Query 038538
Match_columns 243
No_of_seqs 280 out of 1345
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 21:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 4.3E-26 1.5E-30 165.4 6.2 60 64-123 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 89.5 0.21 7.3E-06 37.2 2.8 28 60-89 3-31 (77)
3 3jtz_A Integrase; four strande 82.3 2.9 0.0001 31.0 5.8 44 68-111 28-75 (88)
4 1u3e_M HNH homing endonuclease 80.7 0.31 1E-05 40.0 -0.1 39 65-106 109-147 (174)
5 3ju0_A Phage integrase; four s 72.0 7 0.00024 30.1 5.5 44 68-111 28-75 (108)
6 1z1b_A Integrase; protein-DNA 69.8 4.1 0.00014 34.9 4.1 41 67-111 15-55 (356)
7 1x60_A Sporulation-specific N- 39.4 18 0.00061 25.1 2.5 24 85-108 44-67 (79)
8 1uta_A FTSN, MSGA, cell divisi 34.2 37 0.0012 23.8 3.4 32 77-108 36-67 (81)
9 2ftc_I Mitochondrial ribosomal 32.9 62 0.0021 25.2 4.9 37 75-113 79-115 (118)
10 3eik_A Tata-box-binding protei 21.9 1.1E+02 0.0039 26.3 4.9 48 63-113 75-123 (218)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.92 E-value=4.3e-26 Score=165.36 Aligned_cols=60 Identities=57% Similarity=0.971 Sum_probs=57.4
Q ss_pred ceeEeEECCCCcEEEEEeeCCC-CeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 038538 64 VYRGVRMRSWGKWVSEIREPRK-KSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPEL 123 (243)
Q Consensus 64 ~yRGVr~r~~GKW~AeIr~~~~-kkri~LGtF~T~EeAArAYD~Aa~~l~G~~a~lNFp~~ 123 (243)
+||||++|++|||+|+|++|.+ |++||||||+|+||||+|||.|+++++|..+++|||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999999999999999975 79999999999999999999999999999999999986
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=89.54 E-value=0.21 Score=37.22 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=21.7
Q ss_pred CCCCceeEeEEC-CCCcEEEEEeeCCCCeEE
Q 038538 60 TKHPVYRGVRMR-SWGKWVSEIREPRKKSRI 89 (243)
Q Consensus 60 ~~~s~yRGVr~r-~~GKW~AeIr~~~~kkri 89 (243)
..+|+|+||.+. +.+.|+|.-.+ +|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence 467899999766 77999999998 45443
No 3
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=82.34 E-value=2.9 Score=31.04 Aligned_cols=44 Identities=23% Similarity=0.342 Sum_probs=32.5
Q ss_pred eEECCCC--cEEEEEeeCCCCeEEeecCCC--CHHHHHHHHHHHHHHh
Q 038538 68 VRMRSWG--KWVSEIREPRKKSRIWLGTFR--TPEMAARAHDVAALSI 111 (243)
Q Consensus 68 Vr~r~~G--KW~AeIr~~~~kkri~LGtF~--T~EeAArAYD~Aa~~l 111 (243)
|+.+..| .|+-+.+..++.+++-||.|+ |.++|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4555544 499999987677788999998 4888887777665554
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=80.71 E-value=0.31 Score=40.04 Aligned_cols=39 Identities=5% Similarity=-0.056 Sum_probs=29.2
Q ss_pred eeEeEECCCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHH
Q 038538 65 YRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDV 106 (243)
Q Consensus 65 yRGVr~r~~GKW~AeIr~~~~kkri~LGtF~T~EeAArAYD~ 106 (243)
++||.....++|.+.|.. . +.++||.|+|.+|||++|..
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv 147 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL 147 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence 456643334668899988 3 46789999999999999653
No 5
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=71.97 E-value=7 Score=30.11 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=31.8
Q ss_pred eEECCCC--cEEEEEeeCCCCeEEeecCCCC--HHHHHHHHHHHHHHh
Q 038538 68 VRMRSWG--KWVSEIREPRKKSRIWLGTFRT--PEMAARAHDVAALSI 111 (243)
Q Consensus 68 Vr~r~~G--KW~AeIr~~~~kkri~LGtF~T--~EeAArAYD~Aa~~l 111 (243)
|+....| .|+-+.+..++.+++-||.|+. ..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4555555 4999999866667888999984 778777766655544
No 6
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=69.82 E-value=4.1 Score=34.92 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=29.2
Q ss_pred EeEECCCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHh
Q 038538 67 GVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSI 111 (243)
Q Consensus 67 GVr~r~~GKW~AeIr~~~~kkri~LGtF~T~EeAArAYD~Aa~~l 111 (243)
||+.++.|.|+.+++. .|+++.+|. |..||..+...+...+
T Consensus 15 ~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 5766777899877654 777899996 8888877665544433
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=39.36 E-value=18 Score=25.14 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=19.0
Q ss_pred CCeEEeecCCCCHHHHHHHHHHHH
Q 038538 85 KKSRIWLGTFRTPEMAARAHDVAA 108 (243)
Q Consensus 85 ~kkri~LGtF~T~EeAArAYD~Aa 108 (243)
.--|+++|.|.+.++|..+.+.-.
T Consensus 44 ~~yRV~vGpf~~~~~A~~~~~~L~ 67 (79)
T 1x60_A 44 GLYKVQIGAFSSKDNADTLAARAK 67 (79)
T ss_dssp TEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHH
Confidence 335899999999999998866533
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=34.20 E-value=37 Score=23.83 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=22.6
Q ss_pred EEEEeeCCCCeEEeecCCCCHHHHHHHHHHHH
Q 038538 77 VSEIREPRKKSRIWLGTFRTPEMAARAHDVAA 108 (243)
Q Consensus 77 ~AeIr~~~~kkri~LGtF~T~EeAArAYD~Aa 108 (243)
.+.|...+.--|+.+|-|.+.++|..+.+...
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~ 67 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLK 67 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHH
Confidence 34444433446899999999999988866543
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=32.90 E-value=62 Score=25.25 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=28.9
Q ss_pred cEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHhcC
Q 038538 75 KWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKG 113 (243)
Q Consensus 75 KW~AeIr~~~~kkri~LGtF~T~EeAArAYD~Aa~~l~G 113 (243)
.|+|.|.. +.--+-++...+++.|..|...|+.+|=+
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 39999987 54444566668899999999999988743
No 10
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=21.93 E-value=1.1e+02 Score=26.33 Aligned_cols=48 Identities=19% Similarity=0.088 Sum_probs=37.2
Q ss_pred CceeEeEEC-CCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHhcC
Q 038538 63 PVYRGVRMR-SWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIKG 113 (243)
Q Consensus 63 s~yRGVr~r-~~GKW~AeIr~~~~kkri~LGtF~T~EeAArAYD~Aa~~l~G 113 (243)
.+|-||.+| ..-|-.+-|.. .||-+-.|. .++|+|..|.++.+..+..
T Consensus 75 e~Fpglv~Rl~~Pk~t~LIF~--SGKiV~TGA-kS~e~a~~A~~ki~~~L~~ 123 (218)
T 3eik_A 75 KRFAAVIMRIREPKTTALIFA--SGKMVITGA-KSEKSSRMAAQRYAKIIHK 123 (218)
T ss_dssp TTCSSEEEEETTTTEEEEECT--TSEEEEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEecCCcEEEEEEC--CCeEEEEec-CCHHHHHHHHHHHHHHHHH
Confidence 368898666 55778888877 887777776 6799999999988877753
Done!