Query 038538
Match_columns 243
No_of_seqs 280 out of 1345
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 21:05:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038538.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038538hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gcca_ d.10.1.2 (A:) GCC-box 99.9 8.1E-26 5.9E-30 162.7 5.8 60 64-123 2-62 (63)
2 d1zj8a1 d.58.36.1 (A:327-406) 29.2 65 0.0047 20.9 5.9 36 65-108 5-40 (80)
3 d1qnaa1 d.129.1.1 (A:17-115) T 29.2 69 0.0051 22.2 6.3 48 62-112 38-86 (99)
4 d1utaa_ d.58.52.1 (A:) Cell di 28.3 20 0.0015 23.4 3.0 31 77-107 32-62 (77)
5 d1mp9a1 d.129.1.1 (A:5-96) TAT 27.9 60 0.0044 22.1 5.7 48 61-111 39-87 (92)
6 d1aisa1 d.129.1.1 (A:1-92) TAT 27.4 42 0.003 23.0 4.7 49 61-112 39-88 (92)
7 d2fh1a2 d.109.1.1 (A:533-628) 23.3 62 0.0045 21.9 5.0 32 77-108 33-64 (96)
8 d1mp9a2 d.129.1.1 (A:97-197) T 22.9 70 0.0051 22.2 5.3 48 62-112 39-87 (101)
9 d1aisa2 d.129.1.1 (A:93-181) T 22.7 76 0.0055 21.5 5.3 48 62-112 39-87 (89)
10 d1qnaa2 d.129.1.1 (A:116-198) 17.6 1.1E+02 0.0078 20.3 5.1 45 61-108 29-74 (83)
No 1
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.91 E-value=8.1e-26 Score=162.67 Aligned_cols=60 Identities=55% Similarity=0.958 Sum_probs=56.0
Q ss_pred ceeEeEECCCCcEEEEEeeCC-CCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 038538 64 VYRGVRMRSWGKWVSEIREPR-KKSRIWLGTFRTPEMAARAHDVAALSIKGDSAVLNFPEL 123 (243)
Q Consensus 64 ~yRGVr~r~~GKW~AeIr~~~-~kkri~LGtF~T~EeAArAYD~Aa~~l~G~~a~lNFp~~ 123 (243)
.||||++|++|||+|+|++|. ++++||||+|+|+||||+|||+|+++++|.++.+|||..
T Consensus 2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~ 62 (63)
T d1gcca_ 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence 599999998999999999975 568999999999999999999999999999999999964
No 2
>d1zj8a1 d.58.36.1 (A:327-406) Sulfite reductase NirA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=29.17 E-value=65 Score=20.91 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=26.3
Q ss_pred eeEeEECCCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHH
Q 038538 65 YRGVRMRSWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAA 108 (243)
Q Consensus 65 yRGVr~r~~GKW~AeIr~~~~kkri~LGtF~T~EeAArAYD~Aa 108 (243)
|-||...+.|+|...|+.|.. +| |+++....-|.|.
T Consensus 5 h~Gv~~q~dG~~~vri~~p~G--~i------t~~ql~~la~ia~ 40 (80)
T d1zj8a1 5 HVGVQRLKNGLNAVGVAPIAG--RV------SGTILTAVADLMA 40 (80)
T ss_dssp CCEEEECTTSSEEEEEBCBTT--EE------EHHHHHHHHHHHH
T ss_pred cceEeeecCCcEEEEEeccCc--EE------CHHHHHHHHHHHH
Confidence 669988877999989988655 43 6777766666544
No 3
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=29.16 E-value=69 Score=22.16 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=35.5
Q ss_pred CCceeEeEEC-CCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHhc
Q 038538 62 HPVYRGVRMR-SWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIK 112 (243)
Q Consensus 62 ~s~yRGVr~r-~~GKW~AeIr~~~~kkri~LGtF~T~EeAArAYD~Aa~~l~ 112 (243)
..+|-|+.+| ..-|-.+-|.. .||-+-.|. .++|+|..|....+..++
T Consensus 38 Pe~fpgli~R~~~P~~t~lIF~--SGKivitGa-ks~~~~~~a~~~i~~~l~ 86 (99)
T d1qnaa1 38 PKRFAAVIMRIREPKTTALIFA--SGKMVCTGA-KSEDFSKMAARKYARIVQ 86 (99)
T ss_dssp TTTCSEEEEEETTTTEEEEEET--TSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeCCCcEEEEEEc--CCEEEEecc-CCHHHHHHHHHHHHHHHH
Confidence 4579999777 44466666666 787776676 688999999988777775
No 4
>d1utaa_ d.58.52.1 (A:) Cell division protein FtsN {Escherichia coli [TaxId: 562]}
Probab=28.34 E-value=20 Score=23.42 Aligned_cols=31 Identities=19% Similarity=0.182 Sum_probs=22.8
Q ss_pred EEEEeeCCCCeEEeecCCCCHHHHHHHHHHH
Q 038538 77 VSEIREPRKKSRIWLGTFRTPEMAARAHDVA 107 (243)
Q Consensus 77 ~AeIr~~~~kkri~LGtF~T~EeAArAYD~A 107 (243)
.+.|.....--|+.+|-|.+.++|..+.+..
T Consensus 32 ~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L 62 (77)
T d1utaa_ 32 DSKITTNNGWNRVVIGPVKGKENADSTLNRL 62 (77)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHH
T ss_pred cceecCCCcEEEEEECCcCCHHHHHHHHHHH
Confidence 3445444455689999999999999986654
No 5
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=27.89 E-value=60 Score=22.09 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=34.2
Q ss_pred CCCceeEeEEC-CCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHh
Q 038538 61 KHPVYRGVRMR-SWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSI 111 (243)
Q Consensus 61 ~~s~yRGVr~r-~~GKW~AeIr~~~~kkri~LGtF~T~EeAArAYD~Aa~~l 111 (243)
+..+|.|+.+| ..-+-.+-|.. .||-+-.|. .+.++|..|+......+
T Consensus 39 ePe~fpgli~R~~~p~~t~lIF~--SGkivitGa-ks~~~~~~a~~~~~~~L 87 (92)
T d1mp9a1 39 DPDQFPGLIFRLESPKITSLIFK--SGKMVVTGA-KSTDELIKAVKRIIKTL 87 (92)
T ss_dssp CTTTCSSEEEEETTTTEEEEECT--TSEEEEECC-SSHHHHHHHHHHHHHHH
T ss_pred CCccCceEEEEECCCcEEEEEEc--CCEEEEEcc-CCHHHHHHHHHHHHHHH
Confidence 34578999766 44565666666 777666664 78999999998876655
No 6
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=27.41 E-value=42 Score=23.03 Aligned_cols=49 Identities=16% Similarity=0.080 Sum_probs=33.7
Q ss_pred CCCceeEeEEC-CCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHhc
Q 038538 61 KHPVYRGVRMR-SWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIK 112 (243)
Q Consensus 61 ~~s~yRGVr~r-~~GKW~AeIr~~~~kkri~LGtF~T~EeAArAYD~Aa~~l~ 112 (243)
+..+|.|+++| ..-+-..-|.. .||-+-.|. .+.|+|.+|+......++
T Consensus 39 ePe~fpgl~~R~~~p~~~~lIF~--sGkivitGa-kS~~~~~~a~~~i~~~l~ 88 (92)
T d1aisa1 39 NPEEFPGIICHLDDPKVALLIFS--SGKLVVTGA-KSVQDIERAVAKLAQKLK 88 (92)
T ss_dssp CTTTCSSEEEECSSSCCEEEECT--TSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred CcccCCeEEEEeCCCcEEEEEEC--CCEEEEEcc-CCHHHHHHHHHHHHHHHH
Confidence 34579999777 43454445555 777665554 789999999988766553
No 7
>d2fh1a2 d.109.1.1 (A:533-628) Gelsolin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.26 E-value=62 Score=21.93 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=26.5
Q ss_pred EEEEeeCCCCeEEeecCCCCHHHHHHHHHHHH
Q 038538 77 VSEIREPRKKSRIWLGTFRTPEMAARAHDVAA 108 (243)
Q Consensus 77 ~AeIr~~~~kkri~LGtF~T~EeAArAYD~Aa 108 (243)
-+.|-+..++-.||.|...+.+|-..|...|.
T Consensus 33 d~fILd~~~~iyvW~G~~s~~~er~~a~~~a~ 64 (96)
T d2fh1a2 33 DAFVLKTPSAAYLWVGTGASEAEKTGAQELLR 64 (96)
T ss_dssp SEEEEECSSCEEEEECTTCCHHHHHHHHHHHH
T ss_pred CeEEEECCCEEEEEECCCCCHHHHHHHHHHHH
Confidence 36677766778899999999999999988764
No 8
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=22.93 E-value=70 Score=22.19 Aligned_cols=48 Identities=13% Similarity=0.061 Sum_probs=34.6
Q ss_pred CCceeEeEEC-CCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHhc
Q 038538 62 HPVYRGVRMR-SWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIK 112 (243)
Q Consensus 62 ~s~yRGVr~r-~~GKW~AeIr~~~~kkri~LGtF~T~EeAArAYD~Aa~~l~ 112 (243)
...|.|+.+| ..-|-.+-|.. .||-+-.|. .+.+++.+|+....-.+.
T Consensus 39 Pe~fpgli~R~~~pk~t~lIF~--SGKivitGa-ks~~~~~~a~~~i~~~L~ 87 (101)
T d1mp9a2 39 PEQFPGLIYRMDEPRVVLLIFS--SGKMVITGA-KREDEVHKAVKKIFDKLV 87 (101)
T ss_dssp TTTCSSEEEEETTTTEEEEECT--TSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEEecCCcEEEEEEc--CCEEEEEcc-CCHHHHHHHHHHHHHHHH
Confidence 4568999776 44566666666 777666665 789999999988765553
No 9
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=22.74 E-value=76 Score=21.47 Aligned_cols=48 Identities=17% Similarity=0.051 Sum_probs=34.1
Q ss_pred CCceeEeEEC-CCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHHHHhc
Q 038538 62 HPVYRGVRMR-SWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAALSIK 112 (243)
Q Consensus 62 ~s~yRGVr~r-~~GKW~AeIr~~~~kkri~LGtF~T~EeAArAYD~Aa~~l~ 112 (243)
...|.||.+| ..-+=.+-|.. .||-+-.|. .+.++|.+|+......|.
T Consensus 39 Pe~fpgli~R~~~p~~t~lIF~--SGKivitGa-ks~~~~~~a~~~i~~~L~ 87 (89)
T d1aisa2 39 PEQFPGVIYRVKEPKSVILLFS--SGKIVCSGA-KSEADAWEAVRKLLRELD 87 (89)
T ss_dssp TTTCSSEEEEETTTTEEEEECT--TSEEEEEEE-SSHHHHHHHHHHHHHHHT
T ss_pred cccCceEEEEEcCCcEEEEEEc--CCEEEEEcc-CCHHHHHHHHHHHHHHHh
Confidence 4478999776 43455555555 888777776 789999999887765553
No 10
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=17.58 E-value=1.1e+02 Score=20.28 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=32.6
Q ss_pred CCCceeEeEEC-CCCcEEEEEeeCCCCeEEeecCCCCHHHHHHHHHHHH
Q 038538 61 KHPVYRGVRMR-SWGKWVSEIREPRKKSRIWLGTFRTPEMAARAHDVAA 108 (243)
Q Consensus 61 ~~s~yRGVr~r-~~GKW~AeIr~~~~kkri~LGtF~T~EeAArAYD~Aa 108 (243)
+...|.|+.+| ..-|=.+-|.. .||-+-.|. .+.|++..|+..-.
T Consensus 29 ePe~fpgl~~R~~~pk~~~lIF~--SGkivitGa-ks~~~~~~a~~~i~ 74 (83)
T d1qnaa2 29 EPELFPGLIYRMKVPKIVLLIFV--SGKIVITGA-KMRDETYKAFENIY 74 (83)
T ss_dssp CTTTCSSEEEEETTTTEEEEECT--TSEEEEEEE-SSHHHHHHHHHHHH
T ss_pred ChhhCCeEEEEECCCCeEEEEEc--CCEEEEECC-CCHHHHHHHHHHHH
Confidence 34579999766 44566777777 777776776 78999999887643
Done!