BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038538
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr,
Minimized Mean Structure
pdb|3GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, 46
Structures
Length = 70
Score = 72.8 bits (177), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/58 (58%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 65 YRGVRMRSWGKWVSEIREPRKK-SRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFP 121
YRGVR R WGK+ +EIR+P K +R+WLGTF T E AA A+D AA ++G A+LNFP
Sbjct: 6 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63
>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding
Domain Of Aterf1 And Gcc-Box Dna, Minimized Average
Structure
Length = 63
Score = 72.4 bits (176), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/58 (58%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 65 YRGVRMRSWGKWVSEIREPRKK-SRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFP 121
YRGVR R WGK+ +EIR+P K +R+WLGTF T E AA A+D AA ++G A+LNFP
Sbjct: 3 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
>pdb|3KHJ|A Chain A, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|B Chain B, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|C Chain C, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|D Chain D, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|E Chain E, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|F Chain F, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|G Chain G, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
pdb|3KHJ|H Chain H, C. Parvum Inosine Monophosphate Dehydrogenase Bound By
Inhibitor C64
Length = 361
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 117 VLNFPELVEVLPRPVSLLPRDIQTAATKAASMIIDPSSSTCDEVSAQPQQDEQAELGEI 175
+L P EVLPR VSL +T TK S+ I SS D V+ A LG I
Sbjct: 18 ILLVPNYSEVLPREVSL-----ETKLTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGI 71
>pdb|3FFS|A Chain A, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|B Chain B, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|C Chain C, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
pdb|3FFS|D Chain D, The Crystal Structure Of Cryptosporidium Parvum
Inosine-5'- Monophosphate Dehydrogenase
Length = 400
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 117 VLNFPELVEVLPRPVSLLPRDIQTAATKAASMIIDPSSSTCDEVSAQPQQDEQAELGEI 175
+L P EVLPR VSL +T TK S+ I SS D V+ A LG I
Sbjct: 15 ILLVPNYSEVLPREVSL-----ETKLTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGI 68
>pdb|2NVO|A Chain A, Crystal Structure Of Deinococcus Radiodurans Ro (Rsr)
Protein
Length = 535
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 96 TPEMAARAHDVAALSIKGDSAVLNFPELVEVLPRPVSLLPRD-IQTAATKAASM 148
TP MAA A + AL + D+ + F E RP+ + PRD +++A KA S+
Sbjct: 387 TPNMAAAAMSLIALRTEPDALTMGFAEQF----RPLGITPRDTLESAMQKAQSV 436
>pdb|3DI4|A Chain A, Crystal Structure Of A Duf1989 Family Protein (spo0365)
From Silicibacter Pomeroyi Dss-3 At 1.60 A Resolution
pdb|3DI4|B Chain B, Crystal Structure Of A Duf1989 Family Protein (spo0365)
From Silicibacter Pomeroyi Dss-3 At 1.60 A Resolution
Length = 286
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 117 VLNFPELVEVLPRPVSLLPRDIQTAATKAASMIIDPSSSTCDEVSAQPQQDEQAELGEIV 176
V+ +P + LPRP L R + +A K +++ P C EV A G+
Sbjct: 22 VICYPN--DSLPRPDLALYRAARASARKTGEVLVPPREGRCFEVKA----------GQFF 69
Query: 177 QLPNIEG 183
++ ++EG
Sbjct: 70 RISSVEG 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,793,049
Number of Sequences: 62578
Number of extensions: 209418
Number of successful extensions: 475
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 9
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)