Query 038539
Match_columns 181
No_of_seqs 151 out of 1079
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 12:07:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02461 Probable pyruvate kin 100.0 1E-46 2.2E-51 337.2 20.4 181 1-181 331-511 (511)
2 PLN02765 pyruvate kinase 100.0 5.4E-45 1.2E-49 326.3 20.0 181 1-181 344-525 (526)
3 PTZ00066 pyruvate kinase; Prov 100.0 5.8E-44 1.3E-48 319.2 19.2 161 1-180 347-512 (513)
4 PTZ00300 pyruvate kinase; Prov 100.0 6.9E-44 1.5E-48 315.9 19.1 166 1-180 284-453 (454)
5 PLN02762 pyruvate kinase compl 100.0 3.8E-43 8.2E-48 314.0 18.7 161 1-180 342-508 (509)
6 PRK06247 pyruvate kinase; Prov 100.0 1.3E-42 2.9E-47 308.7 19.3 160 1-181 307-471 (476)
7 PRK09206 pyruvate kinase; Prov 100.0 1.9E-42 4.1E-47 307.7 18.6 157 1-180 310-470 (470)
8 PRK06354 pyruvate kinase; Prov 100.0 5.9E-42 1.3E-46 311.9 18.8 158 1-180 316-478 (590)
9 cd00288 Pyruvate_Kinase Pyruva 100.0 1.5E-41 3.2E-46 303.3 19.0 166 1-180 311-480 (480)
10 COG0469 PykF Pyruvate kinase [ 100.0 3.6E-40 7.7E-45 292.3 18.4 160 1-180 313-477 (477)
11 TIGR01064 pyruv_kin pyruvate k 100.0 2.1E-39 4.6E-44 289.8 18.1 159 1-177 309-473 (473)
12 PRK05826 pyruvate kinase; Prov 100.0 2E-39 4.4E-44 288.7 16.9 147 1-169 311-458 (465)
13 PLN02623 pyruvate kinase 100.0 6.5E-39 1.4E-43 289.4 18.9 158 1-180 415-579 (581)
14 KOG2323 Pyruvate kinase [Carbo 100.0 8E-39 1.7E-43 282.9 15.5 167 1-180 331-501 (501)
15 PF02887 PK_C: Pyruvate kinase 100.0 7.6E-34 1.6E-38 210.5 14.4 112 50-179 1-117 (117)
16 COG1751 Uncharacterized conser 89.7 1.1 2.4E-05 35.0 5.7 45 50-94 12-57 (186)
17 PF00582 Usp: Universal stress 78.7 6.7 0.00014 27.4 5.4 42 52-94 89-139 (140)
18 PRK15005 universal stress prot 77.5 7.4 0.00016 28.3 5.5 40 54-94 96-143 (144)
19 cd01987 USP_OKCHK USP domain i 70.7 14 0.00029 26.2 5.3 43 52-94 72-123 (124)
20 PRK14045 1-aminocyclopropane-1 69.2 63 0.0014 27.7 10.0 40 55-94 169-217 (329)
21 PRK15456 universal stress prot 66.1 18 0.00038 26.4 5.3 39 55-94 95-141 (142)
22 COG0541 Ffh Signal recognition 64.9 20 0.00044 32.5 6.2 66 73-156 115-183 (451)
23 PRK04885 ppnK inorganic polyph 60.8 10 0.00022 31.9 3.3 32 63-94 145-180 (265)
24 PRK15118 universal stress glob 60.0 32 0.00068 25.0 5.7 40 54-94 92-137 (144)
25 cd05017 SIS_PGI_PMI_1 The memb 57.3 23 0.00051 25.4 4.5 52 65-131 43-99 (119)
26 PRK10886 DnaA initiator-associ 56.5 1E+02 0.0022 24.6 11.2 94 51-169 25-145 (196)
27 PRK13509 transcriptional repre 56.1 52 0.0011 27.2 6.8 63 50-129 80-142 (251)
28 KOG2178 Predicted sugar kinase 54.3 14 0.00031 32.9 3.3 32 63-94 283-318 (409)
29 PF08541 ACP_syn_III_C: 3-Oxoa 53.8 34 0.00074 23.1 4.6 28 145-172 54-82 (90)
30 PRK10411 DNA-binding transcrip 53.5 62 0.0013 26.5 6.9 64 50-130 80-143 (240)
31 cd00578 L-fuc_L-ara-isomerases 53.4 80 0.0017 28.2 8.1 80 8-94 13-94 (452)
32 cd00640 Trp-synth-beta_II Tryp 52.9 1.2E+02 0.0026 24.4 10.3 43 52-94 137-186 (244)
33 COG0279 GmhA Phosphoheptose is 52.1 1.1E+02 0.0024 24.3 7.6 45 50-94 24-79 (176)
34 cd06259 YdcF-like YdcF-like. Y 51.9 94 0.002 22.8 8.6 51 109-168 51-103 (150)
35 KOG0925 mRNA splicing factor A 50.7 43 0.00094 31.2 5.8 72 81-169 184-263 (699)
36 PLN02929 NADH kinase 49.6 14 0.00031 31.8 2.5 29 63-91 193-221 (301)
37 TIGR00035 asp_race aspartate r 47.9 1.5E+02 0.0032 23.9 9.1 84 9-94 9-104 (229)
38 PF05991 NYN_YacP: YacP-like N 47.1 38 0.00082 26.3 4.4 52 66-131 66-123 (166)
39 PF00455 DeoRC: DeoR C termina 44.5 81 0.0018 24.1 5.9 20 75-94 27-47 (161)
40 PRK01231 ppnK inorganic polyph 44.1 28 0.0006 29.7 3.4 32 63-94 172-207 (295)
41 PRK10100 DNA-binding transcrip 44.1 72 0.0016 25.7 5.8 53 66-130 53-111 (216)
42 cd01989 STK_N The N-terminal d 43.7 83 0.0018 22.7 5.7 43 52-94 90-143 (146)
43 COG0061 nadF NAD kinase [Coenz 43.6 26 0.00056 29.6 3.2 32 63-94 163-198 (281)
44 PRK09982 universal stress prot 43.2 85 0.0018 22.9 5.7 42 53-94 91-137 (142)
45 PRK05928 hemD uroporphyrinogen 42.8 1.6E+02 0.0035 23.2 7.6 77 63-169 50-134 (249)
46 PF02698 DUF218: DUF218 domain 42.3 95 0.0021 22.9 5.9 50 110-168 55-106 (155)
47 PRK13936 phosphoheptose isomer 42.3 1.7E+02 0.0037 23.1 9.1 44 51-94 27-81 (197)
48 cd00293 USP_Like Usp: Universa 42.2 67 0.0015 21.8 4.8 39 54-93 82-129 (130)
49 PRK11175 universal stress prot 41.6 76 0.0017 26.1 5.7 41 53-94 95-144 (305)
50 PRK00561 ppnK inorganic polyph 41.5 31 0.00066 29.0 3.3 32 63-94 134-169 (259)
51 PRK10200 putative racemase; Pr 41.4 1.9E+02 0.0042 23.4 8.7 85 9-94 9-104 (230)
52 PRK02645 ppnK inorganic polyph 41.3 29 0.00064 29.6 3.2 32 63-94 176-211 (305)
53 cd01988 Na_H_Antiporter_C The 41.2 97 0.0021 21.5 5.6 41 53-94 82-131 (132)
54 PRK02649 ppnK inorganic polyph 41.2 33 0.00071 29.5 3.5 32 63-94 178-213 (305)
55 COG1794 RacX Aspartate racemas 41.2 1.3E+02 0.0029 24.9 6.8 84 9-94 9-104 (230)
56 TIGR01275 ACC_deam_rel pyridox 41.1 86 0.0019 26.4 6.0 39 56-94 156-202 (311)
57 PRK03501 ppnK inorganic polyph 41.1 35 0.00076 28.7 3.6 32 63-94 146-181 (264)
58 cd08181 PPD-like 1,3-propanedi 40.5 90 0.002 27.0 6.2 49 48-100 66-134 (357)
59 PRK12281 rplX 50S ribosomal pr 40.4 30 0.00065 23.5 2.5 14 156-169 6-19 (76)
60 PRK08674 bifunctional phosphog 39.3 1.5E+02 0.0032 25.4 7.3 50 65-129 78-132 (337)
61 PRK10681 DNA-binding transcrip 39.3 1.1E+02 0.0024 25.2 6.2 63 50-129 79-142 (252)
62 PRK03910 D-cysteine desulfhydr 39.1 54 0.0012 28.0 4.5 39 56-94 169-216 (331)
63 PLN02935 Bifunctional NADH kin 38.5 39 0.00084 31.3 3.7 32 63-94 377-412 (508)
64 PF12847 Methyltransf_18: Meth 37.8 55 0.0012 22.4 3.7 28 67-94 4-31 (112)
65 PRK04539 ppnK inorganic polyph 37.8 40 0.00087 28.8 3.5 32 63-94 178-213 (296)
66 TIGR03595 Obg_CgtA_exten Obg f 37.6 42 0.00091 22.2 2.9 15 150-165 48-62 (69)
67 TIGR03844 cysteate_syn cysteat 37.5 3E+02 0.0064 24.5 9.6 88 49-157 100-190 (398)
68 cd05014 SIS_Kpsf KpsF-like pro 37.4 46 0.00099 23.7 3.3 29 65-94 47-80 (128)
69 CHL00141 rpl24 ribosomal prote 37.0 37 0.00081 23.5 2.6 14 156-169 8-21 (83)
70 PRK03708 ppnK inorganic polyph 36.7 50 0.0011 27.9 3.9 32 63-94 162-197 (277)
71 PRK14077 pnk inorganic polypho 36.5 22 0.00048 30.2 1.7 32 63-94 174-209 (287)
72 PRK10717 cysteine synthase A; 35.7 1.4E+02 0.003 25.5 6.5 40 55-94 164-209 (330)
73 PRK14729 miaA tRNA delta(2)-is 35.6 1E+02 0.0022 26.4 5.7 84 68-169 8-101 (300)
74 TIGR01139 cysK cysteine syntha 35.5 2.6E+02 0.0056 23.3 8.1 40 55-94 151-196 (298)
75 PF00072 Response_reg: Respons 35.3 1.4E+02 0.003 20.0 7.6 62 57-130 35-101 (112)
76 KOG2618 Uncharacterized conser 35.0 54 0.0012 28.6 3.7 51 119-169 80-130 (366)
77 COG0503 Apt Adenine/guanine ph 35.0 57 0.0012 25.6 3.7 38 57-94 45-82 (179)
78 PF04009 DUF356: Protein of un 34.7 60 0.0013 23.7 3.4 51 64-127 55-106 (107)
79 PRK10840 transcriptional regul 34.5 2.2E+02 0.0047 22.0 9.0 59 60-130 44-110 (216)
80 PRK11475 DNA-binding transcrip 34.5 1.6E+02 0.0035 23.4 6.4 44 75-130 54-99 (207)
81 cd05015 SIS_PGI_1 Phosphogluco 34.2 1.4E+02 0.003 22.7 5.7 30 65-94 73-115 (158)
82 cd01561 CBS_like CBS_like: Thi 34.1 2.5E+02 0.0054 23.3 7.7 40 55-94 148-193 (291)
83 PRK01911 ppnK inorganic polyph 34.0 29 0.00063 29.6 2.0 32 63-94 173-208 (292)
84 PRK05752 uroporphyrinogen-III 34.0 1.3E+02 0.0028 24.6 5.8 37 65-118 182-225 (255)
85 PRK02155 ppnK NAD(+)/NADH kina 33.7 47 0.001 28.3 3.2 32 63-94 173-208 (291)
86 cd08180 PDD 1,3-propanediol de 33.5 1.4E+02 0.003 25.5 6.2 47 49-99 62-118 (332)
87 PF09652 Cas_VVA1548: Putative 33.3 45 0.00098 23.7 2.6 20 147-166 9-41 (93)
88 TIGR01444 fkbM_fam methyltrans 33.3 68 0.0015 23.2 3.7 34 72-118 6-39 (143)
89 PRK08197 threonine synthase; V 33.2 3.4E+02 0.0073 23.8 10.4 44 50-94 111-156 (394)
90 PF02602 HEM4: Uroporphyrinoge 32.8 65 0.0014 25.4 3.8 55 87-169 72-126 (231)
91 TIGR00174 miaA tRNA isopenteny 32.7 1E+02 0.0022 26.3 5.1 84 68-169 3-97 (287)
92 cd05008 SIS_GlmS_GlmD_1 SIS (S 32.7 54 0.0012 23.2 3.1 29 65-94 46-79 (126)
93 smart00739 KOW KOW (Kyprides, 32.7 76 0.0016 16.2 3.8 13 157-169 2-14 (28)
94 cd05005 SIS_PHI Hexulose-6-pho 32.0 58 0.0013 25.0 3.3 29 65-94 75-108 (179)
95 PLN03013 cysteine synthase 31.6 2.4E+02 0.0052 25.5 7.5 39 56-94 269-313 (429)
96 PRK05928 hemD uroporphyrinogen 31.3 1.4E+02 0.0031 23.4 5.6 61 64-148 176-245 (249)
97 PF01380 SIS: SIS domain SIS d 31.2 53 0.0011 23.2 2.8 30 65-94 53-86 (131)
98 PF02887 PK_C: Pyruvate kinase 31.2 65 0.0014 23.1 3.2 40 55-94 28-67 (117)
99 TIGR01274 ACC_deam 1-aminocycl 31.1 3.4E+02 0.0073 23.2 11.9 39 56-94 174-221 (337)
100 PRK02231 ppnK inorganic polyph 31.0 41 0.0009 28.4 2.5 31 64-94 154-188 (272)
101 TIGR03127 RuMP_HxlB 6-phospho 30.9 63 0.0014 24.7 3.3 29 65-94 72-105 (179)
102 cd05710 SIS_1 A subgroup of th 30.7 58 0.0013 23.4 2.9 29 65-94 47-80 (120)
103 TIGR01136 cysKM cysteine synth 30.7 2.9E+02 0.0062 23.1 7.6 41 54-94 150-196 (299)
104 PRK03372 ppnK inorganic polyph 30.6 42 0.0009 28.9 2.4 32 63-94 182-217 (306)
105 PF09269 DUF1967: Domain of un 30.6 48 0.001 21.9 2.3 16 149-165 47-62 (69)
106 PRK08811 uroporphyrinogen-III 30.4 2.5E+02 0.0054 23.3 7.1 74 65-169 69-147 (266)
107 TIGR00441 gmhA phosphoheptose 30.3 58 0.0013 24.6 3.0 29 65-94 79-112 (154)
108 PRK08638 threonine dehydratase 30.0 3E+02 0.0065 23.6 7.7 74 11-94 130-208 (333)
109 COG0794 GutQ Predicted sugar p 30.0 25 0.00055 28.5 0.9 20 154-173 81-100 (202)
110 PF02602 HEM4: Uroporphyrinoge 29.5 1.9E+02 0.0042 22.6 6.1 59 54-130 157-222 (231)
111 PRK05752 uroporphyrinogen-III 29.5 2.2E+02 0.0047 23.2 6.5 80 65-169 55-139 (255)
112 PRK11175 universal stress prot 29.2 1.3E+02 0.0028 24.7 5.2 40 54-94 250-298 (305)
113 PF00532 Peripla_BP_1: Peripla 29.2 3.2E+02 0.007 22.4 8.1 39 56-94 47-85 (279)
114 PRK01185 ppnK inorganic polyph 29.1 45 0.00098 28.1 2.4 32 63-94 155-190 (271)
115 PRK09189 uroporphyrinogen-III 29.0 3E+02 0.0065 22.0 7.5 44 62-122 167-219 (240)
116 PRK04761 ppnK inorganic polyph 28.9 50 0.0011 27.5 2.6 33 62-94 130-166 (246)
117 PRK14075 pnk inorganic polypho 28.8 54 0.0012 27.3 2.8 32 63-94 143-178 (256)
118 PRK03378 ppnK inorganic polyph 28.7 74 0.0016 27.1 3.6 32 63-94 173-208 (292)
119 TIGR02620 cas_VVA1548 putative 28.4 59 0.0013 23.1 2.5 20 147-166 9-41 (93)
120 PF11017 DUF2855: Protein of u 28.3 1.1E+02 0.0024 26.5 4.7 53 62-125 132-188 (314)
121 COG1844 Uncharacterized protei 27.7 53 0.0012 24.4 2.2 68 49-129 40-109 (125)
122 PRK06816 3-oxoacyl-(acyl carri 27.7 1.4E+02 0.0031 25.9 5.4 26 144-169 339-364 (378)
123 cd05013 SIS_RpiR RpiR-like pro 27.5 94 0.002 21.8 3.6 29 65-94 60-93 (139)
124 PRK10046 dpiA two-component re 27.4 3E+02 0.0066 21.5 8.8 62 57-130 42-108 (225)
125 PF01634 HisG: ATP phosphoribo 27.2 43 0.00094 26.1 1.8 27 55-81 95-122 (163)
126 PRK10116 universal stress prot 27.2 2.1E+02 0.0045 20.4 5.5 41 54-94 91-137 (142)
127 TIGR01138 cysM cysteine syntha 27.1 3.7E+02 0.0081 22.4 8.4 40 55-94 151-196 (290)
128 PRK09802 DNA-binding transcrip 27.0 2.9E+02 0.0062 23.0 6.9 63 50-129 93-156 (269)
129 PRK09750 hypothetical protein; 27.0 24 0.00051 23.1 0.2 10 1-10 36-45 (64)
130 PRK06260 threonine synthase; V 26.6 4.4E+02 0.0096 23.1 8.9 44 50-94 99-144 (397)
131 PLN02727 NAD kinase 26.2 74 0.0016 31.8 3.5 32 63-94 860-895 (986)
132 PF03437 BtpA: BtpA family; I 26.2 3.9E+02 0.0085 22.4 7.8 63 53-126 160-227 (254)
133 PRK08287 cobalt-precorrin-6Y C 26.1 2.5E+02 0.0053 21.5 6.0 30 65-94 32-61 (187)
134 cd08194 Fe-ADH6 Iron-containin 26.0 2.2E+02 0.0048 24.8 6.2 48 49-100 64-132 (375)
135 PF01513 NAD_kinase: ATP-NAD k 26.0 43 0.00093 28.1 1.7 32 63-94 188-223 (285)
136 PRK12390 1-aminocyclopropane-1 26.0 4.2E+02 0.009 22.6 11.1 38 57-94 176-222 (337)
137 PRK10434 srlR DNA-bindng trans 25.9 1.7E+02 0.0037 24.1 5.3 53 50-119 78-131 (256)
138 COG2984 ABC-type uncharacteriz 25.5 2.7E+02 0.0059 24.3 6.5 90 56-156 76-189 (322)
139 PRK06381 threonine synthase; V 25.2 4.1E+02 0.0089 22.3 9.2 45 49-94 46-92 (319)
140 COG0332 FabH 3-oxoacyl-[acyl-c 25.0 93 0.002 27.0 3.6 24 144-167 285-308 (323)
141 PF01745 IPT: Isopentenyl tran 24.7 3.1E+02 0.0068 22.8 6.4 28 66-94 3-32 (233)
142 cd07411 MPP_SoxB_N Thermus the 24.7 2.4E+02 0.0051 23.1 5.9 45 50-94 168-213 (264)
143 PRK00091 miaA tRNA delta(2)-is 24.7 1.9E+02 0.0041 24.8 5.4 26 68-94 8-35 (307)
144 PRK07239 bifunctional uroporph 24.4 3.5E+02 0.0075 23.4 7.2 52 87-166 97-148 (381)
145 PF04977 DivIC: Septum formati 23.7 1.1E+02 0.0023 19.9 3.0 19 148-166 58-77 (80)
146 PRK11761 cysM cysteine synthas 23.6 1.6E+02 0.0034 24.8 4.7 38 57-94 157-200 (296)
147 COG0031 CysK Cysteine synthase 23.5 4.8E+02 0.01 22.5 10.7 39 56-94 158-202 (300)
148 PRK11557 putative DNA-binding 23.5 1.1E+02 0.0024 25.1 3.7 29 65-94 175-208 (278)
149 PRK10906 DNA-binding transcrip 23.3 3.1E+02 0.0067 22.6 6.4 63 50-129 78-141 (252)
150 cd02812 PcrB_like PcrB_like pr 23.0 4.2E+02 0.0091 21.6 7.6 36 59-94 19-60 (219)
151 PF06506 PrpR_N: Propionate ca 22.9 1.5E+02 0.0032 22.9 4.1 28 63-94 32-59 (176)
152 PRK12483 threonine dehydratase 22.6 6.2E+02 0.014 23.4 8.8 41 54-94 173-219 (521)
153 PLN02970 serine racemase 22.6 4.8E+02 0.011 22.2 8.2 40 55-94 164-208 (328)
154 cd08187 BDH Butanol dehydrogen 22.6 2.7E+02 0.0058 24.3 6.1 47 48-98 69-136 (382)
155 COG2164 Uncharacterized conser 22.5 1.2E+02 0.0025 22.3 3.1 48 115-166 77-124 (126)
156 TIGR00686 phnA alkylphosphonat 22.5 94 0.002 22.8 2.7 21 156-176 50-73 (109)
157 CHL00203 fabH 3-oxoacyl-acyl-c 22.3 2.3E+02 0.0049 23.9 5.5 28 145-172 289-317 (326)
158 PRK00973 glucose-6-phosphate i 22.1 1.1E+02 0.0024 27.8 3.6 54 65-130 132-197 (446)
159 PF06613 KorB_C: KorB C-termin 21.9 11 0.00023 24.7 -2.1 23 67-89 8-30 (60)
160 cd08179 NADPH_BDH NADPH-depend 21.9 2.4E+02 0.0052 24.5 5.7 49 48-100 64-136 (375)
161 PF02601 Exonuc_VII_L: Exonucl 21.9 1.8E+02 0.0038 24.6 4.7 33 138-170 54-86 (319)
162 PLN02565 cysteine synthase 21.7 1.9E+02 0.0042 24.7 4.9 40 55-94 160-205 (322)
163 KOG1596 Fibrillarin and relate 21.7 1.4E+02 0.003 25.5 3.8 19 74-92 192-211 (317)
164 PRK06852 aldolase; Validated 21.2 5.4E+02 0.012 22.2 7.6 78 13-94 150-236 (304)
165 cd06167 LabA_like LabA_like pr 21.0 2.5E+02 0.0054 20.4 4.9 46 49-94 83-129 (149)
166 cd07408 MPP_SA0022_N Staphyloc 21.0 2E+02 0.0044 23.4 4.8 30 49-78 155-184 (257)
167 PRK03659 glutathione-regulated 21.0 5.6E+02 0.012 24.0 8.2 56 58-127 457-516 (601)
168 TIGR01137 cysta_beta cystathio 20.8 4.9E+02 0.011 23.0 7.5 40 55-94 158-203 (454)
169 TIGR00274 N-acetylmuramic acid 20.5 4.1E+02 0.0088 22.5 6.6 32 50-81 40-71 (291)
170 cd08176 LPO Lactadehyde:propan 20.5 3.1E+02 0.0067 23.8 6.1 48 49-100 69-137 (377)
171 COG0589 UspA Universal stress 20.3 3E+02 0.0065 19.3 5.1 36 58-94 106-150 (154)
172 cd08193 HVD 5-hydroxyvalerate 20.2 3.1E+02 0.0067 23.8 6.0 48 48-99 66-134 (376)
173 PF08241 Methyltransf_11: Meth 20.1 1.7E+02 0.0036 18.8 3.5 21 73-94 5-25 (95)
174 PRK09483 response regulator; P 20.1 3.8E+02 0.0083 20.1 8.6 57 62-130 44-105 (217)
No 1
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=1e-46 Score=337.16 Aligned_cols=181 Identities=73% Similarity=1.099 Sum_probs=157.9
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||++||+.++|...|.........+.+..+++|.+|+++|+++++++||+||.||+||+
T Consensus 331 MLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIiv~T~sG~tA~ 410 (511)
T PLN02461 331 MLSGETAAGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSPLESLASSAVRTANKVKASLIVVLTRGGTTAR 410 (511)
T ss_pred EEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhcccccccCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHH
Confidence 99999999999999999999999999997655444433211111133567999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.|||||+..|..+|+.++|+|++++++|||+|+|||+|++.+......|..+.+++++.+++++++.|++++|
T Consensus 411 ~iSk~RP~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 490 (511)
T PLN02461 411 LVAKYRPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSESTEEILEAAIEHAKKKGLCKPG 490 (511)
T ss_pred HHHhhCCCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecccccccccCCHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999777778889999999999999999999999998765322334568899999999999999999999
Q ss_pred CEEEEEeecCCCcEEEEEEeC
Q 038539 161 DSVVALHRMHIASVLKILVVN 181 (181)
Q Consensus 161 d~vvvv~g~g~tn~i~i~~v~ 181 (181)
|.||+++|.|.+|+++|++++
T Consensus 491 d~vvvv~~~g~tn~i~v~~v~ 511 (511)
T PLN02461 491 DSVVALHRIGGASVIKILTVK 511 (511)
T ss_pred CEEEEEecCCCCcEEEEEEeC
Confidence 999999999999999999875
No 2
>PLN02765 pyruvate kinase
Probab=100.00 E-value=5.4e-45 Score=326.33 Aligned_cols=181 Identities=40% Similarity=0.645 Sum_probs=153.2
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||++||+.+++...+.........+.+..+++|.+|+++|++++|++||+||.||+||+
T Consensus 344 MLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sav~~A~~l~a~aIvv~T~sG~tAr 423 (526)
T PLN02765 344 LLGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFKKTVKYVGEPMSHLESIASSAVRAAIKVKASVIIVFTSSGRAAR 423 (526)
T ss_pred EecchhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhhhhcccccCCCHHHHHHHHHHHHHhhCCCCEEEEECCCcHHHH
Confidence 99999999999999999999999999987555433322111111233457999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCC-CCccCHHHHHHHHHHHHHHcCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARA-SDEESTEETIEFALQHAMAKGLCRA 159 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~-~~~~~~~~~i~~a~~~~~~~g~~~~ 159 (181)
++|||||.+||+|+.+|..+++++.|+++++.++|||+|+|||+|++.+..... .|....+.++..++++++++|++++
T Consensus 424 ~isk~RP~~pIla~t~~~~~~~~~~~~~~~~~~aR~L~L~~GV~P~~~~~~~~~e~~~~~~~~~~~~a~~~~~~~g~~~~ 503 (526)
T PLN02765 424 LIAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIVRGLFPMLADPRHSAESTSATNESVLKVALDHGKAAGVIKS 503 (526)
T ss_pred HHHhhCCCCCEEEEecCcccccccccccCcHHHHHHhhcccCCEEEEeccccccccccccHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999997677777889999999999999999999999988653110 1112367889999999999999999
Q ss_pred CCEEEEEeecCCCcEEEEEEeC
Q 038539 160 GDSVVALHRMHIASVLKILVVN 181 (181)
Q Consensus 160 Gd~vvvv~g~g~tn~i~i~~v~ 181 (181)
||.||++++.|++|++||++++
T Consensus 504 GD~vvv~~~~g~tn~i~v~~v~ 525 (526)
T PLN02765 504 HDRVVVCQKVGDSSVVKIIELD 525 (526)
T ss_pred CCEEEEEecCCCCceEEEEEcC
Confidence 9999999988999999999874
No 3
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=5.8e-44 Score=319.23 Aligned_cols=161 Identities=39% Similarity=0.590 Sum_probs=141.8
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||++||+.++|..+|.........+.+..+++|.+|+++|+++++++||+||.||+||+
T Consensus 347 MLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~A~~l~a~aIv~~T~SG~TAr 426 (513)
T PTZ00066 347 MLSGETANGKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTPVSVQEAVARSAVETAEDINAKLIIALTETGNTAR 426 (513)
T ss_pred EecchhcCCcCHHHHHHHHHHHHHHHhhccchHHhhhhhhccccCCCchhhHHHHHHHHHHHhCCCCEEEEECCCcHHHH
Confidence 99999999999999999999999999987655433332211111122457899999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||||+ | +++.++|||+|+|||+|++.+.. .+.+++++.+++++++.|++++|
T Consensus 427 ~iSk~RP~~pIia~------t-------~~~~~~R~L~L~wGV~p~~~~~~------~~~~~~i~~a~~~~~~~g~~~~G 487 (513)
T PTZ00066 427 LISKYRPSCTILAL------S-------ASPSVVKSLSVARGVTTYVVNSF------QGTDVVIRNAIALAKERGLVESG 487 (513)
T ss_pred HHHhhCCCCCEEEE------C-------CCHHHHHHhhcccCcEEEEecCC------CCHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999 6 99999999999999999988653 67889999999999999999999
Q ss_pred CEEEEEeec-----CCCcEEEEEEe
Q 038539 161 DSVVALHRM-----HIASVLKILVV 180 (181)
Q Consensus 161 d~vvvv~g~-----g~tn~i~i~~v 180 (181)
|.||+++|+ |.+|++||+++
T Consensus 488 D~vVv~~g~~~~~~g~tn~irv~~v 512 (513)
T PTZ00066 488 DSAIAVHGVKEEVAGSSNLMKVVKI 512 (513)
T ss_pred CEEEEEeCCCCCCCCCCeEEEEEEc
Confidence 999999996 78999999986
No 4
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=6.9e-44 Score=315.85 Aligned_cols=166 Identities=37% Similarity=0.543 Sum_probs=141.5
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||++||+.+++..++.........+.+..+++|.+|+++|.++++++||+||.||+||+
T Consensus 284 MLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~ 363 (454)
T PTZ00300 284 MLSGETAKGKYPNEVVQYMARICLEAQSAVNEYVFFNSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSAR 363 (454)
T ss_pred EEechhcCCCCHHHHHHHHHHHHHHHHhhhchhhhhhhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHH
Confidence 99999999999999999999999999986543323332211112233557999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||||+ | ++++++|||+|+|||+|++.+.... ....+.++++..++++++++|++++|
T Consensus 364 ~vs~~RP~~pIia~------t-------~~~~~ar~l~l~~GV~p~~~~~~~~-~~~~~~~~~~~~a~~~~~~~g~~~~g 429 (454)
T PTZ00300 364 LVAKYRPNCPIVCV------T-------TRLQTCRQLNITQGVESVFFDAERL-GHDEGKEQRVAMGVGFAKSKGYVQSG 429 (454)
T ss_pred HHHhhCCCCCEEEE------C-------CCHHHHHHhhcccCcEEEEeccccc-cccCCHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999 6 9999999999999999998764100 01256789999999999999999999
Q ss_pred CEEEEEeec----CCCcEEEEEEe
Q 038539 161 DSVVALHRM----HIASVLKILVV 180 (181)
Q Consensus 161 d~vvvv~g~----g~tn~i~i~~v 180 (181)
|.||+++|. |+||++||+++
T Consensus 430 d~vvi~~g~~~~~g~tn~i~v~~~ 453 (454)
T PTZ00300 430 DLMVVVHADHKVKGYANQTRIILV 453 (454)
T ss_pred CEEEEEeCCCCCCCCCCEEEEEEe
Confidence 999999996 89999999987
No 5
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=3.8e-43 Score=314.02 Aligned_cols=161 Identities=25% Similarity=0.396 Sum_probs=139.4
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHH--hcC-CCCCChHHHHHHHHHHHHHhcCCcEEEEecCCCh
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIM--ETA-PMPMSPLESLASSAVRTANCIKAALILVLTRGGT 77 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~--~~~-~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ 77 (181)
|||||||.|+||+|||++|++||+++|+...+...+.... ... ..+.+..+++|.+|+++|++++|++||+||.||+
T Consensus 342 MLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~aia~sa~~~A~~l~a~aIv~~T~sG~ 421 (509)
T PLN02762 342 MLSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISEEICNSAAKMANNLGVDAIFVYTKHGH 421 (509)
T ss_pred EEcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhccccccccchHHHHHHHHHHHHhhcCCCEEEEECCCcH
Confidence 9999999999999999999999999998642211111110 100 1113567999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCC
Q 038539 78 TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLC 157 (181)
Q Consensus 78 ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~ 157 (181)
||+++|||||.+||||+ | ++++++|||+|+|||+|++.+.. .+.+++++.++++++++|++
T Consensus 422 tA~~iSk~RP~~pIia~------t-------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~~~~~~~~~g~~ 482 (509)
T PLN02762 422 MASLLSRNRPDCPIFAF------T-------DTTSVRRRLNLQWGLIPFRLDFS------DDMESNLNKTFSLLKARGMI 482 (509)
T ss_pred HHHHHHhhCCCCCEEEE------C-------CCHHHHHHhhcccCcEEEEeCCC------CCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999 6 99999999999999999987653 67899999999999999999
Q ss_pred CCCCEEEEEeec---CCCcEEEEEEe
Q 038539 158 RAGDSVVALHRM---HIASVLKILVV 180 (181)
Q Consensus 158 ~~Gd~vvvv~g~---g~tn~i~i~~v 180 (181)
++||.||+++|+ |.||+|+|+++
T Consensus 483 ~~GD~VVv~~g~~~~g~tn~i~v~~v 508 (509)
T PLN02762 483 KSGDLVIAVSDLTPSSMLQSIQVRNV 508 (509)
T ss_pred CCCCEEEEEeCCCCCCCceEEEEEEc
Confidence 999999999995 99999999986
No 6
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=1.3e-42 Score=308.67 Aligned_cols=160 Identities=29% Similarity=0.387 Sum_probs=141.2
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||+++|+.++|...+.... .....+..+++|.+|+++|+++++++||+||.||+||+
T Consensus 307 MLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~--~~~~~~~~~~ia~sa~~~A~~l~a~~Iv~~T~sG~ta~ 384 (476)
T PRK06247 307 MLSAETASGKYPVEAVRTMARIIRQVERDPTYPPLIHAQR--PQPEATKRDAISYAARDIAERLDLAALVAYTSSGDTAL 384 (476)
T ss_pred EEcchhcCCCCHHHHHHHHHHHHHHHhhccchhhhhhhcc--cccCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHH
Confidence 9999999999999999999999999998754432222111 11123567899999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||+|||+|+ | ++++++|||+|+|||+|++.+.. .+.++++..+++++++.|++++|
T Consensus 385 ~isk~RP~~pI~a~------t-------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~a~~~~~~~g~~~~G 445 (476)
T PRK06247 385 RAARERPPLPILAL------T-------PNPETARRLALTWGVHCVVVDDA------RDTDDMVRRADRIALAEGFYKRG 445 (476)
T ss_pred HHHhhCCCCCEEEE------C-------CCHHHHHHhhcccCCeeEecCCC------CCHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999 6 99999999999999999998753 67899999999999999999999
Q ss_pred CEEEEEeec-----CCCcEEEEEEeC
Q 038539 161 DSVVALHRM-----HIASVLKILVVN 181 (181)
Q Consensus 161 d~vvvv~g~-----g~tn~i~i~~v~ 181 (181)
|.||+++|. |.||++||++|+
T Consensus 446 d~vvv~~g~~~~~~g~tn~i~v~~v~ 471 (476)
T PRK06247 446 DRVVIVAGVPPGTPGSTNMLRIAYIG 471 (476)
T ss_pred CEEEEEeCCCCCCCCCCeEEEEEEeC
Confidence 999999986 789999999874
No 7
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=1.9e-42 Score=307.75 Aligned_cols=157 Identities=33% Similarity=0.486 Sum_probs=138.9
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||+++|+.+++. +..... ....+..+++|.+|+++|+++++++||+||.||+||+
T Consensus 310 MLS~ETA~G~yPveaV~~m~~I~~~~E~~~~~~--~~~~~~--~~~~~~~~~ia~sa~~~A~~l~a~aIv~~T~sG~tA~ 385 (470)
T PRK09206 310 MLSGESAKGKYPLEAVSIMATICERTDRVMNSR--LESNND--NRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSAR 385 (470)
T ss_pred EEechhcCCCCHHHHHHHHHHHHHHHHhhcchh--hhhhcc--ccCCChHHHHHHHHHHHHhcCCCCEEEEECCCcHHHH
Confidence 999999999999999999999999999865432 111111 1113567999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||||+ | +|++++|||+|+|||+|++.+.. .+.++++..++++++++|++++|
T Consensus 386 ~is~~RP~~pIia~------t-------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~a~~~~~~~g~~~~G 446 (470)
T PRK09206 386 SVRKYFPDATILAL------T-------TNEKTARQLVLSKGVVPQLVKEI------ASTDDFYRLGKELALQSGLAQKG 446 (470)
T ss_pred HHHhhCCCCCEEEE------C-------CCHHHHHHhhcccCcEEEEeCCC------CCHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999 6 99999999999999999988753 67889999999999999999999
Q ss_pred CEEEEEeec----CCCcEEEEEEe
Q 038539 161 DSVVALHRM----HIASVLKILVV 180 (181)
Q Consensus 161 d~vvvv~g~----g~tn~i~i~~v 180 (181)
|.||+++|. |.||++||+.+
T Consensus 447 d~vvv~~g~~~~~g~tn~i~v~~~ 470 (470)
T PRK09206 447 DVVVMVSGALVPSGTTNTASVHVL 470 (470)
T ss_pred CEEEEEeCCCCCCCCCeEEEEEEC
Confidence 999999995 89999999864
No 8
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=5.9e-42 Score=311.94 Aligned_cols=158 Identities=39% Similarity=0.521 Sum_probs=141.4
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||+++|+.++|..++..... ...+..+++|.+|+++|.++++++||+||.||+||+
T Consensus 316 MLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~---~~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~ta~ 392 (590)
T PRK06354 316 MLSNETAAGDYPVEAVQTMATIAVRIEKDLPYRDILSKRPE---FTTTITNAISQAVSHIALQLDAAAIVTLTKSGATAR 392 (590)
T ss_pred EecccccCCCCHHHHHHHHHHHHHHHHhccchhhhhhhccc---cCCCHHHHHHHHHHHHHhhcCCCEEEEECCChHHHH
Confidence 99999999999999999999999999987655433322111 123567899999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||+|+ | +++.++|||+|+|||+|++.+.. .+.+++++.+++++++.|++++|
T Consensus 393 ~vsk~Rp~~pI~a~------t-------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~~~~~~~~~g~~~~g 453 (590)
T PRK06354 393 NVSKYRPKTPILAV------T-------PNESVARRLQLVWGVTPLLVLDA------PSTDETFDAAINVAQESGLLKQG 453 (590)
T ss_pred HHHhhCCCCCEEEE------C-------CCHHHHHHhhcccCcEEEEeCCC------CCHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999 6 99999999999999999998764 57899999999999999999999
Q ss_pred CEEEEEeec-----CCCcEEEEEEe
Q 038539 161 DSVVALHRM-----HIASVLKILVV 180 (181)
Q Consensus 161 d~vvvv~g~-----g~tn~i~i~~v 180 (181)
|.||+++|. |.||++||+++
T Consensus 454 d~vv~~~g~~~~~~g~tn~~~v~~v 478 (590)
T PRK06354 454 DLVVITAGTLVGESGSTDLMKVHVV 478 (590)
T ss_pred CEEEEEeCCCCCcCCCceeEEEEEe
Confidence 999999985 89999999987
No 9
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=1.5e-41 Score=303.33 Aligned_cols=166 Identities=43% Similarity=0.609 Sum_probs=144.3
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||+++|+.++|...+...........+..++++.+|+++|+++++++||+||.||+||+
T Consensus 311 mLS~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l~akaIVv~T~SG~TA~ 390 (480)
T cd00288 311 MLSGETAKGKYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRTAR 390 (480)
T ss_pred EEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHHH
Confidence 99999999999999999999999999987554433322211111122467999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||+|+ | ++++++|||+|+|||+|++.+.. ..+|..+.++++..+.++++++|++++|
T Consensus 391 ~lS~~RP~~pIiav------T-------~~~~~~r~l~l~~GV~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~g 456 (480)
T cd00288 391 LVSKYRPNAPIIAV------T-------RNEQTARQLHLYRGVYPVLFEEP-KPGWQEDTDARLKAAVNVAKEKGLLKKG 456 (480)
T ss_pred HHHhhCCCCCEEEE------c-------CCHHHhhheeeccCcEEEEeccc-ccccCCCHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999 6 99999999999999999988653 2367788999999999999999999999
Q ss_pred CEEEEEeec----CCCcEEEEEEe
Q 038539 161 DSVVALHRM----HIASVLKILVV 180 (181)
Q Consensus 161 d~vvvv~g~----g~tn~i~i~~v 180 (181)
|.||+++|. |.||++||+++
T Consensus 457 d~vv~~~g~~~~~~~tn~i~v~~~ 480 (480)
T cd00288 457 DLVVVVQGWPVGSGSTNTMRILTV 480 (480)
T ss_pred CEEEEEeCCCCCCCCCeEEEEEEC
Confidence 999999997 78999999875
No 10
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-40 Score=292.25 Aligned_cols=160 Identities=39% Similarity=0.529 Sum_probs=142.6
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||.++|+.+.+...+... ......+..++|+.+++++|.++++++||++|.||+||+
T Consensus 313 MLS~ETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~--~~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ta~ 390 (477)
T COG0469 313 MLSGETAAGKYPVEAVATMARIAKEAEKELPDNQLLRFR--VDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRTAR 390 (477)
T ss_pred eechhhhcCCCHHHHHHHHHHHHHHHhcccchhhhhhhc--cccccccHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHHH
Confidence 999999999999999999999999999987633222211 122334578999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||+|+ | +|++++|+|.|+|||+|++++.. ..+.++++..+++.+++.|+++.|
T Consensus 391 ~isk~Rp~~pIia~------t-------~~~~v~r~l~l~~GV~p~~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~g 452 (477)
T COG0469 391 LLSKYRPEAPIIAL------T-------PNERVARRLALVWGVYPLLVEEK-----PTSTDEMVEEAVEKLLESGLVKKG 452 (477)
T ss_pred HHhcCCCCCcEEEE------C-------CCHHHHhhhceeecceeEEecCC-----CCcHHHHHHHHHHHHHhcCcccCC
Confidence 99999999999999 6 99999999999999999999742 278999999999999999999999
Q ss_pred CEEEEEeec-----CCCcEEEEEEe
Q 038539 161 DSVVALHRM-----HIASVLKILVV 180 (181)
Q Consensus 161 d~vvvv~g~-----g~tn~i~i~~v 180 (181)
|.+++++|. |.||++||+.+
T Consensus 453 D~vvit~G~~~~~~G~tn~ikv~~v 477 (477)
T COG0469 453 DLVVITAGVPMGTVGTTNTIKVLTV 477 (477)
T ss_pred CEEEEecCcccccCCCceeEEEEeC
Confidence 999999995 88999999875
No 11
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=2.1e-39 Score=289.80 Aligned_cols=159 Identities=37% Similarity=0.530 Sum_probs=137.0
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||+|||.|+||+|||++|++||+++|+...|...|...........+..+++|.+|+++|.++++++||+||.||+||+
T Consensus 309 ~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~ 388 (473)
T TIGR01064 309 MLSGETAKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTAR 388 (473)
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHH
Confidence 89999999999999999999999999986544322322211011123567999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||||+ | +|+.++|||+|+|||+|++++.. ..+.++++..++++++++|++++|
T Consensus 389 ~vSr~rp~~PIiAv------T-------~~~~v~R~L~L~wGV~Pil~~~~-----~~~~~~~i~~a~~~l~~~gl~~~G 450 (473)
T TIGR01064 389 LLSKYRPNAPIIAV------T-------PNERVARQLALYWGVFPFLVDEE-----PSDTEARVNKALELLKEKGILKKG 450 (473)
T ss_pred HHHhhCCCCCEEEE------c-------CCHHHHHHhhccCCcEEEEeCCC-----CCCHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999 6 99999999999999999988752 256788999999999999999999
Q ss_pred CEEEEEeec------CCCcEEEE
Q 038539 161 DSVVALHRM------HIASVLKI 177 (181)
Q Consensus 161 d~vvvv~g~------g~tn~i~i 177 (181)
|.||+++|+ |.+|.+||
T Consensus 451 D~VVvv~g~~~~~~~~~~n~i~v 473 (473)
T TIGR01064 451 DLVVVIQGGAPIGGVGGTNTIRV 473 (473)
T ss_pred CEEEEEecCCCCCCCCCCeEEeC
Confidence 999999992 78998875
No 12
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=2e-39 Score=288.66 Aligned_cols=147 Identities=39% Similarity=0.550 Sum_probs=130.1
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcC-CcEEEEecCCChHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIK-AALILVLTRGGTTA 79 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~-a~aIvv~T~sG~ta 79 (181)
|||||||.|+||+|||++|++||+++|+.+++...+... .....+..+++|.+|+++|.+++ +++||+||.||+||
T Consensus 311 mLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~---~~~~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta 387 (465)
T PRK05826 311 MLSGETAAGKYPVEAVEAMARICKGAEKEFSINLSKHRL---DRQFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTA 387 (465)
T ss_pred EeccccccCcCHHHHHHHHHHHHHHHHhccchhhhhhhc---cccccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHH
Confidence 999999999999999999999999999876542122111 01113568999999999999999 99999999999999
Q ss_pred HHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCC
Q 038539 80 KMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRA 159 (181)
Q Consensus 80 ~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~ 159 (181)
+++|||||.+|||++ | +++.++|||+|+|||+|++.+.. .+.++++..+++++++.|++++
T Consensus 388 ~~isk~RP~~pI~~~------t-------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~a~~~~~~~g~~~~ 448 (465)
T PRK05826 388 RLISRFRPGAPIFAV------T-------RDEKTQRRLALYRGVYPVLFDSA------ADTDDAAEEALRLLLEKGLVES 448 (465)
T ss_pred HHHHhhCCCCCEEEE------c-------CCHHHHHHhhcccCcEEEEeCCC------CCHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999 6 99999999999999999988753 5788999999999999999999
Q ss_pred CCEEEEEeec
Q 038539 160 GDSVVALHRM 169 (181)
Q Consensus 160 Gd~vvvv~g~ 169 (181)
||.||+++|.
T Consensus 449 gd~vvvv~g~ 458 (465)
T PRK05826 449 GDLVVVTSGD 458 (465)
T ss_pred CCEEEEEeCC
Confidence 9999999987
No 13
>PLN02623 pyruvate kinase
Probab=100.00 E-value=6.5e-39 Score=289.41 Aligned_cols=158 Identities=29% Similarity=0.427 Sum_probs=137.7
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||+|||.|+||+|||++|++||+++|+.+.+...+..... ..+.+..+++|.+|+++|++++++ ||+||+||+||+
T Consensus 415 mLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~~~~ia~sA~~~A~~l~a~-Ivv~T~sG~tA~ 491 (581)
T PLN02623 415 MLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQ--AFKNHMSEMFAFHATMMANTLGTS-IIVFTRTGFMAI 491 (581)
T ss_pred EecchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhcc--ccCCChHHHHHHHHHHHHHhcCCc-EEEECCCcHHHH
Confidence 89999999999999999999999999986543322211111 112346789999999999999999 999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
+||||||.+||||+ | ++++++|||+|+|||+|++.+.. .+.|++++.+++++++.|++++|
T Consensus 492 ~lSr~RP~~pI~av------T-------~~~~~aR~L~L~~GV~P~~~~~~------~~~e~~i~~a~~~~~~~g~v~~G 552 (581)
T PLN02623 492 LLSHYRPSGTIFAF------T-------NEKRIQQRLALYQGVCPIYMQFS------DDAEETFARALSLLLNKGMVKEG 552 (581)
T ss_pred HHHhhCCCCCEEEE------C-------CCHHHHHHhhcccccEEEecCCC------CCHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999 6 99999999999999999988653 67899999999999999999999
Q ss_pred CEEEEEee--c-----CCCcEEEEEEe
Q 038539 161 DSVVALHR--M-----HIASVLKILVV 180 (181)
Q Consensus 161 d~vvvv~g--~-----g~tn~i~i~~v 180 (181)
|.||+++| . |.||+++|+++
T Consensus 553 D~vviv~g~~~p~~~~g~tn~i~V~~v 579 (581)
T PLN02623 553 EEVALVQSGRQPIWRSESTHHIQVRKV 579 (581)
T ss_pred CEEEEEeccCCCCCCCCCCeEEEEEEe
Confidence 99999986 1 78999999876
No 14
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8e-39 Score=282.87 Aligned_cols=167 Identities=46% Similarity=0.658 Sum_probs=156.5
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||++||++|++||.+||..++|..+|+.+....+.+.++.+++|.+|+.+|.+..+.+|+++|.+|++|+
T Consensus 331 mLsgEta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~~~~ie~~a~~Av~~a~~~~a~aIvv~T~sg~~a~ 410 (501)
T KOG2323|consen 331 MLSGETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMSTIESLAASAVRAATKCLASAIVVLTKSGYTAI 410 (501)
T ss_pred EeccchhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHhhcceEEEEEecCcccHH
Confidence 89999999999999999999999999999999888988877788899999999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||+++ | ..+..+||++|+|||+|+++.......|.++.|++++++++++++.|+++.|
T Consensus 411 lvskyrP~~PIi~v------t-------~~~~~aR~~~l~Rgv~Pvl~~~~~~~~~~~~~e~~i~~g~~~~k~~g~~k~g 477 (501)
T KOG2323|consen 411 LVSKYRPSVPIISV------T-------RPVLAARQSHLYRGIIPVLYARSPVEDWSEDVESRIKFGLDFGKKKGILKKG 477 (501)
T ss_pred HHhccCCCCCEEEE------e-------ccHHHHHHHHhhccceeeeecccchhhhhhhHHHHHHHHHHHHHhcchhhcC
Confidence 99999999999999 6 8999999999999999999986666788899999999999999999999999
Q ss_pred CEEEEEeec----CCCcEEEEEEe
Q 038539 161 DSVVALHRM----HIASVLKILVV 180 (181)
Q Consensus 161 d~vvvv~g~----g~tn~i~i~~v 180 (181)
|.+|++.++ |.+|++++..+
T Consensus 478 d~~vvv~~~~~~~~~~~~i~v~~~ 501 (501)
T KOG2323|consen 478 DVVVVVNKGKGGASVTNTIRVEKV 501 (501)
T ss_pred CEEEEEecccCCccceeeEEEeeC
Confidence 988888776 78999988653
No 15
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=100.00 E-value=7.6e-34 Score=210.53 Aligned_cols=112 Identities=37% Similarity=0.562 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecC
Q 038539 50 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGS 129 (181)
Q Consensus 50 ~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~ 129 (181)
+|+++.+|+++|+++++++||++|.||+||+++|||||.+||+++ | ++++++|||+|+|||+|++.+
T Consensus 1 Teaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiav------t-------~~~~~~r~l~l~~GV~p~~~~ 67 (117)
T PF02887_consen 1 TEAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAV------T-------PNESVARQLSLYWGVYPVLIE 67 (117)
T ss_dssp HHHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEE------E-------SSHHHHHHGGGSTTEEEEECS
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEE------c-------CcHHHHhhhhcccceEEEEec
Confidence 589999999999999999999999999999999999999999999 6 999999999999999999888
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec-----CCCcEEEEEE
Q 038539 130 GSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRM-----HIASVLKILV 179 (181)
Q Consensus 130 ~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~g~-----g~tn~i~i~~ 179 (181)
.. ..+.+++++.++++++++|++++||.||++.|. |.+|++||++
T Consensus 68 ~~-----~~~~~~~~~~a~~~~~~~g~~~~gd~vVv~~g~~~~~~g~tn~~~v~~ 117 (117)
T PF02887_consen 68 EF-----DKDTEELIAEALEYAKERGLLKPGDKVVVVAGMPFGTPGGTNTIRVVR 117 (117)
T ss_dssp SH-----SHSHHHHHHHHHHHHHHTTSS-TTSEEEEEEESSTTTTSSEEEEEEEE
T ss_pred cc-----cccHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEC
Confidence 75 137999999999999999999999999999994 8999999985
No 16
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=89.65 E-value=1.1 Score=34.97 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcCCC-CCEEEE
Q 038539 50 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPS-MPILSV 94 (181)
Q Consensus 50 ~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~-~pIiav 94 (181)
++..-..|++-|.+++.+-|||.+.+|.||+.++-+-+. ..++.+
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvV 57 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVV 57 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEE
Confidence 566778889999999999999999999999999999887 666666
No 17
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=78.74 E-value=6.7 Score=27.35 Aligned_cols=42 Identities=31% Similarity=0.487 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCC---------ChHHHHHHhcCCCCCEEEE
Q 038539 52 SLASSAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 52 aia~aa~~~A~~~~a~aIvv~T~s---------G~ta~~iSk~RP~~pIiav 94 (181)
.++....+.+.+.+++.||+-++. |.++..+.+.-| ||++.+
T Consensus 89 ~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv 139 (140)
T PF00582_consen 89 DVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAP-CPVLVV 139 (140)
T ss_dssp SHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTS-SEEEEE
T ss_pred ccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCC-CCEEEe
Confidence 456777888899999999998887 678888888665 899865
No 18
>PRK15005 universal stress protein F; Provisional
Probab=77.52 E-value=7.4 Score=28.32 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCcEEEEecCC--------ChHHHHHHhcCCCCCEEEE
Q 038539 54 ASSAVRTANCIKAALILVLTRG--------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 54 a~aa~~~A~~~~a~aIvv~T~s--------G~ta~~iSk~RP~~pIiav 94 (181)
+...++.|.+.+++.||+-|+. |+++..+.+.= +|||+.+
T Consensus 96 ~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a-~cpVlvV 143 (144)
T PRK15005 96 KDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHA-ECSVLVV 143 (144)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhC-CCCEEEe
Confidence 4556667888999999998774 55666676654 4898865
No 19
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=70.73 E-value=14 Score=26.16 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCC---------ChHHHHHHhcCCCCCEEEE
Q 038539 52 SLASSAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 52 aia~aa~~~A~~~~a~aIvv~T~s---------G~ta~~iSk~RP~~pIiav 94 (181)
.++...++.+++.+++.||+-++. |+++..+.++-|+|||+.+
T Consensus 72 ~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 72 DVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 456777778889999999988773 6788888888899999865
No 20
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=69.22 E-value=63 Score=27.66 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=30.6
Q ss_pred HHHHHHHHhc-----CCcEEEEecCCChHHHHHHhc----CCCCCEEEE
Q 038539 55 SSAVRTANCI-----KAALILVLTRGGTTAKMVSKY----RPSMPILSV 94 (181)
Q Consensus 55 ~aa~~~A~~~-----~a~aIvv~T~sG~ta~~iSk~----RP~~pIiav 94 (181)
..+.++.+++ +.+.||+.+-||.|+--++++ .|++.|+++
T Consensus 169 ~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv 217 (329)
T PRK14045 169 RAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGI 217 (329)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEE
Confidence 3444666665 478999999999998755543 599999999
No 21
>PRK15456 universal stress protein UspG; Provisional
Probab=66.10 E-value=18 Score=26.44 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=28.1
Q ss_pred HHHHHHHHhcCCcEEEEecCC--------ChHHHHHHhcCCCCCEEEE
Q 038539 55 SSAVRTANCIKAALILVLTRG--------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 55 ~aa~~~A~~~~a~aIvv~T~s--------G~ta~~iSk~RP~~pIiav 94 (181)
...++.|++.+++.||+-|+. |+++..+.+. -+||++.+
T Consensus 95 ~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~-a~~pVLvV 141 (142)
T PRK15456 95 DEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRH-ANLPVLVV 141 (142)
T ss_pred HHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHc-CCCCEEEe
Confidence 344567788999999998864 4566666665 45888865
No 22
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=64.94 E-value=20 Score=32.47 Aligned_cols=66 Identities=29% Similarity=0.377 Sum_probs=42.4
Q ss_pred cCCChHHHHHHhcCCCCCEEEEeecccccccccccCCChhhH---hhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHH
Q 038539 73 TRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPA---THSLIFRGLVPVLGSGSARASDEESTEETIEFALQ 149 (181)
Q Consensus 73 T~sG~ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~a---r~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~ 149 (181)
|..|.-|+++.+ |-..|.++- .| ++-+... ++|.---|| |++.... ..++-+..+.|++
T Consensus 115 Tt~~KLA~~lkk-~~~kvllVa------aD-----~~RpAA~eQL~~La~q~~v-~~f~~~~-----~~~Pv~Iak~al~ 176 (451)
T COG0541 115 TTAGKLAKYLKK-KGKKVLLVA------AD-----TYRPAAIEQLKQLAEQVGV-PFFGSGT-----EKDPVEIAKAALE 176 (451)
T ss_pred hHHHHHHHHHHH-cCCceEEEe------cc-----cCChHHHHHHHHHHHHcCC-ceecCCC-----CCCHHHHHHHHHH
Confidence 556677888888 444444433 35 3455544 445555666 6665532 2577888899999
Q ss_pred HHHHcCC
Q 038539 150 HAMAKGL 156 (181)
Q Consensus 150 ~~~~~g~ 156 (181)
.+++.++
T Consensus 177 ~ak~~~~ 183 (451)
T COG0541 177 KAKEEGY 183 (451)
T ss_pred HHHHcCC
Confidence 9999875
No 23
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.78 E-value=10 Score=31.94 Aligned_cols=32 Identities=28% Similarity=0.263 Sum_probs=28.2
Q ss_pred hcCCcEEEEecCCChHHHHHHh----cCCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk----~RP~~pIiav 94 (181)
+..++.+|+-|.+|+||-.+|- .-|.++.+.+
T Consensus 145 ~~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~l 180 (265)
T PRK04885 145 RFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQL 180 (265)
T ss_pred EEEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEE
Confidence 3578999999999999999997 6688888887
No 24
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=60.02 E-value=32 Score=25.03 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCh------HHHHHHhcCCCCCEEEE
Q 038539 54 ASSAVRTANCIKAALILVLTRGGT------TAKMVSKYRPSMPILSV 94 (181)
Q Consensus 54 a~aa~~~A~~~~a~aIvv~T~sG~------ta~~iSk~RP~~pIiav 94 (181)
+...++.|++.+++.||+-|+.+. ++..+.+ +.+||++.+
T Consensus 92 ~~~I~~~a~~~~~DLIV~Gs~~~~~~~lgSva~~v~~-~a~~pVLvv 137 (144)
T PRK15118 92 GQVLVDAIKKYDMDLVVCGHHQDFWSKLMSSARQLIN-TVHVDMLIV 137 (144)
T ss_pred HHHHHHHHHHhCCCEEEEeCcccHHHHHHHHHHHHHh-hCCCCEEEe
Confidence 445566788899999999888542 2222333 456999976
No 25
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=57.29 E-value=23 Score=25.38 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=36.4
Q ss_pred CCcEEEEecCCChHHHH-----HHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCC
Q 038539 65 KAALILVLTRGGTTAKM-----VSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGS 131 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~-----iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~ 131 (181)
+-+.+|+++.+|.|... .+|.| .+||+++ | .+.. ..+++-.+|..-+.++..
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~-g~~iI~I------T-------~~~~-l~~~~~~~~~~~~~~p~~ 99 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKER-GAKIVAI------T-------SGGK-LLEMAREHGVPVIIIPKG 99 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC-CCEEEEE------e-------CCch-HHHHHHHcCCcEEECCCC
Confidence 35789999999998654 44555 7899999 6 5554 445666667766666553
No 26
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=56.51 E-value=1e+02 Score=24.63 Aligned_cols=94 Identities=21% Similarity=0.363 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEecCCChH--HHHHH-----hc---CCCCCEEEEeecccccccccccCCChhh------
Q 038539 51 ESLASSAVRTANCI-KAALILVLTRGGTT--AKMVS-----KY---RPSMPILSVIVPEIKTDSIVWSCSDEAP------ 113 (181)
Q Consensus 51 ~aia~aa~~~A~~~-~a~aIvv~T~sG~t--a~~iS-----k~---RP~~pIiav~~~~~~t~~~~~~~~~~~~------ 113 (181)
+.+..++-.++..+ +++-|+++-..|.. |+-++ +| ||..|.+++ + .|...
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l------~-------~d~~~~ta~an 91 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIAL------N-------TDNVVLTAIAN 91 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEe------c-------CcHHHHHHHhc
Confidence 55666666666654 67778888766653 55555 23 999999988 4 33333
Q ss_pred --------Hhhhh--ccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 038539 114 --------ATHSL--IFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRM 169 (181)
Q Consensus 114 --------ar~l~--l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~g~ 169 (181)
+||+. +-.|=.-+..... .+.++ +..+++.++++|. .+|.+.|.
T Consensus 92 d~~~~~~f~~ql~~~~~~gDvli~iS~S------G~s~~-v~~a~~~Ak~~G~-----~vI~IT~~ 145 (196)
T PRK10886 92 DRLHDEVYAKQVRALGHAGDVLLAISTR------GNSRD-IVKAVEAAVTRDM-----TIVALTGY 145 (196)
T ss_pred cccHHHHHHHHHHHcCCCCCEEEEEeCC------CCCHH-HHHHHHHHHHCCC-----EEEEEeCC
Confidence 34554 3444444444432 12232 5567788888775 56766664
No 27
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=56.07 E-value=52 Score=27.15 Aligned_cols=63 Identities=16% Similarity=0.060 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecC
Q 038539 50 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGS 129 (181)
Q Consensus 50 ~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~ 129 (181)
.+.||..|.+.-.+ -+ .+|=.+|.|+..++++-|..++-.+ | ++..+++.|.=..++.-++..
T Consensus 80 K~~IA~~Aa~~I~~--g~--~Ifld~GsT~~~la~~L~~~~ltVv------T-------nsl~ia~~l~~~~~~~v~l~G 142 (251)
T PRK13509 80 KVRIAKAASQLCNP--GE--SVVINCGSTAFLLGRELCGKPVQII------T-------NYLPLANYLIDQEHDSVIIMG 142 (251)
T ss_pred HHHHHHHHHHhCCC--CC--EEEECCcHHHHHHHHHhCCCCeEEE------e-------CCHHHHHHHHhCCCCEEEEEC
Confidence 45777776666543 23 4556799999999998887787766 5 888888887655565544443
No 28
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=54.26 E-value=14 Score=32.94 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=28.4
Q ss_pred hcCCcEEEEecCCChHHHHHH----hcCCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVS----KYRPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iS----k~RP~~pIiav 94 (181)
+..+++.||-|.||.||--+| -..|.+|-|.+
T Consensus 283 ~vq~DGliVaTPTGSTAYS~sAGGSlvhP~vpAIlv 318 (409)
T KOG2178|consen 283 KVQGDGLIVATPTGSTAYSASAGGSLVHPSVPAILV 318 (409)
T ss_pred EEecceEEEecCCchhhhHhhcCCceecCCCCeEEE
Confidence 568999999999999999887 57899999988
No 29
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=53.82 E-value=34 Score=23.10 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCCCCCCCEEEEEe-ecCCC
Q 038539 145 EFALQHAMAKGLCRAGDSVVALH-RMHIA 172 (181)
Q Consensus 145 ~~a~~~~~~~g~~~~Gd~vvvv~-g~g~t 172 (181)
-.++..+.+.|.+++||+++++. |.|.+
T Consensus 54 ~~~L~~~~~~g~~~~Gd~vl~~~~G~G~~ 82 (90)
T PF08541_consen 54 PINLADALEEGRIKPGDRVLLVGFGAGFS 82 (90)
T ss_dssp HHHHHHHHHTTSSCTTEEEEEEEEETTTE
T ss_pred HHHHHHHHHcCCCCCCCEEEEEEEEhhhe
Confidence 34667889999999999999876 44543
No 30
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=53.49 E-value=62 Score=26.55 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecC
Q 038539 50 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGS 129 (181)
Q Consensus 50 ~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~ 129 (181)
..+||..|.++-.+ -+ .+|=.+|.|...++++-|..++-++ | ++..++..|.-.-++.-++..
T Consensus 80 K~~IA~~Aa~lI~~--gd--~Ifld~GtT~~~l~~~L~~~~ltVv------T-------Ns~~ia~~l~~~~~~~vil~G 142 (240)
T PRK10411 80 KADIAREALAWIEE--GM--VIALDASSTCWYLARQLPDINIQVF------T-------NSHPICQELGKRERIQLISSG 142 (240)
T ss_pred HHHHHHHHHHhCCC--CC--EEEEcCcHHHHHHHHhhCCCCeEEE------e-------CCHHHHHHHhcCCCCEEEEEC
Confidence 45788887776654 34 3345699999999999987787777 5 899999888766777655544
Q ss_pred C
Q 038539 130 G 130 (181)
Q Consensus 130 ~ 130 (181)
+
T Consensus 143 G 143 (240)
T PRK10411 143 G 143 (240)
T ss_pred C
Confidence 3
No 31
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=53.41 E-value=80 Score=28.24 Aligned_cols=80 Identities=19% Similarity=0.070 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhc--
Q 038539 8 AGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKY-- 85 (181)
Q Consensus 8 ~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~-- 85 (181)
.|.+|.+.++-+++-+.+.-+...++-.. .+ ..+....=+..+++.+.+-+.++||++..++.++..+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~l~~~~~~vv~------~~-~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~~~~~~~~~ 85 (452)
T cd00578 13 YGEELLEQVEEYAREVADLLNELPVEVVD------KP-EVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPAKMWIAGLS 85 (452)
T ss_pred cChhHHHHHHHHHHHHHHHHhcCCceEEe------cC-cccCCHHHHHHHHHHHhhcCCcEEEEcccccccHHHHHHHHH
Confidence 46888888888888777775543222111 11 1111222344555666666899999999999998876664
Q ss_pred CCCCCEEEE
Q 038539 86 RPSMPILSV 94 (181)
Q Consensus 86 RP~~pIiav 94 (181)
..+.|++-+
T Consensus 86 ~~~~Pvll~ 94 (452)
T cd00578 86 ELRKPVLLL 94 (452)
T ss_pred hcCCCEEEE
Confidence 578999987
No 32
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=52.95 E-value=1.2e+02 Score=24.35 Aligned_cols=43 Identities=12% Similarity=0.249 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcC---CcEEEEecCCChHHHH----HHhcCCCCCEEEE
Q 038539 52 SLASSAVRTANCIK---AALILVLTRGGTTAKM----VSKYRPSMPILSV 94 (181)
Q Consensus 52 aia~aa~~~A~~~~---a~aIvv~T~sG~ta~~----iSk~RP~~pIiav 94 (181)
.-...+.++.++++ .+.|++.+-+|.++.- +....|...|+++
T Consensus 137 g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v 186 (244)
T cd00640 137 GQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGV 186 (244)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 33455667777775 6899999999998774 4455688999988
No 33
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=52.12 E-value=1.1e+02 Score=24.28 Aligned_cols=45 Identities=24% Similarity=0.503 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhc-CCcEEEEecCCChHHH-------HHH---hcCCCCCEEEE
Q 038539 50 LESLASSAVRTANCI-KAALILVLTRGGTTAK-------MVS---KYRPSMPILSV 94 (181)
Q Consensus 50 ~~aia~aa~~~A~~~-~a~aIvv~T~sG~ta~-------~iS---k~RP~~pIiav 94 (181)
.+.|-.++..++..+ +-+-|+++-+.|+.|- ++. +-||.-|-+|+
T Consensus 24 ~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaL 79 (176)
T COG0279 24 IEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIAL 79 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEe
Confidence 345555665555554 2344777788887642 333 45799999999
No 34
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=51.86 E-value=94 Score=22.84 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=33.2
Q ss_pred CChhhHhhhhccCCcEE--EecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 038539 109 SDEAPATHSLIFRGLVP--VLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHR 168 (181)
Q Consensus 109 ~~~~~ar~l~l~~GV~p--~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~g 168 (181)
+.....++..+-.||-+ ++.+.. ..++.+.+.++.+++.++|+ ..+++|..
T Consensus 51 ~ea~~m~~~l~~~gv~~~~I~~e~~-----s~~T~ena~~~~~~~~~~~~----~~i~lVTs 103 (150)
T cd06259 51 SEAEAMARYLIELGVPAEAILLEDR-----STNTYENARFSAELLRERGI----RSVLLVTS 103 (150)
T ss_pred CHHHHHHHHHHHcCCCHHHeeecCC-----CCCHHHHHHHHHHHHHhcCC----CeEEEECC
Confidence 34556677777778733 333332 25677778888899999887 56666543
No 35
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=50.67 E-value=43 Score=31.24 Aligned_cols=72 Identities=25% Similarity=0.294 Sum_probs=46.0
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCC--C--CCcc----CHHHHHHHHHHHHH
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSAR--A--SDEE----STEETIEFALQHAM 152 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~--~--~~~~----~~~~~i~~a~~~~~ 152 (181)
.+-+-||...++.+ +....+.+++-|||=-|++.-.... + -|.+ ..|..++..+++-.
T Consensus 184 ~v~~~rpdLk~vvm--------------Satl~a~Kfq~yf~n~Pll~vpg~~PvEi~Yt~e~erDylEaairtV~qih~ 249 (699)
T KOG0925|consen 184 EVVRNRPDLKLVVM--------------SATLDAEKFQRYFGNAPLLAVPGTHPVEIFYTPEPERDYLEAAIRTVLQIHM 249 (699)
T ss_pred HHHhhCCCceEEEe--------------ecccchHHHHHHhCCCCeeecCCCCceEEEecCCCChhHHHHHHHHHHHHHh
Confidence 36688999999988 4788889999999988876422110 0 0112 23334444444433
Q ss_pred HcCCCCCCCEEEEEeec
Q 038539 153 AKGLCRAGDSVVALHRM 169 (181)
Q Consensus 153 ~~g~~~~Gd~vvvv~g~ 169 (181)
... +||.++.+.|.
T Consensus 250 ~ee---~GDilvFLtge 263 (699)
T KOG0925|consen 250 CEE---PGDILVFLTGE 263 (699)
T ss_pred ccC---CCCEEEEecCH
Confidence 333 89999999875
No 36
>PLN02929 NADH kinase
Probab=49.57 E-value=14 Score=31.75 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=24.1
Q ss_pred hcCCcEEEEecCCChHHHHHHhcCCCCCE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKYRPSMPI 91 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~RP~~pI 91 (181)
+..++.+++-|.+|+||-.+|--=|-.||
T Consensus 193 ~~~~DGliVsTpTGSTAY~lSAGG~i~Pi 221 (301)
T PLN02929 193 NVRSSGLRVSTAAGSTAAMLSAGGFPMPL 221 (301)
T ss_pred EeecCcEEEeCCccHHHHHHhcCCCCCCC
Confidence 45789999999999999999988844443
No 37
>TIGR00035 asp_race aspartate racemase.
Probab=47.87 E-value=1.5e+02 Score=23.91 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCc----------chHHHHHhc-CCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCCh
Q 038539 9 GAYPEIAVQTMARICLEAENFINYG----------DLSKKIMET-APMPMSPLESLASSAVRTANCIKAALILVLTRGGT 77 (181)
Q Consensus 9 G~yPveaV~~M~~I~~~aE~~~~~~----------~~~~~~~~~-~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ 77 (181)
|-=|.-++..+.+|++.+....+.+ .+.++.... .....++.+.+..++-.+ ++.++++|++..+|-.
T Consensus 9 Gmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L-~~~g~d~iviaCNTah 87 (229)
T TIGR00035 9 GMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKL-ENAGADFIIMPCNTAH 87 (229)
T ss_pred CcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHH-HHcCCCEEEECCccHH
Confidence 4459999999999998887543321 011111000 011223444555554444 4678999999888866
Q ss_pred H-HHHHHhcCCCCCEEEE
Q 038539 78 T-AKMVSKYRPSMPILSV 94 (181)
Q Consensus 78 t-a~~iSk~RP~~pIiav 94 (181)
. ...+.+ +-+.||+.+
T Consensus 88 ~~~~~l~~-~~~iPii~i 104 (229)
T TIGR00035 88 KFAEDIQK-AIGIPLISM 104 (229)
T ss_pred HHHHHHHH-hCCCCEech
Confidence 5 334443 235899986
No 38
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=47.08 E-value=38 Score=26.26 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=37.5
Q ss_pred CcEEEEecCCChHHH-----HHHhcCC-CCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCC
Q 038539 66 AALILVLTRGGTTAK-----MVSKYRP-SMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGS 131 (181)
Q Consensus 66 a~aIvv~T~sG~ta~-----~iSk~RP-~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~ 131 (181)
...=|+||..|.||- ++...+. ...|+++ | +| +..++...-+|...+-....
T Consensus 66 ~gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VV------T-------SD-~~iq~~~~~~GA~~iss~ef 123 (166)
T PF05991_consen 66 GGIEVVFTKEGETADDYIERLVRELKNRPRQVTVV------T-------SD-REIQRAARGRGAKRISSEEF 123 (166)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhccCCCeEEEE------e-------CC-HHHHHHHhhCCCEEEcHHHH
Confidence 355689999999984 5666665 5788888 5 44 45555568999999876653
No 39
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=44.55 E-value=81 Score=24.09 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=9.2
Q ss_pred CChHHHHHHhcCCCC-CEEEE
Q 038539 75 GGTTAKMVSKYRPSM-PILSV 94 (181)
Q Consensus 75 sG~ta~~iSk~RP~~-pIiav 94 (181)
+|.|...++++=|.. ++-.+
T Consensus 27 ~GtT~~~la~~L~~~~~ltVv 47 (161)
T PF00455_consen 27 SGTTTLELAKYLPDKKNLTVV 47 (161)
T ss_pred CchHHHHHHHHhhcCCceEEE
Confidence 455555555444443 44444
No 40
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.13 E-value=28 Score=29.73 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=27.2
Q ss_pred hcCCcEEEEecCCChHHHHHHh----cCCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk----~RP~~pIiav 94 (181)
...++.+|+-|.+|+||-.+|- ..|.++.+.+
T Consensus 172 ~~~~DGlivsTptGSTAY~lSAGGpIv~p~~~~~~i 207 (295)
T PRK01231 172 SQRSDGLIVSTPTGSTAYALSGGGPIMHPKLDAIVL 207 (295)
T ss_pred EEEcceEEEeCCCCchhhhhhcCCceecCCCCeEEE
Confidence 4578999999999999999997 4577887766
No 41
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=44.10 E-value=72 Score=25.65 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=32.6
Q ss_pred CcEEEEec----CCChHH--HHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 66 AALILVLT----RGGTTA--KMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 66 a~aIvv~T----~sG~ta--~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+.|++-- .+|... ..+.+..|..+|+.+ |+ .+....+.+...-|+..++.+.
T Consensus 53 ~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vvvl------t~------~~~~~~~~~~~~~Ga~G~l~K~ 111 (216)
T PRK10100 53 GSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLL------NT------PEDYPYREIENWPHINGVFYAM 111 (216)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHHhCCCCcEEEE------EC------CchhHHHHHHHhcCCeEEEECC
Confidence 57666533 355544 346777899999999 62 4443332233334998888876
No 42
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=43.69 E-value=83 Score=22.68 Aligned_cols=43 Identities=14% Similarity=0.027 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCC---------C-hHHHHHHh-cCCCCCEEEE
Q 038539 52 SLASSAVRTANCIKAALILVLTRG---------G-TTAKMVSK-YRPSMPILSV 94 (181)
Q Consensus 52 aia~aa~~~A~~~~a~aIvv~T~s---------G-~ta~~iSk-~RP~~pIiav 94 (181)
..+...++.|++.+++.||+-++. | .++..+.+ -+|.||++.+
T Consensus 90 ~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv 143 (146)
T cd01989 90 DVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVV 143 (146)
T ss_pred cHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEE
Confidence 355667778899999999987652 2 34444443 3345999987
No 43
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=43.64 E-value=26 Score=29.57 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=27.8
Q ss_pred hcCCcEEEEecCCChHHHHHHhc----CCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKY----RPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~----RP~~pIiav 94 (181)
...++++++-|.+|+||-.+|-- .|..+.+.+
T Consensus 163 ~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~l 198 (281)
T COG0061 163 SFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQL 198 (281)
T ss_pred EEecCEEEEEcCCcHHHHhhhcCCCccCCCCCeEEE
Confidence 56799999999999999999965 578888887
No 44
>PRK09982 universal stress protein UspD; Provisional
Probab=43.19 E-value=85 Score=22.93 Aligned_cols=42 Identities=10% Similarity=0.123 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCChHHHHHH-----hcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTRGGTTAKMVS-----KYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~sG~ta~~iS-----k~RP~~pIiav 94 (181)
.+...++.|++.+++.||+-+..+...++++ --+-+|||+.+
T Consensus 91 p~~~I~~~A~~~~aDLIVmG~~~~~~~~~~~va~~V~~~s~~pVLvv 137 (142)
T PRK09982 91 MPETLLEIMQKEQCDLLVCGHHHSFINRLMPAYRGMINKMSADLLIV 137 (142)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChhHHHHHHHHHHHHHhcCCCCEEEe
Confidence 3455556789999999999875333234432 12468999966
No 45
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=42.77 E-value=1.6e+02 Score=23.18 Aligned_cols=77 Identities=13% Similarity=0.054 Sum_probs=46.0
Q ss_pred hcCCcEEEEecCCChHHHHHHhc--------CCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCC
Q 038539 63 CIKAALILVLTRGGTTAKMVSKY--------RPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARA 134 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~--------RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~ 134 (181)
..+.+.|| || |+..++.+.++ -...+++|+ .+.+++.|. -+|+.+.+.+..
T Consensus 50 ~~~~d~ii-ft-S~~av~~~~~~~~~~~~~~~~~~~~~av---------------G~~Ta~~l~-~~G~~~~~~~~~--- 108 (249)
T PRK05928 50 ALGADWVI-FT-SKNAVEFLLSALKKKKLKWPKNKKYAAI---------------GEKTALALK-KLGGKVVFVPED--- 108 (249)
T ss_pred CCCCCEEE-EE-CHHHHHHHHHHHHhcCcCCCCCCEEEEE---------------CHHHHHHHH-HcCCCccccCCC---
Confidence 33567655 44 35555544332 346888888 588888886 478877766543
Q ss_pred CCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 038539 135 SDEESTEETIEFALQHAMAKGLCRAGDSVVALHRM 169 (181)
Q Consensus 135 ~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~g~ 169 (181)
.+.++++. .+.+.. ..|.+|+++.|.
T Consensus 109 ---~~~~~l~~----~l~~~~--~~~~~ili~~~~ 134 (249)
T PRK05928 109 ---GESSELLL----ELPELL--LKGKRVLYLRGN 134 (249)
T ss_pred ---CcChHHHH----hChhhh--cCCCEEEEECCC
Confidence 33444333 333332 367888888775
No 46
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=42.28 E-value=95 Score=22.94 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=25.4
Q ss_pred ChhhHhhhhccCCcEE--EecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEee
Q 038539 110 DEAPATHSLIFRGLVP--VLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHR 168 (181)
Q Consensus 110 ~~~~ar~l~l~~GV~p--~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~g 168 (181)
.....++..+-.||-+ ++.+.. ..++.+.+.++.+++.++|+ +.+++|+.
T Consensus 55 ea~~~~~~l~~~gvp~~~I~~e~~-----s~~T~ena~~~~~~~~~~~~----~~iilVT~ 106 (155)
T PF02698_consen 55 EAEAMRDYLIELGVPEERIILEPK-----STNTYENARFSKRLLKERGW----QSIILVTS 106 (155)
T ss_dssp HHHHHHHHHHHT---GGGEEEE---------SHHHHHHHHHHHHHT-SS----S-EEEE--
T ss_pred HHHHHHHHHHhcccchheeEccCC-----CCCHHHHHHHHHHHHHhhcC----CeEEEECC
Confidence 3445566666668743 222222 25677778888899998887 45666543
No 47
>PRK13936 phosphoheptose isomerase; Provisional
Probab=42.28 E-value=1.7e+02 Score=23.06 Aligned_cols=44 Identities=25% Similarity=0.517 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEecCCCh--HHHHHH-----hc---CCCCCEEEE
Q 038539 51 ESLASSAVRTANCI-KAALILVLTRGGT--TAKMVS-----KY---RPSMPILSV 94 (181)
Q Consensus 51 ~aia~aa~~~A~~~-~a~aIvv~T~sG~--ta~~iS-----k~---RP~~pIiav 94 (181)
+.|..++-.+++.+ +++-|.+|-.+|. .|+.++ |+ ||..|.+++
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~ 81 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILACGNGGSAADAQHFSAELLNRFERERPSLPAIAL 81 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEec
Confidence 34444555555544 6788888866555 344444 33 888888776
No 48
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=42.15 E-value=67 Score=21.80 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=27.2
Q ss_pred HHHHHHHHHhcCCcEEEEecC---------CChHHHHHHhcCCCCCEEE
Q 038539 54 ASSAVRTANCIKAALILVLTR---------GGTTAKMVSKYRPSMPILS 93 (181)
Q Consensus 54 a~aa~~~A~~~~a~aIvv~T~---------sG~ta~~iSk~RP~~pIia 93 (181)
+....+.+.+.+++.+|+-+. .|.++..|.+. ..||++.
T Consensus 82 ~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~-~~~pvli 129 (130)
T cd00293 82 AEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRH-APCPVLV 129 (130)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhC-CCCCEEe
Confidence 567777788888887777553 56666666655 6777774
No 49
>PRK11175 universal stress protein UspE; Provisional
Probab=41.59 E-value=76 Score=26.13 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCcEEEEecCC---------ChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~s---------G~ta~~iSk~RP~~pIiav 94 (181)
.+....+.+.+.+++.||+-++. |.++..|.+. .+||++.+
T Consensus 95 ~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~-~~~pvlvv 144 (305)
T PRK11175 95 PFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRK-CPCPVLMV 144 (305)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhc-CCCCEEEe
Confidence 34556777788899999987764 4555656644 45999966
No 50
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.48 E-value=31 Score=29.02 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=27.3
Q ss_pred hcCCcEEEEecCCChHHHHHHhcC----CCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKYR----PSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~R----P~~pIiav 94 (181)
+..++++|+-|.+|+||-.+|--- |.++.+.+
T Consensus 134 ~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~i 169 (259)
T PRK00561 134 KYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQI 169 (259)
T ss_pred EEecCEEEEeCchHHHHHHHhCCCCccCCCCCeEEE
Confidence 457899999999999999999654 68888877
No 51
>PRK10200 putative racemase; Provisional
Probab=41.41 E-value=1.9e+02 Score=23.45 Aligned_cols=85 Identities=16% Similarity=-0.003 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCC----------cchHHHHHh-cCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCCh
Q 038539 9 GAYPEIAVQTMARICLEAENFINY----------GDLSKKIME-TAPMPMSPLESLASSAVRTANCIKAALILVLTRGGT 77 (181)
Q Consensus 9 G~yPveaV~~M~~I~~~aE~~~~~----------~~~~~~~~~-~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ 77 (181)
|-=|..++..+.+|++.+-...+. ..+.++... ......++.+.++..+-.+ ++.++++|++..+|-.
T Consensus 9 GmGp~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L-~~~g~~~iviaCNTah 87 (230)
T PRK10200 9 GMSWESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGL-QRAGAEGIVLCTNTMH 87 (230)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHH-HHcCCCEEEECCchHH
Confidence 444999999999999988763321 111111100 0112234667777776666 4779999999988877
Q ss_pred HHHHHHhcCCCCCEEEE
Q 038539 78 TAKMVSKYRPSMPILSV 94 (181)
Q Consensus 78 ta~~iSk~RP~~pIiav 94 (181)
...---+-+-+.||+.+
T Consensus 88 ~~~~~l~~~~~iPii~i 104 (230)
T PRK10200 88 KVADAIESRCSLPFLHI 104 (230)
T ss_pred HHHHHHHHhCCCCEeeh
Confidence 75322222336899986
No 52
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.33 E-value=29 Score=29.63 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=27.4
Q ss_pred hcCCcEEEEecCCChHHHHHHhc----CCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKY----RPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~----RP~~pIiav 94 (181)
+..++.+|+-|.+|+||-.+|-- .|.++.+.+
T Consensus 176 ~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~v 211 (305)
T PRK02645 176 QYQGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIV 211 (305)
T ss_pred EEecCEEEEecCCChhhhhhhcCCcccCCCCCeEEE
Confidence 45789999999999999999964 578888877
No 53
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=41.23 E-value=97 Score=21.54 Aligned_cols=41 Identities=29% Similarity=0.319 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCcEEEEecCC---------ChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~s---------G~ta~~iSk~RP~~pIiav 94 (181)
.....++.+++.+++.||+-+.. |.++..+-+ |.+||++.+
T Consensus 82 ~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~-~~~~pvlvv 131 (132)
T cd01988 82 IASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLE-SAPCDVAVV 131 (132)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHh-cCCCCEEEe
Confidence 55566777888899988887663 344555543 455888865
No 54
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.20 E-value=33 Score=29.48 Aligned_cols=32 Identities=31% Similarity=0.413 Sum_probs=26.8
Q ss_pred hcCCcEEEEecCCChHHHHHHhc----CCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKY----RPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~----RP~~pIiav 94 (181)
...++.+|+-|.+|+||-.+|-- .|.++.+.+
T Consensus 178 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~i 213 (305)
T PRK02649 178 DIAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQL 213 (305)
T ss_pred EEecCeEEEeCCCcHHHHHhhCCCcccCCCCCeEEE
Confidence 45799999999999999999974 467777766
No 55
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=41.17 E-value=1.3e+02 Score=24.87 Aligned_cols=84 Identities=17% Similarity=0.061 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCcchHHHH-Hh-----------cCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCC
Q 038539 9 GAYPEIAVQTMARICLEAENFINYGDLSKKI-ME-----------TAPMPMSPLESLASSAVRTANCIKAALILVLTRGG 76 (181)
Q Consensus 9 G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~-~~-----------~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG 76 (181)
|.=|.-++.+-++|++......... ....+ .. ....-.++.+.++.+|..+. +.+|+.|++.|+|-
T Consensus 9 GMgpeST~~yyr~ine~~~~~~g~~-h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le-~~GAd~i~l~~NT~ 86 (230)
T COG1794 9 GMGPESTAPYYRKINEAVRAKLGGL-HSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLE-RAGADFIVLPTNTM 86 (230)
T ss_pred CCChHHHHHHHHHHHHHHHHHhCCc-CcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHH-hcCCCEEEEeCCcH
Confidence 5558899999999999888643211 01111 00 11112345666666666665 77999999998864
Q ss_pred hHHHHHHhcCCCCCEEEE
Q 038539 77 TTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 77 ~ta~~iSk~RP~~pIiav 94 (181)
.-.--==+-.-..|+|-+
T Consensus 87 H~~~d~iq~~~~iPllhI 104 (230)
T COG1794 87 HKVADDIQKAVGIPLLHI 104 (230)
T ss_pred HHHHHHHHHhcCCCeehH
Confidence 331111123345666654
No 56
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=41.10 E-value=86 Score=26.36 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=30.7
Q ss_pred HHHHHHHhc----CCcEEEEecCCChHHHHHH----hcCCCCCEEEE
Q 038539 56 SAVRTANCI----KAALILVLTRGGTTAKMVS----KYRPSMPILSV 94 (181)
Q Consensus 56 aa~~~A~~~----~a~aIvv~T~sG~ta~~iS----k~RP~~pIiav 94 (181)
.+.++.+++ +.++||+..-+|.|+--++ .++|+++|+++
T Consensus 156 ~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV 202 (311)
T TIGR01275 156 AVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGV 202 (311)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEE
Confidence 456677776 4799999999999976554 45899999987
No 57
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.08 E-value=35 Score=28.69 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=26.9
Q ss_pred hcCCcEEEEecCCChHHHHHHhcC----CCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKYR----PSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~R----P~~pIiav 94 (181)
+..++.+|+-|.+|+||-.+|--= |.++.+.+
T Consensus 146 ~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~i 181 (264)
T PRK03501 146 TFRGDGMVVSTPTGSTAYNKSVRGAVVDPLIPCFQV 181 (264)
T ss_pred EEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEE
Confidence 457999999999999999999754 57777766
No 58
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=40.46 E-value=90 Score=27.02 Aligned_cols=49 Identities=22% Similarity=0.430 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHh--------------------cCCCCCEEEEeecccc
Q 038539 48 SPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSK--------------------YRPSMPILSVIVPEIK 100 (181)
Q Consensus 48 ~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk--------------------~RP~~pIiav~~~~~~ 100 (181)
++.......+++.+.+.+++.||.+ .|-++.=++| ++|..|+++| |+..
T Consensus 66 ~p~~~~v~~~~~~~~~~~~D~IIav--GGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~V--PTta 134 (357)
T cd08181 66 NPSLETIMEAVEIAKKFNADFVIGI--GGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAI--PTTA 134 (357)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEEe--CCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEE--eCCC
Confidence 3455567778888889999998877 7776665555 5788999977 7443
No 59
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=40.45 E-value=30 Score=23.54 Aligned_cols=14 Identities=21% Similarity=0.238 Sum_probs=12.5
Q ss_pred CCCCCCEEEEEeec
Q 038539 156 LCRAGDSVVALHRM 169 (181)
Q Consensus 156 ~~~~Gd~vvvv~g~ 169 (181)
-++.||.|++++|.
T Consensus 6 ~I~kGD~V~Vi~G~ 19 (76)
T PRK12281 6 KVKKGDMVKVIAGD 19 (76)
T ss_pred cccCCCEEEEeEcC
Confidence 47899999999997
No 60
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=39.29 E-value=1.5e+02 Score=25.39 Aligned_cols=50 Identities=18% Similarity=0.281 Sum_probs=31.7
Q ss_pred CCcEEEEecCCChHHHHH-----HhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecC
Q 038539 65 KAALILVLTRGGTTAKMV-----SKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGS 129 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~i-----Sk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~ 129 (181)
+-+.+|++|.||.|...+ ++-| .++||++ | ++.. ..+++-.+|...+..+
T Consensus 78 ~~dlvI~iS~SG~T~e~~~a~~~a~~~-ga~vIaI------T-------~~~~-L~~~a~~~~~~~i~ip 132 (337)
T PRK08674 78 EKTLVIAVSYSGNTEETLSAVEQALKR-GAKIIAI------T-------SGGK-LKEMAKEHGLPVIIVP 132 (337)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHC-CCeEEEE------C-------CCch-HHHHHHhcCCeEEEeC
Confidence 346889999999986653 3444 6899999 6 4444 3344444455555444
No 61
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=39.27 E-value=1.1e+02 Score=25.19 Aligned_cols=63 Identities=13% Similarity=-0.033 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcCCCC-CEEEEeecccccccccccCCChhhHhhhhccCCcEEEec
Q 038539 50 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSM-PILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLG 128 (181)
Q Consensus 50 ~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~~-pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~ 128 (181)
...||..|.++-.+ -+ .+|=.+|.|...++++-|.. ++-.+ | ++..++..|.-.-++.-++.
T Consensus 79 K~~IA~~Aa~lI~~--g~--tIflD~GtT~~~la~~L~~~~~ltvv------T-------nsl~i~~~l~~~~~~~vill 141 (252)
T PRK10681 79 KRRAAQLAATLVEP--NQ--TLFFDCGTTTPWIIEAIDNELPFTAV------C-------YSLNTFLALQEKPHCRAILC 141 (252)
T ss_pred HHHHHHHHHhhcCC--CC--EEEEECCccHHHHHHhcCCCCCeEEE------E-------CCHHHHHHHhhCCCCEEEEE
Confidence 46777776666443 33 34556899999999988864 66666 5 88888888876666655544
Q ss_pred C
Q 038539 129 S 129 (181)
Q Consensus 129 ~ 129 (181)
.
T Consensus 142 G 142 (252)
T PRK10681 142 G 142 (252)
T ss_pred C
Confidence 3
No 62
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=39.10 E-value=54 Score=28.02 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=29.6
Q ss_pred HHHHHHHhc-----CCcEEEEecCCChHHH----HHHhcCCCCCEEEE
Q 038539 56 SAVRTANCI-----KAALILVLTRGGTTAK----MVSKYRPSMPILSV 94 (181)
Q Consensus 56 aa~~~A~~~-----~a~aIvv~T~sG~ta~----~iSk~RP~~pIiav 94 (181)
-+.++.+++ ..+.||+..-+|.|+. .+..++|+++|+++
T Consensus 169 ~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigV 216 (331)
T PRK03910 169 CALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGV 216 (331)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEE
Confidence 344555554 3789999999999974 45556799999988
No 63
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=38.51 E-value=39 Score=31.25 Aligned_cols=32 Identities=22% Similarity=0.467 Sum_probs=27.4
Q ss_pred hcCCcEEEEecCCChHHHHHHh----cCCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk----~RP~~pIiav 94 (181)
...++++||-|.||+||-.+|- ..|.++.+.+
T Consensus 377 ~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~l~~ivl 412 (508)
T PLN02935 377 CVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILF 412 (508)
T ss_pred EEECCcEEEecCccHHHHHHhcCCcccCCCCCeEEE
Confidence 4578999999999999999996 4578888877
No 64
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=37.84 E-value=55 Score=22.40 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=22.8
Q ss_pred cEEEEecCCChHHHHHHhcCCCCCEEEE
Q 038539 67 ALILVLTRGGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 67 ~aIvv~T~sG~ta~~iSk~RP~~pIiav 94 (181)
+.+-+-+-+|..+..+++.+|.+.|+++
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~gv 31 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVGV 31 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEEE
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEEE
Confidence 3344557789999999998899999999
No 65
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.80 E-value=40 Score=28.79 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=26.4
Q ss_pred hcCCcEEEEecCCChHHHHHHhc----CCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKY----RPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~----RP~~pIiav 94 (181)
+..++.+|+-|.+|+||-.+|-- .|.++.+.+
T Consensus 178 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~i 213 (296)
T PRK04539 178 TQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTL 213 (296)
T ss_pred EEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEE
Confidence 34789999999999999999974 467777766
No 66
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=37.63 E-value=42 Score=22.24 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=10.8
Q ss_pred HHHHcCCCCCCCEEEE
Q 038539 150 HAMAKGLCRAGDSVVA 165 (181)
Q Consensus 150 ~~~~~g~~~~Gd~vvv 165 (181)
.|++.| +++||.|.+
T Consensus 48 ~L~~~G-~~~GD~V~I 62 (69)
T TIGR03595 48 ALRKAG-AKDGDTVRI 62 (69)
T ss_pred HHHHcC-CCCCCEEEE
Confidence 345555 789999876
No 67
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=37.54 E-value=3e+02 Score=24.47 Aligned_cols=88 Identities=16% Similarity=0.170 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcC--CCCCEEEEeecccccccccccCCC-hhhHhhhhccCCcEE
Q 038539 49 PLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYR--PSMPILSVIVPEIKTDSIVWSCSD-EAPATHSLIFRGLVP 125 (181)
Q Consensus 49 ~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~R--P~~pIiav~~~~~~t~~~~~~~~~-~~~ar~l~l~~GV~p 125 (181)
..+--+..++..+.+.+.+.|| ...+|.+++-+|.|- -..|.+.+ +| .+ .....+.....|+.-
T Consensus 100 FKdRga~~~i~~a~~~g~~~Vv-~aSsGN~g~alA~~aa~~Gi~~~I~-vP-----------~~~~~~~~~~~~~~ga~v 166 (398)
T TIGR03844 100 FKELEALPTMQRLKERGGKTLV-VASAGNTGRAFAEVSAITGQPVILV-VP-----------KSSADRLWTTEPASSVLL 166 (398)
T ss_pred cHHHHHHHHHHHHHHcCCCEEE-EECCCHHHHHHHHHHHHcCCcEEEE-EC-----------CChHHHHHHHhhCCcEEE
Confidence 3455566666667777777655 567999998887663 34555554 22 12 111222235677766
Q ss_pred EecCCCCCCCCccCHHHHHHHHHHHHHHcCCC
Q 038539 126 VLGSGSARASDEESTEETIEFALQHAMAKGLC 157 (181)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~ 157 (181)
+.... +.++..+.+.+.+.+.|+.
T Consensus 167 v~v~g--------~~d~a~~~a~~~a~~~g~~ 190 (398)
T TIGR03844 167 VTVDG--------DYTDAIALADRIATLPGFV 190 (398)
T ss_pred EECCC--------CHHHHHHHHHHHHHhCCcc
Confidence 65543 3455555565655555543
No 68
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=37.40 E-value=46 Score=23.69 Aligned_cols=29 Identities=21% Similarity=0.523 Sum_probs=22.7
Q ss_pred CCcEEEEecCCChHHHH-----HHhcCCCCCEEEE
Q 038539 65 KAALILVLTRGGTTAKM-----VSKYRPSMPILSV 94 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~-----iSk~RP~~pIiav 94 (181)
+-+.+|+++.+|.+... .+|-| .+||+++
T Consensus 47 ~~d~vi~iS~sG~t~~~~~~~~~a~~~-g~~vi~i 80 (128)
T cd05014 47 PGDVVIAISNSGETDELLNLLPHLKRR-GAPIIAI 80 (128)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCeEEEE
Confidence 35789999999998654 34555 7999999
No 69
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=37.02 E-value=37 Score=23.47 Aligned_cols=14 Identities=21% Similarity=0.332 Sum_probs=12.6
Q ss_pred CCCCCCEEEEEeec
Q 038539 156 LCRAGDSVVALHRM 169 (181)
Q Consensus 156 ~~~~Gd~vvvv~g~ 169 (181)
-+.+||.|.|++|.
T Consensus 8 ~I~~GD~V~Vi~G~ 21 (83)
T CHL00141 8 HVKIGDTVKIISGS 21 (83)
T ss_pred cccCCCEEEEeEcC
Confidence 47899999999998
No 70
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.69 E-value=50 Score=27.87 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=26.9
Q ss_pred hcCCcEEEEecCCChHHHHHHhcC----CCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKYR----PSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~R----P~~pIiav 94 (181)
...++++|+-|.+|+||-.+|--- |..+.+.+
T Consensus 162 ~~~gDGvIvsTptGSTAY~lSaGGpIv~p~~~~~~v 197 (277)
T PRK03708 162 EVRADGLIISTPTGSTAYAMSAGGPFVDPRLDAILI 197 (277)
T ss_pred EEecCEEEEeCCCchHHHHhhCCCcccCCCCCeEEE
Confidence 467899999999999999999754 57777766
No 71
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.51 E-value=22 Score=30.22 Aligned_cols=32 Identities=22% Similarity=0.178 Sum_probs=26.4
Q ss_pred hcCCcEEEEecCCChHHHHHHhc----CCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKY----RPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~----RP~~pIiav 94 (181)
...++.+|+-|.+|+||-.+|-- .|.++.+.+
T Consensus 174 ~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~~~l 209 (287)
T PRK14077 174 EYFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFIL 209 (287)
T ss_pred EEEcCEEEEeCCCchhHhHhhcCCcccCCCCCeEEE
Confidence 45799999999999999999964 367777766
No 72
>PRK10717 cysteine synthase A; Provisional
Probab=35.74 E-value=1.4e+02 Score=25.47 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=31.3
Q ss_pred HHHHHHHHhcC--CcEEEEecCCChHHHH----HHhcCCCCCEEEE
Q 038539 55 SSAVRTANCIK--AALILVLTRGGTTAKM----VSKYRPSMPILSV 94 (181)
Q Consensus 55 ~aa~~~A~~~~--a~aIvv~T~sG~ta~~----iSk~RP~~pIiav 94 (181)
..+.++.++++ .++||+..-+|.+..- +..++|++.|+++
T Consensus 164 t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~V 209 (330)
T PRK10717 164 TTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLA 209 (330)
T ss_pred hHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 44667777775 7999999999998654 4456799999988
No 73
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=35.64 E-value=1e+02 Score=26.41 Aligned_cols=84 Identities=13% Similarity=-0.069 Sum_probs=46.7
Q ss_pred EEEEecCCChHHH--HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCC--------cEEEecCCCCCCCCc
Q 038539 68 LILVLTRGGTTAK--MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRG--------LVPVLGSGSARASDE 137 (181)
Q Consensus 68 aIvv~T~sG~ta~--~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~G--------V~p~~~~~~~~~~~~ 137 (181)
+|+=.|-+|.|+. .||+. ...||.. +.-.+.|.|.+--+ -+|.+.-+....+-.
T Consensus 8 ~I~GpTasGKS~LAl~LA~~--~~eIIsa--------------DS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~ 71 (300)
T PRK14729 8 FIFGPTAVGKSNILFHFPKG--KAEIINV--------------DSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKE 71 (300)
T ss_pred EEECCCccCHHHHHHHHHHh--CCcEEec--------------cHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCc
Confidence 5566799999965 57777 4688877 45555555543211 123332111110001
Q ss_pred cCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 038539 138 ESTEETIEFALQHAMAKGLCRAGDSVVALHRM 169 (181)
Q Consensus 138 ~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~g~ 169 (181)
-+.....+.|.+.+.+ +...|...|++.|.
T Consensus 72 ~sv~~f~~~a~~~i~~--i~~~gk~PilvGGT 101 (300)
T PRK14729 72 YNLGIFYKEALKIIKE--LRQQKKIPIFVGGS 101 (300)
T ss_pred eeHHHHHHHHHHHHHH--HHHCCCCEEEEeCc
Confidence 2455556666666554 34456677888887
No 74
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=35.50 E-value=2.6e+02 Score=23.28 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=30.3
Q ss_pred HHHHHHHHhcC--CcEEEEecCCChHHH----HHHhcCCCCCEEEE
Q 038539 55 SSAVRTANCIK--AALILVLTRGGTTAK----MVSKYRPSMPILSV 94 (181)
Q Consensus 55 ~aa~~~A~~~~--a~aIvv~T~sG~ta~----~iSk~RP~~pIiav 94 (181)
..+.++.++++ .+.||+.+-+|.++- .+..++|...|+++
T Consensus 151 t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~V 196 (298)
T TIGR01139 151 TTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAV 196 (298)
T ss_pred HHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEE
Confidence 34556666664 799999999998864 45566799999988
No 75
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=35.29 E-value=1.4e+02 Score=19.98 Aligned_cols=62 Identities=23% Similarity=0.328 Sum_probs=40.3
Q ss_pred HHHHHHhcCCcEEEEec--CCChH---HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 57 AVRTANCIKAALILVLT--RGGTT---AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T--~sG~t---a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
+.+...+...+.|++-- ..+.- ++.|.+..|..||+.+ |+ .+.....+-.+-.|+.-++.+.
T Consensus 35 ~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~------t~------~~~~~~~~~~~~~g~~~~l~kp 101 (112)
T PF00072_consen 35 ALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVV------TD------EDDSDEVQEALRAGADDYLSKP 101 (112)
T ss_dssp HHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEE------ES------STSHHHHHHHHHTTESEEEESS
T ss_pred HHHHhcccCceEEEEEeeeccccccccccccccccccccEEEe------cC------CCCHHHHHHHHHCCCCEEEECC
Confidence 44445666788777652 22222 5667777799999999 52 3343445555688998888876
No 76
>KOG2618 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.97 E-value=54 Score=28.59 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=32.6
Q ss_pred ccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 038539 119 IFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRM 169 (181)
Q Consensus 119 l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~g~ 169 (181)
+-||.+|+..+....-.......-+....++...=.+.+.+|--||++.|.
T Consensus 80 MrWGLVPfwtK~d~~~~~f~tfNaRlE~lmEsksfrrpl~KgRCvVl~dGf 130 (366)
T KOG2618|consen 80 MRWGLVPFWTKDDSQFKTFRTFNARLENLMESKSFRRPLEKGRCVVLMDGF 130 (366)
T ss_pred eeeccccceecCCccccceeecccchHHHHhhhhhhccCCCCcEEEEecce
Confidence 669999998875422111122333444555566666788899778888886
No 77
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=34.95 E-value=57 Score=25.62 Aligned_cols=38 Identities=11% Similarity=0.091 Sum_probs=26.2
Q ss_pred HHHHHHhcCCcEEEEecCCChHHHHHHhcCCCCCEEEE
Q 038539 57 AVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~~pIiav 94 (181)
.++.....+.+.|++....|-.--..-.++-.+|.+-+
T Consensus 45 ~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 45 LAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 33444444699999999999984444445557888766
No 78
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=34.66 E-value=60 Score=23.71 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=37.1
Q ss_pred cCCcEEE-EecCCChHHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEe
Q 038539 64 IKAALIL-VLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVL 127 (181)
Q Consensus 64 ~~a~aIv-v~T~sG~ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~ 127 (181)
+++.+++ +-...|.+-..|-|-+|.+.|+.+ + +.-...+.|.=.||-+|.+
T Consensus 55 ~k~A~lv~v~~~~~~aI~~lrkIHPPAHIiVi------s-------~~~~~y~eL~~~~~~~p~l 106 (107)
T PF04009_consen 55 CKAAALVKVEEDATKAIDRLRKIHPPAHIIVI------S-------PRHDVYEELLEMFGKLPEL 106 (107)
T ss_pred cchheEEEecCCchhHHHHHhhcCCCceEEEE------C-------CCchHHHHHHHHhhhCccC
Confidence 3434333 345566777789999999999988 5 6668888888888877754
No 79
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=34.52 E-value=2.2e+02 Score=22.02 Aligned_cols=59 Identities=15% Similarity=0.172 Sum_probs=34.9
Q ss_pred HHHhcCCcEEEEec---C----CChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 60 TANCIKAALILVLT---R----GGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 60 ~A~~~~a~aIvv~T---~----sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
...+...+.+++-- . +|.. .+.+.+..|.+||+.+ |+ ..++.. ....+--|+.-++.+.
T Consensus 44 ~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~iIvl------s~-----~~~~~~-~~~a~~~Ga~~yl~K~ 110 (216)
T PRK10840 44 NLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVL------TM-----NNNPAI-LSAVLDLDIEGIVLKQ 110 (216)
T ss_pred HHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCcEEEE------Ee-----cCCHHH-HHHHHHCCCeEEEECC
Confidence 33445577666532 1 3433 4556666799999999 52 123333 3334667999888775
No 80
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=34.49 E-value=1.6e+02 Score=23.42 Aligned_cols=44 Identities=30% Similarity=0.229 Sum_probs=28.6
Q ss_pred CCh-HHHHHHhcCCCCCEEEEeecccccccccccCCC-hhhHhhhhccCCcEEEecCC
Q 038539 75 GGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSD-EAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 75 sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~-~~~ar~l~l~~GV~p~~~~~ 130 (181)
+|. ..+.+.+..|.+||+.+ |. .+ +....+..+--|+..++.+.
T Consensus 54 ~Gl~~~~~l~~~~p~~~iIvl------t~------~~~~~~~~~~~~~~Ga~gyl~K~ 99 (207)
T PRK11475 54 EGLSCLTELAIKFPRMRRLVI------AD------DDIEARLIGSLSPSPLDGVLSKA 99 (207)
T ss_pred CHHHHHHHHHHHCCCCCEEEE------eC------CCCHHHHHHHHHHcCCeEEEecC
Confidence 443 46778888999999999 52 23 33333333346888888765
No 81
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=34.18 E-value=1.4e+02 Score=22.67 Aligned_cols=30 Identities=20% Similarity=0.462 Sum_probs=22.8
Q ss_pred CCcEEEEecCCChHHHHHHhcC-------------CCCCEEEE
Q 038539 65 KAALILVLTRGGTTAKMVSKYR-------------PSMPILSV 94 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~iSk~R-------------P~~pIiav 94 (181)
.-..+|+.+.||.|..-++.+| ...+++++
T Consensus 73 ~~tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~vai 115 (158)
T cd05015 73 ETTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFVAI 115 (158)
T ss_pred ccEEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEEEE
Confidence 4578999999999876555333 57789999
No 82
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=34.14 E-value=2.5e+02 Score=23.29 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=31.6
Q ss_pred HHHHHHHHhcC--CcEEEEecCCChHHH----HHHhcCCCCCEEEE
Q 038539 55 SSAVRTANCIK--AALILVLTRGGTTAK----MVSKYRPSMPILSV 94 (181)
Q Consensus 55 ~aa~~~A~~~~--a~aIvv~T~sG~ta~----~iSk~RP~~pIiav 94 (181)
.-+.++.++++ .+.||+.+-+|.++. .+..++|...|+++
T Consensus 148 t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~V 193 (291)
T cd01561 148 TTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGV 193 (291)
T ss_pred HHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 44677777775 799999999999864 45566799999988
No 83
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.98 E-value=29 Score=29.59 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=26.9
Q ss_pred hcCCcEEEEecCCChHHHHHHhcC----CCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKYR----PSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~R----P~~pIiav 94 (181)
+..++.+|+-|.+|+||-.+|--- |.++.+.+
T Consensus 173 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~l 208 (292)
T PRK01911 173 SYWADGLIVATPTGSTGYSLSCGGPIIVPDAKSFVI 208 (292)
T ss_pred EEeeceeEECCCCcHHHHHhhCCCcccCCCCCEEEE
Confidence 457999999999999999999754 57777766
No 84
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=33.96 E-value=1.3e+02 Score=24.56 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=24.4
Q ss_pred CCcEEEEecCCChHHHHHHhcC-------CCCCEEEEeecccccccccccCCChhhHhhhh
Q 038539 65 KAALILVLTRGGTTAKMVSKYR-------PSMPILSVIVPEIKTDSIVWSCSDEAPATHSL 118 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~iSk~R-------P~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~ 118 (181)
+.++ |+|| |+++++.+.+.- ..+|++++ .+++++.+.
T Consensus 182 ~~d~-v~ft-S~~~~~~~~~~~~~~~~~~~~~~~~~i---------------g~~ta~a~~ 225 (255)
T PRK05752 182 RLNG-LVVS-SGQGFEHLQQLAGADWPELARLPLFVP---------------SPRVAEQAR 225 (255)
T ss_pred CCCE-EEEC-CHHHHHHHHHHhChhHHHhcCceEEEe---------------CHHHHHHHH
Confidence 4564 5566 888887765432 35778877 478877665
No 85
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=33.74 E-value=47 Score=28.26 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=26.9
Q ss_pred hcCCcEEEEecCCChHHHHHHhcC----CCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKYR----PSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~R----P~~pIiav 94 (181)
...++.+|+-|.+|+||-.+|--= |.++.+.+
T Consensus 173 ~~~gDGlIVsTPtGSTAYslSaGGPIv~p~~~~~~l 208 (291)
T PRK02155 173 NQRSDGLIVATPTGSTAYALSAGGPILHPQLPGWVL 208 (291)
T ss_pred EEecCeEEEECCCchhhhhhhcCCcccCCCCCeEEE
Confidence 457899999999999999999654 67777766
No 86
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=33.48 E-value=1.4e+02 Score=25.49 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHh----------cCCCCCEEEEeeccc
Q 038539 49 PLESLASSAVRTANCIKAALILVLTRGGTTAKMVSK----------YRPSMPILSVIVPEI 99 (181)
Q Consensus 49 ~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk----------~RP~~pIiav~~~~~ 99 (181)
+.......+++.+.+.++++||.+ .|-++.=++| ++|..|++++ |+.
T Consensus 62 p~~~~v~~~~~~~~~~~~d~Iiai--GGGs~~D~aKa~a~~~~~~~~~~~~p~i~V--PTt 118 (332)
T cd08180 62 PPIEVVAKGIKKFLDFKPDIVIAL--GGGSAIDAAKAIIYFAKKLGKKKKPLFIAI--PTT 118 (332)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEE--CCchHHHHHHHHHHHHhCCCCCCCCCEEEe--CCC
Confidence 334556667788888899999876 6655554444 5677899977 743
No 87
>PF09652 Cas_VVA1548: Putative CRISPR-associated protein (Cas_VVA1548); InterPro: IPR013443 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 95 amino acids found exclusively in species with CRISPR repeats. In all bacterial species that contain this entry, the genes encoding the proteins are in the midst of a cluster of cas genes.
Probab=33.32 E-value=45 Score=23.73 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=13.4
Q ss_pred HHHHHHHcCC-------------CCCCCEEEEE
Q 038539 147 ALQHAMAKGL-------------CRAGDSVVAL 166 (181)
Q Consensus 147 a~~~~~~~g~-------------~~~Gd~vvvv 166 (181)
|+++++++|+ +++||.|+-+
T Consensus 9 AieW~~~qg~~iD~~v~Hld~~~i~~GD~ViGt 41 (93)
T PF09652_consen 9 AIEWAKQQGIQIDHFVDHLDPADIQPGDVVIGT 41 (93)
T ss_pred HHHHHHHhCCCcceeeccCCHHHccCCCEEEEe
Confidence 6778888886 3467766644
No 88
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=33.29 E-value=68 Score=23.16 Aligned_cols=34 Identities=6% Similarity=-0.065 Sum_probs=26.4
Q ss_pred ecCCChHHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhh
Q 038539 72 LTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSL 118 (181)
Q Consensus 72 ~T~sG~ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~ 118 (181)
-+..|..+..+++..|.+.|++| . +++.....|.
T Consensus 6 Ga~~G~~~~~~~~~~~~~~v~~~-------E------~~~~~~~~l~ 39 (143)
T TIGR01444 6 GANIGDTSLYFARKGAEGRVIAF-------E------PLPDAYEILE 39 (143)
T ss_pred cCCccHHHHHHHHhCCCCEEEEE-------e------cCHHHHHHHH
Confidence 35688888899988888899999 4 7877765444
No 89
>PRK08197 threonine synthase; Validated
Probab=33.22 E-value=3.4e+02 Score=23.84 Aligned_cols=44 Identities=11% Similarity=0.079 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcC--CCCCEEEE
Q 038539 50 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYR--PSMPILSV 94 (181)
Q Consensus 50 ~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~R--P~~pIiav 94 (181)
.+-.+..++..|.+.+.+.||+.| +|.+++-+|.|- -..|.+.+
T Consensus 111 KdRga~~~i~~a~~~g~~~vv~aS-sGN~g~alA~~aa~~G~~~~v~ 156 (394)
T PRK08197 111 KARGLAVGVSRAKELGVKHLAMPT-NGNAGAAWAAYAARAGIRATIF 156 (394)
T ss_pred HHhHHHHHHHHHHHcCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEE
Confidence 444555666667777888777755 999998877552 34555544
No 90
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=32.81 E-value=65 Score=25.38 Aligned_cols=55 Identities=22% Similarity=0.226 Sum_probs=35.6
Q ss_pred CCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEE
Q 038539 87 PSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVAL 166 (181)
Q Consensus 87 P~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv 166 (181)
.+++|+++ .+.|++.|.-+ |+.+.+++... .+.+.+.+ .+.+ .+ .|+++++.
T Consensus 72 ~~~~i~av---------------G~~Ta~~l~~~-G~~~~~~~~~~-----~~s~~L~~----~l~~--~~-~~~~vl~~ 123 (231)
T PF02602_consen 72 KNIKIFAV---------------GPKTAEALREY-GFQPDFVPSSE-----GSSEGLAE----LLKE--QL-RGKRVLIL 123 (231)
T ss_dssp HHSEEEES---------------SHHHHHHHHHT-T-EECEE-TTS-----SSHHHHHG----GHHH--CC-TTEEEEEE
T ss_pred cCCeEEEE---------------cHHHHHHHHHc-CCCccccCCCC-----CCHHHHHH----HHHh--hC-CCCeEEEE
Confidence 47889988 68999998876 99997766521 45565433 2333 22 44789998
Q ss_pred eec
Q 038539 167 HRM 169 (181)
Q Consensus 167 ~g~ 169 (181)
.|.
T Consensus 124 ~g~ 126 (231)
T PF02602_consen 124 RGE 126 (231)
T ss_dssp ESS
T ss_pred cCC
Confidence 886
No 91
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=32.72 E-value=1e+02 Score=26.26 Aligned_cols=84 Identities=18% Similarity=0.103 Sum_probs=43.7
Q ss_pred EEEEecCCChHH--HHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhcc---------CCcEEEecCCCCCCCC
Q 038539 68 LILVLTRGGTTA--KMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIF---------RGLVPVLGSGSARASD 136 (181)
Q Consensus 68 aIvv~T~sG~ta--~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~---------~GV~p~~~~~~~~~~~ 136 (181)
.|+-.|-+|.|. ..|++.. +.+||.+ ++-.+.|.|.+. .|| |.+.-+.....-
T Consensus 3 ~i~G~t~~GKs~la~~l~~~~-~~~iis~--------------Ds~qvY~~l~IgTakp~~~e~~~v-~hhlid~~~~~~ 66 (287)
T TIGR00174 3 FIMGPTAVGKSQLAIQLAKKL-NAEIISV--------------DSMQIYKGMDIGTAKPSLQEREGI-PHHLIDILDPSE 66 (287)
T ss_pred EEECCCCCCHHHHHHHHHHhC-CCcEEEe--------------chhheeeeccccCCCCCHHHHcCc-cEEEEEEechhh
Confidence 466678999994 4677766 4677776 344445444432 133 433211110000
Q ss_pred ccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 038539 137 EESTEETIEFALQHAMAKGLCRAGDSVVALHRM 169 (181)
Q Consensus 137 ~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~g~ 169 (181)
.-+..+....+.+.+.+ +...|...|++.|.
T Consensus 67 ~~~v~~f~~~a~~~i~~--~~~~g~~pi~vGGT 97 (287)
T TIGR00174 67 SYSAADFQTLALNAIAD--ITARGKIPLLVGGT 97 (287)
T ss_pred eEcHHHHHHHHHHHHHH--HHhCCCCEEEEcCc
Confidence 12344444555444433 34456678888887
No 92
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=32.71 E-value=54 Score=23.21 Aligned_cols=29 Identities=17% Similarity=0.456 Sum_probs=22.6
Q ss_pred CCcEEEEecCCChHHHH-----HHhcCCCCCEEEE
Q 038539 65 KAALILVLTRGGTTAKM-----VSKYRPSMPILSV 94 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~-----iSk~RP~~pIiav 94 (181)
+-+.+|+++.+|.+... .+|.| .+||+++
T Consensus 46 ~~d~~I~iS~sG~t~e~~~~~~~a~~~-g~~vi~i 79 (126)
T cd05008 46 EDTLVIAISQSGETADTLAALRLAKEK-GAKTVAI 79 (126)
T ss_pred CCcEEEEEeCCcCCHHHHHHHHHHHHc-CCeEEEE
Confidence 45789999999998765 33444 5999999
No 93
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=32.65 E-value=76 Score=16.22 Aligned_cols=13 Identities=23% Similarity=0.324 Sum_probs=11.7
Q ss_pred CCCCCEEEEEeec
Q 038539 157 CRAGDSVVALHRM 169 (181)
Q Consensus 157 ~~~Gd~vvvv~g~ 169 (181)
+++||.|.++.|.
T Consensus 2 ~~~G~~V~I~~G~ 14 (28)
T smart00739 2 FEVGDTVRVIAGP 14 (28)
T ss_pred CCCCCEEEEeECC
Confidence 5789999999998
No 94
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=31.96 E-value=58 Score=25.00 Aligned_cols=29 Identities=17% Similarity=0.401 Sum_probs=23.2
Q ss_pred CCcEEEEecCCChHHHHH-----HhcCCCCCEEEE
Q 038539 65 KAALILVLTRGGTTAKMV-----SKYRPSMPILSV 94 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~i-----Sk~RP~~pIiav 94 (181)
+-+.+|++|.+|+|...+ +|.+ .+||+++
T Consensus 75 ~~D~vI~iS~sG~t~~~i~~~~~ak~~-g~~iI~I 108 (179)
T cd05005 75 PGDLLIAISGSGETSSVVNAAEKAKKA-GAKVVLI 108 (179)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHC-CCeEEEE
Confidence 457899999999997754 3444 7999999
No 95
>PLN03013 cysteine synthase
Probab=31.63 E-value=2.4e+02 Score=25.55 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=30.0
Q ss_pred HHHHHHHhc--CCcEEEEecCCChHH----HHHHhcCCCCCEEEE
Q 038539 56 SAVRTANCI--KAALILVLTRGGTTA----KMVSKYRPSMPILSV 94 (181)
Q Consensus 56 aa~~~A~~~--~a~aIvv~T~sG~ta----~~iSk~RP~~pIiav 94 (181)
.+.++.+++ +.++||+..-+|-+. +.+-+.+|++.|+++
T Consensus 269 tg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigV 313 (429)
T PLN03013 269 TGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGV 313 (429)
T ss_pred HHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEE
Confidence 445666666 489999999999775 455556799999998
No 96
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=31.29 E-value=1.4e+02 Score=23.44 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=36.8
Q ss_pred cCCcEEEEecCCChHHHHHHhc---------CCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCC
Q 038539 64 IKAALILVLTRGGTTAKMVSKY---------RPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARA 134 (181)
Q Consensus 64 ~~a~aIvv~T~sG~ta~~iSk~---------RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~ 134 (181)
.+.++|+ || |+.+++.+.+. ...++++++ .+.+++.|. -.|+.+.+.+..
T Consensus 176 ~~~d~iv-ft-S~~~v~~~~~~~~~~~~~~~~~~~~~~ai---------------G~~Ta~~l~-~~G~~~~~~~~~--- 234 (249)
T PRK05928 176 GEVDAVI-FT-SPSTVRAFFSLAPELGRREWLLSCKAVVI---------------GERTAEALR-ELGIKVIIVPDS--- 234 (249)
T ss_pred CCCCEEE-EC-CHHHHHHHHHHhcccchhHHHhCCeEEEe---------------CHHHHHHHH-HcCCCcceecCC---
Confidence 4677655 44 45555554432 236778887 588888776 457777776653
Q ss_pred CCccCHHHHHHHHH
Q 038539 135 SDEESTEETIEFAL 148 (181)
Q Consensus 135 ~~~~~~~~~i~~a~ 148 (181)
.+.+.+++...
T Consensus 235 ---~~~~~l~~~l~ 245 (249)
T PRK05928 235 ---ADNEALLRALK 245 (249)
T ss_pred ---CChHHHHHHHH
Confidence 45666555443
No 97
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=31.22 E-value=53 Score=23.22 Aligned_cols=30 Identities=17% Similarity=0.515 Sum_probs=22.5
Q ss_pred CCcEEEEecCCChHHHHHHhcC----CCCCEEEE
Q 038539 65 KAALILVLTRGGTTAKMVSKYR----PSMPILSV 94 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~iSk~R----P~~pIiav 94 (181)
+-+.+|+++.+|.+...+...+ -.+|++++
T Consensus 53 ~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~i 86 (131)
T PF01380_consen 53 PDDLVIIISYSGETRELIELLRFAKERGAPVILI 86 (131)
T ss_dssp TTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEE
T ss_pred ccceeEeeeccccchhhhhhhHHHHhcCCeEEEE
Confidence 3478999999999977644222 46999999
No 98
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=31.21 E-value=65 Score=23.05 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCcEEEEecCCChHHHHHHhcCCCCCEEEE
Q 038539 55 SSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 55 ~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~~pIiav 94 (181)
..|..+|.--...-|+++|.+-.++|+++-++--.|++.-
T Consensus 28 ~ta~~isk~RP~~pIiavt~~~~~~r~l~l~~GV~p~~~~ 67 (117)
T PF02887_consen 28 RTARLISKYRPKVPIIAVTPNESVARQLSLYWGVYPVLIE 67 (117)
T ss_dssp HHHHHHHHT-TSSEEEEEESSHHHHHHGGGSTTEEEEECS
T ss_pred hHHHHHHhhCCCCeEEEEcCcHHHHhhhhcccceEEEEec
Confidence 4566677666667799999999999999999988887644
No 99
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=31.07 E-value=3.4e+02 Score=23.19 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=29.2
Q ss_pred HHHHHHHh---c--CCcEEEEecCCChHHHHH----HhcCCCCCEEEE
Q 038539 56 SAVRTANC---I--KAALILVLTRGGTTAKMV----SKYRPSMPILSV 94 (181)
Q Consensus 56 aa~~~A~~---~--~a~aIvv~T~sG~ta~~i----Sk~RP~~pIiav 94 (181)
.+.++.++ + +.+.||+.+-+|.|+--+ ..++|...|+++
T Consensus 174 ~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV 221 (337)
T TIGR01274 174 FAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGI 221 (337)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEE
Confidence 34455555 2 589999999999996544 456788999998
No 100
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.01 E-value=41 Score=28.38 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=25.7
Q ss_pred cCCcEEEEecCCChHHHHHHhc----CCCCCEEEE
Q 038539 64 IKAALILVLTRGGTTAKMVSKY----RPSMPILSV 94 (181)
Q Consensus 64 ~~a~aIvv~T~sG~ta~~iSk~----RP~~pIiav 94 (181)
..++.+|+-|.+|+||-.+|-- -|.++.+.+
T Consensus 154 ~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~i 188 (272)
T PRK02231 154 QRSDGLIISTPTGSTAYSLSAGGPILTPNLNAIAL 188 (272)
T ss_pred EecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEE
Confidence 4789999999999999999974 456676666
No 101
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=30.89 E-value=63 Score=24.73 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=23.3
Q ss_pred CCcEEEEecCCChHHHHH-----HhcCCCCCEEEE
Q 038539 65 KAALILVLTRGGTTAKMV-----SKYRPSMPILSV 94 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~i-----Sk~RP~~pIiav 94 (181)
+-+.+|+++.+|.|...+ +|-| .+||+++
T Consensus 72 ~~Dv~I~iS~sG~t~~~i~~~~~ak~~-g~~ii~I 105 (179)
T TIGR03127 72 KGDLLIAISGSGETESLVTVAKKAKEI-GATVAAI 105 (179)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHC-CCeEEEE
Confidence 457899999999997654 4555 6999999
No 102
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=30.75 E-value=58 Score=23.38 Aligned_cols=29 Identities=10% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCcEEEEecCCChHHHH-----HHhcCCCCCEEEE
Q 038539 65 KAALILVLTRGGTTAKM-----VSKYRPSMPILSV 94 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~-----iSk~RP~~pIiav 94 (181)
+-+.+|++|.||.|... .+|-| .+||+++
T Consensus 47 ~~dl~I~iS~SG~t~~~~~~~~~a~~~-g~~vi~i 80 (120)
T cd05710 47 EKSVVILASHSGNTKETVAAAKFAKEK-GATVIGL 80 (120)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHc-CCeEEEE
Confidence 35789999999998665 34444 6899999
No 103
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=30.70 E-value=2.9e+02 Score=23.09 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcC--CcEEEEecCCChHHH----HHHhcCCCCCEEEE
Q 038539 54 ASSAVRTANCIK--AALILVLTRGGTTAK----MVSKYRPSMPILSV 94 (181)
Q Consensus 54 a~aa~~~A~~~~--a~aIvv~T~sG~ta~----~iSk~RP~~pIiav 94 (181)
...+.++.++++ .+.||+..-+|.++. .+..++|...|+++
T Consensus 150 ~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~V 196 (299)
T TIGR01136 150 KTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAV 196 (299)
T ss_pred HHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEE
Confidence 345567777774 899999999999874 45566799999988
No 104
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.64 E-value=42 Score=28.88 Aligned_cols=32 Identities=31% Similarity=0.280 Sum_probs=26.9
Q ss_pred hcCCcEEEEecCCChHHHHHHhcC----CCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKYR----PSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~R----P~~pIiav 94 (181)
+..++.+|+-|.+|+||-.+|--- |.++.+.+
T Consensus 182 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~i 217 (306)
T PRK03372 182 SFGCDGVLVSTPTGSTAYAFSAGGPVVWPDLEALLV 217 (306)
T ss_pred EEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEE
Confidence 457899999999999999999754 57777777
No 105
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=30.61 E-value=48 Score=21.90 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=8.5
Q ss_pred HHHHHcCCCCCCCEEEE
Q 038539 149 QHAMAKGLCRAGDSVVA 165 (181)
Q Consensus 149 ~~~~~~g~~~~Gd~vvv 165 (181)
+.|++.| +++||.|.+
T Consensus 47 ~~L~~~G-~~~GD~V~I 62 (69)
T PF09269_consen 47 KALRKAG-AKEGDTVRI 62 (69)
T ss_dssp HHHHTTT---TT-EEEE
T ss_pred HHHHHcC-CCCCCEEEE
Confidence 3455555 789999876
No 106
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=30.42 E-value=2.5e+02 Score=23.30 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=45.9
Q ss_pred CCcEEEEecCCChHHHHHHhc-----CCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccC
Q 038539 65 KAALILVLTRGGTTAKMVSKY-----RPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEES 139 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~iSk~-----RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~ 139 (181)
+.+.||.-+ .+..+.+..+ ....|++|| .+.|++-|.= +|..+.+.+.. .+
T Consensus 69 ~~d~iiftS--~NAV~~~~~~~~~~~~~~~~~~AV---------------G~~TA~aL~~-~G~~~~~~P~~------~~ 124 (266)
T PRK08811 69 AAPIVVFTS--PAAVRAAHRLLPLQRPARAHWLSV---------------GEGTARALQA-CGIDEVVRPTR------MD 124 (266)
T ss_pred cCCEEEEEC--HHHHHHHHHHhcccCccCCeEEEE---------------CHHHHHHHHH-cCCCceeCCCC------CC
Confidence 567655443 4444443332 246788999 5888888874 78888887653 34
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 038539 140 TEETIEFALQHAMAKGLCRAGDSVVALHRM 169 (181)
Q Consensus 140 ~~~~i~~a~~~~~~~g~~~~Gd~vvvv~g~ 169 (181)
.+.+++.- ... .+|++|+++.|.
T Consensus 125 se~Ll~l~---~~~----~~g~~vLi~rg~ 147 (266)
T PRK08811 125 SEGLLALP---LAQ----APLQAVGLITAP 147 (266)
T ss_pred cHHHHhCh---hhh----CCCCEEEEEeCC
Confidence 55544431 111 368899998877
No 107
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=30.26 E-value=58 Score=24.56 Aligned_cols=29 Identities=17% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCcEEEEecCCChHHHH-----HHhcCCCCCEEEE
Q 038539 65 KAALILVLTRGGTTAKM-----VSKYRPSMPILSV 94 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~-----iSk~RP~~pIiav 94 (181)
+-+.+|+++.||.|... .+|-| .+||+++
T Consensus 79 ~~D~~i~iS~sG~t~~~~~~~~~a~~~-g~~ii~i 112 (154)
T TIGR00441 79 KGDVLLGISTSGNSKNVLKAIEAAKDK-GMKTITL 112 (154)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHC-CCEEEEE
Confidence 45799999999998665 44555 7999999
No 108
>PRK08638 threonine dehydratase; Validated
Probab=29.98 E-value=3e+02 Score=23.63 Aligned_cols=74 Identities=12% Similarity=0.146 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhc-CCcEEEEecCCChHHHHHHhc----
Q 038539 11 YPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCI-KAALILVLTRGGTTAKMVSKY---- 85 (181)
Q Consensus 11 yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~-~a~aIvv~T~sG~ta~~iSk~---- 85 (181)
...++++.+.+++++- ..+ |-..|. .+. ..+.-..-+.++.+++ +.++||+..-+|.+..-++++
T Consensus 130 ~~~~~~~~a~~~a~~~-g~~-~~~~~~-------~~~-~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~ 199 (333)
T PRK08638 130 NFNDTIAKVEEIVEEE-GRT-FIPPYD-------DPK-VIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSI 199 (333)
T ss_pred CHHHHHHHHHHHHHhc-CCE-EcCcCC-------Ccc-hhccccHHHHHHHhhcCCCCEEEEEeChhHHHHHHHHHHHHh
Confidence 4567777777776652 221 111111 111 1122233445555555 479999999999997766654
Q ss_pred CCCCCEEEE
Q 038539 86 RPSMPILSV 94 (181)
Q Consensus 86 RP~~pIiav 94 (181)
.|...|+++
T Consensus 200 ~~~~~vigV 208 (333)
T PRK08638 200 NPTIHIIGV 208 (333)
T ss_pred CCCCEEEEE
Confidence 799999988
No 109
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=29.96 E-value=25 Score=28.53 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=16.9
Q ss_pred cCCCCCCCEEEEEeecCCCc
Q 038539 154 KGLCRAGDSVVALHRMHIAS 173 (181)
Q Consensus 154 ~g~~~~Gd~vvvv~g~g~tn 173 (181)
.|.+++||.|+.++|+|.|.
T Consensus 81 lg~i~~~DvviaiS~SGeT~ 100 (202)
T COG0794 81 LGMITPGDVVIAISGSGETK 100 (202)
T ss_pred ccCCCCCCEEEEEeCCCcHH
Confidence 57899999999999997654
No 110
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=29.50 E-value=1.9e+02 Score=22.63 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCcEEEEecCCChHHHHHHhcC-------CCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEE
Q 038539 54 ASSAVRTANCIKAALILVLTRGGTTAKMVSKYR-------PSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPV 126 (181)
Q Consensus 54 a~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~R-------P~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~ 126 (181)
.....+.-.+.+.++ |+|| |+.+++.+.+.- +.++++++ .+.+++.|. -.|+.+.
T Consensus 157 ~~~~~~~l~~~~~~~-v~ft-S~~~~~~~~~~~~~~~~~~~~~~~~~i---------------g~~ta~~l~-~~g~~~~ 218 (231)
T PF02602_consen 157 SPELKEALDRGEIDA-VVFT-SPSAVRAFLELLKKNGALLKRVPIVAI---------------GPRTAKALR-ELGFKVD 218 (231)
T ss_dssp HHHHHHHHHHTTTSE-EEES-SHHHHHHHHHHSSGHHHHHTTSEEEES---------------SHHHHHHHH-HTT-SCS
T ss_pred hHHHHHHHHcCCCCE-EEEC-CHHHHHHHHHHhHhhhhhhhCCEEEEE---------------CHHHHHHHH-HcCCCce
Confidence 334444444456675 4455 566666554443 36777777 699999887 6777775
Q ss_pred ecCC
Q 038539 127 LGSG 130 (181)
Q Consensus 127 ~~~~ 130 (181)
....
T Consensus 219 ~va~ 222 (231)
T PF02602_consen 219 IVAE 222 (231)
T ss_dssp EEES
T ss_pred EECC
Confidence 5444
No 111
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=29.48 E-value=2.2e+02 Score=23.17 Aligned_cols=80 Identities=16% Similarity=0.247 Sum_probs=45.4
Q ss_pred CCcEEEEecCCChHHH--HHHhcC---CCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccC
Q 038539 65 KAALILVLTRGGTTAK--MVSKYR---PSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEES 139 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~--~iSk~R---P~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~ 139 (181)
+.+.||.-+.+|--+. .+.... +.+|++|| .+.|++-|.- +|+.+.+.+.. .+
T Consensus 55 ~~d~iifTS~naV~~~~~~l~~~~~~~~~~~~~aV---------------G~~Ta~al~~-~G~~~~~~p~~------~~ 112 (255)
T PRK05752 55 RYCAVIVVSKPAARLGLELLDRYWPQPPQQPWFSV---------------GAATAAILQD-YGLDVSYPEQG------DD 112 (255)
T ss_pred CCCEEEEECHHHHHHHHHHHHhhCCCCcCCEEEEE---------------CHHHHHHHHH-cCCCcccCCCC------CC
Confidence 5677666555553331 122222 35889999 5888888764 48877665543 33
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 038539 140 TEETIEFALQHAMAKGLCRAGDSVVALHRM 169 (181)
Q Consensus 140 ~~~~i~~a~~~~~~~g~~~~Gd~vvvv~g~ 169 (181)
.+.+++.. .+.. -...+|++|+++.|.
T Consensus 113 se~Ll~~~--~l~~-~~~~~~~~vLi~rg~ 139 (255)
T PRK05752 113 SEALLALP--ALRQ-ALAVPDPRVLIMRGE 139 (255)
T ss_pred cHHHHhCh--hhhc-cccCCCCEEEEEccC
Confidence 44433211 0111 122478899999887
No 112
>PRK11175 universal stress protein UspE; Provisional
Probab=29.22 E-value=1.3e+02 Score=24.75 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCcEEEEecC---------CChHHHHHHhcCCCCCEEEE
Q 038539 54 ASSAVRTANCIKAALILVLTR---------GGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 54 a~aa~~~A~~~~a~aIvv~T~---------sG~ta~~iSk~RP~~pIiav 94 (181)
+....+.+++.+++.||+-|. -|+++..|.+.= +||++.+
T Consensus 250 ~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~-~~pVLvv 298 (305)
T PRK11175 250 EEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHL-NCDLLAI 298 (305)
T ss_pred HHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcC-CCCEEEE
Confidence 344557788889999998774 267888888544 5999977
No 113
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=29.22 E-value=3.2e+02 Score=22.42 Aligned_cols=39 Identities=5% Similarity=0.140 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCcEEEEecCCChHHHHHHhcCCCCCEEEE
Q 038539 56 SAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 56 aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~~pIiav 94 (181)
.+.+.-.+.++++||+.+.......+..-.+...|++.+
T Consensus 47 ~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~~iPvV~~ 85 (279)
T PF00532_consen 47 EYIELLLQRRVDGIILASSENDDEELRRLIKSGIPVVLI 85 (279)
T ss_dssp HHHHHHHHTTSSEEEEESSSCTCHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhcCCCEEEEecccCChHHHHHHHHcCCCEEEE
Confidence 566666777899999998877733322222237999988
No 114
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.15 E-value=45 Score=28.12 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=26.5
Q ss_pred hcCCcEEEEecCCChHHHHHHhcC----CCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKYR----PSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~R----P~~pIiav 94 (181)
...++.+|+-|.+|+||-.+|--= |.++.+.+
T Consensus 155 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~l 190 (271)
T PRK01185 155 TFKADGVIVATPTGSTSYSSSAGGPILLPNLEGMVI 190 (271)
T ss_pred EEEeeEEEEeCCCchHHHHhhCCCceeCCCCCeEEE
Confidence 457899999999999999999754 57777665
No 115
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=28.97 E-value=3e+02 Score=21.97 Aligned_cols=44 Identities=9% Similarity=-0.026 Sum_probs=27.5
Q ss_pred HhcCCcEEEEecCCChHHHHHHhc---------CCCCCEEEEeecccccccccccCCChhhHhhhhccCC
Q 038539 62 NCIKAALILVLTRGGTTAKMVSKY---------RPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRG 122 (181)
Q Consensus 62 ~~~~a~aIvv~T~sG~ta~~iSk~---------RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~G 122 (181)
.+.+.++|+.+ |+++++.+.+. ..+++++++ .++++..+.-.++
T Consensus 167 ~~~~~d~i~f~--S~~~~~~f~~~~~~~~~~~~l~~~~~v~I---------------g~~ta~al~~~~~ 219 (240)
T PRK09189 167 GGAPFDAVLLY--SRVAARRFFALMRLSIAPPADEKTRFLCL---------------SARVAAALPASLR 219 (240)
T ss_pred hcCCCCEEEEe--CHHHHHHHHHHHhhhcCcccccccCeEEe---------------CHHHHHHHhhccc
Confidence 34457766655 45677765432 245677777 5888888775544
No 116
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=28.92 E-value=50 Score=27.50 Aligned_cols=33 Identities=24% Similarity=0.212 Sum_probs=26.7
Q ss_pred HhcCCcEEEEecCCChHHHHHHhcC----CCCCEEEE
Q 038539 62 NCIKAALILVLTRGGTTAKMVSKYR----PSMPILSV 94 (181)
Q Consensus 62 ~~~~a~aIvv~T~sG~ta~~iSk~R----P~~pIiav 94 (181)
.+..++.+|+-|.+|+||-.+|--= |.++.+.+
T Consensus 130 ~~~~gDGlIVSTPtGSTAY~lSAGGPIv~P~~~~~~i 166 (246)
T PRK04761 130 EELVCDGVLVATPAGSTAYNLSAHGPILPLGSNLLAL 166 (246)
T ss_pred EEEecCeEEEeCCcCHHHHHhhCCCcccCCCCCeEEE
Confidence 3457899999999999999999654 56777766
No 117
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.84 E-value=54 Score=27.27 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=25.9
Q ss_pred hcCCcEEEEecCCChHHHHHHhcC----CCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKYR----PSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~R----P~~pIiav 94 (181)
...++.+|+-|.+|+||-.+|--= |.++.+.+
T Consensus 143 ~~~~DG~ivsTptGSTaY~lSaGGpiv~p~~~~l~I 178 (256)
T PRK14075 143 WFFADGVVISTPTGSTAYSLSLGGPIILPNCEVFEI 178 (256)
T ss_pred EEecCEEEEeCCCchHHHHhhCCCceeCCCCCeEEe
Confidence 356899999999999999999744 56666655
No 118
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.65 E-value=74 Score=27.08 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=26.1
Q ss_pred hcCCcEEEEecCCChHHHHHHhc----CCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKY----RPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~----RP~~pIiav 94 (181)
...++++|+-|.+|+||-.+|-- -|.++.+.+
T Consensus 173 ~~~~DGlIvsTptGSTAYslSAGGPii~P~~~~~~i 208 (292)
T PRK03378 173 SQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITL 208 (292)
T ss_pred EEEccEEEEeCCCchHHhHhhcCCceeCCCCCeEEE
Confidence 34689999999999999999954 467777766
No 119
>TIGR02620 cas_VVA1548 putative CRISPR-associated protein, VVA1548 family. This model represents a conserved domain of about 95 amino acids exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In all bacterial species with members so far (Vibrio vulnificus YJ016, Mannheimia succiniciproducens MBEL55E, and Nitrosomonas europaea ATCC 19718) and but not in the archaeon Methanothermobacter thermautotrophicus str. Delta H, the gene for this protein is in the midst of a cluster of Cas protein gene near CRISPR repeats.
Probab=28.38 E-value=59 Score=23.13 Aligned_cols=20 Identities=25% Similarity=0.425 Sum_probs=14.4
Q ss_pred HHHHHHHcCC-------------CCCCCEEEEE
Q 038539 147 ALQHAMAKGL-------------CRAGDSVVAL 166 (181)
Q Consensus 147 a~~~~~~~g~-------------~~~Gd~vvvv 166 (181)
|.++++++|+ +++||.|+-+
T Consensus 9 a~eW~~~qG~~iD~~v~HLd~~~i~~GD~ViGt 41 (93)
T TIGR02620 9 AQEWLSQQGIQIDHFVDHLDPIDISQGDKVIGT 41 (93)
T ss_pred HHHHHHhcCCccceeecccCHHHhcCCCEEEEe
Confidence 6678888887 5677777654
No 120
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=28.28 E-value=1.1e+02 Score=26.49 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=38.0
Q ss_pred HhcCCcEEEEecCCChHHHHHHhc----CCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEE
Q 038539 62 NCIKAALILVLTRGGTTAKMVSKY----RPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVP 125 (181)
Q Consensus 62 ~~~~a~aIvv~T~sG~ta~~iSk~----RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p 125 (181)
..++++-||+.+-|.+||+-++.. ++...+|++ |+ ..|..-.+.|.+|--|..
T Consensus 132 ~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vgl------TS-----~~N~~Fve~lg~Yd~V~~ 188 (314)
T PF11017_consen 132 DFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGL------TS-----ARNVAFVESLGCYDEVLT 188 (314)
T ss_pred ccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEE------ec-----CcchhhhhccCCceEEee
Confidence 357899999999999999977754 889999999 62 234444555555554443
No 121
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.74 E-value=53 Score=24.42 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHH-hcCCcEEE-EecCCChHHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEE
Q 038539 49 PLESLASSAVRTAN-CIKAALIL-VLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPV 126 (181)
Q Consensus 49 ~~~aia~aa~~~A~-~~~a~aIv-v~T~sG~ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~ 126 (181)
..|.+..+.+--.. ++++.+.+ +--.-+..-.+|.+-.|.+.|+.+ + +.-.+.+.|.=.||-+|.
T Consensus 40 ~aD~~~~~ilGe~R~k~~~aa~a~v~~~a~~aI~rIr~IHPPAHiIVI------s-------~r~dvy~el~~~fgkl~e 106 (125)
T COG1844 40 LADEILSSILGEVRKKCKVAAVAEVEEPASKAIGRIRKIHPPAHIIVI------S-------PRHDVYKELLRLFGKLPE 106 (125)
T ss_pred hHHHHHHHHHHHHhcccchhheeeecCccHHHHHHHHhcCCCceEEEe------C-------CCchHHHHHHHHhcccHh
Confidence 34555554444332 33444333 334455666788899999999988 4 555888888888888887
Q ss_pred ecC
Q 038539 127 LGS 129 (181)
Q Consensus 127 ~~~ 129 (181)
|-.
T Consensus 107 lkg 109 (125)
T COG1844 107 LKG 109 (125)
T ss_pred hcc
Confidence 643
No 122
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=27.71 E-value=1.4e+02 Score=25.89 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=20.5
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEEeec
Q 038539 144 IEFALQHAMAKGLCRAGDSVVALHRM 169 (181)
Q Consensus 144 i~~a~~~~~~~g~~~~Gd~vvvv~g~ 169 (181)
+-.++..++++|.+++||.|++..+-
T Consensus 339 ipi~L~~a~~~g~~~~Gd~vl~~~~~ 364 (378)
T PRK06816 339 IYIMLDELLNSGRLKPGQKILCFVPE 364 (378)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEEec
Confidence 33566778899999999999988543
No 123
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=27.54 E-value=94 Score=21.84 Aligned_cols=29 Identities=17% Similarity=0.426 Sum_probs=22.0
Q ss_pred CCcEEEEecCCChHHHHH-----HhcCCCCCEEEE
Q 038539 65 KAALILVLTRGGTTAKMV-----SKYRPSMPILSV 94 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~i-----Sk~RP~~pIiav 94 (181)
.-+.+|+++.+|.+...+ +|-| .++|+++
T Consensus 60 ~~~~~i~iS~~g~~~~~~~~~~~a~~~-g~~iv~i 93 (139)
T cd05013 60 PGDVVIAISFSGETKETVEAAEIAKER-GAKVIAI 93 (139)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHc-CCeEEEE
Confidence 457899999999976542 4444 6899999
No 124
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=27.42 E-value=3e+02 Score=21.50 Aligned_cols=62 Identities=18% Similarity=0.109 Sum_probs=37.1
Q ss_pred HHHHHHhcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 57 AVRTANCIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
+.+...+...+.|++-- .+|.. .+.+.+..|.+||+.+ |+ ..+..... -.+--|+..++.+.
T Consensus 42 al~~~~~~~pdlvllD~~mp~~~gle~~~~l~~~~~~~~iivl------s~-----~~~~~~~~-~al~~Ga~~yl~Kp 108 (225)
T PRK10046 42 ARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFT------TA-----ASDMETVS-EAVRCGVFDYLIKP 108 (225)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE------Ec-----CCCHHHHH-HHHHcCccEEEECC
Confidence 34444555678766642 34443 5566666788999988 52 13333333 34567888888775
No 125
>PF01634 HisG: ATP phosphoribosyltransferase; InterPro: IPR013820 ATP phosphoribosyltransferase (2.4.2.17 from EC) is the enzyme that catalyzes the first step in the biosynthesis of histidine in bacteria, fungi and plants as shown below. It is a member of the larger phosphoribosyltransferase superfamily of enzymes which catalyse the condensation of 5-phospho-alpha-D-ribose 1-diphosphate with nitrogenous bases in the presence of divalent metal ions []. ATP + 5-phospho-alpha-D-ribose 1-diphosphate = 1-(5-phospho-D-ribosyl)-ATP + diphosphate Histidine biosynthesis is an energetically expensive process and ATP phosphoribosyltransferase activity is subject to control at several levels. Transcriptional regulation is based primarily on nutrient conditions and determines the amount of enzyme present in the cell, while feedback inihibition rapidly modulates activity in response to cellular conditions. The enzyme has been shown to be inhibited by 1-(5-phospho-D-ribosyl)-ATP, histidine, ppGpp (a signal associated with adverse environmental conditions) and ADP and AMP (which reflect the overall energy status of the cell). As this pathway of histidine biosynthesis is present only in prokayrotes, plants and fungi, this enzyme is a promising target for the development of novel antimicrobial compounds and herbicides. ATP phosphoribosyltransferase is found in two distinct forms: a long form containing two catalytic domains and a C-terminal regulatory domain, and a short form in which the regulatory domain is missing. The long form is catalytically competent, but in organisms with the short form, a histidyl-tRNA synthetase paralogue, HisZ, is required for enzyme activity []. This entry represents the catalytic region of this enzyme. The structures of the long form enzymes from Escherichia coli (P60757 from SWISSPROT) and Mycobacterium tuberculosis (P60759 from SWISSPROT) have been determined [, ]. The enzyme itself exists in equilibrium between an active dimeric form, an inactive hexameric form and higher aggregates. Interconversion between the various forms is largely reversible and is influenced by the binding of the natural substrates and inhibitors of the enzyme. The two catalytic domains are linked by a two-stranded beta-sheet and togther form a "periplasmic binding protein fold". A crevice between these domains contains the active site. The C-terminal domain is not directly involved in catalysis but appears to be involved the formation of hexamers, induced by the binding of inhibitors such as histidine to the enzyme, thus regulating activity.; GO: 0003879 ATP phosphoribosyltransferase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm; PDB: 1VE4_A 2VD3_B 1NH7_A 1NH8_A 1Z7N_G 1Z7M_E 1O64_A 1O63_A 1USY_F 1Q1K_A ....
Probab=27.23 E-value=43 Score=26.13 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=22.3
Q ss_pred HHHHHHHHhcC-CcEEEEecCCChHHHH
Q 038539 55 SSAVRTANCIK-AALILVLTRGGTTAKM 81 (181)
Q Consensus 55 ~aa~~~A~~~~-a~aIvv~T~sG~ta~~ 81 (181)
.+++++|-.++ |++|+=.|.||+|-+.
T Consensus 95 ~GsvE~ap~~glAD~IvDiv~TG~TLr~ 122 (163)
T PF01634_consen 95 SGSVELAPPLGLADAIVDIVETGTTLRA 122 (163)
T ss_dssp SS-TTHHHHTTSSSEEEEEESSSHHHHH
T ss_pred cCCccccCCCCCCCEEEEeccCcHHHHH
Confidence 45678888888 9999999999999764
No 126
>PRK10116 universal stress protein UspC; Provisional
Probab=27.16 E-value=2.1e+02 Score=20.36 Aligned_cols=41 Identities=7% Similarity=0.074 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCCcEEEEecCCCh-HHHHHH-----hcCCCCCEEEE
Q 038539 54 ASSAVRTANCIKAALILVLTRGGT-TAKMVS-----KYRPSMPILSV 94 (181)
Q Consensus 54 a~aa~~~A~~~~a~aIvv~T~sG~-ta~~iS-----k~RP~~pIiav 94 (181)
.....+.+++.+++.||+-|+.-. ..+.+| =.+.+|||+.+
T Consensus 91 ~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~s~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 91 SEHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLV 137 (142)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 345667788889998888666422 122222 13568999976
No 127
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=27.06 E-value=3.7e+02 Score=22.43 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=31.3
Q ss_pred HHHHHHHHhcC--CcEEEEecCCChHHH----HHHhcCCCCCEEEE
Q 038539 55 SSAVRTANCIK--AALILVLTRGGTTAK----MVSKYRPSMPILSV 94 (181)
Q Consensus 55 ~aa~~~A~~~~--a~aIvv~T~sG~ta~----~iSk~RP~~pIiav 94 (181)
.-+.++.++++ .++||+..-+|.|+. .+..+.|...|+++
T Consensus 151 t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~V 196 (290)
T TIGR01138 151 STGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGL 196 (290)
T ss_pred hHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 35567777774 799999999998864 45556899999998
No 128
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=26.98 E-value=2.9e+02 Score=23.01 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcCCCC-CEEEEeecccccccccccCCChhhHhhhhccCCcEEEec
Q 038539 50 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSM-PILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLG 128 (181)
Q Consensus 50 ~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~~-pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~ 128 (181)
.+.||..|.++-.+ -+. +|=.+|.|...++++=|.. ++-.+ | ++..++..|.-.-++.-++.
T Consensus 93 K~~IA~~Aa~~I~d--gd~--Ifld~GtT~~~la~~L~~~~~ltVv------T-------nsl~ia~~l~~~~~~~v~ll 155 (269)
T PRK09802 93 KRSVAKAAVELIQP--GHR--VILDSGTTTFEIARLMRKHTDVIAM------T-------NGMNVANALLEAEGVELLMT 155 (269)
T ss_pred HHHHHHHHHhhCCC--CCE--EEECCchHHHHHHHhcCcCCCeEEE------e-------CCHHHHHHHHhCCCCEEEEE
Confidence 45677776665433 343 3456899999999988764 57766 5 88888888876666655544
Q ss_pred C
Q 038539 129 S 129 (181)
Q Consensus 129 ~ 129 (181)
.
T Consensus 156 G 156 (269)
T PRK09802 156 G 156 (269)
T ss_pred C
Confidence 3
No 129
>PRK09750 hypothetical protein; Provisional
Probab=26.98 E-value=24 Score=23.09 Aligned_cols=10 Identities=60% Similarity=0.916 Sum_probs=8.4
Q ss_pred CCCccccCCC
Q 038539 1 MLSGETAAGA 10 (181)
Q Consensus 1 MLSgETA~G~ 10 (181)
|||||+-.|+
T Consensus 36 ~~s~~kEAGk 45 (64)
T PRK09750 36 MLSGKKEAGV 45 (64)
T ss_pred HhccccccCc
Confidence 7888888886
No 130
>PRK06260 threonine synthase; Validated
Probab=26.56 E-value=4.4e+02 Score=23.11 Aligned_cols=44 Identities=14% Similarity=0.182 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhc--CCCCCEEEE
Q 038539 50 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKY--RPSMPILSV 94 (181)
Q Consensus 50 ~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~--RP~~pIiav 94 (181)
.+-.+..++..|.+.+.+.||+ ..+|.++.-+|.| +...|.+.+
T Consensus 99 KdRga~~~v~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~i~ 144 (397)
T PRK06260 99 KDRGMTVGVTKALELGVKTVAC-ASTGNTSASLAAYAARAGLKCYVL 144 (397)
T ss_pred HHHHHHHHHHHHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEE
Confidence 3444455566677778876554 6899998877655 356776665
No 131
>PLN02727 NAD kinase
Probab=26.19 E-value=74 Score=31.77 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=27.5
Q ss_pred hcCCcEEEEecCCChHHHHHHhc----CCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKY----RPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~----RP~~pIiav 94 (181)
...++++||-|.||.||-.+|-- .|.++.|.+
T Consensus 860 tyrgDGLIVSTPTGSTAYSLSAGGPIVhP~v~aIvI 895 (986)
T PLN02727 860 KVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLF 895 (986)
T ss_pred EeecceEEEECCCchHHhHhhcCCceeCCCCCeEEE
Confidence 45799999999999999999974 578888877
No 132
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=26.17 E-value=3.9e+02 Score=22.36 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCcEEEEe-cCCCh--HHHHHHhcCCC--CCEEEEeecccccccccccCCChhhHhhhhccCCcEEE
Q 038539 53 LASSAVRTANCIKAALILVL-TRGGT--TAKMVSKYRPS--MPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPV 126 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~-T~sG~--ta~~iSk~RP~--~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~ 126 (181)
+...+...++...++++|+- +.+|. ....|.+.|-. .|||.- ++. .-+.+..+|...-|++--
T Consensus 160 ~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PVlvG----SGv-------t~~Ni~~~l~~ADG~IVG 227 (254)
T PF03437_consen 160 LEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPVLVG----SGV-------TPENIAEYLSYADGAIVG 227 (254)
T ss_pred HHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCEEEe----cCC-------CHHHHHHHHHhCCEEEEe
Confidence 44445555567789988762 22233 23344444422 777765 333 567778888899998763
No 133
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=26.06 E-value=2.5e+02 Score=21.48 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=26.1
Q ss_pred CCcEEEEecCCChHHHHHHhcCCCCCEEEE
Q 038539 65 KAALILVLTRGGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~iSk~RP~~pIiav 94 (181)
+...+=+.+-+|..+..+++..|...|+++
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~v 61 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAI 61 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEE
Confidence 456677889999999999999999999999
No 134
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=26.05 E-value=2.2e+02 Score=24.75 Aligned_cols=48 Identities=25% Similarity=0.529 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEecCCChH----HHHHHh-----------------cCCCCCEEEEeecccc
Q 038539 49 PLESLASSAVRTANCIKAALILVLTRGGTT----AKMVSK-----------------YRPSMPILSVIVPEIK 100 (181)
Q Consensus 49 ~~~aia~aa~~~A~~~~a~aIvv~T~sG~t----a~~iSk-----------------~RP~~pIiav~~~~~~ 100 (181)
+.......+++.+.+.+++.||.+ .|-+ |+.++- +++..|+++| |+..
T Consensus 64 p~~~~v~~~~~~~~~~~~D~IIai--GGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~I--PTta 132 (375)
T cd08194 64 PTDESVEEGVKLAKEGGCDVIIAL--GGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAI--PTTA 132 (375)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEe--CCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEE--CCCC
Confidence 444556667778888899999977 5644 444442 5678999977 7443
No 135
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=26.00 E-value=43 Score=28.10 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=25.5
Q ss_pred hcCCcEEEEecCCChHHHHHHh----cCCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk----~RP~~pIiav 94 (181)
+..++.+++.|.+|+||-.+|. ..|..+.+.+
T Consensus 188 ~~~~dGlivsTptGSTay~lSaGGpiv~p~~~~~~~ 223 (285)
T PF01513_consen 188 TYRGDGLIVSTPTGSTAYSLSAGGPIVHPGLDVIIL 223 (285)
T ss_dssp EEEESEEEEEETGGGGTHHHHTT--EE-TTSSEEEE
T ss_pred EEEEeeeEEEecCCceEEEEecCccEeccCcceeEE
Confidence 4678999999999999999996 4466776554
No 136
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=25.98 E-value=4.2e+02 Score=22.59 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=28.6
Q ss_pred HHHHHHh---c--CCcEEEEecCCChHHHHH----HhcCCCCCEEEE
Q 038539 57 AVRTANC---I--KAALILVLTRGGTTAKMV----SKYRPSMPILSV 94 (181)
Q Consensus 57 a~~~A~~---~--~a~aIvv~T~sG~ta~~i----Sk~RP~~pIiav 94 (181)
+.++.++ + +.+.||+.+-+|.|+--+ ...+|...|+++
T Consensus 176 a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV 222 (337)
T PRK12390 176 AEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGI 222 (337)
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEE
Confidence 4555554 3 479999999999996644 445788999999
No 137
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=25.95 E-value=1.7e+02 Score=24.14 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcCCCC-CEEEEeecccccccccccCCChhhHhhhhc
Q 038539 50 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSM-PILSVIVPEIKTDSIVWSCSDEAPATHSLI 119 (181)
Q Consensus 50 ~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~~-pIiav~~~~~~t~~~~~~~~~~~~ar~l~l 119 (181)
.+.||..|.++-.+ -+ .+|=.+|.|...++++=|.. ++-.+ | ++..++..|.-
T Consensus 78 K~~IA~~Aa~~I~~--g~--tIfld~GtT~~~la~~L~~~~~ltVv------T-------nsl~ia~~l~~ 131 (256)
T PRK10434 78 KELIAEAAVSLIHD--GD--SIILDAGSTVLQMVPLLSRFNNITVM------T-------NSLHIVNALSE 131 (256)
T ss_pred HHHHHHHHHhhCCC--CC--EEEEcCcHHHHHHHHHhccCCCeEEE------E-------CCHHHHHHHhh
Confidence 46777776665532 23 44567899999999888765 56666 5 88888877764
No 138
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=25.48 E-value=2.7e+02 Score=24.31 Aligned_cols=90 Identities=21% Similarity=0.273 Sum_probs=48.4
Q ss_pred HHHHHHHhcC---CcEEEEecCCChHHHHHHhcCCCCCEEEEeeccccccccccc--------------CCCh-hhHhhh
Q 038539 56 SAVRTANCIK---AALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWS--------------CSDE-APATHS 117 (181)
Q Consensus 56 aa~~~A~~~~---a~aIvv~T~sG~ta~~iSk~RP~~pIiav~~~~~~t~~~~~~--------------~~~~-~~ar~l 117 (181)
.+.++|+++. .+.|+ +-.+-.|+.+.+.=-+.||+---+ ||+..|. .+|. -+.+|+
T Consensus 76 ~a~~iarql~~~~~dviv--~i~tp~Aq~~~s~~~~iPVV~aav----td~v~a~Lv~~~~~pg~NvTGvsD~~~v~q~i 149 (322)
T COG2984 76 TAAQIARQLVGDKPDVIV--AIATPAAQALVSATKTIPVVFAAV----TDPVGAKLVKSLEQPGGNVTGVSDLLPVAQQI 149 (322)
T ss_pred HHHHHHHHhhcCCCcEEE--ecCCHHHHHHHHhcCCCCEEEEcc----CchhhccCCccccCCCCceeecCCcchHHHHH
Confidence 3445555553 23333 334555664444444578773322 4555444 1333 378888
Q ss_pred hccCCcEE----E--ecCCCCCCCCccCHHHHHHHHHHHHHHcCC
Q 038539 118 LIFRGLVP----V--LGSGSARASDEESTEETIEFALQHAMAKGL 156 (181)
Q Consensus 118 ~l~~GV~p----~--~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~ 156 (181)
.|..-+.| + ++... ..+....++.-.+.+++.|+
T Consensus 150 ~lik~~~Pnak~Igv~Y~p~-----E~ns~~l~eelk~~A~~~Gl 189 (322)
T COG2984 150 ELIKALLPNAKSIGVLYNPG-----EANSVSLVEELKKEARKAGL 189 (322)
T ss_pred HHHHHhCCCCeeEEEEeCCC-----CcccHHHHHHHHHHHHHCCC
Confidence 85554444 2 33322 14556677777788888887
No 139
>PRK06381 threonine synthase; Validated
Probab=25.21 E-value=4.1e+02 Score=22.31 Aligned_cols=45 Identities=16% Similarity=0.139 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhc--CCCCCEEEE
Q 038539 49 PLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKY--RPSMPILSV 94 (181)
Q Consensus 49 ~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~--RP~~pIiav 94 (181)
..+-.+...+..|.+.+.+-||+ ..+|.+++-+|.+ +-..|.+.+
T Consensus 46 ~K~R~a~~~l~~a~~~g~~~lv~-aSsGN~g~alA~~aa~~G~~~~iv 92 (319)
T PRK06381 46 QKDRIAEAHVRRAMRLGYSGITV-GTCGNYGASIAYFARLYGLKAVIF 92 (319)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEE-eCCcHHHHHHHHHHHHcCCcEEEE
Confidence 34445566677777778887766 4589998776643 234555544
No 140
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=25.03 E-value=93 Score=27.04 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEEe
Q 038539 144 IEFALQHAMAKGLCRAGDSVVALH 167 (181)
Q Consensus 144 i~~a~~~~~~~g~~~~Gd~vvvv~ 167 (181)
+-.++..+.+.|.+++||.+++..
T Consensus 285 iplaL~~~~~~g~ik~Gd~ill~~ 308 (323)
T COG0332 285 IPLALDEALREGRIKPGDLVLLEA 308 (323)
T ss_pred HHHHHHHHhhhCCCCCCCEEEEEe
Confidence 446888899999999999888653
No 141
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=24.74 E-value=3.1e+02 Score=22.79 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=19.1
Q ss_pred CcEEEEecCCChHHHH--HHhcCCCCCEEEE
Q 038539 66 AALILVLTRGGTTAKM--VSKYRPSMPILSV 94 (181)
Q Consensus 66 a~aIvv~T~sG~ta~~--iSk~RP~~pIiav 94 (181)
.-+|+=.|-+|.|++. +|+.. ..|||+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~-g~pvI~~ 32 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKT-GAPVISL 32 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH---EEEEE
T ss_pred EEEEECCCCCChhHHHHHHHHHh-CCCEEEe
Confidence 3468888999999875 44444 8999998
No 142
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=24.70 E-value=2.4e+02 Score=23.11 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCChH-HHHHHhcCCCCCEEEE
Q 038539 50 LESLASSAVRTANCIKAALILVLTRGGTT-AKMVSKYRPSMPILSV 94 (181)
Q Consensus 50 ~~aia~aa~~~A~~~~a~aIvv~T~sG~t-a~~iSk~RP~~pIiav 94 (181)
.+++...+.++..+-+++.||+++..|.. .+.+++.-|...++.-
T Consensus 168 ~~~~~~~~~~~~~~~~~D~iI~l~H~g~~~~~~la~~~~~iDlilg 213 (264)
T cd07411 168 EEELQEVVVKLRREEGVDVVVLLSHNGLPVDVELAERVPGIDVILS 213 (264)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEecCCchhhHHHHhcCCCCcEEEe
Confidence 44444444555555689999999999974 4566666677777633
No 143
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=24.67 E-value=1.9e+02 Score=24.82 Aligned_cols=26 Identities=31% Similarity=0.257 Sum_probs=18.4
Q ss_pred EEEEecCCChH--HHHHHhcCCCCCEEEE
Q 038539 68 LILVLTRGGTT--AKMVSKYRPSMPILSV 94 (181)
Q Consensus 68 aIvv~T~sG~t--a~~iSk~RP~~pIiav 94 (181)
+|+-.|-+|.| |..|++.. +++||..
T Consensus 8 ~i~GptgsGKt~la~~la~~~-~~~iis~ 35 (307)
T PRK00091 8 VIVGPTASGKTALAIELAKRL-NGEIISA 35 (307)
T ss_pred EEECCCCcCHHHHHHHHHHhC-CCcEEec
Confidence 45557888998 55677765 5788766
No 144
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=24.38 E-value=3.5e+02 Score=23.42 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=32.8
Q ss_pred CCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEE
Q 038539 87 PSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVAL 166 (181)
Q Consensus 87 P~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv 166 (181)
..++|+|+ .+.|++-|. -+|+.|.+.+.. .+.+.+++.. ..+ ..+|.+|++.
T Consensus 97 ~~~~i~aV---------------G~~Ta~aL~-~~G~~~~~~p~~------~~~e~L~~~l----~~~--~~~g~~vli~ 148 (381)
T PRK07239 97 SSARLLAR---------------GPKATGAIR-AAGLREEWSPAS------ESSAEVLEYL----LEE--GVAGKRIAVQ 148 (381)
T ss_pred cCCeEEEE---------------CccHHHHHH-HcCCCCccCCCC------CccHHHHHHH----hcC--CCCCCEEEEE
Confidence 46889998 477777776 568888777653 3445444332 221 2467887775
No 145
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=23.70 E-value=1.1e+02 Score=19.95 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=15.1
Q ss_pred HHHHH-HcCCCCCCCEEEEE
Q 038539 148 LQHAM-AKGLCRAGDSVVAL 166 (181)
Q Consensus 148 ~~~~~-~~g~~~~Gd~vvvv 166 (181)
-+.|+ +.|+.+||+.|..+
T Consensus 58 e~~AR~~lgm~~~~E~v~~~ 77 (80)
T PF04977_consen 58 EKVAREKLGMVKPGEIVFKI 77 (80)
T ss_pred HHHHHHHcCCcCCCCEEEeC
Confidence 45667 88999999998764
No 146
>PRK11761 cysM cysteine synthase B; Provisional
Probab=23.60 E-value=1.6e+02 Score=24.82 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=30.1
Q ss_pred HHHHHHhcC--CcEEEEecCCChHH----HHHHhcCCCCCEEEE
Q 038539 57 AVRTANCIK--AALILVLTRGGTTA----KMVSKYRPSMPILSV 94 (181)
Q Consensus 57 a~~~A~~~~--a~aIvv~T~sG~ta----~~iSk~RP~~pIiav 94 (181)
+.++.++++ .++||+..-+|.+. +.+..++|...|+++
T Consensus 157 ~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigV 200 (296)
T PRK11761 157 GPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGL 200 (296)
T ss_pred HHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEE
Confidence 456666663 79999999999775 566677899999998
No 147
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=23.50 E-value=4.8e+02 Score=22.47 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=30.1
Q ss_pred HHHHHHHhcC--CcEEEEecCCChH----HHHHHhcCCCCCEEEE
Q 038539 56 SAVRTANCIK--AALILVLTRGGTT----AKMVSKYRPSMPILSV 94 (181)
Q Consensus 56 aa~~~A~~~~--a~aIvv~T~sG~t----a~~iSk~RP~~pIiav 94 (181)
.+-++-++++ .+++|+-.-||-| ++.|-...|++.|+++
T Consensus 158 T~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~v 202 (300)
T COG0031 158 TGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAV 202 (300)
T ss_pred hHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEE
Confidence 3455555554 8999999999987 5566667899999998
No 148
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=23.50 E-value=1.1e+02 Score=25.11 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=22.3
Q ss_pred CCcEEEEecCCChHHHH-----HHhcCCCCCEEEE
Q 038539 65 KAALILVLTRGGTTAKM-----VSKYRPSMPILSV 94 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~-----iSk~RP~~pIiav 94 (181)
.-+.+|+++.+|.+... .+|-| .+||+++
T Consensus 175 ~~Dv~I~iS~sg~~~~~~~~~~~ak~~-ga~iI~I 208 (278)
T PRK11557 175 PDDLLLAISYSGERRELNLAADEALRV-GAKVLAI 208 (278)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHc-CCCEEEE
Confidence 45789999999988743 33444 7999999
No 149
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=23.31 E-value=3.1e+02 Score=22.55 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcCCCC-CEEEEeecccccccccccCCChhhHhhhhccCCcEEEec
Q 038539 50 LESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSM-PILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLG 128 (181)
Q Consensus 50 ~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~~-pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~ 128 (181)
.+.||..|+..-.+ -+ .+|=.+|.|...++++=|.. ++-.+ | ++..++..|.-..++.-++.
T Consensus 78 K~~IA~~Aa~~I~~--g~--tIflD~GtT~~~la~~L~~~~~ltVv------T-------Nsl~ia~~l~~~~~~~vill 140 (252)
T PRK10906 78 KERIARKVASQIPN--GA--TLFIDIGTTPEAVAHALLNHSNLRIV------T-------NNLNVANTLMAKEDFRIILA 140 (252)
T ss_pred HHHHHHHHHhhCCC--CC--EEEEcCcHHHHHHHHHhcCCCCcEEE------E-------CcHHHHHHHhhCCCCEEEEE
Confidence 45677776665543 33 33456888988888888763 56666 5 88888888876666655544
Q ss_pred C
Q 038539 129 S 129 (181)
Q Consensus 129 ~ 129 (181)
.
T Consensus 141 G 141 (252)
T PRK10906 141 G 141 (252)
T ss_pred C
Confidence 3
No 150
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=23.01 E-value=4.2e+02 Score=21.63 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=27.8
Q ss_pred HHHHhcCCcEEEEecCCCh------HHHHHHhcCCCCCEEEE
Q 038539 59 RTANCIKAALILVLTRGGT------TAKMVSKYRPSMPILSV 94 (181)
Q Consensus 59 ~~A~~~~a~aIvv~T~sG~------ta~~iSk~RP~~pIiav 94 (181)
+.+.+.++++|++=-.+|- +.+++.+.+...||+-+
T Consensus 19 ~~~~~~gtdai~vGGS~~v~~~~~~~~~~ik~~~~~~Pvilf 60 (219)
T cd02812 19 KLAEESGTDAIMVGGSDGVSSTLDNVVRLIKRIRRPVPVILF 60 (219)
T ss_pred HHHHhcCCCEEEECCccchhhhHHHHHHHHHHhcCCCCEEEe
Confidence 4455578999999888877 56778888866898855
No 151
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.93 E-value=1.5e+02 Score=22.87 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=20.3
Q ss_pred hcCCcEEEEecCCChHHHHHHhcCCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~RP~~pIiav 94 (181)
+-+++.||. .|.||.+|.+.- +.||+-+
T Consensus 32 ~~g~dViIs---RG~ta~~lr~~~-~iPVV~I 59 (176)
T PF06506_consen 32 SEGADVIIS---RGGTAELLRKHV-SIPVVEI 59 (176)
T ss_dssp TTT-SEEEE---EHHHHHHHHCC--SS-EEEE
T ss_pred hcCCeEEEE---CCHHHHHHHHhC-CCCEEEE
Confidence 346887776 788999999887 8999977
No 152
>PRK12483 threonine dehydratase; Reviewed
Probab=22.59 E-value=6.2e+02 Score=23.44 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcC--CcEEEEecCCChHHHHHH----hcCCCCCEEEE
Q 038539 54 ASSAVRTANCIK--AALILVLTRGGTTAKMVS----KYRPSMPILSV 94 (181)
Q Consensus 54 a~aa~~~A~~~~--a~aIvv~T~sG~ta~~iS----k~RP~~pIiav 94 (181)
..-+.++.++++ .++||+..-+|.+.--++ .++|.+.|+++
T Consensus 173 gTig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGV 219 (521)
T PRK12483 173 GTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGV 219 (521)
T ss_pred HHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 345777788774 799999999999876555 45899999998
No 153
>PLN02970 serine racemase
Probab=22.58 E-value=4.8e+02 Score=22.17 Aligned_cols=40 Identities=20% Similarity=0.335 Sum_probs=31.8
Q ss_pred HHHHHHHHhc-CCcEEEEecCCChHHHHHHhc----CCCCCEEEE
Q 038539 55 SSAVRTANCI-KAALILVLTRGGTTAKMVSKY----RPSMPILSV 94 (181)
Q Consensus 55 ~aa~~~A~~~-~a~aIvv~T~sG~ta~~iSk~----RP~~pIiav 94 (181)
.-+.++.+++ +.+.||+..-+|.+..-++++ .|...|+++
T Consensus 164 t~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~V 208 (328)
T PLN02970 164 TIALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAA 208 (328)
T ss_pred HHHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEE
Confidence 3466677776 479999999999997766654 899999988
No 154
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=22.58 E-value=2.7e+02 Score=24.30 Aligned_cols=47 Identities=19% Similarity=0.315 Sum_probs=32.3
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEEecCCChHH----HHHHhc-----------------CCCCCEEEEeecc
Q 038539 48 SPLESLASSAVRTANCIKAALILVLTRGGTTA----KMVSKY-----------------RPSMPILSVIVPE 98 (181)
Q Consensus 48 ~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta----~~iSk~-----------------RP~~pIiav~~~~ 98 (181)
++.......+++.+...++++||.+ .|-++ +.++-. +|..|+|+| |+
T Consensus 69 ~p~~~~v~~~~~~~~~~~~D~IIai--GGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaI--PT 136 (382)
T cd08187 69 NPRLETVREGIELCKEEKVDFILAV--GGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTV--LT 136 (382)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe--CChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEE--eC
Confidence 3445566778888888899998876 66544 344332 577899977 64
No 155
>COG2164 Uncharacterized conserved protein [Function unknown]
Probab=22.50 E-value=1.2e+02 Score=22.27 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=26.8
Q ss_pred hhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEE
Q 038539 115 THSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVAL 166 (181)
Q Consensus 115 r~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv 166 (181)
.-|+|++|=.|+.-..... .+.-+.|-...+-+.-..-++.||+|++-
T Consensus 77 kAlClFFGkTpmsddkiqP----aSaVNvIGrIv~~lE~lk~v~dGe~v~ve 124 (126)
T COG2164 77 KALCLFFGKTPMSDDKIQP----ASAVNVIGRIVKNLELLKSVDDGERVIVE 124 (126)
T ss_pred cEEEEEecCCcCcccccCc----cchHHHHHHHHhhHHhhhcccCCceEEEe
Confidence 3467888888876543321 12223333333333344447899999873
No 156
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=22.46 E-value=94 Score=22.76 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=15.8
Q ss_pred CCCCCCEEEEEeec---CCCcEEE
Q 038539 156 LCRAGDSVVALHRM---HIASVLK 176 (181)
Q Consensus 156 ~~~~Gd~vvvv~g~---g~tn~i~ 176 (181)
.++.||.|+++... |.+.++|
T Consensus 50 ~L~dGDsV~liKDLkVKGss~~~K 73 (109)
T TIGR00686 50 LLANGDSVILIKDLKVKGSSLVLK 73 (109)
T ss_pred CccCCCEEEEEeeccccCccccee
Confidence 48899999999876 5555454
No 157
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=22.26 E-value=2.3e+02 Score=23.87 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCCCCCCEEEEEe-ecCCC
Q 038539 145 EFALQHAMAKGLCRAGDSVVALH-RMHIA 172 (181)
Q Consensus 145 ~~a~~~~~~~g~~~~Gd~vvvv~-g~g~t 172 (181)
-.++..+.+.|.+++||+++++. |.|.+
T Consensus 289 ~~~L~~~~~~g~~~~Gd~vll~~~G~G~s 317 (326)
T CHL00203 289 PLALDEAIQNNKIQPGQIIVLSGFGAGLT 317 (326)
T ss_pred HHHHHHHHHhCCCCCCCEEEEEEEchhhh
Confidence 36677788899999999999876 33544
No 158
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=22.10 E-value=1.1e+02 Score=27.79 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=32.2
Q ss_pred CCcEEEEecCCChHHHHHHhcC------------CCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 65 KAALILVLTRGGTTAKMVSKYR------------PSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~iSk~R------------P~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.--+++|.|.||.|..-++.|| ....++++ || ++....+.++--+|+..+..++
T Consensus 132 ~~Tl~iviSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~vai------Td------~~~g~L~~~A~~~g~~~f~ip~ 197 (446)
T PRK00973 132 EKTLFNVISKSGNTAETLANYLIIRGILEKLGLDPKKHLVFT------TD------PEKGKLKKIAEKEGYRTLEIPE 197 (446)
T ss_pred ccEEEEEEeCCCCCHHHHHHHHHHHHHHHhcCccccceEEEE------cC------CCccchHHHHHHcCCcEEeeCC
Confidence 3458999999999976555443 45578888 62 3332345555555554444333
No 159
>PF06613 KorB_C: KorB C-terminal beta-barrel domain; InterPro: IPR010575 This domain is found in several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This family is found in conjunction with IPR003115 from INTERPRO.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1IGQ_B 1IGU_A.
Probab=21.94 E-value=11 Score=24.71 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=17.5
Q ss_pred cEEEEecCCChHHHHHHhcCCCC
Q 038539 67 ALILVLTRGGTTAKMVSKYRPSM 89 (181)
Q Consensus 67 ~aIvv~T~sG~ta~~iSk~RP~~ 89 (181)
|+||-....|+.||++-.-||..
T Consensus 8 Kaiv~V~~d~R~arllLnrRps~ 30 (60)
T PF06613_consen 8 KAIVQVEHDGRPARLLLNRRPSS 30 (60)
T ss_dssp SEEEEEEETTEEEEE-TTB--SS
T ss_pred ccEEEEEECCchhhhhhccCCCc
Confidence 78888899999999999999874
No 160
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=21.87 E-value=2.4e+02 Score=24.49 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=32.9
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEEecCCChH----HHHHHh--------------------cCCCCCEEEEeecccc
Q 038539 48 SPLESLASSAVRTANCIKAALILVLTRGGTT----AKMVSK--------------------YRPSMPILSVIVPEIK 100 (181)
Q Consensus 48 ~~~~aia~aa~~~A~~~~a~aIvv~T~sG~t----a~~iSk--------------------~RP~~pIiav~~~~~~ 100 (181)
++.......+++.+.+.++++||.+ .|-+ |+.++- ++|..|++++ |+..
T Consensus 64 ~p~~~~v~~~~~~~~~~~~D~IIav--GGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaI--PTta 136 (375)
T cd08179 64 DPSVETVLKGAEAMREFEPDWIIAL--GGGSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAI--PSTS 136 (375)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEEe--CCccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEe--CCCC
Confidence 3555667778888889999999887 4433 445541 2456899977 7443
No 161
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.85 E-value=1.8e+02 Score=24.64 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=24.4
Q ss_pred cCHHHHHHHHHHHHHHcCCCCCCCEEEEEeecC
Q 038539 138 ESTEETIEFALQHAMAKGLCRAGDSVVALHRMH 170 (181)
Q Consensus 138 ~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~g~g 170 (181)
++...-|..|++.+-+.+...+-|.||++.|-|
T Consensus 54 ~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGG 86 (319)
T PF02601_consen 54 EGAAASIVSALRKANEMGQADDFDVIIIIRGGG 86 (319)
T ss_pred cchHHHHHHHHHHHHhccccccccEEEEecCCC
Confidence 345566778888888777555679999998864
No 162
>PLN02565 cysteine synthase
Probab=21.71 E-value=1.9e+02 Score=24.72 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=31.0
Q ss_pred HHHHHHHHhcC--CcEEEEecCCChHHH----HHHhcCCCCCEEEE
Q 038539 55 SSAVRTANCIK--AALILVLTRGGTTAK----MVSKYRPSMPILSV 94 (181)
Q Consensus 55 ~aa~~~A~~~~--a~aIvv~T~sG~ta~----~iSk~RP~~pIiav 94 (181)
.-+.++.++++ .++||+..-+|.+.. .+..++|.+.|+++
T Consensus 160 t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~V 205 (322)
T PLN02565 160 TTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGV 205 (322)
T ss_pred HHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 34456666763 899999999998864 55566799999998
No 163
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=21.71 E-value=1.4e+02 Score=25.50 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=12.9
Q ss_pred CCChHHHHHHhcCCC-CCEE
Q 038539 74 RGGTTAKMVSKYRPS-MPIL 92 (181)
Q Consensus 74 ~sG~ta~~iSk~RP~-~pIi 92 (181)
.+|+--..+|+-||+ .|||
T Consensus 192 rsGRdL~nmAkkRtNiiPIi 211 (317)
T KOG1596|consen 192 RSGRDLINMAKKRTNIIPII 211 (317)
T ss_pred cchHHHHHHhhccCCceeee
Confidence 467777777788877 4554
No 164
>PRK06852 aldolase; Validated
Probab=21.16 E-value=5.4e+02 Score=22.18 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhcCCCC--cchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCC-----C--hHHHHHH
Q 038539 13 EIAVQTMARICLEAENFINY--GDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRG-----G--TTAKMVS 83 (181)
Q Consensus 13 veaV~~M~~I~~~aE~~~~~--~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~s-----G--~ta~~iS 83 (181)
-+.++-+.+|+.+++++--- -..|.+-. ..... ...+.|+. |+++|.+++|+.|=+ -.+ | .+-+.+-
T Consensus 150 ~~ml~~l~~v~~ea~~~GlPll~~~yprG~-~i~~~-~~~~~ia~-aaRiaaELGADIVKv-~y~~~~~~g~~e~f~~vv 225 (304)
T PRK06852 150 SEMLSEAAQIIYEAHKHGLIAVLWIYPRGK-AVKDE-KDPHLIAG-AAGVAACLGADFVKV-NYPKKEGANPAELFKEAV 225 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeccCc-ccCCC-ccHHHHHH-HHHHHHHHcCCEEEe-cCCCcCCCCCHHHHHHHH
Confidence 56778888899999875110 00111100 01111 12355555 458888999995544 333 4 3444455
Q ss_pred hcCCCCCEEEE
Q 038539 84 KYRPSMPILSV 94 (181)
Q Consensus 84 k~RP~~pIiav 94 (181)
..-.++||+.-
T Consensus 226 ~~~g~vpVvia 236 (304)
T PRK06852 226 LAAGRTKVVCA 236 (304)
T ss_pred HhCCCCcEEEe
Confidence 55534676644
No 165
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=21.05 E-value=2.5e+02 Score=20.40 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcCC-CCCEEEE
Q 038539 49 PLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRP-SMPILSV 94 (181)
Q Consensus 49 ~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP-~~pIiav 94 (181)
..-.++..+.+.+.+-+.+.||++|.+|.-+..+.+-|- .+.|+.+
T Consensus 83 ~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~ 129 (149)
T cd06167 83 VDVALAIDALELAYKRRIDTIVLVSGDSDFVPLVERLRELGKRVIVV 129 (149)
T ss_pred ccHHHHHHHHHHhhhcCCCEEEEEECCccHHHHHHHHHHcCCEEEEE
Confidence 445788888999988888999999999988777666553 4666666
No 166
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=21.03 E-value=2e+02 Score=23.40 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEecCCChH
Q 038539 49 PLESLASSAVRTANCIKAALILVLTRGGTT 78 (181)
Q Consensus 49 ~~~aia~aa~~~A~~~~a~aIvv~T~sG~t 78 (181)
+.+++...++....+-+++.||++++.|..
T Consensus 155 ~~~~~~~~~v~~l~~~~~D~iIvl~H~G~~ 184 (257)
T cd07408 155 PIEEAKKVIVAALKAKGADVIVALGHLGVD 184 (257)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEeCcCcC
Confidence 444444332455555689999999999864
No 167
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=21.02 E-value=5.6e+02 Score=23.96 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=39.3
Q ss_pred HHHHHhcCCcEEEEecCCChHHHH----HHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEe
Q 038539 58 VRTANCIKAALILVLTRGGTTAKM----VSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVL 127 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T~sG~ta~~----iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~ 127 (181)
.+.|.--+|+++|+.|.+-..... +-++.|+.+|++- + +|+.-+..|.- -|+--+.
T Consensus 457 L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaR------a-------~~~~~~~~L~~-~Ga~~vv 516 (601)
T PRK03659 457 LRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILAR------A-------RGRVEAHELLQ-AGVTQFS 516 (601)
T ss_pred HHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEE------e-------CCHHHHHHHHh-CCCCEEE
Confidence 334444479999998888776644 4567899999988 5 78887777754 3665443
No 168
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=20.81 E-value=4.9e+02 Score=22.98 Aligned_cols=40 Identities=10% Similarity=0.135 Sum_probs=31.2
Q ss_pred HHHHHHHHhcC--CcEEEEecCCChHHHHHH----hcCCCCCEEEE
Q 038539 55 SSAVRTANCIK--AALILVLTRGGTTAKMVS----KYRPSMPILSV 94 (181)
Q Consensus 55 ~aa~~~A~~~~--a~aIvv~T~sG~ta~~iS----k~RP~~pIiav 94 (181)
..+.++.++++ .++||+..-+|.|..-++ .++|.+.|+++
T Consensus 158 t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~v 203 (454)
T TIGR01137 158 GTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGA 203 (454)
T ss_pred hhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEE
Confidence 44566777764 799999999999876444 46799999998
No 169
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=20.53 E-value=4.1e+02 Score=22.52 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEecCCChHHHH
Q 038539 50 LESLASSAVRTANCIKAALILVLTRGGTTAKM 81 (181)
Q Consensus 50 ~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~ 81 (181)
.+.|+.++-.++..+..+.-|.+.-.|.+.++
T Consensus 40 l~~I~~av~~~~~~l~~gGrl~~~G~G~Sg~l 71 (291)
T TIGR00274 40 LPDIAAAVEQIVQAFQQGGRLIYIGAGTSGRL 71 (291)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCcHHHHH
Confidence 34566666666666666677878888888874
No 170
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=20.51 E-value=3.1e+02 Score=23.84 Aligned_cols=48 Identities=17% Similarity=0.359 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEecCCChHH----HHHHh-----------------cCCCCCEEEEeecccc
Q 038539 49 PLESLASSAVRTANCIKAALILVLTRGGTTA----KMVSK-----------------YRPSMPILSVIVPEIK 100 (181)
Q Consensus 49 ~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta----~~iSk-----------------~RP~~pIiav~~~~~~ 100 (181)
+.......+++.+.+.++++||.+ .|-++ +.++- +.+..|++++ |+..
T Consensus 69 p~~~~v~~~~~~~~~~~~D~IIav--GGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~I--PTta 137 (377)
T cd08176 69 PTITNVKDGLAVFKKEGCDFIISI--GGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAI--NTTA 137 (377)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEe--CCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEe--CCCC
Confidence 444556667778888899999976 56544 44432 3577999977 7543
No 171
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=20.25 E-value=3e+02 Score=19.27 Aligned_cols=36 Identities=33% Similarity=0.370 Sum_probs=24.8
Q ss_pred HHHHHhcCCcEEEEecC---------CChHHHHHHhcCCCCCEEEE
Q 038539 58 VRTANCIKAALILVLTR---------GGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T~---------sG~ta~~iSk~RP~~pIiav 94 (181)
...+.+.+++.||+-+. -|++++.+.+.- .||++.+
T Consensus 106 ~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~-~~pVlvv 150 (154)
T COG0589 106 LELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHA-PCPVLVV 150 (154)
T ss_pred HHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcC-CCCEEEE
Confidence 34445558999998875 566677776654 6888866
No 172
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=20.21 E-value=3.1e+02 Score=23.80 Aligned_cols=48 Identities=27% Similarity=0.512 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH----HHHhc-----------------CCCCCEEEEeeccc
Q 038539 48 SPLESLASSAVRTANCIKAALILVLTRGGTTAK----MVSKY-----------------RPSMPILSVIVPEI 99 (181)
Q Consensus 48 ~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~----~iSk~-----------------RP~~pIiav~~~~~ 99 (181)
++.......+++.+.+.++++||.+ .|-++. .++-. ++..|++++ |+.
T Consensus 66 ~p~~~~v~~~~~~~~~~~~D~IIai--GGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~I--PTT 134 (376)
T cd08193 66 DPPEAVVEAAVEAARAAGADGVIGF--GGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILV--PTT 134 (376)
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEEe--CCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEe--CCC
Confidence 3445556667777888899999887 565544 33322 467899977 643
No 173
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=20.15 E-value=1.7e+02 Score=18.80 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=18.0
Q ss_pred cCCChHHHHHHhcCCCCCEEEE
Q 038539 73 TRGGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 73 T~sG~ta~~iSk~RP~~pIiav 94 (181)
+-+|.++..++++ |..-++++
T Consensus 5 ~G~G~~~~~l~~~-~~~~v~~~ 25 (95)
T PF08241_consen 5 CGTGRFAAALAKR-GGASVTGI 25 (95)
T ss_dssp -TTSHHHHHHHHT-TTCEEEEE
T ss_pred CcCCHHHHHHHhc-cCCEEEEE
Confidence 4589999999999 89999999
No 174
>PRK09483 response regulator; Provisional
Probab=20.12 E-value=3.8e+02 Score=20.05 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=32.7
Q ss_pred HhcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 62 NCIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 62 ~~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.....+.+++-. .+|.. .+.+-+..|..||+.+ +. ..+.... .-.+..|+..++.+.
T Consensus 44 ~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~l------s~-----~~~~~~~-~~~~~~g~~~~l~k~ 105 (217)
T PRK09483 44 RTNAVDVVLMDMNMPGIGGLEATRKILRYTPDVKIIML------TV-----HTENPLP-AKVMQAGAAGYLSKG 105 (217)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEEEE------eC-----CCCHHHH-HHHHHcCCCEEEeCC
Confidence 344567666642 23333 3445566789999988 41 0223333 334667888887765
Done!