Q Consensus 216 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg 247 (358)
....+.. ....-.++.++++.|+.++.++
T Consensus 269 ---~~~~~~~~~~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 269 ---LLGHIPTPGTASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp ---EEEEEECSSCCCEEEECTTSCEEEEEETTE
T ss_pred ---EEEEEECCCceeEEEEeCCCCEEEEEcCCe
Confidence 1111211 1223355666777788777654
No 220
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.27 E-value=1.3e-09 Score=93.33 Aligned_cols=199 Identities=13% Similarity=0.078 Sum_probs=130.5
Q ss_pred CceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC--cEEEEEceecCC
Q 038537 90 DCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG--SVKIWRRVYREN 167 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~ 167 (358)
.....|+|+++++++++...++.|++||..++....+ ... ..... ++|+++++.|+++..++ .|.+++...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~--~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV--HPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE--EET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe--ecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 4678999999999777777789999999987763222 222 22233 99999999999988866 688888754432
Q ss_pred cceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcc----ccceeeccc-ceeEEEeee-CCEEE
Q 038537 168 SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFN----HGGFLQGHC-FAVLCLVAI-EKLIF 241 (358)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~~~~~~~~-~~~~~~~~~-~~~l~ 241 (358)
..............+.+++++| ++..|+.+..++.|+.||......... ... ..+.. ..-.+++++ +.+++
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p--~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g-~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDE--TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSG-SLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECT--TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCS-CCCCSSCCEEEEETTTTEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeC--CCCeEEEEECCCcEEEEECCCCCEEEEecccccC-CCCCCccccEEEeCCCCEEEE
Confidence 1111111111346678899987 556666677788999999876321110 000 00111 114677774 56666
Q ss_pred EeeCCCeEEEEEcCCCceeeeeeeeecCc---------------ccceEEEEeecccceeeeCeEEEEcc-CCCcEEEEE
Q 038537 242 SGSEDTTIRVWRRAEGGCYHECLAVLDGH---------------RGPVRCLAASLEMEKVVMGFLVYSSS-LDQTFKVWR 305 (358)
Q Consensus 242 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h---------------~~~v~~i~~~~~~~~~~~~~~l~s~~-~dg~v~iw~ 305 (358)
+-..++.|+.|+.... +..+.++ -.....++++|+ |.++++-+ .++.|+.|+
T Consensus 284 ~d~~~~~I~~~~~~g~------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d------G~lyvad~~~~~~I~~~~ 351 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGE------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED------GNFYIVDGFKGYCLRKLD 351 (409)
T ss_dssp EETTTTEEEEECTTCC------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT------CCEEEEETTTTCEEEEEE
T ss_pred EeCCCCEEEEEecCCC------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC------CCEEEEeCCCCCEEEEEE
Confidence 6677889999987653 1111122 234789999999 78888887 889999999
Q ss_pred ee
Q 038537 306 VK 307 (358)
Q Consensus 306 ~~ 307 (358)
+.
T Consensus 352 ~~ 353 (409)
T 3hrp_A 352 IL 353 (409)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.27 E-value=2.6e-10 Score=104.78 Aligned_cols=203 Identities=12% Similarity=0.079 Sum_probs=127.5
Q ss_pred ccCCCceEEEEEeCCCCEEEEE-----ecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCc----
Q 038537 86 QQHRDCVSCMAFYHAEGLLYTG-----SFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGS---- 156 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---- 156 (358)
.+|...+..++|||||++|+.+ +....|++||+.+++. +.. .........++|+ |++.|+.++.+..
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~--~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~ 200 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQP--LET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSE 200 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSE--EEE-EEEEEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCC--Ccc-ccCCceeccEEEe-CCCEEEEEEecCccccc
Confidence 3466678999999999988853 3335799999999872 221 1111113567899 9999998887743
Q ss_pred ---------EEEEEceecCCcceeeeeecc-cCCceeEEEEeecCCCcEEEEeec----CCcEEEEEccCCcCCccccce
Q 038537 157 ---------VKIWRRVYRENSHTLTMTLKF-QQSSVNALALSSFFDNYFLYSGSS----DGSINFWEKDKMSGGFNHGGF 222 (358)
Q Consensus 157 ---------i~~wd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~ 222 (358)
|++|++.+............. +......+.++| ++++|+.... +..|+++|+.+.......
T Consensus 201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~--- 275 (693)
T 3iuj_A 201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLSQENAPLLT--- 275 (693)
T ss_dssp ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETTSTTCCCEE---
T ss_pred ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECCCCCCceEE---
Confidence 999998765544444444333 445567788887 8888765443 358999998774322221
Q ss_pred eeccccee-EEEeeeCCEEEEee-C---CCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEcc-
Q 038537 223 LQGHCFAV-LCLVAIEKLIFSGS-E---DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSS- 296 (358)
Q Consensus 223 ~~~~~~~~-~~~~~~~~~l~~~~-~---dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~- 296 (358)
+..+.... ..+++++..|+..+ . .+.|..+|+.++.. .....+..|...+. .|+++ ++.|+...
T Consensus 276 l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~--~~s~~------g~~lv~~~~ 345 (693)
T 3iuj_A 276 VQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGP--AHWRDLIPERQQVL--TVHSG------SGYLFAEYM 345 (693)
T ss_dssp EECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSSCE--EEEEE------TTEEEEEEE
T ss_pred EeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCc--cccEEEecCCCCEE--EEEEE------CCEEEEEEE
Confidence 22222222 23567766555433 3 36899999987632 11234455666555 88888 55555444
Q ss_pred CCC--cEEEEEee
Q 038537 297 LDQ--TFKVWRVK 307 (358)
Q Consensus 297 ~dg--~v~iw~~~ 307 (358)
.|| .|++|++.
T Consensus 346 ~~g~~~l~~~d~~ 358 (693)
T 3iuj_A 346 VDATARVEQFDYE 358 (693)
T ss_dssp ETTEEEEEEECTT
T ss_pred ECCeeEEEEEECC
Confidence 454 57777764
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.26 E-value=2.6e-09 Score=87.99 Aligned_cols=227 Identities=11% Similarity=0.049 Sum_probs=134.4
Q ss_pred eeecccceEEEEe--cCC-EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCC
Q 038537 25 IKARHGEVRAILA--HDN-MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAE 101 (358)
Q Consensus 25 ~~~h~~~v~~i~~--~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 101 (358)
+..+........+ +++ ++++...++.|..|+.. +.. . .+..+...+..++++++|
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~--------------------~~~~~~~~~~gl~~d~dG 97 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-D--------------------VLLDATAFTNGNAVDAQQ 97 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-E--------------------EEEESCSCEEEEEECTTS
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-E--------------------EEeCCCCccceeeECCCC
Confidence 3333334444444 566 66777778999999874 321 1 112344568899999999
Q ss_pred CEEEEEecCCeEEEEEccCCccccccc-ccc-cccCeEEEEEcCCCCEEEE----EeC-------------CCcEEEEEc
Q 038537 102 GLLYTGSFDKTVKAWRVLDKRCTCVDS-FVA-HESNVNAIVVNQDDGFVFT----CSS-------------DGSVKIWRR 162 (358)
Q Consensus 102 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~-~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~~wd~ 162 (358)
+++++...++.|.+|+.. ++...+.. ... ....+..++++++|+++++ |.. .+.|..+|.
T Consensus 98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 976665566889999975 44222211 111 1234678999999998876 332 245666665
Q ss_pred eecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC------CcEEEEEccCCcCCcccccee----ecccceeEE
Q 038537 163 VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD------GSINFWEKDKMSGGFNHGGFL----QGHCFAVLC 232 (358)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~ 232 (358)
.+++.. .+ . .......++|+| +++.|+.+... +.|.+|++.... ......+ .+.. .-++
T Consensus 177 ~~g~~~-~~---~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~--l~~~~~~~~~~~~~p-dgi~ 245 (305)
T 3dr2_A 177 DGSPLQ-RM---A--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGA--LHDRRHFASVPDGLP-DGFC 245 (305)
T ss_dssp SSCCCE-EE---E--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTE--EEEEEEEECCSSSCC-CSEE
T ss_pred CCCcEE-EE---e--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCC--ccCCeEEEECCCCCC-CeEE
Confidence 433321 11 1 234567889998 88877777665 689999987522 1000001 1111 1256
Q ss_pred EeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCC
Q 038537 233 LVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQ 299 (358)
Q Consensus 233 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg 299 (358)
++++|++ .+++.+| |.+|+.... .+..+..+. .+.+++|.|+ ++.|..++.++
T Consensus 246 ~d~~G~l-wv~~~~g-v~~~~~~g~-----~~~~~~~~~-~~~~~~f~~d------~~~L~it~~~~ 298 (305)
T 3dr2_A 246 VDRGGWL-WSSSGTG-VCVFDSDGQ-----LLGHIPTPG-TASNCTFDQA------QQRLFITGGPC 298 (305)
T ss_dssp ECTTSCE-EECCSSE-EEEECTTSC-----EEEEEECSS-CCCEEEECTT------SCEEEEEETTE
T ss_pred ECCCCCE-EEecCCc-EEEECCCCC-----EEEEEECCC-ceeEEEEeCC------CCEEEEEcCCe
Confidence 6777884 4444554 999998532 344444443 5889999987 65666665554
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.25 E-value=3.3e-12 Score=108.06 Aligned_cols=184 Identities=15% Similarity=0.096 Sum_probs=99.6
Q ss_pred ecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEE
Q 038537 37 AHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAW 116 (358)
Q Consensus 37 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iw 116 (358)
.+++.+++++.||.|..||..+++..+.... +.+.+..+..++..+++++.||.|+.|
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~----------------------~~~~s~p~~~~g~~~v~~s~dg~l~a~ 64 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE----------------------DPVLQVPTHVEEPAFLPDPNDGSLYTL 64 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCEEEEEEC----------------------CCSCCCC-----CCEEECTTTCCEEEC
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCEEEEecC----------------------CCceecceEcCCCEEEEeCCCCEEEEE
Confidence 4688999999999999999999988765432 123333344567778888899999999
Q ss_pred EccCCccccccccccccc-CeE-EEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCc
Q 038537 117 RVLDKRCTCVDSFVAHES-NVN-AIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNY 194 (358)
Q Consensus 117 d~~~~~~~~~~~~~~~~~-~v~-~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 194 (358)
|..+++ .+..+..+.. .+. +..+. .+..+++++.++.|+.||..+++..+.... +. ...++| ++.
T Consensus 65 d~~tG~--~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~----~~----~~~~~p--~~~ 131 (369)
T 2hz6_A 65 GSKNNE--GLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS----AF----ADSLSP--STS 131 (369)
T ss_dssp -----C--CSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------
T ss_pred ECCCCc--eeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC----CC----cccccc--cCC
Confidence 998876 2222221110 010 00111 345678888899999999988876554432 11 133455 678
Q ss_pred EEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeC---CEEEEeeCCCeEEEEEcCCCce
Q 038537 195 FLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE---KLIFSGSEDTTIRVWRRAEGGC 259 (358)
Q Consensus 195 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~ 259 (358)
.+++++.|+.|+.||.++++...... .... ....+..+. ..+++++.||.|+.||..+++.
T Consensus 132 ~v~~~~~dg~v~a~d~~tG~~~W~~~--~~~~--~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 132 LLYLGRTEYTITMYDTKTRELRWNAT--YFDY--AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp -EEEEEEEEEEECCCSSSSSCCCEEE--EEEE--CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred EEEEEecCCEEEEEECCCCCEEEeEe--cccc--cCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 89999999999999998865443321 1111 111122221 5677888999999999999954
No 224
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.24 E-value=9.1e-09 Score=84.32 Aligned_cols=187 Identities=9% Similarity=0.077 Sum_probs=114.3
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
+++...++.|..||..+++.. .+ .....+.++.+ +++ ++.+. ++.|.+||..+++.........
T Consensus 28 ~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~~~---------- 93 (297)
T 3g4e_A 28 LFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATVDN---------- 93 (297)
T ss_dssp EEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEECCT----------
T ss_pred EEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEecCC----------
Confidence 456667788999998876642 22 23466777776 456 44444 5679999987654321111000
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecC---------CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEE
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD---------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFT 150 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 150 (358)
......+..++++|+|+++++.... ..-.+|.+.... ....+.........++|+|+++.++.
T Consensus 94 ------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 94 ------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH--HVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp ------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS--CEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred ------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC--CEEEEeeccccccceEEcCCCCEEEE
Confidence 0123457899999999966654321 234555554322 12222333445689999999987654
Q ss_pred -EeCCCcEEEEEce--ecCCc-ceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 151 -CSSDGSVKIWRRV--YRENS-HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 151 -~~~dg~i~~wd~~--~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
.+.++.|.+|++. ++... ......+......+..+++.+ ++++.++....+.|..||..+
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~--~G~lwva~~~~~~v~~~d~~t 229 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA--EGKLWVACYNGGRVIRLDPVT 229 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT--TSCEEEEEETTTEEEEECTTT
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC--CCCEEEEEcCCCEEEEEcCCC
Confidence 4557889999873 22211 111122223345678889987 888888777788899999875
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.20 E-value=7.9e-12 Score=105.76 Aligned_cols=180 Identities=10% Similarity=0.088 Sum_probs=99.9
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeecccceEEE--EecCCEEEEEeCCceEEEEecccccccccccccccCCCceeee
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAI--LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i--~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
+|++++.||.|+.||..+++.+..+.. +.+.+. ..++..+++++.||.|+.||..+++.+........
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~-------- 80 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP-------- 80 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH--------
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc--------
Confidence 378899999999999999999888776 344332 23556778888999999999988776543221100
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
. .....++ +. .+..+++|+.++.|+.||..+++ .+..+..+. ...++|++..+++++.|+.|+
T Consensus 81 -----~-~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~--~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~ 143 (369)
T 2hz6_A 81 -----E-LVQASPC----RS-SDGILYMGKKQDIWYVIDLLTGE--KQQTLSSAF----ADSLSPSTSLLYLGRTEYTIT 143 (369)
T ss_dssp -----H-HHTTCSC----C------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEE
T ss_pred -----c-ccccCce----Ee-cCCEEEEEeCCCEEEEEECCCCc--EEEEecCCC----cccccccCCEEEEEecCCEEE
Confidence 0 0001111 11 34567888899999999999988 444444332 234566888899999999999
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCC---cEEEEeecCCcEEEEEccCCcC
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDN---YFLYSGSSDGSINFWEKDKMSG 215 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~ 215 (358)
.||.++++..+..... . .....+.. +. ..+++++.||.++.||.++++.
T Consensus 144 a~d~~tG~~~W~~~~~--~----~~~~~~~~--~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 144 MYDTKTRELRWNATYF--D----YAASLPED--DVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp CCCSSSSSCCCEEEEE--E----ECCBCCCC--CTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred EEECCCCCEEEeEecc--c----ccCccccC--CccccceEEEECCCCEEEEEECCCCcE
Confidence 9999888766554321 1 11122221 21 5677788999999999987543
No 226
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.19 E-value=1.2e-08 Score=85.30 Aligned_cols=242 Identities=10% Similarity=0.056 Sum_probs=141.6
Q ss_pred CCCcEEEEeCCCceeeeeeeec---------ccceEEEEecCCEEEEEeC--CceEEEEecccccccccccccccCCCce
Q 038537 7 SSTRIRVWRQPDCVERGFIKAR---------HGEVRAILAHDNMLFTTNK--DCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~~h---------~~~v~~i~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
.++.|.+||..+.+.+..+... ...-..+++++++++++.. ++.|.++|+.+.+.+......
T Consensus 107 ~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~------- 179 (386)
T 3sjl_D 107 RTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP------- 179 (386)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-------
T ss_pred CCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-------
Confidence 4678999999999988877542 2233467778998888764 689999999988776543221
Q ss_pred eeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccC-Cccccc--ccccccccCeE-EEEEc-CCCCEEEE
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLD-KRCTCV--DSFVAHESNVN-AIVVN-QDDGFVFT 150 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~--~~~~~~~~~v~-~~~~~-~~~~~l~~ 150 (358)
+ . ...+....+.+++.+.||++.+.++.+ ++.... ..+.....++. ...|. ++|++++
T Consensus 180 -----------g----~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~- 242 (386)
T 3sjl_D 180 -----------D----C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW- 242 (386)
T ss_dssp -----------S----E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-
T ss_pred -----------C----c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-
Confidence 0 0 112222334566667777777777765 332100 01111112222 23554 5665544
Q ss_pred EeCCCcEEEEEceecCCcceeeee--------ecccCCceeEEEEeecCCCcEEEEeec----------CCcEEEEEccC
Q 038537 151 CSSDGSVKIWRRVYRENSHTLTMT--------LKFQQSSVNALALSSFFDNYFLYSGSS----------DGSINFWEKDK 212 (358)
Q Consensus 151 ~~~dg~i~~wd~~~~~~~~~~~~~--------~~~~~~~i~~~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~ 212 (358)
.+.+|.|++.|+............ ..........+++++ +++.++.... ...|.++|+.+
T Consensus 243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~--~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t 320 (386)
T 3sjl_D 243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR--ALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 320 (386)
T ss_dssp EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET--TTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC--CCCeEEEEeccccccccCCCCCEEEEEECCC
Confidence 566899999998544321110000 011123445677777 7777777643 25799999988
Q ss_pred CcCCccccceeecccceeEEEeeeCC-EEEEe-eCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecc
Q 038537 213 MSGGFNHGGFLQGHCFAVLCLVAIEK-LIFSG-SEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
.+..... ..++...-+.++++++ +|++. ..++.|.++|..++ +.+.++..- +.-+.|.+++|
T Consensus 321 ~kv~~~i---~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~----k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 321 GERLAKF---EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG----EELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp CCEEEEE---EEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC----CEEEEECCC-CSSCCEEEECC
T ss_pred CeEEEEE---ECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC----cEEEEecCC-CCCceeEECCc
Confidence 4322221 2334444578889986 66664 56899999999998 445555432 22244455554
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.19 E-value=1e-09 Score=91.33 Aligned_cols=187 Identities=16% Similarity=0.070 Sum_probs=108.7
Q ss_pred eEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCccee
Q 038537 92 VSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTL 171 (358)
Q Consensus 92 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 171 (358)
+.++...+++. ++.++.++.|..+|.. ++ ....+......+.++...+++.+++ ++ +.|..+| .++....
T Consensus 139 ~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~--~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~-- 208 (330)
T 3hxj_A 139 YATPIVSEDGT-IYVGSNDNYLYAINPD-GT--EKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKW-- 208 (330)
T ss_dssp CSCCEECTTSC-EEEECTTSEEEEECTT-SC--EEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEE--
T ss_pred eeeeEEcCCCE-EEEEcCCCEEEEECCC-CC--EeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEE--
Confidence 44455555555 6667888999999988 55 3333333445566777777777554 44 7889998 4433222
Q ss_pred eeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeee-CCEEEEeeCCCeEE
Q 038537 172 TMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI-EKLIFSGSEDTTIR 250 (358)
Q Consensus 172 ~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~ 250 (358)
........+.++...+ ++ .+..++.++.+..+|... .... ...........+..+ +..|..++.+|.|.
T Consensus 209 --~~~~~~~~~~~~~~~~--~g-~l~v~t~~~gl~~~~~~g-~~~~----~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~ 278 (330)
T 3hxj_A 209 --NFYAGYWTVTRPAISE--DG-TIYVTSLDGHLYAINPDG-TEKW----RFKTGKRIESSPVIGNTDTIYFGSYDGHLY 278 (330)
T ss_dssp --EECCSSCCCSCCEECT--TS-CEEEEETTTEEEEECTTS-CEEE----EEECSSCCCSCCEECTTSCEEEECTTCEEE
T ss_pred --EEccCCcceeceEECC--CC-eEEEEcCCCeEEEECCCC-CEeE----EeeCCCCccccceEcCCCeEEEecCCCCEE
Confidence 2222345577777764 44 566677778888887432 1111 111111111111222 45677788888899
Q ss_pred EEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 251 VWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 251 iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
.+|. +++ .+..+......+.++...++ + .|..++.+|.+++...+..+
T Consensus 279 ~~d~-~g~----~~~~~~~~~~~~~~~~~d~~------g-~l~~gt~~G~~~~~~~~~~~ 326 (330)
T 3hxj_A 279 AINP-DGT----EKWNFETGSWIIATPVIDEN------G-TIYFGTRNGKFYALFNLEHH 326 (330)
T ss_dssp EECT-TSC----EEEEEECSSCCCSCCEECTT------C-CEEEECTTSCEEEEEC----
T ss_pred EECC-CCc----EEEEEEcCCccccceEEcCC------C-EEEEEcCCCeEEEEeccccc
Confidence 9996 553 23333334455667777666 4 46668889999998876543
No 228
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.14 E-value=4.2e-09 Score=96.01 Aligned_cols=190 Identities=11% Similarity=0.100 Sum_probs=118.7
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccc----------e-EEEEecCCEEEEEeCCceEEEEeccccccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGE----------V-RAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~----------v-~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 70 (358)
|++++.++.|.-+|..+++.+..+...... + ..+...++.++.++.|+.|..+|..+++.+........
T Consensus 69 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~ 148 (668)
T 1kv9_A 69 IYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDP 148 (668)
T ss_dssp EEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCT
T ss_pred EEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCC
Confidence 567778899999999999988776543221 1 12344677888899999999999999988776543211
Q ss_pred CCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec------CCeEEEEEccCCcccccccccc-------------
Q 038537 71 PRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF------DKTVKAWRVLDKRCTCVDSFVA------------- 131 (358)
Q Consensus 71 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~------------- 131 (358)
... ......++ +. ++ .++.+.. +|.|..+|..+++. +-.+..
T Consensus 149 ~~~-----------~~~~~~P~----v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~--~W~~~~~~~~p~~~~~~~~ 209 (668)
T 1kv9_A 149 AKP-----------YSITGAPR----VV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKL--AWRFYTVPGDPALPYEHPE 209 (668)
T ss_dssp TSS-----------CBCCSCCE----EE-TT-EEEECCBCTTTCCBCEEEEEETTTCCE--EEEEESSCCCTTSCCSSHH
T ss_pred CCc-----------ceecCCCE----EE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcE--EEEecccCCCCCccccccc
Confidence 000 00011111 11 33 4555433 58899999988872 222210
Q ss_pred ------------------cccCeEEEEEcCCCCEEEEEeCCCc-------------------EEEEEceecCCcceeeee
Q 038537 132 ------------------HESNVNAIVVNQDDGFVFTCSSDGS-------------------VKIWRRVYRENSHTLTMT 174 (358)
Q Consensus 132 ------------------~~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~~wd~~~~~~~~~~~~~ 174 (358)
+......++++|+...++.++.++. |..+|..+++..+.....
T Consensus 210 ~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~ 289 (668)
T 1kv9_A 210 LREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVT 289 (668)
T ss_dssp HHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred cccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecC
Confidence 0111224688888888888887763 889999888766554332
Q ss_pred ecccC-------CceeEEEEeecCCCc---EEEEeecCCcEEEEEccCCc
Q 038537 175 LKFQQ-------SSVNALALSSFFDNY---FLYSGSSDGSINFWEKDKMS 214 (358)
Q Consensus 175 ~~~~~-------~~i~~~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~ 214 (358)
.|. .+.....+.. +++ .++.++.+|.++++|..+++
T Consensus 290 --~~~~wd~~~~~~~~~~d~~~--~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 290 --PGDSWDFTATQQITLAELNI--DGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp --TTCCSCCCCCSCEEEEEEEE--TTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred --CCccccccCCCCcEEEEecc--CCcEEEEEEEECCCCEEEEEECCCCC
Confidence 111 2222222333 554 68899999999999988755
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.13 E-value=8.7e-08 Score=79.57 Aligned_cols=183 Identities=7% Similarity=-0.024 Sum_probs=111.2
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
+++...++.|..||..+++... +. ....+.++.+ ++++++ ++.+ .|.+||..+++...... .+
T Consensus 64 ~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v-~~~~-gl~~~d~~~g~~~~~~~---~~-------- 128 (326)
T 2ghs_A 64 WWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLI-ASDD-GLFLRDTATGVLTLHAE---LE-------- 128 (326)
T ss_dssp EEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEE-EETT-EEEEEETTTCCEEEEEC---SS--------
T ss_pred EEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEE-EECC-CEEEEECCCCcEEEEee---CC--------
Confidence 4566677889999988776432 22 3456777765 455555 4444 48999987665321110 00
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEec------CCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEE-e
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSF------DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC-S 152 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 152 (358)
.......+.+++++|+|+++++... .+.|..++ +++ ...+..+......++|+|+++.++.+ +
T Consensus 129 -----~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~---~~~~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 129 -----SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK---VTKLFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp -----TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE---EEEEEEEESSEEEEEECTTSCEEEEEET
T ss_pred -----CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc---EEEeeCCCcccCCeEEcCCCCEEEEEEC
Confidence 0011245889999999987665432 24555555 444 22222333457899999999876555 4
Q ss_pred CCCcEEEEEce--ec-CCcc-eeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEcc
Q 038537 153 SDGSVKIWRRV--YR-ENSH-TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKD 211 (358)
Q Consensus 153 ~dg~i~~wd~~--~~-~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~ 211 (358)
.++.|.+||+. ++ .... .....+......+..+++.+ ++.+.++...++.|..||..
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~--~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA--EGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT--TSCEEEEEETTTEEEEECTT
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC--CCCEEEEEeCCCEEEEECCC
Confidence 57889999985 33 2111 11112222334567788876 78777776667889999874
No 230
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.12 E-value=2.5e-09 Score=88.96 Aligned_cols=248 Identities=15% Similarity=0.112 Sum_probs=142.3
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEec-CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
|..++.++.|..|| .+++.......+...+.++..+ ++.+..++.+ |..+|. +++........
T Consensus 33 l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~------------ 96 (330)
T 3hxj_A 33 IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTK------------ 96 (330)
T ss_dssp EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-------------
T ss_pred EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECC------------
Confidence 56777888899999 8887766655555555666664 5567666655 888885 44443322211
Q ss_pred CCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIW 160 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 160 (358)
........+. +..|..++.++.|..+|.. ++ ...........+.++...+++. +..++.++.|..+
T Consensus 97 --------~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~--~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~ 162 (330)
T 3hxj_A 97 --------KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GT--EKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAI 162 (330)
T ss_dssp ------------CCEEEE--TTEEEEECTTSEEEEECTT-SC--EEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEE
T ss_pred --------CCcccCceEE--CCEEEEEecCCEEEEEcCC-CC--EEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEE
Confidence 1111122222 4567788888999999987 55 3333333444556667776666 5567788999999
Q ss_pred EceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeC-CE
Q 038537 161 RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE-KL 239 (358)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 239 (358)
|.. ++.... .......+.++...+ ++.++ .++ +.|..+| .++..... .......+.++..++ ..
T Consensus 163 d~~-g~~~~~----~~~~~~~~~~~~~d~--~g~l~-v~t--~~l~~~d-~~g~~~~~----~~~~~~~~~~~~~~~~g~ 227 (330)
T 3hxj_A 163 NPD-GTEKWR----FKTNDAITSAASIGK--DGTIY-FGS--DKVYAIN-PDGTEKWN----FYAGYWTVTRPAISEDGT 227 (330)
T ss_dssp CTT-SCEEEE----EECSSCCCSCCEECT--TCCEE-EES--SSEEEEC-TTSCEEEE----ECCSSCCCSCCEECTTSC
T ss_pred CCC-CCEeEE----EecCCCceeeeEEcC--CCEEE-EEe--CEEEEEC-CCCcEEEE----EccCCcceeceEECCCCe
Confidence 975 332222 222344566666654 55544 444 7899998 44222111 111112233333332 26
Q ss_pred EEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 240 IFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 240 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
|..++.++.|..+|. +++ .+..+......+..+...++ + .|..++.+|.|..+|.
T Consensus 228 l~v~t~~~gl~~~~~-~g~----~~~~~~~~~~~~~~~~~~~~------g-~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 228 IYVTSLDGHLYAINP-DGT----EKWRFKTGKRIESSPVIGNT------D-TIYFGSYDGHLYAINP 282 (330)
T ss_dssp EEEEETTTEEEEECT-TSC----EEEEEECSSCCCSCCEECTT------S-CEEEECTTCEEEEECT
T ss_pred EEEEcCCCeEEEECC-CCC----EeEEeeCCCCccccceEcCC------C-eEEEecCCCCEEEECC
Confidence 667777888888875 342 22333333333444555544 4 5666777888888874
No 231
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.11 E-value=8.7e-08 Score=80.20 Aligned_cols=249 Identities=13% Similarity=0.100 Sum_probs=142.3
Q ss_pred cceEEEEe--cCCEEEEEe--CCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEE
Q 038537 30 GEVRAILA--HDNMLFTTN--KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLY 105 (358)
Q Consensus 30 ~~v~~i~~--~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 105 (358)
.....+++ +++.+++.. .++.++||.+.+++.. .++... ....+|...+..+++++++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~------~~p~~~--------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI------PFPPQS--------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE------ESCCCC--------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee------cCCCcc--------cCcccceeEeeEEEEcCCCcEEE
Confidence 55666766 466777753 2343666666533211 111000 01135667899999999987666
Q ss_pred EEec-----CCeEEEEEccCCccccccccc----ccccCeEEEEEcCCCCEE-EEEe---CCCcEEEEEceecCCcceee
Q 038537 106 TGSF-----DKTVKAWRVLDKRCTCVDSFV----AHESNVNAIVVNQDDGFV-FTCS---SDGSVKIWRRVYRENSHTLT 172 (358)
Q Consensus 106 ~~~~-----dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l-~~~~---~dg~i~~wd~~~~~~~~~~~ 172 (358)
+-.. ++.|.+||+.+++......+. .+...+..+++++++..+ ++-. .++.|.+||+.+++....+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~ 162 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ 162 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec
Confidence 5433 578999999887722111221 123456899999865554 4444 57899999986543211110
Q ss_pred e-----------eecc--------------cCCceeEEEEeecCCCcEEEEeecCC-cEEEEEccCCcC-Cc---cccc-
Q 038537 173 M-----------TLKF--------------QQSSVNALALSSFFDNYFLYSGSSDG-SINFWEKDKMSG-GF---NHGG- 221 (358)
Q Consensus 173 ~-----------~~~~--------------~~~~i~~~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~-~~---~~~~- 221 (358)
. ...+ ....+..++++| +++.|+.+..++ .+..++...... .. ....
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~--dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDA--ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECT--TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEecc--CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 0 0000 012357899998 888888877665 555554321110 00 0000
Q ss_pred -eeecc--cceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 222 -FLQGH--CFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 222 -~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
...++ ...-++++++++++++...++.|.+||..+++. ..+... .+.....++++.++ +.++++.+..
T Consensus 241 ~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~--~~~~~~-~~~~~p~~va~~~~------g~l~v~~~~~ 311 (343)
T 2qe8_A 241 IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY--KLLVTD-EKLSWTDSFNFGSD------GYLYFDCNQL 311 (343)
T ss_dssp CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE--EEEEEC-GGGSCEEEEEECTT------SCEEEEECCG
T ss_pred eEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE--EEEEEC-CceecCCeeEECCC------CcEEEEeCcc
Confidence 01111 112367788899999988999999999855532 222221 13456889999988 7777777655
Q ss_pred CcEEE
Q 038537 299 QTFKV 303 (358)
Q Consensus 299 g~v~i 303 (358)
+.+.+
T Consensus 312 ~~~~~ 316 (343)
T 2qe8_A 312 HHSAP 316 (343)
T ss_dssp GGSGG
T ss_pred ccccc
Confidence 44433
No 232
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.10 E-value=1.1e-07 Score=80.33 Aligned_cols=221 Identities=10% Similarity=0.120 Sum_probs=134.2
Q ss_pred CEEeeeCCCcEEEEeCCCc----eeeeeee------ecc-cceE--EEEecCCEEEEEeCC------ceEEEEecccccc
Q 038537 1 MVFTGSSSTRIRVWRQPDC----VERGFIK------ARH-GEVR--AILAHDNMLFTTNKD------CKIRIWNFTVSDN 61 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~----~~~~~~~------~h~-~~v~--~i~~~~~~l~s~~~d------g~i~iw~~~~~~~ 61 (358)
++++|..++.|.|+|+.+. +..+.+. ... ..-. .+.+++ .++++..+ |.|.+.|..+.+.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 3567888899999998654 5555552 000 0111 223456 66666555 7899999998876
Q ss_pred cccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe-------------------cCCeEEEEEccCCc
Q 038537 62 FRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS-------------------FDKTVKAWRVLDKR 122 (358)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-------------------~dg~i~iwd~~~~~ 122 (358)
+........ -...-..+.|+|+++.+++.. .+.+|.+||+.+++
T Consensus 177 ~~~~~~~~~-----------------~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 177 LGKWEIDRG-----------------DQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp EEECCSBCT-----------------TCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred EEEEccCCC-----------------CccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 654332111 111123578899999888875 36899999999876
Q ss_pred cccccccccc--ccCeEEEEE--cCCCCEEEEEeC------CCcEEEEEceecCCcceeeeeecc---------------
Q 038537 123 CTCVDSFVAH--ESNVNAIVV--NQDDGFVFTCSS------DGSVKIWRRVYRENSHTLTMTLKF--------------- 177 (358)
Q Consensus 123 ~~~~~~~~~~--~~~v~~~~~--~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~--------------- 177 (358)
.+.++... ......+.| +|+++++.++++ +++|.+|....+.-..........
T Consensus 240 --~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~ 317 (462)
T 2ece_A 240 --RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFK 317 (462)
T ss_dssp --EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGT
T ss_pred --EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccc
Confidence 44444331 234456656 999998888775 568877765432110000000000
Q ss_pred -cCCceeEEEEeecCCCcEEEEeec-CCcEEEEEccCCcCCccccceee-c-----------c----cceeEEEeeeCCE
Q 038537 178 -QQSSVNALALSSFFDNYFLYSGSS-DGSINFWEKDKMSGGFNHGGFLQ-G-----------H----CFAVLCLVAIEKL 239 (358)
Q Consensus 178 -~~~~i~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~-~-----------~----~~~~~~~~~~~~~ 239 (358)
.......+.+++ ++++|.++.. .+.|.+||+..... .+...... + . .-.-..++++|++
T Consensus 318 ~~~~~pa~I~lS~--DGrfLYVSnrg~d~VavfdV~d~~~-~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~ 394 (462)
T 2ece_A 318 AVPPLVTDIDISL--DDKFLYLSLWGIGEVRQYDISNPFK-PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRR 394 (462)
T ss_dssp EECCCCCCEEECT--TSCEEEEEETTTTEEEEEECSSTTS-CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSE
T ss_pred cCCCceeEEEECC--CCCEEEEEeCCCCEEEEEEecCCCC-cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCE
Confidence 024578889998 8888877765 78999999864321 22222221 1 0 1244778899998
Q ss_pred EEEee
Q 038537 240 IFSGS 244 (358)
Q Consensus 240 l~~~~ 244 (358)
|+++.
T Consensus 395 LyVaN 399 (462)
T 2ece_A 395 VYVTN 399 (462)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 88876
No 233
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.09 E-value=2.3e-07 Score=78.32 Aligned_cols=219 Identities=7% Similarity=-0.002 Sum_probs=133.1
Q ss_pred CCCcEEEEeCCCceeeeeeeec---------ccceEEEEecCCEEEEEeC--CceEEEEeccccccccc-ccccccCCCc
Q 038537 7 SSTRIRVWRQPDCVERGFIKAR---------HGEVRAILAHDNMLFTTNK--DCKIRIWNFTVSDNFRT-KKVTTLPRRS 74 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~~h---------~~~v~~i~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~-~~~~~~~~~~ 74 (358)
.++.|.+||..+.+.+..+... ...-..+++++++|+++.. ++.|.++| .+++.... ...
T Consensus 95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~------- 166 (373)
T 2mad_H 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS------- 166 (373)
T ss_pred CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-------
Confidence 3678999999988877766432 1112356678999998874 57899999 87765432 111
Q ss_pred eeeeecCCCccccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCccccccc---ccccccCe-EEEEEcCCCCEEE
Q 038537 75 SFLSFSKSNTQQQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCVDS---FVAHESNV-NAIVVNQDDGFVF 149 (358)
Q Consensus 75 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v-~~~~~~~~~~~l~ 149 (358)
. .|+.+.|++ +.+++.+.||.+.++|. +++...... ......++ ....+.+++..++
T Consensus 167 --------------~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 228 (373)
T 2mad_H 167 --------------P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV 228 (373)
T ss_pred --------------C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEE
Confidence 0 124455554 45566778899999999 665221100 00112222 2345666666555
Q ss_pred EEeCCCcEEEEEceecCCcceeeeeec----------ccCCceeEEEEeecCCCcEEEEeec----------CCcEEEEE
Q 038537 150 TCSSDGSVKIWRRVYRENSHTLTMTLK----------FQQSSVNALALSSFFDNYFLYSGSS----------DGSINFWE 209 (358)
Q Consensus 150 ~~~~dg~i~~wd~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~l~~~~~----------dg~i~i~d 209 (358)
..+.++.+.+.|+...... ....+. ........+.++| +++.++++.. ++.|.++|
T Consensus 229 ~~~~~~~v~vid~~~~~~~--v~~~~~~~~~~~~~~~~~p~g~~~~~~s~--d~~~lyV~~~~~~~~~~~~~~~~V~VID 304 (373)
T 2mad_H 229 WPVYSGKILQADISAAGAT--NKAPIDALSGGRKADTWRPGGWQQVAYLK--SSDGIYLLTSEQSAWKLHAAAKEVTSVT 304 (373)
T ss_pred EEcCCceEEEEeccCCcce--EeeeeeecCCcccccceecCceEeEEECC--CCCEEEEEeccCCcccccCCCCeEEEEE
Confidence 5557889999998643211 111111 0122234467777 7777777543 35799999
Q ss_pred ccCCcCCccccceeecccceeEEEeeeCC-EEEEee-CCCeEEEEEcCCCc
Q 038537 210 KDKMSGGFNHGGFLQGHCFAVLCLVAIEK-LIFSGS-EDTTIRVWRRAEGG 258 (358)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~ 258 (358)
+.+.+..... ..+....-..++++++ +++++. .++.|.++|+.+++
T Consensus 305 ~~t~~vv~~i---~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 305 GLVGQTSSQI---SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred CCCCEEEEEE---ECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 9874322221 2233345578889998 777776 58999999999984
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.04 E-value=3.5e-08 Score=86.24 Aligned_cols=263 Identities=10% Similarity=0.054 Sum_probs=160.4
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeee---------------------------------ccc-ce-------EEEEe---
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKA---------------------------------RHG-EV-------RAILA--- 37 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~---------------------------------h~~-~v-------~~i~~--- 37 (358)
+.+|+..|.|+|+-+.+++.+..+.. +.. .+ ..+++
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 67899999999999887776654321 000 11 24555
Q ss_pred --cCCEEEEEeC-CceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEE-e-CCCCEEEEEe----
Q 038537 38 --HDNMLFTTNK-DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAF-Y-HAEGLLYTGS---- 108 (358)
Q Consensus 38 --~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~~l~~~~---- 108 (358)
+|++++.... ++.|.+.|+.+.+......+ .....+..+++ + |+++++++++
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-------------------p~g~~phg~~~~~~p~~~~v~~~~~~~~ 158 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-------------------PNAKGIHGLRPQKWPRSNYVFCNGEDET 158 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-------------------SSCCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-------------------CCCCCCcceeeeecCCCcEEEEeccccc
Confidence 6677666654 56799999998876543221 11233677887 4 8999988884
Q ss_pred --------------cCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC-------------------
Q 038537 109 --------------FDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG------------------- 155 (358)
Q Consensus 109 --------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------- 155 (358)
.++.+.+.|..+.+ ....+.--. ....++++|+++++++.+.+.
T Consensus 159 p~~~dg~~l~~~~~~~~~vtvID~~t~~--v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V 235 (595)
T 1fwx_A 159 PLVNDGTNMEDVANYVNVFTAVDADKWE--VAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVV 235 (595)
T ss_dssp ESSCSSSSTTCGGGEEEEEEEEETTTTE--EEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEE
T ss_pred ccCCCCcccccccccCceEEEEECCCCe--EEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEE
Confidence 34689999998876 444433212 346678999999999888653
Q ss_pred -------------------cEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEee-cCCcEEEEEccCCcC
Q 038537 156 -------------------SVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS-SDGSINFWEKDKMSG 215 (358)
Q Consensus 156 -------------------~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~ 215 (358)
.|.+.|.++.+.. .+..... -.....++.++| ||+++++++ .+..|.++|+.+...
T Consensus 236 ~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~-~~~~~Ip-vg~~PhGv~~sP--DGk~v~V~~~~s~~VsVid~~~~~~ 311 (595)
T 1fwx_A 236 FNIAEIEKAIAAGDYQELNGVKVVDGRKEASS-LFTRYIP-IANNPHGCNMAP--DKKHLCVAGKLSPTVTVLDVTRFDA 311 (595)
T ss_dssp EEHHHHHHHHHHTCSEEETTEEEEECSGGGCC-SSEEEEE-EESSCCCEEECT--TSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred eeccceeEeccCCCeeEECcEEEEeCcccCCc-eeEEEEe-cCCCceEEEEcC--CCCEEEEeCCCCCeEEEEECccccc
Confidence 3455555431100 1011111 123567888888 888776665 588999999996320
Q ss_pred ----Cc----cc-cceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCC------ceeeeeeeeecCcccce-----E
Q 038537 216 ----GF----NH-GGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEG------GCYHECLAVLDGHRGPV-----R 275 (358)
Q Consensus 216 ----~~----~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~h~~~v-----~ 275 (358)
.. .. .....+..-.-++|+++|...++.-.|+.|.+||+... +...+.+..+..|..+- .
T Consensus 312 ~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~ 391 (595)
T 1fwx_A 312 VFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVM 391 (595)
T ss_dssp HHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETT
T ss_pred ccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceecc
Confidence 00 01 11122333344788888955556778999999998762 11124555555554321 2
Q ss_pred EEEeecccceeeeCeEEEEcc
Q 038537 276 CLAASLEMEKVVMGFLVYSSS 296 (358)
Q Consensus 276 ~i~~~~~~~~~~~~~~l~s~~ 296 (358)
++.++|+ |++|+++.
T Consensus 392 g~t~~~D------Gk~l~~~N 406 (595)
T 1fwx_A 392 GETLDAT------NDWLVCLS 406 (595)
T ss_dssp TTSTTCC------SSEEEEEE
T ss_pred ceEeCCC------CCEEEEcC
Confidence 2345677 67776654
No 235
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.02 E-value=9.1e-08 Score=87.26 Aligned_cols=253 Identities=11% Similarity=0.124 Sum_probs=144.5
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecc----cceE-EEEecCCEEEEEeC------CceEEEEecccccccccccccc-
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARH----GEVR-AILAHDNMLFTTNK------DCKIRIWNFTVSDNFRTKKVTT- 69 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~----~~v~-~i~~~~~~l~s~~~------dg~i~iw~~~~~~~~~~~~~~~- 69 (358)
|+.++.||.|..+|..+++.+..+.... ..+. +-...++.++++.. +|.|..+|..+++.+.......
T Consensus 120 v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~ 199 (668)
T 1kv9_A 120 VYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPG 199 (668)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC
T ss_pred EEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCC
Confidence 6778889999999999999887766431 1111 11123556666543 5899999999999887654321
Q ss_pred cCCCc---eee--e---ecCCC--ccccCCCceEEEEEeCCCCEEEEEecCC-------------------eEEEEEccC
Q 038537 70 LPRRS---SFL--S---FSKSN--TQQQHRDCVSCMAFYHAEGLLYTGSFDK-------------------TVKAWRVLD 120 (358)
Q Consensus 70 ~~~~~---~~~--~---~~~~~--~~~~h~~~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~ 120 (358)
.+... ..+ . +.... ...++......+++.|+...++.++.++ .|..+|..+
T Consensus 200 ~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t 279 (668)
T 1kv9_A 200 DPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT 279 (668)
T ss_dssp CTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT
T ss_pred CCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC
Confidence 11000 000 0 00000 0001222234578888888888887766 399999999
Q ss_pred Ccccccccccccc-------cCeEEEEEcCCCC---EEEEEeCCCcEEEEEceecCCcceeeee-------ecc-cCC--
Q 038537 121 KRCTCVDSFVAHE-------SNVNAIVVNQDDG---FVFTCSSDGSVKIWRRVYRENSHTLTMT-------LKF-QQS-- 180 (358)
Q Consensus 121 ~~~~~~~~~~~~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~~~-------~~~-~~~-- 180 (358)
++..-......|. .+.....+..+++ .++.++.+|.++++|..+++........ +.. ...
T Consensus 280 G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~ 359 (668)
T 1kv9_A 280 GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPV 359 (668)
T ss_dssp CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEE
T ss_pred CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcc
Confidence 8832222222222 2333333333564 6888999999999998877654221110 000 000
Q ss_pred ----------------------ceeEEEEeecCCCcEEEEe------------------------------------ecC
Q 038537 181 ----------------------SVNALALSSFFDNYFLYSG------------------------------------SSD 202 (358)
Q Consensus 181 ----------------------~i~~~~~~~~~~~~~l~~~------------------------------------~~d 202 (358)
.-..++++| +..+++.. ..+
T Consensus 360 ~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp--~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~ 437 (668)
T 1kv9_A 360 EAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP--GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVS 437 (668)
T ss_dssp ECTTTTCSSSCEEESSCTTCSSCSSCCEEET--TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCE
T ss_pred ccccccccCCeeEECCCCccccCCCcceECC--CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCcc
Confidence 001245565 44444431 124
Q ss_pred CcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCce
Q 038537 203 GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGC 259 (358)
Q Consensus 203 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 259 (358)
|.|..||+.+++....... +....-..+...+.+++.++.||.++.||..+++.
T Consensus 438 g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 438 GALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp EEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ceEEEEeCCCCcEEEEccC---CCCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 7789999888554333211 11111123445688999999999999999999954
No 236
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.99 E-value=1.3e-07 Score=80.47 Aligned_cols=228 Identities=11% Similarity=0.103 Sum_probs=136.1
Q ss_pred CCCcEEEEeCCCceeeeeeeec---------ccceEEEEecCCEEEEEeC--CceEEEEecccccccccccccccCCCce
Q 038537 7 SSTRIRVWRQPDCVERGFIKAR---------HGEVRAILAHDNMLFTTNK--DCKIRIWNFTVSDNFRTKKVTTLPRRSS 75 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~~h---------~~~v~~i~~~~~~l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~ 75 (358)
.++.|.++|..+.+.+..+... ...-..+++++++++++.. ++.|.+.|+.+.+.+.......
T Consensus 147 ~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g------ 220 (426)
T 3c75_H 147 RTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD------ 220 (426)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------
T ss_pred CCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC------
Confidence 4678999999999988877532 1122366778999988874 5789999999887665433210
Q ss_pred eeeecCCCccccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCccccc--ccccccccCe-EEEEEcCCCCEEEEE
Q 038537 76 FLSFSKSNTQQQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCV--DSFVAHESNV-NAIVVNQDDGFVFTC 151 (358)
Q Consensus 76 ~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~v-~~~~~~~~~~~l~~~ 151 (358)
+....|++ ..+++.+.||.+.+.+..+++.... ..+.....++ ..+.+.+++..++..
T Consensus 221 ------------------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~ 282 (426)
T 3c75_H 221 ------------------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWP 282 (426)
T ss_dssp ------------------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEE
T ss_pred ------------------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEE
Confidence 11222322 3445555666666666644331100 1111111121 234678888888777
Q ss_pred eCCCcEEEEEceecCCcceeeeee--------cccCCceeEEEEeecCCCcEEEEeec----------CCcEEEEEccCC
Q 038537 152 SSDGSVKIWRRVYRENSHTLTMTL--------KFQQSSVNALALSSFFDNYFLYSGSS----------DGSINFWEKDKM 213 (358)
Q Consensus 152 ~~dg~i~~wd~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~ 213 (358)
...+.+.+.|+............. .........+++++ ++..+++... ++.|.++|..+.
T Consensus 283 s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~--dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~ 360 (426)
T 3c75_H 283 TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHR--QSDRIYLLVDQRDEWKHKAASRFVVVLNAETG 360 (426)
T ss_dssp BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEG--GGTEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcC--CCCEEEEEecccccccccCCCCEEEEEECCCC
Confidence 888999999985432110000000 00112233478888 7776666542 357999999884
Q ss_pred cCCccccceeecccceeEEEeeeCC-EEEEee-CCCeEEEEEcCCCceeeeeeeee
Q 038537 214 SGGFNHGGFLQGHCFAVLCLVAIEK-LIFSGS-EDTTIRVWRRAEGGCYHECLAVL 267 (358)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~ 267 (358)
+..... ..+....-+.++++++ ++++.. .++.|.++|+.+. +.+..+
T Consensus 361 kvv~~I---~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~----kvv~tI 409 (426)
T 3c75_H 361 ERINKI---ELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATG----EELRSV 409 (426)
T ss_dssp CEEEEE---EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC----CEEEEE
T ss_pred eEEEEE---ECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC----CEEEEe
Confidence 322221 1223344467889998 888877 5999999999998 445554
No 237
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.96 E-value=6.4e-06 Score=66.12 Aligned_cols=237 Identities=10% Similarity=0.079 Sum_probs=136.3
Q ss_pred CcEEEEeCCCceee-----eeeeecccceEEEEec--CCEEE-EEeCCceEEEEecccccccccccccccCCCceeeeec
Q 038537 9 TRIRVWRQPDCVER-----GFIKARHGEVRAILAH--DNMLF-TTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFS 80 (358)
Q Consensus 9 g~v~vw~~~~~~~~-----~~~~~h~~~v~~i~~~--~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
+.|+.+++...... ..+.........+.++ ++.|+ +-..++.|..++.+.......
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~---------------- 73 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI---------------- 73 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE----------------
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE----------------
Confidence 47888888654321 1222223345566664 44554 445678999999875432110
Q ss_pred CCCccccCCCceEEEEEeCCCCEEEEE-ecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC---CCc
Q 038537 81 KSNTQQQHRDCVSCMAFYHAEGLLYTG-SFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS---DGS 156 (358)
Q Consensus 81 ~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~ 156 (358)
..........+++++++..|+.+ ...+.|.++++.......+ ..........++++|++..|..+.. .+.
T Consensus 74 ----~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~ 147 (267)
T 1npe_A 74 ----IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPK 147 (267)
T ss_dssp ----ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCE
T ss_pred ----EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE--EECCCCCccEEEEeeCCCEEEEEECCCCCcE
Confidence 01112357899999976555544 5567899999875431111 1112245789999997666655554 367
Q ss_pred EEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEE-EEeecCCcEEEEEccCCcCCccccceeecccceeEEEee
Q 038537 157 VKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFL-YSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVA 235 (358)
Q Consensus 157 i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (358)
|..+++.... ...+ ..........+++++ ++..| ++-...+.|..+|+..... ...... ......+..
T Consensus 148 I~~~~~dg~~-~~~~---~~~~~~~P~gia~d~--~~~~lyv~d~~~~~I~~~~~~g~~~----~~~~~~-~~~P~gi~~ 216 (267)
T 1npe_A 148 IETSHMDGTN-RRIL---AQDNLGLPNGLTFDA--FSSQLCWVDAGTHRAECLNPAQPGR----RKVLEG-LQYPFAVTS 216 (267)
T ss_dssp EEEEETTSCC-CEEE---ECTTCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTEEEE----EEEEEC-CCSEEEEEE
T ss_pred EEEEecCCCC-cEEE---EECCCCCCcEEEEcC--CCCEEEEEECCCCEEEEEecCCCce----EEEecC-CCCceEEEE
Confidence 8888764221 1111 111234578899987 65555 4555568899999875221 111111 112234455
Q ss_pred eCCEEEEee-CCCeEEEEEcCCCceeeeeeeeecCcc-cceEEEEeecc
Q 038537 236 IEKLIFSGS-EDTTIRVWRRAEGGCYHECLAVLDGHR-GPVRCLAASLE 282 (358)
Q Consensus 236 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~-~~v~~i~~~~~ 282 (358)
++..|+.+. .++.|..+|..++ +.+..+.... ....+|++.|+
T Consensus 217 d~~~lyva~~~~~~v~~~d~~~g----~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 217 YGKNLYYTDWKTNSVIAMDLAIS----KEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp ETTEEEEEETTTTEEEEEETTTT----EEEEEECCSSCCCCCCEEEECS
T ss_pred eCCEEEEEECCCCeEEEEeCCCC----CceEEEccccccccceeeecCc
Confidence 666555554 5689999999988 4455554332 24677888877
No 238
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.95 E-value=3.8e-07 Score=81.49 Aligned_cols=254 Identities=9% Similarity=0.008 Sum_probs=137.8
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecc--c--ceE-EEEecCCEEEEEeC------CceEEEEeccccccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARH--G--EVR-AILAHDNMLFTTNK------DCKIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~--~--~v~-~i~~~~~~l~s~~~------dg~i~iw~~~~~~~~~~~~~~~~ 70 (358)
|+.++.|+.|..+|..+++.+....... . .+. +-...++.+++++. +|.|..+|..+++.+........
T Consensus 118 v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~ 197 (571)
T 2ad6_A 118 IVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGS 197 (571)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred EEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCC
Confidence 5677889999999999999887655322 0 121 11123556666654 79999999999988765443211
Q ss_pred CCC---------cee---------eeecCCCccccCCCceEEEEEeCCCCEEEEEecC----------------CeEEEE
Q 038537 71 PRR---------SSF---------LSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD----------------KTVKAW 116 (358)
Q Consensus 71 ~~~---------~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----------------g~i~iw 116 (358)
... ... ..+.......+.......+++.++...++.++.+ +.|..+
T Consensus 198 ~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Al 277 (571)
T 2ad6_A 198 DDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGR 277 (571)
T ss_dssp HHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEE
T ss_pred ccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEE
Confidence 000 000 0000000000001111235666766666665532 368999
Q ss_pred EccCCccccccccccc--------ccCeEEEEEcCCCC---EEEEEeCCCcEEEEEceecCCcceeeeeec---------
Q 038537 117 RVLDKRCTCVDSFVAH--------ESNVNAIVVNQDDG---FVFTCSSDGSVKIWRRVYRENSHTLTMTLK--------- 176 (358)
Q Consensus 117 d~~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--------- 176 (358)
|.++++..-......| ..++. +....+++ .++.++.+|.++++|..+++..........
T Consensus 278 d~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~ 356 (571)
T 2ad6_A 278 DLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL 356 (571)
T ss_dssp ETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred ecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc
Confidence 9998873222222222 12222 22224663 577888899999999877765443321100
Q ss_pred ccCCce--------------------------eEEEEeecCCCcEEEEee------------------------------
Q 038537 177 FQQSSV--------------------------NALALSSFFDNYFLYSGS------------------------------ 200 (358)
Q Consensus 177 ~~~~~i--------------------------~~~~~~~~~~~~~l~~~~------------------------------ 200 (358)
....++ ..++++| +..++++..
T Consensus 357 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp--~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 434 (571)
T 2ad6_A 357 KTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDP--ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPG 434 (571)
T ss_dssp TTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET--TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred cCCceecccccCCCCCCCceEECCCCccccCCCCceECC--CCCEEEEEchhccccccccccccccCCccccccceeccC
Confidence 000000 2345665 555655543
Q ss_pred -------cCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceee
Q 038537 201 -------SDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYH 261 (358)
Q Consensus 201 -------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 261 (358)
.+|.|..||+.+++...+... +.......+...+..++.++.||.|+.+|.++++..+
T Consensus 435 ~~~~~~~~~g~l~a~D~~tG~~~W~~~~---~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 435 PNGPTKKEMGQIRAFDLTTGKAKWTKWE---KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp TTSTTSCCCEEEEEECTTTCCEEEEEEE---SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccCCCCCCeEEEEECCCCCEEEEecC---CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence 347788888887543333211 1111111223346778889999999999999996433
No 239
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.90 E-value=2.7e-07 Score=82.48 Aligned_cols=191 Identities=7% Similarity=-0.052 Sum_probs=111.8
Q ss_pred EEeeeC-CCcEEEEeC-CCceeeeeeeeccc-c----------eEEEEecCCEEEEEeCCceEEEEeccccccccccccc
Q 038537 2 VFTGSS-STRIRVWRQ-PDCVERGFIKARHG-E----------VRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVT 68 (358)
Q Consensus 2 l~tg~~-dg~v~vw~~-~~~~~~~~~~~h~~-~----------v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 68 (358)
|++++. ++.|.-+|. .+++.+..+..... . ...+...++.++.++.|+.|..+|..+++.+......
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~ 144 (571)
T 2ad6_A 65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWEVEVC 144 (571)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred EEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCCCEEEEEECCCCCEEEEecCC
Confidence 456666 889999999 89998776643321 0 1123456788899999999999999999887654432
Q ss_pred ccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec------CCeEEEEEccCCcccccccccccc---------
Q 038537 69 TLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF------DKTVKAWRVLDKRCTCVDSFVAHE--------- 133 (358)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~--------- 133 (358)
.... .......++ .. ++ .++.++. ++.|..+|..+++. +-.+....
T Consensus 145 ~~~~-----------~~~~~~~P~----v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~--~W~~~~~~~~~~~~~~p 205 (571)
T 2ad6_A 145 DPKV-----------GSTLTQAPF----VA-KD-TVLMGCSGAELGVRGAVNAFDLKTGEL--KWRAFATGSDDSVRLAK 205 (571)
T ss_dssp CGGG-----------TCBCCSCCE----EE-TT-EEEEECBCGGGTCCCEEEEEETTTCCE--EEEEESSSCHHHHTBCT
T ss_pred CCCc-----------cceeccCCE----EE-CC-EEEEEecCCccCCCCEEEEEECCCCcE--EEEEccCCCccccccCc
Confidence 1100 000011111 11 33 4555544 78999999988772 22111100
Q ss_pred ----------------------------c-CeEEEEEcCCCCEEEEEeCC----------------CcEEEEEceecCCc
Q 038537 134 ----------------------------S-NVNAIVVNQDDGFVFTCSSD----------------GSVKIWRRVYRENS 168 (358)
Q Consensus 134 ----------------------------~-~v~~~~~~~~~~~l~~~~~d----------------g~i~~wd~~~~~~~ 168 (358)
. ....+++.++...++.++.+ +.|..+|..+++..
T Consensus 206 ~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~ 285 (571)
T 2ad6_A 206 DFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAK 285 (571)
T ss_dssp TTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEE
T ss_pred ccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEE
Confidence 0 01235677776777776642 25889999887765
Q ss_pred ceeeeeec------ccCCceeEEEEeecCCC---cEEEEeecCCcEEEEEccCCc
Q 038537 169 HTLTMTLK------FQQSSVNALALSSFFDN---YFLYSGSSDGSINFWEKDKMS 214 (358)
Q Consensus 169 ~~~~~~~~------~~~~~i~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~ 214 (358)
+....... ....++ -+.... ++ ..++.++.+|.++++|..+++
T Consensus 286 W~~~~~~~d~~d~~~~~~p~-l~~~~~--~G~~~~~v~~~~~~G~l~~lD~~tG~ 337 (571)
T 2ad6_A 286 WGYQKTPHDEWDFAGVNQMV-LTDQPV--NGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp EEEESSTTCSSCCCCCCCCE-EEEEEE--TTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred EEecCCCCcccccccCCCCE-EEeccc--CCcEEEEEEEeCCCcEEEEEECCCCC
Confidence 54432110 011111 122222 56 357788889999999988754
No 240
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.90 E-value=2e-07 Score=85.05 Aligned_cols=256 Identities=9% Similarity=0.034 Sum_probs=133.8
Q ss_pred cEEEEeCCCceeee--eeee-cccceE--EEEecCCEEEEEeC-CceEEEEecccccccccccccccCCCceeeeecCCC
Q 038537 10 RIRVWRQPDCVERG--FIKA-RHGEVR--AILAHDNMLFTTNK-DCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSN 83 (358)
Q Consensus 10 ~v~vw~~~~~~~~~--~~~~-h~~~v~--~i~~~~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
.+.+||..+++... .+.. +..... ++..++.+++.|+. ++.+.+||..+.+-..... .
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~---~------------- 283 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPD---M------------- 283 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCC---C-------------
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCC---C-------------
Confidence 57889987765332 2222 222232 33457888888884 5589999987654221110 0
Q ss_pred ccccCCCceEEEEEeCCCCEEEEEe-cC-----CeEEEEEccCCcccccc-----cccccccCeEEEEEcCCCCEEEEEe
Q 038537 84 TQQQHRDCVSCMAFYHAEGLLYTGS-FD-----KTVKAWRVLDKRCTCVD-----SFVAHESNVNAIVVNQDDGFVFTCS 152 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~~~l~~~~-~d-----g~i~iwd~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~ 152 (358)
.. ...-.+++..+++++++.|+ .+ ..+.+||..+.++..+. .+..... ...+..++..++.++
T Consensus 284 --~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~---~~~~~~~~~iyv~Gg 357 (656)
T 1k3i_A 284 --QV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADK---QGLYRSDNHAWLFGW 357 (656)
T ss_dssp --SS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCT---TGGGTTTCSCCEEEC
T ss_pred --Cc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccc---cceeecCCceEEEEC
Confidence 11 11113445567899999988 44 56999999888765431 1111100 011223455555555
Q ss_pred CCC---------cEEEEEceecCCcceeeeeecc------cCCceeEEEEeecCCCcEEEEeecCC-----------cEE
Q 038537 153 SDG---------SVKIWRRVYRENSHTLTMTLKF------QQSSVNALALSSFFDNYFLYSGSSDG-----------SIN 206 (358)
Q Consensus 153 ~dg---------~i~~wd~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~l~~~~~dg-----------~i~ 206 (358)
.+| .+..||..+....... ..... ....-.++.+.. .++.+++.|+.++ .+.
T Consensus 358 ~~g~~~~~~~~~~v~~yd~~~~~w~~~~-~~~~~~~~~~~~~~~~~av~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~v~ 435 (656)
T 1k3i_A 358 KKGSVFQAGPSTAMNWYYTSGSGDVKSA-GKRQSNRGVAPDAMCGNAVMYDA-VKGKILTFGGSPDYQDSDATTNAHIIT 435 (656)
T ss_dssp GGGCEEECCSSSEEEEEECSTTCEEEEE-EECEETTEECCCCBTCEEEEEET-TTTEEEEECCBSSSSSSBCCCCEEEEE
T ss_pred CCCcEEEecCccceeeeecCCcceeecC-CccccccccCCCCCCCceEeccC-CCCeEEEEeCCCCCCCCCcCCcceEEE
Confidence 444 4567777544311111 11110 011122333322 3678888887543 577
Q ss_pred EEEccCCcCCccccceee-cccceeEEEeeeCCEEEEeeCC-----------CeEEEEEcCCCceeeeeeeeecCcccce
Q 038537 207 FWEKDKMSGGFNHGGFLQ-GHCFAVLCLVAIEKLIFSGSED-----------TTIRVWRRAEGGCYHECLAVLDGHRGPV 274 (358)
Q Consensus 207 i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~h~~~v 274 (358)
+||..+..-.......+. .......++.+++++++.|+.+ ..+.+||..+.+. ..+..+.......
T Consensus 436 ~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W--~~~~~~~~~R~~h 513 (656)
T 1k3i_A 436 LGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF--YKQNPNSIVRVYH 513 (656)
T ss_dssp CCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE--EECCCCSSCCCTT
T ss_pred cCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce--eecCCCCCccccc
Confidence 787765321111000111 1112223445689999999854 4689999987643 3333332222233
Q ss_pred EEEEeecccceeeeCeEEEEccC
Q 038537 275 RCLAASLEMEKVVMGFLVYSSSL 297 (358)
Q Consensus 275 ~~i~~~~~~~~~~~~~~l~s~~~ 297 (358)
....+.|+ +++++.||.
T Consensus 514 s~a~ll~d------g~v~v~GG~ 530 (656)
T 1k3i_A 514 SISLLLPD------GRVFNGGGG 530 (656)
T ss_dssp EEEEECTT------SCEEEEECC
T ss_pred cHhhcCCC------cEEEecCCC
Confidence 34456677 889999885
No 241
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.90 E-value=1.1e-06 Score=74.38 Aligned_cols=232 Identities=10% Similarity=0.055 Sum_probs=133.3
Q ss_pred cCCEE-EEEeCCceEEEEecccccc-cccccccccCCCceeeeecCCCcccc-CCCceEEEEEeCCCCEEEEEecC----
Q 038537 38 HDNML-FTTNKDCKIRIWNFTVSDN-FRTKKVTTLPRRSSFLSFSKSNTQQQ-HRDCVSCMAFYHAEGLLYTGSFD---- 110 (358)
Q Consensus 38 ~~~~l-~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~d---- 110 (358)
+.++| +.+..++.|.++|+.+... .+..+... +...... -...-..+..+|+| +++++..+
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie-----------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~ 161 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIE-----------PEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGE 161 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEEC-----------HHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSC
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeec-----------hhhcccccCCCcccceeECCCe-EEEEcCCCcCCC
Confidence 34554 5566788999999865421 11100000 0000000 11134667888999 66666555
Q ss_pred --CeEEEEEccCCccccccccccc--c-cCeEEEEEcCCCCEEEEEe-------------------CCCcEEEEEceecC
Q 038537 111 --KTVKAWRVLDKRCTCVDSFVAH--E-SNVNAIVVNQDDGFVFTCS-------------------SDGSVKIWRRVYRE 166 (358)
Q Consensus 111 --g~i~iwd~~~~~~~~~~~~~~~--~-~~v~~~~~~~~~~~l~~~~-------------------~dg~i~~wd~~~~~ 166 (358)
|.|.++|..+.+ .+..+... . .--..+.|+|+++.+++.. .+.+|.+||+.+++
T Consensus 162 ~~g~v~vlD~~T~~--v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 162 GPGGILMLDHYSFE--PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp SCCEEEEECTTTCC--EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred CCCeEEEEECCCCe--EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 789999999887 45554321 1 2234588899999888874 36899999997543
Q ss_pred Ccceeeeeecc--cCCceeEEEEeecCCCcEEEEee------cCCcEEEEEccCCcCCccccc-----------eee---
Q 038537 167 NSHTLTMTLKF--QQSSVNALALSSFFDNYFLYSGS------SDGSINFWEKDKMSGGFNHGG-----------FLQ--- 224 (358)
Q Consensus 167 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-----------~~~--- 224 (358)
. ...+.. .......+.|..+++++++++++ .+++|.+|....+. ..... .+.
T Consensus 240 ~----~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~--~~~~~vIdi~~~~v~~~lp~~~ 313 (462)
T 2ece_A 240 R----IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK--WNAEKVIEIPAEPLEGNLPEIL 313 (462)
T ss_dssp E----EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE--EEEEEEEEECCEECCSSCCGGG
T ss_pred E----eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc--eeEEEEEeCCCccccccccccc
Confidence 2 222222 12344566663333888877776 45678766554311 11000 000
Q ss_pred ------cccceeEEEeeeCCEEEEee-CCCeEEEEEcCCCceeeeeeeeecCc-----------c---cceEEEEeeccc
Q 038537 225 ------GHCFAVLCLVAIEKLIFSGS-EDTTIRVWRRAEGGCYHECLAVLDGH-----------R---GPVRCLAASLEM 283 (358)
Q Consensus 225 ------~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h-----------~---~~v~~i~~~~~~ 283 (358)
+....-..+++++++|+++. ..+.|.+||+..... .+.+..+... . +.-..++++|+
T Consensus 314 ~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~-~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD- 391 (462)
T 2ece_A 314 KPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFK-PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD- 391 (462)
T ss_dssp GGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTS-CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT-
T ss_pred cccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCC-cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC-
Confidence 11223366899999888776 568999999863321 1333333221 0 12478999999
Q ss_pred ceeeeCeEEEEcc
Q 038537 284 EKVVMGFLVYSSS 296 (358)
Q Consensus 284 ~~~~~~~~l~s~~ 296 (358)
|++|+++.
T Consensus 392 -----Gk~LyVaN 399 (462)
T 2ece_A 392 -----GRRVYVTN 399 (462)
T ss_dssp -----SSEEEEEC
T ss_pred -----CCEEEEEc
Confidence 77777776
No 242
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.87 E-value=6.3e-08 Score=81.05 Aligned_cols=209 Identities=9% Similarity=0.021 Sum_probs=122.7
Q ss_pred CceEEEEEeCCCCEEEEEec--CCeEEEEEccCCccccc----ccccccccCeEEEEEcCCCCEEEEEeC-----CCcEE
Q 038537 90 DCVSCMAFYHAEGLLYTGSF--DKTVKAWRVLDKRCTCV----DSFVAHESNVNAIVVNQDDGFVFTCSS-----DGSVK 158 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~ 158 (358)
..+..++++|+|+.+++... ++.++||.+.+++.... .....+-..+..++++++++++++-.. ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 56899999999998888642 34355666554442111 111234567999999999886665543 57899
Q ss_pred EEEceecCCcceeeee--ecccCCceeEEEEeecCCC-cEEEEee---cCCcEEEEEccCCcCCccccc-----------
Q 038537 159 IWRRVYRENSHTLTMT--LKFQQSSVNALALSSFFDN-YFLYSGS---SDGSINFWEKDKMSGGFNHGG----------- 221 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~-~~l~~~~---~dg~i~i~d~~~~~~~~~~~~----------- 221 (358)
+||+.+++....+... ...+...+..+++++ ++ ..+++.. .++.|.+||+.+.........
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~--~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDL--IHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEETTTTEEEEEEECCTTTSCTTCCCCEEEEET--TTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEECCCCeEEEEEECChhhcccccccceEEEec--CCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 9998655422222110 011234568899986 44 4445544 678999999875321110000
Q ss_pred eeec----------------ccceeEEEeeeCCEEEEeeCCC-eEEEEEcC---CCcee-eeeee--eecCcccceEEEE
Q 038537 222 FLQG----------------HCFAVLCLVAIEKLIFSGSEDT-TIRVWRRA---EGGCY-HECLA--VLDGHRGPVRCLA 278 (358)
Q Consensus 222 ~~~~----------------~~~~~~~~~~~~~~l~~~~~dg-~i~iwd~~---~~~~~-~~~~~--~~~~h~~~v~~i~ 278 (358)
...+ ....-++++++++.|+.+..++ .++.++.. .+... .+... ...++.+....++
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia 254 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGIS 254 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEE
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEE
Confidence 0000 0112266778888888777665 45555432 11000 00000 1113344567899
Q ss_pred eecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 279 ASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 279 ~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
++++ |.++++...++.|.+||.
T Consensus 255 ~d~~------G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 255 IDKD------HNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp ECTT------CCEEEEEGGGTEEEEEET
T ss_pred ECCC------CCEEEEccCCCeEEEEEC
Confidence 9998 889999999999999998
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.85 E-value=3e-06 Score=67.16 Aligned_cols=200 Identities=11% Similarity=0.034 Sum_probs=120.4
Q ss_pred ceEEEEEeCCCCEEEEEec--CCeEEEEEccCCcccccccccc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCC
Q 038537 91 CVSCMAFYHAEGLLYTGSF--DKTVKAWRVLDKRCTCVDSFVA-HESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYREN 167 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 167 (358)
....+.|++++.+.++.+. ++.|+++|+.+++ .+..+.- .......+++.. +...++.-.++.+.++|..+.+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~--v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGK--VENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCC--EEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCC--EEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcE
Confidence 3578999998754454443 5799999999988 4444321 112233556652 33444445688999999865544
Q ss_pred cceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccc-eeEEEee-eCCEEEEeeC
Q 038537 168 SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCF-AVLCLVA-IEKLIFSGSE 245 (358)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~~~~ 245 (358)
...+.. ... ....+++ ++..++++..++.|.++|..+.+......-...+... ....+.+ ++...+....
T Consensus 99 ~~~i~~----g~~--~g~glt~--Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~ 170 (266)
T 2iwa_A 99 IKNFTH----QMK--DGWGLAT--DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIWQ 170 (266)
T ss_dssp EEEEEC----CSS--SCCEEEE--CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred EEEEEC----CCC--CeEEEEE--CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecCC
Confidence 333321 111 1233555 6666666667899999998873322211110101110 1222222 4544444446
Q ss_pred CCeEEEEEcCCCceeeeeeeeecCc-------------ccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 246 DTTIRVWRRAEGGCYHECLAVLDGH-------------RGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~~~~h-------------~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
++.|.+.|..+++. +..+.-. ....+.|+|+|++ .++++++...+.|.+-++...+
T Consensus 171 ~~~V~vID~~tg~V----~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~-----~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 171 TDCIARISAKDGTL----LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQEN-----KRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp SSEEEEEETTTCCE----EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTT-----TEEEEEETTCSEEEEEEEEECC
T ss_pred CCeEEEEECCCCcE----EEEEECCCcccccccccccccCceEEEEEcCCC-----CEEEEECCCCCeEEEEEEeccc
Confidence 78999999999854 3333211 1356899999984 3688888899999999998653
No 244
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.84 E-value=3.1e-07 Score=76.91 Aligned_cols=231 Identities=9% Similarity=0.025 Sum_probs=136.1
Q ss_pred CCCcEEEEeCCCceeeeeeeec---------ccceEEEEecCCEEEEEeC--CceEEE--EecccccccccccccccCCC
Q 038537 7 SSTRIRVWRQPDCVERGFIKAR---------HGEVRAILAHDNMLFTTNK--DCKIRI--WNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~~h---------~~~v~~i~~~~~~l~s~~~--dg~i~i--w~~~~~~~~~~~~~~~~~~~ 73 (358)
.++.|.+||..+++.+..+..+ ...-..+++++++++++.. +..+.+ +|..+ +.....
T Consensus 94 ~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v------ 164 (368)
T 1mda_H 94 RTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS------ 164 (368)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC------
T ss_pred CCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC------
Confidence 4688999999999999888654 2334567778999888864 467888 88876 111110
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccC-----Cccccc--ccccccccCeEEEEEcCCC
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLD-----KRCTCV--DSFVAHESNVNAIVVNQDD 145 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-----~~~~~~--~~~~~~~~~v~~~~~~~~~ 145 (358)
. + |..+.|++ ..+++.+.||.+.+.++.+ ++.... ..+.....+. . .+++
T Consensus 165 ------------~---~---~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~ 222 (368)
T 1mda_H 165 ------------A---S---CFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYP 222 (368)
T ss_dssp ------------S---S---CCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTT
T ss_pred ------------C---C---ceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccC
Confidence 0 0 01223433 2445556778888888876 331100 1121223343 3 5666
Q ss_pred CEEEEEeCCCcEEEEEceecCCcceeeeeec----------ccCCceeEEEEeecCCCcEEEEeec-C--------CcEE
Q 038537 146 GFVFTCSSDGSVKIWRRVYRENSHTLTMTLK----------FQQSSVNALALSSFFDNYFLYSGSS-D--------GSIN 206 (358)
Q Consensus 146 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~l~~~~~-d--------g~i~ 206 (358)
..++..+. +.+.+.|+...... ...... ........++++| +++.++++.. . +.+.
T Consensus 223 ~~~~~vs~-~~V~viD~~~~~~~--v~~~~~~~~~~~~~~~~~p~g~~~v~~s~--dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 223 GMLVWAVA-SSILQGDIPAAGAT--MKAAIDGNESGRKADNFRSAGFQMVAKLK--NTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp TEEEECBS-SCCEEEECCSSCCE--EECCCCSSCTHHHHTTEEECSSSCEEEET--TTTEEEEEEEECSSCTTSCEEEEE
T ss_pred CEEEEEcC-CEEEEEECCCCcce--EEEEEEeccccccccccccCcceeeEEcC--CCCEEEEEeccccCcccccCCCEE
Confidence 66666666 99999998543211 111110 0112223367887 8777776543 2 3566
Q ss_pred EEEccCCcCCccccceeecccceeEEEeeeCC-EEEEee-CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeec
Q 038537 207 FWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEK-LIFSGS-EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASL 281 (358)
Q Consensus 207 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~ 281 (358)
++|+.+.+..... ..+....-+.++++++ ++++.. .++.|.++|+.+. +.+..+.....+ ..+++.+
T Consensus 298 ViD~~t~~vv~~i---~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~----kvv~~I~vg~~P-~~i~~~~ 366 (368)
T 1mda_H 298 SVTASVGQTSGPI---SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD----QDQSSVELDKGP-ESLSVQN 366 (368)
T ss_dssp EEESSSCCEEECC---EEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC----EEEEECCCCSCC-CEEECCC
T ss_pred EEECCCCeEEEEE---ECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCC----cEEEEEECCCCC-CEEEeec
Confidence 9999884432222 1222334467788887 566666 5999999999998 566666654433 4555554
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.84 E-value=2.7e-05 Score=72.86 Aligned_cols=277 Identities=9% Similarity=0.165 Sum_probs=157.2
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeee-------cccceEEEEec-CCEEEEEeCCceEEEEecccccccccccccccCCC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKA-------RHGEVRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~-------h~~~v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
|..|+.++-|.+||..+++....... ....|.++..+ .+.|..|+.+ -|.+|+..+...........
T Consensus 228 lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~---- 302 (795)
T 4a2l_A 228 IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPV---- 302 (795)
T ss_dssp EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTT----
T ss_pred EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCC----
Confidence 34455554588899877654433222 13568888775 4566667666 58888876554321110000
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccc----ccccCeEEEEEcCCCCEEE
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFV----AHESNVNAIVVNQDDGFVF 149 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~ 149 (358)
....-....|.++...++|. |..|+.++-|..++..+.......... -....|.++...+++.+.
T Consensus 303 ---------~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW- 371 (795)
T 4a2l_A 303 ---------ENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW- 371 (795)
T ss_dssp ---------STTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-
T ss_pred ---------CCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-
Confidence 00012345699999988876 666777777999987665422211110 124569999998887744
Q ss_pred EEeCCCcEEEEEceecCCcceeeeee-----cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceee
Q 038537 150 TCSSDGSVKIWRRVYRENSHTLTMTL-----KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ 224 (358)
Q Consensus 150 ~~~~dg~i~~wd~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 224 (358)
.|+.++-|..||..++.-. ...... ......|.++...+ ++..|..|+.++-|..||..+............
T Consensus 372 iGt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~--~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~ 448 (795)
T 4a2l_A 372 IGTNDGGLNLYNPITQRFT-SYTLQEDESARGIGSNNIKAVYVDE--KKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQ 448 (795)
T ss_dssp EEESSSCEEEECTTTCCEE-EECCC------CCSCSCEEEEEEET--TTTEEEEEETTTEEEEEETTTCCEEEECTTTSC
T ss_pred EEECCCCeEEEcCCCCcEE-EEecCCCCcccCCCCccEEEEEEcC--CCCEEEEEeCcCceeEEeCCCCcEEEeecCCCC
Confidence 5677777999987543211 111000 01235688888775 676577787777799999876321110000000
Q ss_pred cccceeEEEeee-CCEEEEeeCCCeEEEEEcCCCceeeeeeeee----cCcccceEEEEeecccceeeeCeEEEEccCCC
Q 038537 225 GHCFAVLCLVAI-EKLIFSGSEDTTIRVWRRAEGGCYHECLAVL----DGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQ 299 (358)
Q Consensus 225 ~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg 299 (358)
.....+.++..+ ...|..|+.+| |.+||..+++. ...... .-....|.++...++ +.+.+... +
T Consensus 449 l~~~~v~~i~~d~~g~lwigt~~G-l~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~i~~d~~------g~lWigt~-~- 517 (795)
T 4a2l_A 449 LVNENVYAILPDGEGNLWLGTLSA-LVRFNPEQRSF--TTIEKEKDGTPVVSKQITTLFRDSH------KRLWIGGE-E- 517 (795)
T ss_dssp CSCSCEEEEEECSSSCEEEEESSC-EEEEETTTTEE--EECCBCTTCCBCCCCCEEEEEECTT------CCEEEEES-S-
T ss_pred cCCCeeEEEEECCCCCEEEEecCc-eeEEeCCCCeE--EEccccccccccCCceEEEEEECCC------CCEEEEeC-C-
Confidence 123356666554 23455555554 88899887632 111111 112357899988887 65555443 4
Q ss_pred cEEEEEeee
Q 038537 300 TFKVWRVKV 308 (358)
Q Consensus 300 ~v~iw~~~~ 308 (358)
-|..||...
T Consensus 518 Gl~~~~~~~ 526 (795)
T 4a2l_A 518 GLSVFKQEG 526 (795)
T ss_dssp CEEEEEEET
T ss_pred ceEEEeCCC
Confidence 577787753
No 246
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.83 E-value=1.8e-06 Score=77.27 Aligned_cols=167 Identities=7% Similarity=-0.004 Sum_probs=95.3
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeeccc----ceEE-EEecCCEEEEEe------CCceEEEEeccccccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHG----EVRA-ILAHDNMLFTTN------KDCKIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~----~v~~-i~~~~~~l~s~~------~dg~i~iw~~~~~~~~~~~~~~~~ 70 (358)
|+.++.|+.|..+|..+++.+........ .+.+ -...++.+++++ .+|.|+.+|..+++.+........
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~ 203 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP 203 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence 67888899999999999998766543221 1211 112345566655 389999999999988765443211
Q ss_pred CCCc------------------eeeeecCCCccccCCCce-EEEEEeCCCCEEEEEecC----------------CeEEE
Q 038537 71 PRRS------------------SFLSFSKSNTQQQHRDCV-SCMAFYHAEGLLYTGSFD----------------KTVKA 115 (358)
Q Consensus 71 ~~~~------------------~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~l~~~~~d----------------g~i~i 115 (358)
.... ....+.. ..+..-...+ ..+++.+...+++.+..+ +.|..
T Consensus 204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g-~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~A 282 (599)
T 1w6s_A 204 DKDLLLASDFNIKNPHYGQKGLGTGTWEG-DAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG 282 (599)
T ss_dssp HHHHTBCTTTTTTCGGGCCTTHHHHTSST-TGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred ccccccccccccccccccccccccccCCC-cceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEE
Confidence 0000 0000000 0000001111 245666777777777654 47999
Q ss_pred EEccCCcccccccccccc--------cCeEEEEEc-CCC---CEEEEEeCCCcEEEEEceecCCcce
Q 038537 116 WRVLDKRCTCVDSFVAHE--------SNVNAIVVN-QDD---GFVFTCSSDGSVKIWRRVYRENSHT 170 (358)
Q Consensus 116 wd~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~---~~l~~~~~dg~i~~wd~~~~~~~~~ 170 (358)
+|.++++..-......|. .++. +... .++ ..++.++.+|.+.++|.++++....
T Consensus 283 ld~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 283 RDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp EETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 999998832222222222 2222 2222 456 4677788999999999987765443
No 247
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.81 E-value=9.5e-07 Score=78.98 Aligned_cols=193 Identities=10% Similarity=0.026 Sum_probs=112.3
Q ss_pred EEeeeC-CCcEEEEeC-CCceeeeeeeecccc-----------eEEEEe--cCCE----EEEEeCCceEEEEeccccccc
Q 038537 2 VFTGSS-STRIRVWRQ-PDCVERGFIKARHGE-----------VRAILA--HDNM----LFTTNKDCKIRIWNFTVSDNF 62 (358)
Q Consensus 2 l~tg~~-dg~v~vw~~-~~~~~~~~~~~h~~~-----------v~~i~~--~~~~----l~s~~~dg~i~iw~~~~~~~~ 62 (358)
|++++. ++.|.-+|. .+++.+-.+...... ...+.. .++. |+.++.|+.|..+|..+++.+
T Consensus 65 vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~ 144 (599)
T 1w6s_A 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV 144 (599)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEE
Confidence 456666 889999999 899988766543211 112333 5555 888999999999999999887
Q ss_pred ccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe------cCCeEEEEEccCCcccccccccccc---
Q 038537 63 RTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS------FDKTVKAWRVLDKRCTCVDSFVAHE--- 133 (358)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~--- 133 (358)
.......... .......++ +. ++ .+++++ .+|.|+-+|..+++. +-.+....
T Consensus 145 W~~~~~~~~~-----------~~~~~ssP~----v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~--~W~~~~~~~~~ 205 (599)
T 1w6s_A 145 WKVENSDIKV-----------GSTLTIAPY----VV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQ--VWRAYATGPDK 205 (599)
T ss_dssp EEEECCCGGG-----------TCBCCSCCE----EE-TT-EEEECCBCGGGTCCCEEEEEETTTCCE--EEEEESSSCHH
T ss_pred EeecCCCCCc-----------cceeecCCE----EE-CC-EEEEEecccccCCCCeEEEEECCCCcE--EEEEcCCCCcc
Confidence 6644321100 000001111 11 34 455554 378999999988872 21111100
Q ss_pred ----------------------------------cCe-EEEEEcCCCCEEEEEeCCC----------------cEEEEEc
Q 038537 134 ----------------------------------SNV-NAIVVNQDDGFVFTCSSDG----------------SVKIWRR 162 (358)
Q Consensus 134 ----------------------------------~~v-~~~~~~~~~~~l~~~~~dg----------------~i~~wd~ 162 (358)
..+ ..+++.+....++.++.++ .|..+|.
T Consensus 206 ~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~ 285 (599)
T 1w6s_A 206 DLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDA 285 (599)
T ss_dssp HHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEET
T ss_pred ccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeC
Confidence 001 1356677778888877653 7888999
Q ss_pred eecCCcceeeeeecccCC----ceeE-EEEeec-CCC---cEEEEeecCCcEEEEEccCCcC
Q 038537 163 VYRENSHTLTMTLKFQQS----SVNA-LALSSF-FDN---YFLYSGSSDGSINFWEKDKMSG 215 (358)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~----~i~~-~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~ 215 (358)
.+++........ .|.. .... +.+... .++ ..++.++.+|.++++|.++++.
T Consensus 286 ~TG~~~W~~q~~--~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 345 (599)
T 1w6s_A 286 DTGEAKFGYQKT--PHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGAL 345 (599)
T ss_dssp TTCCEEEEEESS--TTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred CCCceeeEeecC--CCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCE
Confidence 887765544322 1111 0011 111110 145 5677788999999999887543
No 248
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.81 E-value=1.3e-06 Score=78.15 Aligned_cols=167 Identities=8% Similarity=-0.006 Sum_probs=94.1
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeeccc----ceEE--EEecC----C-EEEEEe------CCceEEEEeccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHG----EVRA--ILAHD----N-MLFTTN------KDCKIRIWNFTVSDNFRT 64 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~----~v~~--i~~~~----~-~l~s~~------~dg~i~iw~~~~~~~~~~ 64 (358)
|+.++.|+.|.-+|..+++.+........ .+.+ +..++ + .+++++ .+|.|..+|..+++.+..
T Consensus 120 v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 120 VFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE
T ss_pred EEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEee
Confidence 56788899999999999998876654321 1111 11222 2 666665 378999999999988775
Q ss_pred ccccccC---CCceeeeec--C-CC--------------cc-ccCCCceEEEEEeCCCCEEEEEec--------------
Q 038537 65 KKVTTLP---RRSSFLSFS--K-SN--------------TQ-QQHRDCVSCMAFYHAEGLLYTGSF-------------- 109 (358)
Q Consensus 65 ~~~~~~~---~~~~~~~~~--~-~~--------------~~-~~h~~~v~~~~~~~~~~~l~~~~~-------------- 109 (358)
....... ......... . .. .. .+....-..+++.|+..+++.+..
T Consensus 200 ~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~g 279 (582)
T 1flg_A 200 RPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKG 279 (582)
T ss_dssp EESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTT
T ss_pred cCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCC
Confidence 4321100 000000000 0 00 00 000111134677777777776653
Q ss_pred ------C----CeEEEEEccCCcccccccccccc--------cCeEEEEEc-CCCC---EEEEEeCCCcEEEEEceecCC
Q 038537 110 ------D----KTVKAWRVLDKRCTCVDSFVAHE--------SNVNAIVVN-QDDG---FVFTCSSDGSVKIWRRVYREN 167 (358)
Q Consensus 110 ------d----g~i~iwd~~~~~~~~~~~~~~~~--------~~v~~~~~~-~~~~---~l~~~~~dg~i~~wd~~~~~~ 167 (358)
| +.|..+|..+++..-......|. .++. +... .+++ .++.++.+|.++++|..+++.
T Consensus 280 g~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 358 (582)
T 1flg_A 280 GNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358 (582)
T ss_dssp SCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCE
T ss_pred CcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCE
Confidence 2 68999999998832222222232 2222 2222 4563 788899999999999877765
Q ss_pred cc
Q 038537 168 SH 169 (358)
Q Consensus 168 ~~ 169 (358)
..
T Consensus 359 lw 360 (582)
T 1flg_A 359 QN 360 (582)
T ss_dssp EE
T ss_pred ec
Confidence 43
No 249
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.79 E-value=2.5e-06 Score=76.34 Aligned_cols=196 Identities=11% Similarity=-0.021 Sum_probs=112.0
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccc---------eEEEEecCCEEEEEeCCceEEEEecccccccccccccccCC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGE---------VRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPR 72 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~---------v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 72 (358)
|++++.++.|.-+|..+++.+..+...... ...+...++.++.++.|+.|..+|..+++.+..........
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~ 150 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGA 150 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGG
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCc
Confidence 455666445999999999988776544321 12234467788889999999999999998877654321100
Q ss_pred CceeeeecCCCccccCCCceEEEEEe-CCCC-EEEEEe------cCCeEEEEEccCCcccccccccccc-----------
Q 038537 73 RSSFLSFSKSNTQQQHRDCVSCMAFY-HAEG-LLYTGS------FDKTVKAWRVLDKRCTCVDSFVAHE----------- 133 (358)
Q Consensus 73 ~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~-~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~----------- 133 (358)
. ......++ +.=. .+++ .+++++ .++.|.-+|..+++. +-......
T Consensus 151 ~-----------~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~--~W~~~~~~~~~~p~~~~~~ 215 (582)
T 1flg_A 151 G-----------YTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE--IWMRPFVEGHMGRLNGKDS 215 (582)
T ss_dssp T-----------CBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE--EEEEESSTTCEEEETTEEE
T ss_pred C-----------cccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE--EeecCCCccccccccCccc
Confidence 0 00011111 1100 1222 455554 378888888888762 11111000
Q ss_pred ------------------------------cCeEEEEEcCCCCEEEEEeC--------------------C----CcEEE
Q 038537 134 ------------------------------SNVNAIVVNQDDGFVFTCSS--------------------D----GSVKI 159 (358)
Q Consensus 134 ------------------------------~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~~ 159 (358)
..-..++++|+...++.+.. | +.|..
T Consensus 216 ~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~A 295 (582)
T 1flg_A 216 TVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVG 295 (582)
T ss_dssp EESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEE
T ss_pred ccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEE
Confidence 00023567777777777663 2 57999
Q ss_pred EEceecCCcceeeeeecccCC----ceeE-EEEeec-CCC---cEEEEeecCCcEEEEEccCCc
Q 038537 160 WRRVYRENSHTLTMTLKFQQS----SVNA-LALSSF-FDN---YFLYSGSSDGSINFWEKDKMS 214 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~----~i~~-~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~ 214 (358)
+|..+++..+..... .|.. .+.. +.+... .++ ..++.++.+|.++++|..+++
T Consensus 296 lD~~TG~~~W~~q~~--~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 357 (582)
T 1flg_A 296 VDPSSGEVKWFYQHT--PNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp ECTTTCCEEEEEESS--TTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred EeCCCCCEEEEEeCC--CCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence 999888766554321 1110 0111 112210 145 478889999999999987754
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.78 E-value=4.2e-07 Score=71.16 Aligned_cols=170 Identities=8% Similarity=-0.001 Sum_probs=111.3
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccc-eEEEEecCCEEEEE-eCCceEEEEecccccccccccccccCCCceeeee
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGE-VRAILAHDNMLFTT-NKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSF 79 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~-v~~i~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
..+.+.+|.|+++|+.+++.+..+ -.... --.+.+.++.|+.. -.++.+.+||..+.+.+......
T Consensus 68 y~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~----------- 135 (268)
T 3nok_A 68 FESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS----------- 135 (268)
T ss_dssp EEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS-----------
T ss_pred EEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC-----------
Confidence 457778888999999999988877 33221 23477776655554 46889999999988776554321
Q ss_pred cCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccc--ccc---cCeEEEEEcCCCCEEEEEeCC
Q 038537 80 SKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFV--AHE---SNVNAIVVNQDDGFVFTCSSD 154 (358)
Q Consensus 80 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~---~~v~~~~~~~~~~~l~~~~~d 154 (358)
+. -..++ ++++.|+.+..++.|.++|..+.+ .+..+. .+. ..++.+.|. +|...+..-.+
T Consensus 136 -------~e---GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~--v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s 200 (268)
T 3nok_A 136 -------GE---GWGLC--YWNGKLVRSDGGTMLTFHEPDGFA--LVGAVQVKLRGQPVELINELECA-NGVIYANIWHS 200 (268)
T ss_dssp -------SC---CCCEE--EETTEEEEECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred -------Cc---eeEEe--cCCCEEEEECCCCEEEEEcCCCCe--EEEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence 11 12333 467778877778999999998877 343332 222 245677777 67655555568
Q ss_pred CcEEEEEceecCCcceeeee-e--------cccCCceeEEEEeecCCCcEEEEe
Q 038537 155 GSVKIWRRVYRENSHTLTMT-L--------KFQQSSVNALALSSFFDNYFLYSG 199 (358)
Q Consensus 155 g~i~~wd~~~~~~~~~~~~~-~--------~~~~~~i~~~~~~~~~~~~~l~~~ 199 (358)
..|.+.|..+++....+... + .....-.+.++++| ..+.++++|
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp-~~~rlfVTG 253 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEP-GSGRIFMTG 253 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECT-TTCCEEEEE
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcC-CCCEEEEeC
Confidence 89999999877655544332 1 11224678999998 234455555
No 251
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.77 E-value=1.3e-06 Score=69.23 Aligned_cols=179 Identities=7% Similarity=-0.016 Sum_probs=119.5
Q ss_pred CCcEEEEeCCCceeeeeeeeccc-ceEEEEecCCEEEEEe-CCceEEEEecccccccccccccccCCCceeeeecCCCcc
Q 038537 8 STRIRVWRQPDCVERGFIKARHG-EVRAILAHDNMLFTTN-KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQ 85 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~~h~~-~v~~i~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (358)
++.|++.|+.+++.+..+..... ....+.++++.|+.+. .++.+.++|..+.+.+...... .
T Consensus 43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~--------------- 106 (266)
T 2iwa_A 43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-M--------------- 106 (266)
T ss_dssp TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-S---------------
T ss_pred CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-C---------------
Confidence 57999999999998887753222 2335667776666555 5789999999987766543321 0
Q ss_pred ccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccc--cc---cCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 038537 86 QQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA--HE---SNVNAIVVNQDDGFVFTCSSDGSVKIW 160 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~dg~i~~w 160 (358)
++ ...++++++.|+++..++.|.++|..+.+ .+..+.- .. ..+..+.|. ++...+....++.|.+.
T Consensus 107 -~~-----g~glt~Dg~~l~vs~gs~~l~viD~~t~~--v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vI 177 (266)
T 2iwa_A 107 -KD-----GWGLATDGKILYGSDGTSILYEIDPHTFK--LIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARI 177 (266)
T ss_dssp -SS-----CCEEEECSSSEEEECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred -CC-----eEEEEECCCEEEEECCCCeEEEEECCCCc--EEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEE
Confidence 11 13355578877777778999999998876 3333331 11 236788888 67555555568899999
Q ss_pred EceecCCcceeeee-ec--------ccCCceeEEEEeecCCC-cEEEEeecCCcEEEEEccCC
Q 038537 161 RRVYRENSHTLTMT-LK--------FQQSSVNALALSSFFDN-YFLYSGSSDGSINFWEKDKM 213 (358)
Q Consensus 161 d~~~~~~~~~~~~~-~~--------~~~~~i~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~ 213 (358)
|..+++....+... .. ........++++| ++ .+++++...+.+...++...
T Consensus 178 D~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~--~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 178 SAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ--ENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET--TTTEEEEEETTCSEEEEEEEEEC
T ss_pred ECCCCcEEEEEECCCcccccccccccccCceEEEEEcC--CCCEEEEECCCCCeEEEEEEecc
Confidence 99877655544332 10 0113568999998 65 46666767889999888763
No 252
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.76 E-value=3.1e-05 Score=62.03 Aligned_cols=197 Identities=10% Similarity=0.021 Sum_probs=114.4
Q ss_pred CceEEEEEeCCCCEEEEE-ecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEE-eCCCcEEEEEceecCC
Q 038537 90 DCVSCMAFYHAEGLLYTG-SFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC-SSDGSVKIWRRVYREN 167 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~ 167 (358)
..+..+++++++..|+.+ ..++.|..++...... .............+++++++..++.+ ...+.|.++++....
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~- 112 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP--TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ- 112 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC--EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc--EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-
Confidence 347899999976655554 4568999999876542 11222222467899999976555554 456789999875322
Q ss_pred cceeeeeecccCCceeEEEEeecCCCcEEEEeec---CCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEE-EEe
Q 038537 168 SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS---DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLI-FSG 243 (358)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~ 243 (358)
...+ ..........++++| ++..|+.+.. .+.|..+++..... ..... .......-++++++++.| ++-
T Consensus 113 ~~~~---~~~~~~~P~~i~vd~--~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~-~~~~~P~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 113 RRVL---FDTGLVNPRGIVTDP--VRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQ-DNLGLPNGLTFDAFSSQLCWVD 185 (267)
T ss_dssp CEEE---ECSSCSSEEEEEEET--TTTEEEEEECCSSSCEEEEEETTSCCC-EEEEC-TTCSCEEEEEEETTTTEEEEEE
T ss_pred EEEE---EECCCCCccEEEEee--CCCEEEEEECCCCCcEEEEEecCCCCc-EEEEE-CCCCCCcEEEEcCCCCEEEEEE
Confidence 1111 111224568899987 6565555543 36888888764211 11100 001112235666766555 455
Q ss_pred eCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 244 SEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 244 ~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
...+.|.++|..... ......+. ....+++.. . +.++++....+.|.++|..+
T Consensus 186 ~~~~~I~~~~~~g~~----~~~~~~~~-~~P~gi~~d-~------~~lyva~~~~~~v~~~d~~~ 238 (267)
T 1npe_A 186 AGTHRAECLNPAQPG----RRKVLEGL-QYPFAVTSY-G------KNLYYTDWKTNSVIAMDLAI 238 (267)
T ss_dssp TTTTEEEEEETTEEE----EEEEEECC-CSEEEEEEE-T------TEEEEEETTTTEEEEEETTT
T ss_pred CCCCEEEEEecCCCc----eEEEecCC-CCceEEEEe-C------CEEEEEECCCCeEEEEeCCC
Confidence 566899999997542 12222222 223566654 2 56667666778898888763
No 253
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.76 E-value=1.1e-06 Score=68.86 Aligned_cols=172 Identities=10% Similarity=0.036 Sum_probs=111.9
Q ss_pred EEeeeCCC--cEEEEeCCCceeeeeeeecccc-eEEEEecCCEEEEEe-CCceEEEEecccccccccccccccCCCceee
Q 038537 2 VFTGSSST--RIRVWRQPDCVERGFIKARHGE-VRAILAHDNMLFTTN-KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 2 l~tg~~dg--~v~vw~~~~~~~~~~~~~h~~~-v~~i~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
..+++.+| .|+++|+.+++.+..+...... --.+.+.++.|+... .++.+.+||..+.+.+......
T Consensus 56 yestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~--------- 126 (262)
T 3nol_A 56 YESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD--------- 126 (262)
T ss_dssp EEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECS---------
T ss_pred EEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECC---------
Confidence 34555555 8999999999998887654332 234677777666665 5889999999988876544321
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccc--cc---cCeEEEEEcCCCCEEEEEe
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA--HE---SNVNAIVVNQDDGFVFTCS 152 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~ 152 (358)
+ ....++++++.|+.+..++.|.++|..+.+ .+..+.. .. ..++.+.|. ++...+..-
T Consensus 127 ---------~-----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~--v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 127 ---------G-----EGWGLTHNDQYLIMSDGTPVLRFLDPESLT--PVRTITVTAHGEELPELNELEWV-DGEIFANVW 189 (262)
T ss_dssp ---------S-----CCCCEEECSSCEEECCSSSEEEEECTTTCS--EEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred ---------C-----CceEEecCCCEEEEECCCCeEEEEcCCCCe--EEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence 1 112333577777777768899999998876 3433322 12 335567776 676665555
Q ss_pred CCCcEEEEEceecCCcceeeee-ec-------ccCCceeEEEEeecCCCcEEEEeec
Q 038537 153 SDGSVKIWRRVYRENSHTLTMT-LK-------FQQSSVNALALSSFFDNYFLYSGSS 201 (358)
Q Consensus 153 ~dg~i~~wd~~~~~~~~~~~~~-~~-------~~~~~i~~~~~~~~~~~~~l~~~~~ 201 (358)
.+..|.+.|..+++....+... +. ....-.+.++++| +++.|++.+.
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp--~~~~lfVTGK 244 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK--EHHRLFVTGK 244 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET--TTTEEEEEET
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC--CCCEEEEECC
Confidence 6889999999877655544332 11 1124568999998 6555555543
No 254
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.73 E-value=8.5e-07 Score=77.65 Aligned_cols=250 Identities=9% Similarity=0.058 Sum_probs=150.0
Q ss_pred EEEEEeCCceEEEEecccccccccccccccCCC---------ceeee------------ecCCCccccCCCceEEEEEeC
Q 038537 41 MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRR---------SSFLS------------FSKSNTQQQHRDCVSCMAFYH 99 (358)
Q Consensus 41 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~---------~~~~~------------~~~~~~~~~h~~~v~~~~~~~ 99 (358)
.+.+|+..|.++|+-+.+.+.+....+...... ...+. ..-...+. .+.......|.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~--~gd~hh~~~s~ 94 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHD--NGDLHHVHMSF 94 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCC--CCCBCCEEEEE
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecc--cCCCCccccCC
Confidence 367889999999999998887765444322110 00010 00000110 11122244443
Q ss_pred -----CCCEEEEEec-CCeEEEEEccCCcccccccccccccCeEEEEE-c-CCCCEEEEEeC------------------
Q 038537 100 -----AEGLLYTGSF-DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVV-N-QDDGFVFTCSS------------------ 153 (358)
Q Consensus 100 -----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~~------------------ 153 (358)
||++|+.... ++.|.+.|+.+.+...+..+.. ......+++ . |++.+++++++
T Consensus 95 t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~-g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~ 173 (595)
T 1fwx_A 95 TEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY 173 (595)
T ss_dssp ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred CCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC-CCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence 7887777655 5679999999987333224332 345788887 5 89999998852
Q ss_pred CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC------------------------------
Q 038537 154 DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG------------------------------ 203 (358)
Q Consensus 154 dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg------------------------------ 203 (358)
++.+.+.|..+.+...++.. . .....++++| +++++++.+.+.
T Consensus 174 ~~~vtvID~~t~~v~~qI~V----g-g~pd~~~~sp--dGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 174 VNVFTAVDADKWEVAWQVLV----S-GNLDNCDADY--EGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp EEEEEEEETTTTEEEEEEEE----S-SCCCCEEECS--SSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred CceEEEEECCCCeEEEEEEe----C-CCccceEECC--CCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 45788888865433333221 1 2456677887 888888877543
Q ss_pred --------cEEEEEccCCcCCcccccee-ecccceeEEEeeeCCEEEEee-CCCeEEEEEcCCCce--------eeeeee
Q 038537 204 --------SINFWEKDKMSGGFNHGGFL-QGHCFAVLCLVAIEKLIFSGS-EDTTIRVWRRAEGGC--------YHECLA 265 (358)
Q Consensus 204 --------~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--------~~~~~~ 265 (358)
.|.+.|.++.+.. .....+ .+....-+.++|||+++++++ .+.+|.++|+.+.+. ......
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~-~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASS-LFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCC-SSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred CCCeeEECcEEEEeCcccCCc-eeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence 2555555541110 101111 122223367889998776555 788999999986420 001223
Q ss_pred eecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 266 VLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 266 ~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.... ......++|+|+ |...++.-.|+.|.+||+..
T Consensus 326 ~v~v-G~gP~h~aF~~d------G~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 326 EPEL-GLGPLHTAFDGR------GNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CCBC-CSCEEEEEECTT------SEEEEEETTTTEEEEEEHHH
T ss_pred EcCC-CCCcceEEECCC------CeEEEEEecCCcEEEEEhhH
Confidence 3322 235688999999 86777888999999999986
No 255
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.69 E-value=1.1e-05 Score=66.72 Aligned_cols=250 Identities=13% Similarity=0.043 Sum_probs=134.8
Q ss_pred EEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCC--CccccCCCceEEEEEeC-CCCEEEEEe
Q 038537 34 AILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS--NTQQQHRDCVSCMAFYH-AEGLLYTGS 108 (358)
Q Consensus 34 ~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~-~~~~l~~~~ 108 (358)
++.+ ++++++++..++.|..|+..+..... ............ .... .........+..+++.+ +++ |+.+.
T Consensus 23 ~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~--~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 23 SFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAF--CENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHH--HTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred EEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-Eecccccccccc--cccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 4444 45668888889999999877543211 000000000000 0000 00001123478899997 554 55555
Q ss_pred cCCeEEEEEccCCcccccccc-c-ccccCeEEEEEcC-CCCEEEEEeC-----------------CCcEEEEEceecCCc
Q 038537 109 FDKTVKAWRVLDKRCTCVDSF-V-AHESNVNAIVVNQ-DDGFVFTCSS-----------------DGSVKIWRRVYRENS 168 (358)
Q Consensus 109 ~dg~i~iwd~~~~~~~~~~~~-~-~~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~~wd~~~~~~~ 168 (358)
..+.|..+|..++....+... . ........+++.+ ++++.++-.. ++.|..+|..++..
T Consensus 99 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~- 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET- 177 (322)
T ss_dssp TTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE-
T ss_pred CCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE-
Confidence 555688888776542222111 1 1123478899999 8887666432 36677777643321
Q ss_pred ceeeeeecccCCceeEEEEeecCCCcEEEEe-ecCCcEEEEEccCCcCC-ccccceeecccceeEEEeeeCCEEEEeeC-
Q 038537 169 HTLTMTLKFQQSSVNALALSSFFDNYFLYSG-SSDGSINFWEKDKMSGG-FNHGGFLQGHCFAVLCLVAIEKLIFSGSE- 245 (358)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 245 (358)
... ...-.....+++++ +++.|+.+ ...+.|..|++...... ........+ ..-+++.++|++.++...
T Consensus 178 ---~~~-~~~~~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g--P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 178 ---TLL-LKELHVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN--PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp ---EEE-EEEESCCCEEEECT--TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS--EEEEEECTTSCEEEEEEEE
T ss_pred ---EEe-ccCCccCcceEECC--CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC--CCCeEECCCCCEEEEecCc
Confidence 111 11123456789987 88765555 55689999998752110 111111112 122456677776666544
Q ss_pred ---------CCeEEEEEcCCCceeeeeeeeecCc----ccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 246 ---------DTTIRVWRRAEGGCYHECLAVLDGH----RGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 246 ---------dg~i~iwd~~~~~~~~~~~~~~~~h----~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.+.|..+|.. + +.+..+... ...++++++ .+ +.++++...++.|..+++..
T Consensus 250 ~~~~~~~~~~~~v~~~d~~-G----~~~~~~~~~~g~~~~~~~~~~~-~~------g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDEF-G----NILEVIPLPPPFAGEHFEQIQE-HD------GLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp TTSSTTSCEEEEEEEECTT-S----CEEEEEECCTTTTTSCCCEEEE-ET------TEEEEECSSCSEEEEEEC--
T ss_pred ccccccCCCccEEEEECCC-C----CEEEEEECCCCCccccceEEEE-eC------CEEEEeecCCCceEEEeccc
Confidence 4678888875 4 233333322 234666766 34 67778877888999998763
No 256
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.65 E-value=9.1e-05 Score=69.31 Aligned_cols=272 Identities=13% Similarity=0.194 Sum_probs=153.7
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeee-------cccceEEEEec-CCEEEEEeCCceEEEEecccccccccccccccCCC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKA-------RHGEVRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~-------h~~~v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
|..|+.+ -|.+||..+++....... ....|.++..+ .+.|..|+.++-|..|+............. .+
T Consensus 276 lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~-~~-- 351 (795)
T 4a2l_A 276 LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIP-YK-- 351 (795)
T ss_dssp EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCT-TS--
T ss_pred EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCC-CC--
Confidence 4456655 488899877665433221 23568888875 456778888888999987654321110000 00
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccccc------ccccCeEEEEEcCCCCE
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFV------AHESNVNAIVVNQDDGF 147 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~ 147 (358)
. .-....|.++...++|. |..|+.++-|..|+..+++......-. .....|.++...++++.
T Consensus 352 ---------~--~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~ 419 (795)
T 4a2l_A 352 ---------N--SLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSL 419 (795)
T ss_dssp ---------S--SCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTE
T ss_pred ---------C--CCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCE
Confidence 0 11245689999888776 566788877999998776532221110 12357999999888885
Q ss_pred EEEEeCCCcEEEEEceecCCcceeee-eecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcccccee---
Q 038537 148 VFTCSSDGSVKIWRRVYRENSHTLTM-TLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFL--- 223 (358)
Q Consensus 148 l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--- 223 (358)
|..|+.++-|..+|..++... .+.. ........|.++...+ ++.+. .|+.+ -+.+||..+... ......
T Consensus 420 lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~--~g~lw-igt~~-Gl~~~~~~~~~~--~~~~~~~~~ 492 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDG--EGNLW-LGTLS-ALVRFNPEQRSF--TTIEKEKDG 492 (795)
T ss_dssp EEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECS--SSCEE-EEESS-CEEEEETTTTEE--EECCBCTTC
T ss_pred EEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECC--CCCEE-EEecC-ceeEEeCCCCeE--EEccccccc
Confidence 666777777999997554311 1110 0012345678887765 56544 44444 488898765321 111100
Q ss_pred -ecccceeEEEeee-CCEEEEeeCCCeEEEEEcCCCceeeeee---eeecCcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 224 -QGHCFAVLCLVAI-EKLIFSGSEDTTIRVWRRAEGGCYHECL---AVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 224 -~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
.-....+.++..+ ...|..|+.+ -|..||..++.. ... ..-......|.++...++ |.+.++.. +
T Consensus 493 ~~~~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~------g~lWigT~-~ 562 (795)
T 4a2l_A 493 TPVVSKQITTLFRDSHKRLWIGGEE-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASN------GIIWVGTR-E 562 (795)
T ss_dssp CBCCCCCEEEEEECTTCCEEEEESS-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTT------SCEEEEES-S
T ss_pred cccCCceEEEEEECCCCCEEEEeCC-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCC------CCEEEEeC-C
Confidence 1112345565543 2334445554 488899877632 100 000123457889988887 65554443 3
Q ss_pred CcEEEEEee
Q 038537 299 QTFKVWRVK 307 (358)
Q Consensus 299 g~v~iw~~~ 307 (358)
-|..||..
T Consensus 563 -Gl~~~d~~ 570 (795)
T 4a2l_A 563 -GFYCFNEK 570 (795)
T ss_dssp -CEEEEETT
T ss_pred -CceeECCC
Confidence 46667653
No 257
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.63 E-value=2.6e-06 Score=77.81 Aligned_cols=240 Identities=10% Similarity=0.014 Sum_probs=127.7
Q ss_pred cCCEEEEEeCCc-----------eEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEE
Q 038537 38 HDNMLFTTNKDC-----------KIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYT 106 (358)
Q Consensus 38 ~~~~l~s~~~dg-----------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 106 (358)
++..++.|+.++ .+.+||..+++-....... ..+.....++++..++++++.
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-----------------~~~~~~~~~~~~~~~g~lyv~ 259 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-----------------TKHDMFCPGISMDGNGQIVVT 259 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-----------------CSCCCSSCEEEECTTSCEEEE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-----------------CCCCCccccccCCCCCCEEEe
Confidence 677777776543 5788888766532211100 112233445677789999999
Q ss_pred Eec-CCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEe-CC-----CcEEEEEceecCCcceeeeee--cc
Q 038537 107 GSF-DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCS-SD-----GSVKIWRRVYRENSHTLTMTL--KF 177 (358)
Q Consensus 107 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~~wd~~~~~~~~~~~~~~--~~ 177 (358)
|+. +..+.+||..+.++..+..+.... .-.+++..+++++++.|+ .+ ..+.+||..+.. +...... ..
T Consensus 260 GG~~~~~v~~yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~--W~~~~~~~~~p 336 (656)
T 1k3i_A 260 GGNDAKKTSLYDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT--WTSLPNAKVNP 336 (656)
T ss_dssp CSSSTTCEEEEEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE--EEEETTSCSGG
T ss_pred CCCCCCceEEecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc--ceeCCCccccc
Confidence 884 468999999988866555443222 223455667899999988 34 568999985432 1111000 00
Q ss_pred cCCceeEEEEeecCCCcEEEEeecCC---------cEEEEEccCCcCCccccceeec--------ccceeEEEe-eeCCE
Q 038537 178 QQSSVNALALSSFFDNYFLYSGSSDG---------SINFWEKDKMSGGFNHGGFLQG--------HCFAVLCLV-AIEKL 239 (358)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~ 239 (358)
....-....+.. ++..++.|+.+| .+..||........ ....... .......+. .++++
T Consensus 337 ~~~~~~~~~~~~--~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~-~~~~~~~~~~~~~~~~~~~av~~~~~~~~i 413 (656)
T 1k3i_A 337 MLTADKQGLYRS--DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK-SAGKRQSNRGVAPDAMCGNAVMYDAVKGKI 413 (656)
T ss_dssp GCCCCTTGGGTT--TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE-EEEECEETTEECCCCBTCEEEEEETTTTEE
T ss_pred cccccccceeec--CCceEEEECCCCcEEEecCccceeeeecCCcceee-cCCccccccccCCCCCCCceEeccCCCCeE
Confidence 000000001111 444455554443 46778876632111 0000000 011112222 36788
Q ss_pred EEEeeCCC-----------eEEEEEcCCCceeeeeeeeecCcccce-EEEEeecccceeeeCeEEEEccCC---------
Q 038537 240 IFSGSEDT-----------TIRVWRRAEGGCYHECLAVLDGHRGPV-RCLAASLEMEKVVMGFLVYSSSLD--------- 298 (358)
Q Consensus 240 l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~h~~~v-~~i~~~~~~~~~~~~~~l~s~~~d--------- 298 (358)
++.|+.++ .|.+||..+... ..+..-..+.... .++...|+ +++++.||.+
T Consensus 414 ~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W--~~~~~~~mp~~R~~~~~~~l~~------g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 414 LTFGGSPDYQDSDATTNAHIITLGEPGTSPN--TVFASNGLYFARTFHTSVVLPD------GSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EEECCBSSSSSSBCCCCEEEEECCSTTSCCE--EEECTTCCSSCCBSCEEEECTT------SCEEEECCBSBCCTTCCCS
T ss_pred EEEeCCCCCCCCCcCCcceEEEcCCCCCCCe--eEEccCCCCCCcccCCeEECCC------CCEEEECCcccCcCcCCCC
Confidence 88888543 678888877642 2221001122222 34456677 7899999865
Q ss_pred --CcEEEEEeee
Q 038537 299 --QTFKVWRVKV 308 (358)
Q Consensus 299 --g~v~iw~~~~ 308 (358)
..+.+||...
T Consensus 486 ~~~~v~~ydp~t 497 (656)
T 1k3i_A 486 PVFTPEIYVPEQ 497 (656)
T ss_dssp BCCCCEEEEGGG
T ss_pred cccceEEEcCCC
Confidence 4688998754
No 258
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.63 E-value=3.9e-05 Score=63.37 Aligned_cols=228 Identities=11% Similarity=0.024 Sum_probs=125.3
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeee-------------------cccceEEEEec--CCEEEEEeCCceEEEEecccc
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKA-------------------RHGEVRAILAH--DNMLFTTNKDCKIRIWNFTVS 59 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~-------------------h~~~v~~i~~~--~~~l~s~~~dg~i~iw~~~~~ 59 (358)
+++++..++.|..|+..+++....... .......+.++ ++.|+.+...+.|..+|..++
T Consensus 32 ~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g 111 (322)
T 2fp8_A 32 GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGG 111 (322)
T ss_dssp SEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCE
T ss_pred EEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCC
Confidence 467788889999998876543221110 01245677665 456777765666888886644
Q ss_pred cccccccccccCCCceeeeecCCCccccCCCceEEEEEeC-CCCEEEEEec-----------------CCeEEEEEccCC
Q 038537 60 DNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYH-AEGLLYTGSF-----------------DKTVKAWRVLDK 121 (358)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~-----------------dg~i~iwd~~~~ 121 (358)
........ .. .........+++.+ +|++.++-.. ++.|..+|..++
T Consensus 112 ~~~~~~~~--~~--------------~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 112 HATQLATS--VD--------------GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp ECEEEESE--ET--------------TEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EEEEeccc--CC--------------CCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 32110000 00 01123467899999 8876665422 367888887766
Q ss_pred cccccccccccccCeEEEEEcCCCCEEEEE-eCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEee
Q 038537 122 RCTCVDSFVAHESNVNAIVVNQDDGFVFTC-SSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS 200 (358)
Q Consensus 122 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~ 200 (358)
+... +.........|+++|+++.|+.+ +..+.|..|++...... ....... ... ...+++.+ ++++.++..
T Consensus 176 ~~~~---~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~-~~~~~~~-~~g-P~gi~~d~--~G~l~va~~ 247 (322)
T 2fp8_A 176 ETTL---LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-TAEVLVK-IPN-PGNIKRNA--DGHFWVSSS 247 (322)
T ss_dssp EEEE---EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT-CEEEEEE-CSS-EEEEEECT--TSCEEEEEE
T ss_pred EEEE---eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC-ccceEEe-CCC-CCCeEECC--CCCEEEEec
Confidence 5211 11112345679999999866655 55688999998643211 1111011 123 67788887 787666654
Q ss_pred c----------CCcEEEEEccCCcCCccccceeecc----cceeEEEe-eeCCEEEEeeCCCeEEEEEcCCC
Q 038537 201 S----------DGSINFWEKDKMSGGFNHGGFLQGH----CFAVLCLV-AIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 201 ~----------dg~i~i~d~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
. .+.|..+|... . ....+... ...+..+. .++.++++...++.|..+++...
T Consensus 248 ~~~~~~~~~~~~~~v~~~d~~G-~----~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 248 EELDGNMHGRVDPKGIKFDEFG-N----ILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EETTSSTTSCEEEEEEEECTTS-C----EEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC---
T ss_pred CcccccccCCCccEEEEECCCC-C----EEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecccc
Confidence 4 45677777542 1 11111111 11122222 34555555557788888887654
No 259
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.62 E-value=1.3e-05 Score=62.88 Aligned_cols=190 Identities=8% Similarity=0.034 Sum_probs=110.3
Q ss_pred eEEEEEeCCCCEEEEEecCC--eEEEEEccCCcccccccccccccCe--EEEEEcCCCCEEEEE-eCCCcEEEEEceecC
Q 038537 92 VSCMAFYHAEGLLYTGSFDK--TVKAWRVLDKRCTCVDSFVAHESNV--NAIVVNQDDGFVFTC-SSDGSVKIWRRVYRE 166 (358)
Q Consensus 92 v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~ 166 (358)
...+.|+ ++.+..+.+.+| .|+++|+.+++ .+..+.. .... ..+... ++.|... -.++.+.++|..+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk--v~~~~~l-~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK--TLQQIEL-GKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC--EEEEEEC-CTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCc--EEEEEec-CCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc
Confidence 4788998 676667777766 89999999998 3444332 2223 334443 4444444 458899999997665
Q ss_pred CcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccc-ceeEEEee-eCCEEEEee
Q 038537 167 NSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC-FAVLCLVA-IEKLIFSGS 244 (358)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~~ 244 (358)
...++.. . ..-..++ + ++..|+.+..++.|.++|..+.+......-...+.. ..+..+.+ ++.+.+..-
T Consensus 119 ~~~ti~~----~-~eG~glt--~--dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w 189 (262)
T 3nol_A 119 QVRSFNY----D-GEGWGLT--H--NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVW 189 (262)
T ss_dssp EEEEEEC----S-SCCCCEE--E--CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred EEEEEEC----C-CCceEEe--c--CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEc
Confidence 4444332 1 1223343 4 667777776688899999887432222111111111 11122333 455444444
Q ss_pred CCCeEEEEEcCCCceeeeeeeeecC------------cccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 245 EDTTIRVWRRAEGGCYHECLAVLDG------------HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~~~~------------h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
.+..|.+.|..+++. +..+.. -....+.|+++|+. +++++||- . -=++|.++
T Consensus 190 ~~~~I~vIDp~tG~V----~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~-----~~lfVTGK-~-Wp~~~ev~ 253 (262)
T 3nol_A 190 QTNKIVRIDPETGKV----TGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH-----HRLFVTGK-L-WPKVFEIT 253 (262)
T ss_dssp TSSEEEEECTTTCBE----EEEEECTTGGGGSCSCCSSCCCEEEEEEETTT-----TEEEEEET-T-CSEEEEEE
T ss_pred cCCeEEEEECCCCcE----EEEEECCcCccccccccCcCCceEEEEEcCCC-----CEEEEECC-C-CCceEEEE
Confidence 688999999999954 322221 12356899999983 34555553 2 34556555
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.59 E-value=1.1e-05 Score=63.13 Aligned_cols=186 Identities=12% Similarity=0.026 Sum_probs=108.9
Q ss_pred ceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCe--EEEEEcCCCCEEEEEeCCCcEEEEEceecCCc
Q 038537 91 CVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNV--NAIVVNQDDGFVFTCSSDGSVKIWRRVYRENS 168 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 168 (358)
....+.|+ ++.+.++.+.+|.|+++|+.+++ .+..+ - .... ..+++.. +...++.-.++.+.+||..+.+..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgk--v~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQ--PVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSS--CSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCc--EEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEE
Confidence 34788887 45677777888999999999998 34443 1 2222 3455543 344445556899999999665544
Q ss_pred ceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccc-ceeEEEee-eCCEEEEeeCC
Q 038537 169 HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC-FAVLCLVA-IEKLIFSGSED 246 (358)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~~~d 246 (358)
.++.. . ..-..++ + ++..|+.+..++.|.++|..+.+......-...+.. ..+..+.+ ++.+.+..-.+
T Consensus 130 ~ti~~----~-~eGwGLt--~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s 200 (268)
T 3nok_A 130 RTTRY----S-GEGWGLC--Y--WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHS 200 (268)
T ss_dssp EEEEC----S-SCCCCEE--E--ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTC
T ss_pred EEEeC----C-CceeEEe--c--CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCC
Confidence 44332 1 2224444 3 567777777799999999887432222111111111 11233333 45544444467
Q ss_pred CeEEEEEcCCCceeeeeeee-ec--------CcccceEEEEeecccceeeeCeEEEEcc
Q 038537 247 TTIRVWRRAEGGCYHECLAV-LD--------GHRGPVRCLAASLEMEKVVMGFLVYSSS 296 (358)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~-~~--------~h~~~v~~i~~~~~~~~~~~~~~l~s~~ 296 (358)
..|.+.|..+++.....-.. +. .-....++|+++|+. +++++||-
T Consensus 201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~-----~rlfVTGK 254 (268)
T 3nok_A 201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGS-----GRIFMTGK 254 (268)
T ss_dssp SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTT-----CCEEEEET
T ss_pred CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCC-----CEEEEeCC
Confidence 89999999999542221111 10 112356899999983 35666664
No 261
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.56 E-value=0.00019 Score=58.77 Aligned_cols=221 Identities=13% Similarity=0.005 Sum_probs=118.8
Q ss_pred ceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe
Q 038537 31 EVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS 108 (358)
Q Consensus 31 ~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 108 (358)
....+.+ +++++++-..++.|..||...... .. ......+..+++.++++++++..
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~~---------------------~~~~~~p~gia~~~dG~l~vad~ 90 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IH---------------------ATVEGKVSGLAFTSNGDLVATGW 90 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EE---------------------EECSSEEEEEEECTTSCEEEEEE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCceE-EE---------------------EeCCCCceeEEEcCCCcEEEEec
Confidence 3445555 456666655788999888764321 10 01123578899999998665543
Q ss_pred cC-C-eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCccee-ee-----eecccCC
Q 038537 109 FD-K-TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTL-TM-----TLKFQQS 180 (358)
Q Consensus 109 ~d-g-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~-----~~~~~~~ 180 (358)
.. + .|..++..+++...+.... .......++..+++..+++-..++.|..+|...+...... .. .....-.
T Consensus 91 ~~~~~~v~~~d~~~g~~~~~~~~~-~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (306)
T 2p4o_A 91 NADSIPVVSLVKSDGTVETLLTLP-DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP 169 (306)
T ss_dssp CTTSCEEEEEECTTSCEEEEEECT-TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred cCCcceEEEEcCCCCeEEEEEeCC-CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCC
Confidence 32 2 4666777776633222221 1223455555555544444445888888886432100000 00 0001112
Q ss_pred ceeEEEEeecCCCcEE-EEeecCCcEEEEEccCCcCCcccccee-ecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCc
Q 038537 181 SVNALALSSFFDNYFL-YSGSSDGSINFWEKDKMSGGFNHGGFL-QGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 181 ~i~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 258 (358)
....+ ++ ++..| ++-...+.|..|++... ........+ ......-++++++|+++++....+.|.++|.. ++
T Consensus 170 ~pngi--s~--dg~~lyv~d~~~~~I~~~~~~~~-g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~ 243 (306)
T 2p4o_A 170 AANGL--KR--FGNFLYVSNTEKMLLLRIPVDST-DKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RS 243 (306)
T ss_dssp SEEEE--EE--ETTEEEEEETTTTEEEEEEBCTT-SCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CC
T ss_pred cCCCc--Cc--CCCEEEEEeCCCCEEEEEEeCCC-CCCCccEEEeccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CC
Confidence 33444 55 66544 55556789999998741 111111111 11112236777888887777778899999975 42
Q ss_pred eeeeeeeeecCcccceEEEEee---cc
Q 038537 259 CYHECLAVLDGHRGPVRCLAAS---LE 282 (358)
Q Consensus 259 ~~~~~~~~~~~h~~~v~~i~~~---~~ 282 (358)
. ..+..+.......++++|. |+
T Consensus 244 ~--~~~~~~~~~~~~p~~~a~~g~~~d 268 (306)
T 2p4o_A 244 T--TIIAQAEQGVIGSTAVAFGQTEGD 268 (306)
T ss_dssp E--EEEECGGGTCTTEEEEEECCSTTT
T ss_pred E--EEEeecccccCCceEEEEecccCC
Confidence 1 1122233233567899998 77
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.56 E-value=1.5e-05 Score=61.86 Aligned_cols=170 Identities=8% Similarity=0.021 Sum_probs=108.7
Q ss_pred EeeeCC--CcEEEEeCCCceeeeeeeecccc-eEEEEecCCEEEEE-eCCceEEEEecccccccccccccccCCCceeee
Q 038537 3 FTGSSS--TRIRVWRQPDCVERGFIKARHGE-VRAILAHDNMLFTT-NKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLS 78 (358)
Q Consensus 3 ~tg~~d--g~v~vw~~~~~~~~~~~~~h~~~-v~~i~~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
.+.+.+ ..|+.+|+.+++.+..+...... --.+...++.|+.. -.++.+.+||..+.+.+......
T Consensus 35 estG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~---------- 104 (243)
T 3mbr_X 35 ESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP---------- 104 (243)
T ss_dssp EEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS----------
T ss_pred EECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC----------
Confidence 444554 48999999999998887654332 23456666655554 46889999999988776544321
Q ss_pred ecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccc--cc---cCeEEEEEcCCCCEEEEEeC
Q 038537 79 FSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA--HE---SNVNAIVVNQDDGFVFTCSS 153 (358)
Q Consensus 79 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~~l~~~~~ 153 (358)
+ . =..++ +++..|+.+..++.|.++|..+.+ .+..+.- +. ..++.+.+. ++...+..-.
T Consensus 105 --------~-~--Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~--~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~ 168 (243)
T 3mbr_X 105 --------G-E--GWALT--SDDSHLYMSDGTAVIRKLDPDTLQ--QVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL 168 (243)
T ss_dssp --------S-C--CCEEE--ECSSCEEEECSSSEEEEECTTTCC--EEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred --------C-C--ceEEe--eCCCEEEEECCCCeEEEEeCCCCe--EEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence 1 1 13343 467777777778999999998876 3333332 21 345667776 6666655556
Q ss_pred CCcEEEEEceecCCcceeeee-e--------cccCCceeEEEEeecCCCcEEEEee
Q 038537 154 DGSVKIWRRVYRENSHTLTMT-L--------KFQQSSVNALALSSFFDNYFLYSGS 200 (358)
Q Consensus 154 dg~i~~wd~~~~~~~~~~~~~-~--------~~~~~~i~~~~~~~~~~~~~l~~~~ 200 (358)
+..|.+.|..+++....+... + .....-.+.++++| +++.|++.+
T Consensus 169 s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~--~~~~lfVTG 222 (243)
T 3mbr_X 169 TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA--EHDRLFVTG 222 (243)
T ss_dssp TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET--TTTEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC--CCCEEEEEC
Confidence 789999999877655444322 1 01224678999998 555555444
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.54 E-value=0.0005 Score=64.21 Aligned_cols=281 Identities=12% Similarity=0.122 Sum_probs=151.4
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeee-------cccceEEEEec-CCEEEEEeCCceEEEEecccccccccccccccCCC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKA-------RHGEVRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~-------h~~~v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
|..|+.+ -+.+||..+.+....... ....|.++..+ .+.|..|+..+-|.+++..+......... .+
T Consensus 224 lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~-~f--- 298 (781)
T 3v9f_A 224 IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQI-RF--- 298 (781)
T ss_dssp EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC----------C---
T ss_pred EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeecc-cc---
Confidence 4455555 488888876654432221 23568888774 55777787756788888876543211100 00
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccc-------ccccccCeEEEEEcCCCC
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDS-------FVAHESNVNAIVVNQDDG 146 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~ 146 (358)
..+. .......-....|.++...++|. |..|+.++-|..++........... .......|.++...+++.
T Consensus 299 -~~~~-~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~ 375 (781)
T 3v9f_A 299 -EFIR-EGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK 375 (781)
T ss_dssp -EEEC-BCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC
T ss_pred -cccc-CCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC
Confidence 0000 00000112345689999888775 6677877779999887654222111 011235699999888776
Q ss_pred EEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecc
Q 038537 147 FVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGH 226 (358)
Q Consensus 147 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 226 (358)
+ ..|+.++-|..+|..++.... ...........|.++...+ ++. |..|+.++-+..+|..+.. ..........
T Consensus 376 l-Wigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~--~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~ 448 (781)
T 3v9f_A 376 L-WIGTDGGGINVFENGKRVAIY-NKENRELLSNSVLCSLKDS--EGN-LWFGTYLGNISYYNTRLKK--FQIIELEKNE 448 (781)
T ss_dssp E-EEEEBSSCEEEEETTEEEEEC-C-----CCCSBEEEEEECT--TSC-EEEEETTEEEEEECSSSCE--EEECCSTTTC
T ss_pred E-EEEeCCCcEEEEECCCCeEEE-ccCCCCCCCcceEEEEECC--CCC-EEEEeccCCEEEEcCCCCc--EEEeccCCCC
Confidence 4 456666668889875432111 0000112345678887764 444 5567776778888876522 1111000112
Q ss_pred cceeEEEeee-CCEEEEeeCCCeEEEEEcCCCceeeeeeeeec---CcccceEEEEeecccceeeeCeEEEEccCCCcEE
Q 038537 227 CFAVLCLVAI-EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLD---GHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFK 302 (358)
Q Consensus 227 ~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~ 302 (358)
...+.++..+ ...|..|+. +-|..||..+++. ....... .....|.++...++ |.+.+....+| |.
T Consensus 449 ~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~--~~~~~~~~~~~~~~~i~~i~~d~~------g~lWigt~~~G-l~ 518 (781)
T 3v9f_A 449 LLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKV--IHHYDTSNSQLLENFVRSIAQDSE------GRFWIGTFGGG-VG 518 (781)
T ss_dssp CCCEEEEEECTTSEEEEEET-TEEEEEESSSSSC--CEEECTTTSSCSCSCEEEEEECTT------CCEEEEESSSC-EE
T ss_pred CCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeE--EecccCcccccccceeEEEEEcCC------CCEEEEEcCCC-EE
Confidence 3456666655 345666666 4588999887642 1111111 11357889988877 55554443344 55
Q ss_pred EEEee
Q 038537 303 VWRVK 307 (358)
Q Consensus 303 iw~~~ 307 (358)
.||..
T Consensus 519 ~~~~~ 523 (781)
T 3v9f_A 519 IYTPD 523 (781)
T ss_dssp EECTT
T ss_pred EEeCC
Confidence 56543
No 264
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.54 E-value=6.9e-05 Score=58.16 Aligned_cols=199 Identities=12% Similarity=-0.006 Sum_probs=111.4
Q ss_pred CceEEEEEeCCCCEEEEEecC--CeEEEEEccCCccccccccccccc-CeEEEEEcCCCCEEEEEeCCCcEEEEEceecC
Q 038537 90 DCVSCMAFYHAEGLLYTGSFD--KTVKAWRVLDKRCTCVDSFVAHES-NVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRE 166 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 166 (358)
.....+.|++ +.+..+.+.+ ..|+.+|+.+++ .+....-... --..++.. .+...+..-.++.+.++|..+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk--v~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGR--ILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCC--EEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCC--EEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCc
Confidence 3466899986 5566666665 489999999998 3433322111 11334444 23444445568999999986555
Q ss_pred CcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeeccc-ceeEEEee-eCCEEEEee
Q 038537 167 NSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHC-FAVLCLVA-IEKLIFSGS 244 (358)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~~ 244 (358)
...++.. . ..-..++ + ++..|+.+..++.|.++|..+.+......-...+.. ..+..+.+ ++...+..-
T Consensus 97 ~~~ti~~----~-~~Gwglt--~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw 167 (243)
T 3mbr_X 97 PRARFRY----P-GEGWALT--S--DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVW 167 (243)
T ss_dssp EEEEEEC----S-SCCCEEE--E--CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred EEEEEeC----C-CCceEEe--e--CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEEC
Confidence 4443332 2 2224444 4 566666667789999999887432222111111111 12233444 444444444
Q ss_pred CCCeEEEEEcCCCceeeeeeee-ec--------CcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 245 EDTTIRVWRRAEGGCYHECLAV-LD--------GHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~-~~--------~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.+..|.+.|..+++.....-.. +. .-....++|+++|+. +++++||-. -=++|.++-
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~-----~~lfVTGK~--wp~~~~v~~ 233 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEH-----DRLFVTGKR--WPMLYEIRL 233 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTT-----TEEEEEETT--CSEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCC-----CEEEEECCC--CCcEEEEEE
Confidence 6789999999999542211100 10 112356899999973 356666643 345666654
No 265
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.50 E-value=0.00012 Score=57.65 Aligned_cols=205 Identities=11% Similarity=0.097 Sum_probs=122.5
Q ss_pred ccCCCceEEEEEeCCCCEEE-EEecCCeEEEEEccCCccccccccc-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEEce
Q 038537 86 QQHRDCVSCMAFYHAEGLLY-TGSFDKTVKAWRVLDKRCTCVDSFV-AHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRV 163 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 163 (358)
.+-...+..+++.|+++.|+ +...++.|...|.. ++ .+..+. .-......|++.+++.++++.-.++.+.++++.
T Consensus 23 ~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~--v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 23 AGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD--LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp TTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC--EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred CCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC--EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 45556799999999776555 46778889999987 55 333332 112567888999888776765567889998876
Q ss_pred ecCCcceee-e--ee--cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCC--cccc------ceeeccccee
Q 038537 164 YRENSHTLT-M--TL--KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGG--FNHG------GFLQGHCFAV 230 (358)
Q Consensus 164 ~~~~~~~~~-~--~~--~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~------~~~~~~~~~~ 230 (358)
......... . .+ ...+.....++++| .++.|+++.......+|.+...... .... .........-
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~--~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~ 177 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSR--QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSG 177 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEET--TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeC--CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCcee
Confidence 544211111 1 11 12355678999998 7767777776666666666521000 1100 0000111233
Q ss_pred EEEeee-CCEEEEeeCCCeEEEEEcCCCceeeeeeeeec-Ccc------cceEEEEeecccceeeeCeEEEEccCCCcEE
Q 038537 231 LCLVAI-EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLD-GHR------GPVRCLAASLEMEKVVMGFLVYSSSLDQTFK 302 (358)
Q Consensus 231 ~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~h~------~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~ 302 (358)
+++.|. +.+++.......|.++|..... .....+. +.. ..--.|+|.++ |.+.++ ++-. .
T Consensus 178 l~~dp~tg~lliLS~~s~~L~~~d~~g~~---~~~~~L~~g~~~l~~~~~qpEGia~d~~------G~lyIv-sE~n--~ 245 (255)
T 3qqz_A 178 AEFNQQKNTLLVLSHESRALQEVTLVGEV---IGEMSLTKGSRGLSHNIKQAEGVAMDAS------GNIYIV-SEPN--R 245 (255)
T ss_dssp EEEETTTTEEEEEETTTTEEEEECTTCCE---EEEEECSTTGGGCSSCCCSEEEEEECTT------CCEEEE-ETTT--E
T ss_pred EEEcCCCCeEEEEECCCCeEEEEcCCCCE---EEEEEcCCccCCcccccCCCCeeEECCC------CCEEEE-cCCc--e
Confidence 445553 5677777788899999987542 1222333 221 25678999999 766665 5555 4
Q ss_pred EEEee
Q 038537 303 VWRVK 307 (358)
Q Consensus 303 iw~~~ 307 (358)
+|.++
T Consensus 246 ~y~f~ 250 (255)
T 3qqz_A 246 FYRFT 250 (255)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=0.00057 Score=63.82 Aligned_cols=276 Identities=11% Similarity=0.125 Sum_probs=151.0
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeee-------cccceEEEEec-CCEEEEEeCCceEEEEecccccccccccccccCCC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKA-------RHGEVRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~-------h~~~v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
|..|+.++-|..||..+.+....... ....|.++..+ .+.|..|+.+ -+.+||..+.+..........
T Consensus 176 lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~--- 251 (781)
T 3v9f_A 176 LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGN--- 251 (781)
T ss_dssp EEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC----------
T ss_pred EEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCc---
Confidence 34456664588888777654322111 13468888775 3456666665 588888765533211100000
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccccc------------ccccccCeEEEEE
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDS------------FVAHESNVNAIVV 141 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~~v~~~~~ 141 (358)
...-....|.++...++|. |..|+..+-|.++|..+........ .......|.++..
T Consensus 252 ----------~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~ 320 (781)
T 3v9f_A 252 ----------IHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQ 320 (781)
T ss_dssp --------------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEE
T ss_pred ----------cccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEE
Confidence 0011235689998887775 5556664568889987665322111 0113457999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEceecCCcceeee------eecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcC
Q 038537 142 NQDDGFVFTCSSDGSVKIWRRVYRENSHTLTM------TLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSG 215 (358)
Q Consensus 142 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 215 (358)
.+++. |-.|+.++-|..++.....-. .... ........|.++...+ ++ .|..|+.++-|..||..+...
T Consensus 321 D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~d~--~g-~lWigt~~~Gl~~~~~~~~~~ 395 (781)
T 3v9f_A 321 DSFNN-IWIGTWGGGINFISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCDDG--QG-KLWIGTDGGGINVFENGKRVA 395 (781)
T ss_dssp CSSCC-EEEEEBSSCEEEECSSCCSCE-EEC----CCCSSCCSSSCEEEEEECT--TS-CEEEEEBSSCEEEEETTEEEE
T ss_pred eCCCC-EEEEecCCeEEEeCCCCCcce-eeccCccccccCCCCCcceEEEEEcC--CC-CEEEEeCCCcEEEEECCCCeE
Confidence 98887 445666677888886543211 1110 0111235677887764 44 466777666788998765221
Q ss_pred CccccceeecccceeEEEeee-CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEE
Q 038537 216 GFNHGGFLQGHCFAVLCLVAI-EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYS 294 (358)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s 294 (358)
... ..........+.++..+ ...|..|+.++-|..+|..+++. +...........|.++...++ +.+.+.
T Consensus 396 ~~~-~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~--~~~~~~~~~~~~v~~i~~d~~------g~lwig 466 (781)
T 3v9f_A 396 IYN-KENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKF--QIIELEKNELLDVRVFYEDKN------KKIWIG 466 (781)
T ss_dssp ECC------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEE--EECCSTTTCCCCEEEEEECTT------SEEEEE
T ss_pred EEc-cCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcE--EEeccCCCCCCeEEEEEECCC------CCEEEE
Confidence 110 00011223456677665 45566677767799999887632 111100123467889888877 555444
Q ss_pred ccCCCcEEEEEeee
Q 038537 295 SSLDQTFKVWRVKV 308 (358)
Q Consensus 295 ~~~dg~v~iw~~~~ 308 (358)
+. +-|..+|...
T Consensus 467 -t~-~Gl~~~~~~~ 478 (781)
T 3v9f_A 467 -TH-AGVFVIDLAS 478 (781)
T ss_dssp -ET-TEEEEEESSS
T ss_pred -EC-CceEEEeCCC
Confidence 34 4577787654
No 267
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=0.00016 Score=62.29 Aligned_cols=233 Identities=10% Similarity=0.057 Sum_probs=124.4
Q ss_pred CEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecC----C-eEE
Q 038537 40 NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD----K-TVK 114 (358)
Q Consensus 40 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d----g-~i~ 114 (358)
+.|+.+...+.|+.+|+........ .........++++++++.|+.+... . .+.
T Consensus 150 g~Lyv~d~~~~I~~id~~~~~v~~~---------------------~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 150 NHLYLVGEQHPTRLIDFEKEYVSTV---------------------YSGLSKVRTICWTHEADSMIITNDQNNNDRPNNY 208 (430)
T ss_dssp EEEEEEEBTEEEEEEETTTTEEEEE---------------------ECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred CeEEEEeCCCcEEEEECCCCEEEEE---------------------ecCCCCcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence 4555555547777777765432211 1123457899999999966666542 1 233
Q ss_pred EEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCC
Q 038537 115 AWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDN 193 (358)
Q Consensus 115 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 193 (358)
..+ ..+.......+.. ......++++| ++.++++-..++.|..++....... . .... ........++++| ++
T Consensus 209 ~~~-~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-~-~~~~-~~~~~P~gia~~p--dG 281 (430)
T 3tc9_A 209 ILT-RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-P-LFTI-QDSGWEFHIQFHP--SG 281 (430)
T ss_dssp EEE-GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-E-EEEC-SSSSCCEEEEECT--TS
T ss_pred EEe-CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-E-EEEc-CCCCcceeEEEcC--CC
Confidence 344 3333211122221 23457788999 6776666667788999987533211 1 1111 1124567899998 88
Q ss_pred c-EEEEeecCCcEEEEEccCCcCCccccceeec------------------ccceeEEEe--------eeCCEEEEeeCC
Q 038537 194 Y-FLYSGSSDGSINFWEKDKMSGGFNHGGFLQG------------------HCFAVLCLV--------AIEKLIFSGSED 246 (358)
Q Consensus 194 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------------~~~~~~~~~--------~~~~~l~~~~~d 246 (358)
+ ++++-...+.|..++.............+.+ ++....++. .++.+.++=..+
T Consensus 282 ~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n 361 (430)
T 3tc9_A 282 NYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDREN 361 (430)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGG
T ss_pred CEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCC
Confidence 8 4455556788999886642111100000000 111122332 234555555567
Q ss_pred CeEEEEEcCCCceeeeeeee----ecC----------cccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 247 TTIRVWRRAEGGCYHECLAV----LDG----------HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 247 g~i~iwd~~~~~~~~~~~~~----~~~----------h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
+.|+.++. .+.. ...... ..+ .-..-..|++.|+. +.++++-.....|+.++++
T Consensus 362 ~~I~~i~~-~G~v-~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~-----g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 362 HCIRILTP-QGRV-TTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEER-----ECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp TEEEEECT-TSEE-EEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTT-----TEEEEEEGGGTEEEEEEEC
T ss_pred cEEEEECC-CCcE-EEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCC-----CEEEEEECCCCeEEEEccC
Confidence 78888884 3421 111110 001 01246889999831 5677777677788887764
No 268
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.39 E-value=0.00065 Score=57.56 Aligned_cols=220 Identities=11% Similarity=0.001 Sum_probs=120.6
Q ss_pred CCcEEEEeCCCceeeeeeeecccceEEEEec--CCE-EEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCc
Q 038537 8 STRIRVWRQPDCVERGFIKARHGEVRAILAH--DNM-LFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNT 84 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
...|+..++.+......+.. .....++.++ ++. +++-...+.|..++++........
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~------------------- 154 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV------------------- 154 (386)
T ss_dssp BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEE-------------------
T ss_pred CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEE-------------------
Confidence 35678888766554433332 3345677764 344 444456788888888765321110
Q ss_pred cccCCCceEEEEEeCCCCEE-EEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-C-CcEEEEE
Q 038537 85 QQQHRDCVSCMAFYHAEGLL-YTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-D-GSVKIWR 161 (358)
Q Consensus 85 ~~~h~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~~wd 161 (358)
.........+++.+.+..| ++-...+.|.+.++.... ....+...-.....++++|.+..|+.+.. . +.|..++
T Consensus 155 -~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~--~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 155 -STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp -CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS--CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred -eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc--eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 1111234668888755544 444556788888876543 11122223356789999997776666554 3 5677777
Q ss_pred ceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEE
Q 038537 162 RVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIF 241 (358)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 241 (358)
+.... ...+ ....-.....++++| .++.++++-...+.|..+|+..... .........++..+ ++ ..+.+++
T Consensus 232 ~dG~~-~~~~---~~~~~~~PnGlavd~-~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~P~gi-av-~~~~ly~ 303 (386)
T 3v65_B 232 MDGSG-RRII---ADTHLFWPNGLTIDY-AGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAI-TV-FEDSLYW 303 (386)
T ss_dssp TTSCS-CEEE---ECSSCSCEEEEEEEG-GGTEEEEEETTTTEEEEECTTSCSC-EEEECSSCSSEEEE-EE-ETTEEEE
T ss_pred CCCCC-cEEE---EECCCCCeeeEEEeC-CCCEEEEEECCCCEEEEEeCCCCee-EEEEECCCCCceEE-EE-ECCEEEE
Confidence 63221 1111 112234568899997 1344445555567899998764211 11111111222222 22 3345555
Q ss_pred EeeCCCeEEEEEcCCCc
Q 038537 242 SGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 242 ~~~~dg~i~iwd~~~~~ 258 (358)
+-...+.|..++..+++
T Consensus 304 td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 304 TDWHTKSINSANKFTGK 320 (386)
T ss_dssp EETTTTEEEEEETTTCC
T ss_pred eeCCCCeEEEEECCCCc
Confidence 66677889888866663
No 269
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.39 E-value=0.00054 Score=55.83 Aligned_cols=223 Identities=12% Similarity=0.117 Sum_probs=115.7
Q ss_pred CcEEEEeCCCceeeee--eeecccceEEEEecCCEEEEEeCC-----ceEEEEecccccccccccccccCCCceeeeecC
Q 038537 9 TRIRVWRQPDCVERGF--IKARHGEVRAILAHDNMLFTTNKD-----CKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSK 81 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~--~~~h~~~v~~i~~~~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
..+.++|..+.+-... +........++..++..++.|+.+ ..+.+||..+.....-......+.
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~--------- 101 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNV--------- 101 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSS---------
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCC---------
Confidence 3688899877653221 222222233445577777778765 358888887655110001111110
Q ss_pred CCccccCCCceEEEEEeCCCCEEEEEecC-----CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC--
Q 038537 82 SNTQQQHRDCVSCMAFYHAEGLLYTGSFD-----KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD-- 154 (358)
Q Consensus 82 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 154 (358)
....| .++.+ ++.+++.|+.+ ..+.+||+.+.++..+..+.........+.+ ++.+++.|+.+
T Consensus 102 --~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~ 171 (301)
T 2vpj_A 102 --RRGLA----GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGL 171 (301)
T ss_dssp --CCBSC----EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSS
T ss_pred --Cccce----eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCC
Confidence 00111 22222 66777777654 3688999988876655443322222222233 56777777654
Q ss_pred ---CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC-----CcEEEEEccCCcCCccccceeecc
Q 038537 155 ---GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD-----GSINFWEKDKMSGGFNHGGFLQGH 226 (358)
Q Consensus 155 ---g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~ 226 (358)
..+.+||+.+.. ......+..... -.++... ++.+++.|+.+ ..+.+||+.+.. ......+...
T Consensus 172 ~~~~~~~~~d~~~~~--W~~~~~~p~~r~-~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~ 243 (301)
T 2vpj_A 172 NILNSVEKYDPHTGH--WTNVTPMATKRS-GAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDS--WTTVTSMTTP 243 (301)
T ss_dssp CBCCCEEEEETTTTE--EEEECCCSSCCB-SCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE--EEEECCCSSC
T ss_pred cccceEEEEeCCCCc--EEeCCCCCcccc-cceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCc--EEECCCCCCc
Confidence 458888875432 222211111111 1222222 67788888764 468899987632 1111111111
Q ss_pred cceeEEEeeeCCEEEEeeCC-----CeEEEEEcCCCc
Q 038537 227 CFAVLCLVAIEKLIFSGSED-----TTIRVWRRAEGG 258 (358)
Q Consensus 227 ~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 258 (358)
.....+...++.+++.|+.+ ..+.+||..+.+
T Consensus 244 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 244 RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 11222334467777888765 357888988764
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.37 E-value=8.5e-05 Score=68.87 Aligned_cols=196 Identities=12% Similarity=0.041 Sum_probs=110.2
Q ss_pred ceEEEEEe-CCCCEEEEEec-C----CeEEEEEccCC-cccccc-cccccccCeEEEEEcCCCCEEEEEeCC-----CcE
Q 038537 91 CVSCMAFY-HAEGLLYTGSF-D----KTVKAWRVLDK-RCTCVD-SFVAHESNVNAIVVNQDDGFVFTCSSD-----GSV 157 (358)
Q Consensus 91 ~v~~~~~~-~~~~~l~~~~~-d----g~i~iwd~~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i 157 (358)
.+...+|| |||++|+.+.. + ..|+++|+.++ + .+. .+. .....+.|+||++.|+....+ ..|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~--~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQ--TIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTC--CCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCE--eCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 67889999 99998876543 2 25999999988 5 221 111 123467899999888877765 257
Q ss_pred EEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec---CCcEEEEEccCCcCCc--cccceeecccceeEE
Q 038537 158 KIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS---DGSINFWEKDKMSGGF--NHGGFLQGHCFAVLC 232 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~ 232 (358)
.++++.++.....+.... ........+.|+| ++++|+..+. ...|.++|+.+..... ... ..........
T Consensus 250 ~~~~lgt~~~~~~lv~~~-~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l--~~~~~~~~~s 324 (751)
T 2xe4_A 250 WRHVMGKLQSEDVCLYEE-HNPLFSAFMYKAA--DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV--RPREKGVRYD 324 (751)
T ss_dssp EEEETTSCGGGCEEEEEC-CCTTCEEEEEECT--TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES--SCCCTTCCEE
T ss_pred EEEECCCCchhcEEEEec-CCCceEEEEEECC--CCCEEEEEecCCCCceEEEEECCCCCCCceeEEe--ecCCCCceEE
Confidence 777775443222222211 1223455677887 8988877653 3468888887642212 111 1122222233
Q ss_pred Ee-eeCCEEEEee-CC----CeEEEEEcCCCceeeeeeee-ecCccc--ceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 233 LV-AIEKLIFSGS-ED----TTIRVWRRAEGGCYHECLAV-LDGHRG--PVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 233 ~~-~~~~~l~~~~-~d----g~i~iwd~~~~~~~~~~~~~-~~~h~~--~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
.. ..++.|+..+ .+ ..|..+|+.+.. + ... +-.|.. .+..+.+.. +.++++...||..++
T Consensus 325 ~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~---~-~~~~li~~~~~~~l~~~~~~~-------~~lv~~~~~~g~~~l 393 (751)
T 2xe4_A 325 VQMHGTSHLVILTNEGGAVNHKLLIAPRGQPS---D-WSHVLVDHSEDVFMESIAVRS-------NYLVVAGRRAGLTRI 393 (751)
T ss_dssp EEEETTTEEEEEECTTTCTTCEEEEEETTSTT---C-CCCEEECCCSSEEEEEEEECS-------SEEEEEEEETTEEEE
T ss_pred EeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcc---c-ceeeEECCCCCcEEEEEEEEC-------CEEEEEEEeCCEEEE
Confidence 33 2355554433 32 367777776421 1 111 222333 445555542 467788888887666
Q ss_pred EEee
Q 038537 304 WRVK 307 (358)
Q Consensus 304 w~~~ 307 (358)
|-+.
T Consensus 394 ~~~d 397 (751)
T 2xe4_A 394 WTMM 397 (751)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6554
No 271
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.33 E-value=0.00064 Score=58.51 Aligned_cols=238 Identities=8% Similarity=-0.000 Sum_probs=123.9
Q ss_pred EEEecC----CEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec
Q 038537 34 AILAHD----NMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF 109 (358)
Q Consensus 34 ~i~~~~----~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 109 (358)
.++++. ..|+.+...+.|+.++..++..... .........++++++++ |+.+..
T Consensus 143 gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~---------------------~~~~~~P~giavd~dG~-lyVad~ 200 (433)
T 4hw6_A 143 RMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK---------------------TTNIGQCADVNFTLNGD-MVVVDD 200 (433)
T ss_dssp EEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE---------------------CCCCSCEEEEEECTTCC-EEEEEC
T ss_pred eEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe---------------------ecCCCCccEEEECCCCC-EEEEcC
Confidence 455542 4555554446777777755433211 12234578999999999 444443
Q ss_pred CC-----eEEEEEccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCcee
Q 038537 110 DK-----TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVN 183 (358)
Q Consensus 110 dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~ 183 (358)
.+ .+...+.. +.......+. .-.....++++| ++.+.++-..++.|+.+|..++.....+. .. .......
T Consensus 201 ~~~~~~~gv~~~~~~-~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~-~~-~~~~~~~ 276 (433)
T 4hw6_A 201 QSSDTNTGIYLFTRA-SGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEV-MM-DTKGSNF 276 (433)
T ss_dssp CSCTTSEEEEEECGG-GTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEE-EC-SCCSSCE
T ss_pred CCCcccceEEEEECC-CCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEe-cc-CCCCCcc
Confidence 21 23333322 2111001111 223456788999 66666665567889888875333211111 11 1122234
Q ss_pred EEEEeecCCCcE-EEEeecCCcEEEEEccCCcCCccccceeecc-----------------cceeEEE---------eee
Q 038537 184 ALALSSFFDNYF-LYSGSSDGSINFWEKDKMSGGFNHGGFLQGH-----------------CFAVLCL---------VAI 236 (358)
Q Consensus 184 ~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----------------~~~~~~~---------~~~ 236 (358)
.++++| +++. +++-...+.|..+++............+.+. ...-.++ ..+
T Consensus 277 ~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~ 354 (433)
T 4hw6_A 277 HIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE 354 (433)
T ss_dssp EEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC
T ss_pred cEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC
Confidence 689998 8884 4455557889998865321111100001110 0111455 445
Q ss_pred CCEEEEeeCCCeEEEEEcCCCceeeeeeeee----cC----------cccceEEEEee-cccceeeeCeEEEEccCCCcE
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCYHECLAVL----DG----------HRGPVRCLAAS-LEMEKVVMGFLVYSSSLDQTF 301 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~----------h~~~v~~i~~~-~~~~~~~~~~~l~s~~~dg~v 301 (358)
++++++-..++.|+.++. .+.. ......- .+ .-.....|++. ++ +.++++=...+.|
T Consensus 355 g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~------g~lyVaD~~n~rI 426 (433)
T 4hw6_A 355 YDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKR------KCFYIGDCDNHRV 426 (433)
T ss_dssp EEEEEEETTTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTT------TEEEEEEGGGTEE
T ss_pred CcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCC------CEEEEEeCCCCEE
Confidence 666666667788998885 3321 0111000 00 11236789999 55 6777777777888
Q ss_pred EEEEee
Q 038537 302 KVWRVK 307 (358)
Q Consensus 302 ~iw~~~ 307 (358)
+..+++
T Consensus 427 r~i~~e 432 (433)
T 4hw6_A 427 RKIAPE 432 (433)
T ss_dssp EEEEEC
T ss_pred EEEecC
Confidence 888764
No 272
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.32 E-value=0.0008 Score=54.97 Aligned_cols=228 Identities=7% Similarity=0.071 Sum_probs=120.0
Q ss_pred EEeeeC--CCcEEEEeCCCceeee--eeeecccceEEEEecCCEEEEEeCC----ceEEEEecccccccccccccccCCC
Q 038537 2 VFTGSS--STRIRVWRQPDCVERG--FIKARHGEVRAILAHDNMLFTTNKD----CKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 2 l~tg~~--dg~v~vw~~~~~~~~~--~~~~h~~~v~~i~~~~~~l~s~~~d----g~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
++.|+. ...+.+||..+.+-.. .+........++..++..++.|+.+ ..+.+||..+.+-.... ..+.
T Consensus 15 ~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~---~~p~- 90 (306)
T 3ii7_A 15 IALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKL---GPPT- 90 (306)
T ss_dssp EEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEE---CCSS-
T ss_pred EEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECC---CCCc-
Confidence 445554 3568889987765322 2222222333445577777788755 56778887765422111 1110
Q ss_pred ceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecC------CeEEEEEccCCcccccccccccccCeEEEEEcCCCCE
Q 038537 74 SSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGF 147 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 147 (358)
....| ..+.+ ++.+++.|+.+ ..+.+||..+.++..+..+.........+.+ ++.+
T Consensus 91 ----------~r~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 152 (306)
T 3ii7_A 91 ----------PRDSL----AACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLI 152 (306)
T ss_dssp ----------CCBSC----EEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEE
T ss_pred ----------cccce----eEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEE
Confidence 00112 22222 67777888765 4688999988876555444322222222333 5666
Q ss_pred EEEEeC---------CCcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC-----CcEEEEEccCC
Q 038537 148 VFTCSS---------DGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD-----GSINFWEKDKM 213 (358)
Q Consensus 148 l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 213 (358)
++.|+. -..+.+||+.+.. +.....+.... .-.++... ++.+++.|+.+ ..+.+||+.+.
T Consensus 153 yv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r-~~~~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 153 YVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEAR-KNHGLVFV---KDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp EEECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCC-BSCEEEEE---TTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred EEECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchh-hcceEEEE---CCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 666654 3457888875442 22221111111 11222222 67778887754 35888998763
Q ss_pred cCCccccceeecccceeEEEeeeCCEEEEeeCC-----CeEEEEEcCCCce
Q 038537 214 SGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSED-----TTIRVWRRAEGGC 259 (358)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 259 (358)
. ......+........+...++.+++.|+.+ ..+.+||..+.+.
T Consensus 227 ~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 227 E--WKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp E--EEECCCCSCCBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred c--EEECCCCCCCccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 2 222111111111223333467788888754 5688899988753
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.25 E-value=0.00046 Score=56.46 Aligned_cols=200 Identities=14% Similarity=0.052 Sum_probs=112.5
Q ss_pred CceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC--cEEEEEceecCC
Q 038537 90 DCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG--SVKIWRRVYREN 167 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~ 167 (358)
.....++|+++++++++-..++.|..+|..... ...+ ........+++.++++++++..... .|..+|..+++.
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~---~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~ 107 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ---QIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV 107 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE---EEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce---EEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence 456789999999876766678999999976542 2222 2235688999999999666554433 365666544331
Q ss_pred cceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcc-----cc-ceeecccceeEEEeeeCCEEE
Q 038537 168 SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFN-----HG-GFLQGHCFAVLCLVAIEKLIF 241 (358)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~l~ 241 (358)
..+ .... .......++..+ ++..+++-..++.|+.+|......... .. ......-.....++++++.|+
T Consensus 108 -~~~-~~~~-~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~ly 182 (306)
T 2p4o_A 108 -ETL-LTLP-DAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLY 182 (306)
T ss_dssp -EEE-EECT-TCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred -EEE-EeCC-CccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEE
Confidence 111 1111 112223444433 444444444588899988764210000 00 000011112233478887655
Q ss_pred E-eeCCCeEEEEEcCC-CceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 242 S-GSEDTTIRVWRRAE-GGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 242 ~-~~~dg~i~iwd~~~-~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
. -...+.|..|++.. +.. .....+.. ......|++.++ |.++++....+.|.+++..
T Consensus 183 v~d~~~~~I~~~~~~~~g~~--~~~~~~~~-~~~P~gi~vd~d------G~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 183 VSNTEKMLLLRIPVDSTDKP--GEPEIFVE-QTNIDDFAFDVE------GNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEETTTTEEEEEEBCTTSCB--CCCEEEEE-SCCCSSEEEBTT------CCEEEECBTTCCEEEECTT
T ss_pred EEeCCCCEEEEEEeCCCCCC--CccEEEec-cCCCCCeEECCC------CCEEEEeCCCCeEEEECCC
Confidence 4 45678999999875 321 11111111 123567889998 7788877777889888743
No 274
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.25 E-value=0.00091 Score=52.63 Aligned_cols=205 Identities=10% Similarity=0.095 Sum_probs=122.2
Q ss_pred eeecccceEEEEec--CC-EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCC
Q 038537 25 IKARHGEVRAILAH--DN-MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAE 101 (358)
Q Consensus 25 ~~~h~~~v~~i~~~--~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 101 (358)
+.+-...+..++++ ++ ++++...++.|...|.. ++..+.... .+ ....-.|++.+++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l------------------~g-~~D~EGIa~~~~g 81 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL------------------DF-VKDLETIEYIGDN 81 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC------------------SS-CSSEEEEEECSTT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec------------------CC-CCChHHeEEeCCC
Confidence 33445678888885 44 44556778899999987 554433221 11 1346778888888
Q ss_pred CEEEEEecCCeEEEEEccCCcc-cccccc------cccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCc--ceee
Q 038537 102 GLLYTGSFDKTVKAWRVLDKRC-TCVDSF------VAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENS--HTLT 172 (358)
Q Consensus 102 ~~l~~~~~dg~i~iwd~~~~~~-~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~ 172 (358)
.++++.-.++.+.++++..... ..+... ...+.....|+|+|.++.|.++.+.....+|.+...... ....
T Consensus 82 ~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~ 161 (255)
T 3qqz_A 82 QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHIS 161 (255)
T ss_dssp EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEE
T ss_pred EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeee
Confidence 7767665678888888765431 011111 123456789999999988888887777777776511010 1111
Q ss_pred ee----ecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceee-c--------ccceeEEEeeeCCE
Q 038537 173 MT----LKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQ-G--------HCFAVLCLVAIEKL 239 (358)
Q Consensus 173 ~~----~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~ 239 (358)
.. .......+..++++| ..+.+++.....+.+..+|..... ... ..+. + ....=+++.++|++
T Consensus 162 ~~~~~~~~~~~~d~S~l~~dp-~tg~lliLS~~s~~L~~~d~~g~~--~~~-~~L~~g~~~l~~~~~qpEGia~d~~G~l 237 (255)
T 3qqz_A 162 KDKALQRQFTLDDVSGAEFNQ-QKNTLLVLSHESRALQEVTLVGEV--IGE-MSLTKGSRGLSHNIKQAEGVAMDASGNI 237 (255)
T ss_dssp ECHHHHHTCCSSCCCEEEEET-TTTEEEEEETTTTEEEEECTTCCE--EEE-EECSTTGGGCSSCCCSEEEEEECTTCCE
T ss_pred cchhhccccccCCceeEEEcC-CCCeEEEEECCCCeEEEEcCCCCE--EEE-EEcCCccCCcccccCCCCeeEECCCCCE
Confidence 00 011234678999998 456677777778888889876521 111 1111 1 11233677888875
Q ss_pred EEEeeCCCeEEEEEc
Q 038537 240 IFSGSEDTTIRVWRR 254 (358)
Q Consensus 240 l~~~~~dg~i~iwd~ 254 (358)
.++ ++-+.++.|.-
T Consensus 238 yIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 238 YIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEE-ETTTEEEEEEC
T ss_pred EEE-cCCceEEEEEe
Confidence 555 66666666644
No 275
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.25 E-value=0.0011 Score=53.95 Aligned_cols=227 Identities=11% Similarity=0.141 Sum_probs=116.3
Q ss_pred EEeeeCC----CcEEEEeCCCceeeee--eeecccceEEEEecCCEEEEEeCCc-----eEEEEeccccccccccccccc
Q 038537 2 VFTGSSS----TRIRVWRQPDCVERGF--IKARHGEVRAILAHDNMLFTTNKDC-----KIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 2 l~tg~~d----g~v~vw~~~~~~~~~~--~~~h~~~v~~i~~~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~~~~ 70 (358)
++.|+.+ ..+..+|..+.+-... +......-.++..++..++.|+.++ .+.+||..+.+-.... ..
T Consensus 19 ~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~---~~ 95 (302)
T 2xn4_A 19 VVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA---NM 95 (302)
T ss_dssp EEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC---CC
T ss_pred EEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCC---CC
Confidence 3455543 3578888877653222 1111112223445677777777553 4777777654322111 11
Q ss_pred CCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCC-----eEEEEEccCCcccccccccccccCeEEEEEcCCC
Q 038537 71 PRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDK-----TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD 145 (358)
Q Consensus 71 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 145 (358)
+. ....| .++.+ ++.+++.|+.++ .+.+||+.+.++..+..+.........+.+ ++
T Consensus 96 p~-----------~r~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~ 156 (302)
T 2xn4_A 96 RD-----------RRSTL----GAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GG 156 (302)
T ss_dssp SS-----------CCBSC----EEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT
T ss_pred Cc-----------cccce----EEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CC
Confidence 10 00112 22222 667777777653 578899988876655444332222223333 56
Q ss_pred CEEEEEeCC-------CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC-----CcEEEEEccCC
Q 038537 146 GFVFTCSSD-------GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD-----GSINFWEKDKM 213 (358)
Q Consensus 146 ~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 213 (358)
.+++.|+.+ ..+.+||+.+.. +.....+...... .++... ++.+++.|+.+ ..+.+||+.+.
T Consensus 157 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 157 LLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSG-AGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp EEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBS-CEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred EEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCcccccc-ccEEEE---CCEEEEECCCCCCcccceEEEEeCCCC
Confidence 666766543 357888875432 2222111111111 222222 67888888764 36889998763
Q ss_pred cCCccccceeecccceeEEEeeeCCEEEEeeCCC-----eEEEEEcCCCc
Q 038537 214 SGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDT-----TIRVWRRAEGG 258 (358)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~ 258 (358)
. ......+........+...++.+++.|+.++ .+.+||..+.+
T Consensus 231 ~--W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 231 A--WRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp E--EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred C--EeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 2 1111111111111223344677888887654 48899998874
No 276
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=98.24 E-value=0.001 Score=54.22 Aligned_cols=189 Identities=15% Similarity=0.182 Sum_probs=100.2
Q ss_pred CCCEEEEEecC-----CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEceecCCcc
Q 038537 100 AEGLLYTGSFD-----KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG-----SVKIWRRVYRENSH 169 (358)
Q Consensus 100 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~ 169 (358)
++.+++.|+.+ ..+.+||..+.++..+..+.........+.+ ++.+++.|+.++ .+.+||+.+.. .
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE--W 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE--E
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe--E
Confidence 66777777755 3588999988876665544332222223333 567777777654 46677765332 2
Q ss_pred eeeeeecccCCceeEEEEeecCCCcEEEEeecC-------CcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEE
Q 038537 170 TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD-------GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFS 242 (358)
Q Consensus 170 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (358)
.....+..... -.+++.. ++.+++.|+.+ ..+.+||+.+.. ......+........+...++.+++.
T Consensus 137 ~~~~~~p~~r~-~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iyv~ 210 (302)
T 2xn4_A 137 FHVAPMNTRRS-SVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVLNNLLYAV 210 (302)
T ss_dssp EEECCCSSCCB-SCEEEEE---TTEEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEE
T ss_pred eecCCCCCccc-CceEEEE---CCEEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEECCEEEEE
Confidence 22222211111 1222222 67777777653 348889987632 11111111111112233446778888
Q ss_pred eeCC-----CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCC-----cEEEEEeee
Q 038537 243 GSED-----TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQ-----TFKVWRVKV 308 (358)
Q Consensus 243 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg-----~v~iw~~~~ 308 (358)
|+.+ ..+.+||..+.+. ..+..+......-..+.+ + +.+++.|+.++ .+.+||+..
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~W--~~~~~~~~~r~~~~~~~~--~------~~i~v~GG~~~~~~~~~v~~yd~~~ 276 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNAW--RQVADMNMCRRNAGVCAV--N------GLLYVVGGDDGSCNLASVEYYNPTT 276 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEE--T------TEEEEECCBCSSSBCCCEEEEETTT
T ss_pred CCCCCCcccceEEEEeCCCCCE--eeCCCCCCccccCeEEEE--C------CEEEEECCcCCCcccccEEEEcCCC
Confidence 8764 3689999988753 333333221111122222 3 67888888664 377777653
No 277
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.24 E-value=0.0016 Score=55.12 Aligned_cols=196 Identities=10% Similarity=-0.007 Sum_probs=110.9
Q ss_pred CceEEEEEeCCCCEEEEE-ecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEE-EEeCCCcEEEEEceecCC
Q 038537 90 DCVSCMAFYHAEGLLYTG-SFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVF-TCSSDGSVKIWRRVYREN 167 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~ 167 (358)
..+..++|++.+..|+.. ...+.|..+++....... .+.........+++++.+..|+ +-...+.|.+.++....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~--~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~- 192 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE--VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH- 192 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE--EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS-
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE--EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc-
Confidence 347899999765555544 456889999987664211 1222223456788887555554 44456778887764322
Q ss_pred cceeeeeecccCCceeEEEEeecCCCcEEE-EeecC-CcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEE-Eee
Q 038537 168 SHTLTMTLKFQQSSVNALALSSFFDNYFLY-SGSSD-GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIF-SGS 244 (358)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~ 244 (358)
.. ............+++.| .+..|+ +-... +.|..+++..... ..... .......-+++++++..|+ +-.
T Consensus 193 ~~---~l~~~~l~~P~giavdp--~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~-~~~~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 193 RK---VLLWQSLEKPRAIALHP--MEGTIYWTDWGNTPRIEASSMDGSGR-RIIAD-THLFWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp CE---EEECSSCSCEEEEEEET--TTTEEEEEECSSSCEEEEEETTSCSC-EEEEC-SSCSCEEEEEEEGGGTEEEEEET
T ss_pred eE---EeecCCCCCCcEEEEEc--CCCeEEEeccCCCCEEEEEeCCCCCc-EEEEE-CCCCCeeeEEEeCCCCEEEEEEC
Confidence 11 11122235678899987 554444 44344 6788888764211 11100 0011122356676555554 444
Q ss_pred CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 245 EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
..+.|..+|+.... ....+........+|++. . +.++++-...+.|..++.
T Consensus 266 ~~~~I~~~d~dG~~----~~~~~~~~~~~P~giav~-~------~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 266 KHHVIERANLDGSH----RKAVISQGLPHPFAITVF-E------DSLYWTDWHTKSINSANK 316 (386)
T ss_dssp TTTEEEEECTTSCS----CEEEECSSCSSEEEEEEE-T------TEEEEEETTTTEEEEEET
T ss_pred CCCEEEEEeCCCCe----eEEEEECCCCCceEEEEE-C------CEEEEeeCCCCeEEEEEC
Confidence 66789999987542 122222233455778873 3 567777777788887774
No 278
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=98.24 E-value=0.001 Score=54.14 Aligned_cols=188 Identities=11% Similarity=0.143 Sum_probs=99.8
Q ss_pred CCCEEEEEecC-----CeEEEEEccCCc---ccccccccccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEceecC
Q 038537 100 AEGLLYTGSFD-----KTVKAWRVLDKR---CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG-----SVKIWRRVYRE 166 (358)
Q Consensus 100 ~~~~l~~~~~d-----g~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~ 166 (358)
++.+++.|+.+ ..+.+||+.+.+ +..+..+.........+.+ ++.+++.|+.++ .+.+||+.+..
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 56777777765 468999998877 6555444332222223333 567777776543 57788875432
Q ss_pred CcceeeeeecccCCceeEEEEeecCCCcEEEEeecC-----CcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEE
Q 038537 167 NSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD-----GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIF 241 (358)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 241 (358)
........... .-.+++.. ++.+++.|+.+ ..+.+||+.+.. ......+........+...++.+++
T Consensus 140 --W~~~~~~p~~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v 211 (301)
T 2vpj_A 140 --WSMLGDMQTAR-EGAGLVVA---SGVIYCLGGYDGLNILNSVEKYDPHTGH--WTNVTPMATKRSGAGVALLNDHIYV 211 (301)
T ss_dssp --EEEEEECSSCC-BSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEE
T ss_pred --EEECCCCCCCc-ccceEEEE---CCEEEEECCCCCCcccceEEEEeCCCCc--EEeCCCCCcccccceEEEECCEEEE
Confidence 22222221111 11222222 67788887765 458889987632 1111111111112233344677778
Q ss_pred EeeCC-----CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCC-----cEEEEEee
Q 038537 242 SGSED-----TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQ-----TFKVWRVK 307 (358)
Q Consensus 242 ~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg-----~v~iw~~~ 307 (358)
.|+.+ ..+.+||+.+.+. ..+..+.........+.+ + +++++.|+.++ .+.+||++
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~------~~i~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSW--TTVTSMTTPRCYVGATVL--R------GRLYAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEE--T------TEEEEECCBCSSSBEEEEEEEETT
T ss_pred EeCCCCCcccceEEEEeCCCCcE--EECCCCCCcccceeEEEE--C------CEEEEEcCcCCCcccccEEEEcCC
Confidence 88764 4689999988753 333333222222222222 3 57888888663 45566654
No 279
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.21 E-value=0.0017 Score=54.10 Aligned_cols=196 Identities=9% Similarity=-0.018 Sum_probs=112.2
Q ss_pred CceEEEEEeCCCCEEEEE-ecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEE-EEEeCCCcEEEEEceecCC
Q 038537 90 DCVSCMAFYHAEGLLYTG-SFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFV-FTCSSDGSVKIWRRVYREN 167 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~ 167 (358)
..+..++|++.+..|+.. ...+.|..+++....... ...........+++++.+..| ++-...+.|.+.++.....
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~--~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~ 150 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE--VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 150 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceE--EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence 347899999766655554 456889999987665211 122222345788998755544 4545567899888753221
Q ss_pred cceeeeeecccCCceeEEEEeecCCCc-EEEEeecC-CcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEE-ee
Q 038537 168 SHTLTMTLKFQQSSVNALALSSFFDNY-FLYSGSSD-GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFS-GS 244 (358)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 244 (358)
. ......-.....+++.| .+. ++++-... +.|..+++..... ..... .......-+++++++..|+. -.
T Consensus 151 -~---~l~~~~l~~P~~iavdp--~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~-~~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 151 -K---VLLWQSLEKPRAIALHP--MEGTIYWTDWGNTPRIEASSMDGSGR-RIIAD-THLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp -E---EEECTTCSCEEEEEEET--TTTEEEEEECSSSCEEEEEETTSCSC-EESCC-SSCSCEEEEEEETTTTEEEEEET
T ss_pred -E---EEEeCCCCCcceEEEec--CcCeEEEeccCCCCEEEEEeCCCCCc-EEEEE-CCCCCcceEEEeCCCCEEEEEEC
Confidence 1 11122235578899987 444 44444444 7788888764211 11110 01111223566765555554 44
Q ss_pred CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEe
Q 038537 245 EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRV 306 (358)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~ 306 (358)
..+.|..+|+..... ...+........+|++. . +.++++-...+.|...+.
T Consensus 223 ~~~~I~~~~~dG~~~----~~~~~~~~~~P~giav~-~------~~ly~td~~~~~V~~~~~ 273 (349)
T 3v64_C 223 KHHVIERANLDGSHR----KAVISQGLPHPFAITVF-E------DSLYWTDWHTKSINSANK 273 (349)
T ss_dssp TTTEEEEEETTSCSC----EEEECSSCSSEEEEEEE-T------TEEEEEETTTTEEEEEET
T ss_pred CCCEEEEEeCCCCce----EEEEeCCCCCceEEEEE-C------CEEEEecCCCCeEEEEEc
Confidence 667899999875421 11222233455777773 3 567777767777777763
No 280
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=98.14 E-value=0.002 Score=52.51 Aligned_cols=189 Identities=7% Similarity=0.073 Sum_probs=100.9
Q ss_pred CCCEEEEEecC----CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC------CcEEEEEceecCCcc
Q 038537 100 AEGLLYTGSFD----KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD------GSVKIWRRVYRENSH 169 (358)
Q Consensus 100 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~ 169 (358)
++.+++.|+.+ ..+.+||..+.++..+..+.........+.+ ++.+++.|+.+ ..+.+||+.+.. +
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~--W 130 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES--W 130 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE--E
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc--e
Confidence 66777788755 6788999998876555444322222223333 56777777765 458888875432 2
Q ss_pred eeeeeecccCCceeEEEEeecCCCcEEEEeec---------CCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEE
Q 038537 170 TLTMTLKFQQSSVNALALSSFFDNYFLYSGSS---------DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLI 240 (358)
Q Consensus 170 ~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (358)
.....+.... .-.+++.. ++.+++.|+. -..+.+||+.+.. ......+........+...++.++
T Consensus 131 ~~~~~~p~~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~ 204 (306)
T 3ii7_A 131 HTKPSMLTQR-CSHGMVEA---NGLIYVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFVKDKIF 204 (306)
T ss_dssp EEECCCSSCC-BSCEEEEE---TTEEEEECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEE
T ss_pred EeCCCCcCCc-ceeEEEEE---CCEEEEECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEEECCEEE
Confidence 2221111111 11122222 6777777764 3458889987732 111111111111122333466777
Q ss_pred EEeeCC-----CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC-----CcEEEEEeee
Q 038537 241 FSGSED-----TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD-----QTFKVWRVKV 308 (358)
Q Consensus 241 ~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d-----g~v~iw~~~~ 308 (358)
+.|+.+ ..+.+||+.+.+. +.+..+.........+.+ + +.+++.|+.+ ..+.+||+..
T Consensus 205 v~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~------~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 205 AVGGQNGLGGLDNVEYYDIKLNEW--KMVSPMPWKGVTVKCAAV--G------SIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp EECCEETTEEBCCEEEEETTTTEE--EECCCCSCCBSCCEEEEE--T------TEEEEEECBCSSSBCCEEEEEETTT
T ss_pred EEeCCCCCCCCceEEEeeCCCCcE--EECCCCCCCccceeEEEE--C------CEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 777754 3588999988753 333333322222233333 3 5788888855 3466676653
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.14 E-value=0.00025 Score=65.72 Aligned_cols=193 Identities=7% Similarity=0.002 Sum_probs=102.5
Q ss_pred EEE-ecCCEEEEEe-CC----ceEEEEecccc-cccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEE
Q 038537 34 AIL-AHDNMLFTTN-KD----CKIRIWNFTVS-DNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYT 106 (358)
Q Consensus 34 ~i~-~~~~~l~s~~-~d----g~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 106 (358)
+++ +++++|+-+. .+ ..|+++|+.++ +.+.. .+. .....++|+|+++.|+.
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------------------~~~---~~~~~~~WspDg~~l~y 237 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------------------KVS---GTNGEIVWGPDHTSLFY 237 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------------------CEE---EECSCCEECSSTTEEEE
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------------------ccc---CceeeEEEecCCCEEEE
Confidence 456 6777776443 23 35999999887 52210 001 11346889999988877
Q ss_pred EecC-----CeEEEEEccCCccccccccc-ccccCeEEEEEcCCCCEEEEEeC---CCcEEEEEceecCCcceeeeeecc
Q 038537 107 GSFD-----KTVKAWRVLDKRCTCVDSFV-AHESNVNAIVVNQDDGFVFTCSS---DGSVKIWRRVYRENSHTLTMTLKF 177 (358)
Q Consensus 107 ~~~d-----g~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~ 177 (358)
...+ ..|.++++.++.......+. ........+.|+||+++|+..+. ...|.++|+.++............
T Consensus 238 ~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~ 317 (751)
T 2xe4_A 238 VTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR 317 (751)
T ss_dssp EEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC
T ss_pred EEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC
Confidence 7665 36888888766422122222 22344678899999998887653 346788887654211100111122
Q ss_pred cCCceeEEEEeecCCCcEE-EEeecC--C--cEEEEEccCCcCCccccc-eeec-ccceeEEEeeeCCE-EEEeeCCCe-
Q 038537 178 QQSSVNALALSSFFDNYFL-YSGSSD--G--SINFWEKDKMSGGFNHGG-FLQG-HCFAVLCLVAIEKL-IFSGSEDTT- 248 (358)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~l-~~~~~d--g--~i~i~d~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~-l~~~~~dg~- 248 (358)
.......+.|. .+..| +....+ + .|..+|+..... . .. .+.. ....+..+.+.++. +++...+|.
T Consensus 318 ~~~~~~s~~~~---~g~~l~~~t~~~~a~~~~L~~~d~~~~~~-~--~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~ 391 (751)
T 2xe4_A 318 EKGVRYDVQMH---GTSHLVILTNEGGAVNHKLLIAPRGQPSD-W--SHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLT 391 (751)
T ss_dssp CTTCCEEEEEE---TTTEEEEEECTTTCTTCEEEEEETTSTTC-C--CCEEECCCSSEEEEEEEECSSEEEEEEEETTEE
T ss_pred CCCceEEEeee---eCCEEEEEeCCCCCCCcEEEEEcCCCccc-c--eeeEECCCCCcEEEEEEEECCEEEEEEEeCCEE
Confidence 23344444443 34444 444333 2 566666653211 1 11 1111 12244556665554 455667775
Q ss_pred -EEEEEc
Q 038537 249 -IRVWRR 254 (358)
Q Consensus 249 -i~iwd~ 254 (358)
|.++++
T Consensus 392 ~l~~~dl 398 (751)
T 2xe4_A 392 RIWTMMA 398 (751)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 455564
No 282
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.14 E-value=0.0025 Score=53.16 Aligned_cols=218 Identities=11% Similarity=0.007 Sum_probs=118.7
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEEec--CCEEE-EEeCCceEEEEecccccccccccccccCCCceeeeecCCCcc
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAILAH--DNMLF-TTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQ 85 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (358)
..|+..++........+.. .....++.++ ++.|+ +-...+.|..++++........
T Consensus 53 ~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~-------------------- 111 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV-------------------- 111 (349)
T ss_dssp SCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE--------------------
T ss_pred cceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE--------------------
Confidence 4577777765544333332 2345667664 34444 4456778888888755321100
Q ss_pred ccCCCceEEEEEeCCCCEE-EEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-C-CcEEEEEc
Q 038537 86 QQHRDCVSCMAFYHAEGLL-YTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-D-GSVKIWRR 162 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~~wd~ 162 (358)
.........+++.+.+..| ++-...+.|.+.++.... ....+...-.....++++|.+..|+.+.. . +.|..+++
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS--CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc--eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 1112235678888755544 555556789999987544 11112223345789999996666655544 3 67777776
Q ss_pred eecCCcceeeeeecccCCceeEEEEeecCCCcEE-EEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEE
Q 038537 163 VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFL-YSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIF 241 (358)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 241 (358)
.... ...+ ....-.....++++| ++..| ++-...+.|..+|+..... .........++..+ ++ ..+.+++
T Consensus 190 dG~~-~~~~---~~~~~~~PnGla~d~--~~~~lY~aD~~~~~I~~~~~dG~~~-~~~~~~~~~~P~gi-av-~~~~ly~ 260 (349)
T 3v64_C 190 DGSG-RRII---ADTHLFWPNGLTIDY--AGRRMYWVDAKHHVIERANLDGSHR-KAVISQGLPHPFAI-TV-FEDSLYW 260 (349)
T ss_dssp TSCS-CEES---CCSSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEE-EE-ETTEEEE
T ss_pred CCCC-cEEE---EECCCCCcceEEEeC--CCCEEEEEECCCCEEEEEeCCCCce-EEEEeCCCCCceEE-EE-ECCEEEE
Confidence 4221 1111 111234568899997 45444 4445567899999865211 11111111222222 22 3344555
Q ss_pred EeeCCCeEEEEEcCCCc
Q 038537 242 SGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 242 ~~~~dg~i~iwd~~~~~ 258 (358)
+-...+.|..++..+++
T Consensus 261 td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 261 TDWHTKSINSANKFTGK 277 (349)
T ss_dssp EETTTTEEEEEETTTCC
T ss_pred ecCCCCeEEEEEccCCC
Confidence 55567888888866663
No 283
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.14 E-value=0.0022 Score=52.60 Aligned_cols=220 Identities=12% Similarity=0.066 Sum_probs=123.0
Q ss_pred CCcEEEEeCCCce-eeeeeeecccceEEEEec---CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCC
Q 038537 8 STRIRVWRQPDCV-ERGFIKARHGEVRAILAH---DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSN 83 (358)
Q Consensus 8 dg~v~vw~~~~~~-~~~~~~~h~~~v~~i~~~---~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (358)
...|+..++.... ....+........++.++ +.++++-...+.|..++++........
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~------------------ 73 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNV------------------ 73 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEE------------------
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEE------------------
Confidence 4678999987653 112222222345567664 345555556788988888765321100
Q ss_pred ccccCCCceEEEEEeCCCC-EEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC--CCcEEEE
Q 038537 84 TQQQHRDCVSCMAFYHAEG-LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS--DGSVKIW 160 (358)
Q Consensus 84 ~~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~w 160 (358)
+...-.....+++.+.+. +.++-...+.|.++++..... .............++++|.+..|+.+.. .+.|...
T Consensus 74 -~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~ 150 (318)
T 3sov_A 74 -VVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR--KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERA 150 (318)
T ss_dssp -EEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEE
T ss_pred -EcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEE
Confidence 011123456788887554 445545668899999875431 1112233456789999997666666653 4677777
Q ss_pred EceecCCcceeeeeecccCCceeEEEEeecCCCcEEE-EeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeC-C
Q 038537 161 RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLY-SGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE-K 238 (358)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 238 (358)
++.... ...+ ....-.....+++++ ++..|+ +-...+.|..+|+..... ... ..+.......+..++ .
T Consensus 151 ~~dG~~-~~~~---~~~~l~~Pnglavd~--~~~~lY~aD~~~~~I~~~d~dG~~~-~~~---~~~~~~~P~glav~~~~ 220 (318)
T 3sov_A 151 GMDGSS-RFII---INSEIYWPNGLTLDY--EEQKLYWADAKLNFIHKSNLDGTNR-QAV---VKGSLPHPFALTLFEDI 220 (318)
T ss_dssp ETTSCS-CEEE---ECSSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSC-EEE---ECSCCSCEEEEEEETTE
T ss_pred EcCCCC-eEEE---EECCCCCccEEEEec--cCCEEEEEECCCCEEEEEcCCCCce-EEE---ecCCCCCceEEEEeCCE
Confidence 763221 1111 111234568899997 555554 445577899999864211 111 111112223333344 4
Q ss_pred EEEEeeCCCeEEEEEcCCCc
Q 038537 239 LIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 239 ~l~~~~~dg~i~iwd~~~~~ 258 (358)
++++-...+.|..++..+++
T Consensus 221 lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 221 LYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEecCCCeEEEEECCCCC
Confidence 55555577889999987774
No 284
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.09 E-value=0.0027 Score=51.92 Aligned_cols=188 Identities=11% Similarity=0.122 Sum_probs=98.5
Q ss_pred CCCEEEEEec----C-----CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEEceec
Q 038537 100 AEGLLYTGSF----D-----KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD-----GSVKIWRRVYR 165 (358)
Q Consensus 100 ~~~~l~~~~~----d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~ 165 (358)
++.+++.|+. + ..+.+||+.+.++..+..+.........+.+ ++.+++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 6677777776 2 3688999988876655544332222233333 56677776643 35778887543
Q ss_pred CCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC-----CcEEEEEccCCcCCccccceeecccceeEEEeeeCCEE
Q 038537 166 ENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD-----GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLI 240 (358)
Q Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (358)
. ......+...... .+++.. ++.+++.|+.+ ..+.+||+.+.. ......+........+...++.++
T Consensus 148 ~--W~~~~~~p~~r~~-~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~iy 219 (308)
T 1zgk_A 148 E--WHLVAPMLTRRIG-VGVAVL---NRLLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVLHNCIY 219 (308)
T ss_dssp E--EEECCCCSSCCBS-CEEEEE---TTEEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEETTEEE
T ss_pred e--EeECCCCCccccc-eEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEECCEEE
Confidence 2 2221111111111 122222 67788887764 458889987632 111111111111122333467777
Q ss_pred EEeeCC-----CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCC-----cEEEEEee
Q 038537 241 FSGSED-----TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQ-----TFKVWRVK 307 (358)
Q Consensus 241 ~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg-----~v~iw~~~ 307 (358)
+.|+.+ ..+.+||+.+.+. ..+..+......-..+.+ + +++++.|+.++ .+.+||+.
T Consensus 220 v~GG~~~~~~~~~v~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~------~~i~v~GG~~~~~~~~~v~~yd~~ 286 (308)
T 1zgk_A 220 AAGGYDGQDQLNSVERYDVETETW--TFVAPMKHRRSALGITVH--Q------GRIYVLGGYDGHTFLDSVECYDPD 286 (308)
T ss_dssp EECCBCSSSBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEE--T------TEEEEECCBCSSCBCCEEEEEETT
T ss_pred EEeCCCCCCccceEEEEeCCCCcE--EECCCCCCCccceEEEEE--C------CEEEEEcCcCCCcccceEEEEcCC
Confidence 888764 4589999988753 333333222222222222 3 57888887653 35566654
No 285
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.08 E-value=0.003 Score=51.87 Aligned_cols=201 Identities=10% Similarity=-0.001 Sum_probs=111.5
Q ss_pred CceEEEEEeCCCCEEEEE-ecCCeEEEEEccCC---cccccccccccccCeEEEEEcCCCCEE-EEEeCCCcEEEEEcee
Q 038537 90 DCVSCMAFYHAEGLLYTG-SFDKTVKAWRVLDK---RCTCVDSFVAHESNVNAIVVNQDDGFV-FTCSSDGSVKIWRRVY 164 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~ 164 (358)
..+..++|++.+..|+.+ ..++.|..+++... .. ....+...-.....+++++.+..| ++-...+.|.++++..
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~-~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS-YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC---------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc-cEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 347889999866555544 45689999998761 10 111122222345788998755544 4445678899998743
Q ss_pred cCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-C-CcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEE
Q 038537 165 RENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-D-GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFS 242 (358)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (358)
.. ...+ ..........+++.| .+..|+.+.. . +.|..+++..... ..... .......-+++++++..|+.
T Consensus 109 ~~-~~~~---~~~~~~~P~~iavdp--~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~~-~~~~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VK-RKTL---FRENGSKPRAIVVDP--VHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVT-ENIQWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SS-EEEE---EECTTCCEEEEEEET--TTTEEEEEECSSSCEEEEEETTSCCE-EEEEC-SSCSCEEEEEEETTTTEEEE
T ss_pred Cc-eEEE---EECCCCCcceEEeCC--CCCEEEEEccCCCCeEEEEcCCCCCe-EEEEE-CCCCCceEEEEeccCCEEEE
Confidence 21 1111 122234678899987 5555544443 3 6788888754111 11100 01111223566665655554
Q ss_pred e-eCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 243 G-SEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 243 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+ ...+.|..+|+..... +.+...........+|++.. +.++++-...+.|..++..+
T Consensus 181 ~D~~~~~I~~~d~dg~~~--~~~~~~~~~~~~P~giav~~-------~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVFE-------DKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp EETTTTEEEEEETTSCSC--EEEEECTTTTSSEEEEEEET-------TEEEEEETTTTEEEEEETTT
T ss_pred EECCCCeEEEEecCCCce--EEEeecCCccCCcEEEEEEC-------CEEEEEECCCCeEEEEeCCC
Confidence 4 4667899999875421 22222212223456777753 56777777778888887643
No 286
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=98.08 E-value=0.00078 Score=56.41 Aligned_cols=143 Identities=10% Similarity=0.023 Sum_probs=70.0
Q ss_pred CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC------CCcEEEEEceecCCcceeeeeecccCCceeE
Q 038537 111 KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS------DGSVKIWRRVYRENSHTLTMTLKFQQSSVNA 184 (358)
Q Consensus 111 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~ 184 (358)
..+.+||+.+.++..+..+......-.+++.. ++.+++.|+. ...+..||+......+.....+.........
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence 57899999988876654443211111223332 5666666654 3457777763233333332222111111121
Q ss_pred EEEeecCCCcEEEEeecC----------------------CcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEE
Q 038537 185 LALSSFFDNYFLYSGSSD----------------------GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFS 242 (358)
Q Consensus 185 ~~~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (358)
.+... ++.+++.|+.+ ..+.+||+.+.. ......+........++..++++++.
T Consensus 247 ~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~ 322 (357)
T 2uvk_A 247 FAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK--WDKSGELSQGRAYGVSLPWNNSLLII 322 (357)
T ss_dssp EEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCBSSEEEEETTEEEEE
T ss_pred eEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc--eeeCCCCCCCcccceeEEeCCEEEEE
Confidence 12222 67788887742 247788887632 22222222112222344567788888
Q ss_pred eeCCC------eEEEEEcCCCc
Q 038537 243 GSEDT------TIRVWRRAEGG 258 (358)
Q Consensus 243 ~~~dg------~i~iwd~~~~~ 258 (358)
|+.++ .|.++++.+++
T Consensus 323 GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 323 GGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp EEECGGGCEEEEEEEEEC-CCS
T ss_pred eeeCCCCCEeeeEEEEEEcCcE
Confidence 88553 35666887774
No 287
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.07 E-value=0.0039 Score=53.04 Aligned_cols=224 Identities=15% Similarity=0.061 Sum_probs=123.5
Q ss_pred CCcEEEEeCCCceeeeeeeecccceEEEEec--CCEEE-EEeCCceEEEEecccccccccccccccCCCceeeeecCCCc
Q 038537 8 STRIRVWRQPDCVERGFIKARHGEVRAILAH--DNMLF-TTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNT 84 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (358)
...|+..++........+ .....+.++.++ ++.|+ +-...+.|..++++.......... .
T Consensus 91 ~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~----------------~ 153 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT----------------V 153 (400)
T ss_dssp TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEE----------------E
T ss_pred cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceE----------------E
Confidence 467888888765544333 334556677775 44444 444567888888765321000000 0
Q ss_pred cccCCCceEEEEEeCCCC-EEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC--CCcEEEEE
Q 038537 85 QQQHRDCVSCMAFYHAEG-LLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS--DGSVKIWR 161 (358)
Q Consensus 85 ~~~h~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd 161 (358)
+.........+++.+.+. +.++-...+.|.+.+++... ....+...-.....|+++|.+..|+.... .+.|...+
T Consensus 154 ~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~--~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~ 231 (400)
T 3p5b_L 154 ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK--RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 231 (400)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCS--EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEE
T ss_pred EeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCc--eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEe
Confidence 112234577899987444 44555567889999987654 22222223345789999997776666553 36788877
Q ss_pred ceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEe-ecCCcEEEEEccCCcCCccccceeecccceeEEEeeeC-CE
Q 038537 162 RVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSG-SSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE-KL 239 (358)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 239 (358)
+.... ...+ ....-.....+++++ ++..|+.+ ...+.|..+|+..... ..... ..........+..++ .+
T Consensus 232 ~dG~~-~~~~---~~~~l~~P~glavd~--~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~-~~~~l~~P~gl~v~~~~l 303 (400)
T 3p5b_L 232 LNGVD-IYSL---VTENIQWPNGITLDL--LSGRLYWVDSKLHSISSIDVNGGNR-KTILE-DEKRLAHPFSLAVFEDKV 303 (400)
T ss_dssp TTSCS-CEEE---ECSSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCCC-EEEEE-CSSTTSSEEEEEEETTEE
T ss_pred CCCCc-cEEE---EECCCCceEEEEEEe--CCCEEEEEECCCCEEEEEeCCCCcc-EEEEe-CCCCCCCCEEEEEeCCEE
Confidence 64221 1111 112235678899997 55555544 4567899999865221 11110 101112223444444 45
Q ss_pred EEEeeCCCeEEEEEcCCCc
Q 038537 240 IFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 240 l~~~~~dg~i~iwd~~~~~ 258 (358)
+++-...+.|..+|..+++
T Consensus 304 ywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 304 FWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEESSSCSEEEEESSSCC
T ss_pred EEecCCCCeEEEEEcCCCC
Confidence 5555677889999977774
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.07 E-value=0.003 Score=51.76 Aligned_cols=193 Identities=10% Similarity=0.153 Sum_probs=112.3
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEE------ecCC---EEEEE-eC--CceEEEEecccc-ccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAIL------AHDN---MLFTT-NK--DCKIRIWNFTVS-DNFRTKKVT 68 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~------~~~~---~l~s~-~~--dg~i~iw~~~~~-~~~~~~~~~ 68 (358)
++.....+-+.+||+ +++.++.+.. +.++.+. ..+. ++++. -. +++|.+|+++.. ..+......
T Consensus 43 ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp EEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred EEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 445556678999999 8888887754 3344332 2333 22333 33 579999987522 112111000
Q ss_pred ccCCCceeeeecCCCccccCCCceEEEEE--eCC-CC-EEEEEecCCeEEEEEccC---C--cccccccccccccCeEEE
Q 038537 69 TLPRRSSFLSFSKSNTQQQHRDCVSCMAF--YHA-EG-LLYTGSFDKTVKAWRVLD---K--RCTCVDSFVAHESNVNAI 139 (358)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~~---~--~~~~~~~~~~~~~~v~~~ 139 (358)
..+ +..-...+..+++ +|. +. ++++...+|.+..|++.. + ..+.++++.. .+.+..+
T Consensus 120 ~~p-------------v~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~Egc 185 (355)
T 3amr_A 120 DHP-------------IATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGM 185 (355)
T ss_dssp TSC-------------EECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEE
T ss_pred ccC-------------cCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceE
Confidence 000 0011144566777 664 43 678888899999999843 2 2224555543 4678899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEceecC-Ccceeeeee--cccCCceeEEEEeecCCCc-EEEEee-cCCcEEEEEcc
Q 038537 140 VVNQDDGFVFTCSSDGSVKIWRRVYRE-NSHTLTMTL--KFQQSSVNALALSSFFDNY-FLYSGS-SDGSINFWEKD 211 (358)
Q Consensus 140 ~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~--~~~~~~i~~~~~~~~~~~~-~l~~~~-~dg~i~i~d~~ 211 (358)
...+....|+.+-++.-|..++.+... ....+.... ......+..|++.+..++. +|++++ .+....+||.+
T Consensus 186 vvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 186 AADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 999988999999998666555543221 112222222 2223468888886533444 555555 57799999986
No 289
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.04 E-value=0.0024 Score=51.86 Aligned_cols=162 Identities=8% Similarity=0.102 Sum_probs=99.3
Q ss_pred EEEec--CCEEEEEe-CCceEEEEecccccccccccccccCCCceeeeecCCCcccc-CCCceEEEEE---eCCCCEEEE
Q 038537 34 AILAH--DNMLFTTN-KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQ-HRDCVSCMAF---YHAEGLLYT 106 (358)
Q Consensus 34 ~i~~~--~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~---~~~~~~l~~ 106 (358)
++.|+ ...+..++ ..|+|..|+...+..... ...... ..+ ....+..|.| .|+++++++
T Consensus 17 ~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s-------------~~g~~~~~~sGl~~~~~D~~grL~vv 82 (334)
T 2p9w_A 17 DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGAS-------------SNGDGEQQMSGLSLLTHDNSKRLFAV 82 (334)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTC-------------CSSCCSEEEEEEEESSSSSCCEEEEE
T ss_pred CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCcc-------------ccCCCcceeeEEEEeccCCCCcEEEE
Confidence 55665 35666665 789999999875433221 111000 001 1113578999 588777775
Q ss_pred Eec-------------CCeEEEEEcc---CCcccccccccc-----------cccCeEEEEEcCCCCEEEEEeCC-CcEE
Q 038537 107 GSF-------------DKTVKAWRVL---DKRCTCVDSFVA-----------HESNVNAIVVNQDDGFVFTCSSD-GSVK 158 (358)
Q Consensus 107 ~~~-------------dg~i~iwd~~---~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d-g~i~ 158 (358)
... +..|..+|+. +++......+.. -......++..++|+..++++.. +.|.
T Consensus 83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~ 162 (334)
T 2p9w_A 83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIA 162 (334)
T ss_dssp EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEE
T ss_pred EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEE
Confidence 442 6789999998 665222222211 11348899999999999988887 7766
Q ss_pred EEEceecCCcceeeeee--cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 159 IWRRVYRENSHTLTMTL--KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
..+.... ......... .......+.+++.| ++..|++....|.+..+|+..
T Consensus 163 rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 163 RVSADGK-TVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EECTTSC-CEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSS
T ss_pred EEeCCCC-EEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCC
Confidence 6664322 111111111 11223467999998 898888887799999999885
No 290
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=98.04 E-value=0.0034 Score=51.24 Aligned_cols=220 Identities=9% Similarity=0.120 Sum_probs=113.0
Q ss_pred CcEEEEeCCCceeeee--eeecccceEEEEecCCEEEEEeC----C-----ceEEEEecccccccccccccccCCCceee
Q 038537 9 TRIRVWRQPDCVERGF--IKARHGEVRAILAHDNMLFTTNK----D-----CKIRIWNFTVSDNFRTKKVTTLPRRSSFL 77 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~--~~~h~~~v~~i~~~~~~l~s~~~----d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
..+.++|..+.+-... +......-..+..++.+++.|+. + ..+.+||..+.+-.... ..+
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~---~~p------ 109 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA---PMS------ 109 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECC---CCS------
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECC---CCC------
Confidence 3688888876553222 11111122233456777777765 2 35777777655322111 111
Q ss_pred eecCCCccccCCCceEEEEEeCCCCEEEEEecC-----CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEe
Q 038537 78 SFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD-----KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCS 152 (358)
Q Consensus 78 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 152 (358)
.....-.++.+ ++++++.|+.+ ..+.+||+.+.++..+..+.........+.+ ++.+++.|+
T Consensus 110 ---------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 176 (308)
T 1zgk_A 110 ---------VPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGG 176 (308)
T ss_dssp ---------SCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred ---------cCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeC
Confidence 01111122222 66777777644 3688999988876655444332222233333 567777776
Q ss_pred CC-----CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecC-----CcEEEEEccCCcCCccccce
Q 038537 153 SD-----GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD-----GSINFWEKDKMSGGFNHGGF 222 (358)
Q Consensus 153 ~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~ 222 (358)
.+ ..+.+||+.+.. ......+..... -.++... ++.+++.|+.+ ..+.+||+.+.. ......
T Consensus 177 ~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~-~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~ 248 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNE--WRMITAMNTIRS-GAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETET--WTFVAP 248 (308)
T ss_dssp BCSSCBCCCEEEEETTTTE--EEECCCCSSCCB-SCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE--EEECCC
T ss_pred CCCCCcCceEEEEeCCCCe--EeeCCCCCCccc-cceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCc--EEECCC
Confidence 54 458888875432 222111111111 1222222 67788888765 468999987732 221111
Q ss_pred eecccceeEEEeeeCCEEEEeeCC-----CeEEEEEcCCCc
Q 038537 223 LQGHCFAVLCLVAIEKLIFSGSED-----TTIRVWRRAEGG 258 (358)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 258 (358)
+........+...++.+++.|+.+ ..+.+||+.+.+
T Consensus 249 ~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 249 MKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 111111122333467777888754 457888888764
No 291
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=98.03 E-value=0.0032 Score=51.64 Aligned_cols=180 Identities=9% Similarity=0.096 Sum_probs=92.9
Q ss_pred CCCCEEEEEec----C-------CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC--------CcEEE
Q 038537 99 HAEGLLYTGSF----D-------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD--------GSVKI 159 (358)
Q Consensus 99 ~~~~~l~~~~~----d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~ 159 (358)
.++.+++.|+. + ..+.+||..+.++..+..+.........+.+ ++.+++.|+.+ ..+.+
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEE
Confidence 46777788874 1 2377889988876555444322222222222 56666777642 45888
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-C-----CcEEEEEccCCcCCccccceeecccceeEEE
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-D-----GSINFWEKDKMSGGFNHGGFLQGHCFAVLCL 233 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 233 (358)
||+.+.. ......+...... .+++. . ++.+++.|+. + ..+.+||..+.. ......+........+.
T Consensus 122 ~d~~~~~--W~~~~~~p~~r~~-~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~ 193 (315)
T 4asc_A 122 YDRLSFK--WGESDPLPYVVYG-HTVLS-H--MDLVYVIGGKGSDRKCLNKMCVYDPKKFE--WKELAPMQTARSLFGAT 193 (315)
T ss_dssp EETTTTE--EEECCCCSSCCBS-CEEEE-E--TTEEEEECCBCTTSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEE
T ss_pred ECCCCCc--EeECCCCCCcccc-eeEEE-E--CCEEEEEeCCCCCCcccceEEEEeCCCCe--EEECCCCCCchhceEEE
Confidence 8875432 2222211111111 22222 2 6778888876 2 468899987632 22111111111112233
Q ss_pred eeeCCEEEEeeCCC-----eEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 234 VAIEKLIFSGSEDT-----TIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 234 ~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
..++.+++.|+.++ .+.+||+.+.+. ..+..+......-..+.+ + +++++.|+.+
T Consensus 194 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~------~~l~v~GG~~ 253 (315)
T 4asc_A 194 VHDGRIIVAAGVTDTGLTSSAEVYSITDNKW--APFEAFPQERSSLSLVSL--V------GTLYAIGGFA 253 (315)
T ss_dssp EETTEEEEEEEECSSSEEEEEEEEETTTTEE--EEECCCSSCCBSCEEEEE--T------TEEEEEEEEE
T ss_pred EECCEEEEEeccCCCCccceEEEEECCCCeE--EECCCCCCcccceeEEEE--C------CEEEEECCcc
Confidence 44677888887654 488899988743 333333222222222222 3 5677777764
No 292
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.03 E-value=0.0037 Score=51.31 Aligned_cols=220 Identities=15% Similarity=0.073 Sum_probs=121.4
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEEec--CCEE-EEEeCCceEEEEecccc---cccccccccccCCCceeeeecCC
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAILAH--DNML-FTTNKDCKIRIWNFTVS---DNFRTKKVTTLPRRSSFLSFSKS 82 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~~l-~s~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
..|+..|+.+.+....+.. .....++.++ ++.| ++-...+.|..+++.+. .....
T Consensus 10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~------------------ 70 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT------------------ 70 (316)
T ss_dssp SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE------------------
T ss_pred CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE------------------
Confidence 5699999987765544433 3445677764 4444 44455789999988752 11100
Q ss_pred CccccCCCceEEEEEeCCCCEE-EEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC--CcEEE
Q 038537 83 NTQQQHRDCVSCMAFYHAEGLL-YTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD--GSVKI 159 (358)
Q Consensus 83 ~~~~~h~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~ 159 (358)
.+.........+++.+.+..| ++-...+.|.+.++..... .............++++|.+..|+.+... +.|..
T Consensus 71 -~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~ 147 (316)
T 1ijq_A 71 -VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK 147 (316)
T ss_dssp -EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred -EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce--EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEE
Confidence 001112335788888755544 4545678999999875431 11122223467899999976666655543 67777
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEE-EeecCCcEEEEEccCCcCCccccceeecccceeEEEeee-C
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLY-SGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAI-E 237 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 237 (358)
.++... ....+ ....-.....+++++ ++..|+ +-...+.|..+|+.... ...... ..........+..+ +
T Consensus 148 ~~~dG~-~~~~~---~~~~~~~P~gla~d~--~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~-~~~~~~~P~giav~~~ 219 (316)
T 1ijq_A 148 GGLNGV-DIYSL---VTENIQWPNGITLDL--LSGRLYWVDSKLHSISSIDVNGGN-RKTILE-DEKRLAHPFSLAVFED 219 (316)
T ss_dssp EETTSC-CEEEE---ECSSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCS-CEEEEE-CTTTTSSEEEEEEETT
T ss_pred EcCCCC-CeEEE---EECCCCCceEEEEec--cCCEEEEEECCCCeEEEEecCCCc-eEEEee-cCCccCCcEEEEEECC
Confidence 776321 11111 111234677899997 555554 44456789999987421 111110 00011112233333 4
Q ss_pred CEEEEeeCCCeEEEEEcCCCc
Q 038537 238 KLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~ 258 (358)
.++++-...+.|..++..+++
T Consensus 220 ~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 220 KVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEEETTTTEEEEEETTTCC
T ss_pred EEEEEECCCCeEEEEeCCCCc
Confidence 455555577889999887664
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.97 E-value=0.0016 Score=56.01 Aligned_cols=199 Identities=9% Similarity=0.002 Sum_probs=109.8
Q ss_pred CceEEEEEeCC--CCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEEc
Q 038537 90 DCVSCMAFYHA--EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDG-----SVKIWRR 162 (358)
Q Consensus 90 ~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~ 162 (358)
.....++++|+ +..|+.+...+.|+.+|..++.. ..+.........++++++++ |+.+...+ .+...+.
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v---~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~ 214 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV---DIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTR 214 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE---EEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECG
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEE---EEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEEC
Confidence 34678999984 44566555558899999877762 23333445689999999999 44444322 1333332
Q ss_pred eecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEE-
Q 038537 163 VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIF- 241 (358)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 241 (358)
... .... .... .-.....++++| .++.++++-..++.|+.+|..++................-++++++++.|+
T Consensus 215 ~~~-~~~~--~~~~-~~~~P~giavd~-~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYv 289 (433)
T 4hw6_A 215 ASG-FTER--LSLC-NARGAKTCAVHP-QNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYI 289 (433)
T ss_dssp GGT-TCCE--EEEE-ECSSBCCCEECT-TTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEE
T ss_pred CCC-eecc--cccc-ccCCCCEEEEeC-CCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEE
Confidence 111 1100 1111 234456677776 245555565567889999887422100110000011112378888888554
Q ss_pred EeeCCCeEEEEEcCC--CceeeeeeeeecC---------------cccceEEEEe---------ecccceeeeCeEEEEc
Q 038537 242 SGSEDTTIRVWRRAE--GGCYHECLAVLDG---------------HRGPVRCLAA---------SLEMEKVVMGFLVYSS 295 (358)
Q Consensus 242 ~~~~dg~i~iwd~~~--~~~~~~~~~~~~~---------------h~~~v~~i~~---------~~~~~~~~~~~~l~s~ 295 (358)
+-...+.|+.++... +.. .....+.+ .-.....+++ .++ +.++++-
T Consensus 290 ad~~~~~I~~~~~d~~~~~~--~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~------g~lyvaD 361 (433)
T 4hw6_A 290 IYNGKHCIYRVDYNRETGKL--AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDE------YDFYFCD 361 (433)
T ss_dssp EETTTTEEEEEEBCTTTCCB--CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCC------EEEEEEE
T ss_pred EeCCCCEEEEEeCCCCCccc--CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCC------CcEEEEE
Confidence 445678899988653 211 00011111 1123567888 555 6677777
Q ss_pred cCCCcEEEEE
Q 038537 296 SLDQTFKVWR 305 (358)
Q Consensus 296 ~~dg~v~iw~ 305 (358)
...+.|+.++
T Consensus 362 ~~n~~I~~~~ 371 (433)
T 4hw6_A 362 RDSHTVRVLT 371 (433)
T ss_dssp TTTTEEEEEC
T ss_pred CCCCEEEEEC
Confidence 7778888876
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.93 E-value=0.013 Score=54.25 Aligned_cols=223 Identities=15% Similarity=0.042 Sum_probs=119.8
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEEec--CC-EEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCcc
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAILAH--DN-MLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQ 85 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (358)
..|+..++........+. ....+.++.++ ++ ++++-...+.|+.+++........... .+
T Consensus 404 ~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~----------------vi 466 (791)
T 3m0c_C 404 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT----------------VI 466 (791)
T ss_dssp SSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE----------------EE
T ss_pred cceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeE----------------EE
Confidence 456777766544433333 33455667664 34 444555567888888765321000000 01
Q ss_pred ccCCCceEEEEEeCCCCEEE-EEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-C-CcEEEEEc
Q 038537 86 QQHRDCVSCMAFYHAEGLLY-TGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-D-GSVKIWRR 162 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~~wd~ 162 (358)
.........|++.+.++.|+ +-...+.|.+.++..... ...+.........|+++|....|+.+.. . +.|...++
T Consensus 467 ~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~--~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~ 544 (791)
T 3m0c_C 467 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544 (791)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE--EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE--EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEec
Confidence 11234467789988775555 445668999999876541 1122223345889999997666666653 2 56777776
Q ss_pred eecCCcceeeeeecccCCceeEEEEeecCCCcEEEEe-ecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEE
Q 038537 163 VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSG-SSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIF 241 (358)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 241 (358)
.... . .......-.....|++.+ .+..|+.+ .....|..+++..... ..+.. ....-.....+...+..|+
T Consensus 545 dG~~-~---~~lv~~~l~~P~GLavD~--~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~-~~~~l~~P~glav~~~~lY 616 (791)
T 3m0c_C 545 NGVD-I---YSLVTENIQWPNGITLDL--LSGRLYWVDSKLHSISSIDVNGGNR-KTILE-DEKRLAHPFSLAVFEDKVF 616 (791)
T ss_dssp TSCC-E---EEEECSSCSCEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSC-EEEEE-CTTTTSSEEEEEEETTEEE
T ss_pred CCCc-e---EEEEeCCCCCceEEEEec--CCCeEEEEeCCCCcEEEEecCCCce-EEEec-CCCccCCCCEEEEeCCEEE
Confidence 3221 1 111222235678899987 44444444 4567888888865221 11110 0011122345555555555
Q ss_pred E-eeCCCeEEEEEcCCCc
Q 038537 242 S-GSEDTTIRVWRRAEGG 258 (358)
Q Consensus 242 ~-~~~dg~i~iwd~~~~~ 258 (358)
. -...+.|...|..+++
T Consensus 617 wtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 617 WTDIINEAIFSANRLTGS 634 (791)
T ss_dssp EEETTTTEEEEEETTTCC
T ss_pred EEECCCCEEEEEeCCCCc
Confidence 4 4466788888877764
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=0.0096 Score=51.65 Aligned_cols=247 Identities=9% Similarity=0.022 Sum_probs=131.3
Q ss_pred EEEecC---CEEEEEe-CCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEE-------eCCCC
Q 038537 34 AILAHD---NMLFTTN-KDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAF-------YHAEG 102 (358)
Q Consensus 34 ~i~~~~---~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-------~~~~~ 102 (358)
.|++++ +.|+.+. ..+.|++.|+..+......... .........++| +++++
T Consensus 143 ~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~-----------------~~~~~~p~~ia~~~~~~~~d~~G~ 205 (496)
T 3kya_A 143 RLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNIN-----------------TIPTNRIRSIAFNKKIEGYADEAE 205 (496)
T ss_dssp EEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCT-----------------TSSCSBEEEEEECCCBTTTBCTTC
T ss_pred EEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccC-----------------ccccCCCcEEEEeecccccCCCCC
Confidence 455552 3444444 3467888887765443211100 112345889999 99998
Q ss_pred EEEEEecCC-------eEEEEEccC-Ccccc-c--ccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEce-------
Q 038537 103 LLYTGSFDK-------TVKAWRVLD-KRCTC-V--DSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRV------- 163 (358)
Q Consensus 103 ~l~~~~~dg-------~i~iwd~~~-~~~~~-~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~------- 163 (358)
.|+.+...+ .|.+.+... +.... . ..+.. -.....++++| ++.++++-..++.|..+|+.
T Consensus 206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~ 284 (496)
T 3kya_A 206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIK 284 (496)
T ss_dssp EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHH
T ss_pred EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEeccccccccc
Confidence 666665543 255665333 23210 0 12211 12346778899 45555566678889999987
Q ss_pred ecCC------c----ceeeeeecccCCceeEEEEeecCCCcE-EEEeecCCcEEEEEccCCcCCccccceee--------
Q 038537 164 YREN------S----HTLTMTLKFQQSSVNALALSSFFDNYF-LYSGSSDGSINFWEKDKMSGGFNHGGFLQ-------- 224 (358)
Q Consensus 164 ~~~~------~----~~~~~~~~~~~~~i~~~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-------- 224 (358)
++.. . ....... ........++++| +++. +++-.....|+.++.............+.
T Consensus 285 tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p--~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~ 361 (496)
T 3kya_A 285 NGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHP--TGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGY 361 (496)
T ss_dssp TTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCC
T ss_pred CceeecccccccccccceeEec-CCCCCceEEEEcC--CCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcc
Confidence 3332 0 0011111 1234567899998 8885 44445677888866543111000000000
Q ss_pred ----------cccceeEEEe-------eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeee----------cC--------
Q 038537 225 ----------GHCFAVLCLV-------AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVL----------DG-------- 269 (358)
Q Consensus 225 ----------~~~~~~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------~~-------- 269 (358)
.++....++. ..+.++++=..+..|+.++. ++.. ......- .+
T Consensus 362 ~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~ 439 (496)
T 3kya_A 362 RDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIV-STYAGRGASTSLADGNQWGTDDGDLRE 439 (496)
T ss_dssp BCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBE-EEEEESCTTHHHHHSCSCCCCCEETTT
T ss_pred cCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCE-EEEecccccccccCccccccCCCCchh
Confidence 0111123443 34566666667888999984 4421 1111110 01
Q ss_pred --cccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 270 --HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 270 --h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.-.....|++.++. +.++++=.....||.++++.
T Consensus 440 ~a~f~~P~gIavd~~~-----g~lyVaD~~N~rIrki~~~~ 475 (496)
T 3kya_A 440 VARFRDVSGLVYDDVK-----EMFYVHDQVGHTIRTISMEQ 475 (496)
T ss_dssp TCCCSSEEEEEEETTT-----TEEEEEETTTTEEEEEEECC
T ss_pred hhhcCCCcEEEEECCC-----CEEEEEeCCCCEEEEEECCC
Confidence 11235789999841 56777777788899998874
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.88 E-value=0.004 Score=51.05 Aligned_cols=201 Identities=12% Similarity=0.163 Sum_probs=110.6
Q ss_pred CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCC----CC---EEEEEeC---CCcEEEEEceecCCcc
Q 038537 100 AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD----DG---FVFTCSS---DGSVKIWRRVYRENSH 169 (358)
Q Consensus 100 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~~wd~~~~~~~~ 169 (358)
...+++.....+-+.+||+ +++ .+..+.. +.++.+..-|+ ++ ++++... +++|++|++.......
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~--~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGK--MLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSC--EEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE
T ss_pred CccEEEEEcCCCCEEEEcC-CCc--EEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce
Confidence 3346666677788999999 555 4555432 56777776652 22 2333333 4789999774221111
Q ss_pred eeeee----ecccCCceeEEEE--eecCCCcEEEEeecCCcEEEEEccCCc---CCccccceeecc-cceeEEEeeeCCE
Q 038537 170 TLTMT----LKFQQSSVNALAL--SSFFDNYFLYSGSSDGSINFWEKDKMS---GGFNHGGFLQGH-CFAVLCLVAIEKL 239 (358)
Q Consensus 170 ~~~~~----~~~~~~~i~~~~~--~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~ 239 (358)
..... .......+..+++ ++.....++++...+|.+..|++.... ...+....+... ...-+.+.+....
T Consensus 114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR 193 (355)
T ss_dssp EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence 11100 1111256777777 441122368888889999999985421 112222323222 2222333445689
Q ss_pred EEEeeCCCeEEEEEcCCCc-eeeeeeeeec-Cc-ccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 240 IFSGSEDTTIRVWRRAEGG-CYHECLAVLD-GH-RGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 240 l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~-~h-~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
|+.+-++.-|..++..... ...+.+..+. ++ ...+..|++.+.... .+.+|+|+-.+.++.+||.+
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g--~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADG--KGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGG--CEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCC--CEEEEEEcCCCCEEEEEECC
Confidence 9999998777777754221 0013344332 22 347888888543210 03455665577899999986
No 297
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.85 E-value=0.0083 Score=49.46 Aligned_cols=237 Identities=6% Similarity=-0.040 Sum_probs=116.0
Q ss_pred ccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe
Q 038537 29 HGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS 108 (358)
Q Consensus 29 ~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 108 (358)
...+.++.++++.++.++.+|.|.. ..+.++.-..... ...+...+..+.+.+++..++.+
T Consensus 79 ~~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~-----------------~~~~~~~~~~i~~~~~~~~~~~~- 139 (327)
T 2xbg_A 79 DYRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPL-----------------DPKLPGSPRLIKALGNGSAEMIT- 139 (327)
T ss_dssp CCEEEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCC-----------------CTTCSSCEEEEEEEETTEEEEEE-
T ss_pred CccEEEEEecCCeEEEEECCCeEEE-ECCCCCCceECcc-----------------ccCCCCCeEEEEEECCCCEEEEe-
Confidence 3467788777666666666775543 3333332211110 01122346677777666655554
Q ss_pred cCCeEEEEEccCC-cccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEE
Q 038537 109 FDKTVKAWRVLDK-RCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALAL 187 (358)
Q Consensus 109 ~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~ 187 (358)
.+|.|..- .+.+ .+..+. ......+..+.+.+++.+++++ .+|.+..-+ ..+....+... ......+..+.+
T Consensus 140 ~~g~v~~S-~DgG~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g-~~G~~~~S~-d~gG~tW~~~~--~~~~~~~~~~~~ 212 (327)
T 2xbg_A 140 NVGAIYRT-KDSGKNWQALV--QEAIGVMRNLNRSPSGEYVAVS-SRGSFYSTW-EPGQTAWEPHN--RTTSRRLHNMGF 212 (327)
T ss_dssp TTCCEEEE-SSTTSSEEEEE--CSCCCCEEEEEECTTSCEEEEE-TTSSEEEEE-CTTCSSCEEEE--CCSSSCEEEEEE
T ss_pred CCccEEEE-cCCCCCCEEee--cCCCcceEEEEEcCCCcEEEEE-CCCcEEEEe-CCCCCceeECC--CCCCCccceeEE
Confidence 45544321 1112 222221 2345578899999988877665 455544322 11112222221 223456778888
Q ss_pred eecCCCcEEEEeecCCcEEEEEccCCcCCcccccee-ecccceeEEE--eeeCCEEEEeeCCCeEEEEEcCCCceeeeee
Q 038537 188 SSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFL-QGHCFAVLCL--VAIEKLIFSGSEDTTIRVWRRAEGGCYHECL 264 (358)
Q Consensus 188 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 264 (358)
.+ ++..+ .++.+|.+++.+...+. ........ ......+.++ .+++.+++++ .+|.| ++....++ .++.+
T Consensus 213 ~~--~g~~~-~~~~~G~~~~s~~D~G~-tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~-tW~~~ 285 (327)
T 2xbg_A 213 TP--DGRLW-MIVNGGKIAFSDPDNSE-NWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQ-TWQQD 285 (327)
T ss_dssp CT--TSCEE-EEETTTEEEEEETTEEE-EECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTS-SCEEC
T ss_pred CC--CCCEE-EEeCCceEEEecCCCCC-eeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCc-ccEEc
Confidence 76 66554 45567877776422111 01111100 0111223444 3445555554 56766 34444442 12222
Q ss_pred eeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEE
Q 038537 265 AVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWR 305 (358)
Q Consensus 265 ~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~ 305 (358)
.........+.++.|.++ +. ++.++.+|.|.-++
T Consensus 286 ~~~~~~~~~~~~v~~~~~------~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 286 VDVKKVPSNFYKILFFSP------DQ-GFILGQKGILLRYV 319 (327)
T ss_dssp GGGTTSSSCCCEEEEEET------TE-EEEECSTTEEEEEC
T ss_pred CccCCCCCCeEEEEEECC------Cc-eEEEcCCceEEEEc
Confidence 211123456788888755 44 55666788766554
No 298
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.84 E-value=0.0051 Score=52.87 Aligned_cols=156 Identities=8% Similarity=-0.007 Sum_probs=92.8
Q ss_pred ceEEEEEeC-CCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-CC----cEEEEEcee
Q 038537 91 CVSCMAFYH-AEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DG----SVKIWRRVY 164 (358)
Q Consensus 91 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~~wd~~~ 164 (358)
....|+++| ++..|+.+...+.|+.+|+..+.. ..+.........++++++++.|+++.. ++ .+..++. .
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v---~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV---STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE---EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE---EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C
Confidence 467899998 466677766668899999887652 223334556889999999996666654 22 2333332 2
Q ss_pred cCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec-ccceeEEEeeeCCEE-EE
Q 038537 165 RENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG-HCFAVLCLVAIEKLI-FS 242 (358)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l-~~ 242 (358)
+..... ..+. .......++++| .++.++++-..++.|..++....... ....... ....-+++++++++| ++
T Consensus 214 g~~~~~--~~l~-~~~~p~giavdp-~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 214 SGFKVI--TELT-KGQNCNGAETHP-INGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp GTSCSE--EEEE-ECSSCCCEEECT-TTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred Cceeee--eeec-cCCCceEEEEeC-CCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCCCcceeEEEcCCCCEEEEE
Confidence 221111 1111 134467788876 24555666556788999998752210 1111111 112346788899844 45
Q ss_pred eeCCCeEEEEEcCC
Q 038537 243 GSEDTTIRVWRRAE 256 (358)
Q Consensus 243 ~~~dg~i~iwd~~~ 256 (358)
-..++.|..++...
T Consensus 288 d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 288 VVNQHYILRSDYDW 301 (430)
T ss_dssp ETTTTEEEEEEEET
T ss_pred ECCCCEEEEEeCCc
Confidence 55678899987653
No 299
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.82 E-value=0.0091 Score=48.86 Aligned_cols=225 Identities=8% Similarity=0.043 Sum_probs=114.3
Q ss_pred EEeeeCCCcEEEEeCCCceeee-eeee--cccceEEEEecCCEEEEEeC----C-------ceEEEEecccccccccccc
Q 038537 2 VFTGSSSTRIRVWRQPDCVERG-FIKA--RHGEVRAILAHDNMLFTTNK----D-------CKIRIWNFTVSDNFRTKKV 67 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~-~~~~--h~~~v~~i~~~~~~l~s~~~----d-------g~i~iw~~~~~~~~~~~~~ 67 (358)
++.|+ ..+.+||..+.+-.. .+.. ......++..++..++.|+. + ..+.+||..+.+-...
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~--- 82 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM--- 82 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC---
T ss_pred EEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC---
Confidence 44555 569999998876432 1111 11122233446777777773 1 1266777765432111
Q ss_pred cccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecC--------CeEEEEEccCCcccccccccccccCeEEE
Q 038537 68 TTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFD--------KTVKAWRVLDKRCTCVDSFVAHESNVNAI 139 (358)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 139 (358)
...+. ....| ..+.+ ++.+++.|+.+ ..+.+||..+.++..+..+.........+
T Consensus 83 ~~~p~-----------~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~ 145 (315)
T 4asc_A 83 PPLPS-----------PRCLF----GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVL 145 (315)
T ss_dssp CCBSS-----------CEESC----EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE
T ss_pred CCCCc-----------chhce----eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEE
Confidence 11110 00112 12222 56677777743 46889999988766655443322222223
Q ss_pred EEcCCCCEEEEEeC-C-----CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC-----cEEEE
Q 038537 140 VVNQDDGFVFTCSS-D-----GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG-----SINFW 208 (358)
Q Consensus 140 ~~~~~~~~l~~~~~-d-----g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg-----~i~i~ 208 (358)
. -++.+++.|+. + ..+.+||+.+.. ......+.... .-.+++.. ++.+++.|+.++ .+.+|
T Consensus 146 ~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~y 217 (315)
T 4asc_A 146 S--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE--WKELAPMQTAR-SLFGATVH---DGRIIVAAGVTDTGLTSSAEVY 217 (315)
T ss_dssp E--ETTEEEEECCBCTTSCBCCCEEEEETTTTE--EEECCCCSSCC-BSCEEEEE---TTEEEEEEEECSSSEEEEEEEE
T ss_pred E--ECCEEEEEeCCCCCCcccceEEEEeCCCCe--EEECCCCCCch-hceEEEEE---CCEEEEEeccCCCCccceEEEE
Confidence 3 25667777766 2 468888875432 22221111111 11222222 678888887754 47888
Q ss_pred EccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCC--------------eEEEEEcCCCc
Q 038537 209 EKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDT--------------TIRVWRRAEGG 258 (358)
Q Consensus 209 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~ 258 (358)
|+.+.. ...............+...++.+++.|+.++ .+.+||+.+.+
T Consensus 218 d~~~~~--W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 218 SITDNK--WAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp ETTTTE--EEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred ECCCCe--EEECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 887632 2211111111112223344667777777542 36788888764
No 300
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.81 E-value=0.0083 Score=48.78 Aligned_cols=164 Identities=5% Similarity=0.006 Sum_probs=101.1
Q ss_pred ceEEEEEeCCCCEEEEEe-cCCeEEEEEccCCcccccccccc----cc--cCeEEEEE---cCCCCEEEEEeC-------
Q 038537 91 CVSCMAFYHAEGLLYTGS-FDKTVKAWRVLDKRCTCVDSFVA----HE--SNVNAIVV---NQDDGFVFTCSS------- 153 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~----~~--~~v~~~~~---~~~~~~l~~~~~------- 153 (358)
--.+++|++....|..++ ..++|..|+...+....+ .+.. .. ..+..|.| .|+++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 345789988666666665 789999999976542233 3322 11 13579999 688777775442
Q ss_pred ------CCcEEEEEce---ecCCcceeeeee--cc-------cCCceeEEEEeecCCCcEEEEeecC-CcEEEEEccCCc
Q 038537 154 ------DGSVKIWRRV---YRENSHTLTMTL--KF-------QQSSVNALALSSFFDNYFLYSGSSD-GSINFWEKDKMS 214 (358)
Q Consensus 154 ------dg~i~~wd~~---~~~~~~~~~~~~--~~-------~~~~i~~~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~ 214 (358)
+..|..+|+. +++......... .. .......++..+ +|+..++++.. +.|...+.....
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~--~GnaYVt~s~~~~~I~rV~pdG~~ 170 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR--DGNSYVAFALGMPAIARVSADGKT 170 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT--TSCEEEEEEESSCEEEEECTTSCC
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC--CCCEEEeCCCCCCeEEEEeCCCCE
Confidence 6779999987 554433322110 00 113477888887 89999988888 777777655421
Q ss_pred CCccccce---eecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 215 GGFNHGGF---LQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 215 ~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
........ .......=+.+.|+++.|++....|.|..+|+...
T Consensus 171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 00000000 00011123567888988888777999999998843
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.73 E-value=0.00045 Score=63.31 Aligned_cols=222 Identities=15% Similarity=0.078 Sum_probs=113.8
Q ss_pred CcEEEEeCCCceeeeeeeecccceEEEEec--CCEEEEE-eCCceEEEEecccccccccccccccCCCceeeeecCCCcc
Q 038537 9 TRIRVWRQPDCVERGFIKARHGEVRAILAH--DNMLFTT-NKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQ 85 (358)
Q Consensus 9 g~v~vw~~~~~~~~~~~~~h~~~v~~i~~~--~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (358)
+.|+..++.+.+....+... ..+.++.++ ++.|+.+ ...+.|+.+++.+........ ..+
T Consensus 386 ~~I~~id~~~~~~~~~~~~~-~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~----------------~~i 448 (699)
T 1n7d_A 386 HEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD----------------TVI 448 (699)
T ss_dssp TC-CEECTTSCCEECCSCCC-TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCC----------------CBC
T ss_pred cceEEEeCCCCcceeeeccC-cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceE----------------EEE
Confidence 46777777665544333322 233455553 4555554 456788888876511000000 000
Q ss_pred ccCCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC--CCcEEEEEc
Q 038537 86 QQHRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS--DGSVKIWRR 162 (358)
Q Consensus 86 ~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~ 162 (358)
.........|++.+.+ +++++-...+.|.+.++..... ...+.........|+++|.+..|+.+.. .+.|..+++
T Consensus 449 ~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~--~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~ 526 (699)
T 1n7d_A 449 SRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR--KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 526 (699)
T ss_dssp CSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE--EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCS
T ss_pred eCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce--EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeC
Confidence 1111224567777544 4444445568899999876541 1112222234578889986665555443 267777765
Q ss_pred eecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccce--eecccceeEEEeeeC-CE
Q 038537 163 VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGF--LQGHCFAVLCLVAIE-KL 239 (358)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~ 239 (358)
.... ...+ ....-.....|+++| ..+.++++-...+.|..+++..... ...... ...+. ..+..++ .+
T Consensus 527 dG~~-~~~l---~~~~l~~PnGlavd~-~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P---~glavd~~~l 597 (699)
T 1n7d_A 527 NGVD-IYSL---VTENIQWPNGITLDL-LSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHP---FSLAVFEDKV 597 (699)
T ss_dssp SSCC-CCEE---SCSSCSSCCCEEECT-TTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSC---CCCEEETTEE
T ss_pred CCCC-eeEE---EeCCCCCccEEEEec-cCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCc---eEeEEECCEE
Confidence 3221 1111 111234567899987 1345555555677899999864211 111110 11222 2233343 45
Q ss_pred EEEeeCCCeEEEEEcCCCc
Q 038537 240 IFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 240 l~~~~~dg~i~iwd~~~~~ 258 (358)
+++....+.|..++..+++
T Consensus 598 ywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 598 FWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp EEECSTTTCEEEEETTTEE
T ss_pred EEEeCCCCeEEEEEccCCC
Confidence 5555667889999988773
No 302
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.73 E-value=0.013 Score=48.04 Aligned_cols=180 Identities=9% Similarity=0.121 Sum_probs=89.8
Q ss_pred CCCCEEEEEec----CC-------eEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCC-------CcEEEE
Q 038537 99 HAEGLLYTGSF----DK-------TVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSD-------GSVKIW 160 (358)
Q Consensus 99 ~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~~w 160 (358)
.++.+++.|+. ++ .+.+||..+.++..+..+.........+.+ ++.+++.|+.+ ..+.+|
T Consensus 55 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~y 132 (318)
T 2woz_A 55 QQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCY 132 (318)
T ss_dssp SSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEE
T ss_pred ECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEE
Confidence 46777777773 12 277889888876555444332222222233 56777777754 246777
Q ss_pred EceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec------CCcEEEEEccCCcCCccccceeecccceeEEEe
Q 038537 161 RRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS------DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLV 234 (358)
Q Consensus 161 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (358)
|+.+.. +.....+...... .+++. . ++.+++.|+. -..+.+||+.+.. ...............+..
T Consensus 133 d~~~~~--W~~~~~~p~~r~~-~~~~~-~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~ 204 (318)
T 2woz_A 133 DPVAAK--WSEVKNLPIKVYG-HNVIS-H--NGMIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAPMKTPRSMFGVAI 204 (318)
T ss_dssp ETTTTE--EEEECCCSSCEES-CEEEE-E--TTEEEEECCEESSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEE
T ss_pred eCCCCC--EeECCCCCCcccc-cEEEE-E--CCEEEEEcCCCCCCCccceEEEEcCCCCE--EEECCCCCCCcccceEEE
Confidence 765432 2222111111111 12222 2 6777777764 2358899987732 111111111111112333
Q ss_pred eeCCEEEEeeCC-----CeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCC
Q 038537 235 AIEKLIFSGSED-----TTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLD 298 (358)
Q Consensus 235 ~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~d 298 (358)
.++.+++.|+.+ ..+.+||+.+.+. +.+..+......-..+.+ + +.+++.|+.+
T Consensus 205 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~--~------~~i~v~GG~~ 263 (318)
T 2woz_A 205 HKGKIVIAGGVTEDGLSASVEAFDLKTNKW--EVMTEFPQERSSISLVSL--A------GSLYAIGGFA 263 (318)
T ss_dssp ETTEEEEEEEEETTEEEEEEEEEETTTCCE--EECCCCSSCCBSCEEEEE--T------TEEEEECCBC
T ss_pred ECCEEEEEcCcCCCCccceEEEEECCCCeE--EECCCCCCcccceEEEEE--C------CEEEEECCee
Confidence 467777777643 3477899888753 333333222222122222 3 5678888765
No 303
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.71 E-value=0.042 Score=53.34 Aligned_cols=243 Identities=8% Similarity=0.028 Sum_probs=123.0
Q ss_pred cEEEEeCCCceeeeeeeec-ccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccC
Q 038537 10 RIRVWRQPDCVERGFIKAR-HGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQH 88 (358)
Q Consensus 10 ~v~vw~~~~~~~~~~~~~h-~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 88 (358)
.|++.+......+..+... ...|.+.+.++.+++.++ ++.+..+.++.++.... .. ..-
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~-g~~l~~fel~~~~L~~~-~~------------------~~l 552 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHPQELRQI-SH------------------TEM 552 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEE-TTEEEEEEEETTEEEEE-EE------------------EEC
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEE-CCEEEEEEeeCCceeee-cc------------------cCC
Confidence 3566665544444444433 335777777777777775 67888888775432111 00 122
Q ss_pred CCceEEEEEeCC------CCEEEEEec-CCeEEEEEccCCcccccccccccccCeEEEEEc--CCCCEEEEEeCCCcEEE
Q 038537 89 RDCVSCMAFYHA------EGLLYTGSF-DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVN--QDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 89 ~~~v~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~~ 159 (358)
...|.|+++.|. +++++.|.. |++++|+++.+.+......+.. +....++.+. ....+|..|-.||.+.-
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFY 631 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence 456999999763 368999997 9999999998655222222211 2234444443 23457889999999877
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecc-cceeEEEeee--
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGH-CFAVLCLVAI-- 236 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 236 (358)
+.+........-.........++.-..+.. ..+..+++++ +....+|.-+. ..... .+... -..+..|+..
T Consensus 632 ~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~-~~~~~V~a~s-~rp~liy~~~~---~l~~s-~l~~~~v~~~~~F~se~~ 705 (1158)
T 3ei3_A 632 FGLNIETGLLSDRKKVTLGTQPTVLRTFRS-LSTTNVFACS-DRPTVIYSSNH---KLVFS-NVNLKEVNYMCPLNSDGY 705 (1158)
T ss_dssp EEECTTTCCEEEEEEEECCSSCCEEEEEES-SSCEEEEEES-SSCEEEEESSS---SEEEE-EBSSSCCCEEEEECCSSS
T ss_pred EEEcCCCCccccceeEEcCCCceEEEEEee-CCceeEEEEC-CCCEEEEEcCC---ceEEe-ccChHHhceEeccCcccC
Confidence 765421111111111111123333333332 1222333333 44444444322 11111 01111 1122333221
Q ss_pred CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeeccc
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEM 283 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~ 283 (358)
++-++..+ ++.++|..+..... -.+..+. -...+..++++|+.
T Consensus 706 ~~g~v~~~-~~~LrI~~i~~~~~--~~~~~ip-L~~Tprri~y~~~~ 748 (1158)
T 3ei3_A 706 PDSLALAN-NSTLTIGTIDEIQK--LHIRTVP-LYESPRKICYQEVS 748 (1158)
T ss_dssp TTEEEEEC-SSCEEEEEECCSSS--EEEEEEE-CSSEEEEEEEEGGG
T ss_pred CCcEEEEc-CCceEEEEecccCC--eeEEEEe-CCCCceEEEEcCCC
Confidence 34455444 34599998765422 1223332 23578899999983
No 304
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.70 E-value=0.018 Score=48.94 Aligned_cols=203 Identities=9% Similarity=-0.014 Sum_probs=112.8
Q ss_pred CCceEEEEEeCCCCEEEEE-ecCCeEEEEEccCCc--ccccccccccccCeEEEEEcCCCC-EEEEEeCCCcEEEEEcee
Q 038537 89 RDCVSCMAFYHAEGLLYTG-SFDKTVKAWRVLDKR--CTCVDSFVAHESNVNAIVVNQDDG-FVFTCSSDGSVKIWRRVY 164 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~ 164 (358)
...+..++|++.+..|+.+ ...+.|+.+++.... ................+++.+.+. +.++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 4457899999866656555 456789888886521 001122222335678899998444 444545577888888743
Q ss_pred cCCcceeeeeecccCCceeEEEEeecCCCcEEEEee-c-CCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEE
Q 038537 165 RENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS-S-DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFS 242 (358)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 242 (358)
.. ..............+++.| .+..|+... . .+.|...++..... ..... .......-+++++++..|+.
T Consensus 191 ~~----~~~l~~~~~~~P~~iavdp--~~g~ly~td~~~~~~I~~~~~dG~~~-~~~~~-~~l~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VK----RKTLFRENGSKPRAIVVDP--VHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVT-ENIQWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CS----EEEEEECSSCCEEEEEEET--TTTEEEEEECSSSCCEEEEETTSCSC-EEEEC-SSCSCEEEEEEETTTTEEEE
T ss_pred Cc----eEEEEeCCCCCcceEEEec--ccCeEEEEeCCCCCEEEEEeCCCCcc-EEEEE-CCCCceEEEEEEeCCCEEEE
Confidence 22 1111222334578899987 555555444 2 36788888765211 11100 00011223566665666655
Q ss_pred e-eCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 243 G-SEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 243 ~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+ ...+.|..+|+..... +.+...........+|++.. +.++++-...+.|..++..+
T Consensus 263 aD~~~~~I~~~d~dG~~~--~~~~~~~~~l~~P~gl~v~~-------~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVFE-------DKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp EETTTTEEEEEETTSCCC--EEEEECSSTTSSEEEEEEET-------TEEEEEESSSCSEEEEESSS
T ss_pred EECCCCEEEEEeCCCCcc--EEEEeCCCCCCCCEEEEEeC-------CEEEEecCCCCeEEEEEcCC
Confidence 5 4567899999876422 22222112233455777743 46777777778888887543
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.65 E-value=0.0019 Score=59.20 Aligned_cols=198 Identities=11% Similarity=-0.008 Sum_probs=106.1
Q ss_pred ceEEEEEeCCCCEEEEEe-cCCeEEEEEccC----CcccccccccccccCeEEEEEcCCC-CEEEEEeCCCcEEEEEcee
Q 038537 91 CVSCMAFYHAEGLLYTGS-FDKTVKAWRVLD----KRCTCVDSFVAHESNVNAIVVNQDD-GFVFTCSSDGSVKIWRRVY 164 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~ 164 (358)
.+..++|++.+..|+.+. ..+.|+.+++.. .. ....+.........|++.+.+ +++++-...+.|.++++..
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~--~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS--YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC--CCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc--eEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence 466789998776666554 457899999875 22 111111112234567887544 4444445578899888743
Q ss_pred cCCcceeeeeecccCCceeEEEEeecCCCcEEEEee-cC-CcEEEEEccCCcCCccccceeecccceeEEEeeeCC-EEE
Q 038537 165 RENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS-SD-GSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEK-LIF 241 (358)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ 241 (358)
.. ..............+++.| .+..|+.+. .. +.|..+++...... .+.. .......-+++++++. +++
T Consensus 485 ~~----~~~l~~~~~~~P~giavDp--~~g~ly~td~~~~~~I~~~~~dG~~~~-~l~~-~~l~~PnGlavd~~~~~LY~ 556 (699)
T 1n7d_A 485 VK----RKTLFREQGSKPRAIVVDP--VHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVT-ENIQWPNGITLDLLSGRLYW 556 (699)
T ss_dssp CC----EEEECCCSSCCCCCEECCS--SSSCCEECCCSSSCCEEBCCSSSCCCC-EESC-SSCSSCCCEEECTTTCCEEE
T ss_pred Cc----eEEEEeCCCCCcceEEEcc--CCCcEEEcccCCCCeEEEEeCCCCCee-EEEe-CCCCCccEEEEeccCCEEEE
Confidence 21 1111122234567888887 444444433 22 67877776542111 1110 0111122367777654 445
Q ss_pred EeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 242 SGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 242 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
+-...+.|..+++..... +.+...........+|++.. +.++++....+.|..++..
T Consensus 557 aD~~~~~I~~~d~dG~~~--~~~~~~~~~~~~P~glavd~-------~~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 557 VDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVFE-------DKVFWTDIINEAIFSANRL 613 (699)
T ss_dssp EETTTTEEEEECSSSSCC--EEECCCSSSCSSCCCCEEET-------TEEEEECSTTTCEEEEETT
T ss_pred EecCCCeEEEEccCCCce--EEEEecCCcCCCceEeEEEC-------CEEEEEeCCCCeEEEEEcc
Confidence 555678899999875421 11211111122334556654 3567777777889888754
No 306
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.58 E-value=0.022 Score=46.65 Aligned_cols=198 Identities=13% Similarity=0.048 Sum_probs=112.5
Q ss_pred ceEEEEEeCCCCEEE-EEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEE-EEEeCCCcEEEEEceecCCc
Q 038537 91 CVSCMAFYHAEGLLY-TGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFV-FTCSSDGSVKIWRRVYRENS 168 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~ 168 (358)
.+..++|.+.+..|+ +-...+.|..+++..... ....+...-.....+++.+.+..| ++-...+.|.++++.... .
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~ 113 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-R 113 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-CCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-eEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-E
Confidence 367899998655554 445568899999876531 111112222456788998755444 454567789999875322 1
Q ss_pred ceeeeeecccCCceeEEEEeecCCCcEEEEee--cCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEe-eC
Q 038537 169 HTLTMTLKFQQSSVNALALSSFFDNYFLYSGS--SDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSG-SE 245 (358)
Q Consensus 169 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 245 (358)
..+ ..........+++.| .+..|+.+. ..+.|...++..... ..... .......-+++++++..|+.+ ..
T Consensus 114 ~~l---~~~~~~~P~giavdp--~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~-~~l~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 114 KVL---FWQELDQPRAIALDP--SSGFMYWTDWGEVPKIERAGMDGSSR-FIIIN-SEIYWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp EEE---ECSSCSSEEEEEEEG--GGTEEEEEECSSSCEEEEEETTSCSC-EEEEC-SSCSCEEEEEEETTTTEEEEEETT
T ss_pred EEE---EeCCCCCccEEEEeC--CCCEEEEEecCCCCEEEEEEcCCCCe-EEEEE-CCCCCccEEEEeccCCEEEEEECC
Confidence 111 122345678899987 544555444 357788888764111 11100 001112335667655555544 46
Q ss_pred CCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 246 DTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 246 dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.+.|..+|+..... +.+ ..+......++++.. +.++++-...+.|..++..+
T Consensus 187 ~~~I~~~d~dG~~~--~~~--~~~~~~~P~glav~~-------~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 187 LNFIHKSNLDGTNR--QAV--VKGSLPHPFALTLFE-------DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp TTEEEEEETTSCSC--EEE--ECSCCSCEEEEEEET-------TEEEEEETTTTEEEEEETTT
T ss_pred CCEEEEEcCCCCce--EEE--ecCCCCCceEEEEeC-------CEEEEEecCCCeEEEEECCC
Confidence 78899999875421 111 222334456777754 45677777778888888753
No 307
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=97.57 E-value=0.023 Score=46.52 Aligned_cols=149 Identities=10% Similarity=0.083 Sum_probs=79.5
Q ss_pred CCCEEEEEecC-------CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC------CCcEEEEEceecC
Q 038537 100 AEGLLYTGSFD-------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS------DGSVKIWRRVYRE 166 (358)
Q Consensus 100 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~ 166 (358)
++.+++.|+.+ ..+.+||..+.++..+..+......-..+. .++.+++.|+. -..+.+||+.+..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 66777777764 358889998887665544332211222222 35666677664 2358888875432
Q ss_pred CcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC-----cEEEEEccCCcCCccccceeecccceeEEEeeeCCEEE
Q 038537 167 NSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG-----SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIF 241 (358)
Q Consensus 167 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 241 (358)
+.......... .-.+++.. ++.+++.|+.++ .+.+||+.+.. ...............+...++.+++
T Consensus 187 --W~~~~~~p~~r-~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v 258 (318)
T 2woz_A 187 --WKDLAPMKTPR-SMFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKTNK--WEVMTEFPQERSSISLVSLAGSLYA 258 (318)
T ss_dssp --EEEECCCSSCC-BSCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTTCC--EEECCCCSSCCBSCEEEEETTEEEE
T ss_pred --EEECCCCCCCc-ccceEEEE---CCEEEEEcCcCCCCccceEEEEECCCCe--EEECCCCCCcccceEEEEECCEEEE
Confidence 22221111111 11222332 677888877543 46788887632 2222112111112233345677777
Q ss_pred EeeCC--------------CeEEEEEcCCCc
Q 038537 242 SGSED--------------TTIRVWRRAEGG 258 (358)
Q Consensus 242 ~~~~d--------------g~i~iwd~~~~~ 258 (358)
.|+.+ ..+.+||+.+.+
T Consensus 259 ~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 259 IGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp ECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred ECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 77754 357888888774
No 308
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.52 E-value=0.059 Score=50.02 Aligned_cols=201 Identities=9% Similarity=0.013 Sum_probs=108.5
Q ss_pred CCceEEEEEeCCCCEEE-EEecCCeEEEEEccCCcc--cccccccccccCeEEEEEcCCCCEEEEE-eCCCcEEEEEcee
Q 038537 89 RDCVSCMAFYHAEGLLY-TGSFDKTVKAWRVLDKRC--TCVDSFVAHESNVNAIVVNQDDGFVFTC-SSDGSVKIWRRVY 164 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~ 164 (358)
...+..|+|.+.+..|+ +-...+.|+.+++..... .....+.........|++.+.++.|+.+ ...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 34578899998555554 445567898888875321 0112222233456789998877555544 4578899888753
Q ss_pred cCCcceeeeeecccCCceeEEEEeecCCCcEEEEee-cC-CcEEEEEccCCcCCccccceeecc--cceeEEEeeeCCEE
Q 038537 165 RENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS-SD-GSINFWEKDKMSGGFNHGGFLQGH--CFAVLCLVAIEKLI 240 (358)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l 240 (358)
.. .. ............|++.| ....|+.+. .. +.|...++..... ..+ .... .-.-+++++.+..|
T Consensus 503 ~~-~~---~l~~~~l~~P~gIaVDp--~~g~LYwtD~g~~~~I~~~~~dG~~~-~~l---v~~~l~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 503 VK-RK---TLFRENGSKPRAIVVDP--VHGFMYWTDWGTPAKIKKGGLNGVDI-YSL---VTENIQWPNGITLDLLSGRL 572 (791)
T ss_dssp SS-EE---EEEECTTCCEEEEEEET--TTTEEEEEECSSSCEEEEEETTSCCE-EEE---ECSSCSCEEEEEEETTTTEE
T ss_pred Ce-EE---EEEeCCCCCcceEEEec--CCCCEEEecCCCCCeEEEEecCCCce-EEE---EeCCCCCceEEEEecCCCeE
Confidence 22 11 11222334578999998 544454443 33 6788888764211 111 1111 12225556555555
Q ss_pred EEe-eCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 241 FSG-SEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 241 ~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+.+ .....|...++..... ..+..-.+.-....+|++.. +.++++-...+.|...+..+
T Consensus 573 YwaD~~~~~I~~~d~dG~~~--~~v~~~~~~l~~P~glav~~-------~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 573 YWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVFE-------DKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp EEEETTTTEEEEEETTSCSC--EEEEECTTTTSSEEEEEEET-------TEEEEEETTTTEEEEEETTT
T ss_pred EEEeCCCCcEEEEecCCCce--EEEecCCCccCCCCEEEEeC-------CEEEEEECCCCEEEEEeCCC
Confidence 554 4567899999876532 11211111222345676644 35666666667777766443
No 309
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=97.51 E-value=0.03 Score=46.63 Aligned_cols=183 Identities=9% Similarity=0.022 Sum_probs=92.2
Q ss_pred CCCEEEEEec-C---------CeEEEEEccCCccccccccc-ccccCeEEEEEcCCCCEEEEEeCC--------------
Q 038537 100 AEGLLYTGSF-D---------KTVKAWRVLDKRCTCVDSFV-AHESNVNAIVVNQDDGFVFTCSSD-------------- 154 (358)
Q Consensus 100 ~~~~l~~~~~-d---------g~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-------------- 154 (358)
++.+++.|+. + ..+.+||+.+.++..+..+. .......++. .++.+++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ 142 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA 142 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence 5677777766 2 46889999988876655543 2122222233 467777888754
Q ss_pred -------------------------CcEEEEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec------CC
Q 038537 155 -------------------------GSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS------DG 203 (358)
Q Consensus 155 -------------------------g~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~------dg 203 (358)
..+.+||+.+.. +.....+......-.+++.. ++.+++.|+. ..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~ 217 (357)
T 2uvk_A 143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQ--WSYAGESPWYGTAGAAVVNK---GDKTWLINGEAKPGLRTD 217 (357)
T ss_dssp TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTE--EEEEEECSSCCCBSCEEEEE---TTEEEEECCEEETTEECC
T ss_pred CCcccchhhhhhhhccccccccCCcccEEEEeCCCCc--EEECCCCCCCCcccccEEEE---CCEEEEEeeecCCCcccC
Confidence 468888875432 22222221111111233333 6777777764 34
Q ss_pred cEEEEEccCCcCCccccceeecc--cceeEEEeeeCCEEEEeeCC----------------------CeEEEEEcCCCce
Q 038537 204 SINFWEKDKMSGGFNHGGFLQGH--CFAVLCLVAIEKLIFSGSED----------------------TTIRVWRRAEGGC 259 (358)
Q Consensus 204 ~i~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d----------------------g~i~iwd~~~~~~ 259 (358)
.+..||+............+... .....+...++.+++.|+.+ ..+.+||+.+.+.
T Consensus 218 ~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W 297 (357)
T 2uvk_A 218 AVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKW 297 (357)
T ss_dssp CEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---C
T ss_pred ceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCce
Confidence 57778762211222221111111 11122344567777777732 2478899987653
Q ss_pred eeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCC
Q 038537 260 YHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQ 299 (358)
Q Consensus 260 ~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg 299 (358)
+.+..+......-.++. .+ +++++.||.++
T Consensus 298 --~~~~~~p~~r~~~~~~~--~~------~~i~v~GG~~~ 327 (357)
T 2uvk_A 298 --DKSGELSQGRAYGVSLP--WN------NSLLIIGGETA 327 (357)
T ss_dssp --EEEEECSSCCBSSEEEE--ET------TEEEEEEEECG
T ss_pred --eeCCCCCCCcccceeEE--eC------CEEEEEeeeCC
Confidence 44444433222222222 23 67888888654
No 310
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.51 E-value=0.029 Score=46.20 Aligned_cols=232 Identities=7% Similarity=-0.010 Sum_probs=110.4
Q ss_pred ccceEEEEec-CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEE
Q 038537 29 HGEVRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTG 107 (358)
Q Consensus 29 ~~~v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 107 (358)
...+.++.+. ++.++.++.+|.| +...+.++.-...... .......+.++.+.+ +. ++.+
T Consensus 35 ~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~----------------~~~~~~~~~~i~~~~-~~-~~~~ 95 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLV----------------LDHSDYRFNSVSFQG-NE-GWIV 95 (327)
T ss_dssp SSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCC----------------CSCCCCEEEEEEEET-TE-EEEE
T ss_pred CCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCC----------------CCCCCccEEEEEecC-Ce-EEEE
Confidence 4568888873 4444446667765 3333333321111100 011234578899986 44 4445
Q ss_pred ecCCeEEEEEccCCc-ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEE
Q 038537 108 SFDKTVKAWRVLDKR-CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALA 186 (358)
Q Consensus 108 ~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~ 186 (358)
+.++.|.. ..+.++ +..+.....+...+..+.+.+++..++++ .+|.| |....+....... .......+..+.
T Consensus 96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG~tW~~~--~~~~~~~~~~~~ 169 (327)
T 2xbg_A 96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRTKDSGKNWQAL--VQEAIGVMRNLN 169 (327)
T ss_dssp EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEESSTTSSEEEE--ECSCCCCEEEEE
T ss_pred ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEEcCCCCCCEEe--ecCCCcceEEEE
Confidence 56675443 222222 22222211233457788877666655554 56654 3222222333322 223345678888
Q ss_pred EeecCCCcEEEEeecCCcEEE-EEccCCcCCccccceeecccceeE--EEeeeCCEEEEeeCCCeEEEEEcCCCceeeee
Q 038537 187 LSSFFDNYFLYSGSSDGSINF-WEKDKMSGGFNHGGFLQGHCFAVL--CLVAIEKLIFSGSEDTTIRVWRRAEGGCYHEC 263 (358)
Q Consensus 187 ~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 263 (358)
+.+ ++.+++++. +|.+.. .|-.. ....... ......+. .+.+++.++ .++.+|.+++.+...++ .++.
T Consensus 170 ~~~--~~~~~~~g~-~G~~~~S~d~gG--~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~-tW~~ 240 (327)
T 2xbg_A 170 RSP--SGEYVAVSS-RGSFYSTWEPGQ--TAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSE-NWGE 240 (327)
T ss_dssp ECT--TSCEEEEET-TSSEEEEECTTC--SSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEE-EECC
T ss_pred EcC--CCcEEEEEC-CCcEEEEeCCCC--CceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCC-eeEe
Confidence 887 677666654 454443 33211 1111111 11122233 334555544 45567887776433231 1111
Q ss_pred eeee-cCcccceEEEEeecccceeeeCeEEEEccCCCcE
Q 038537 264 LAVL-DGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTF 301 (358)
Q Consensus 264 ~~~~-~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v 301 (358)
+..- ..+...+.++.+.++ +.+++++. +|.|
T Consensus 241 ~~~~~~~~~~~~~~v~~~~~------~~~~~~g~-~g~i 272 (327)
T 2xbg_A 241 LLSPLRRNSVGFLDLAYRTP------NEVWLAGG-AGAL 272 (327)
T ss_dssp CBCTTSSCCSCEEEEEESSS------SCEEEEES-TTCE
T ss_pred ccCCcccCCcceEEEEecCC------CEEEEEeC-CCeE
Confidence 1111 012345889999886 56666654 6666
No 311
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.48 E-value=0.024 Score=49.16 Aligned_cols=163 Identities=7% Similarity=0.013 Sum_probs=91.5
Q ss_pred ceEEEEEeC-CCCEEEEEec-CCeEEEEEccCCccccccccc-ccccCeEEEEE-------cCCCCEEEEEeCCC-c---
Q 038537 91 CVSCMAFYH-AEGLLYTGSF-DKTVKAWRVLDKRCTCVDSFV-AHESNVNAIVV-------NQDDGFVFTCSSDG-S--- 156 (358)
Q Consensus 91 ~v~~~~~~~-~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~-------~~~~~~l~~~~~dg-~--- 156 (358)
....|+|+| ++..|+.+.. .+.|++.|+.++....+.... ........|+| +++++.|+++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 3555555544 467899998887633322211 12235899999 99999666666554 2
Q ss_pred ---EEEEEceecCCcce-e-eeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEcc-------CCcC--C---c--
Q 038537 157 ---VKIWRRVYRENSHT-L-TMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKD-------KMSG--G---F-- 217 (358)
Q Consensus 157 ---i~~wd~~~~~~~~~-~-~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~-------~~~~--~---~-- 217 (358)
|.+++......... . ...+.. -.....++++| .++.++++-..++.|..+|+. +... + .
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp-~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHP-INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECT-TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred CceEEEEecCCCCceeecccceeecc-CCCceEEEEcC-CCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 55665332111110 0 011111 23456778876 245566666678889999987 3221 0 0
Q ss_pred ---cccceee-cccceeEEEeeeCCEEE-EeeCCCeEEEEEcC
Q 038537 218 ---NHGGFLQ-GHCFAVLCLVAIEKLIF-SGSEDTTIRVWRRA 255 (358)
Q Consensus 218 ---~~~~~~~-~~~~~~~~~~~~~~~l~-~~~~dg~i~iwd~~ 255 (358)
....... .....-++++++++.|+ +-.....|+.++..
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 0000111 11223478888998544 44567789886654
No 312
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.45 E-value=0.097 Score=50.87 Aligned_cols=179 Identities=8% Similarity=0.035 Sum_probs=100.7
Q ss_pred eEEEEEccCCcccccccccccccCeEEEEE---cC-CCCEEEEEe----------CCCcEEEEEceecCCcceeeeeecc
Q 038537 112 TVKAWRVLDKRCTCVDSFVAHESNVNAIVV---NQ-DDGFVFTCS----------SDGSVKIWRRVYRENSHTLTMTLKF 177 (358)
Q Consensus 112 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~---~~-~~~~l~~~~----------~dg~i~~wd~~~~~~~~~~~~~~~~ 177 (358)
.|++.|..+.+......+.. ...+.+++. .. ...++++|+ ..|.|++|++... ..++... ..
T Consensus 808 ~i~lidp~t~~~i~~~~l~~-nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~--kL~lv~~-~~ 883 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQ-NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG--KLQTVAE-KE 883 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCT-TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETT--EEEEEEE-EE
T ss_pred EEEEEeCCCCeEEEEEeCCC-CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECC--EEEEEEE-EE
Confidence 45666655444111122222 234555543 22 246888887 3588999998622 2222222 22
Q ss_pred cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 178 QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 178 ~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
..+.+++++-. +|. |++| ...+|++|++...+. .........+ ..+..+...+++++.|..-..|.++..+..
T Consensus 884 v~g~v~al~~~---~g~-Lla~-ig~~l~vy~l~~~~~-L~~~~~~~~~-i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~ 956 (1158)
T 3ei3_A 884 VKGAVYSMVEF---NGK-LLAS-INSTVRLYEWTTEKE-LRTECNHYNN-IMALYLKTKGDFILVGDLMRSVLLLAYKPM 956 (1158)
T ss_dssp ESSCEEEEEEE---TTE-EEEE-ETTEEEEEEECTTSC-EEEEEEECCC-SCEEEEEEETTEEEEEESSBCEEEEEEETT
T ss_pred cCCcCEEEeee---CCE-EEEE-cCCEEEEEECCCCce-EEEEeecccc-EEEEEEeccCCEEEEEEhhheEEEEEEEcC
Confidence 36778887765 564 4444 357899999976321 1110000111 123456667899999998777777655433
Q ss_pred ceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 258 GCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 258 ~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
......+. -..+...++++.+-.+ ..++.+..+|.+.+......
T Consensus 957 ~~~L~~~a-~D~~~~~vta~~~ld~-------~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 957 EGNFEEIA-RDFNPNWMSAVEILDD-------DNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp TTEEEEEE-ECCSCBCEEEEEEEET-------TEEEEEETTSEEEEEEECTT
T ss_pred CCeEEEEE-eecccccEEEEEEEcc-------CcEEEEcCCCcEEEEecCCC
Confidence 21112221 1234567888888765 36777899999999888753
No 313
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.34 E-value=0.043 Score=44.44 Aligned_cols=226 Identities=9% Similarity=0.031 Sum_probs=127.2
Q ss_pred CCcEEEEeCCCceeeeeeeecccceEEEEe-cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccc
Q 038537 8 STRIRVWRQPDCVERGFIKARHGEVRAILA-HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQ 86 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (358)
..++.|+|+++.+.++.+.-. ..|.-..| +.+.|+-.+ +..|.-|++....... ..+.....+.
T Consensus 86 g~~LQiFnletK~klks~~~~-e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~-------------kvFdR~~~L~ 150 (365)
T 2xzh_A 86 GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPV-------------KMFDRHSSLA 150 (365)
T ss_dssp TTEEEEEETTTTEEEEEEECS-SCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCE-------------EEEECCGGGT
T ss_pred CCeEEEechHHhhhhcceecC-CccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCc-------------eeeecchhcc
Confidence 567889999888777666543 45555555 566666655 4479999987522110 1122222332
Q ss_pred cCCCceEEEEEeCCCCEEEEEe-------cCCeEEEEEccCCcccccccccccccCeEEEEEcCC---CCEEEEEeC---
Q 038537 87 QHRDCVSCMAFYHAEGLLYTGS-------FDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQD---DGFVFTCSS--- 153 (358)
Q Consensus 87 ~h~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~--- 153 (358)
...|..-..+++.++++..+ -.|.+.+|..+.+. .+.+.+|.+.-..+....+ ..+++.+..
T Consensus 151 --~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 151 --GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp --TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE---EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred --cceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc---cceeeeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 34566667777887665433 23788899987664 4556666554443333211 123333332
Q ss_pred CCcEEEEEceecC-Ccceee-------eeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec
Q 038537 154 DGSVKIWRRVYRE-NSHTLT-------MTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG 225 (358)
Q Consensus 154 dg~i~~wd~~~~~-~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 225 (358)
.+.+++-++.... ....+. .......+-..++..++ ....+..-+.-|.|++||++++... ....+..
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~--kygviyviTK~G~ihlyDleTgt~i--~~nrIS~ 301 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE--KHDVVFLITKYGYIHLYDLETGTCI--YMNRISG 301 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEET--TTTEEEEEETTSEEEEEETTTCCEE--EEEECCS
T ss_pred CcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecc--cCCEEEEEeCCcEEEEEEcccCcEE--EEeccCC
Confidence 2588898884431 111111 11112234455666776 7778888889999999999995432 2222333
Q ss_pred ccceeEEEeeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 226 HCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
...-+.+-.....-++.....|.|.--.+...
T Consensus 302 d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 302 ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp SCEEEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred CceEEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 33333343334344555557777766666554
No 314
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.32 E-value=0.086 Score=47.55 Aligned_cols=221 Identities=12% Similarity=0.065 Sum_probs=113.7
Q ss_pred CCCcEEEEeCCCce-eeeeeeecccceEEEEec--CCEEEEE-eCCceEEEEecccccccccccccccCCCceeeeecCC
Q 038537 7 SSTRIRVWRQPDCV-ERGFIKARHGEVRAILAH--DNMLFTT-NKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82 (358)
Q Consensus 7 ~dg~v~vw~~~~~~-~~~~~~~h~~~v~~i~~~--~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
....|+..++.... ....+...-....++.++ ++.|+.+ ...+.|..++++.......
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------ 77 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------ 77 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------
Confidence 34678888887643 222222223345566553 4555544 4467888888775421110
Q ss_pred CccccCCCceEEEEEeCCCCEEEE-EecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC--CCcEEE
Q 038537 83 NTQQQHRDCVSCMAFYHAEGLLYT-GSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS--DGSVKI 159 (358)
Q Consensus 83 ~~~~~h~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~ 159 (358)
.+.........+++.+.++.|+. -...+.|.+.++.......+ ....-.....|+++|.+..|+.+.. .+.|..
T Consensus 78 -v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l--~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r 154 (619)
T 3s94_A 78 -VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL--FWQELDQPRAIALDPSSGFMYWTDWGEVPKIER 154 (619)
T ss_dssp -EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--ECSSCSCCCCEEEETTTTEEEEEECSSSCEEEE
T ss_pred -EEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEE--EeCCCCCCceEEEecCCCeEEEeccCCCCEEEE
Confidence 00111235788999986555554 45668999999876541111 1123345678999997666666553 345555
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEE-EeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeC-
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLY-SGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE- 237 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 237 (358)
.++... ....+. ...-.....+++++ ++..|+ +-...+.|..+|+....... .......|+. .+..++
T Consensus 155 ~~~dG~-~~~~l~---~~~~~~P~Glald~--~~~~LY~aD~~~~~I~~~~~dG~~~~~-~~~~~~~~P~---gi~~~~~ 224 (619)
T 3s94_A 155 AGMDGS-SRFIII---NSEIYWPNGLTLDY--EEQKLYWADAKLNFIHKSNLDGTNRQA-VVKGSLPHPF---ALTLFED 224 (619)
T ss_dssp EETTSC-SCEEEE---CSSCSSEEEEEEET--TTTEEEEEETTTCCEEEESSSCCEEC----------CC---CEEESSS
T ss_pred EECCCC-ceEEEE---eCCCCCCcEEEEEc--cCCEEEEEeCCCCeEEEecCCCCccEE-EEeCCCCCce---EEEEeCC
Confidence 554321 111111 11234678899987 544444 44456788888886522211 1111112332 233333
Q ss_pred CEEEEeeCCCeEEEEEcCCCc
Q 038537 238 KLIFSGSEDTTIRVWRRAEGG 258 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~ 258 (358)
.++++-..++.|...|..+++
T Consensus 225 ~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 225 ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp EEEEECTTTCSEEEEESSSCC
T ss_pred EEEEecCCCCEEEEEECCCCc
Confidence 344454567789888887764
No 315
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.31 E-value=0.047 Score=45.97 Aligned_cols=115 Identities=13% Similarity=0.140 Sum_probs=76.4
Q ss_pred ceEEEEEeCCCCEEEEEecCCeEEEEEccCCccccc----------ccccc------cccCeEEEEEcC---CCCEEEEE
Q 038537 91 CVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCV----------DSFVA------HESNVNAIVVNQ---DDGFVFTC 151 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------~~~~~------~~~~v~~~~~~~---~~~~l~~~ 151 (358)
.|..+..+|+|++||..+. ..|.|..+..+..... ..+.- ...+|..+.|+| .+..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 4677999999999988765 5799988873321111 11111 246799999999 45689999
Q ss_pred eCCCcEEEEEceecCCcce-eee-----eecccCCceeEEEEeecCCCcEEEEee--cCCcEEEE
Q 038537 152 SSDGSVKIWRRVYRENSHT-LTM-----TLKFQQSSVNALALSSFFDNYFLYSGS--SDGSINFW 208 (358)
Q Consensus 152 ~~dg~i~~wd~~~~~~~~~-~~~-----~~~~~~~~i~~~~~~~~~~~~~l~~~~--~dg~i~i~ 208 (358)
..|+.|++||+........ +.. ........|.+++|.. ++-.|...+ ..|.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~--~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK--DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT--TSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC--CCcEEEEEecCCCCCEEEE
Confidence 9999999999976332222 111 1112226788888987 666666644 77877654
No 316
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.06 E-value=0.013 Score=44.49 Aligned_cols=105 Identities=6% Similarity=-0.029 Sum_probs=62.8
Q ss_pred ceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCe--------EEEEEcCCCCEEEEEeCCCcEEEEEc
Q 038537 91 CVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNV--------NAIVVNQDDGFVFTCSSDGSVKIWRR 162 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~~l~~~~~dg~i~~wd~ 162 (358)
.++.++|+|++.+.+. .+|.+.-.+..+.. ...-+ .....| .++.|.|++.+.++ .||.|+-++.
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~--~~~W~-~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHD--NDNWM-GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCST--TCCHH-HHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCC--ccccc-ccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 5779999998885555 77877666654433 11111 112233 78899999988777 5698877764
Q ss_pred eecCCccee---eeeecccCCceeEEEEeecCCCcEEEEeecCCcEE
Q 038537 163 VYRENSHTL---TMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSIN 206 (358)
Q Consensus 163 ~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~ 206 (358)
.+.....-+ ...-...=..+..|.+.| ++.+.++. |+.++
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p--~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHP--NGYLYAVH--GQQFY 157 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECT--TSCEEEEE--TTEEE
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECC--CceEEEEe--CCcEE
Confidence 322211100 000011114678888888 88777776 77744
No 317
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.00 E-value=0.12 Score=42.93 Aligned_cols=192 Identities=11% Similarity=0.124 Sum_probs=106.0
Q ss_pred ceEEEEEeCCCCEEEEE------------ecCCeEEEEEccCC--ccccccc----ccccccCeEEEEEcC--CCC-EEE
Q 038537 91 CVSCMAFYHAEGLLYTG------------SFDKTVKAWRVLDK--RCTCVDS----FVAHESNVNAIVVNQ--DDG-FVF 149 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~------------~~dg~i~iwd~~~~--~~~~~~~----~~~~~~~v~~~~~~~--~~~-~l~ 149 (358)
..-.+...|+|..++++ ..+|.|.++|..+. +...+.. +.........+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34566677877554444 26899999998743 2112211 111234677788765 343 344
Q ss_pred EE-eC--CCcEEEEEceecCCcceeeeeeccc-CCceeEEEEeecCCCcEEEEeec-----------------CCcEEEE
Q 038537 150 TC-SS--DGSVKIWRRVYRENSHTLTMTLKFQ-QSSVNALALSSFFDNYFLYSGSS-----------------DGSINFW 208 (358)
Q Consensus 150 ~~-~~--dg~i~~wd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~l~~~~~-----------------dg~i~i~ 208 (358)
++ .. +..|.+|++..............+. -...+.+.+.+ ++.++++... .|.|..+
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~ 208 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY 208 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEEE
Confidence 44 33 5678898887654444444443322 24578899988 8877776541 2445555
Q ss_pred EccCCcCCccccceeec-ccceeEEEeeeCCEEEEee-CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeec-ccce
Q 038537 209 EKDKMSGGFNHGGFLQG-HCFAVLCLVAIEKLIFSGS-EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASL-EMEK 285 (358)
Q Consensus 209 d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~-~~~~ 285 (358)
|... ... ...+ ...+=.+++|+++.|+.+. ..+.|+.|++...... .....+ ...+..-.+++.+ +
T Consensus 209 d~~~----~~~--~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l-~~~~~~-~~~g~PDGi~vD~e~--- 277 (355)
T 3sre_A 209 SPND----VRV--VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTL-TPLRVL-SFDTLVDNISVDPVT--- 277 (355)
T ss_dssp CTTC----CEE--EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCE-EEEEEE-ECSSEEEEEEECTTT---
T ss_pred ECCe----EEE--eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcE-ecCEEE-eCCCCCceEEEeCCC---
Confidence 4321 111 1111 2233478889997776654 6788999998643211 112222 1234566778877 5
Q ss_pred eeeCeEEEEccCC
Q 038537 286 VVMGFLVYSSSLD 298 (358)
Q Consensus 286 ~~~~~~l~s~~~d 298 (358)
|.+.+++..+
T Consensus 278 ---G~lwva~~~~ 287 (355)
T 3sre_A 278 ---GDLWVGCHPN 287 (355)
T ss_dssp ---CCEEEEEESC
T ss_pred ---CcEEEEecCC
Confidence 5666655433
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.99 E-value=0.13 Score=43.47 Aligned_cols=226 Identities=9% Similarity=0.038 Sum_probs=128.8
Q ss_pred CCcEEEEeCCCceeeeeeeecccceEEEEe-cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccc
Q 038537 8 STRIRVWRQPDCVERGFIKARHGEVRAILA-HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQ 86 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (358)
..++.|+|+++.+.++.+.-.. .|.-..| +.+.|+-.+ +..|.-|++....... ..+.....+.
T Consensus 85 g~~lQiFnle~K~klks~~~~e-~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~-------------kvFdR~~~L~ 149 (494)
T 1bpo_A 85 GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPV-------------KMFDRHSSLA 149 (494)
T ss_dssp TTEEEEEETTTTEEEEEEECSS-CCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCE-------------EEEECCGGGT
T ss_pred CCeEEEEchHHhhhhcceecCC-CceEEEecCCCeEEEEc-CCeeEEecccCCCCch-------------hheecchhcc
Confidence 5678888888887776665433 4444444 566666655 4579999987522110 1122222332
Q ss_pred cCCCceEEEEEeCCCCEEEEEe-------cCCeEEEEEccCCcccccccccccccCeEEEEEcCCC---CEEEEEeCC--
Q 038537 87 QHRDCVSCMAFYHAEGLLYTGS-------FDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDD---GFVFTCSSD-- 154 (358)
Q Consensus 87 ~h~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d-- 154 (358)
...|..-..+++.++++..+ -.|.+.+|..+.+. .+.+.+|...-..+....+. ..++.+...
T Consensus 150 --~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~---sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 150 --GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp --TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC---EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred --cceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc---cchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 35566777778888766433 24788899987664 55666776655544443221 234444332
Q ss_pred -CcEEEEEceecC-Cccee-------eeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec
Q 038537 155 -GSVKIWRRVYRE-NSHTL-------TMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG 225 (358)
Q Consensus 155 -g~i~~wd~~~~~-~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 225 (358)
+.+++-++.... ....+ ........+-..++.+++ ....+..-+.-|.|++||+.++...+ ...+..
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~--kygviyviTK~G~i~lyDleTgt~i~--~nrIs~ 300 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE--KHDVVFLITKYGYIHLYDLETGTCIY--MNRISG 300 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET--TTTEEEEEETTSEEEEEETTTCCEEE--EEECCS
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc--cCCEEEEEecCceEEEEecccceeee--eecccC
Confidence 789999885431 11111 011112234455677776 77888888899999999999954322 222333
Q ss_pred ccceeEEEeeeCCEEEEeeCCCeEEEEEcCCC
Q 038537 226 HCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEG 257 (358)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 257 (358)
...-+.+-.....-++.....|.|.--.+...
T Consensus 301 ~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 301 ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp SCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred CceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 33333333333344555557777766666554
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.93 E-value=0.1 Score=43.31 Aligned_cols=160 Identities=9% Similarity=0.091 Sum_probs=84.5
Q ss_pred eEEEEEcCCCCEEEEE------------eCCCcEEEEEceecCCcc-eeeee---ecccCCceeEEEEeecCCCc--EEE
Q 038537 136 VNAIVVNQDDGFVFTC------------SSDGSVKIWRRVYRENSH-TLTMT---LKFQQSSVNALALSSFFDNY--FLY 197 (358)
Q Consensus 136 v~~~~~~~~~~~l~~~------------~~dg~i~~wd~~~~~~~~-~~~~~---~~~~~~~i~~~~~~~~~~~~--~l~ 197 (358)
...+...|+|..++++ ..+|.|.++|+.+..... ++... +....-....+.+.+..++. +++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 4455566666544444 268999999986432221 11111 11123466777776532332 444
Q ss_pred Eeec--CCcEEEEEccCCcCCccccceeeccc---ceeEEEeeeCCEEEEee-----------------CCCeEEEEEcC
Q 038537 198 SGSS--DGSINFWEKDKMSGGFNHGGFLQGHC---FAVLCLVAIEKLIFSGS-----------------EDTTIRVWRRA 255 (358)
Q Consensus 198 ~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~-----------------~dg~i~iwd~~ 255 (358)
+-.. +..|.+|++........+.....+.. ..-..+.++|.+.++.. ..|.|+-+|.
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~- 210 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP- 210 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence 4333 56788888776433333333333221 12244556677666643 1245555554
Q ss_pred CCceeeeeeeeecCcccceEEEEeecccceeeeCe-EEEEccCCCcEEEEEeee
Q 038537 256 EGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGF-LVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 256 ~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~-~l~s~~~dg~v~iw~~~~ 308 (358)
++. + .+...-..-+.|+|+|+ ++ +.++-+..+.|..|++..
T Consensus 211 -~~~--~---~~~~~l~~pNGia~spD------g~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 211 -NDV--R---VVAEGFDFANGINISPD------GKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp -TCC--E---EEEEEESSEEEEEECTT------SSEEEEEEGGGTEEEEEEECT
T ss_pred -CeE--E---EeecCCcccCcceECCC------CCEEEEEeCCCCeEEEEEECC
Confidence 211 1 11122345689999999 54 445555678899999873
No 320
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.88 E-value=0.18 Score=46.31 Aligned_cols=113 Identities=11% Similarity=0.084 Sum_probs=64.0
Q ss_pred CCCCEEEEEecCC--eEEEEEccCCccccccc---ccccccCeEEEEEcCC-CCEEEEEeC--C-----CcEEEEEceec
Q 038537 99 HAEGLLYTGSFDK--TVKAWRVLDKRCTCVDS---FVAHESNVNAIVVNQD-DGFVFTCSS--D-----GSVKIWRRVYR 165 (358)
Q Consensus 99 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----g~i~~wd~~~~ 165 (358)
.++.+++.|+.++ .+.+||..+.++..+.. .........++.+..+ +..++.|+. + ..+.+||+.+.
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 3778888887755 69999999888765543 2222222233555554 667777765 2 35888898765
Q ss_pred CC----cceeeeeecccCCceeEEEEeecCCCcEEEEeecC--------CcEEEEEccCC
Q 038537 166 EN----SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSD--------GSINFWEKDKM 213 (358)
Q Consensus 166 ~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~ 213 (358)
.- .+............-.++.... ++.+++.|+.+ ..+.+||+.+.
T Consensus 579 ~w~~~~~W~~~~~~p~~~R~~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 579 NATEPITVIKKLQHPLFQRYGSQIKYIT--PRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp CSSCCEEEEEEEECGGGCCBSCEEEEEE--TTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred ccccceEEEEcCCCCCCCcccceEEEeC--CCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 41 0111111111111112222322 37888888753 45899998874
No 321
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.87 E-value=0.13 Score=41.64 Aligned_cols=233 Identities=9% Similarity=0.097 Sum_probs=127.0
Q ss_pred EecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEE
Q 038537 36 LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKA 115 (358)
Q Consensus 36 ~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~i 115 (358)
.+..+.+|.=. ..++.|+|+++...++... ....|.-=.|-.+ +.|+..+. ..|.-
T Consensus 75 nP~~~ViALra-g~~LQiFnletK~klks~~---------------------~~e~VvfWkWis~-~~L~lVT~-taVyH 130 (365)
T 2xzh_A 75 NPASKVIALKA-GKTLQIFNIEMKSKMKAHT---------------------MTDDVTFWKWISL-NTVALVTD-NAVYH 130 (365)
T ss_dssp CSSSSEEEEEE-TTEEEEEETTTTEEEEEEE---------------------CSSCEEEEEECSS-SEEEEEES-SEEEE
T ss_pred CCCccEEEEec-CCeEEEechHHhhhhccee---------------------cCCccEEEEecCC-CeEEEEcC-CcEEE
Confidence 33445555444 6789999999887664422 2334665666543 34444443 57999
Q ss_pred EEccCCcccccccccccc----cCeEEEEEcCCCCEEEEEeC-------CCcEEEEEceecCCcceeeeeecccCCceeE
Q 038537 116 WRVLDKRCTCVDSFVAHE----SNVNAIVVNQDDGFVFTCSS-------DGSVKIWRRVYRENSHTLTMTLKFQQSSVNA 184 (358)
Q Consensus 116 wd~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-------dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~ 184 (358)
|++.... .+...+..|. ..|..-..+++.+.++..+- .|.+.+|..+. .....+++|...-..
T Consensus 131 Ws~~~~s-~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-----~~sQ~ieGhaa~F~~ 204 (365)
T 2xzh_A 131 WSMEGES-QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-----KVSQPIEGHAASFAQ 204 (365)
T ss_dssp EESSTTC-CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-----TEEEEECCSEEEEEE
T ss_pred EcccCCC-CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-----cccceeeeeeeeeEE
Confidence 9997532 3555554443 45667777888887665432 36677787532 223344444433322
Q ss_pred EEEeecCC-CcEEEEeec---CCcEEEEEccCCc-CCccccce-----eec--ccceeEEE--eeeCCEEEEeeCCCeEE
Q 038537 185 LALSSFFD-NYFLYSGSS---DGSINFWEKDKMS-GGFNHGGF-----LQG--HCFAVLCL--VAIEKLIFSGSEDTTIR 250 (358)
Q Consensus 185 ~~~~~~~~-~~~l~~~~~---dg~i~i~d~~~~~-~~~~~~~~-----~~~--~~~~~~~~--~~~~~~l~~~~~dg~i~ 250 (358)
+.+.-.+. ..+++.+.. .+++++-++.... ........ +.. ...-..++ +..-..++.-+.-|.|+
T Consensus 205 ~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ih 284 (365)
T 2xzh_A 205 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIH 284 (365)
T ss_dssp ECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEE
Confidence 22221111 123333322 2589999986531 11111110 000 11112233 34456888888999999
Q ss_pred EEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 251 VWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 251 iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+||+.++. ++..-+-...+|..-+-+.. ..=++.....|.|.--.++.
T Consensus 285 lyDleTgt----~i~~nrIS~d~iF~ta~~~~------~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 285 LYDLETGT----CIYMNRISGETIFVTAPHEA------TAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp EEETTTCC----EEEEEECCSSCEEEEEEEGG------GTEEEEEETTCEEEEEEECT
T ss_pred EEEcccCc----EEEEeccCCCceEEecccCC------CCcEEEEcCCCEEEEEEECc
Confidence 99999994 45544445566665555444 22344444778777666653
No 322
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.82 E-value=0.27 Score=44.41 Aligned_cols=200 Identities=13% Similarity=0.041 Sum_probs=106.9
Q ss_pred CceEEEEEeCCCCEEEEEec-CCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEE-eCCCcEEEEEceecCC
Q 038537 90 DCVSCMAFYHAEGLLYTGSF-DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC-SSDGSVKIWRRVYREN 167 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~ 167 (358)
..+..++|++.+..|+.+.. .+.|..+++..... ....+...-.....+++++.+..|+.+ ...+.|.+.++....
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~-~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~- 117 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-VQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL- 117 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCc-eEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-
Confidence 34788999987766665544 57888888865431 111222222568899999865555544 457889999875332
Q ss_pred cceeeeeecccCCceeEEEEeecCCCcEEEEeec--CCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEe-e
Q 038537 168 SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS--DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSG-S 244 (358)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 244 (358)
...+ ....-.....+++.| .+..|+.+.. .+.|...++..... ..... .......-++++++++.|+.+ .
T Consensus 118 ~~~l---~~~~l~~P~~Iavdp--~~g~ly~tD~g~~~~I~r~~~dG~~~-~~l~~-~~~~~P~Glald~~~~~LY~aD~ 190 (619)
T 3s94_A 118 RKVL---FWQELDQPRAIALDP--SSGFMYWTDWGEVPKIERAGMDGSSR-FIIIN-SEIYWPNGLTLDYEEQKLYWADA 190 (619)
T ss_dssp CEEE---ECSSCSCCCCEEEET--TTTEEEEEECSSSCEEEEEETTSCSC-EEEEC-SSCSSEEEEEEETTTTEEEEEET
T ss_pred EEEE---EeCCCCCCceEEEec--CCCeEEEeccCCCCEEEEEECCCCce-EEEEe-CCCCCCcEEEEEccCCEEEEEeC
Confidence 1111 112345578899987 5444544443 45666666654111 11110 011112235566655555444 4
Q ss_pred CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeC
Q 038537 245 EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVM 309 (358)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~ 309 (358)
..+.|..+|+..... .....+......+|++..+ .++++-...+.|...|..+.
T Consensus 191 ~~~~I~~~~~dG~~~----~~~~~~~~~~P~gi~~~~~-------~ly~td~~~~~V~~~d~~tg 244 (619)
T 3s94_A 191 KLNFIHKSNLDGTNR----QAVVKGSLPHPFALTLFED-------ILYWTDWSTHSILACNKYTG 244 (619)
T ss_dssp TTCCEEEESSSCCEE----C---------CCCEEESSS-------EEEEECTTTCSEEEEESSSC
T ss_pred CCCeEEEecCCCCcc----EEEEeCCCCCceEEEEeCC-------EEEEecCCCCEEEEEECCCC
Confidence 667899988876422 1111111122346666653 56666667778888876543
No 323
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.68 E-value=0.34 Score=43.77 Aligned_cols=218 Identities=14% Similarity=0.033 Sum_probs=123.8
Q ss_pred CCCcEEEEeCCCceeeeeeee-cccceEEEEec--CCE-EEEEeCCceEEEEecccccccccccccccCCCceeeeecCC
Q 038537 7 SSTRIRVWRQPDCVERGFIKA-RHGEVRAILAH--DNM-LFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKS 82 (358)
Q Consensus 7 ~dg~v~vw~~~~~~~~~~~~~-h~~~v~~i~~~--~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (358)
..+.|+..++.+......+.. .-....++.++ ++. +++-..++.|..++++........
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~----------------- 75 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVV----------------- 75 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-----------------
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEE-----------------
Confidence 456799999876543332221 22345667664 344 445556788988888754321100
Q ss_pred CccccCCCceEEEEEeCCCCEEE-EEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC--CCcEEE
Q 038537 83 NTQQQHRDCVSCMAFYHAEGLLY-TGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS--DGSVKI 159 (358)
Q Consensus 83 ~~~~~h~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~ 159 (358)
.........+++.+.+..|+ +-...+.|.+.++.......+ ....-.....|+++|....|..... .+.|..
T Consensus 76 ---~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r 150 (628)
T 4a0p_A 76 ---EFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL--VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDR 150 (628)
T ss_dssp ---CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred ---eCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEE
Confidence 11113456788887655554 445567899999875431111 1123345789999996666666653 456666
Q ss_pred EEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEe-ecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCC
Q 038537 160 WRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSG-SSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEK 238 (358)
Q Consensus 160 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (358)
.++.... ...+. ..-.....+++++ ++..|+.+ ...+.|..+|+..... .. +.........+..++.
T Consensus 151 ~~~dG~~-~~~l~----~~~~~P~GlalD~--~~~~LY~aD~~~~~I~~~d~dG~~~--~v---~~~~l~~P~glav~~~ 218 (628)
T 4a0p_A 151 AAMDGSE-RTTLV----PNVGRANGLTIDY--AKRRLYWTDLDTNLIESSNMLGLNR--EV---IADDLPHPFGLTQYQD 218 (628)
T ss_dssp EETTSCS-CEEEE----CSCSSEEEEEEET--TTTEEEEEETTTTEEEEEETTSCSC--EE---EEECCSCEEEEEEETT
T ss_pred EeCCCCc-eEEEE----CCCCCcceEEEcc--ccCEEEEEECCCCEEEEEcCCCCce--EE---eeccCCCceEEEEECC
Confidence 6653222 11111 1345678899987 55555544 4567899999875322 11 1111222334444445
Q ss_pred EEEEe-eCCCeEEEEEcCCCc
Q 038537 239 LIFSG-SEDTTIRVWRRAEGG 258 (358)
Q Consensus 239 ~l~~~-~~dg~i~iwd~~~~~ 258 (358)
.|+.. ...+.|...|..+++
T Consensus 219 ~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 219 YIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEEETTTTEEEEEETTTCC
T ss_pred EEEEecCCCCEEEEEECCCCC
Confidence 55544 457889999877664
No 324
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.048 Score=44.78 Aligned_cols=204 Identities=10% Similarity=-0.026 Sum_probs=99.1
Q ss_pred CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEE-ecCCeEEEEE
Q 038537 39 DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTG-SFDKTVKAWR 117 (358)
Q Consensus 39 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd 117 (358)
++.++.++.||.|.-.|..+++..+........ ..+. ..+... ..++..++.. +.||.|..++
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~---p~~~------~~~~~~-------~~~~~~~vv~p~~dG~l~a~~ 73 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQ---PLIE------IQEPSR-------LETYETLIIEPFGDGNIYYFN 73 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSC---CSEE------CCCSCT-------TTSSEEEEECCSTTTEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccC---CcEE------ecCCcc-------ccCCcEEEEEECCCCEEEEEE
Confidence 457889999999999999999888766543100 0000 000000 0122333333 5788888888
Q ss_pred ccCCcccccccccc--cccCeEE---EEE-c----CCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccC---CceeE
Q 038537 118 VLDKRCTCVDSFVA--HESNVNA---IVV-N----QDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQ---SSVNA 184 (358)
Q Consensus 118 ~~~~~~~~~~~~~~--~~~~v~~---~~~-~----~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~---~~i~~ 184 (358)
..++.......... ..+++.. ... . ..+..+++|+.+|.+...|+++++..+++........ ....|
T Consensus 74 ~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~ 153 (339)
T 2be1_A 74 AHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDC 153 (339)
T ss_dssp TTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC---------
T ss_pred CCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccc
Confidence 77664221111111 1223321 000 0 1456788999999999999988876665543211000 00001
Q ss_pred EEEe---ecCCCcEEEEeecCCcEEEEEccCCcCCccccc-eeecccce--e---EEEeeeCCEEEEeeCCCeEEEEEcC
Q 038537 185 LALS---SFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGG-FLQGHCFA--V---LCLVAIEKLIFSGSEDTTIRVWRRA 255 (358)
Q Consensus 185 ~~~~---~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~--~---~~~~~~~~~l~~~~~dg~i~iwd~~ 255 (358)
.... ....+..++.+..+..+.+.+ +++. ...... ........ + ..++.++.+ +.++.||.|.-+|..
T Consensus 154 ~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~ 230 (339)
T 2be1_A 154 SPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLD 230 (339)
T ss_dssp -----------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECST
T ss_pred ccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECC
Confidence 1110 001235677777766666665 3321 111100 00000000 0 001123455 456788888888888
Q ss_pred CCceee
Q 038537 256 EGGCYH 261 (358)
Q Consensus 256 ~~~~~~ 261 (358)
++...+
T Consensus 231 ~G~~~W 236 (339)
T 2be1_A 231 FRIARW 236 (339)
T ss_dssp TCCEEE
T ss_pred CCcEEE
Confidence 875433
No 325
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.58 E-value=0.4 Score=43.30 Aligned_cols=196 Identities=10% Similarity=-0.012 Sum_probs=111.6
Q ss_pred CceEEEEEeCCCCEEEEE-ecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEE-eCCCcEEEEEceecCC
Q 038537 90 DCVSCMAFYHAEGLLYTG-SFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC-SSDGSVKIWRRVYREN 167 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~ 167 (358)
..+..++|++.+..|+.+ ..++.|..+++....... .+.........+++++.+..|+.+ ...+.|.+.++....
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~--v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~- 113 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH--VVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH- 113 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE--EEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-
Confidence 347899999876665544 456889999887654211 122222456788998765555444 456788888875332
Q ss_pred cceeeeeecccCCceeEEEEeecCCCcEEEEee--cCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEe-e
Q 038537 168 SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGS--SDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSG-S 244 (358)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 244 (358)
...+ ....-.....+++.| ....|+... ..+.|...++..... ..... ......-++++++++.|+.+ .
T Consensus 114 ~~~l---~~~~l~~P~~iavdp--~~G~lY~tD~g~~~~I~r~~~dG~~~-~~l~~--~~~~P~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 114 RQVL---VWKDLDSPRALALDP--AEGFMYWTEWGGKPKIDRAAMDGSER-TTLVP--NVGRANGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp CEEE---ECSSCCCEEEEEEET--TTTEEEEEECSSSCEEEEEETTSCSC-EEEEC--SCSSEEEEEEETTTTEEEEEET
T ss_pred EEEE---EeCCCCCcccEEEcc--CCCeEEEeCCCCCCEEEEEeCCCCce-EEEEC--CCCCcceEEEccccCEEEEEEC
Confidence 1111 112334568999987 444555444 256777777764221 11111 11111225566655555544 4
Q ss_pred CCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 245 EDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 245 ~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
..+.|..+|+..... +.+ ........+|++.. +.++++-...+.|...|..+
T Consensus 186 ~~~~I~~~d~dG~~~--~v~---~~~l~~P~glav~~-------~~ly~tD~~~~~I~~~dk~t 237 (628)
T 4a0p_A 186 DTNLIESSNMLGLNR--EVI---ADDLPHPFGLTQYQ-------DYIYWTDWSRRSIERANKTS 237 (628)
T ss_dssp TTTEEEEEETTSCSC--EEE---EECCSCEEEEEEET-------TEEEEEETTTTEEEEEETTT
T ss_pred CCCEEEEEcCCCCce--EEe---eccCCCceEEEEEC-------CEEEEecCCCCEEEEEECCC
Confidence 667899999876532 222 22223345777765 35666666677777777543
No 326
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.23 Score=40.79 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=66.1
Q ss_pred CEEeeeCCCcEEEEeCCCceeeeeeeec-ccceEEEE-e----cCCEEEEE-eCCceEEEEecccccccccccccccCCC
Q 038537 1 MVFTGSSSTRIRVWRQPDCVERGFIKAR-HGEVRAIL-A----HDNMLFTT-NKDCKIRIWNFTVSDNFRTKKVTTLPRR 73 (358)
Q Consensus 1 ~l~tg~~dg~v~vw~~~~~~~~~~~~~h-~~~v~~i~-~----~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 73 (358)
+++.++.||.|.-.|..+|+.+..+... ..++.... . ++..++.. +.||.|..++..++..............
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 4789999999999999999998888764 12332221 1 22333333 5899999999887744332222111000
Q ss_pred ceeeeecCCCccccCCCceE-EEEEeCCCCEEEEEecCCeEEEEEccCCc
Q 038537 74 SSFLSFSKSNTQQQHRDCVS-CMAFYHAEGLLYTGSFDKTVKAWRVLDKR 122 (358)
Q Consensus 74 ~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 122 (358)
..+.....+|. ..--...+..+++|+.+|.+...|+.+++
T Consensus 92 ---------SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 92 ---------SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp ---------CSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred ---------cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 00001111111 00000145678999999999999999998
No 327
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.57 E-value=0.48 Score=44.00 Aligned_cols=239 Identities=12% Similarity=0.113 Sum_probs=119.5
Q ss_pred cceEEEEec-CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEe
Q 038537 30 GEVRAILAH-DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGS 108 (358)
Q Consensus 30 ~~v~~i~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~ 108 (358)
..|.++..+ .+.|..|+ ++-|..|+..+++..... .... .. ......|.++...+++. |..|+
T Consensus 373 ~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~-~~~~-----------~~--~~~~~~v~~i~~d~~g~-lWigT 436 (758)
T 3ott_A 373 NRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYN-IVDN-----------TG--TYNTNWTYYIFEDTAGQ-LWIST 436 (758)
T ss_dssp SCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEE-EECC-----------C----CBSSSEEEEEECTTSE-EEEEE
T ss_pred CceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEee-cCCC-----------cC--CCCCceEEEEEEcCCCC-EEEEE
Confidence 357888775 34566666 456888887765432110 0000 00 01234578887776665 56677
Q ss_pred cCCeEEEEEccCC------cccccccc---cc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeee-cc
Q 038537 109 FDKTVKAWRVLDK------RCTCVDSF---VA-HESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTL-KF 177 (358)
Q Consensus 109 ~dg~i~iwd~~~~------~~~~~~~~---~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~ 177 (358)
..+-+.++|..+. .......+ .+ ....|.++...+++.+.+.++..+-|..+|..++. +.... ..
T Consensus 437 ~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~----~~~~~~~~ 512 (758)
T 3ott_A 437 CLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTRE----VTKLFADE 512 (758)
T ss_dssp SSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTE----EEEECTTT
T ss_pred CCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCc----eEEecCCC
Confidence 6666888886531 10000010 11 12358999999888877644444558888874332 11111 00
Q ss_pred --cCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcC
Q 038537 178 --QQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRA 255 (358)
Q Consensus 178 --~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 255 (358)
....+.++.... ++.+ ..|+..| +..||..+..........+. ...+.++..+...|..++.+| |..+|..
T Consensus 513 ~~~~~~~~~i~~d~--~g~l-Wigt~~G-l~~~~~~~~~~~~~~~~gl~--~~~i~~i~~~~g~lWi~t~~G-l~~~~~~ 585 (758)
T 3ott_A 513 LTGEKSPNYLLCDE--DGLL-WVGFHGG-VMRINPKDESQQSISFGSFS--NNEILSMTCVKNSIWVSTTNG-LWIIDRK 585 (758)
T ss_dssp SCGGGCEEEEEECT--TSCE-EEEETTE-EEEECC--CCCCBCCCCC-----CCEEEEEEETTEEEEEESSC-EEEEETT
T ss_pred cCCCcccceEEECC--CCCE-EEEecCc-eEEEecCCCceEEecccCCC--ccceEEEEECCCCEEEECCCC-eEEEcCC
Confidence 123456666553 5554 4555554 88888765321111001111 123455555566777777777 7778888
Q ss_pred CCceeeeeeeeecCcccceEEEEee-cccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 256 EGGCYHECLAVLDGHRGPVRCLAAS-LEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 256 ~~~~~~~~~~~~~~h~~~v~~i~~~-~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
+.+. ..+.-....+....+. ++ | .|.-|+.+|.+ .++.+.
T Consensus 586 ~~~~-----~~~~~~~~~~~~~~~~~~~------G-~l~fG~~~Gl~-~f~p~~ 626 (758)
T 3ott_A 586 TMDA-----RQQNMTNKRFTSLLFDPKE------D-CVYLGGADGFG-ISHSNL 626 (758)
T ss_dssp TCCE-----EEC--CCCCCSEEEEETTT------T-EEEEECBSEEE-EEEC--
T ss_pred Ccee-----EEecCCCCceeeeEEECCC------C-cEEEecCCceE-EEChhh
Confidence 7632 1111112233334443 33 4 45566667754 455544
No 328
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.52 E-value=0.28 Score=41.39 Aligned_cols=149 Identities=9% Similarity=0.085 Sum_probs=83.5
Q ss_pred CCcEEEEeCCCceeeeeeeec----ccceEEE--EecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecC
Q 038537 8 STRIRVWRQPDCVERGFIKAR----HGEVRAI--LAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSK 81 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~~h----~~~v~~i--~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
++.||.-++.....-+.+... -..|..+ .++|++||..+ +..|.|-.+..+...........+.....+...+
T Consensus 40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 355665565533333333332 1135444 45678888776 4589998888432111100000000001111111
Q ss_pred CCccccCCCceEEEEEeCC---CCEEEEEecCCeEEEEEccCCccccccccc---------ccccCeEEEEEcCCCCEEE
Q 038537 82 SNTQQQHRDCVSCMAFYHA---EGLLYTGSFDKTVKAWRVLDKRCTCVDSFV---------AHESNVNAIVVNQDDGFVF 149 (358)
Q Consensus 82 ~~~~~~h~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~ 149 (358)
.......+|..+.|+|- +..|++-..|+.|++||+....-.+. .+. .....|.+++|.+++-.|.
T Consensus 119 --~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLY 195 (452)
T 3pbp_A 119 --EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLY 195 (452)
T ss_dssp --CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEE
T ss_pred --cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEE
Confidence 11224678999999994 46899999999999999986321122 221 1225788999999877666
Q ss_pred EEe--CCCcEEEE
Q 038537 150 TCS--SDGSVKIW 160 (358)
Q Consensus 150 ~~~--~dg~i~~w 160 (358)
..+ +.|.|+-.
T Consensus 196 vl~~t~~GDIYAl 208 (452)
T 3pbp_A 196 CLNTTEGGDIFAF 208 (452)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEecCCCCCEEEE
Confidence 655 77877655
No 329
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.38 E-value=0.53 Score=43.16 Aligned_cols=153 Identities=10% Similarity=0.132 Sum_probs=81.1
Q ss_pred CCCCEEEEEecC----CeEEEEEccCCcccccc-c-----ccccccCeEEEEEcCCCCEEEEEeCCC------cEEEEEc
Q 038537 99 HAEGLLYTGSFD----KTVKAWRVLDKRCTCVD-S-----FVAHESNVNAIVVNQDDGFVFTCSSDG------SVKIWRR 162 (358)
Q Consensus 99 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~~wd~ 162 (358)
.++..++.|+.+ ..+.+||..+.++..+. . .......-..+.+..++..++.|+.++ .+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 366777788754 46889999888765554 2 111111222333322677777777543 4778887
Q ss_pred eecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCC--cEEEEEccCCcCCccccce---ee-cccc-eeEEEee
Q 038537 163 VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG--SINFWEKDKMSGGFNHGGF---LQ-GHCF-AVLCLVA 235 (358)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~---~~-~~~~-~~~~~~~ 235 (358)
.+.. +.....+.... .-.+++... ++.+++.|+.++ .+.+||..+.. ...... .. .... ....+..
T Consensus 476 ~t~~--W~~~~~~p~~R-~~h~~~~~~--~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~ 548 (695)
T 2zwa_A 476 KTRE--WSMIKSLSHTR-FRHSACSLP--DGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDP 548 (695)
T ss_dssp TTTE--EEECCCCSBCC-BSCEEEECT--TSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEET
T ss_pred CCCc--EEECCCCCCCc-ccceEEEEc--CCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeC
Confidence 5432 22222111111 112222222 678888887755 68999988733 211111 11 1111 1122222
Q ss_pred e-CCEEEEeeC--C-----CeEEEEEcCCCc
Q 038537 236 I-EKLIFSGSE--D-----TTIRVWRRAEGG 258 (358)
Q Consensus 236 ~-~~~l~~~~~--d-----g~i~iwd~~~~~ 258 (358)
. +.+++.|+. + ..+.+||+.+..
T Consensus 549 ~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 549 VSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 2 567777775 2 458899998875
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.35 E-value=0.4 Score=40.62 Aligned_cols=232 Identities=10% Similarity=0.146 Sum_probs=127.0
Q ss_pred ecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEE
Q 038537 37 AHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAW 116 (358)
Q Consensus 37 ~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iw 116 (358)
+..+.+|.=. ..++.|+|+++...++.... ...|.-=.|-.+ +.|+..+ +..|.-|
T Consensus 75 P~~~iiALra-g~~lQiFnle~K~klks~~~---------------------~e~VvfWkWis~-~~l~lVT-~taVyHW 130 (494)
T 1bpo_A 75 PASKVIALKA-GKTLQIFNIEMKSKMKAHTM---------------------TDDVTFWKWISL-NTVALVT-DNAVYHW 130 (494)
T ss_dssp SSSSCEEEEE-TTEEEEEETTTTEEEEEEEC---------------------SSCCCEEEEEET-TEEEEEC-SSEEEEE
T ss_pred CCCcEEEEec-CCeEEEEchHHhhhhcceec---------------------CCCceEEEecCC-CeEEEEc-CCeeEEe
Confidence 3444454443 67999999998776643221 234555556533 3444444 3579999
Q ss_pred EccCCcccccccccccc----cCeEEEEEcCCCCEEEEEeC-------CCcEEEEEceecCCcceeeeeecccCCceeEE
Q 038537 117 RVLDKRCTCVDSFVAHE----SNVNAIVVNQDDGFVFTCSS-------DGSVKIWRRVYRENSHTLTMTLKFQQSSVNAL 185 (358)
Q Consensus 117 d~~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~-------dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~ 185 (358)
++.... .+...+..|. ..|..-..+++.+.++..+- .|.+.+|..+.+ ....+++|...-..+
T Consensus 131 si~~~s-~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-----~sQ~ieGhaa~F~~~ 204 (494)
T 1bpo_A 131 SMEGES-QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-----VSQPIEGHAASFAQF 204 (494)
T ss_dssp ESSSSC-CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-----CEEEECCSEEEEEEE
T ss_pred cccCCC-CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-----ccchheeeeeeeEEE
Confidence 997532 3555555443 45777777888887664432 366778875322 233445554444333
Q ss_pred EEeecCC-CcEEEEeec---CCcEEEEEccCCc-CCccccce-----eec---cccee-EEEeeeCCEEEEeeCCCeEEE
Q 038537 186 ALSSFFD-NYFLYSGSS---DGSINFWEKDKMS-GGFNHGGF-----LQG---HCFAV-LCLVAIEKLIFSGSEDTTIRV 251 (358)
Q Consensus 186 ~~~~~~~-~~~l~~~~~---dg~i~i~d~~~~~-~~~~~~~~-----~~~---~~~~~-~~~~~~~~~l~~~~~dg~i~i 251 (358)
.....+. ..+++.+.. .+.+++-++.... ........ +.. ...++ ..++..-..++.-+.-|.|++
T Consensus 205 ~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~l 284 (494)
T 1bpo_A 205 KMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHL 284 (494)
T ss_dssp ECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred ecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEE
Confidence 3321111 123333333 3789999986531 11111000 000 11111 333445578888889999999
Q ss_pred EEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 252 WRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 252 wd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
||+.++. ++..-+-...+|..-+-+.. ..=++.....|.|.--.++.
T Consensus 285 yDleTgt----~i~~nrIs~~~iF~t~~~~~------~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 285 YDLETGT----CIYMNRISGETIFVTAPHEA------TAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp EETTTCC----EEEEEECCSSCEEEEEEETT------TTEEEEEETTCEEEEEEECT
T ss_pred Eecccce----eeeeecccCCceEEecccCC------CCcEEEEccCceEEEEEEcc
Confidence 9999994 44444444556655555444 22344444777776666653
No 331
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.26 E-value=0.41 Score=39.80 Aligned_cols=106 Identities=11% Similarity=0.053 Sum_probs=60.4
Q ss_pred CceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccc---cccccCeEEEEEcCC---CCEEEEEeC----C----C
Q 038537 90 DCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF---VAHESNVNAIVVNQD---DGFVFTCSS----D----G 155 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~----d----g 155 (358)
.....++|.|+|+ |+.+..+|.|++++. +++ ..+..+ .........|+++|+ +..|.++.. + .
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECS-SCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 3468899999997 455566799999973 343 222221 122356889999997 455554443 2 5
Q ss_pred cEEEEEceecCC----cceeeeeec-ccCCceeEEEEeecCCCcEEEEee
Q 038537 156 SVKIWRRVYREN----SHTLTMTLK-FQQSSVNALALSSFFDNYFLYSGS 200 (358)
Q Consensus 156 ~i~~wd~~~~~~----~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~ 200 (358)
.|..|+...... ...+...+. ........++|.| ++.++++.+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p--DG~Lyvt~G 153 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP--DGMLYITTG 153 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT--TSCEEEECC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC--CCcEEEEEC
Confidence 666676543210 011111111 1112346789988 887777643
No 332
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.13 E-value=0.83 Score=44.99 Aligned_cols=225 Identities=9% Similarity=0.056 Sum_probs=114.0
Q ss_pred CCcEEEEeCCCceeeeeeeecccceEEEEe-cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccc
Q 038537 8 STRIRVWRQPDCVERGFIKARHGEVRAILA-HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQ 86 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (358)
..++.|+|+++...+..+.-. .+|.-..| +.+.|+-.+ +..|.-|++...... .+. +.....+.
T Consensus 85 g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P--~k~-----------fdR~~~L~ 149 (1630)
T 1xi4_A 85 GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQP--VKM-----------FDRHSSLA 149 (1630)
T ss_pred CCeEEEeehHHhhhhcccccC-CCceEEEecCCCeeEEEc-CCeEEEeccCCCCcc--HHH-----------Hhcchhcc
Confidence 456667776665554443332 23444444 455555544 447888888642211 000 11111122
Q ss_pred cCCCceEEEEEeCCCCEEEEEe-------cCCeEEEEEccCCcccccccccccccCeEEEEEcC--C-CCEEEEEeC---
Q 038537 87 QHRDCVSCMAFYHAEGLLYTGS-------FDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQ--D-DGFVFTCSS--- 153 (358)
Q Consensus 87 ~h~~~v~~~~~~~~~~~l~~~~-------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~l~~~~~--- 153 (358)
...|..-..+++.++++..+ -.|.+.+|.++.+. .+.+.+|.+....+.... . ...++.+..
T Consensus 150 --~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~---sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~ 224 (1630)
T 1xi4_A 150 --GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (1630)
T ss_pred --cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc---chhhhHhHhhhheeccCCCCCCceEEEEEEecCC
Confidence 34466666677777665432 34789999987664 445566655444444321 1 222322222
Q ss_pred CCcEEEEEceec-CCccee-------eeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeec
Q 038537 154 DGSVKIWRRVYR-ENSHTL-------TMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQG 225 (358)
Q Consensus 154 dg~i~~wd~~~~-~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 225 (358)
.+.+++-++... .....+ .........-..++..++ ....+..-+.-|.|++||+.++...+. ..+..
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~--k~g~iy~itk~G~~~~~d~~t~~~i~~--~ris~ 300 (1630)
T 1xi4_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE--KHDVVFLITKYGYIHLYDLETGTCIYM--NRISG 300 (1630)
T ss_pred CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc--ccCEEEEEecCceEEEEecccchhhhh--ccccC
Confidence 268899888543 111111 111111233345566666 677788888999999999999554332 22333
Q ss_pred ccceeEEEeeeCCEEEEeeCCCeEEEEEcCC
Q 038537 226 HCFAVLCLVAIEKLIFSGSEDTTIRVWRRAE 256 (358)
Q Consensus 226 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 256 (358)
.+.-+.+-.....-++.....|.|.--.+..
T Consensus 301 ~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~ 331 (1630)
T 1xi4_A 301 ETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (1630)
T ss_pred CceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence 3322333222222333333555555544444
No 333
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.07 E-value=0.5 Score=39.18 Aligned_cols=105 Identities=13% Similarity=0.222 Sum_probs=60.7
Q ss_pred ceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccc---cccccCeEEEEEcCC---CCEEEEEeC-C-----CcEE
Q 038537 91 CVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF---VAHESNVNAIVVNQD---DGFVFTCSS-D-----GSVK 158 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~-d-----g~i~ 158 (358)
....++|.|+|+++ .+..+|.|.+++ +++...+..+ .........|+++|+ +..|.++.. . +.|.
T Consensus 32 ~P~~ia~~pdG~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGML-IAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEE-EEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEE-EEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 46789999999854 456679999998 3432222211 122456889999998 555554443 2 5677
Q ss_pred EEEceecCC--cceeeeeec---ccCCceeEEEEeecCCCcEEEEee
Q 038537 159 IWRRVYREN--SHTLTMTLK---FQQSSVNALALSSFFDNYFLYSGS 200 (358)
Q Consensus 159 ~wd~~~~~~--~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~~ 200 (358)
.++...... ...+...+. ........++|.| ++.++++.+
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~G 153 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP--DGMLYVTTG 153 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT--TSCEEEECC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC--CCCEEEEEC
Confidence 777653211 111111121 1122346899998 887666643
No 334
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.04 E-value=1.3 Score=43.69 Aligned_cols=192 Identities=11% Similarity=0.227 Sum_probs=104.3
Q ss_pred cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEE
Q 038537 38 HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWR 117 (358)
Q Consensus 38 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 117 (358)
..+.++.= ...++.|+|+++...+.... ...+|.-=.|-.+. .|+..+ +..|.-|+
T Consensus 76 ~~~iiALr-ag~~lQiFnl~~k~klks~~---------------------~~e~VvfWkWis~~-~l~lVT-~~aVyHW~ 131 (1630)
T 1xi4_A 76 ASKVIALK-AGKTLQIFNIEMKSKMKAHT---------------------MTDDVTFWKWISLN-TVALVT-DNAVYHWS 131 (1630)
T ss_pred CcceEEEe-cCCeEEEeehHHhhhhcccc---------------------cCCCceEEEecCCC-eeEEEc-CCeEEEec
Confidence 34444433 36789999999876654322 12345555565333 344333 35699999
Q ss_pred ccCCccccccccccc----ccCeEEEEEcCCCCEEEEEe-------CCCcEEEEEceecCCcceeeeeecccCCceeEEE
Q 038537 118 VLDKRCTCVDSFVAH----ESNVNAIVVNQDDGFVFTCS-------SDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALA 186 (358)
Q Consensus 118 ~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~ 186 (358)
+.... .+...+..| ...|..-..+++.++++..+ -.|.+.+|....+. ...+.+|...-..+.
T Consensus 132 ~~~~s-~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-----sQ~iegha~~F~~~~ 205 (1630)
T 1xi4_A 132 MEGES-QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-----SQPIEGHAASFAQFK 205 (1630)
T ss_pred cCCCC-ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-----chhhhHhHhhhheec
Confidence 96532 356666555 44666777788888766443 24778888764332 233344444333333
Q ss_pred EeecCC-CcEEEEeec---CCcEEEEEccCC-c--CCcccc--c-eeec---cccee-EEEeeeCCEEEEeeCCCeEEEE
Q 038537 187 LSSFFD-NYFLYSGSS---DGSINFWEKDKM-S--GGFNHG--G-FLQG---HCFAV-LCLVAIEKLIFSGSEDTTIRVW 252 (358)
Q Consensus 187 ~~~~~~-~~~l~~~~~---dg~i~i~d~~~~-~--~~~~~~--~-~~~~---~~~~~-~~~~~~~~~l~~~~~dg~i~iw 252 (358)
....+. ...++.+.. .+.++|-++... . +.+... . .+.. ...++ ..+++.-..+..-+.-|.|.+|
T Consensus 206 ~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~ 285 (1630)
T 1xi4_A 206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLY 285 (1630)
T ss_pred cCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEE
Confidence 321111 122222221 268999998653 1 111110 0 0110 11111 3334455778888899999999
Q ss_pred EcCCCce
Q 038537 253 RRAEGGC 259 (358)
Q Consensus 253 d~~~~~~ 259 (358)
|+.++..
T Consensus 286 d~~t~~~ 292 (1630)
T 1xi4_A 286 DLETGTC 292 (1630)
T ss_pred ecccchh
Confidence 9999843
No 335
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.80 E-value=0.56 Score=37.49 Aligned_cols=223 Identities=16% Similarity=0.102 Sum_probs=121.0
Q ss_pred cceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec
Q 038537 30 GEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF 109 (358)
Q Consensus 30 ~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 109 (358)
..|..++....+.+.-. ||.|..|-......+... ......|..++..... .++. .
T Consensus 24 ~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p--------------------~~~~~~i~~ia~G~~h-s~~l-~- 79 (282)
T 3qhy_B 24 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP--------------------AATQSGVDAIAAGNYH-SLAL-K- 79 (282)
T ss_dssp SSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC--------------------GGGGSCCCEEEECSSE-EEEE-E-
T ss_pred CCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC--------------------ccCCCCEEEEEeCCCE-EEEE-E-
Confidence 36778887666655556 999999987654332210 0112346667665333 2333 4
Q ss_pred CCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeecccCCceeEEEEee
Q 038537 110 DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKFQQSSVNALALSS 189 (358)
Q Consensus 110 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 189 (358)
||.|..|-....- .+-....-...|..++.... ..++-. ||.|+.|-.......... ......|..++..
T Consensus 80 ~G~v~~wG~n~~G--qlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~----~~~~~~i~~i~~G- 149 (282)
T 3qhy_B 80 DGEVIAWGGNEDG--QTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVP----AEAQSGVTALDGG- 149 (282)
T ss_dssp TTEEEEEECCTTS--TTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCC----GGGGSSEEEEEEC-
T ss_pred CCEEEEeeCCCCC--CCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCC----ccCCCCeEEEEcc-
Confidence 8999999765422 11111112356888877643 344445 999999976433222111 1123456666554
Q ss_pred cCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecC
Q 038537 190 FFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDG 269 (358)
Q Consensus 190 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 269 (358)
....+.-. ||.++.|-.......... ......+..++......+.- .||.|+.|=...... +.....
T Consensus 150 ---~~~~~~l~-~G~v~~wG~n~~gqlg~p----~~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gq----lg~p~~ 216 (282)
T 3qhy_B 150 ---VYTALAVK-NGGVIAWGDNYFGQTTVP----AEAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQ----TTVPTE 216 (282)
T ss_dssp ---SSEEEEEE-TTEEEEEECCTTSTTSCC----GGGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTST----TCCCGG
T ss_pred ---cCEEEEEE-CCEEEEecCCCCCCCCCc----eecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCC----CCCCcc
Confidence 22333333 799999976542221111 11123566666655554444 699999997654321 111111
Q ss_pred cccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 270 HRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 270 h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
....|..|+.... ..++++ ||.|..|=-..
T Consensus 217 ~~~~v~~i~~G~~------h~~al~---~g~v~~wG~n~ 246 (282)
T 3qhy_B 217 ALSGVSAIASGEW------YSLALK---NGKVIAWGSSR 246 (282)
T ss_dssp GGSSCCEEEECSS------CEEEEE---TTEEEEESTTC
T ss_pred cCCCceEEEcCCC------EEEEEE---CCEEEEecCCC
Confidence 2245777776654 233333 89999996553
No 336
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.54 E-value=0.89 Score=39.21 Aligned_cols=110 Identities=7% Similarity=0.095 Sum_probs=61.4
Q ss_pred CceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccc------cccCeEEEEEcCC---CCEEEEEeC-------
Q 038537 90 DCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA------HESNVNAIVVNQD---DGFVFTCSS------- 153 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~------- 153 (358)
...+.|+|.|+|+++++-...+.|++++..+++...+..+.. .......|+|+|+ +..|.++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 346799999999876664433478888765554322222211 2456789999995 555554442
Q ss_pred ------CCcEEEEEceecCC----cceeeeeec-ccCCceeEEEEeecCCCcEEEEeec
Q 038537 154 ------DGSVKIWRRVYREN----SHTLTMTLK-FQQSSVNALALSSFFDNYFLYSGSS 201 (358)
Q Consensus 154 ------dg~i~~wd~~~~~~----~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~ 201 (358)
...|.-++...... ...+...+. ........++|.| ++.++++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p--DG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP--DQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT--TSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC--CCeEEEEECC
Confidence 12455555432211 111111111 1123468899988 8887776543
No 337
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.38 E-value=1.7 Score=40.29 Aligned_cols=222 Identities=12% Similarity=0.144 Sum_probs=112.3
Q ss_pred EEeeeCCCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecC
Q 038537 2 VFTGSSSTRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSK 81 (358)
Q Consensus 2 l~tg~~dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (358)
|..|+.+| +..||..+.+...........|.++..+++.|..++.+ -|..++..+.+.........
T Consensus 76 lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~------------ 141 (758)
T 3ott_A 76 LYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLTSFDTRRN------------ 141 (758)
T ss_dssp EEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEEEECHHHH------------
T ss_pred EEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEEEeccCCC------------
Confidence 34555555 67888776544321111223466665555667777766 57777876543211100000
Q ss_pred CCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccc---cccCeEEEEEcCCCCEEEEEeCCCcEE
Q 038537 82 SNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA---HESNVNAIVVNQDDGFVFTCSSDGSVK 158 (358)
Q Consensus 82 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~ 158 (358)
.-....|.++...+++.+.+ |+.+| +..++..+++......... ....|.++...+++..|..|+. +-+.
T Consensus 142 ----~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~ 214 (758)
T 3ott_A 142 ----GLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLF 214 (758)
T ss_dssp ----CCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEE
T ss_pred ----CcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCe
Confidence 01124588888877776444 55554 7778876655221111000 1234888888877776555664 4577
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccc---eeecccceeEEEee
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGG---FLQGHCFAVLCLVA 235 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~ 235 (358)
.+|..++. +..........|.++.... ++. |..|+.+ -+.+++..+......... ...-....|.++..
T Consensus 215 ~~~~~~~~----~~~~~~l~~~~i~~i~~d~--~g~-lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 286 (758)
T 3ott_A 215 QYFPSTGQ----IKQTEAFHNNSIKSLALDG--NGD-LLAGTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFA 286 (758)
T ss_dssp EEETTTTE----EEEEEEEEEEEEEEEEECT--TCC-EEEEETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEE
T ss_pred EEcCCCCe----EEeccCCCCCeEEEEEEcC--CCC-EEEEeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEE
Confidence 78864332 1111111234577776654 454 4555544 477888665221000000 00011234666665
Q ss_pred e-CCEEEEeeCCCeEEEEE
Q 038537 236 I-EKLIFSGSEDTTIRVWR 253 (358)
Q Consensus 236 ~-~~~l~~~~~dg~i~iwd 253 (358)
+ ...|..|+..| +.++.
T Consensus 287 D~~g~lWiGT~~G-l~~~~ 304 (758)
T 3ott_A 287 DQEHNIWLGTDYG-ISLSR 304 (758)
T ss_dssp CTTCCEEEEESSS-EEEEC
T ss_pred cCCCCEEEEeCCc-ccccc
Confidence 5 34566666667 55443
No 338
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=94.97 E-value=1.3 Score=36.66 Aligned_cols=104 Identities=16% Similarity=0.154 Sum_probs=55.5
Q ss_pred ceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC---CCEEE
Q 038537 31 EVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA---EGLLY 105 (358)
Q Consensus 31 ~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~ 105 (358)
.-..+.+ ++. ++.+..+|.|.+++ . +... . ....+ ...........|+++|+ +..|+
T Consensus 32 ~P~~ia~~pdG~-l~V~e~~g~I~~i~-~-g~~~-~--~~~~~------------v~~~g~~~p~gia~~pdf~~~g~lY 93 (352)
T 2ism_A 32 VPWALAFLPDGG-MLIAERPGRIRLFR-E-GRLS-T--YAELS------------VYHRGESGLLGLALHPRFPQEPYVY 93 (352)
T ss_dssp CEEEEEECTTSC-EEEEETTTEEEEEE-T-TEEE-E--EEECC------------CCCSTTCSEEEEEECTTTTTSCEEE
T ss_pred CceEEEEcCCCe-EEEEeCCCeEEEEE-C-CCcc-E--eecce------------EeecCCCCceeEEECCCCCCCCEEE
Confidence 3446655 455 55556679999988 2 2211 0 00000 01122445789999998 55555
Q ss_pred EEec-C-----CeEEEEEccCCcc---ccc-cccc---ccccCeEEEEEcCCCCEEEEEe
Q 038537 106 TGSF-D-----KTVKAWRVLDKRC---TCV-DSFV---AHESNVNAIVVNQDDGFVFTCS 152 (358)
Q Consensus 106 ~~~~-d-----g~i~iwd~~~~~~---~~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~ 152 (358)
.+.. . +.|..++...... +.+ ..+. ........++|.|++.+.++.+
T Consensus 94 v~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 94 AYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 4433 2 6788888764321 111 1122 1111236899999997666643
No 339
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.59 E-value=1.7 Score=36.08 Aligned_cols=56 Identities=11% Similarity=0.054 Sum_probs=33.9
Q ss_pred eeCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEcc
Q 038537 235 AIEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSS 296 (358)
Q Consensus 235 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~ 296 (358)
+++.++++.-..+.|...++.......+....+.+-...+..+++.|+ |.++++..
T Consensus 275 ~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pD------G~lyv~~~ 330 (354)
T 3a9g_A 275 LRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDD------GGILISTS 330 (354)
T ss_dssp GTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTT------SCEEEEEC
T ss_pred cCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCC------CcEEEEEe
Confidence 356666666677788888887532111111222233457899999999 76666653
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.56 E-value=1.1 Score=34.05 Aligned_cols=189 Identities=10% Similarity=-0.013 Sum_probs=91.0
Q ss_pred CCCEEEEEecCCeEEEEEccCCcccc---ccccccc--ccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCccee--e
Q 038537 100 AEGLLYTGSFDKTVKAWRVLDKRCTC---VDSFVAH--ESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTL--T 172 (358)
Q Consensus 100 ~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~ 172 (358)
.+.+|+....| +++.=.+....... .....+. =..+..++|+|++.+.++ .+|.++-.+..+.....-. .
T Consensus 3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~ 79 (236)
T 1tl2_A 3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA 79 (236)
T ss_dssp CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence 34566667777 66555544433100 1111122 136779999998886666 6777665554322110000 0
Q ss_pred eee-cccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcc-ccceeec----ccceeEEEeeeCCEEEEeeCC
Q 038537 173 MTL-KFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFN-HGGFLQG----HCFAVLCLVAIEKLIFSGSED 246 (358)
Q Consensus 173 ~~~-~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~l~~~~~d 246 (358)
..+ ...-..-.++.|.| ++.+.++ .||.|+-++-.+.....- ......+ .....+.+.|+|.+.++. |
T Consensus 80 t~IG~~Gw~~F~a~~fD~--~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--d 153 (236)
T 1tl2_A 80 KKIGNGGWNQFQFLFFDP--NGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--G 153 (236)
T ss_dssp EEEECSCGGGCSEEEECT--TSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--T
T ss_pred cEecccccccceEEEECC--CCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--C
Confidence 000 00001136788887 8887777 669888776433111110 1111111 123445666777766666 7
Q ss_pred CeEEEEEcCCCce-ee-eeeeee-cCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEee
Q 038537 247 TTIRVWRRAEGGC-YH-ECLAVL-DGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVK 307 (358)
Q Consensus 247 g~i~iwd~~~~~~-~~-~~~~~~-~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~ 307 (358)
+.++-....+... .+ .....+ ......-+-+.|.++ +.+.+.. +| ++|...
T Consensus 154 g~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~------G~l~~v~--~g--~~Y~~~ 207 (236)
T 1tl2_A 154 QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV------GTLFGVQ--GG--KFYEDY 207 (236)
T ss_dssp TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT------SCEEEEE--TT--EEEEES
T ss_pred CcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC------CcEEEEe--CC--eEEecC
Confidence 7754433222110 00 001111 123334455778888 6555555 66 566654
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.48 E-value=1.4 Score=37.92 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=57.4
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcceeeeeec------ccCCceeEEEEeecCC-CcEEEEeec-----
Q 038537 134 SNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSHTLTMTLK------FQQSSVNALALSSFFD-NYFLYSGSS----- 201 (358)
Q Consensus 134 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~-~~~l~~~~~----- 201 (358)
.....|+|.|+++++++-...+.|++++...+.. ..+ ..+. .....+..++++|... +..|..+..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~-~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTV-FQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE-EECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEE-ecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3567999999999776654334688876533221 111 1111 1245667899997210 445544432
Q ss_pred --------CCcEEEEEccCCcCC----ccccc---eeecccceeEEEeeeCCEEEEee
Q 038537 202 --------DGSINFWEKDKMSGG----FNHGG---FLQGHCFAVLCLVAIEKLIFSGS 244 (358)
Q Consensus 202 --------dg~i~i~d~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~l~~~~ 244 (358)
...|.-|++...... ..+.. ....|...-+.+.+++.+.++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 134555554321110 01111 01236566678888888777644
No 342
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=94.39 E-value=2 Score=36.15 Aligned_cols=210 Identities=11% Similarity=0.059 Sum_probs=105.7
Q ss_pred EEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCe
Q 038537 33 RAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKT 112 (358)
Q Consensus 33 ~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~ 112 (358)
.+++....+.+.-..||.|..|-......+-....... ... .....+ ....|..++.. ....+.-..+|.
T Consensus 110 v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~---~~p---~~v~~l--~~~~i~~va~G--~~hs~alt~~G~ 179 (389)
T 3kci_A 110 VAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPC---DRP---RVIESL--RGIEVVDVAAG--GAHSACVTAAGD 179 (389)
T ss_dssp EEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCE---EEE---EECGGG--TTSCEEEEEEC--SSEEEEEETTSC
T ss_pred EEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccC---cCC---eEeccc--CCCeEEEEEeC--cCeEEEEeCCCe
Confidence 34455567777778899999997654322211000000 000 000001 12246666553 344555667888
Q ss_pred EEEEEccCC-c---------ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCc-------ceeeeee
Q 038537 113 VKAWRVLDK-R---------CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENS-------HTLTMTL 175 (358)
Q Consensus 113 i~iwd~~~~-~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-------~~~~~~~ 175 (358)
|..|-.... + ..+..........|..++........++...||.|..|-....... .......
T Consensus 180 v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v 259 (389)
T 3kci_A 180 LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKI 259 (389)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEEC
T ss_pred EEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEe
Confidence 999864321 1 0011111112345777776543456677788999999964322111 0111111
Q ss_pred c-ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCc----c---ccceee-cccceeEEEeeeCCEEEEeeCC
Q 038537 176 K-FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGF----N---HGGFLQ-GHCFAVLCLVAIEKLIFSGSED 246 (358)
Q Consensus 176 ~-~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~---~~~~~~-~~~~~~~~~~~~~~~l~~~~~d 246 (358)
. .....|..++.. ..+.++-..+|.|+.|=........ . ....+. .....+..++......++-..|
T Consensus 260 ~~~~~~~v~~v~~G----~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~~~ 335 (389)
T 3kci_A 260 DSLTGLGVVKVECG----SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTED 335 (389)
T ss_dssp GGGTTSCEEEEEEE----TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEEEETT
T ss_pred cccCCCcEEEEeCC----CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEeccCeEEEECCC
Confidence 1 112245555543 3455555789999999654311100 0 000011 1113456666666666777889
Q ss_pred CeEEEEEcCC
Q 038537 247 TTIRVWRRAE 256 (358)
Q Consensus 247 g~i~iwd~~~ 256 (358)
|.|+.|=...
T Consensus 336 G~v~~wG~n~ 345 (389)
T 3kci_A 336 GEVYTWGDND 345 (389)
T ss_dssp CCEEEEECCT
T ss_pred CCEEEeeCCC
Confidence 9999997654
No 343
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=94.16 E-value=2.2 Score=35.83 Aligned_cols=286 Identities=10% Similarity=0.051 Sum_probs=139.0
Q ss_pred EeeeCCCcEEEEeCCC-ce-------eeeeee----ecccceEEEEecCCEEEEEeCCceEEEEeccccccccccccccc
Q 038537 3 FTGSSSTRIRVWRQPD-CV-------ERGFIK----ARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 3 ~tg~~dg~v~vw~~~~-~~-------~~~~~~----~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 70 (358)
+.-..||+|..|=... ++ ...... .....+..++......+.-..||.|..|-....-.+-.....
T Consensus 14 ~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~-- 91 (389)
T 3kci_A 14 LYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTE-- 91 (389)
T ss_dssp -------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSC--
T ss_pred eeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcC--
Confidence 4456789999995332 11 111110 011245667766777777788999999976543222110000
Q ss_pred CCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCC-cc--------cccccccc-cccCeEEEE
Q 038537 71 PRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDK-RC--------TCVDSFVA-HESNVNAIV 140 (358)
Q Consensus 71 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~--------~~~~~~~~-~~~~v~~~~ 140 (358)
..... .... .-....+..++++.-....+.-..||.|..|-.... ++ .....+.. ....|..++
T Consensus 92 -~~~~p---~~v~--~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va 165 (389)
T 3kci_A 92 -SVSTP---TLLE--SIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA 165 (389)
T ss_dssp -CEEEE---EECG--GGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred -CccCC---EEcc--cccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEE
Confidence 00000 0000 011223455566555566666678899999954321 00 00011111 123566666
Q ss_pred EcCCCCEEEEEeCCCcEEEEEceecCCc--------ceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 141 VNQDDGFVFTCSSDGSVKIWRRVYRENS--------HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 141 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~--------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
.. ....++...+|.|+.|-....... ..+..........|..++... ...+.++-..||.|+.|-...
T Consensus 166 ~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~--g~~~t~~l~~~G~v~~wG~n~ 241 (389)
T 3kci_A 166 AG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS--GDAQTLCLTDDDTVWSWGDGD 241 (389)
T ss_dssp EC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC--SSCEEEEEETTTEEEEEECCG
T ss_pred eC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC--CCcEEEEEccCCEEEEEeCCC
Confidence 64 455666678999999965321110 111111111223455555432 235666677899999996543
Q ss_pred CcCCc-------cccceee-cccceeEEEeeeCCEEEEeeCCCeEEEEEcCCC--------ceeeeeeeeecCcccceEE
Q 038537 213 MSGGF-------NHGGFLQ-GHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEG--------GCYHECLAVLDGHRGPVRC 276 (358)
Q Consensus 213 ~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~h~~~v~~ 276 (358)
..... .....+. .....+..++......++-..||.|+.|=.... .....+..........|..
T Consensus 242 ~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ 321 (389)
T 3kci_A 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIA 321 (389)
T ss_dssp GGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEE
T ss_pred CCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEE
Confidence 11100 0000011 111235666666666677778999999965421 0111122111112245777
Q ss_pred EEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 277 LAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 277 i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
|+.-.. ..+....||.|..|=...
T Consensus 322 ia~G~~--------h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 322 IATGSL--------HCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp EEECSS--------EEEEEETTCCEEEEECCT
T ss_pred EEeccC--------eEEEECCCCCEEEeeCCC
Confidence 766544 445557899999998754
No 344
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.87 E-value=3 Score=33.26 Aligned_cols=207 Identities=17% Similarity=0.154 Sum_probs=110.9
Q ss_pred CCcEEEEeCCCceeeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCcccc
Q 038537 8 STRIRVWRQPDCVERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQ 87 (358)
Q Consensus 8 dg~v~vw~~~~~~~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (358)
||.|..|-....-.+..-......|..++....+.+.-. ||.|..|-......+.. | ..
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~------P--------------~~ 99 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV------P--------------AE 99 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC------C--------------GG
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC------C--------------cc
Confidence 899999975432222111122346778877665554445 99999998765433211 1 01
Q ss_pred CCCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCC
Q 038537 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYREN 167 (358)
Q Consensus 88 h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 167 (358)
-...|..++...... +.-. ||.|..|-..... .+.........|..++..... .+.-. ||.|..|-......
T Consensus 100 ~~~~v~~ia~G~~hs--~al~-~G~v~~wG~n~~g--qlg~~~~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 100 ARSGVDAIAAGAWAS--YALK-DGKVIAWGDDSDG--QTTVPAEAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp GSSSEEEEEEETTEE--EEEE-TTEEEEEECCTTS--TTSCCGGGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTST
T ss_pred cCCCeEEEECcCCEE--EEEe-CCeEEEecCCCCC--cCCCCccCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCC
Confidence 123577777754433 3334 8999999765422 111111224568777765433 33334 79999997643322
Q ss_pred cceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEeeCCC
Q 038537 168 SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGSEDT 247 (358)
Q Consensus 168 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 247 (358)
...+ ......|..++.. ....++. .||.++.|=........... .....+..++......+.-. ||
T Consensus 172 lg~p----~~~~~~v~~i~~G---~~hs~al--~~G~v~~wG~n~~gqlg~p~----~~~~~v~~i~~G~~h~~al~-~g 237 (282)
T 3qhy_B 172 TTVP----AEAQSGVDDVAGG---IFHSLAL--KDGKVIAWGDNRYKQTTVPT----EALSGVSAIASGEWYSLALK-NG 237 (282)
T ss_dssp TSCC----GGGGSSEEEEEEC---SSEEEEE--ETTEEEEEECCTTSTTCCCG----GGGSSCCEEEECSSCEEEEE-TT
T ss_pred CCCc----eecCCCeEEEEec---CCEEEEE--ECCeEEEEECCCCCCCCCCc----ccCCCceEEEcCCCEEEEEE-CC
Confidence 2211 1113456666654 2333444 69999999765422211111 11123555555444444444 99
Q ss_pred eEEEEEcCCC
Q 038537 248 TIRVWRRAEG 257 (358)
Q Consensus 248 ~i~iwd~~~~ 257 (358)
.|+.|=....
T Consensus 238 ~v~~wG~n~~ 247 (282)
T 3qhy_B 238 KVIAWGSSRT 247 (282)
T ss_dssp EEEEESTTCC
T ss_pred EEEEecCCCC
Confidence 9999966543
No 345
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=91.88 E-value=5 Score=33.63 Aligned_cols=115 Identities=16% Similarity=0.097 Sum_probs=57.4
Q ss_pred CceEEEEEeCC--CCEEEEEecCCeEEEEEccCCccccccccc----------------ccccCeEEEEEcCC-CCEEEE
Q 038537 90 DCVSCMAFYHA--EGLLYTGSFDKTVKAWRVLDKRCTCVDSFV----------------AHESNVNAIVVNQD-DGFVFT 150 (358)
Q Consensus 90 ~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~-~~~l~~ 150 (358)
..|.++++.|. ...|..++..+.|...+-....+..+.... .....+.+|.++|. ...+..
T Consensus 115 ~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 115 DHVFWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp CEEEEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred cceeEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 35888999872 456676666665555433223333332211 11235789999883 444555
Q ss_pred EeCCCcEEEEEceecCCcceeeee-ecc---------cCCceeEEEEeecCCCcEEEEeecCCcEEEE
Q 038537 151 CSSDGSVKIWRRVYRENSHTLTMT-LKF---------QQSSVNALALSSFFDNYFLYSGSSDGSINFW 208 (358)
Q Consensus 151 ~~~dg~i~~wd~~~~~~~~~~~~~-~~~---------~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~ 208 (358)
+..++.|.. ...+....+.... ... ....+.++.+.| .+...++++...+ |...
T Consensus 195 g~~~ggl~~--s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~-~~~~~l~vg~~~g-l~~s 258 (394)
T 3b7f_A 195 GMSSGGVFE--STDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHP-AAPDILYQQNHCG-IYRM 258 (394)
T ss_dssp EEETBEEEE--ESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECS-SSTTEEEEEETTE-EEEE
T ss_pred EECCCCEEE--ECCCCCCceECCCCccccccCCCccccCcceeEEEECC-CCCCEEEEEcCCe-EEEe
Confidence 554444333 2222222222111 000 013478888887 2345666666544 4443
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=91.11 E-value=5.1 Score=32.25 Aligned_cols=141 Identities=9% Similarity=0.118 Sum_probs=74.4
Q ss_pred EEEeCCCCEEEEEecC--------------CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEe--CCCcEE
Q 038537 95 MAFYHAEGLLYTGSFD--------------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCS--SDGSVK 158 (358)
Q Consensus 95 ~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~ 158 (358)
--+++++..|+-+... ..|+..++...+...+.. ... ..++++++.|+-.. .++.-.
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-----~~~--~~~s~~g~~Iy~~~~~~~~~~~ 130 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-----DPC--IYASLIGNYIYYLHYDTQTATS 130 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-----SCE--EEEEEETTEEEEEEESSSSCEE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-----CCc--cEEEEeCCEEEEEeecCCCCce
Confidence 3456788888776543 467777777665222221 222 25677888888776 455555
Q ss_pred EEEceecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeec-CCcEEEEEccCCcCCccccceeecccceeEEEeeeC
Q 038537 159 IWRRVYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS-DGSINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIE 237 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (358)
||.+.......+... .+ .+ .+++| +++.|+-.+. ...|...++...... . ...+ ... ..+.|++
T Consensus 131 Iy~~~~dGs~~~~lt---~~--~~--~~~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~-~---l~~~-~~~-~~~~P~g 195 (302)
T 3s25_A 131 LYRIRIDGEEKKKIK---NH--YL--FTCNT--SDRYFYYNNPKNGQLYRYDTASQSEA-L---FYDC-NCY-KPVVLDD 195 (302)
T ss_dssp EEEEETTSCCCEEEE---SS--CC--CCSEE--ETTEEEEECTTTCCEEEEETTTTEEE-E---EECS-CEE-EEEEEET
T ss_pred EEEEECCCCCeEEEe---CC--Cc--eEeeE--ECCEEEEEeCCCceEEEEECCCCCEE-E---EeCC-Ccc-ceeeecC
Confidence 555543322222221 11 12 33455 5666664444 567777776652211 1 1112 111 2356888
Q ss_pred CEEEEeeCC--CeEEEEEcCCC
Q 038537 238 KLIFSGSED--TTIRVWRRAEG 257 (358)
Q Consensus 238 ~~l~~~~~d--g~i~iwd~~~~ 257 (358)
.+|+-...+ ..|..-++...
T Consensus 196 ~~iy~t~~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 196 TNVYYMDVNRDNAIVHVNINNP 217 (302)
T ss_dssp TEEEEEEGGGTTEEEEECSSSC
T ss_pred CEEEEEEcCCCcEEEEEECCCC
Confidence 887765533 35666666655
No 347
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.68 E-value=6.2 Score=32.49 Aligned_cols=248 Identities=10% Similarity=0.055 Sum_probs=115.0
Q ss_pred cceEEEEe--cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCC---CCEE
Q 038537 30 GEVRAILA--HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHA---EGLL 104 (358)
Q Consensus 30 ~~v~~i~~--~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l 104 (358)
..-..|++ ++.++++--..|.|++++...+..... ...+ ............|+++|+ +..|
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v---~~~~-----------~v~~~g~~GllGia~~Pdf~~~g~l 97 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTEL---GEVP-----------GVSPSGEGGLLGIALSPDYASDHMV 97 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE---EECT-----------TCCCBTTBSEEEEEECTTHHHHCEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeee---cccC-----------ceeecCCCCceeeEeccccccCCEE
Confidence 34456655 566665555489999987654432110 0000 011234556899999995 3444
Q ss_pred EEE---ecCCeEEEEEccCC-----cc---ccc-cccc-ccccCeEEEEEcCCCCEEEEEeC-------------CCcEE
Q 038537 105 YTG---SFDKTVKAWRVLDK-----RC---TCV-DSFV-AHESNVNAIVVNQDDGFVFTCSS-------------DGSVK 158 (358)
Q Consensus 105 ~~~---~~dg~i~iwd~~~~-----~~---~~~-~~~~-~~~~~v~~~~~~~~~~~l~~~~~-------------dg~i~ 158 (358)
+.. ..++.|.-|.+... .. +.+ ..+. ........|.|.|++.+.++.+. .|.|.
T Consensus 98 Yv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~Il 177 (347)
T 3das_A 98 YAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKIL 177 (347)
T ss_dssp EEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEE
T ss_pred EEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEE
Confidence 432 23456666666542 11 011 1111 11123456999999987776543 24444
Q ss_pred EEEceecCCcc-ee--eeeecccCCceeEEEEeecCCCcEEEEee-cCCcEEEEEccCCcCC-cc-------------cc
Q 038537 159 IWRRVYRENSH-TL--TMTLKFQQSSVNALALSSFFDNYFLYSGS-SDGSINFWEKDKMSGG-FN-------------HG 220 (358)
Q Consensus 159 ~wd~~~~~~~~-~~--~~~~~~~~~~i~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~-~~-------------~~ 220 (358)
-.+....-... .+ ...+...-.....++|+| ++.++++=. .|+.=.|--+..+..- +. ..
T Consensus 178 Ri~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp--~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~ 255 (347)
T 3das_A 178 RMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDD--KQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPV 255 (347)
T ss_dssp EECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECT--TCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCS
T ss_pred EEeCCCCccCCCCCCCCeEEeeCCCCcceEEECC--CCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCc
Confidence 33332110000 00 001111123456788887 666554432 2222222222221110 00 00
Q ss_pred ceeecccceeEEEee-eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEc-cCC
Q 038537 221 GFLQGHCFAVLCLVA-IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSS-SLD 298 (358)
Q Consensus 221 ~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~-~~d 298 (358)
.....+......+.+ .+.++...-..+.|....+.......+....+.+..+.+.+|+..|+ |.++++. ..|
T Consensus 256 ~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pD------G~lyv~td~~~ 329 (347)
T 3das_A 256 AQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGG------DKLWLVTSNTD 329 (347)
T ss_dssp EEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEET------TEEEEEECTTS
T ss_pred EecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCC------CcEEEEEcCCC
Confidence 001111112233333 34455555455667666665542211223334455578999999999 6665554 344
Q ss_pred C
Q 038537 299 Q 299 (358)
Q Consensus 299 g 299 (358)
|
T Consensus 330 g 330 (347)
T 3das_A 330 G 330 (347)
T ss_dssp S
T ss_pred C
Confidence 4
No 348
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=89.87 E-value=8.4 Score=32.70 Aligned_cols=254 Identities=11% Similarity=0.004 Sum_probs=129.3
Q ss_pred cceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEec
Q 038537 30 GEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSF 109 (358)
Q Consensus 30 ~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 109 (358)
..|..++....+.+.-..||.|..|-....-.+-.......... ... . ......|..|+.. ....+.-..
T Consensus 75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~-~P~------~-v~~~~~i~~va~G--~~hs~al~~ 144 (423)
T 3mvd_K 75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSES-KPD------L-IDLPGKALCISAG--DSHSACLLE 144 (423)
T ss_dssp SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSS-SCE------E-CCCSSCEEEEEEC--SSEEEEEET
T ss_pred CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCcccc-CCe------E-EcCCCCEEEEEcC--cCeEEEEeC
Confidence 34778888888888889999999997654332211110000000 000 0 0112346666653 334455577
Q ss_pred CCeEEEEEc--c-CCcc---------cccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcc--------
Q 038537 110 DKTVKAWRV--L-DKRC---------TCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSH-------- 169 (358)
Q Consensus 110 dg~i~iwd~--~-~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-------- 169 (358)
||.|..|-. . .+++ .++.. .....|..|+.. ..+.++...+|.|+.|-.....+..
T Consensus 145 ~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~--~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~ 220 (423)
T 3mvd_K 145 DGRVFAWGSFRDSHGNMGLTIDGNKRTPIDL--MEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSIS 220 (423)
T ss_dssp TSCEEEEECEECSSSEEESBTTBCEEEEEES--STTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTT
T ss_pred CCeEEEEeCCCCCCCCcCcCCCCCCceeeEe--cCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCcccccc
Confidence 888888874 2 1211 01111 123457777664 4456666789999999643221110
Q ss_pred -----------eeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcc----cc---ceeecccceeE
Q 038537 170 -----------TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFN----HG---GFLQGHCFAVL 231 (358)
Q Consensus 170 -----------~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~----~~---~~~~~~~~~~~ 231 (358)
.+..........|..++.. ....++.-..+|.|+.|-......... .. .........+.
T Consensus 221 ~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g---~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~ 297 (423)
T 3mvd_K 221 GEGRRGKRDLLRPTQLIITRAKPFEAIWAT---NYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIR 297 (423)
T ss_dssp SCSTTTTTTTSSCEEECCTTCCCEEEEEEE---TTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEE
T ss_pred cccccccccccCCeEEeecCCccEEEEEEC---CcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeE
Confidence 0111111112345555443 233344436889999996554211100 00 00011123456
Q ss_pred EEeeeCCEEEEeeCCCeEEEEEcCCCc--------eeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 232 CLVAIEKLIFSGSEDTTIRVWRRAEGG--------CYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 232 ~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
.++......+.-..||.|+.|=..... ........+..-...|..|+.-.. ..+....||.|..
T Consensus 298 ~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~--------hs~alt~~G~v~~ 369 (423)
T 3mvd_K 298 HIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEV--------CSYAVTIDGKLYS 369 (423)
T ss_dssp EEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETT--------EEEEEETTSCEEE
T ss_pred EEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCC--------eEEEEcCCCCEEE
Confidence 666666677777789999999643210 000111222222336888877654 3334468999999
Q ss_pred EEeee
Q 038537 304 WRVKV 308 (358)
Q Consensus 304 w~~~~ 308 (358)
|=...
T Consensus 370 wG~n~ 374 (423)
T 3mvd_K 370 WGSGV 374 (423)
T ss_dssp EECCT
T ss_pred ECCCC
Confidence 97654
No 349
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=88.60 E-value=9.3 Score=31.52 Aligned_cols=108 Identities=9% Similarity=0.066 Sum_probs=57.9
Q ss_pred ceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccc----cccccCeEEEEEcCC---CCEEEEEe-C-------CC
Q 038537 91 CVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF----VAHESNVNAIVVNQD---DGFVFTCS-S-------DG 155 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~~-~-------dg 155 (358)
....|+|.|+|+.|+.+...|.|++++........+..+ .........|+++|+ +..|..+. . ..
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~ 98 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT 98 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence 368899999998344556789999998532211111111 122346789999995 44444443 2 22
Q ss_pred cEEEEEceecCC----cceeeeeec---ccCCceeEEEEeecCCCcEEEEee
Q 038537 156 SVKIWRRVYREN----SHTLTMTLK---FQQSSVNALALSSFFDNYFLYSGS 200 (358)
Q Consensus 156 ~i~~wd~~~~~~----~~~~~~~~~---~~~~~i~~~~~~~~~~~~~l~~~~ 200 (358)
.|..+++..... ...+...+. ........++|.| ++.++++.+
T Consensus 99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p--dG~Lyv~~G 148 (353)
T 2g8s_A 99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG--KGYLFIALG 148 (353)
T ss_dssp EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS--SSEEEEEEC
T ss_pred EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC--CCcEEEEEC
Confidence 455555532211 111111111 1112346799998 886666543
No 350
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.43 E-value=21 Score=34.19 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=29.7
Q ss_pred CCceEEEEEeCCCCEEEEEecCCeEEEEEccCCc
Q 038537 89 RDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR 122 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 122 (358)
...+.+++..++..++++-+.|+++|+|++.+++
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~ 268 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 268 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTE
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCCCC
Confidence 3457788888888999999999999999999887
No 351
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=86.47 E-value=13 Score=30.72 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=37.5
Q ss_pred eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEcc-CCCcEEEEEee
Q 038537 236 IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSS-LDQTFKVWRVK 307 (358)
Q Consensus 236 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~-~dg~v~iw~~~ 307 (358)
++.++++.-..+.|...++..++...+ ...+......+..+++.|+ |.++++.. .+| +||.+.
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~rp~~v~~~pd------G~lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTED-GRILTDRGQRIRDVRTGPD------GYLYVLTDESSG--ELLKVS 351 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEE-EEESGGGCCCEEEEEECTT------SCEEEEECSTTE--EEEEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeee-EEcccCCCCceeEEEECCC------CcEEEEEeCCCC--EEEEEe
Confidence 356666666777888887775432111 1122233457899999999 76665432 344 566664
No 352
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.88 E-value=18 Score=32.01 Aligned_cols=75 Identities=5% Similarity=0.019 Sum_probs=51.8
Q ss_pred CeEEEEEcCCCCEEEEEeC-CCcEEEEEceecCC---------cceeeeeecccCCceeEEEEeecCCCcEEEEeecCCc
Q 038537 135 NVNAIVVNQDDGFVFTCSS-DGSVKIWRRVYREN---------SHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGS 204 (358)
Q Consensus 135 ~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~---------~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~ 204 (358)
....+..+|||+++++++. +.++.++|++.-.. ........+ -.......+|.+ +|+...+-..|..
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~--~G~aYTtlfidSq 400 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG--RGNAYTTLFIDSQ 400 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS--SSEEEEEETTTTE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC--CCceEeeeeecce
Confidence 3456788999999888765 78899999863211 011111222 244567788887 7877777778999
Q ss_pred EEEEEccC
Q 038537 205 INFWEKDK 212 (358)
Q Consensus 205 i~i~d~~~ 212 (358)
|.-|++..
T Consensus 401 vvkWni~~ 408 (638)
T 3sbq_A 401 VVKWNMEE 408 (638)
T ss_dssp EEEEEHHH
T ss_pred EEEEeccH
Confidence 99999876
No 353
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=85.85 E-value=15 Score=30.99 Aligned_cols=281 Identities=9% Similarity=0.036 Sum_probs=138.6
Q ss_pred eeeCCCcEEEEeCCC-ce----------eeeeeee-cccceEEEEecCCEEEEEeCCc-eEEEEeccccccccccccccc
Q 038537 4 TGSSSTRIRVWRQPD-CV----------ERGFIKA-RHGEVRAILAHDNMLFTTNKDC-KIRIWNFTVSDNFRTKKVTTL 70 (358)
Q Consensus 4 tg~~dg~v~vw~~~~-~~----------~~~~~~~-h~~~v~~i~~~~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~ 70 (358)
.-..||.|..|-... ++ ....+.. ....|..++....+.+.-..|+ .|..|-......+-....
T Consensus 30 al~~~g~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~--- 106 (406)
T 4d9s_A 30 ALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNS--- 106 (406)
T ss_dssp EEETTTEEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSC---
T ss_pred EEEeCCEEEEEeCCCCCCCCCCCcccCcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCC---
Confidence 335688898895422 11 1111111 1236778887776666666664 999997554322111000
Q ss_pred CCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCC-cc--------cccccccc-cccCeEEEE
Q 038537 71 PRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDK-RC--------TCVDSFVA-HESNVNAIV 140 (358)
Q Consensus 71 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~--------~~~~~~~~-~~~~v~~~~ 140 (358)
.......+.. .-....|..|+.. ....+.-..||.|..|-.... ++ .....+.. ....|..++
T Consensus 107 ---~~~~~p~~v~--~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va 179 (406)
T 4d9s_A 107 ---SDLFTPLPIK--ALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVA 179 (406)
T ss_dssp ---CCEEEEEECG--GGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEE
T ss_pred ---CccccceEec--ccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEe
Confidence 0000000000 1122346666653 344555678899999965321 10 00001111 123566666
Q ss_pred EcCCCCEEEEEeCCCcEEEEEceecCCc------c--eeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 141 VNQDDGFVFTCSSDGSVKIWRRVYRENS------H--TLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 141 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~------~--~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
.. ..+.++...+|.|+.|-....... . .+..........|..++. ...+.+.-..+|.|+.|-...
T Consensus 180 ~G--~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~----G~~ht~~l~~~G~v~~wG~n~ 253 (406)
T 4d9s_A 180 AG--AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVAC----GWRHTISVSYSGALYTYGWSK 253 (406)
T ss_dssp EC--SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEE----CSSEEEEEETTCCEEEEECCT
T ss_pred cC--CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEE----CCCcEEEEcCCCCEEEeeCCC
Confidence 64 455666678999999964322110 0 111111111234555554 345566667899999997543
Q ss_pred CcCCcc-------ccceee-cccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCc--------eeeeeeeeecCcccceEE
Q 038537 213 MSGGFN-------HGGFLQ-GHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGG--------CYHECLAVLDGHRGPVRC 276 (358)
Q Consensus 213 ~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~h~~~v~~ 276 (358)
...... ....+. .....+..++.-....++-..||.|+.|=..... ....+..........|..
T Consensus 254 ~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~ 333 (406)
T 4d9s_A 254 YGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQ 333 (406)
T ss_dssp TSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEE
T ss_pred CCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEE
Confidence 211100 000010 1122355666656666677789999999654311 011122221122346777
Q ss_pred EEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 277 LAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 277 i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
|+.-.. ..+....||.|..|=-..
T Consensus 334 va~G~~--------hs~alt~~G~v~~wG~n~ 357 (406)
T 4d9s_A 334 VSCGWR--------HTLAVTERNNVFAWGRGT 357 (406)
T ss_dssp EEECSS--------EEEEEETTSCEEEEECCT
T ss_pred EEeCCC--------eEEEEeCCCCEEEecCCC
Confidence 776544 444556789999997643
No 354
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=85.32 E-value=4.3 Score=36.93 Aligned_cols=37 Identities=19% Similarity=0.505 Sum_probs=31.6
Q ss_pred ceEEEEecCCEEEEEeCCceEEEEecccccccccccc
Q 038537 31 EVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKV 67 (358)
Q Consensus 31 ~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 67 (358)
.|.++.++..++++-+.|.++|+|++.+++++....+
T Consensus 223 ~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4667788889999999999999999999987766555
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=84.60 E-value=16 Score=30.42 Aligned_cols=151 Identities=10% Similarity=0.108 Sum_probs=86.7
Q ss_pred cEEEEeCCCc--eeeeeeeec------ccceEEEEec---------CCEEEEE-eCCceEEEEecccccccccccccccC
Q 038537 10 RIRVWRQPDC--VERGFIKAR------HGEVRAILAH---------DNMLFTT-NKDCKIRIWNFTVSDNFRTKKVTTLP 71 (358)
Q Consensus 10 ~v~vw~~~~~--~~~~~~~~h------~~~v~~i~~~---------~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~ 71 (358)
.|.+||+.+. +.++.+.-. ......+..+ +.++..+ +..+.|.|+|+.+++.-+.......+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 6889999998 888776542 2345566655 3344444 35778999999988765544322222
Q ss_pred CCceeeeecCCCccccCCCceEEEEEeCC----CCEEEEEecCCeEEEEEccCC-----ccc-ccccccccc---cCeEE
Q 038537 72 RRSSFLSFSKSNTQQQHRDCVSCMAFYHA----EGLLYTGSFDKTVKAWRVLDK-----RCT-CVDSFVAHE---SNVNA 138 (358)
Q Consensus 72 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~-----~~~-~~~~~~~~~---~~v~~ 138 (358)
.....+... ...+ .-...|..|+++|+ ++.|.-....+ -++|.+.+. ... .+..+ +.. ..-..
T Consensus 204 d~~~~~~i~-G~~~-~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYG-GKEY-EFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIA 279 (381)
T ss_dssp CSCEEEEET-TEEE-EECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEE
T ss_pred ccCcceEEC-CEEe-EeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcce
Confidence 211111000 0011 12357999999998 77777766554 344544322 100 11111 122 23345
Q ss_pred EEEc-CCCCEEEEEeCCCcEEEEEcee
Q 038537 139 IVVN-QDDGFVFTCSSDGSVKIWRRVY 164 (358)
Q Consensus 139 ~~~~-~~~~~l~~~~~dg~i~~wd~~~ 164 (358)
++++ .+|.++++--....|..|+...
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 6675 5777777778888999999753
No 356
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=82.92 E-value=18 Score=29.70 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=63.1
Q ss_pred CCceEEEEEeCCCCEEEEEecCCeEEEEEccCCcccccccc----cccccCeEEEEEcCC---CCEEEEE-e--CCCcEE
Q 038537 89 RDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKRCTCVDSF----VAHESNVNAIVVNQD---DGFVFTC-S--SDGSVK 158 (358)
Q Consensus 89 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~~~~---~~~l~~~-~--~dg~i~ 158 (358)
-...+.|+|.|+|.++++--..|.|++++..+++...+..+ .........|+++|+ +..|.+. + .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34478999999998766654489999998665542222211 223567899999995 3444443 2 344555
Q ss_pred EEEceecC----C---cceeeeeec-ccCCceeEEEEeecCCCcEEEEee
Q 038537 159 IWRRVYRE----N---SHTLTMTLK-FQQSSVNALALSSFFDNYFLYSGS 200 (358)
Q Consensus 159 ~wd~~~~~----~---~~~~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~ 200 (358)
-|.+.... . ...+...+. ........+.|.| ++.++++.+
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp--DG~Lyvt~G 158 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP--DKMLYAGTG 158 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT--TSCEEEECB
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC--CCCEEEEEC
Confidence 55544311 1 111111111 1222446789988 887777754
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=82.48 E-value=23 Score=30.52 Aligned_cols=110 Identities=6% Similarity=0.004 Sum_probs=59.3
Q ss_pred ceEEEEEeCCCC-EEEEEecCCeEEEEEccCCc-ccccccc----c-----ccccCeEEEEEcCC----CCEEEEEeCC-
Q 038537 91 CVSCMAFYHAEG-LLYTGSFDKTVKAWRVLDKR-CTCVDSF----V-----AHESNVNAIVVNQD----DGFVFTCSSD- 154 (358)
Q Consensus 91 ~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~----~-----~~~~~v~~~~~~~~----~~~l~~~~~d- 154 (358)
..+.|+|.|++. .|+++...|.|++++..... ...+..+ . ........|+++|+ +.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 367899999986 45666788999999754321 0111111 1 11456889999996 3333332221
Q ss_pred -----------CcEEEEEceecC-C-----cceeeeee--cccCCceeEEEEeecCCCcEEEEeecC
Q 038537 155 -----------GSVKIWRRVYRE-N-----SHTLTMTL--KFQQSSVNALALSSFFDNYFLYSGSSD 202 (358)
Q Consensus 155 -----------g~i~~wd~~~~~-~-----~~~~~~~~--~~~~~~i~~~~~~~~~~~~~l~~~~~d 202 (358)
..|.-|.+.... . ..+.+... .........|+|.| ++.++++.+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp--DG~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP--DGFLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT--TSCEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC--CCcEEEEeCCC
Confidence 134345543211 0 11111111 12233467889998 88877766543
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.35 E-value=23 Score=33.89 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=28.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEceecCC
Q 038537 135 NVNAIVVNQDDGFVFTCSSDGSVKIWRRVYREN 167 (358)
Q Consensus 135 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 167 (358)
.+.+++..++..++++.+.|+++|+|++.++..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCe
Confidence 567778888889999999999999999976654
No 359
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=78.96 E-value=28 Score=29.28 Aligned_cols=258 Identities=12% Similarity=0.056 Sum_probs=127.5
Q ss_pred ecccceEEEEecCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEE
Q 038537 27 ARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYT 106 (358)
Q Consensus 27 ~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 106 (358)
.....|..++....+.+.-..||.|..|-....-.+-..... ........ ..+ ....|..++... ...+.
T Consensus 13 ~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~---~~~~P~~v---~~l--~~~~i~~va~G~--~ht~a 82 (406)
T 4d9s_A 13 APPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAE---DRPSPTQL---SAL--DGHQIVSVTCGA--DHTVA 82 (406)
T ss_dssp --CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCC---CEEEEEEC---GGG--TTSCEEEEEECS--SEEEE
T ss_pred CCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCcc---cCcCCEEe---ccc--CCCCEEEEEeCc--ceEEE
Confidence 344578888888888888888999999976543222110000 00000000 011 123466666542 23333
Q ss_pred EecC-CeEEEEEccCC-c---------ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCc------c
Q 038537 107 GSFD-KTVKAWRVLDK-R---------CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENS------H 169 (358)
Q Consensus 107 ~~~d-g~i~iwd~~~~-~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~------~ 169 (358)
-..+ +.|..|-.... + ..+..........|..|+.. ..+.++...+|.|+.|-.....+. .
T Consensus 83 l~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G--~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~ 160 (406)
T 4d9s_A 83 YSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACG--DSHCLAVTMEGEVQSWGRNQNGQLGLGDTED 160 (406)
T ss_dssp EETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSCCC
T ss_pred EECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEC--hhheEEEcCCCcEEEeCCCCCccCCCCCCCC
Confidence 3444 48888854221 1 00111001122357777664 455666678999999965432111 0
Q ss_pred e-eeeeec-ccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCc------c-ccceee-cccceeEEEeeeCCE
Q 038537 170 T-LTMTLK-FQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGF------N-HGGFLQ-GHCFAVLCLVAIEKL 239 (358)
Q Consensus 170 ~-~~~~~~-~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------~-~~~~~~-~~~~~~~~~~~~~~~ 239 (358)
. ...... .....|..++. ...+.++-..+|.|+.|-........ . ...... .....+..++.....
T Consensus 161 ~~~p~~v~~~~~~~i~~va~----G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G~~h 236 (406)
T 4d9s_A 161 SLVPQKIQAFEGIRIKMVAA----GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRH 236 (406)
T ss_dssp EEEEEECGGGTTCCEEEEEE----CSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEECSSE
T ss_pred cccceEecccCCCcEEEEec----CCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEECCCc
Confidence 1 111111 11234555554 44566666789999999654311100 0 000010 111345555555666
Q ss_pred EEEeeCCCeEEEEEcCCCce--------eeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 240 IFSGSEDTTIRVWRRAEGGC--------YHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 240 l~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.+.-..+|.|+.|-...... ...+..........|..|+.-.. +.+.-..||.|..|=...
T Consensus 237 t~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~--------hs~alt~~G~v~~wG~n~ 305 (406)
T 4d9s_A 237 TISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWR--------HTMALTSDGKLYGWGWNK 305 (406)
T ss_dssp EEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSS--------EEEEEETTSCEEEEECCT
T ss_pred EEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCC--------EEEEEcCCCeEEEeeCCC
Confidence 67777899999996543210 00111111112234777766543 444456789999997543
No 360
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.59 E-value=7.3 Score=38.12 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=28.1
Q ss_pred CceEEEEEeCCCCEEEEEecCCeEEEEEccCCc
Q 038537 90 DCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR 122 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 122 (358)
..+.+++..++..++++-+.|+++|+|++.+++
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~ 270 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQ 270 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTTTE
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCCCC
Confidence 345666777788999999999999999999887
No 361
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=75.89 E-value=14 Score=33.71 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=25.9
Q ss_pred CceEEEEEeCCCCEEEEEecCCeEEEEEccCCc
Q 038537 90 DCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDKR 122 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 122 (358)
..|.++.+ +..++++-+.|+++|+|++.+++
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~ 252 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFT 252 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCc
Confidence 44666655 47799999999999999999987
No 362
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=75.39 E-value=30 Score=27.74 Aligned_cols=138 Identities=11% Similarity=0.097 Sum_probs=73.4
Q ss_pred EEeCCCCEEEEEe--c--CCeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEEeC-CCcEEEEEceecCCcce
Q 038537 96 AFYHAEGLLYTGS--F--DKTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTCSS-DGSVKIWRRVYRENSHT 170 (358)
Q Consensus 96 ~~~~~~~~l~~~~--~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~ 170 (358)
.|+++++.|+-.. . +..|...++.... ...+..+.. ..++++++.|.-.+. ...|...++..+. .+
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~---~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~--~~ 180 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEE---KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS--EA 180 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCC---CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE--EE
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCC---eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC--EE
Confidence 6677888888765 2 3455555655433 222332222 345677888876655 5667776664322 11
Q ss_pred eeeeecccCCceeEEEEeecCCCcEEEEeecCC--cEEEEEccCCcCCccccceeecccceeEEEeeeCCEEEEee--CC
Q 038537 171 LTMTLKFQQSSVNALALSSFFDNYFLYSGSSDG--SINFWEKDKMSGGFNHGGFLQGHCFAVLCLVAIEKLIFSGS--ED 246 (358)
Q Consensus 171 ~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d 246 (358)
.. .. .... ..+.| ++.+|+-...++ .|..-++.... .. .+.. ..+..++|+++.|+-+. ..
T Consensus 181 ~l--~~---~~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~--~~---~Lt~--~~~~~~~~~g~~Iy~~~~~~~ 245 (302)
T 3s25_A 181 LF--YD---CNCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPN--PV---VLTE--ANIEHYNVYGSLIFYQRGGDN 245 (302)
T ss_dssp EE--EC---SCEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCC--CE---ECSC--SCEEEEEEETTEEEEEECSSS
T ss_pred EE--eC---CCcc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCC--eE---EEeC--CCcceEEECCCEEEEEECCCC
Confidence 11 11 1222 23556 677776655433 45555554421 11 1211 22356889998887653 34
Q ss_pred CeEEEEEcCCC
Q 038537 247 TTIRVWRRAEG 257 (358)
Q Consensus 247 g~i~iwd~~~~ 257 (358)
+.|..-++...
T Consensus 246 ~~i~~~~~DG~ 256 (302)
T 3s25_A 246 PALCVVKNDGT 256 (302)
T ss_dssp CEEEEEETTSC
T ss_pred cEEEEEECCCC
Confidence 66777777654
No 363
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=75.33 E-value=39 Score=29.10 Aligned_cols=260 Identities=10% Similarity=0.074 Sum_probs=127.3
Q ss_pred cceEEEEecCCEEEEEeCCceEEEEecccccccccccccc------cCC-------Ccee--eeecCCCcccc-------
Q 038537 30 GEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTT------LPR-------RSSF--LSFSKSNTQQQ------- 87 (358)
Q Consensus 30 ~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~------~~~-------~~~~--~~~~~~~~~~~------- 87 (358)
..|..++..+.+.+.-..||.|..|-....-.+-...... ... .... ....+ ..+..
T Consensus 67 ~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~~v~~~~l~~~~ 145 (473)
T 3of7_A 67 AKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTP-AKIPRESFPPLA 145 (473)
T ss_dssp TCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSC-EECCGGGCHHHH
T ss_pred CCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCc-eecccccCCccc
Confidence 4688888888888888899999999765432221100000 000 0000 00000 00010
Q ss_pred CCCceEEEEEeCCCCEEEEEecCCeEEEEEcc---CCccc----------ccccccc-cccCeEEEEEcCCCCEEEEEeC
Q 038537 88 HRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVL---DKRCT----------CVDSFVA-HESNVNAIVVNQDDGFVFTCSS 153 (358)
Q Consensus 88 h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~----------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~ 153 (358)
....|..++.. ....+.-..+|.|..|-.. .+++- ....+.. ....|..|+.. ....++...
T Consensus 146 ~~~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G--~~hs~alt~ 221 (473)
T 3of7_A 146 EGHKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG--KDHILFLDE 221 (473)
T ss_dssp TTCCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC--SSEEEEEET
T ss_pred CCCcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec--CCeEEEEeC
Confidence 12456666653 3344555678888888641 11100 0001111 12347777664 456666678
Q ss_pred CCcEEEEEceecCCccee---------eeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcc------
Q 038537 154 DGSVKIWRRVYRENSHTL---------TMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFN------ 218 (358)
Q Consensus 154 dg~i~~wd~~~~~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------ 218 (358)
+|.|+.|-.........- ..........|..++. .....++-..+|.|+.|-.........
T Consensus 222 ~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~----G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~ 297 (473)
T 3of7_A 222 EGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIAS----GENHCFALTKDNKLVSWGLNQFGQCGVSEDVED 297 (473)
T ss_dssp TSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEE----CSSEEEEEETTSCEEEEEECTTSTTCCCSCCCT
T ss_pred CCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEec----CCCeEEEEecCCCEEEeCCCCCCCcCCCCcccC
Confidence 999999965432111100 0000001134555554 345566666799999996543111000
Q ss_pred -----ccceee-cccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCc-e---------------------eeeeeeeecCc
Q 038537 219 -----HGGFLQ-GHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGG-C---------------------YHECLAVLDGH 270 (358)
Q Consensus 219 -----~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~---------------------~~~~~~~~~~h 270 (358)
....+. .....+..++......+.-..||.|+.|=..... . ...+ ..+.+
T Consensus 298 ~~~~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P-~~v~~- 375 (473)
T 3of7_A 298 GALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLP-TKLNN- 375 (473)
T ss_dssp TCEEEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEE-EECCS-
T ss_pred CceeeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccC-cccCC-
Confidence 000001 1113455666555666666789999999653311 0 0001 11111
Q ss_pred ccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 271 RGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 271 ~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
...|..|+.-.. ..+....||.|..|=...
T Consensus 376 ~~~v~~Ia~G~~--------hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 376 VPKFKSVAAGSH--------HSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp SCCEEEEEECSS--------EEEEEETTSCEEEEECCT
T ss_pred CCceEEEEeCCC--------eEEEEeCCCcEEEeeCCC
Confidence 125677766544 444446799999997653
No 364
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=73.48 E-value=40 Score=28.35 Aligned_cols=271 Identities=10% Similarity=0.035 Sum_probs=137.8
Q ss_pred eCCCcEEEEeCCC-ce----------eeeeeeecccceEEEEecCCEEEEEeCCceEEEEecccccccccccc----ccc
Q 038537 6 SSSTRIRVWRQPD-CV----------ERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNFTVSDNFRTKKV----TTL 70 (358)
Q Consensus 6 ~~dg~v~vw~~~~-~~----------~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~----~~~ 70 (358)
..+|.|..|-... ++ ..-..-.....|..++....+.+.-..||.|..|-......+-.... ...
T Consensus 24 ~~~g~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~ 103 (413)
T 1a12_A 24 TEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMV 103 (413)
T ss_dssp CCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGS
T ss_pred cCCCcEEEEECCCCCcCCCCCCccccccceEccCCCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccC
Confidence 4678899995421 11 01111112356778888777878888999999997654322211000 000
Q ss_pred CCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEc--cC-Ccc----------cccccccccccCeE
Q 038537 71 PRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRV--LD-KRC----------TCVDSFVAHESNVN 137 (358)
Q Consensus 71 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~-~~~----------~~~~~~~~~~~~v~ 137 (358)
|.. + .-...|..++.. ....+.-..||.|..|-. .. +++ .+.. + .....|.
T Consensus 104 P~~-----------v-~l~~~i~~va~G--~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~-v-~~~~~i~ 167 (413)
T 1a12_A 104 PGK-----------V-ELQEKVVQVSAG--DSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQ-V-QLDVPVV 167 (413)
T ss_dssp CEE-----------C-CCCSCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEE-E-CCSSCEE
T ss_pred CeE-----------e-cCCCcEEEEecC--CCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEE-e-cCCCCEE
Confidence 000 0 012356666653 334455567888888864 11 110 0111 1 1234566
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEceecCCcc-------------------eee-eeecc----cCCceeEEEEeecCCC
Q 038537 138 AIVVNQDDGFVFTCSSDGSVKIWRRVYRENSH-------------------TLT-MTLKF----QQSSVNALALSSFFDN 193 (358)
Q Consensus 138 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-------------------~~~-~~~~~----~~~~i~~~~~~~~~~~ 193 (358)
.|+.- ..+.++-..||.|+.|=.....+.. .+. ..+.. ....|..++.. .
T Consensus 168 ~ia~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G----~ 241 (413)
T 1a12_A 168 KVASG--NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCG----A 241 (413)
T ss_dssp EEEEC--SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEE----T
T ss_pred EEEec--CceEEEEcCCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeC----C
Confidence 66664 3456666789999999654321110 000 00100 12345555553 3
Q ss_pred cEEEEeecCCcEEEEEccCCcCCc----------cccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCC------
Q 038537 194 YFLYSGSSDGSINFWEKDKMSGGF----------NHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEG------ 257 (358)
Q Consensus 194 ~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------ 257 (358)
.+.++-..+|.|+.|-........ .....+......+..++......++-..||.|+.|-....
T Consensus 242 ~hs~alt~~G~v~~wG~n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g 321 (413)
T 1a12_A 242 YFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLG 321 (413)
T ss_dssp TEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSC
T ss_pred CEEEEEeCCCCEEEEeCCCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCC
Confidence 444555689999999765421100 0000011111236666665666666778999999965321
Q ss_pred ---ceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 258 ---GCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 258 ---~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
.....+. .+.. ...|..|+.-.. ..+....||.|..|=...
T Consensus 322 ~~~~~~~~P~-~v~~-l~~v~~v~~G~~--------hs~alt~~G~v~~wG~n~ 365 (413)
T 1a12_A 322 EGAEEKSIPT-LISR-LPAVSSVACGAS--------VGYAVTKDGRVFAWGMGT 365 (413)
T ss_dssp TTCCCEEEEE-ECCS-SSSEEEEEECSS--------EEEEEETTSCEEEEECCT
T ss_pred CCCccccCCE-Eecc-cCceeEEEECcc--------eEEEEeCCCCEEEecCCC
Confidence 0001111 1111 226777776644 444445789999997653
No 365
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=67.22 E-value=49 Score=26.87 Aligned_cols=157 Identities=13% Similarity=0.093 Sum_probs=89.7
Q ss_pred CCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEc
Q 038537 39 DNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRV 118 (358)
Q Consensus 39 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 118 (358)
..+++.++.+|.++--.+..-........... .+.. .+.+..+........|+..+..|.+..+..
T Consensus 109 e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i-------------~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~ 174 (327)
T 3uc1_A 109 APYLVLATRNGLVKKSKLTDFDSNRSGGIVAV-------------NLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSA 174 (327)
T ss_dssp SSEEEEEETTSEEEEEEGGGGCCCCSSCEESC-------------BCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEC
T ss_pred CCEEEEEcCCCEEEEeEHHHhhccccCceEEE-------------EECC-CCEEEEEEEecCCCEEEEEECCCeEEEEEC
Confidence 56899999999999888765432221000000 1122 334555555555567888888999888877
Q ss_pred c--CCc-------ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCC-----cceeeeeecccCCceeE
Q 038537 119 L--DKR-------CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYREN-----SHTLTMTLKFQQSSVNA 184 (358)
Q Consensus 119 ~--~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-----~~~~~~~~~~~~~~i~~ 184 (358)
. .-. -.....+. ....|.++...+++..++..+..|.++.-.+..-.. .......+......+..
T Consensus 175 ~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~ 253 (327)
T 3uc1_A 175 TDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVG 253 (327)
T ss_dssp CTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEE
T ss_pred cccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEE
Confidence 6 211 00111222 245677777666677899999999998887643211 11111222221334444
Q ss_pred EEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 185 LALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 185 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
+.... +...++..+.+|.+.-++...
T Consensus 254 ~~~~~--~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 254 ALIVD--DDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEC--TTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEeC--CCccEEEEcCCCeEEEEehhh
Confidence 44433 445666667777777776654
No 366
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=66.53 E-value=58 Score=27.43 Aligned_cols=236 Identities=9% Similarity=-0.016 Sum_probs=116.8
Q ss_pred eeeCCCcEEEEeCCC-ce-----------eeeeeeecccceEEEEecCCEEEEEeCCceEEEEec--ccccccccccccc
Q 038537 4 TGSSSTRIRVWRQPD-CV-----------ERGFIKARHGEVRAILAHDNMLFTTNKDCKIRIWNF--TVSDNFRTKKVTT 69 (358)
Q Consensus 4 tg~~dg~v~vw~~~~-~~-----------~~~~~~~h~~~v~~i~~~~~~l~s~~~dg~i~iw~~--~~~~~~~~~~~~~ 69 (358)
.-..||.|..|-... ++ ..-..-.-...|..++....+.+.-..||.|..|-. .....+-.....
T Consensus 89 ~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~- 167 (423)
T 3mvd_K 89 VLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDG- 167 (423)
T ss_dssp EEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTB-
T ss_pred EEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCC-
Confidence 345789999995422 11 000111123467788887778888889999999986 322111100000
Q ss_pred cCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEEEccCC-cc--------------------ccccc
Q 038537 70 LPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAWRVLDK-RC--------------------TCVDS 128 (358)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~--------------------~~~~~ 128 (358)
...... . ......|..|+.. ....+.-..+|.|..|-.... ++ .+...
T Consensus 168 ----~~~~p~---~--~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v 236 (423)
T 3mvd_K 168 ----NKRTPI---D--LMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQL 236 (423)
T ss_dssp ----CEEEEE---E--SSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEE
T ss_pred ----CCceee---E--ecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEE
Confidence 000000 0 0122346666653 334555577899999964321 10 00000
Q ss_pred ccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCc-------ceeeeeecccCCceeEEEEeecCCCcEEEEeec
Q 038537 129 FVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENS-------HTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS 201 (358)
Q Consensus 129 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 201 (358)
.......|..++... ...++.-..+|.|..|-....... .............|..++. ...+.+.-..
T Consensus 237 ~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~----G~~ht~alt~ 311 (423)
T 3mvd_K 237 IITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG----GQHHTVILTT 311 (423)
T ss_dssp CCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE----CSSEEEEEET
T ss_pred eecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc----ccCeEEEEeC
Confidence 001123456665542 222333358899999965432111 0111111111335555554 3455566678
Q ss_pred CCcEEEEEccCCcCC--------ccccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCC
Q 038537 202 DGSINFWEKDKMSGG--------FNHGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAE 256 (358)
Q Consensus 202 dg~i~i~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 256 (358)
||.|+.|=....... ......+......+..++......++-..||.|+.|=...
T Consensus 312 ~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 312 DLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp TCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEETTEEEEEETTSCEEEEECCT
T ss_pred CCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCCCeEEEEcCCCCEEEECCCC
Confidence 999999965431100 0000111111125666666666666668899999996554
No 367
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=65.92 E-value=87 Score=29.21 Aligned_cols=114 Identities=11% Similarity=0.201 Sum_probs=60.1
Q ss_pred CCceEEEEEeCC-CCEEEEEecCCeEEEEEccCCcccccccccc----cccCeEEEEEcCC-CCEEEEEeCCCc----EE
Q 038537 89 RDCVSCMAFYHA-EGLLYTGSFDKTVKAWRVLDKRCTCVDSFVA----HESNVNAIVVNQD-DGFVFTCSSDGS----VK 158 (358)
Q Consensus 89 ~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~~~~dg~----i~ 158 (358)
...|.+|+++|. ...+++++..+.|...+=....+..+..... ....+.+|+++|. .+.++++..+.. -.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~ 93 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA 93 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccE
Confidence 357999999985 4566777777766655533333433322111 2346999999984 344555543321 34
Q ss_pred EEEceecCCcceeeee-ecc-----cCCceeEEEEeecCCCcEEEEeecCC
Q 038537 159 IWRRVYRENSHTLTMT-LKF-----QQSSVNALALSSFFDNYFLYSGSSDG 203 (358)
Q Consensus 159 ~wd~~~~~~~~~~~~~-~~~-----~~~~i~~~~~~~~~~~~~l~~~~~dg 203 (358)
||.-..+...++.... ... ....+..+++.|. +.+.++.+...+
T Consensus 94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~-~~~~v~~g~~~~ 143 (789)
T 1sqj_A 94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPF-NSNEVWMGTRTE 143 (789)
T ss_dssp EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETT-EEEEEEEECSSS
T ss_pred EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCC-CCCEEEEEeccC
Confidence 5544443333333221 000 0113567888872 345666665444
No 368
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=64.34 E-value=61 Score=26.90 Aligned_cols=70 Identities=10% Similarity=-0.056 Sum_probs=35.4
Q ss_pred CceEEEEEeC-CCCEEEEEecCC----eEEEEEccCCccccccc---ccc--------cccCeEEEEEcC-C-CCEEEEE
Q 038537 90 DCVSCMAFYH-AEGLLYTGSFDK----TVKAWRVLDKRCTCVDS---FVA--------HESNVNAIVVNQ-D-DGFVFTC 151 (358)
Q Consensus 90 ~~v~~~~~~~-~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~---~~~--------~~~~v~~~~~~~-~-~~~l~~~ 151 (358)
..|.+|++.| +...|.+++..| .|...+-....+..+.. +.. ....|.++++.| + ...+.++
T Consensus 55 ~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g 134 (394)
T 3b7f_A 55 HTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAG 134 (394)
T ss_dssp SEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEE
T ss_pred CceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEE
Confidence 4589999998 334455555554 44433221222222221 111 112577899987 2 4556666
Q ss_pred eCCCcEEE
Q 038537 152 SSDGSVKI 159 (358)
Q Consensus 152 ~~dg~i~~ 159 (358)
...+.|..
T Consensus 135 ~~~ggl~~ 142 (394)
T 3b7f_A 135 TSPQGLFR 142 (394)
T ss_dssp EETTEEEE
T ss_pred ecCCcEEE
Confidence 66665443
No 369
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=59.74 E-value=67 Score=25.84 Aligned_cols=209 Identities=10% Similarity=0.061 Sum_probs=0.0
Q ss_pred CCCCEEEEEecCCeEEEEEccCC------cccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc--------ee
Q 038537 99 HAEGLLYTGSFDKTVKAWRVLDK------RCTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRR--------VY 164 (358)
Q Consensus 99 ~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~--------~~ 164 (358)
++...+++.+.+|.|+--.+..- .......-....+.+..+........++..+..|.++-+.. ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Q ss_pred cCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCc----CCccccceeecccceeEEEeeeCCEE
Q 038537 165 RENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMS----GGFNHGGFLQGHCFAVLCLVAIEKLI 240 (358)
Q Consensus 165 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (358)
..........+.....-+..+......+..+++..+..|.++...+.... ..........+...--.........+
T Consensus 86 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 86 KGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKDEKV 165 (312)
T ss_dssp --CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTTCEE
T ss_pred CCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCCCEE
Q ss_pred EEeeCCCeEEEEEcCCCceeee-----eeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCCCCcc
Q 038537 241 FSGSEDTTIRVWRRAEGGCYHE-----CLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEK 314 (358)
Q Consensus 241 ~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~ 314 (358)
+..+.+|.+..+....-....+ ....+.. ...|.++...++ +..|++.+..|..+..++...+....
T Consensus 166 ~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~------~~~l~~vt~~G~~kr~~~~e~~~~~R 237 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKE------NPYLLIVSENGYGKRLNMSKISELKR 237 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTT------CSEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred EEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECC------CCeEEEEECCCceEEEEHHHhcccCC
No 370
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=58.31 E-value=66 Score=25.33 Aligned_cols=207 Identities=13% Similarity=0.011 Sum_probs=111.1
Q ss_pred CceEEEEEeCCCCEEEEEecCCeEEEE---EccCCcccccccccccccCeEEEEEcC-CCCEEEEEeCCCcEEEEEceec
Q 038537 90 DCVSCMAFYHAEGLLYTGSFDKTVKAW---RVLDKRCTCVDSFVAHESNVNAIVVNQ-DDGFVFTCSSDGSVKIWRRVYR 165 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~dg~i~iw---d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~ 165 (358)
+.+..+........|+.-+..|.++-- ++.......+ +. ....|..+.... +...++..+.+|.++-..+..-
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSL--KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCC--SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccccc--CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 345554444445566667778876644 3333221122 32 355676665422 5678999999999999987543
Q ss_pred C--CcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCcCCcc-----ccceeecccceeEEEe--ee
Q 038537 166 E--NSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMSGGFN-----HGGFLQGHCFAVLCLV--AI 236 (358)
Q Consensus 166 ~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~ 236 (358)
. ........++. ...+..+.... ....++..+..|.+..+.......... ....+.. ...+..+. .+
T Consensus 101 ~~~~~G~~~i~lke-gD~l~~~~~~~--~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~ 176 (276)
T 3no0_A 101 EYKAQGMPIIKLTE-GDEVVSIASSV--DETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNG 176 (276)
T ss_dssp TTCSTTEECSCCCT-TCCEEEEEECC--SSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESS
T ss_pred hhhcCCeEEEecCC-CCEEEEEEEeC--CCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCC
Confidence 2 11111122222 34455554443 556788888999988887654221111 0001111 12333332 23
Q ss_pred CCEEEEeeCCCeEEEEEcCCCceee---eeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEE--EEeeeCC
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCYH---ECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV--WRVKVMP 310 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i--w~~~~~~ 310 (358)
+..++..+..|.++...+..-.... +-+..+ ...+.+..+..... ...++..+.+|.+.. +++...+
T Consensus 177 ~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~------~~~i~~~t~~G~~ir~~~~~~~i~ 248 (276)
T 3no0_A 177 EPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKE------EVELLITTKNGKAFYDKINQKDIP 248 (276)
T ss_dssp CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESS------EEEEEEEETTSCEEEEEEEGGGSC
T ss_pred CCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCC------CCEEEEEcCCCeEEEeeeCHHHCC
Confidence 5688888999999888764321100 112222 22344555544333 345666677888887 8876544
No 371
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=57.01 E-value=70 Score=25.19 Aligned_cols=165 Identities=10% Similarity=0.087 Sum_probs=93.7
Q ss_pred ccceEEEEe---cCCEEEEEeCCceEEEEecccccccccccccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEE
Q 038537 29 HGEVRAILA---HDNMLFTTNKDCKIRIWNFTVSDNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLY 105 (358)
Q Consensus 29 ~~~v~~i~~---~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 105 (358)
...|.++.. ++.+++.++.+|.++-..+..-. .+....... .+.. .+.+..+........++
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i-------------~lke-gD~l~~~~~~~~~~~il 131 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPII-------------KLTE-GDEVVSIASSVDETHIL 131 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECS-------------CCCT-TCCEEEEEECCSSCEEE
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEE-------------ecCC-CCEEEEEEEeCCCCEEE
Confidence 445655533 35689999999999998876543 111110000 1122 23455555555556788
Q ss_pred EEecCCeEEEEEccCCc-------ccccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEceecCCcc---eeeeee
Q 038537 106 TGSFDKTVKAWRVLDKR-------CTCVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYRENSH---TLTMTL 175 (358)
Q Consensus 106 ~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~---~~~~~~ 175 (358)
..+..|.+..+....-. -.....+.. ...|..+...+++..++..+..|.++...+..-.... .-...+
T Consensus 132 l~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i 210 (276)
T 3no0_A 132 LFTKKGRVARFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS 210 (276)
T ss_dssp EEETTSEEEEEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC
T ss_pred EEECCCEEEEEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE
Confidence 88999998888764311 001122322 3566666655667789999999999988864322111 011111
Q ss_pred cccCCceeEEEEeecCCCcEEEEeecCCcEEE--EEccC
Q 038537 176 KFQQSSVNALALSSFFDNYFLYSGSSDGSINF--WEKDK 212 (358)
Q Consensus 176 ~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i--~d~~~ 212 (358)
.....+..+.... +...++..+.+|.+.. ++...
T Consensus 211 -~~~~~lv~~~~~~--~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 211 -GTKDTLVDLIPIK--EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp -CSSSCEEEEEEES--SEEEEEEEETTSCEEEEEEEGGG
T ss_pred -cCCCcEEEEEEeC--CCCEEEEEcCCCeEEEeeeCHHH
Confidence 2234444444332 4456777778888877 77655
No 372
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=53.25 E-value=41 Score=30.02 Aligned_cols=60 Identities=13% Similarity=0.013 Sum_probs=38.7
Q ss_pred ceEEEEEeCCCCEEEEEecC------------CeEEEEEccCCcccccccccccccCeEEEEEcCCCCEEEEE
Q 038537 91 CVSCMAFYHAEGLLYTGSFD------------KTVKAWRVLDKRCTCVDSFVAHESNVNAIVVNQDDGFVFTC 151 (358)
Q Consensus 91 ~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 151 (358)
..--|+|+|.|++++.-..+ ..+.+.+..+++...+..- .....++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~-P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVG-PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEEC-CTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeC-CCCccCcCeeECCCCCEEEEE
Confidence 35678999999866653322 2455566666663332222 235789999999999877665
No 373
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=47.54 E-value=59 Score=31.86 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=21.9
Q ss_pred eeCCEEEEeeCCCeEEEEEcCCCce
Q 038537 235 AIEKLIFSGSEDTTIRVWRRAEGGC 259 (358)
Q Consensus 235 ~~~~~l~~~~~dg~i~iwd~~~~~~ 259 (358)
++..++++-+.|+++|+|++.++++
T Consensus 247 ~~~~~lftL~~D~~LRiWsl~t~~~ 271 (1139)
T 4fhn_B 247 STYNVLVMLSLDYKLKVLDLSTNQC 271 (1139)
T ss_dssp TTTTEEEEEBTTCEEEEEETTTTEE
T ss_pred CCccEEEEEeCCCEEEEEECCCCCe
Confidence 4568999999999999999999854
No 374
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=46.85 E-value=1.6e+02 Score=26.34 Aligned_cols=139 Identities=12% Similarity=-0.019 Sum_probs=77.9
Q ss_pred CceeEEEEeecCCCcEEEEeec-CCcEEEEEccCCcCCc-----cccc-----eeecccceeEEEeeeCCEEEEeeCCCe
Q 038537 180 SSVNALALSSFFDNYFLYSGSS-DGSINFWEKDKMSGGF-----NHGG-----FLQGHCFAVLCLVAIEKLIFSGSEDTT 248 (358)
Q Consensus 180 ~~i~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~ 248 (358)
.....+.++| +|+++++++. +.++.++|+++....+ .... ...+..-.-+.|..+|+...+---|..
T Consensus 323 ksPHGv~vsP--DGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSS--DGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECT--TSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCCcceeeCC--CCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecce
Confidence 3456677777 8888777654 8899999998632100 1111 111222223667777765566668999
Q ss_pred EEEEEcCCC------ceeeeeeeeecCccc-----------------ceEE-EEeecc-----cceeeeCeEEEEccCCC
Q 038537 249 IRVWRRAEG------GCYHECLAVLDGHRG-----------------PVRC-LAASLE-----MEKVVMGFLVYSSSLDQ 299 (358)
Q Consensus 249 i~iwd~~~~------~~~~~~~~~~~~h~~-----------------~v~~-i~~~~~-----~~~~~~~~~l~s~~~dg 299 (358)
|.-|++... +.....+..+.-|-. ...+ -.|+.+ ++.......|+--|.|.
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk 480 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE 480 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence 999998642 111123333332221 1111 123322 22222245777778888
Q ss_pred cEEEEEeeeCCCCcceeeccc
Q 038537 300 TFKVWRVKVMPDQEKTMCLDY 320 (358)
Q Consensus 300 ~v~iw~~~~~~~~~~~~~~~~ 320 (358)
...|.|....+++-....++.
T Consensus 481 M~lv~D~P~~~EPHda~~v~~ 501 (638)
T 3sbq_A 481 MKLVHDGPTFAEPHDCIMARR 501 (638)
T ss_dssp CEEEEEEEESSCCCCEEEEEG
T ss_pred eEEEecCCCCCCCcceEEecH
Confidence 888999888776655554444
No 375
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=45.70 E-value=1.3e+02 Score=24.96 Aligned_cols=215 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred EEEeCCCCEEEEEecCCeEEEEEccCCccc------ccccccccccCeEEEEEcCCCCEEEEEeCCCcEEEEEc------
Q 038537 95 MAFYHAEGLLYTGSFDKTVKAWRVLDKRCT------CVDSFVAHESNVNAIVVNQDDGFVFTCSSDGSVKIWRR------ 162 (358)
Q Consensus 95 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~------ 162 (358)
+.+-|+...+++.+.+|.|+--.+..-+.. ....-......+..+........++..+..|.++-+..
T Consensus 1 ~dlI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 1 MDLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred CCcccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCC
Q ss_pred --eecCCcceeeeeecccCCceeEEEEeecCCCcEEEEeecCCcEEEEEccCCc----CCccccceeecccceeEEEeee
Q 038537 163 --VYRENSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSSDGSINFWEKDKMS----GGFNHGGFLQGHCFAVLCLVAI 236 (358)
Q Consensus 163 --~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 236 (358)
............+.....-+..+.+....+..+|+.++..|.++.-.+.... ..........+...-...+...
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~ 160 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDG 160 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECS
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCC
Q ss_pred CCEEEEeeCCCeEEEEEcCCCceeeeeeeeecC----cccceEEEEeec-------------------------------
Q 038537 237 EKLIFSGSEDTTIRVWRRAEGGCYHECLAVLDG----HRGPVRCLAASL------------------------------- 281 (358)
Q Consensus 237 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----h~~~v~~i~~~~------------------------------- 281 (358)
...++..+.+|.+..++...-....+.-.-..+ ....|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccc
Q ss_pred ----ccceeeeCeEEEEccCCCcEEEEEeeeCCCCcce
Q 038537 282 ----EMEKVVMGFLVYSSSLDQTFKVWRVKVMPDQEKT 315 (358)
Q Consensus 282 ----~~~~~~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 315 (358)
+ +..+++.+..|..+...+...+.....
T Consensus 241 ~~~~~------~~~il~vTe~G~gKrt~~~e~~~~~Rg 272 (370)
T 3l6v_A 241 ADNGD------VAYILTATENGYGKRTPLAEYPRKGRG 272 (370)
T ss_dssp ------------CEEEEEETTSEEEEEEGGGSCCBCTT
T ss_pred ccccC------CceEEEeeCCCCEEEEEHHHhcccccC
No 376
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=44.82 E-value=1.9e+02 Score=26.64 Aligned_cols=110 Identities=20% Similarity=0.245 Sum_probs=59.9
Q ss_pred ceEEEEEeCCC-CEEEEEecCCeEEEEEccCCcccccccccc----cccCeEEEEEcC-CCCEEEEEeCC-------CcE
Q 038537 91 CVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCVDSFVA----HESNVNAIVVNQ-DDGFVFTCSSD-------GSV 157 (358)
Q Consensus 91 ~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~~d-------g~i 157 (358)
.|..|+++|.. ..++++...+.|...+-....+..+..... ....|.+|+++| +.+.++++... +..
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~~ 103 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNMG 103 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCCc
Confidence 79999999864 456667666766666544444434322111 124699999998 44445444421 135
Q ss_pred EEEEceecCCcceeeee-ecc-----cCCceeEEEEeecCCCcEEEEeec
Q 038537 158 KIWRRVYRENSHTLTMT-LKF-----QQSSVNALALSSFFDNYFLYSGSS 201 (358)
Q Consensus 158 ~~wd~~~~~~~~~~~~~-~~~-----~~~~i~~~~~~~~~~~~~l~~~~~ 201 (358)
.+|.-..+....+.... ... ....+..+++.|. +.+.++.+..
T Consensus 104 ~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~-~~~~v~~g~~ 152 (737)
T 2cn3_A 104 AILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPN-DNRILYLGTR 152 (737)
T ss_dssp EEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSS-CTTCEEEECS
T ss_pred cEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCC-CCCEEEEeec
Confidence 56665555444443321 110 0113467888873 3456666653
No 377
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=40.96 E-value=1.3e+02 Score=26.88 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=40.0
Q ss_pred CceEEEEEeCCCCEEEEEec------------CCeEEEEEccCCcccccccccc-cccCeEEEEEcCCCCEEEEEe
Q 038537 90 DCVSCMAFYHAEGLLYTGSF------------DKTVKAWRVLDKRCTCVDSFVA-HESNVNAIVVNQDDGFVFTCS 152 (358)
Q Consensus 90 ~~v~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 152 (358)
.....|.|.++|.+.+.... ...+..++..+++...+ +.. ....++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~f--l~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRF--MVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEE--EECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEE--EeCCCCccccCCEECCCCCEEEEEE
Confidence 45678999999987663321 12566666666663222 222 235689999999999887764
No 378
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=40.52 E-value=1.6e+02 Score=24.55 Aligned_cols=147 Identities=12% Similarity=0.178 Sum_probs=75.6
Q ss_pred eEEEEecccc--cccccccccccCCCceeeeecCCCccccCCCceEEEEEe---CC----CCEEEEEe-cCCeEEEEEcc
Q 038537 50 KIRIWNFTVS--DNFRTKKVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFY---HA----EGLLYTGS-FDKTVKAWRVL 119 (358)
Q Consensus 50 ~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~---~~----~~~l~~~~-~dg~i~iwd~~ 119 (358)
+|.+||+.+. +.++...+... .......+..+.+. |. +.++..+. ..+-|.++|+.
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~--------------~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~ 189 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTR--------------LVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHK 189 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGG--------------GCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETT
T ss_pred eEEEEECCCCCceeEEEEECCHH--------------hcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECC
Confidence 4666777766 55544333211 11123457777777 22 33444443 35789999998
Q ss_pred CCccccccc--ccc----------c----ccCeEEEEEcCC----CCEEEEEeCCCcEEEEEceecCC---cceeeeeec
Q 038537 120 DKRCTCVDS--FVA----------H----ESNVNAIVVNQD----DGFVFTCSSDGSVKIWRRVYREN---SHTLTMTLK 176 (358)
Q Consensus 120 ~~~~~~~~~--~~~----------~----~~~v~~~~~~~~----~~~l~~~~~dg~i~~wd~~~~~~---~~~~~~~~~ 176 (358)
+++.-.+.. +.. . ...+..|+++|+ ++.|.-..-.+ -++|.+.+.-. .........
T Consensus 190 ~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~ 268 (381)
T 3q6k_A 190 KQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL 268 (381)
T ss_dssp TTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE
T ss_pred CCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe
Confidence 776221110 000 0 246788899987 66666655544 24444432110 000011111
Q ss_pred ccC---CceeEEEEeecCCCcEEEEeecCCcEEEEEccC
Q 038537 177 FQQ---SSVNALALSSFFDNYFLYSGSSDGSINFWEKDK 212 (358)
Q Consensus 177 ~~~---~~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 212 (358)
+.. ..-..+++.+ .+|.++++--....|..|+..+
T Consensus 269 G~kg~~s~~~~~~~D~-~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 269 GNRGKYNDAIALAYDP-KTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EECCTTCCEEEEEECT-TTCEEEEEESSSSEEEEEETTS
T ss_pred eecCCCCCcceEEEeC-CCCeEEEEeccCCeEEEEeCCC
Confidence 112 2223344532 2677777777788899998764
No 379
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=37.60 E-value=2.6e+02 Score=26.07 Aligned_cols=147 Identities=10% Similarity=0.120 Sum_probs=68.7
Q ss_pred ccCeEEEEEcCC-CCEEEEEeCCCcEEEEEceecCCcceeeeeecc----cCCceeEEEEeecCCCcEEEEeecCCc---
Q 038537 133 ESNVNAIVVNQD-DGFVFTCSSDGSVKIWRRVYRENSHTLTMTLKF----QQSSVNALALSSFFDNYFLYSGSSDGS--- 204 (358)
Q Consensus 133 ~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~l~~~~~dg~--- 204 (358)
...|.+|+++|. ...+++++..+.|...+ .+....+....... ....+.++++.|. +.+.++++..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~-~~~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPN-NPDRLYLAQGRYVGDE 90 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETT-EEEEEEEEECSCTTSS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCC-CCCEEEEEeCccCCCc
Confidence 468999999985 45677777777655443 33333333221110 2346889999872 2334444432211
Q ss_pred -EEEEEccCCcCCccccce-------eec-ccceeEEEee-eCCEEEEeeCCCeEEEEEcCCCceeeeeeeeec---Ccc
Q 038537 205 -INFWEKDKMSGGFNHGGF-------LQG-HCFAVLCLVA-IEKLIFSGSEDTTIRVWRRAEGGCYHECLAVLD---GHR 271 (358)
Q Consensus 205 -i~i~d~~~~~~~~~~~~~-------~~~-~~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~h~ 271 (358)
-.||.............. ..+ +....+.++| +++.++.+...+. ||....+...++.+.... ...
T Consensus 91 ~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG~TW~~~~~~~~~~~~~ 168 (789)
T 1sqj_A 91 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRAKTWTNVTSIPDAFTNG 168 (789)
T ss_dssp CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTTSSCEEETTSCCCCSTT
T ss_pred ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCCcccCCCccCccccCCC
Confidence 334433322111111100 001 0112345555 3456666664443 343333322233332211 112
Q ss_pred cceEEEEeecccc
Q 038537 272 GPVRCLAASLEME 284 (358)
Q Consensus 272 ~~v~~i~~~~~~~ 284 (358)
..+..|.++|..+
T Consensus 169 ~~~~~i~~~p~~~ 181 (789)
T 1sqj_A 169 IGYTSVIFDPERN 181 (789)
T ss_dssp TCEEEEEECTTST
T ss_pred CCeEEEEECCCCC
Confidence 4578899988643
No 380
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=33.20 E-value=2.9e+02 Score=25.39 Aligned_cols=199 Identities=8% Similarity=0.021 Sum_probs=94.4
Q ss_pred eEEEE-EeCCCCEEEEE-e----cCCeEEEEEccCCcccccc-ccc-cccc------CeEEEEEcCCCCEEEEEe-----
Q 038537 92 VSCMA-FYHAEGLLYTG-S----FDKTVKAWRVLDKRCTCVD-SFV-AHES------NVNAIVVNQDDGFVFTCS----- 152 (358)
Q Consensus 92 v~~~~-~~~~~~~l~~~-~----~dg~i~iwd~~~~~~~~~~-~~~-~~~~------~v~~~~~~~~~~~l~~~~----- 152 (358)
...+. ++|++++++.+ | .-..++++|+.+++ .+. .+. ..+. ....++|..+...+++..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~--~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~ 208 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKD--FVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNE 208 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTE--ECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTC
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCC--cCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCC
Confidence 44555 78998877654 2 22479999999987 332 222 1001 113447764333333321
Q ss_pred -----CCCcEEEEEceecCCcceeeeeecccCCce-eEEEEeecCCCc-----EEEEeec---CCcEEEEEccCCcCCcc
Q 038537 153 -----SDGSVKIWRRVYRENSHTLTMTLKFQQSSV-NALALSSFFDNY-----FLYSGSS---DGSINFWEKDKMSGGFN 218 (358)
Q Consensus 153 -----~dg~i~~wd~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~-----~l~~~~~---dg~i~i~d~~~~~~~~~ 218 (358)
....|+.|.+-+..........- ....+ .....++ ++. .+++.+. ...+.+.+.........
T Consensus 209 ~~~~~~~~~v~~~~~Gt~~~~~~~v~~~--~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 284 (711)
T 4hvt_A 209 ITSSLYPNSLYIWKRGESIEKAKKLFEV--PKEYIYVSAGKLL--SDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ 284 (711)
T ss_dssp BCTTSSBCEEEEEETTSCGGGCEEEEEC--CTTSCEEEEEESS--CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE
T ss_pred cCcCCCCCEEEEEECCCChHHCeEEecc--CCCceEEEEEEec--CCCceEEEEEEEEecccCceeEEEEcCCCCCCcce
Confidence 12457778765544333333322 22222 2233333 443 3444332 23456666553222111
Q ss_pred ccceeecccceeEEEeeeCCEEEEe----------eCCCeEEEEEcCCCc------eeeeeeeeecCcccceEEEEeecc
Q 038537 219 HGGFLQGHCFAVLCLVAIEKLIFSG----------SEDTTIRVWRRAEGG------CYHECLAVLDGHRGPVRCLAASLE 282 (358)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~l~~~----------~~dg~i~iwd~~~~~------~~~~~~~~~~~h~~~v~~i~~~~~ 282 (358)
.. .......+ .-...+.+++.. ...+.|...|+.+.. ..++.+. .......+..+.|..+
T Consensus 285 ~l--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 360 (711)
T 4hvt_A 285 KI--NMPSDATL-QGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILF-TPTANEVFNFISTTKD 360 (711)
T ss_dssp EC--CSCTTCEE-EEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEE-CCCTTEEEEEEEECSS
T ss_pred Ee--ecCCcceE-eeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEE-CCCCCCeEEEEEEECC
Confidence 11 11111111 122344444422 246778899887642 1111111 1223446778888875
Q ss_pred cceeeeCeEEEEccCCCc--EEEEEee
Q 038537 283 MEKVVMGFLVYSSSLDQT--FKVWRVK 307 (358)
Q Consensus 283 ~~~~~~~~~l~s~~~dg~--v~iw~~~ 307 (358)
.++++...++. |.++++.
T Consensus 361 -------~l~~~~~~~~~~~l~~~~~~ 380 (711)
T 4hvt_A 361 -------RVFLATYDNVVAKVVTFTLE 380 (711)
T ss_dssp -------CEEEEEEETTEEEEEEECEE
T ss_pred -------EEEEEEEECCEEEEEEEECC
Confidence 57777777775 4555553
No 381
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=32.90 E-value=1.8e+02 Score=26.52 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=38.1
Q ss_pred CEEEEeeCCCeEEEE-EcCCCceeeeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 238 KLIFSGSEDTTIRVW-RRAEGGCYHECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 238 ~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
..++.|+.+|.|.-. .........+.+..+ ....+|..|.++++.. ..+|..++.++.++|
T Consensus 416 tV~flGT~~G~l~Kvv~~~~~~~~~ee~~~~-~~~~pI~~l~l~~~~~----~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 416 DVMFVSTDRGALHKAISLEHAVHIIEETQLF-QDFEPVQTLLLSSKKG----NRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEEETTSEEEEEEECSSSEEEEEEEECC-TTCCCCCEEEECCSSS----SCEEEEECSSCEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCceEEEEeccc-CCCCcceeeEeccCCC----ccEEEEEEcCeEEEE
Confidence 367888999987543 333332222223233 3456899999998821 178888888876665
No 382
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=31.02 E-value=1.1e+02 Score=26.94 Aligned_cols=69 Identities=10% Similarity=0.158 Sum_probs=43.0
Q ss_pred ceEEEEEeCC--CCEEEEEecCCeEEEEEccCCccc--cccc--ccccccCeE-EEEEcCCCCEEEEEeCCCcEEE
Q 038537 91 CVSCMAFYHA--EGLLYTGSFDKTVKAWRVLDKRCT--CVDS--FVAHESNVN-AIVVNQDDGFVFTCSSDGSVKI 159 (358)
Q Consensus 91 ~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~--~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~ 159 (358)
..+.|+.... -..++.|+.+|.|.-..+...... .... +.....+|. .|.++++...|++++.++.+++
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 4666666543 346788999998876655432100 1111 122346785 8999999999999887765444
No 383
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=30.06 E-value=2.6e+02 Score=23.91 Aligned_cols=161 Identities=14% Similarity=0.058 Sum_probs=85.0
Q ss_pred cCeEEEEEcCCCCEEEEEeCCCcEEEEEceec---------C---CcceeeeeecccCCceeEEEEeecCCCcEEEEeec
Q 038537 134 SNVNAIVVNQDDGFVFTCSSDGSVKIWRRVYR---------E---NSHTLTMTLKFQQSSVNALALSSFFDNYFLYSGSS 201 (358)
Q Consensus 134 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~---------~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~ 201 (358)
..|..|+.. ....++...+|.|+.|-.... . ....+..........|..++. .....++-..
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~----G~~hs~alt~ 221 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAP----GKDHILFLDE 221 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEE----CSSEEEEEET
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEe----cCCeEEEEeC
Confidence 457777665 445666678999999975210 0 000111111111224656655 4456666678
Q ss_pred CCcEEEEEccCCcCCcc---------ccceeecccceeEEEeeeCCEEEEeeCCCeEEEEEcCCCc------------ee
Q 038537 202 DGSINFWEKDKMSGGFN---------HGGFLQGHCFAVLCLVAIEKLIFSGSEDTTIRVWRRAEGG------------CY 260 (358)
Q Consensus 202 dg~i~i~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------~~ 260 (358)
+|.|+.|-......... ......-....+..++......++-..+|.|+.|-..... ..
T Consensus 222 ~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~ 301 (473)
T 3of7_A 222 EGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALV 301 (473)
T ss_dssp TSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEE
T ss_pred CCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCcee
Confidence 99999996544211000 0000000113466666666777777789999999654210 11
Q ss_pred eeeeeeecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeee
Q 038537 261 HECLAVLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKV 308 (358)
Q Consensus 261 ~~~~~~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~ 308 (358)
..+..........|..|+.... .-+....||.|..|--..
T Consensus 302 ~~P~~v~~~~~~~i~~ia~G~~--------hs~~lt~~G~v~~wG~n~ 341 (473)
T 3of7_A 302 TKPKRLALPDNVVIRSIAAGEH--------HSLILSQDGDLYSCGRLD 341 (473)
T ss_dssp EEEEECCCCTTCCEEEEEECSS--------EEEEEETTSCEEEEEECT
T ss_pred eccccccccCCccEEEEEeCCC--------eEEEEeCCCeEEEEECCC
Confidence 1122111112246777776654 334446789999998653
No 384
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=27.44 E-value=1.7e+02 Score=25.49 Aligned_cols=69 Identities=10% Similarity=0.177 Sum_probs=42.9
Q ss_pred ceEEEEEeCC----C--CEEEEEecCCeEEEEEccCCc------cccccccc--ccccCeEEEEEcCCCCEEEEEeCCCc
Q 038537 91 CVSCMAFYHA----E--GLLYTGSFDKTVKAWRVLDKR------CTCVDSFV--AHESNVNAIVVNQDDGFVFTCSSDGS 156 (358)
Q Consensus 91 ~v~~~~~~~~----~--~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~ 156 (358)
..+.|+...- + ..++.|+.+|.|.-.-+.... ...+..+. ....+|..|.++++..+|.+++.++.
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V 484 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGV 484 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeE
Confidence 4577766532 3 357789999977644332211 00111222 23578999999999999999988875
Q ss_pred EEE
Q 038537 157 VKI 159 (358)
Q Consensus 157 i~~ 159 (358)
++|
T Consensus 485 ~~v 487 (495)
T 1q47_A 485 AQL 487 (495)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 385
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=27.32 E-value=2e+02 Score=25.66 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=36.3
Q ss_pred CEEEEeeCCCeEEEEEcCCCc-ee-eeeeeeec--CcccceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 238 KLIFSGSEDTTIRVWRRAEGG-CY-HECLAVLD--GHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~-~~-~~~~~~~~--~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
..+..|+.+|.|.-.-..... .. .-.+..+. ....+|..|.++++ ...|..++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~------~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAE------RRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETT------TTEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCC------CCEEEEEecceEEEc
Confidence 467788899987644332211 00 01122222 34568999999988 667877877766555
No 386
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=27.19 E-value=1.8e+02 Score=25.32 Aligned_cols=60 Identities=12% Similarity=0.104 Sum_probs=36.6
Q ss_pred CEEEEeeCCCeEEEEEcCCCce----eeeeeeeec--CcccceEEEEeecccceeeeCeEEEEccCCCcEEE
Q 038537 238 KLIFSGSEDTTIRVWRRAEGGC----YHECLAVLD--GHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKV 303 (358)
Q Consensus 238 ~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~--~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~i 303 (358)
..++.|+.+|.|.-.-+..... ....+..+. ....+|..|.++++ ..+|..++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~------~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTK------QQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETT------TTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCC------CCEEEEEECCeEEEE
Confidence 4677889999875443322110 001222222 23578999999998 678888888876665
No 387
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=24.83 E-value=2.3e+02 Score=25.37 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=29.5
Q ss_pred EEEeeeCCEEEEeeCC------------CeEEEEEcCCCceeeeeeeeecC-cccceEEEEeecc
Q 038537 231 LCLVAIEKLIFSGSED------------TTIRVWRRAEGGCYHECLAVLDG-HRGPVRCLAASLE 282 (358)
Q Consensus 231 ~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~-h~~~v~~i~~~~~ 282 (358)
+++++.|++++.-..+ ..+.+.+..+++. ...+.+ -...++.++|+|+
T Consensus 481 L~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~----~rf~~~P~gaE~TG~~fspD 541 (592)
T 3zwu_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEI----RRFMVGPIGCEVTGISFSPD 541 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCE----EEEEECCTTCEEEEEEECTT
T ss_pred eEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeE----EEEEeCCCCccCcCeeECCC
Confidence 5677788866654332 2355566666643 222323 3468999999998
No 388
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=24.82 E-value=1.7e+02 Score=26.07 Aligned_cols=69 Identities=7% Similarity=0.053 Sum_probs=42.3
Q ss_pred ceEEEEEe----CCC---CEEEEEecCCeEEEEEccC-Cc---cccccccc--ccccCeEEEEEcCCCCEEEEEeCCCcE
Q 038537 91 CVSCMAFY----HAE---GLLYTGSFDKTVKAWRVLD-KR---CTCVDSFV--AHESNVNAIVVNQDDGFVFTCSSDGSV 157 (358)
Q Consensus 91 ~v~~~~~~----~~~---~~l~~~~~dg~i~iwd~~~-~~---~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i 157 (358)
..+.|+.. .++ ..++.|+.+|.|.-.-... .. ...+..+. ....+|..+.++++...|.+++.++.+
T Consensus 363 ~~T~IaVd~v~a~~g~~ytVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~ 442 (590)
T 3nvq_A 363 HYQKVAVHRMQASHGETFHVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVS 442 (590)
T ss_dssp CEEEEEEEEEECTTSCEEEEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEE
T ss_pred cEEEEEEEEEeccCCCceEEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEE
Confidence 35556543 233 3677899999876443322 21 00111121 245689999999999999998887755
Q ss_pred EE
Q 038537 158 KI 159 (358)
Q Consensus 158 ~~ 159 (358)
++
T Consensus 443 qV 444 (590)
T 3nvq_A 443 QV 444 (590)
T ss_dssp EE
T ss_pred Ec
Confidence 54
No 389
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=24.05 E-value=2.8e+02 Score=24.47 Aligned_cols=70 Identities=16% Similarity=0.140 Sum_probs=41.4
Q ss_pred eEEEEEcC--CCCEEEEEeCCCcEEEEEceecCCcceeeee--ecccCCcee-EEEEeecCCCcEEEEeecCCcEEE
Q 038537 136 VNAIVVNQ--DDGFVFTCSSDGSVKIWRRVYRENSHTLTMT--LKFQQSSVN-ALALSSFFDNYFLYSGSSDGSINF 207 (358)
Q Consensus 136 v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~~~~~i~-~~~~~~~~~~~~l~~~~~dg~i~i 207 (358)
.++|+... +...++.|+.+|.|.-..+............ +.....+|. .+.+++ +..+|++++.++.+++
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~--~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSI--NQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECT--TSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEcc--CCCeEEEEecccccee
Confidence 45555443 3346778899998876655433211011111 122245774 888887 7888988887765555
No 390
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=22.16 E-value=3.1e+02 Score=22.12 Aligned_cols=247 Identities=11% Similarity=0.053 Sum_probs=126.4
Q ss_pred CCEEEEEeCCceEEEEecccccccccc--cccccCCCceeeeecCCCccccCCCceEEEEEeCCCCEEEEEecCCeEEEE
Q 038537 39 DNMLFTTNKDCKIRIWNFTVSDNFRTK--KVTTLPRRSSFLSFSKSNTQQQHRDCVSCMAFYHAEGLLYTGSFDKTVKAW 116 (358)
Q Consensus 39 ~~~l~s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~iw 116 (358)
...+++.+.+|.|+--.+.+......- ..... . ....+.+..+........|+.-+..|.++-.
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~-------------~-~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~ 68 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGA-------------G-LKQDDIVAHFFVCSTHDLILFFTTQGRVYRA 68 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------C-------------C-CCGGGCEEEEEEEETTSEEEEEETTSEEEEE
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCcccc-------------c-cCCCCEEEEEEEeCCCCEEEEEeCCCeEEEE
Confidence 346788899999987665432211100 00000 0 1123345555444455566666777876655
Q ss_pred Ec---cCC----cccccc---cccccccCeEEEEEcC---CCCEEEEEeCCCcEEEEEceecCCc---ceeeeeecccCC
Q 038537 117 RV---LDK----RCTCVD---SFVAHESNVNAIVVNQ---DDGFVFTCSSDGSVKIWRRVYRENS---HTLTMTLKFQQS 180 (358)
Q Consensus 117 d~---~~~----~~~~~~---~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~wd~~~~~~~---~~~~~~~~~~~~ 180 (358)
.. ... +-.++. .+. ....|..+..-+ +..+++..+.+|.++-..+..-... ......++. ..
T Consensus 69 ~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D 146 (327)
T 3uc1_A 69 KAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-ND 146 (327)
T ss_dssp EGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TC
T ss_pred EHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CC
Confidence 43 222 111211 122 244566554433 5779999999999999887543221 111222333 34
Q ss_pred ceeEEEEeecCCCcEEEEeecCCcEEEEEcc--CCcCCccc-----cceeecccceeEEEee--eCCEEEEeeCCCeEEE
Q 038537 181 SVNALALSSFFDNYFLYSGSSDGSINFWEKD--KMSGGFNH-----GGFLQGHCFAVLCLVA--IEKLIFSGSEDTTIRV 251 (358)
Q Consensus 181 ~i~~~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i 251 (358)
.+..+.... ....++..+..|.+..+... ........ ...+. ....+.++.+ .+..++..+..|.++.
T Consensus 147 ~lv~~~~~~--~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr 223 (327)
T 3uc1_A 147 ELVGAVLCS--AGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKR 223 (327)
T ss_dssp CEEEEEEEC--TTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEE
T ss_pred EEEEEEEec--CCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEE
Confidence 455555444 55678888899999888776 32111110 00111 1223444332 3568888999999988
Q ss_pred EEcCCCceee---eeee--eecCcccceEEEEeecccceeeeCeEEEEccCCCcEEEEEeeeCC
Q 038537 252 WRRAEGGCYH---ECLA--VLDGHRGPVRCLAASLEMEKVVMGFLVYSSSLDQTFKVWRVKVMP 310 (358)
Q Consensus 252 wd~~~~~~~~---~~~~--~~~~h~~~v~~i~~~~~~~~~~~~~~l~s~~~dg~v~iw~~~~~~ 310 (358)
-.+..-.... +-+. .+..-.+.+..+....+ ...++..+.+|.+.-+++...+
T Consensus 224 t~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~------~~~i~l~T~~G~~ir~~~~~i~ 281 (327)
T 3uc1_A 224 TAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDD------DSELYAVTSGGGVIRTAARQVR 281 (327)
T ss_dssp EEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECT------TCEEEEEEGGGCEEEEEGGGSC
T ss_pred EEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCC------CccEEEEcCCCeEEEEehhhcc
Confidence 7754321100 0111 12121234555444333 3455556677888888776543
No 391
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=21.57 E-value=4.8e+02 Score=24.09 Aligned_cols=115 Identities=13% Similarity=0.124 Sum_probs=57.4
Q ss_pred CCCceEEEEEeCCC-CEEEEEecCCeEEEEEccCCccccccccc-----c----cccCeEEEEEcC-CCCEEEEEeCC--
Q 038537 88 HRDCVSCMAFYHAE-GLLYTGSFDKTVKAWRVLDKRCTCVDSFV-----A----HESNVNAIVVNQ-DDGFVFTCSSD-- 154 (358)
Q Consensus 88 h~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~----~~~~v~~~~~~~-~~~~l~~~~~d-- 154 (358)
-.+.|.+|.++|.+ ..++++...|.|...+=....+..+.... . ....+.+|+++| +.+.++++..+
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~ 98 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYV 98 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCT
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccc
Confidence 45679999999965 56666666665554432222333332211 1 224589999988 34444444321
Q ss_pred ---CcEEEEEceecCCcceeeee-eccc---CCc--eeEEEEeecCCCcEEEEeecCC
Q 038537 155 ---GSVKIWRRVYRENSHTLTMT-LKFQ---QSS--VNALALSSFFDNYFLYSGSSDG 203 (358)
Q Consensus 155 ---g~i~~wd~~~~~~~~~~~~~-~~~~---~~~--i~~~~~~~~~~~~~l~~~~~dg 203 (358)
....||.-..+....+.... .... ... ...+++.|. +...++++...+
T Consensus 99 ~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~-~~~~v~a~~~~~ 155 (763)
T 3a0f_A 99 QWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPH-WTDELWFGSRTQ 155 (763)
T ss_dssp TTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTT-STTCEEEECSSS
T ss_pred cCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCC-CCCEEEEEeCCC
Confidence 12445554444444433321 1100 111 146888873 234444454443
Done!