Query 038539
Match_columns 181
No_of_seqs 151 out of 1079
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 21:06:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4drs_A Pyruvate kinase; glycol 100.0 5.4E-47 1.8E-51 339.4 18.6 161 1-180 360-525 (526)
2 3khd_A Pyruvate kinase; malari 100.0 8.1E-47 2.8E-51 337.0 19.3 162 1-181 354-520 (520)
3 3gr4_A Pyruvate kinase isozyme 100.0 5.5E-47 1.9E-51 340.0 18.1 168 1-181 379-550 (550)
4 3gg8_A Pyruvate kinase; malari 100.0 2.9E-46 9.9E-51 333.2 19.6 162 1-181 345-511 (511)
5 3hqn_D Pyruvate kinase, PK; TI 100.0 1.7E-46 5.9E-51 334.1 16.5 167 1-181 329-499 (499)
6 1e0t_A Pyruvate kinase, PK; ph 100.0 7.8E-45 2.7E-49 322.2 18.2 157 1-180 310-470 (470)
7 3t05_A Pyruvate kinase, PK; te 100.0 1.3E-44 4.3E-49 328.5 18.3 160 1-181 330-494 (606)
8 1a3w_A Pyruvate kinase; allost 100.0 5.3E-44 1.8E-48 319.1 20.6 167 1-180 330-500 (500)
9 2e28_A Pyruvate kinase, PK; al 100.0 1.3E-42 4.3E-47 315.5 19.8 159 1-180 311-474 (587)
10 3qtg_A Pyruvate kinase, PK; TI 100.0 2.9E-40 1E-44 291.3 15.2 140 1-178 320-460 (461)
11 1vp8_A Hypothetical protein AF 96.6 0.13 4.4E-06 40.4 14.6 113 49-169 27-167 (201)
12 1t57_A Conserved protein MTH16 96.5 0.14 4.6E-06 40.4 14.5 113 49-169 35-174 (206)
13 3hgm_A Universal stress protei 78.3 4.4 0.00015 28.1 5.5 41 53-94 98-147 (147)
14 3eul_A Possible nitrate/nitrit 77.3 15 0.00052 25.3 8.8 78 58-155 54-136 (152)
15 2z08_A Universal stress protei 76.5 7.3 0.00025 26.8 6.2 41 53-94 87-136 (137)
16 3eod_A Protein HNR; response r 76.4 13 0.00045 24.8 7.4 62 57-130 43-109 (130)
17 3ca8_A Protein YDCF; two domai 75.1 12 0.00041 30.2 7.9 51 112-169 100-153 (266)
18 1mjh_A Protein (ATP-binding do 72.4 10 0.00035 26.8 6.3 41 53-94 108-157 (162)
19 3tnj_A Universal stress protei 71.5 7.5 0.00026 27.1 5.3 41 53-94 97-145 (150)
20 4e7p_A Response regulator; DNA 71.1 17 0.00058 25.0 7.1 62 57-130 58-124 (150)
21 3f6p_A Transcriptional regulat 70.8 20 0.00068 23.7 7.4 61 57-130 38-103 (120)
22 3b2n_A Uncharacterized protein 68.5 24 0.00081 23.7 7.9 59 60-130 44-107 (133)
23 2dum_A Hypothetical protein PH 67.7 15 0.0005 26.2 6.3 41 53-94 105-154 (170)
24 3f6c_A Positive transcription 67.4 21 0.00072 23.8 6.8 74 62-155 43-121 (134)
25 2qr3_A Two-component system re 66.8 26 0.00088 23.4 7.6 61 58-130 40-110 (140)
26 3s3t_A Nucleotide-binding prot 66.4 14 0.00046 25.5 5.7 41 53-94 95-145 (146)
27 3hdg_A Uncharacterized protein 66.2 27 0.00091 23.4 8.0 59 60-130 46-109 (137)
28 3gl9_A Response regulator; bet 66.0 26 0.00089 23.2 8.1 62 57-130 38-106 (122)
29 3fdx_A Putative filament prote 66.0 15 0.00052 25.1 5.9 41 53-94 94-142 (143)
30 1tq8_A Hypothetical protein RV 64.9 14 0.00048 26.6 5.7 41 53-94 107-156 (163)
31 3dlo_A Universal stress protei 64.6 16 0.00053 26.1 5.9 41 53-94 105-154 (155)
32 1q77_A Hypothetical protein AQ 62.9 8 0.00027 26.6 3.9 41 53-94 97-137 (138)
33 3fg9_A Protein of universal st 62.8 12 0.00041 26.3 4.9 41 53-94 106-155 (156)
34 2qsj_A DNA-binding response re 61.9 31 0.0011 23.6 7.0 77 59-155 43-125 (154)
35 2hqr_A Putative transcriptiona 60.7 21 0.0007 26.5 6.1 61 57-130 36-98 (223)
36 2gm3_A Unknown protein; AT3G01 59.9 16 0.00054 26.2 5.2 41 53-94 112-161 (175)
37 3hzh_A Chemotaxis response reg 59.7 41 0.0014 23.3 7.3 54 65-130 83-141 (157)
38 3r0j_A Possible two component 58.2 58 0.002 24.6 10.2 78 57-153 59-141 (250)
39 1jmv_A USPA, universal stress 58.1 23 0.00077 24.2 5.6 41 53-94 90-136 (141)
40 3cz5_A Two-component response 58.1 32 0.0011 23.6 6.5 62 57-130 43-109 (153)
41 3cg0_A Response regulator rece 57.6 39 0.0013 22.5 8.5 59 59-130 48-112 (140)
42 3q9s_A DNA-binding response re 57.3 59 0.002 24.8 8.4 77 57-154 73-154 (249)
43 3grc_A Sensor protein, kinase; 56.7 41 0.0014 22.5 9.4 62 56-130 41-111 (140)
44 1dbw_A Transcriptional regulat 56.6 39 0.0013 22.2 8.6 60 59-130 41-105 (126)
45 3lua_A Response regulator rece 55.7 26 0.00089 23.6 5.5 61 58-130 42-111 (140)
46 3kto_A Response regulator rece 54.7 42 0.0014 22.4 6.5 56 63-130 48-110 (136)
47 3n53_A Response regulator rece 54.5 45 0.0016 22.3 8.8 61 58-130 39-106 (140)
48 2pln_A HP1043, response regula 53.5 47 0.0016 22.1 7.3 59 59-130 56-116 (137)
49 3hv2_A Response regulator/HD d 53.3 51 0.0018 22.5 8.7 62 57-130 50-117 (153)
50 1tmy_A CHEY protein, TMY; chem 53.2 43 0.0015 21.6 8.3 58 61-130 43-105 (120)
51 3s81_A Putative aspartate race 52.6 15 0.00051 29.6 4.3 84 9-94 34-128 (268)
52 2ayx_A Sensor kinase protein R 52.5 76 0.0026 24.3 9.1 62 57-130 165-231 (254)
53 1srr_A SPO0F, sporulation resp 52.5 45 0.0015 21.7 7.2 58 61-130 43-105 (124)
54 3idf_A USP-like protein; unive 52.2 15 0.0005 25.1 3.7 38 54-94 92-137 (138)
55 3cnb_A DNA-binding response re 51.7 50 0.0017 21.9 9.8 61 58-130 47-114 (143)
56 4dad_A Putative pilus assembly 50.6 53 0.0018 22.1 6.5 71 64-154 66-141 (146)
57 3jte_A Response regulator rece 50.5 54 0.0018 21.9 9.4 56 63-130 47-107 (143)
58 1kgs_A DRRD, DNA binding respo 49.6 73 0.0025 23.2 11.8 61 58-130 39-104 (225)
59 3snk_A Response regulator CHEY 49.4 24 0.00082 23.7 4.5 56 63-130 57-117 (135)
60 3nhm_A Response regulator; pro 49.3 53 0.0018 21.6 9.2 61 57-130 39-106 (133)
61 3gt7_A Sensor protein; structu 49.3 61 0.0021 22.2 9.5 62 57-130 43-111 (154)
62 1jbe_A Chemotaxis protein CHEY 49.2 52 0.0018 21.4 9.5 61 58-130 42-109 (128)
63 3h5i_A Response regulator/sens 48.2 59 0.002 21.8 8.2 54 64-130 49-108 (140)
64 3crn_A Response regulator rece 48.1 58 0.002 21.6 8.4 61 58-130 40-105 (132)
65 3kht_A Response regulator; PSI 47.8 60 0.0021 21.7 9.5 62 57-130 43-111 (144)
66 3p9z_A Uroporphyrinogen III co 47.3 18 0.0006 27.9 3.8 74 65-169 37-119 (229)
67 2qxy_A Response regulator; reg 47.0 61 0.0021 21.6 8.0 62 57-130 40-105 (142)
68 3loq_A Universal stress protei 46.7 99 0.0034 23.9 9.1 34 60-94 118-160 (294)
69 3hdv_A Response regulator; PSI 46.6 61 0.0021 21.4 7.6 53 66-130 53-111 (136)
70 1qkk_A DCTD, C4-dicarboxylate 45.5 69 0.0024 21.8 7.8 57 62-130 44-105 (155)
71 3i42_A Response regulator rece 45.1 60 0.0021 21.1 6.0 61 57-130 39-106 (127)
72 3rqi_A Response regulator prot 44.7 59 0.002 23.3 6.3 62 57-130 43-109 (184)
73 1a04_A Nitrate/nitrite respons 43.3 92 0.0032 22.6 9.6 61 58-130 44-109 (215)
74 3cg4_A Response regulator rece 42.3 73 0.0025 21.1 8.1 62 57-130 43-111 (142)
75 1yio_A Response regulatory pro 41.7 96 0.0033 22.3 7.4 60 59-130 42-106 (208)
76 3ojc_A Putative aspartate/glut 41.5 6.6 0.00023 30.8 0.5 84 9-94 10-105 (231)
77 3pfn_A NAD kinase; structural 40.8 14 0.00046 31.5 2.3 32 63-94 244-279 (365)
78 3klo_A Transcriptional regulat 39.9 52 0.0018 24.4 5.4 57 62-130 51-113 (225)
79 3kcn_A Adenylate cyclase homol 39.8 86 0.0029 21.2 8.2 60 59-130 41-107 (151)
80 2oqr_A Sensory transduction pr 39.0 84 0.0029 23.1 6.5 75 60-155 43-122 (230)
81 1ys7_A Transcriptional regulat 38.9 1.1E+02 0.0038 22.3 9.8 61 58-130 44-109 (233)
82 3t6k_A Response regulator rece 38.3 87 0.003 20.9 8.3 62 57-130 40-108 (136)
83 3loq_A Universal stress protei 37.1 37 0.0013 26.4 4.3 42 52-94 238-288 (294)
84 2zay_A Response regulator rece 36.9 93 0.0032 20.8 9.5 60 59-130 46-112 (147)
85 3mt0_A Uncharacterized protein 36.5 71 0.0024 24.8 5.9 41 53-94 225-274 (290)
86 1e5x_A Threonine synthase; thr 36.4 1.9E+02 0.0063 25.0 9.0 55 65-130 183-239 (486)
87 3cu5_A Two component transcrip 35.8 98 0.0034 20.7 9.1 62 57-130 41-107 (141)
88 3heb_A Response regulator rece 35.8 1E+02 0.0034 20.8 7.1 56 63-130 57-119 (152)
89 2rjn_A Response regulator rece 35.5 1E+02 0.0035 20.8 8.8 38 57-94 43-85 (154)
90 2zsk_A PH1733, 226AA long hypo 33.5 47 0.0016 25.4 4.2 81 9-94 9-102 (226)
91 2xhz_A KDSD, YRBH, arabinose 5 33.4 35 0.0012 24.7 3.4 29 65-94 96-129 (183)
92 2pl1_A Transcriptional regulat 32.9 96 0.0033 19.7 10.0 60 59-130 38-102 (121)
93 3olq_A Universal stress protei 32.4 77 0.0026 24.7 5.5 41 53-94 99-148 (319)
94 1zgz_A Torcad operon transcrip 31.5 1E+02 0.0035 19.7 9.1 60 58-130 39-103 (122)
95 1dc7_A NTRC, nitrogen regulati 30.9 92 0.0032 19.8 5.0 57 62-130 44-105 (124)
96 2v03_A Cysteine synthase B; py 30.9 1.8E+02 0.0063 23.0 7.6 41 53-94 44-90 (303)
97 3m6m_D Sensory/regulatory prot 30.7 1.2E+02 0.0042 20.3 8.0 62 57-130 50-120 (143)
98 3dwg_A Cysteine synthase B; su 30.5 1.4E+02 0.0047 24.1 6.9 40 55-94 166-210 (325)
99 3n0r_A Response regulator; sig 30.1 1.8E+02 0.0061 22.9 7.4 76 56-153 196-277 (286)
100 1xpm_A 3-hydroxy-3-methylgluta 30.0 83 0.0029 26.2 5.6 30 146-175 283-313 (396)
101 4ewp_A 3-oxoacyl-[acyl-carrier 29.9 62 0.0021 26.2 4.6 29 144-172 312-341 (350)
102 3eq2_A Probable two-component 29.8 1.9E+02 0.0066 23.4 7.8 62 57-130 41-107 (394)
103 3cfy_A Putative LUXO repressor 29.7 1.2E+02 0.0042 20.1 9.2 61 58-130 41-106 (137)
104 3il6_A 3-oxoacyl-[acyl-carrier 29.7 95 0.0032 25.0 5.7 34 144-177 282-318 (321)
105 1wcw_A Uroporphyrinogen III sy 29.0 1.9E+02 0.0065 22.0 7.6 65 64-152 182-257 (261)
106 1jfl_A Aspartate racemase; alp 28.9 36 0.0012 26.0 2.9 84 9-94 9-103 (228)
107 1jr2_A Uroporphyrinogen-III sy 28.7 26 0.00089 27.8 2.1 67 65-155 210-284 (286)
108 1p6q_A CHEY2; chemotaxis, sign 28.4 1.2E+02 0.0042 19.5 8.0 61 58-130 44-111 (129)
109 2a9o_A Response regulator; ess 28.1 1.2E+02 0.004 19.2 7.8 56 62-130 42-102 (120)
110 3olq_A Universal stress protei 27.9 91 0.0031 24.3 5.2 41 53-94 254-303 (319)
111 3dwg_A Cysteine synthase B; su 27.9 2.4E+02 0.0081 22.7 9.7 43 51-94 54-102 (325)
112 1gvf_A Tagatose-bisphosphate a 27.5 2.4E+02 0.0084 22.7 7.8 88 52-156 29-129 (286)
113 1qo0_D AMIR; binding protein, 27.4 1.3E+02 0.0045 21.4 5.7 54 65-130 52-109 (196)
114 1mvo_A PHOP response regulator 27.0 1.3E+02 0.0046 19.5 8.8 58 61-130 43-105 (136)
115 2q5c_A NTRC family transcripti 27.0 85 0.0029 23.6 4.7 28 63-94 49-76 (196)
116 2gwr_A DNA-binding response re 27.0 1.6E+02 0.0056 21.7 6.4 73 62-155 46-123 (238)
117 3odp_A Putative tagatose-6-pho 26.8 22 0.00074 30.2 1.3 29 66-94 109-143 (393)
118 1vc3_B L-aspartate-alpha-decar 26.8 36 0.0012 23.4 2.2 13 155-167 53-65 (96)
119 3afo_A NADH kinase POS5; alpha 26.6 34 0.0012 29.1 2.5 32 63-94 226-261 (388)
120 1p2f_A Response regulator; DRR 26.5 1.3E+02 0.0046 21.7 5.7 55 64-130 42-101 (220)
121 1zh2_A KDP operon transcriptio 26.1 1.3E+02 0.0044 19.0 8.1 55 63-130 43-102 (121)
122 4es6_A Uroporphyrinogen-III sy 26.0 1.2E+02 0.0041 23.2 5.5 80 65-169 58-142 (254)
123 3a10_A Response regulator; pho 26.0 1.3E+02 0.0044 19.0 8.2 59 58-130 38-101 (116)
124 3d8t_A Uroporphyrinogen-III sy 26.0 1.3E+02 0.0044 23.6 5.8 65 64-152 207-282 (286)
125 3s21_A 3-oxoacyl-[ACP] synthas 25.7 1.1E+02 0.0038 24.8 5.5 29 144-172 308-337 (345)
126 3cis_A Uncharacterized protein 25.2 2.2E+02 0.0074 22.1 7.0 29 65-94 122-159 (309)
127 1xhf_A DYE resistance, aerobic 25.0 1.4E+02 0.0047 19.0 7.9 60 58-130 40-104 (123)
128 1uhe_A Aspartate 1-decarboxyla 25.0 36 0.0012 23.4 1.9 12 156-167 52-63 (97)
129 3mt0_A Uncharacterized protein 24.7 2.4E+02 0.0081 21.6 9.1 41 53-94 77-126 (290)
130 3il3_A 3-oxoacyl-[acyl-carrier 24.7 70 0.0024 25.9 4.0 29 144-172 286-315 (323)
131 1tzb_A Glucose-6-phosphate iso 24.6 45 0.0015 26.8 2.8 28 66-94 80-112 (302)
132 3sho_A Transcriptional regulat 24.3 54 0.0018 23.8 3.0 29 65-94 87-120 (187)
133 3plx_B Aspartate 1-decarboxyla 23.8 39 0.0013 23.5 1.9 12 156-167 53-64 (102)
134 3gwa_A 3-oxoacyl-(acyl-carrier 23.6 77 0.0026 26.1 4.1 29 144-172 328-357 (365)
135 4dfe_A 3-oxoacyl-[acyl-carrier 23.6 77 0.0026 25.6 4.1 29 144-172 296-325 (333)
136 3cis_A Uncharacterized protein 23.6 1.5E+02 0.0053 23.0 5.8 36 56-94 260-304 (309)
137 2jba_A Phosphate regulon trans 23.1 1.5E+02 0.0052 18.9 6.8 57 62-130 43-106 (127)
138 1ve1_A O-acetylserine sulfhydr 22.6 1.4E+02 0.0048 23.7 5.4 39 56-94 155-199 (304)
139 3dzd_A Transcriptional regulat 22.5 3.2E+02 0.011 22.3 8.8 62 57-130 36-102 (368)
140 3foz_A TRNA delta(2)-isopenten 22.4 1.6E+02 0.0056 24.2 5.9 25 69-94 15-41 (316)
141 3c3w_A Two component transcrip 22.4 48 0.0016 24.7 2.4 60 59-130 41-105 (225)
142 2w6r_A Imidazole glycerol phos 22.1 1.9E+02 0.0064 22.2 6.0 82 58-156 162-251 (266)
143 4aec_A Cysteine synthase, mito 22.0 1.6E+02 0.0054 25.2 5.9 40 55-94 268-313 (430)
144 2v03_A Cysteine synthase B; py 21.9 1.4E+02 0.0049 23.7 5.4 40 55-94 153-198 (303)
145 4h27_A L-serine dehydratase/L- 21.5 1.6E+02 0.0054 24.2 5.7 40 55-94 183-229 (364)
146 3v4n_A HMG-COA synthase; hydro 21.4 1.6E+02 0.0054 24.6 5.7 29 146-174 288-318 (388)
147 3eph_A TRNA isopentenyltransfe 21.2 1.6E+02 0.0055 25.2 5.7 84 68-169 6-100 (409)
148 3tbh_A O-acetyl serine sulfhyd 20.8 1.6E+02 0.0054 23.9 5.5 38 57-94 167-210 (334)
149 3d3q_A TRNA delta(2)-isopenten 20.7 1.6E+02 0.0055 24.4 5.5 26 68-94 11-38 (340)
150 1uj6_A Ribose 5-phosphate isom 20.7 50 0.0017 25.9 2.2 55 51-123 10-71 (227)
151 2pju_A Propionate catabolism o 20.6 1.5E+02 0.005 23.0 5.0 42 65-122 63-104 (225)
152 3etn_A Putative phosphosugar i 20.5 82 0.0028 23.9 3.4 30 65-94 106-141 (220)
153 2b3t_A Protein methyltransfera 20.5 2.3E+02 0.0078 21.7 6.2 48 47-94 92-139 (276)
154 1z7w_A Cysteine synthase; tran 20.3 1.6E+02 0.0056 23.5 5.4 39 56-94 161-205 (322)
155 1v8d_A Hypothetical protein (T 20.2 89 0.003 24.7 3.5 28 139-166 42-69 (235)
156 1k66_A Phytochrome response re 20.2 1.9E+02 0.0065 18.9 9.1 55 64-130 61-122 (149)
157 3sqz_A Putative hydroxymethylg 20.1 1.6E+02 0.0055 25.0 5.5 30 146-175 318-349 (425)
158 3mw8_A Uroporphyrinogen-III sy 20.0 66 0.0023 24.5 2.8 76 65-169 50-129 (240)
159 3aey_A Threonine synthase; PLP 20.0 3E+02 0.01 22.2 7.0 42 52-94 63-106 (351)
160 1j0a_A 1-aminocyclopropane-1-c 20.0 3.3E+02 0.011 21.6 9.9 41 54-94 168-214 (325)
No 1
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=100.00 E-value=5.4e-47 Score=339.39 Aligned_cols=161 Identities=37% Similarity=0.534 Sum_probs=147.6
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||+++|+.++|...+.......+.+.+..++||.+|+++|++++|++||+||.||+||+
T Consensus 360 MLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~sG~tA~ 439 (526)
T 4drs_A 360 MLSGETANGAFPFDAVNVMSRVCAQAETCIDYPVLYHAIHSSVPKPVAVPEAIACSAVESAHDVNAKLIITITETGNTAR 439 (526)
T ss_dssp EESHHHHSCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHH
T ss_pred EEcchhhcccCHHHHHHHHHHHHHHHhhcccchhhhhhhhhccCCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCcHHHH
Confidence 99999999999999999999999999999888777776666666777899999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||||+ | ++++++|||+|+|||+|++++.. .+.|++++.++++++++|++++|
T Consensus 440 ~iSr~RP~~pI~a~------T-------~~~~~~r~l~L~wGV~p~~~~~~------~~~d~~i~~a~~~~~~~g~~~~G 500 (526)
T 4drs_A 440 LISKYRPSQTIIAC------T-------AKPEVARGLKIARGVKTYVLNSI------HHSEVVISNALALAKEESLIESG 500 (526)
T ss_dssp HHHHTCCSSEEEEE------E-------SCHHHHHHGGGSTTEEEEECSCC------CCHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHhhCCCCCEEEE------C-------CCHHHHHhhhccCCeEEEEeCCC------CCHHHHHHHHHHHHHHCCCCCCc
Confidence 99999999999999 6 99999999999999999999864 78999999999999999999999
Q ss_pred CEEEEEeec-----CCCcEEEEEEe
Q 038539 161 DSVVALHRM-----HIASVLKILVV 180 (181)
Q Consensus 161 d~vvvv~g~-----g~tn~i~i~~v 180 (181)
|.||+++|+ |+||+|||++|
T Consensus 501 D~vVi~~G~p~g~~G~TN~lrv~~V 525 (526)
T 4drs_A 501 DFAIAVHGVKESCPGSCNLMKIVRC 525 (526)
T ss_dssp CEEEEEC----------CCEEEEEC
T ss_pred CEEEEEeccCCCCCCcceEEEEEEC
Confidence 999999998 89999999987
No 2
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=8.1e-47 Score=337.05 Aligned_cols=162 Identities=36% Similarity=0.582 Sum_probs=149.2
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||+++|+..+|...|.......+.+.+..+++|.+|+++|++++|++||+||.||+||+
T Consensus 354 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~TA~ 433 (520)
T 3khd_A 354 MLSGETAGGKFPVEAVTIMSKICLEAEACIDYKLLYQSLVNAIETPISVQEAVARSAVETAESIQASLIIALTETGYTAR 433 (520)
T ss_dssp EESHHHHSCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHH
T ss_pred EecccccCCcCHHHHHHHHHHHHHHHHhhhhhhhhHhhhhhccCCCCCHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHH
Confidence 99999999999999999999999999998877666655544444566889999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||||+ | ++++++|||+|+|||+|++++.. .+.|++++.+++.+++.|++++|
T Consensus 434 ~vSr~RP~~PIia~------T-------~~~~~~r~l~L~~GV~p~~~~~~------~~~d~~~~~a~~~~~~~g~~~~G 494 (520)
T 3khd_A 434 LIAKYKPSCTILAL------S-------ASDSTVKCLNVHRGVTCIKVGSF------QGTDIVIRNAIEIAKQRNMAKVG 494 (520)
T ss_dssp HHHHTCCSSEEEEE------E-------SCHHHHHHGGGSTTEEEEECCSC------CCHHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHhcCCCCCEEEE------c-------CCHHHHHHHhccCCeEEEEeCCC------CCHHHHHHHHHHHHHHCCCCCCc
Confidence 99999999999999 6 99999999999999999998764 67999999999999999999999
Q ss_pred CEEEEEeec-----CCCcEEEEEEeC
Q 038539 161 DSVVALHRM-----HIASVLKILVVN 181 (181)
Q Consensus 161 d~vvvv~g~-----g~tn~i~i~~v~ 181 (181)
|.||+++|+ |.||+|||+.||
T Consensus 495 D~vVv~~G~~~g~~G~TN~lrv~~v~ 520 (520)
T 3khd_A 495 DSVIAIHGIKEEVSGGTNLMKVVQIE 520 (520)
T ss_dssp CEEEEEEC-CCSSTTCEEEEEEEECC
T ss_pred CEEEEEeCccCCCCCCCeEEEEEEeC
Confidence 999999998 799999999885
No 3
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=100.00 E-value=5.5e-47 Score=339.98 Aligned_cols=168 Identities=33% Similarity=0.505 Sum_probs=154.0
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||+++|+..+|...|..+....+.+.+..++||.+|+++|++++|++||+||.||+||+
T Consensus 379 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~TA~ 458 (550)
T 3gr4_A 379 MLSGETAKGDYPLEAVRMQHLIAREAEAAIYHLQLFEELRRLAPITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRSAH 458 (550)
T ss_dssp EESHHHHTCSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHTTCSCEEEECSSSHHHH
T ss_pred EEecCccCCCCHHHHHHHHHHHHHHHhhcchhHHHHHhhhhccCCCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHHH
Confidence 89999999999999999999999999998887766665544445567889999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||||+ | ++++++|||+|+|||+|++++.....+|..+.|++++.+++.++++|++++|
T Consensus 459 ~iSr~RP~~PIia~------T-------~~~~~aR~l~L~~GV~P~~~~~~~~~~~~~~~d~~~~~a~~~~~~~g~~~~G 525 (550)
T 3gr4_A 459 QVARYRPRAPIIAV------T-------RNPQTARQAHLYRGIFPVLCKDPVQEAWAEDVDLRVNFAMNVGKARGFFKKG 525 (550)
T ss_dssp HHHTTCCSSCEEEE------E-------SCHHHHHHGGGSTTEEEEECCSCCCSSHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHhhCCCCCEEEE------c-------CCHHHHHHHhccCCeEEEEecccccccccCCHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999 6 9999999999999999999987555566678899999999999999999999
Q ss_pred CEEEEEeec----CCCcEEEEEEeC
Q 038539 161 DSVVALHRM----HIASVLKILVVN 181 (181)
Q Consensus 161 d~vvvv~g~----g~tn~i~i~~v~ 181 (181)
|.||+++|+ |+||+|||++|.
T Consensus 526 D~vVv~~G~~~g~G~TN~lrv~~v~ 550 (550)
T 3gr4_A 526 DVVIVLTGWRPGSGFTNTMRVVPVP 550 (550)
T ss_dssp CEEEEEEESSSSTTCEEEEEEEECC
T ss_pred CEEEEEeCCCCCCCCCeEEEEEEcC
Confidence 999999998 899999999873
No 4
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=100.00 E-value=2.9e-46 Score=333.18 Aligned_cols=162 Identities=41% Similarity=0.681 Sum_probs=147.6
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||+++|+.++|...|.........+.+..+++|.+|+++|.+++|++||+||.||+||+
T Consensus 345 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~tA~ 424 (511)
T 3gg8_A 345 MLSGETANGEFPVITVETMARICYEAETCVDYPALYRAMCLAVPPPISTQEAVARAAVETAECVNAAIILALTETGQTAR 424 (511)
T ss_dssp EESHHHHTCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSHHHH
T ss_pred EecccccCCCCHHHHHHHHHHHHHHHHhchhHHHHHhhhhhcccCCCCHHHHHHHHHHHHHHhcCCCEEEEECCCchHHH
Confidence 99999999999999999999999999998877666655444444566789999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||||+ | ++++++|||+|+|||+|++++.. .+.|+++..+++++++.|++++|
T Consensus 425 ~iSr~RP~~PIia~------T-------~~~~~~r~l~L~~GV~p~~~~~~------~~~d~~~~~a~~~~~~~g~~~~G 485 (511)
T 3gg8_A 425 LIAKYRPMQPILAL------S-------ASESTIKHLQVIRGVTTMQVPSF------QGTDHVIRNAIVVAKERELVTEG 485 (511)
T ss_dssp HHHHTCCSSCEEEE------E-------SCHHHHHHGGGSTTEEEEECCC--------CHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHhhCCCCCEEEE------c-------CCHHHHHHhhccCCeEEEEeCCC------CCHHHHHHHHHHHHHHCCCCCCc
Confidence 99999999999999 6 99999999999999999998764 67999999999999999999999
Q ss_pred CEEEEEeec-----CCCcEEEEEEeC
Q 038539 161 DSVVALHRM-----HIASVLKILVVN 181 (181)
Q Consensus 161 d~vvvv~g~-----g~tn~i~i~~v~ 181 (181)
|.||+++|+ |+||+|||+.|+
T Consensus 486 D~vVi~~G~~~g~~G~TN~lrv~~v~ 511 (511)
T 3gg8_A 486 ESIVAVHGMKEEVAGSSNLLKVLTVE 511 (511)
T ss_dssp CEEEEEEEC------CCEEEEEEECC
T ss_pred CEEEEEeCccCCCCCCCeEEEEEEcC
Confidence 999999998 799999999875
No 5
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=100.00 E-value=1.7e-46 Score=334.12 Aligned_cols=167 Identities=37% Similarity=0.516 Sum_probs=147.7
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||+++|+..+|...|.......+.+.+..+++|.+|+++|++++|++||+||.||+||+
T Consensus 329 MLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~tA~ 408 (499)
T 3hqn_D 329 MLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSAR 408 (499)
T ss_dssp EESHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHHHHTCSEEEEECSSSHHHH
T ss_pred EEeccccCCCCHHHHHHHHHHHHHHHHhcchhHHHHhhhhhccCCCCCHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHH
Confidence 99999999999999999999999999998877666665544444566789999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||||+ | ++++++|||+|+|||+|++++....+. ..+.|++++.+++.++++|++++|
T Consensus 409 ~isr~RP~~pIia~------T-------~~~~~~r~l~L~~GV~p~~~~~~~~~~-~~~~d~~~~~a~~~~~~~g~~~~G 474 (499)
T 3hqn_D 409 LVAKYRPNCPIVCV------T-------TRLQTCRQLNITQGVESVFFDADKLGH-DEGKEHRVAAGVEFAKSKGYVQTG 474 (499)
T ss_dssp HHHHTCCSSCEEEE------E-------SCHHHHHHGGGSTTEEEEECCHHHHCC-CTTCHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHhhCCCCCEEEE------c-------CCHHHHHHhhccCCeEEEEeccccccc-cCCHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999 6 999999999999999999987531000 136789999999999999999999
Q ss_pred CEEEEEeec----CCCcEEEEEEeC
Q 038539 161 DSVVALHRM----HIASVLKILVVN 181 (181)
Q Consensus 161 d~vvvv~g~----g~tn~i~i~~v~ 181 (181)
|.||+++|+ |+||+|||+.|+
T Consensus 475 D~vVv~~G~~~~~G~TN~~rv~~v~ 499 (499)
T 3hqn_D 475 DYCVVIHADHKVKGYANQTRILLVE 499 (499)
T ss_dssp CEEEEEEECC-----CEEEEEEECC
T ss_pred CEEEEEeCCCCCCCCCeEEEEEEcC
Confidence 999999998 899999999874
No 6
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=100.00 E-value=7.8e-45 Score=322.20 Aligned_cols=157 Identities=33% Similarity=0.464 Sum_probs=133.8
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||+++|+.++|...+.... ...+..++||.+|+++|++++|++||+||.||+||+
T Consensus 310 MLSgETA~G~yPveaV~~m~~I~~~~E~~~~~~~~~~~~~----~~~~~~~aia~aa~~~a~~l~a~aIv~~T~sG~ta~ 385 (470)
T 1e0t_A 310 MLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDN----RKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSAR 385 (470)
T ss_dssp EECCC------CHHHHHHHHHHHHHHHTTCCCCCC-------------CHHHHHHHHHHHHHHTTCSBEEEECSSSHHHH
T ss_pred EecccccCCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhc----cccchHHHHHHHHHHHHHhcCCCEEEEECCChhHHH
Confidence 9999999999999999999999999999766543343211 123568999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||||+ | ++++++|||+|+|||+|++++.. .+.+++++.++++++++|++++|
T Consensus 386 ~isr~RP~~pI~a~------t-------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~a~~~~~~~g~~~~G 446 (470)
T 1e0t_A 386 AVRKYFPDATILAL------T-------TNEKTAHQLVLSKGVVPQLVKEI------TSTDDFYRLGKELALQSGLAHKG 446 (470)
T ss_dssp HHHTTCCSSBEEEE------E-------SCHHHHHHGGGSTTEEEEECSCC------CSHHHHHHHHHHHHHHTSSSCTT
T ss_pred HHHhhCCCCCEEEE------C-------CCHHHHHHhhhhccceEEEecCC------CCHHHHHHHHHHHHHHCCCCCCc
Confidence 99999999999999 6 99999999999999999998763 67999999999999999999999
Q ss_pred CEEEEEeec----CCCcEEEEEEe
Q 038539 161 DSVVALHRM----HIASVLKILVV 180 (181)
Q Consensus 161 d~vvvv~g~----g~tn~i~i~~v 180 (181)
|.||+++|+ |+||+|||+.+
T Consensus 447 D~vvv~~g~~~~~g~tn~~~v~~v 470 (470)
T 1e0t_A 447 DVVVMVSGALVPSGTTNTASVHVL 470 (470)
T ss_dssp CEEEEEECSSSCTTCCCEEEEEEC
T ss_pred CEEEEEeCCCCCCCccceEEEEEC
Confidence 999999986 89999999875
No 7
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=100.00 E-value=1.3e-44 Score=328.48 Aligned_cols=160 Identities=34% Similarity=0.492 Sum_probs=146.7
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||+++|+..+|...|...... .+.+..+++|.+|+++|++++|++||+||.||+||+
T Consensus 330 MLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~--~~~~~~~aia~aa~~~a~~l~a~aIv~~T~sG~ta~ 407 (606)
T 3t05_A 330 MLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKL--VETSLVNAIGISVAHTALNLNVKAIVAATESGSTAR 407 (606)
T ss_dssp EECHHHHSCSCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--SCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSHHHH
T ss_pred EecccccCCCCHHHHHHHHHHHHHHHHhhhhhHhhhhhhccc--cCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCchHHH
Confidence 999999999999999999999999999988776555443221 245789999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||||+ | ++++++|||+|+|||+|++++.. .+.|++++.++++++++|++++|
T Consensus 408 ~isr~RP~~pIia~------t-------~~~~~~r~l~L~~GV~p~~~~~~------~~~~~~~~~a~~~~~~~g~~~~G 468 (606)
T 3t05_A 408 TISKYRPHSDIIAV------T-------PSEETARQCSIVWGVQPVVKKGR------KSTDALLNNAVATAVETGRVTNG 468 (606)
T ss_dssp HHHHTCCSSEEEEE------E-------SCHHHHHHHHTSSSEEEEECCCC------SSHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHhhCCCCCEEEE------c-------CCHHHHHhhhccCCeEEEEeCCC------CCHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999 6 99999999999999999998864 67999999999999999999999
Q ss_pred CEEEEEeec-----CCCcEEEEEEeC
Q 038539 161 DSVVALHRM-----HIASVLKILVVN 181 (181)
Q Consensus 161 d~vvvv~g~-----g~tn~i~i~~v~ 181 (181)
|.||+++|+ |.||+|||+.|+
T Consensus 469 D~vVi~~G~p~g~~g~tN~~~v~~v~ 494 (606)
T 3t05_A 469 DLIIITAGVPTGETGTTNMMKIHLVG 494 (606)
T ss_dssp CEEEEEECSSTTTCSSCCEEEEEECC
T ss_pred CEEEEEeCccCCCCCCccceEEEEec
Confidence 999999997 899999999874
No 8
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=100.00 E-value=5.3e-44 Score=319.07 Aligned_cols=167 Identities=36% Similarity=0.504 Sum_probs=148.3
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||+++|+.++|...+.......+.+.+..++||.+|+++|++++|++||+||.||+||+
T Consensus 330 mLs~eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~a~~~~a~aIv~~T~sG~ta~ 409 (500)
T 1a3w_A 330 MLSGETAKGNYPINAVTTMAETAVIAEQAIAYLPNYDDMRNCTPKPTSTTETVAASAVAAVFEQKAKAIIVLSTSGTTPR 409 (500)
T ss_dssp CBSTTTTTCSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTSCCSSCCHHHHHHHHHHHHHHHHTCSCEEEECSSSHHHH
T ss_pred EecchhhcchhHHHHHHHHHHHHHHhhhhhhhhhHHHhhhhccccccchHHHHHHHHHHHHHhcCCCEEEEECCCchHHH
Confidence 89999999999999999999999999997766544443321122234678999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||||+ | ++++++|||+|+|||+|++++.....+|..+.+++++.++++++++|++++|
T Consensus 410 ~isr~RP~~pI~a~------t-------~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~~g~~~~G 476 (500)
T 1a3w_A 410 LVSKYRPNCPIILV------T-------RCPRAARFSHLYRGVFPFVFEKEPVSDWTDDVEARINFGIEKAKEFGILKKG 476 (500)
T ss_dssp HHHHTCCSSCEEEE------E-------SCTTHHHHGGGSTTEEEEECCSCCCSCTTTHHHHHHHHHHHHHHHTTCSCTT
T ss_pred HHHhhCCCCCEEEE------c-------CCHHHHHhhhhhCCeEEEEecccccccccCCHHHHHHHHHHHHHHCCCCCCc
Confidence 99999999999999 6 9999999999999999999976544556678999999999999999999999
Q ss_pred CEEEEEeec----CCCcEEEEEEe
Q 038539 161 DSVVALHRM----HIASVLKILVV 180 (181)
Q Consensus 161 d~vvvv~g~----g~tn~i~i~~v 180 (181)
|.||+++|+ |+||+|||+.+
T Consensus 477 D~vvv~~g~~~~~g~tn~~~v~~v 500 (500)
T 1a3w_A 477 DTYVSIQGFKAGAGHSNTLQVSTV 500 (500)
T ss_dssp CEEEEEECCCTTTCCCCEEEEEEC
T ss_pred CEEEEEecccCCCCCCceEEEEEC
Confidence 999999997 89999999875
No 9
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}
Probab=100.00 E-value=1.3e-42 Score=315.47 Aligned_cols=159 Identities=33% Similarity=0.481 Sum_probs=142.3
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||+++|+.++|...+..... ..+.+..+++|.+|+++|++++|++||+||.||+||+
T Consensus 311 MLSgETA~G~yPveaV~~m~~I~~~~E~~~~~~~~~~~~~~--~~~~~~~~aia~aa~~~a~~~~a~aIv~~T~sG~ta~ 388 (587)
T 2e28_A 311 MLSGETAAGQYPVEAVKTMHQIALRTEQALEHRDILSQRTK--ESQTTITDAIGQSVAHTALNLDVAAIVTPTVSGKTPQ 388 (587)
T ss_dssp EESHHHHTCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHH
T ss_pred eecccccCCCCHHHHHHHHHHHHHHHhhhhhhhhHhhhhhc--ccccchHHHHHHHHHHHHHhCCCCEEEEECCCcHHHH
Confidence 99999999999999999999999999997654333332221 2224678999999999999999999999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||||+ | ++++++|||+|+|||+|++++.. .+.+++++.+++++++.|++++|
T Consensus 389 ~isr~Rp~~pI~a~------t-------~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~a~~~~~~~G~~k~G 449 (587)
T 2e28_A 389 MVAKYRPKAPIIAV------T-------SNEAVSRRLALVWGVYTKEAPHV------NTTDEMLDVAVDAAVRSGLVKHG 449 (587)
T ss_dssp HHHHTCCSSCEEEE------E-------SSHHHHHHGGGSTTEEEEECCCC------CSHHHHHHHHHHHHHHHTCCCTT
T ss_pred HHHhcCCCCCEEEE------C-------CCHHHHHHHHHhcCceEEecccc------CCHHHHHHHHHHHHHhCCccccc
Confidence 99999999999999 6 99999999999999999998764 67899999999999999999999
Q ss_pred CEEEEEeec-----CCCcEEEEEEe
Q 038539 161 DSVVALHRM-----HIASVLKILVV 180 (181)
Q Consensus 161 d~vvvv~g~-----g~tn~i~i~~v 180 (181)
|.|++++|. |.||.+|++.+
T Consensus 450 D~VVItqG~P~g~~G~TN~LkI~~V 474 (587)
T 2e28_A 450 DLVVITAGVPVGETGSTNLMKVHVI 474 (587)
T ss_dssp CEEEEEECSSCSSCCCCCEEEEEEC
T ss_pred ceEEEecCcccCcCCCCceEEEEEE
Confidence 999999986 78999999865
No 10
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}
Probab=100.00 E-value=2.9e-40 Score=291.28 Aligned_cols=140 Identities=28% Similarity=0.317 Sum_probs=130.0
Q ss_pred CCCccccCCCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCChHHH
Q 038539 1 MLSGETAAGAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPMPMSPLESLASSAVRTANCIKAALILVLTRGGTTAK 80 (181)
Q Consensus 1 MLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~ 80 (181)
|||||||.|+||+|||++|++||+++|+...+. +.+.+..+++|.+|+++|++++|+ ||+||.||+||+
T Consensus 320 MLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~----------~~~~~~~~aia~aa~~~a~~~~a~-Iv~~T~SG~tA~ 388 (461)
T 3qtg_A 320 WLTNETASGKYPLAAVSWLSRILMNVEYQIPQS----------PLLQNSRDRFAKGLVELAQDLGAN-ILVFSMSGTLAR 388 (461)
T ss_dssp EECHHHHTSSCHHHHHHHHHHHHHTCCCCCCCC----------CCCCSHHHHHHHHHHHHHHHHTCE-EEEECSSSHHHH
T ss_pred EEcccccCCCCHHHHHHHHHHHHHHHHhhhhhc----------cCCCCHHHHHHHHHHHHHHhcCCC-EEEECCCcHHHH
Confidence 899999999999999999999999999976541 245578999999999999999999 999999999999
Q ss_pred HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 038539 81 MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEESTEETIEFALQHAMAKGLCRAG 160 (181)
Q Consensus 81 ~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~G 160 (181)
++|||||.+||||+ | ++++++|||+|+|||+|++++ . .+.|++++.+++.+++.|
T Consensus 389 ~vsr~RP~~pIia~------T-------~~~~~~r~l~l~~GV~p~~~~-~------~~~d~~~~~a~~~~~~~g----- 443 (461)
T 3qtg_A 389 RIAKFRPRGVVYVG------T-------PNVRVARSLSIVWALEPLYIP-A------ENYEEGLEKLISLKGTTP----- 443 (461)
T ss_dssp HHHTTCCSSCEEEE------E-------SCHHHHHHHTTSTTEEEEECC-C------SSHHHHHHHHHHHHCCSS-----
T ss_pred HHHhhCCCCCEEEe------C-------CCHHHHhhceeccceEEEEeC-C------CCHHHHHHHHHHHHHHCC-----
Confidence 99999999999999 6 999999999999999999987 3 678999999999999988
Q ss_pred CEEEEEeec-CCCcEEEEE
Q 038539 161 DSVVALHRM-HIASVLKIL 178 (181)
Q Consensus 161 d~vvvv~g~-g~tn~i~i~ 178 (181)
||++.|. |+||++||+
T Consensus 444 --vvit~g~p~~TN~~~v~ 460 (461)
T 3qtg_A 444 --FVATYGIRGGVHSVKVK 460 (461)
T ss_dssp --EEEEECCTTSCCEEEEE
T ss_pred --EEEEeccCCCCeEEEEE
Confidence 8888888 999999996
No 11
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=96.58 E-value=0.13 Score=40.40 Aligned_cols=113 Identities=21% Similarity=0.091 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcCCCCCEEEEeecccccccccccCC-----ChhhHhhhhccCCc
Q 038539 49 PLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCS-----DEAPATHSLIFRGL 123 (181)
Q Consensus 49 ~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~-----~~~~ar~l~l~~GV 123 (181)
-++.....|++.|.+++.+-||+.|.+|.||+.+...-....|++| |-..-++-+ ++.+.+.| --.|+
T Consensus 27 NT~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~~~i~lVvV------Th~~GF~~pg~~e~~~e~~~~L-~~~G~ 99 (201)
T 1vp8_A 27 NTEETLRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVV------TYHTGFVREGENTMPPEVEEEL-RKRGA 99 (201)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHCTTCEEEEE------ECCTTSSSTTCCSSCHHHHHHH-HHTTC
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHhcCCeEEEE------eCcCCCCCCCCCcCCHHHHHHH-HhCCC
Confidence 3677888889999999999999999999999998887777788887 311111112 34444443 45666
Q ss_pred EEEecCCCCCCC-------C-ccCHHHHHHHHHH---------------HHHHcCCCCCCCEEEEEeec
Q 038539 124 VPVLGSGSARAS-------D-EESTEETIEFALQ---------------HAMAKGLCRAGDSVVALHRM 169 (181)
Q Consensus 124 ~p~~~~~~~~~~-------~-~~~~~~~i~~a~~---------------~~~~~g~~~~Gd~vvvv~g~ 169 (181)
.-+-......+. + .-.+-+.+..++. .+...|++.. +.||.+.|.
T Consensus 100 ~V~t~tH~lsgveR~is~kfGG~~p~eiiA~tLR~~fgqG~KV~vEi~lMAaDAGlIp~-eeVIAiGGT 167 (201)
T 1vp8_A 100 KIVRQSHILSGLERSISRKLGGVSRTEAIAEALRSLFGHGLKVCVEITIMAADSGAIPI-EEVVAVGGR 167 (201)
T ss_dssp EEEECCCTTTTTHHHHHHHTCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSSCS-SCEEEEECS
T ss_pred EEEEEeccccchhHHHHHhcCCCCHHHHHHHHHHHHhcCCceEEEEEeeeecccCCCCc-ceEEEEccc
Confidence 444433221100 0 0235555665555 4668999999 899999888
No 12
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=96.53 E-value=0.14 Score=40.38 Aligned_cols=113 Identities=19% Similarity=0.138 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcCCCCCEEEEeecccccccccccCC-----ChhhHhhhhccCCc
Q 038539 49 PLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCS-----DEAPATHSLIFRGL 123 (181)
Q Consensus 49 ~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~-----~~~~ar~l~l~~GV 123 (181)
-++.....|++.|.+++.+-||+.|.+|.||+.+...-.. .|++| |-..-++-+ ++.+.+.| --.|+
T Consensus 35 NT~~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~~~-~lVvV------Th~~GF~~pg~~e~~~e~~~~L-~~~G~ 106 (206)
T 1t57_A 35 NTERVLELVGERADQLGIRNFVVASVSGETALRLSEMVEG-NIVSV------THHAGFREKGQLELEDEARDAL-LERGV 106 (206)
T ss_dssp GHHHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCCS-EEEEE------CCCTTSSSTTCCSSCHHHHHHH-HHHTC
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHccC-CEEEE------eCcCCCCCCCCCcCCHHHHHHH-HhCCC
Confidence 3677888889999999999999999999999999886645 77777 311111112 34444433 34455
Q ss_pred EEEecCCCCCCC-------C-ccCHHHHHHH--------------HHHHHHHcCCCCCCCEEEEEeec
Q 038539 124 VPVLGSGSARAS-------D-EESTEETIEF--------------ALQHAMAKGLCRAGDSVVALHRM 169 (181)
Q Consensus 124 ~p~~~~~~~~~~-------~-~~~~~~~i~~--------------a~~~~~~~g~~~~Gd~vvvv~g~ 169 (181)
.-+-........ + .-.+-+.+.+ +.-.+.+.|++..|+.||.+.|.
T Consensus 107 ~V~t~tH~lsG~eR~is~kfGG~~p~eiiA~tLR~fgqG~KV~vEi~lMAaDAGlIp~geeVIAiGGT 174 (206)
T 1t57_A 107 NVYAGSHALSGVGRGISNRFGGVTPVEIMAETLRMVSQGFKVCVEIAIMAADAGLIPVDEEVIAIGGT 174 (206)
T ss_dssp EEECCSCTTTTHHHHHHHHHCSCCHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTSSCSSSCEEEEECS
T ss_pred EEEEeeccccchhHHHHHhcCCCCHHHHHHHHHHHhCCCceEEEEEeeeeecCCCCCCCCeEEEEccc
Confidence 333322211000 0 0123333332 22346689999999999999998
No 13
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=78.26 E-value=4.4 Score=28.12 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCcEEEEecCC---------ChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~s---------G~ta~~iSk~RP~~pIiav 94 (181)
.+...++.|.+.+++.||+-++. |.++..+.+.-| ||++.+
T Consensus 98 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~-~pVlvV 147 (147)
T 3hgm_A 98 PSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAH-CPVLVV 147 (147)
T ss_dssp HHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCS-SCEEEC
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCC-CCEEEC
Confidence 34556677888899999987753 778888888765 999864
No 14
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=77.25 E-value=15 Score=25.31 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=45.5
Q ss_pred HHHHHhcCCcEEEEecC----CCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCC
Q 038539 58 VRTANCIKAALILVLTR----GGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSA 132 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T~----sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~ 132 (181)
.+...+.+.+.|++--. +|. ..+.+.+..|..||+.+ |+ .+......-.+--|+.-++.+.
T Consensus 54 ~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~Kp-- 119 (152)
T 3eul_A 54 LELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLI------SA------HDEPAIVYQALQQGAAGFLLKD-- 119 (152)
T ss_dssp HHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEE------ES------CCCHHHHHHHHHTTCSEEEETT--
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEE------Ec------cCCHHHHHHHHHcCCCEEEecC--
Confidence 33344556787777533 343 35567777899999998 52 3333333334567888888775
Q ss_pred CCCCccCHHHHHHHHHHHHHHcC
Q 038539 133 RASDEESTEETIEFALQHAMAKG 155 (181)
Q Consensus 133 ~~~~~~~~~~~i~~a~~~~~~~g 155 (181)
.+.+++. .+++.+.+.+
T Consensus 120 -----~~~~~l~-~~i~~~~~~~ 136 (152)
T 3eul_A 120 -----STRTEIV-KAVLDCAKGR 136 (152)
T ss_dssp -----CCHHHHH-HHHHHHHHCC
T ss_pred -----CCHHHHH-HHHHHHHcCC
Confidence 3455544 4444444443
No 15
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=76.51 E-value=7.3 Score=26.82 Aligned_cols=41 Identities=34% Similarity=0.442 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhcCCcEEEEecCC---------ChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~s---------G~ta~~iSk~RP~~pIiav 94 (181)
.+...++.|.+.+++.||+-++. |.++..+.+.- .||++.+
T Consensus 87 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~-~~pVlvv 136 (137)
T 2z08_A 87 PAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEA-PCPVLLV 136 (137)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHC-SSCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcC-CCCEEEe
Confidence 45566778888999999998774 67888888774 5999976
No 16
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=76.35 E-value=13 Score=24.76 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=38.1
Q ss_pred HHHHHHhcCCcEEEEecC----CCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 57 AVRTANCIKAALILVLTR----GGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~----sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
|.+...+.+.+.|++-.. +|. ..+.+.+..|.+||+.+ |+ ........-.+-.|+.-++.+.
T Consensus 43 a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~------t~------~~~~~~~~~~~~~g~~~~l~KP 109 (130)
T 3eod_A 43 ALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVI------SA------TENMADIAKALRLGVEDVLLKP 109 (130)
T ss_dssp HHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEE------EC------CCCHHHHHHHHHHCCSEEEESC
T ss_pred HHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE------Ec------CCCHHHHHHHHHcCCCEEEeCC
Confidence 444455667887777533 343 35567777799999998 52 2322223334567888888765
No 17
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=75.09 E-value=12 Score=30.23 Aligned_cols=51 Identities=4% Similarity=-0.069 Sum_probs=32.6
Q ss_pred hhHhhhhcc-CCcEE--EecCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 038539 112 APATHSLIF-RGLVP--VLGSGSARASDEESTEETIEFALQHAMAKGLCRAGDSVVALHRM 169 (181)
Q Consensus 112 ~~ar~l~l~-~GV~p--~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~g~ 169 (181)
...++.... +||-+ ++.+.. ..++.+...++.+.+.++|+ +++.+++|+..
T Consensus 100 ~~m~~~l~~~~GVp~~~IllE~~-----S~nT~ENa~~s~~ll~~~g~--~~~~iiLVTs~ 153 (266)
T 3ca8_A 100 TILADIAHQFWHIPHEKIWIEDQ-----STNCGENARFSIALLNQAVE--RVHTAIVVQDP 153 (266)
T ss_dssp HHHHHHHHHTTCCCGGGEEEECC-----CCSHHHHHHHHHHHHHTCSS--CCSCEEEECCT
T ss_pred HHHHHHHHHhcCCCHHHEEeCCC-----CccHHHHHHHHHHHHHhcCC--CCCeEEEECCh
Confidence 344555555 59843 344432 25777888889899999887 45667777643
No 18
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=72.44 E-value=10 Score=26.81 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCcEEEEecCC---------ChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~s---------G~ta~~iSk~RP~~pIiav 94 (181)
.+...++.|.+.+++.||+-++. |.++..+.+.- .||++.+
T Consensus 108 ~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~-~~pVlvv 157 (162)
T 1mjh_A 108 PHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKS-NKPVLVV 157 (162)
T ss_dssp HHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHC-CSCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhC-CCCEEEE
Confidence 45566778888999999998873 67888888875 6999977
No 19
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=71.53 E-value=7.5 Score=27.11 Aligned_cols=41 Identities=32% Similarity=0.417 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCcEEEEecCC--------ChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTRG--------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~s--------G~ta~~iSk~RP~~pIiav 94 (181)
.+...++.|.+.+++.||+-++. |.++..+.+.=| ||++.+
T Consensus 97 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~-~pVlvv 145 (150)
T 3tnj_A 97 PREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAK-CDVLAV 145 (150)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHCS-SEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCC-CCEEEE
Confidence 34566678888899999987763 667777777554 999976
No 20
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=71.09 E-value=17 Score=25.03 Aligned_cols=62 Identities=10% Similarity=0.054 Sum_probs=38.7
Q ss_pred HHHHHHhcCCcEEEEecC----CCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 57 AVRTANCIKAALILVLTR----GGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~----sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
|.+...+...+.|++-.. +|. ..+.+-+..|.+||+.+ |+ ........-.+-.|+.-++.+.
T Consensus 58 al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~l------s~------~~~~~~~~~~~~~g~~~~l~Kp 124 (150)
T 4e7p_A 58 AIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVV------TT------FKRAGYFERAVKAGVDAYVLKE 124 (150)
T ss_dssp HHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEE------ES------CCCHHHHHHHHHTTCSEEEETT
T ss_pred HHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE------eC------CCCHHHHHHHHHCCCcEEEecC
Confidence 344455667887777543 343 35567777899999999 52 3333333334667888888775
No 21
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=70.81 E-value=20 Score=23.67 Aligned_cols=61 Identities=23% Similarity=0.228 Sum_probs=36.3
Q ss_pred HHHHHHhcCCcEEEEecC----CChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 57 AVRTANCIKAALILVLTR----GGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~----sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
|.+...+.+.+.|++--. +|.. .+.+.+ ++..||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 38 al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~-~~~~~ii~~------t~------~~~~~~~~~~~~~ga~~~l~KP 103 (120)
T 3f6p_A 38 AVEMVEELQPDLILLDIMLPNKDGVEVCREVRK-KYDMPIIML------TA------KDSEIDKVIGLEIGADDYVTKP 103 (120)
T ss_dssp HHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHT-TCCSCEEEE------EE------SSCHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCCCEEEE------EC------CCChHHHHHHHhCCcceeEcCC
Confidence 344445667887777543 3333 333433 568999988 52 3333334445678998888775
No 22
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=68.45 E-value=24 Score=23.67 Aligned_cols=59 Identities=7% Similarity=0.030 Sum_probs=35.9
Q ss_pred HHHhcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 60 TANCIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 60 ~A~~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
...+.+.+.|++-- .+|.. .+.+.+..|..||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 44 ~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~l------s~------~~~~~~~~~~~~~ga~~~l~Kp 107 (133)
T 3b2n_A 44 LIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIV------TT------FKRPGYFEKAVVNDVDAYVLKE 107 (133)
T ss_dssp HHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEE------ES------CCCHHHHHHHHHTTCSEEEETT
T ss_pred HHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEE------ec------CCCHHHHHHHHHcCCcEEEECC
Confidence 33444678777643 24543 5567666799999998 52 3332233334567888888775
No 23
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=67.72 E-value=15 Score=26.25 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCcEEEEecCC---------ChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~s---------G~ta~~iSk~RP~~pIiav 94 (181)
.+...++.|.+.+++.||+-++. |.++..+.+.- .|||+.+
T Consensus 105 ~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~-~~PVlvv 154 (170)
T 2dum_A 105 PWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKT-KKPVLII 154 (170)
T ss_dssp HHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHC-SSCEEEE
T ss_pred hHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhC-CCCEEEE
Confidence 45566778888999999998762 56777777765 4999976
No 24
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=67.43 E-value=21 Score=23.77 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=42.4
Q ss_pred HhcCCcEEEEecC----CCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCC
Q 038539 62 NCIKAALILVLTR----GGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASD 136 (181)
Q Consensus 62 ~~~~a~aIvv~T~----sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~ 136 (181)
.+.+.+.|++-.. +|. ..+.+-+..|..||+.+ |+ ........-.+-.|+.-++.+..
T Consensus 43 ~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~kp~----- 105 (134)
T 3f6c_A 43 ETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIV------SA------KNDHFYGKHCADAGANGFVSKKE----- 105 (134)
T ss_dssp HHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEE------EC------C---CTHHHHHHTTCSEEEEGGG-----
T ss_pred HhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEE------eC------CCChHHHHHHHHhCCCEEEeCCC-----
Confidence 4456788877543 343 35567777899999988 52 22222333345678888877652
Q ss_pred ccCHHHHHHHHHHHHHHcC
Q 038539 137 EESTEETIEFALQHAMAKG 155 (181)
Q Consensus 137 ~~~~~~~i~~a~~~~~~~g 155 (181)
+.++ +..+++.+.+.+
T Consensus 106 --~~~~-l~~~i~~~~~~~ 121 (134)
T 3f6c_A 106 --GMNN-IIAAIEAAKNGY 121 (134)
T ss_dssp --CTHH-HHHHHHHHHTTC
T ss_pred --CHHH-HHHHHHHHHCCC
Confidence 3333 444555555444
No 25
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=66.78 E-value=26 Score=23.43 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=36.1
Q ss_pred HHHHHhcCCcEEEEecC---------CCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEe
Q 038539 58 VRTANCIKAALILVLTR---------GGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVL 127 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T~---------sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~ 127 (181)
.+...+...+.|++--. +|. ..+.+.+..|.+||+.+ |+ ........-.+-.|+.-++
T Consensus 40 ~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~l------s~------~~~~~~~~~~~~~g~~~~l 107 (140)
T 2qr3_A 40 STVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLF------TA------YADIDLAVRGIKEGASDFV 107 (140)
T ss_dssp HHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEE------EE------GGGHHHHHHHHHTTCCEEE
T ss_pred HHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEE------EC------CCCHHHHHHHHHcCchhee
Confidence 33444556787776533 332 24566666799999999 52 2222233334567888887
Q ss_pred cCC
Q 038539 128 GSG 130 (181)
Q Consensus 128 ~~~ 130 (181)
.+.
T Consensus 108 ~kp 110 (140)
T 2qr3_A 108 VKP 110 (140)
T ss_dssp EES
T ss_pred eCC
Confidence 765
No 26
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=66.36 E-value=14 Score=25.51 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=31.4
Q ss_pred HHHHHHH-HHHhcCCcEEEEecC---------CChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVR-TANCIKAALILVLTR---------GGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~-~A~~~~a~aIvv~T~---------sG~ta~~iSk~RP~~pIiav 94 (181)
.+...++ .|++.+++.||+-++ -|.++..+.+.-| ||++.+
T Consensus 95 ~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~-~pVlvV 145 (146)
T 3s3t_A 95 PKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAP-CNVIVI 145 (146)
T ss_dssp HHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCS-SEEEEE
T ss_pred hHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCC-CCEEEe
Confidence 4556667 788889999998765 3678888887665 999976
No 27
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=66.17 E-value=27 Score=23.38 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=36.9
Q ss_pred HHHhcCCcEEEEecC----CCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 60 TANCIKAALILVLTR----GGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 60 ~A~~~~a~aIvv~T~----sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
...+...+.|++-.. +|. ..+.+.+..|..||+.+ |+ ........-.+-.|+.-++.+.
T Consensus 46 ~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~kP 109 (137)
T 3hdg_A 46 LFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVI------SA------FSEMKYFIKAIELGVHLFLPKP 109 (137)
T ss_dssp HHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEEC------CC------CCCHHHHHHHHHHCCSEECCSS
T ss_pred HHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE------ec------CcChHHHHHHHhCCcceeEcCC
Confidence 334456787777543 343 35567777799999988 52 3333333444677888887765
No 28
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=66.01 E-value=26 Score=23.19 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=37.1
Q ss_pred HHHHHHhcCCcEEEEec----CCChH-HHHHHhc--CCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecC
Q 038539 57 AVRTANCIKAALILVLT----RGGTT-AKMVSKY--RPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGS 129 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T----~sG~t-a~~iSk~--RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~ 129 (181)
|.+...+.+.+.|++-- .+|.. .+.+.+. .|..||+.+ |+ .+........+-.|+.-++.+
T Consensus 38 al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~------s~------~~~~~~~~~~~~~Ga~~~l~K 105 (122)
T 3gl9_A 38 ALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVL------TA------KGGEEDESLALSLGARKVMRK 105 (122)
T ss_dssp HHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEE------ES------CCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEE------ec------CCchHHHHHHHhcChhhhccC
Confidence 34444566788777643 24543 3344332 378999998 52 333344445577888888877
Q ss_pred C
Q 038539 130 G 130 (181)
Q Consensus 130 ~ 130 (181)
.
T Consensus 106 P 106 (122)
T 3gl9_A 106 P 106 (122)
T ss_dssp S
T ss_pred C
Confidence 5
No 29
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=65.96 E-value=15 Score=25.14 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCcEEEEecC--------CChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTR--------GGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~--------sG~ta~~iSk~RP~~pIiav 94 (181)
.+....+.|.+.+++.||+-++ -|.++..+.+.- .||++.+
T Consensus 94 ~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~v~~~~-~~pVlvv 142 (143)
T 3fdx_A 94 PKDKILALAKSLPADLVIIASHRPDITTYLLGSNAAAVVRHA-ECSVLVV 142 (143)
T ss_dssp HHHHHHHHHHHTTCSEEEEESSCTTCCSCSSCHHHHHHHHHC-SSEEEEE
T ss_pred hHHHHHHHHHHhCCCEEEEeCCCCCCeeeeeccHHHHHHHhC-CCCEEEe
Confidence 4556677888899999999875 367788887754 5999866
No 30
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=64.87 E-value=14 Score=26.59 Aligned_cols=41 Identities=29% Similarity=0.318 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCcEEEEecCC---------ChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~s---------G~ta~~iSk~RP~~pIiav 94 (181)
.+...++.|.+.+++.||+-++. |+++..+.+.- .||++.+
T Consensus 107 ~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a-~~PVlvV 156 (163)
T 1tq8_A 107 PVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRA-KVDVLIV 156 (163)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhC-CCCEEEE
Confidence 35566778888999999998762 56677777765 5999977
No 31
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=64.60 E-value=16 Score=26.08 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCcEEEEecC---------CChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTR---------GGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~---------sG~ta~~iSk~RP~~pIiav 94 (181)
.+...++.|.+.+++.||+-++ -|.++..+.+. ..||++.+
T Consensus 105 ~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~-a~~PVLvV 154 (155)
T 3dlo_A 105 PPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILK-ANKPVICI 154 (155)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHH-CSSCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHh-CCCCEEEe
Confidence 4566677888899999998765 37888888874 46999876
No 32
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=62.88 E-value=8 Score=26.60 Aligned_cols=41 Identities=12% Similarity=-0.040 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~~pIiav 94 (181)
.+...++.|.+.+++.||+-++.-.++..+.+.=| ||++.+
T Consensus 97 ~~~~I~~~a~~~~~dliV~G~~g~sv~~~vl~~a~-~PVlvv 137 (138)
T 1q77_A 97 LSEEVKKFVEGKGYELVVWACYPSAYLCKVIDGLN-LASLIV 137 (138)
T ss_dssp HHHHHHHHHTTSCCSEEEECSCCGGGTHHHHHHSS-SEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCchHHHHHHhCC-CceEee
Confidence 44556677888899988887664356676766654 999865
No 33
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=62.75 E-value=12 Score=26.33 Aligned_cols=41 Identities=10% Similarity=0.202 Sum_probs=30.6
Q ss_pred HHHHHHHH-HHhcCCcEEEEecCC--------ChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRT-ANCIKAALILVLTRG--------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~-A~~~~a~aIvv~T~s--------G~ta~~iSk~RP~~pIiav 94 (181)
.+...++. |++.+++.||+-++. |.++..+.+.- .||++.+
T Consensus 106 ~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~~~Gs~~~~vl~~a-~~PVlvV 155 (156)
T 3fg9_A 106 VDDVILEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPRLARKA-PISVIVV 155 (156)
T ss_dssp HHHHHHHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHHHHHHC-SSEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCccceeecchHHHHHHhC-CCCEEEe
Confidence 45556666 788899999988763 77888887764 5999865
No 34
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=61.86 E-value=31 Score=23.63 Aligned_cols=77 Identities=9% Similarity=0.107 Sum_probs=41.0
Q ss_pred HHHHh-cCCcEEEEecC----CCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCC
Q 038539 59 RTANC-IKAALILVLTR----GGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSA 132 (181)
Q Consensus 59 ~~A~~-~~a~aIvv~T~----sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~ 132 (181)
+...+ ...+.||+--. +|. ..+.+.+..|.+||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 43 ~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l------s~------~~~~~~~~~~~~~g~~~~l~kp-- 108 (154)
T 2qsj_A 43 AFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALI------SG------ETDHELIRAALEAGADGFIPKS-- 108 (154)
T ss_dssp HHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEEEC-----------------CHHHHHHHHTTCCBBCCTT--
T ss_pred HHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEE------eC------CCCHHHHHHHHHccCCEEEeCC--
Confidence 33344 56787776432 343 35667677799999988 52 2222223334567887777664
Q ss_pred CCCCccCHHHHHHHHHHHHHHcC
Q 038539 133 RASDEESTEETIEFALQHAMAKG 155 (181)
Q Consensus 133 ~~~~~~~~~~~i~~a~~~~~~~g 155 (181)
.+.++ +..+++.+.+.+
T Consensus 109 -----~~~~~-L~~~l~~~~~~~ 125 (154)
T 2qsj_A 109 -----ADPQV-LIHAVSLILEGE 125 (154)
T ss_dssp -----SCHHH-HHHHHHHHHTTC
T ss_pred -----CCHHH-HHHHHHHHHcCC
Confidence 34554 444455554443
No 35
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=60.71 E-value=21 Score=26.52 Aligned_cols=61 Identities=10% Similarity=0.106 Sum_probs=37.0
Q ss_pred HHHHHHhcCCcEEEEecCCChH-HHHHHhcCC-CCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 57 AVRTANCIKAALILVLTRGGTT-AKMVSKYRP-SMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~sG~t-a~~iSk~RP-~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
|.+...+...+.|+....+|.. .+.+-+. | .+||+.+ |. .+......-.+-.|+.-++.+.
T Consensus 36 al~~l~~~~~dlvilp~~~g~~~~~~lr~~-~~~~~ii~l------t~------~~~~~~~~~~~~~Ga~~~l~Kp 98 (223)
T 2hqr_A 36 GEYLMDIRNYDLVMVSDKNALSFVSRIKEK-HSSIVVLVS------SD------NPTSEEEVHAFEQGADDYIAKP 98 (223)
T ss_dssp HHHHHTTSCCSEEEECCTTHHHHHHHHHHH-CTTSEEEEE------ES------SCCHHHHHHHHHHTCSEEEETT
T ss_pred HHHHHhcCCCCEEEeCCCCHHHHHHHHHhC-CCCCcEEEE------EC------CCCHHHHHHHHHcCCCEEEECC
Confidence 3444455677877733445544 4455555 7 8999999 52 3333334445677888888765
No 36
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=59.88 E-value=16 Score=26.25 Aligned_cols=41 Identities=17% Similarity=0.390 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcCCcEEEEecCC---------ChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~s---------G~ta~~iSk~RP~~pIiav 94 (181)
.+...++.|.+.+++.||+-++. |.++..+.+.-| |||+.+
T Consensus 112 ~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~-~pVlvv 161 (175)
T 2gm3_A 112 PKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAE-CPVMTI 161 (175)
T ss_dssp HHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCS-SCEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCC-CCEEEE
Confidence 34556677888899999988762 556777777654 999977
No 37
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=59.68 E-value=41 Score=23.30 Aligned_cols=54 Identities=6% Similarity=0.195 Sum_probs=33.8
Q ss_pred CCcEEEEecC----CChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 65 KAALILVLTR----GGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 65 ~a~aIvv~T~----sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
..+.|++--. +|.. .+.|.+..|.+|||.+ |+ .+......-.+-.|+.-++.+.
T Consensus 83 ~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~l------s~------~~~~~~~~~~~~~g~~~~l~KP 141 (157)
T 3hzh_A 83 NIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMI------SA------LGKEQLVKDCLIKGAKTFIVKP 141 (157)
T ss_dssp GCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEE------ES------CCCHHHHHHHHHTTCSEEEESS
T ss_pred CCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEE------ec------cCcHHHHHHHHHcCCCEEEeCC
Confidence 5677776533 3433 5567777899999988 52 3333333344667888887765
No 38
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=58.16 E-value=58 Score=24.62 Aligned_cols=78 Identities=14% Similarity=0.012 Sum_probs=47.5
Q ss_pred HHHHHHhcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCC
Q 038539 57 AVRTANCIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGS 131 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~ 131 (181)
|.+...+...+.|++-- .+|.. .+.+-+..|.+||+.+ |. .+......-.+-.|+.-++.+.
T Consensus 59 al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l------t~------~~~~~~~~~~~~~Ga~~yl~Kp- 125 (250)
T 3r0j_A 59 ALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFL------TA------RDSLQDKIAGLTLGGDDYVTKP- 125 (250)
T ss_dssp HHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEE------EC------STTHHHHHHHHTSTTCEEEESS-
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE------EC------CCCHHHHHHHHHcCCcEEEeCC-
Confidence 34444555678777753 24543 5566667799999999 52 3433444455788999888876
Q ss_pred CCCCCccCHHHHHHHHHHHHHH
Q 038539 132 ARASDEESTEETIEFALQHAMA 153 (181)
Q Consensus 132 ~~~~~~~~~~~~i~~a~~~~~~ 153 (181)
.+.+++.......+..
T Consensus 126 ------~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 126 ------FSLEEVVARLRVILRR 141 (250)
T ss_dssp ------CCHHHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHHHh
Confidence 3456554444334433
No 39
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=58.08 E-value=23 Score=24.20 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCcEEEEecCC------ChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTRG------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~s------G~ta~~iSk~RP~~pIiav 94 (181)
.+...++.|.+.+++.||+-++. |.++..+.+.= .||++.+
T Consensus 90 ~~~~I~~~a~~~~~dliV~G~~~~~~~~lgs~~~~vl~~~-~~pVlvv 136 (141)
T 1jmv_A 90 LGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNTI-KIDMLVV 136 (141)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCHHHHHHHHHHHHTTC-CSEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCchhhhhcchHHHHHhcC-CCCEEEe
Confidence 45566778888999999988762 34566666554 5999976
No 40
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=58.05 E-value=32 Score=23.58 Aligned_cols=62 Identities=13% Similarity=0.143 Sum_probs=37.9
Q ss_pred HHHHHHhcCCcEEEEecC----CCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 57 AVRTANCIKAALILVLTR----GGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~----sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
+.+...+...+.||+-.. +|. ..+.+.+..|.+||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 43 a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~l------s~------~~~~~~~~~~~~~g~~~~l~kp 109 (153)
T 3cz5_A 43 AYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIF------TM------HQGSAFALKAFEAGASGYVTKS 109 (153)
T ss_dssp HHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE------ES------CCSHHHHHHHHHTTCSEEEETT
T ss_pred HHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEE------EC------CCCHHHHHHHHHCCCcEEEecC
Confidence 334445556787777433 343 35566677799999998 52 3333333444668888877765
No 41
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=57.56 E-value=39 Score=22.46 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=35.2
Q ss_pred HHHHhcCCcEEEEec-----CCCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 59 RTANCIKAALILVLT-----RGGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 59 ~~A~~~~a~aIvv~T-----~sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
+...+...+.|++-- .+|. ..+.+.+. |.+||+.+ |+ ..........+-.|+.-++.+.
T Consensus 48 ~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~-~~~~ii~l------s~------~~~~~~~~~~~~~g~~~~l~kp 112 (140)
T 3cg0_A 48 RCAPDLRPDIALVDIMLCGALDGVETAARLAAG-CNLPIIFI------TS------SQDVETFQRAKRVNPFGYLAKP 112 (140)
T ss_dssp HHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH-SCCCEEEE------EC------CCCHHHHHHHHTTCCSEEEEES
T ss_pred HHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC-CCCCEEEE------ec------CCCHHHHHHHHhcCCCEEEeCC
Confidence 333445678777753 2333 24455555 99999998 52 3333333445678888887765
No 42
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=57.25 E-value=59 Score=24.81 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=45.9
Q ss_pred HHHHHHhcCCcEEEEecC----CChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCC
Q 038539 57 AVRTANCIKAALILVLTR----GGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGS 131 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~----sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~ 131 (181)
|.+.......+.|++--. +|.. .+.+.+ .|.+|||.+ |+ .+......-.+-.|+.-++.+.
T Consensus 73 al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~-~~~~~iI~l------t~------~~~~~~~~~a~~~Ga~~yl~Kp- 138 (249)
T 3q9s_A 73 GLIKAREDHPDLILLDLGLPDFDGGDVVQRLRK-NSALPIIVL------TA------RDTVEEKVRLLGLGADDYLIKP- 138 (249)
T ss_dssp HHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHT-TCCCCEEEE------ES------CCSHHHHHHHHHHTCSEEEESS-
T ss_pred HHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHc-CCCCCEEEE------EC------CCCHHHHHHHHHCCCcEEEECC-
Confidence 344445567888777644 3333 344544 689999999 52 3433344445677998888876
Q ss_pred CCCCCccCHHHHHHHHHHHHHHc
Q 038539 132 ARASDEESTEETIEFALQHAMAK 154 (181)
Q Consensus 132 ~~~~~~~~~~~~i~~a~~~~~~~ 154 (181)
.+.++++ .+++.+.+.
T Consensus 139 ------~~~~~L~-~~i~~~l~~ 154 (249)
T 3q9s_A 139 ------FHPDELL-ARVKVQLRQ 154 (249)
T ss_dssp ------CCHHHHH-HHHHHHHCC
T ss_pred ------CCHHHHH-HHHHHHHhh
Confidence 3455544 444554443
No 43
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=56.67 E-value=41 Score=22.45 Aligned_cols=62 Identities=11% Similarity=0.082 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCcEEEEecC----CChH-HHHHHh--cCCCCCEEEEeecccccccccccCCChhh-Hhh-hhccCCcEEE
Q 038539 56 SAVRTANCIKAALILVLTR----GGTT-AKMVSK--YRPSMPILSVIVPEIKTDSIVWSCSDEAP-ATH-SLIFRGLVPV 126 (181)
Q Consensus 56 aa~~~A~~~~a~aIvv~T~----sG~t-a~~iSk--~RP~~pIiav~~~~~~t~~~~~~~~~~~~-ar~-l~l~~GV~p~ 126 (181)
.|.+...+.+.+.||+-.. +|.. .+.+.+ ..|.+||+.+ | ..... ... ..+-.|+.-+
T Consensus 41 ~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~------s-------~~~~~~~~~~~~~~~g~~~~ 107 (140)
T 3grc_A 41 QALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVV------S-------ANAREGELEFNSQPLAVSTW 107 (140)
T ss_dssp HHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEE------C-------TTHHHHHHHHCCTTTCCCEE
T ss_pred HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEE------e-------cCCChHHHHHHhhhcCCCEE
Confidence 3444455667888777533 3433 445555 5689999999 5 34333 223 5577899888
Q ss_pred ecCC
Q 038539 127 LGSG 130 (181)
Q Consensus 127 ~~~~ 130 (181)
+.+.
T Consensus 108 l~kP 111 (140)
T 3grc_A 108 LEKP 111 (140)
T ss_dssp ECSS
T ss_pred EeCC
Confidence 8776
No 44
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=56.62 E-value=39 Score=22.16 Aligned_cols=60 Identities=12% Similarity=0.230 Sum_probs=35.9
Q ss_pred HHHHhcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 59 RTANCIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 59 ~~A~~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
+...+...+.|++-- .+|.. .+.+.+..|..||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 41 ~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~------s~------~~~~~~~~~~~~~ga~~~l~Kp 105 (126)
T 1dbw_A 41 AFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVI------TG------HGDVPMAVEAMKAGAVDFIEKP 105 (126)
T ss_dssp HHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEE------EC------TTCHHHHHHHHHTTCSEEEESS
T ss_pred HHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE------EC------CCCHHHHHHHHHhCHHHheeCC
Confidence 334455667666542 34543 5567677799999998 52 2222223334567888888775
No 45
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=55.69 E-value=26 Score=23.59 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=36.2
Q ss_pred HHHHHh-cCCcEEEEecCCC-----h-HHHHHHh--cCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEec
Q 038539 58 VRTANC-IKAALILVLTRGG-----T-TAKMVSK--YRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLG 128 (181)
Q Consensus 58 ~~~A~~-~~a~aIvv~T~sG-----~-ta~~iSk--~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~ 128 (181)
.+...+ ...+.||+--.-. . ..+.+.+ ..|..||+.+ |+ ........-.+--|+.-++.
T Consensus 42 ~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~l------s~------~~~~~~~~~~~~~g~~~~l~ 109 (140)
T 3lua_A 42 YSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIA------TK------SDNPGYRHAALKFKVSDYIL 109 (140)
T ss_dssp HTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEE------ES------CCCHHHHHHHHHSCCSEEEE
T ss_pred HHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEE------eC------CCCHHHHHHHHHcCCCEEEE
Confidence 333344 5678777754422 2 2445656 6789999999 52 33223333345678888887
Q ss_pred CC
Q 038539 129 SG 130 (181)
Q Consensus 129 ~~ 130 (181)
+.
T Consensus 110 KP 111 (140)
T 3lua_A 110 KP 111 (140)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 46
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=54.69 E-value=42 Score=22.44 Aligned_cols=56 Identities=11% Similarity=0.149 Sum_probs=34.2
Q ss_pred hcCCcEEEEecC------CCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 63 CIKAALILVLTR------GGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 63 ~~~a~aIvv~T~------sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
+...+.|++--. +|. ..+.+.+..|.+||+.+ |+ ........-.+-.|+.-++.+.
T Consensus 48 ~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~------s~------~~~~~~~~~~~~~ga~~~l~KP 110 (136)
T 3kto_A 48 SDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVM------AS------SSDIPTAVRAMRASAADFIEKP 110 (136)
T ss_dssp CTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEE------ES------SCCHHHHHHHHHTTCSEEEESS
T ss_pred ccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEE------Ec------CCCHHHHHHHHHcChHHheeCC
Confidence 345676666532 232 24556666799999998 52 3333333444677898888775
No 47
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=54.53 E-value=45 Score=22.29 Aligned_cols=61 Identities=10% Similarity=0.154 Sum_probs=34.5
Q ss_pred HHHHHhcCCcEEEEecC----CCh-HHHHHHhcC--CCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 58 VRTANCIKAALILVLTR----GGT-TAKMVSKYR--PSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T~----sG~-ta~~iSk~R--P~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+.+.+.|++-.. +|. ..+.+.+.. |.+||+.+ |+ ........-.+-.|+.-++.+.
T Consensus 39 ~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~KP 106 (140)
T 3n53_A 39 LEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL------FS------SEHKEAIVNGLHSGADDYLTKP 106 (140)
T ss_dssp HHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEE------EC------C----CTTTTTTCCCSEEEESS
T ss_pred HHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEE------ec------CCCHHHHHHHHhcCCCeeeeCC
Confidence 33444556787777643 232 345566555 89999998 52 2222223334677888888775
No 48
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=53.48 E-value=47 Score=22.12 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=34.2
Q ss_pred HHHHhcCCcEEEEecCCChH-HHHHHhcCC-CCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 59 RTANCIKAALILVLTRGGTT-AKMVSKYRP-SMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 59 ~~A~~~~a~aIvv~T~sG~t-a~~iSk~RP-~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
....+...+.||....+|.. .+.+-+. | .+||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 56 ~~l~~~~~dlvi~~~~~g~~~~~~l~~~-~~~~~ii~l------s~------~~~~~~~~~~~~~g~~~~l~kP 116 (137)
T 2pln_A 56 YLMDIRNYDLVMVSDKNALSFVSRIKEK-HSSIVVLVS------SD------NPTSEEEVHAFEQGADDYIAKP 116 (137)
T ss_dssp HHHHHSCCSEEEECSTTHHHHHHHHHHH-STTSEEEEE------ES------SCCHHHHHHHHHTTCSEEEESS
T ss_pred HHHHcCCCCEEEEcCccHHHHHHHHHhc-CCCccEEEE------eC------CCCHHHHHHHHHcCCceeeeCC
Confidence 33345567877722334433 4455555 8 9999998 52 2322333344567888887765
No 49
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=53.28 E-value=51 Score=22.52 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=37.7
Q ss_pred HHHHHHhcCCcEEEEecC----CChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCC-cEEEecCC
Q 038539 57 AVRTANCIKAALILVLTR----GGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRG-LVPVLGSG 130 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~----sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~G-V~p~~~~~ 130 (181)
|.+...+...+.||+-.. +|.. .+.+.+..|.+|||.+ |+ ........-.+-.| +.-++.+.
T Consensus 50 a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~~l~KP 117 (153)
T 3hv2_A 50 ALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILL------TG------DPDLKLIAKAINEGEIYRYLSKP 117 (153)
T ss_dssp HHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE------CC------CCCHHHHHHHHHTTCCSEEECSS
T ss_pred HHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEE------EC------CCCHHHHHHHHhCCCcceEEeCC
Confidence 334445567888877543 3332 4566666799999998 52 33333333445667 88888775
No 50
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=53.21 E-value=43 Score=21.60 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=35.5
Q ss_pred HHhcCCcEEEEecC----CCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 61 ANCIKAALILVLTR----GGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 61 A~~~~a~aIvv~T~----sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
..+.+.+.|++--. +|. ..+.+.+..|..||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 43 ~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~KP 105 (120)
T 1tmy_A 43 YKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVC------SA------MGQQAMVIEAIKAGAKDFIVKP 105 (120)
T ss_dssp HHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEE------EC------TTCHHHHHHHHHTTCCEEEESS
T ss_pred HHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEE------eC------CCCHHHHHHHHHhCcceeEeCC
Confidence 33446787776432 443 35566666799999998 52 2333333334567888888765
No 51
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=52.57 E-value=15 Score=29.57 Aligned_cols=84 Identities=12% Similarity=0.042 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhcCCC-----------CCChHHHHHHHHHHHHHhcCCcEEEEecCCCh
Q 038539 9 GAYPEIAVQTMARICLEAENFINYGDLSKKIMETAPM-----------PMSPLESLASSAVRTANCIKAALILVLTRGGT 77 (181)
Q Consensus 9 G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~-----------~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ 77 (181)
|.=|.-++..+.+|++.+....+.. .+.......+. ..++.+.+... ++...+.++++||+..+|-.
T Consensus 34 Gmg~~aT~~~~~~i~~~~~~~~D~~-h~p~~~~s~~~i~~r~~~~~~~g~~~~~~l~~~-~~~L~~~Gad~IVIaCNTah 111 (268)
T 3s81_A 34 GMGPAATADMLEKFVELRHASCDQQ-HIPLIVSSIPDIPDRTACLLSGGPSPYRYLERY-LHMLEDAGAECIVIPCNTAH 111 (268)
T ss_dssp CSSHHHHHHHHHHHHHHSCCSSGGG-SCCEEEEECTTSCCHHHHHHHCCCCSHHHHHHH-HHHHHHTTCSEEECSCSGGG
T ss_pred cCCHHHHHHHHHHHHHhhHhhcCCC-CCCEEEeccCCHHHHHHHHHhCCchHHHHHHHH-HHHHHHcCCCEEEEeCCCHH
Confidence 4448999999999999876532211 00111011111 11233444444 44455679999999999876
Q ss_pred HHHHHHhcCCCCCEEEE
Q 038539 78 TAKMVSKYRPSMPILSV 94 (181)
Q Consensus 78 ta~~iSk~RP~~pIiav 94 (181)
.+.---+-+-..||+.+
T Consensus 112 ~~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 112 YWFDDLQNVAKARMISI 128 (268)
T ss_dssp GGHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHCCCCEEcc
Confidence 54322222336888876
No 52
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=52.53 E-value=76 Score=24.27 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=38.6
Q ss_pred HHHHHHhcCCcEEEEe----cCCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 57 AVRTANCIKAALILVL----TRGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~----T~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
|.+...+...+.|++- ..+|.. .+.|-+..|..||+++ |. ......+.-.+-.|+.-++.+.
T Consensus 165 al~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~l------t~------~~~~~~~~~~~~~G~~~~l~KP 231 (254)
T 2ayx_A 165 ALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGV------TA------NALAEEKQRCLESGMDSCLSKP 231 (254)
T ss_dssp HHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEE------ES------STTSHHHHHHHHCCCEEEEESS
T ss_pred HHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEE------EC------CCCHHHHHHHHHcCCceEEECC
Confidence 3344445567777764 235654 5566666689999999 52 3333344445678998888775
No 53
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=52.53 E-value=45 Score=21.68 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=34.6
Q ss_pred HHhcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 61 ANCIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 61 A~~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
..+...+.|++-- .+|.. .+.+.+..|.+||+.+ |+ .+......-.+-.|+..++.+.
T Consensus 43 ~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~KP 105 (124)
T 1srr_A 43 VTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM------TA------YGELDMIQESKELGALTHFAKP 105 (124)
T ss_dssp HHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE------ES------SCCHHHHHHHHHHTCCCEEESS
T ss_pred HhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE------Ec------cCchHHHHHHHhcChHhhccCC
Confidence 3444678777643 24443 5566666799999998 52 2222222333556888877665
No 54
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=52.21 E-value=15 Score=25.12 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCcEEEEecCC--------ChHHHHHHhcCCCCCEEEE
Q 038539 54 ASSAVRTANCIKAALILVLTRG--------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 54 a~aa~~~A~~~~a~aIvv~T~s--------G~ta~~iSk~RP~~pIiav 94 (181)
+....+.|. +++.||+-++. |.++..+.+.=| ||++.+
T Consensus 92 ~~~I~~~a~--~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~-~pVlvv 137 (138)
T 3idf_A 92 VEMVLEEAK--DYNLLIIGSSENSFLNKIFASHQDDFIQKAP-IPVLIV 137 (138)
T ss_dssp HHHHHHHHT--TCSEEEEECCTTSTTSSCCCCTTCHHHHHCS-SCEEEE
T ss_pred HHHHHHHHh--cCCEEEEeCCCcchHHHHhCcHHHHHHhcCC-CCEEEe
Confidence 344455555 89999988764 677777777654 999865
No 55
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=51.74 E-value=50 Score=21.92 Aligned_cols=61 Identities=8% Similarity=0.151 Sum_probs=36.4
Q ss_pred HHHHHhcCCcEEEEecC----CCh-HHHHHHh--cCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 58 VRTANCIKAALILVLTR----GGT-TAKMVSK--YRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T~----sG~-ta~~iSk--~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+...+.|++-.. +|. ..+.+-+ ..|.+||+.+ |+ ........-.+-.|+.-++.+.
T Consensus 47 ~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~kP 114 (143)
T 3cnb_A 47 GDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAM------TG------ALTDDNVSRIVALGAETCFGKP 114 (143)
T ss_dssp HHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEE------ES------SCCHHHHHHHHHTTCSEEEESS
T ss_pred HHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEE------eC------CCCHHHHHHHHhcCCcEEEeCC
Confidence 34444556788777543 333 2455655 4688999998 52 2223233334567888888765
No 56
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=50.59 E-value=53 Score=22.13 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=41.3
Q ss_pred cCCcEEEEecC-CCh----HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCcc
Q 038539 64 IKAALILVLTR-GGT----TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEE 138 (181)
Q Consensus 64 ~~a~aIvv~T~-sG~----ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~ 138 (181)
...+.||+--. .|. ..+.+.+..|.+|||.+ |+ ........-.+-.|+.-++.+. .
T Consensus 66 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~l------t~------~~~~~~~~~~~~~ga~~~l~Kp-------~ 126 (146)
T 4dad_A 66 DAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLV------TT------DASSQTLLDAMRAGVRDVLRWP-------L 126 (146)
T ss_dssp TTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEE------ES------CCCHHHHHHHHTTTEEEEEESS-------C
T ss_pred CCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEE------eC------CCCHHHHHHHHHhCCceeEcCC-------C
Confidence 46777776543 222 24456667799999998 52 2323333334678999888775 3
Q ss_pred CHHHHHHHHHHHHHHc
Q 038539 139 STEETIEFALQHAMAK 154 (181)
Q Consensus 139 ~~~~~i~~a~~~~~~~ 154 (181)
+.+++ ..+++.+.+.
T Consensus 127 ~~~~L-~~~i~~~~~~ 141 (146)
T 4dad_A 127 EPRAL-DDALKRAAAQ 141 (146)
T ss_dssp CHHHH-HHHHHHHHHT
T ss_pred CHHHH-HHHHHHHHhh
Confidence 34443 3444544443
No 57
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=50.46 E-value=54 Score=21.93 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=35.6
Q ss_pred hcCCcEEEEecC----CCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 63 CIKAALILVLTR----GGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 63 ~~~a~aIvv~T~----sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
....+.|++-.. +|. ..+.+-+..|.+||+.+ |+ ........-.+-.|+.-++.+.
T Consensus 47 ~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l------s~------~~~~~~~~~~~~~g~~~~l~kp 107 (143)
T 3jte_A 47 CNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIIL------TG------HGDLDNAILAMKEGAFEYLRKP 107 (143)
T ss_dssp TTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE------EC------TTCHHHHHHHHHTTCSEEEESS
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE------EC------CCCHHHHHHHHHhCcceeEeCC
Confidence 346787777543 343 35567777899999998 52 3333333344667888888765
No 58
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=49.60 E-value=73 Score=23.25 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=40.2
Q ss_pred HHHHHhcCCcEEEEecC----CChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 58 VRTANCIKAALILVLTR----GGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T~----sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+...+.|++--. +|.. .+.+-+..|.+||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 39 ~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~l------s~------~~~~~~~~~~~~~ga~~~l~Kp 104 (225)
T 1kgs_A 39 MYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLML------TA------LSDVEYRVKGLNMGADDYLPKP 104 (225)
T ss_dssp HHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEE------ES------SCHHHHHHHTCCCCCSEEEESS
T ss_pred HHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE------eC------CCCHHHHHHHHhCCccEEEeCC
Confidence 34445567787776532 4433 4566666799999999 52 4444455566788998888775
No 59
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=49.36 E-value=24 Score=23.66 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=35.2
Q ss_pred hcCCcEEEEecC----CC-hHHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 63 CIKAALILVLTR----GG-TTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 63 ~~~a~aIvv~T~----sG-~ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
+...+.|++-.. +| ...+.+-+..|.+||+.+ |+ ........-.+-.|+.-++.+.
T Consensus 57 ~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~KP 117 (135)
T 3snk_A 57 DTRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAV------SD------ELTSEQTRVLVRMNASDWLHKP 117 (135)
T ss_dssp TCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEE------ES------CCCHHHHHHHHHTTCSEEEESS
T ss_pred ccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEE------eC------CCCHHHHHHHHHcCcHhhccCC
Confidence 345677766432 33 336677777889999998 52 3333333444668888888775
No 60
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=49.33 E-value=53 Score=21.56 Aligned_cols=61 Identities=8% Similarity=-0.015 Sum_probs=34.8
Q ss_pred HHHHHHhcCCcEEEEecC----CChH-HHHHHhc--CCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecC
Q 038539 57 AVRTANCIKAALILVLTR----GGTT-AKMVSKY--RPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGS 129 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~----sG~t-a~~iSk~--RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~ 129 (181)
|.+...+.+.+.|++-.. +|.. .+.+.+. .|..||+.+ |+ .+.... ...+-.|+..++.+
T Consensus 39 a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~------s~------~~~~~~-~~~~~~g~~~~l~K 105 (133)
T 3nhm_A 39 GLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFV------SG------YAPRTE-GPADQPVPDAYLVK 105 (133)
T ss_dssp HHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEE------ES------CCC------TTSCCCSEEEES
T ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEE------eC------CCcHhH-HHHhhcCCceEEec
Confidence 344445567887777533 3433 4445554 468999999 52 222223 55677888888776
Q ss_pred C
Q 038539 130 G 130 (181)
Q Consensus 130 ~ 130 (181)
.
T Consensus 106 P 106 (133)
T 3nhm_A 106 P 106 (133)
T ss_dssp S
T ss_pred c
Confidence 5
No 61
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=49.32 E-value=61 Score=22.24 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=37.1
Q ss_pred HHHHHHhcCCcEEEEecC----CChH-HHHHHhcC--CCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecC
Q 038539 57 AVRTANCIKAALILVLTR----GGTT-AKMVSKYR--PSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGS 129 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~----sG~t-a~~iSk~R--P~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~ 129 (181)
|.+...+.+.++||+-.. +|.. .+.+-+.. |.+||+.+ |+ .+......-.+-.|+.-++.+
T Consensus 43 al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~------s~------~~~~~~~~~~~~~g~~~~l~K 110 (154)
T 3gt7_A 43 AVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILL------TI------LSDPRDVVRSLECGADDFITK 110 (154)
T ss_dssp HHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEE------EC------CCSHHHHHHHHHHCCSEEEES
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEE------EC------CCChHHHHHHHHCCCCEEEeC
Confidence 444555667888887643 3433 34444432 78999998 52 233333334456788888877
Q ss_pred C
Q 038539 130 G 130 (181)
Q Consensus 130 ~ 130 (181)
.
T Consensus 111 P 111 (154)
T 3gt7_A 111 P 111 (154)
T ss_dssp S
T ss_pred C
Confidence 5
No 62
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=49.15 E-value=52 Score=21.43 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=34.9
Q ss_pred HHHHHhcCCcEEEEecC----CChH-HHHHHh--cCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 58 VRTANCIKAALILVLTR----GGTT-AKMVSK--YRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T~----sG~t-a~~iSk--~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+...+.|++--. +|.. .+.+-+ ..|..||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 42 ~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~------s~------~~~~~~~~~~~~~ga~~~l~KP 109 (128)
T 1jbe_A 42 LNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMV------TA------EAKKENIIAAAQAGASGYVVKP 109 (128)
T ss_dssp HHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEE------ES------SCCHHHHHHHHHTTCSEEEESS
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEE------ec------CccHHHHHHHHHhCcCceeecC
Confidence 33444556787776433 4433 344544 3478999988 52 3323333334567888888765
No 63
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=48.22 E-value=59 Score=21.78 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=32.2
Q ss_pred cCCcEEEEecC-----CChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 64 IKAALILVLTR-----GGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 64 ~~a~aIvv~T~-----sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
...+.|++-.. +|.. .+.+.++ |.+||+.+ |+ ........-.+--|+.-++.+.
T Consensus 49 ~~~dlvi~D~~l~~~~~g~~~~~~l~~~-~~~~ii~l------s~------~~~~~~~~~~~~~g~~~~l~KP 108 (140)
T 3h5i_A 49 WYPDLILMDIELGEGMDGVQTALAIQQI-SELPVVFL------TA------HTEPAVVEKIRSVTAYGYVMKS 108 (140)
T ss_dssp CCCSEEEEESSCSSSCCHHHHHHHHHHH-CCCCEEEE------ES------SSSCCCCGGGGGSCEEEEEETT
T ss_pred CCCCEEEEeccCCCCCCHHHHHHHHHhC-CCCCEEEE------EC------CCCHHHHHHHHhCCCcEEEeCC
Confidence 56788877533 3332 4455544 99999998 42 2222223333556888888776
No 64
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=48.09 E-value=58 Score=21.59 Aligned_cols=61 Identities=18% Similarity=0.092 Sum_probs=36.8
Q ss_pred HHHHHhcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 58 VRTANCIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+...+.|++-- .+|.. .+.+.+..|..||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 40 l~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~------s~------~~~~~~~~~~~~~ga~~~l~KP 105 (132)
T 3crn_A 40 LAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMV------TG------YASLENSVFSLNAGADAYIMKP 105 (132)
T ss_dssp HHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEE------ES------CCCHHHHHHHHHTTCSEEEESS
T ss_pred HHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEE------ec------cccHHHHHHHHhccchhhccCC
Confidence 3344455678777642 24443 5566666789999998 52 2322233334567888888775
No 65
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=47.83 E-value=60 Score=21.75 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=37.9
Q ss_pred HHHHHHhcCCcEEEEecC----CChH-HHHHHh--cCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecC
Q 038539 57 AVRTANCIKAALILVLTR----GGTT-AKMVSK--YRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGS 129 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~----sG~t-a~~iSk--~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~ 129 (181)
|.+...+.+.++||+-.. +|.. .+.+.+ ..|.+||+++ |+ ........-.+-.|+.-++.+
T Consensus 43 a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~------s~------~~~~~~~~~~~~~ga~~~l~K 110 (144)
T 3kht_A 43 ALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVIL------TD------NVSDDRAKQCMAAGASSVVDK 110 (144)
T ss_dssp HHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEE------ET------TCCHHHHHHHHHTTCSEEEEC
T ss_pred HHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEE------eC------CCCHHHHHHHHHcCCCEEEEC
Confidence 444455667888777543 3332 445555 5689999999 52 333333334467788888877
Q ss_pred C
Q 038539 130 G 130 (181)
Q Consensus 130 ~ 130 (181)
.
T Consensus 111 p 111 (144)
T 3kht_A 111 S 111 (144)
T ss_dssp C
T ss_pred C
Confidence 5
No 66
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=47.28 E-value=18 Score=27.94 Aligned_cols=74 Identities=11% Similarity=0.081 Sum_probs=41.5
Q ss_pred CCcEEEEecCCChHHHHHHhc-C--------CCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCC
Q 038539 65 KAALILVLTRGGTTAKMVSKY-R--------PSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARAS 135 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~iSk~-R--------P~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~ 135 (181)
+.+.|| || |.+..+.+.++ + ..+||+|+ .+.|++.|. -+|+.+.+++..
T Consensus 37 ~~d~li-fT-S~naV~~~~~~l~~~~~~~~l~~~~i~aV---------------G~~Ta~aL~-~~G~~~~~~p~~---- 94 (229)
T 3p9z_A 37 PFNALI-FT-SKNAVFSLLETLKNSPKLKMLQNIPAYAL---------------SEPTAKTLQ-DHHFKVAFMGEK---- 94 (229)
T ss_dssp TCSEEE-ES-CHHHHHHHHHHTTTCHHHHHHHTSCEEES---------------SHHHHHHHH-HTTCCBCCCCC-----
T ss_pred cCCEEE-EE-CHHHHHHHHHHHHhccchHHHcCCcEEEE---------------CHHHHHHHH-HcCCCeeecCCc----
Confidence 356544 44 44555544322 2 46899988 588988887 579988777653
Q ss_pred CccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 038539 136 DEESTEETIEFALQHAMAKGLCRAGDSVVALHRM 169 (181)
Q Consensus 136 ~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~g~ 169 (181)
.+.+.+.+...+. + +|.+|+++.|.
T Consensus 95 --~~~e~L~~~l~~~------~-~~~~vL~~rg~ 119 (229)
T 3p9z_A 95 --AHGKEFVQEIFPL------L-EKKSVLYLRAK 119 (229)
T ss_dssp ----------CCHHH------H-TTCEEEEEEES
T ss_pred --ccHHHHHHHHHhh------C-CCCEEEEECCc
Confidence 2344433322111 1 57899999886
No 67
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=46.97 E-value=61 Score=21.59 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=36.3
Q ss_pred HHHHHHhcCCcEEEEecCCChH----HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 57 AVRTANCIKAALILVLTRGGTT----AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~sG~t----a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
+.+...+...+.|++-...+.. .+.+.+..|.+||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 40 a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~l------s~------~~~~~~~~~~~~~g~~~~l~kP 105 (142)
T 2qxy_A 40 AFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVL------SA------YVDKDLIINSVKAGAVDYILKP 105 (142)
T ss_dssp HHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEE------ES------CCCHHHHHHHHHHTCSCEEESS
T ss_pred HHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEEE------EC------CCCHHHHHHHHHCCcceeEeCC
Confidence 3444455677877775422322 3455566789999998 52 2333233334567887777664
No 68
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=46.74 E-value=99 Score=23.91 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=25.7
Q ss_pred HHHhcCCcEEEEecCC---------ChHHHHHHhcCCCCCEEEE
Q 038539 60 TANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 60 ~A~~~~a~aIvv~T~s---------G~ta~~iSk~RP~~pIiav 94 (181)
.+.+.+++.||+-+.. |.++..+.+.-| ||++.+
T Consensus 118 ~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~-~PVlvv 160 (294)
T 3loq_A 118 IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSK-VPVYIF 160 (294)
T ss_dssp HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCS-SCEEEE
T ss_pred eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCC-CCEEEe
Confidence 6778899999987763 455666776665 999966
No 69
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=46.63 E-value=61 Score=21.43 Aligned_cols=53 Identities=17% Similarity=0.312 Sum_probs=31.7
Q ss_pred CcEEEEecC----CChH-HHHHHhc-CCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 66 AALILVLTR----GGTT-AKMVSKY-RPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 66 a~aIvv~T~----sG~t-a~~iSk~-RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+.|++--. +|.. .+.+.+. .|..||+.+ |+ ........-.+-.|+.-++.+.
T Consensus 53 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~KP 111 (136)
T 3hdv_A 53 IGLMITDLRMQPESGLDLIRTIRASERAALSIIVV------SG------DTDVEEAVDVMHLGVVDFLLKP 111 (136)
T ss_dssp EEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEE------ES------SCCHHHHHHHHHTTCSEEEESS
T ss_pred CcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEE------eC------CCChHHHHHHHhCCcceEEeCC
Confidence 676666432 3433 4456555 689999998 52 2222223334567888888775
No 70
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=45.51 E-value=69 Score=21.79 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=34.3
Q ss_pred HhcCCcEEEEecC----CCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 62 NCIKAALILVLTR----GGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 62 ~~~~a~aIvv~T~----sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+.|++-.. +|. ..+.+.+..|.+||+.+ |+ ........-.+-.|+.-++.+.
T Consensus 44 ~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~l------s~------~~~~~~~~~~~~~g~~~~l~kP 105 (155)
T 1qkk_A 44 SADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILV------TG------HGDIPMAVQAIQDGAYDFIAKP 105 (155)
T ss_dssp CTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEE------EC------GGGHHHHHHHHHTTCCEEEESS
T ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE------EC------CCChHHHHHHHhcCCCeEEeCC
Confidence 3445777777543 333 24556666799999999 52 2222233334567888887765
No 71
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=45.06 E-value=60 Score=21.14 Aligned_cols=61 Identities=8% Similarity=-0.007 Sum_probs=35.2
Q ss_pred HHHHHHhcCCcEEEEecC----CChH-HHHHHhc--CCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecC
Q 038539 57 AVRTANCIKAALILVLTR----GGTT-AKMVSKY--RPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGS 129 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~----sG~t-a~~iSk~--RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~ 129 (181)
|.+...+.+.+.|++-.. +|.. .+.+.+. .|..||+.+ | ..........+..|+.-++.+
T Consensus 39 a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~------s-------~~~~~~~~~~~~~g~~~~l~K 105 (127)
T 3i42_A 39 ALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAV------S-------GFAKNDLGKEACELFDFYLEK 105 (127)
T ss_dssp HHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEE------E-------CC-CTTCCHHHHHHCSEEEES
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEE------E-------CCcchhHHHHHHHhhHHheeC
Confidence 344445667887777532 3433 4456555 688999998 4 222221134456677777766
Q ss_pred C
Q 038539 130 G 130 (181)
Q Consensus 130 ~ 130 (181)
.
T Consensus 106 P 106 (127)
T 3i42_A 106 P 106 (127)
T ss_dssp S
T ss_pred C
Confidence 5
No 72
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=44.69 E-value=59 Score=23.25 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=39.2
Q ss_pred HHHHHHhcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 57 AVRTANCIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
|.+...+...+.|++-- .+|.. .+.+-+..|.+||+.+ |. .+......-.+-.|+.-++.+.
T Consensus 43 al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~l------t~------~~~~~~~~~a~~~Ga~~~l~KP 109 (184)
T 3rqi_A 43 ALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVL------TG------YASIATAVQAVKDGADNYLAKP 109 (184)
T ss_dssp HHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEE------ES------SCCHHHHHHHHHHTCSEEEESS
T ss_pred HHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEE------eC------CCCHHHHHHHHHhCHHHheeCC
Confidence 34444566678777632 24544 5567667799999999 52 3333334445677888888775
No 73
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=43.31 E-value=92 Score=22.59 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=37.4
Q ss_pred HHHHHhcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 58 VRTANCIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+...+.|++-- .+|.. .+.+-+..|..||+.+ |. .+......-.+-.|+.-++.+.
T Consensus 44 l~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l------s~------~~~~~~~~~~~~~Ga~~~l~Kp 109 (215)
T 1a04_A 44 IELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF------SV------SNHEEDVVTALKRGADGYLLKD 109 (215)
T ss_dssp HHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEE------EC------CCCHHHHHHHHHTTCSEEEETT
T ss_pred HHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE------EC------CCCHHHHHHHHHcCCcEEEeCC
Confidence 3344455678777643 24543 5566666789999988 42 2223333334567998888775
No 74
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=42.32 E-value=73 Score=21.12 Aligned_cols=62 Identities=10% Similarity=0.066 Sum_probs=36.4
Q ss_pred HHHHHHhcCCcEEEEecC----CChH-HHHHHh--cCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecC
Q 038539 57 AVRTANCIKAALILVLTR----GGTT-AKMVSK--YRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGS 129 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~----sG~t-a~~iSk--~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~ 129 (181)
+.+...+...+.|++--. +|.. .+.+.+ ..|.+||+.+ |+ .+......-.+-.|+.-++.+
T Consensus 43 a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~------s~------~~~~~~~~~~~~~g~~~~l~k 110 (142)
T 3cg4_A 43 CIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVML------TA------KNAPDAKMIGLQEYVVDYITK 110 (142)
T ss_dssp HHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEE------EC------TTCCCCSSTTGGGGEEEEEES
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEE------EC------CCCHHHHHHHHhcCccEEEeC
Confidence 344445556787776533 3432 456666 6789999998 52 222222333456688888776
Q ss_pred C
Q 038539 130 G 130 (181)
Q Consensus 130 ~ 130 (181)
.
T Consensus 111 p 111 (142)
T 3cg4_A 111 P 111 (142)
T ss_dssp S
T ss_pred C
Confidence 5
No 75
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=41.72 E-value=96 Score=22.31 Aligned_cols=60 Identities=13% Similarity=0.200 Sum_probs=36.1
Q ss_pred HHHHhcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 59 RTANCIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 59 ~~A~~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
+...+...+.|++-- .+|.. .+.+-+..|.+||+.+ |. .+......-.+-.|+.-++.+.
T Consensus 42 ~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~l------s~------~~~~~~~~~a~~~Ga~~~l~Kp 106 (208)
T 1yio_A 42 EHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFI------TA------HGDIPMTVRAMKAGAIEFLPKP 106 (208)
T ss_dssp HHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEE------ES------CTTSCCCHHHHHTTEEEEEESS
T ss_pred HhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE------eC------CCCHHHHHHHHHCCCcEEEeCC
Confidence 333445567777643 24543 5566666799999999 52 2222223334567998888775
No 76
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=41.48 E-value=6.6 Score=30.80 Aligned_cols=84 Identities=14% Similarity=0.054 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCc---------chHHHHHhcC-CCC-CChHHHHHHHHHHHHHhcCCcEEEEecCCCh
Q 038539 9 GAYPEIAVQTMARICLEAENFINYG---------DLSKKIMETA-PMP-MSPLESLASSAVRTANCIKAALILVLTRGGT 77 (181)
Q Consensus 9 G~yPveaV~~M~~I~~~aE~~~~~~---------~~~~~~~~~~-~~~-~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ 77 (181)
|.=|.-++..+.+|++.+....+.. .-|.+..... ... .++.+.+. .+++.-.+.++++||+..+|..
T Consensus 10 Gmg~~at~~~~~~i~~~~~~~~~~~h~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~-~~~~~L~~~g~~~iviaCNTa~ 88 (231)
T 3ojc_A 10 GMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAKGDWQTAAQLLS-NAAISLKHAGAEVIVVCTNTMH 88 (231)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHCTTCCCCEEEEECCHHHHHHHHHTTCHHHHHHHHH-HHHHHHHHHTCCEEEECSSGGG
T ss_pred cCCHHHHHHHHHHHHHHhHHhcCCCCCccceeeCCChhhHHHHHHCCChhHHHHHHH-HHHHHHHhcCCCEEEEeCCchH
Confidence 4459999999999999987432111 0111111100 010 11223333 3334444569999999999866
Q ss_pred HHH-HHHhcCCCCCEEEE
Q 038539 78 TAK-MVSKYRPSMPILSV 94 (181)
Q Consensus 78 ta~-~iSk~RP~~pIiav 94 (181)
.+. .+.+ +-..||+.+
T Consensus 89 ~~~~~l~~-~~~iPvi~i 105 (231)
T 3ojc_A 89 KVADDIEA-ACGLPLLHI 105 (231)
T ss_dssp GGHHHHHH-HHCSCBCCH
T ss_pred HHHHHHHH-hCCCCEecc
Confidence 533 2322 235677765
No 77
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=40.82 E-value=14 Score=31.45 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=27.6
Q ss_pred hcCCcEEEEecCCChHHHHHHhc----CCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKY----RPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~----RP~~pIiav 94 (181)
...++++|+-|.||+||-.+|-- .|..+.+.+
T Consensus 244 ~~~aDGlIVSTPTGSTAYslSAGGPIv~P~~~~i~l 279 (365)
T 3pfn_A 244 TVQGDGVIVSTPTGSTAYAAAAGASMIHPNVPAIMI 279 (365)
T ss_dssp EECSSEEEEECGGGGGTHHHHTTCCEECTTSCCEEE
T ss_pred EEecCeEEEeCCccHHHHHHhCCCCccCCCCCeEEE
Confidence 56899999999999999999965 677777776
No 78
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=39.94 E-value=52 Score=24.41 Aligned_cols=57 Identities=7% Similarity=0.015 Sum_probs=36.2
Q ss_pred HhcCCcEEEEecC----CChH-HHHHHh-cCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 62 NCIKAALILVLTR----GGTT-AKMVSK-YRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 62 ~~~~a~aIvv~T~----sG~t-a~~iSk-~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+.|++--. +|.. .+.+-+ ..|.+||+.+ |. .+........+-.|+.-++.+.
T Consensus 51 ~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~l------t~------~~~~~~~~~~~~~Ga~~~l~Kp 113 (225)
T 3klo_A 51 ESRSIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVII------NC------PQDIEHKLLFKWNNLAGVFYID 113 (225)
T ss_dssp GGGGCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEE------EE------CTTCCHHHHTTSTTEEEEEETT
T ss_pred hccCCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEE------EC------CcchhHHHHHHHhCCCEEEecC
Confidence 3445777776432 3433 455656 6899999998 52 3333345556778998888875
No 79
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=39.82 E-value=86 Score=21.23 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=34.5
Q ss_pred HHHHhcC-CcEEEEecC----CChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCC-cEEEecCC
Q 038539 59 RTANCIK-AALILVLTR----GGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRG-LVPVLGSG 130 (181)
Q Consensus 59 ~~A~~~~-a~aIvv~T~----sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~G-V~p~~~~~ 130 (181)
+...+.+ .+.|++-.. +|.. .+.+-+..|..||+.+ |+ ........-.+-.| +.-++.+.
T Consensus 41 ~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~~l~KP 107 (151)
T 3kcn_A 41 ACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLML------TG------NQDLTTAMEAVNEGQVFRFLNKP 107 (151)
T ss_dssp HHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEE------EC------GGGHHHHHHHHHHTCCSEEEESS
T ss_pred HHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE------EC------CCCHHHHHHHHHcCCeeEEEcCC
Confidence 3344444 487777533 4433 5567777899999998 52 22222222334556 77777765
No 80
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=38.95 E-value=84 Score=23.05 Aligned_cols=75 Identities=20% Similarity=0.206 Sum_probs=41.9
Q ss_pred HHHhcCCcEEEEecC----CChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCC
Q 038539 60 TANCIKAALILVLTR----GGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARA 134 (181)
Q Consensus 60 ~A~~~~a~aIvv~T~----sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~ 134 (181)
...+...+.|++--. +|.. .+.+-+ +|.+||+.+ |+ .+........+-.|+..++.+.
T Consensus 43 ~~~~~~~dlvllD~~l~~~~g~~~~~~l~~-~~~~~ii~l------t~------~~~~~~~~~~~~~ga~~~l~Kp---- 105 (230)
T 2oqr_A 43 EFDRAGADIVLLDLMLPGMSGTDVCKQLRA-RSSVPVIMV------TA------RDSEIDKVVGLELGADDYVTKP---- 105 (230)
T ss_dssp HHHHHCCSEEEEESSCSSSCHHHHHHHHHH-HCSCSEEEE------EC------CHHHHHHHHHHHHCCSCCCCSS----
T ss_pred HHhccCCCEEEEECCCCCCCHHHHHHHHHc-CCCCCEEEE------eC------CCcHHHHHHHHHcCCCEEEeCC----
Confidence 334446787776532 4543 444544 489999999 52 3333334445667887777665
Q ss_pred CCccCHHHHHHHHHHHHHHcC
Q 038539 135 SDEESTEETIEFALQHAMAKG 155 (181)
Q Consensus 135 ~~~~~~~~~i~~a~~~~~~~g 155 (181)
.+.+++ ..+++.+.+.+
T Consensus 106 ---~~~~~l-~~~i~~~~~~~ 122 (230)
T 2oqr_A 106 ---YSAREL-IARIRAVLRRG 122 (230)
T ss_dssp ---CCHHHH-HHHHHHHHTTT
T ss_pred ---CCHHHH-HHHHHHHHhhc
Confidence 345543 34445544443
No 81
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=38.92 E-value=1.1e+02 Score=22.32 Aligned_cols=61 Identities=11% Similarity=0.128 Sum_probs=37.9
Q ss_pred HHHHHhcCCcEEEEecC----CChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 58 VRTANCIKAALILVLTR----GGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T~----sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+...+.|++--. +|.. .+.+.+..|.+||+.+ |. .+......-.+-.|+.-++.+.
T Consensus 44 ~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~l------t~------~~~~~~~~~~~~~ga~~~l~Kp 109 (233)
T 1ys7_A 44 LRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVL------SA------RSSVDDRVAGLEAGADDYLVKP 109 (233)
T ss_dssp HHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEE------EC------CCTTTCCCTTTTTTCSEEEESS
T ss_pred HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEE------Ec------CCCHHHHHHHHHcCCCEEEeCC
Confidence 33444556787776532 4433 4556666699999999 52 3333333445678888888775
No 82
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=38.30 E-value=87 Score=20.86 Aligned_cols=62 Identities=19% Similarity=0.164 Sum_probs=36.8
Q ss_pred HHHHHHhcCCcEEEEecC----CChH-HHHHHh--cCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecC
Q 038539 57 AVRTANCIKAALILVLTR----GGTT-AKMVSK--YRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGS 129 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~----sG~t-a~~iSk--~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~ 129 (181)
|.+...+...+.|++--. +|.. .+.+-+ ..|..||+.+ |+ .+......-.+-.|+.-++.+
T Consensus 40 al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~------t~------~~~~~~~~~~~~~ga~~~l~K 107 (136)
T 3t6k_A 40 ALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILML------TA------QGDISAKIAGFEAGANDYLAK 107 (136)
T ss_dssp HHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEE------EC------TTCHHHHHHHHHHTCSEEEET
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEE------ec------CCCHHHHHHHHhcCcceEEeC
Confidence 334445567888877543 4543 344443 2468999998 52 333333344466788888877
Q ss_pred C
Q 038539 130 G 130 (181)
Q Consensus 130 ~ 130 (181)
.
T Consensus 108 P 108 (136)
T 3t6k_A 108 P 108 (136)
T ss_dssp T
T ss_pred C
Confidence 6
No 83
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=37.13 E-value=37 Score=26.45 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCC---------ChHHHHHHhcCCCCCEEEE
Q 038539 52 SLASSAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 52 aia~aa~~~A~~~~a~aIvv~T~s---------G~ta~~iSk~RP~~pIiav 94 (181)
..+.+..+.+.+.+++.||+-+.. |.+++.+.+ +.+||++.+
T Consensus 238 ~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~-~~~~pvLvv 288 (294)
T 3loq_A 238 TPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIR-RSPVPVFVC 288 (294)
T ss_dssp CHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHH-HCSSCEEEE
T ss_pred CHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHh-cCCCCEEEE
Confidence 345566677888899999887762 455666665 567999977
No 84
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=36.88 E-value=93 Score=20.76 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=35.6
Q ss_pred HHHHhcCCcEEEEecC----CCh-HHHHHHh--cCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 59 RTANCIKAALILVLTR----GGT-TAKMVSK--YRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 59 ~~A~~~~a~aIvv~T~----sG~-ta~~iSk--~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
....+...+.||+-.. +|. ..+.+.+ ..|.+||+.+ |+ ........-.+-.|+.-++.+.
T Consensus 46 ~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~l------s~------~~~~~~~~~~~~~g~~~~l~kp 112 (147)
T 2zay_A 46 PVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIAL------SG------RATAKEEAQLLDMGFIDFIAKP 112 (147)
T ss_dssp HHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEE------ES------SCCHHHHHHHHHHTCSEEEESS
T ss_pred HHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEE------eC------CCCHHHHHHHHhCCCCEEEeCC
Confidence 3334456788877543 333 2445555 5689999999 52 2333333334567888887765
No 85
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=36.53 E-value=71 Score=24.78 Aligned_cols=41 Identities=24% Similarity=0.196 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCcEEEEecC---------CChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTR---------GGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~---------sG~ta~~iSk~RP~~pIiav 94 (181)
.+....+.|.+.+++.||+-+. -|.++..+.+ +.+||++.+
T Consensus 225 ~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~-~~~~pVLvv 274 (290)
T 3mt0_A 225 ADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLD-TLESDVLVL 274 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHT-TCSSEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHh-cCCCCEEEE
Confidence 4556667788889999999876 3778888876 456999977
No 86
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Probab=36.37 E-value=1.9e+02 Score=25.04 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=31.9
Q ss_pred CCcEEEEecCCChHHHHHHhcC--CCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 65 KAALILVLTRGGTTAKMVSKYR--PSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~iSk~R--P~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
+.+.||+ ..+|.++..+|.+. ...+.+.+ +|..++ .+...+|+. .+|..-+.++.
T Consensus 183 g~~~Vv~-aSsGNtG~AlA~~a~~~Gi~~~I~-~P~~~~--------s~~k~~~~~-~~GA~vi~v~g 239 (486)
T 1e5x_A 183 PVVGVGC-ASTGDTSAALSAYCASAGIPSIVF-LPANKI--------SMAQLVQPI-ANGAFVLSIDT 239 (486)
T ss_dssp CCCEEEE-CCCSHHHHHHHHHHHHHTCCEEEE-EEGGGC--------CHHHHHHHH-HTTCEEEEEES
T ss_pred CCeEEEE-cCCCHHHHHHHHHHHHcCCeEEEE-ECCCCC--------CHHHHHHHH-hCCCEEEEECC
Confidence 4566665 56999998887654 46776655 343223 223334444 34877766553
No 87
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=35.82 E-value=98 Score=20.73 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=33.9
Q ss_pred HHHHHHhcCCcEEEEec----CCCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 57 AVRTANCIKAALILVLT----RGGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T----~sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
+.+...+...+.|++-- .+|. ..+.+.+..|..||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 41 al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~l------s~------~~~~~~~~~~~~~ga~~~l~KP 107 (141)
T 3cu5_A 41 AIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFM------SG------YSDKEYLKAAIKFRAIRYVEKP 107 (141)
T ss_dssp HHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE------CC------STTTCCC------CCCEEECSS
T ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE------eC------CCcHHHHHHHHhCCccEEEeCC
Confidence 33444555678777643 2443 35566666799999999 52 2222222334567888888765
No 88
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=35.78 E-value=1e+02 Score=20.83 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=33.7
Q ss_pred hcCCcEEEEec----CCChH-HHHHHh--cCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 63 CIKAALILVLT----RGGTT-AKMVSK--YRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 63 ~~~a~aIvv~T----~sG~t-a~~iSk--~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
+...+.|++-- .+|.. .+.+.+ ..|.+||+.+ |+ ....-...-.+-.|+.-++.+.
T Consensus 57 ~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~------t~------~~~~~~~~~~~~~g~~~~l~KP 119 (152)
T 3heb_A 57 AGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVIL------TT------TDDQREIQRCYDLGANVYITKP 119 (152)
T ss_dssp TTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEE------ES------CCCHHHHHHHHHTTCSEEEECC
T ss_pred cCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEE------ec------CCCHHHHHHHHHCCCcEEEeCC
Confidence 34567666642 23433 555666 5689999999 52 3333333334567888888775
No 89
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=35.54 E-value=1e+02 Score=20.85 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=24.9
Q ss_pred HHHHHHhcCCcEEEEecC----CCh-HHHHHHhcCCCCCEEEE
Q 038539 57 AVRTANCIKAALILVLTR----GGT-TAKMVSKYRPSMPILSV 94 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T~----sG~-ta~~iSk~RP~~pIiav 94 (181)
|.....+...+.|++-.. +|. ..+.+.+..|.+||+.+
T Consensus 43 a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 85 (154)
T 2rjn_A 43 ALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVI 85 (154)
T ss_dssp HHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 344445556787777533 343 35566677799999998
No 90
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=33.47 E-value=47 Score=25.39 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCc---c------hHHHHHhcCCCCCChHHHHHH---HHHHHHHhcCCcEEEEecCCC
Q 038539 9 GAYPEIAVQTMARICLEAENFINYG---D------LSKKIMETAPMPMSPLESLAS---SAVRTANCIKAALILVLTRGG 76 (181)
Q Consensus 9 G~yPveaV~~M~~I~~~aE~~~~~~---~------~~~~~~~~~~~~~~~~~aia~---aa~~~A~~~~a~aIvv~T~sG 76 (181)
|.=|.-++.++.+|.+.+....... . .+... ... .. ..+.+.. .+++...+.++++|++..+|.
T Consensus 9 Gmgp~at~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~--~~-~~~~~~~~l~~~~~~L~~~g~d~iviaCnTa 84 (226)
T 2zsk_A 9 GTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEF-FQN--PE-GWEGRKKILINAAKALERAGAELIAFAANTP 84 (226)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHSSTTCCCCEEEEECCTHHH-HTC--TT-HHHHHHHHHHHHHHHHHHHTCSEEEESSSGG
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCCccCCeeEEeCCCHHHH-Hhh--cC-CcchHHHHHHHHHHHHHHcCCCEEEECCCcH
Confidence 5669999999999999986432211 0 01111 100 01 1233332 233333456899999999988
Q ss_pred hHH-HHHHhcCCCCCEEEE
Q 038539 77 TTA-KMVSKYRPSMPILSV 94 (181)
Q Consensus 77 ~ta-~~iSk~RP~~pIiav 94 (181)
... ..+.+ +-..||+.+
T Consensus 85 ~~~~~~l~~-~~~iPvi~i 102 (226)
T 2zsk_A 85 HLVFDDVQR-EVNVPMVSI 102 (226)
T ss_dssp GGGHHHHHH-HCSSCBCCH
T ss_pred HHHHHHHHH-hCCCCEecc
Confidence 653 33322 225666654
No 91
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=33.39 E-value=35 Score=24.73 Aligned_cols=29 Identities=10% Similarity=0.454 Sum_probs=22.6
Q ss_pred CCcEEEEecCCChHHHHH-----HhcCCCCCEEEE
Q 038539 65 KAALILVLTRGGTTAKMV-----SKYRPSMPILSV 94 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~i-----Sk~RP~~pIiav 94 (181)
+-+.+|+++.+|.|...+ +|-| .+|++++
T Consensus 96 ~~d~vI~iS~sG~t~~~~~~~~~ak~~-g~~vi~I 129 (183)
T 2xhz_A 96 PQDVVIAISNSGESSEITALIPVLKRL-HVPLICI 129 (183)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCCEEEE
Confidence 357899999999987654 4444 7899999
No 92
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=32.89 E-value=96 Score=19.74 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=35.4
Q ss_pred HHHHhcCCcEEEEecC----CChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 59 RTANCIKAALILVLTR----GGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 59 ~~A~~~~a~aIvv~T~----sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
....+...+.|++--. +|.. .+.+-+..|..||+.+ |+ .+......-.+--|+..++.+.
T Consensus 38 ~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~kp 102 (121)
T 2pl1_A 38 YYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL------TA------RESWQDKVEVLSAGADDYVTKP 102 (121)
T ss_dssp HHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE------ES------CCCHHHHHHHHHTTCSEEEESS
T ss_pred HHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE------ec------CCCHHHHHHHHHcCccceEECC
Confidence 3334556787776432 3432 4556566689999998 52 2322233334567888888765
No 93
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=32.36 E-value=77 Score=24.75 Aligned_cols=41 Identities=10% Similarity=0.068 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCcEEEEecCC---------ChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~s---------G~ta~~iSk~RP~~pIiav 94 (181)
.+...++.+.+.++++||+-++. |.++..+.+.- .||++.+
T Consensus 99 ~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~-~~PVlvv 148 (319)
T 3olq_A 99 PYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKC-PAPVWMV 148 (319)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHC-SSCEEEE
T ss_pred hHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcC-CCCEEEe
Confidence 34555666777789999987763 77888777654 5999966
No 94
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=31.51 E-value=1e+02 Score=19.67 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=35.5
Q ss_pred HHHHHhcCCcEEEEecC----CChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 58 VRTANCIKAALILVLTR----GGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T~----sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+...+.|++-.. +|.. .+.+-+ .|..||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 39 ~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~-~~~~~ii~~------s~------~~~~~~~~~~~~~ga~~~l~Kp 103 (122)
T 1zgz_A 39 REIMQNQSVDLILLDINLPDENGLMLTRALRE-RSTVGIILV------TG------RSDRIDRIVGLEMGADDYVTKP 103 (122)
T ss_dssp HHHHHHSCCSEEEEESCCSSSCHHHHHHHHHT-TCCCEEEEE------ES------SCCHHHHHHHHHHTCSEEEESS
T ss_pred HHHHhcCCCCEEEEeCCCCCCChHHHHHHHHh-cCCCCEEEE------EC------CCChhhHHHHHHhCHHHHccCC
Confidence 33444556787776533 4443 445555 789999988 52 3333333344567888888765
No 95
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=30.95 E-value=92 Score=19.81 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=32.1
Q ss_pred HhcCCcEEEEecCCCh-----HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 62 NCIKAALILVLTRGGT-----TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 62 ~~~~a~aIvv~T~sG~-----ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+.|++-..-.. ..+.+.+..|..||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 44 ~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~kp 105 (124)
T 1dc7_A 44 ASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM------TA------HSDLDAAVSAYQQGAFDYLPKP 105 (124)
T ss_dssp SSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCB------CC------STTSTTTTSSCTTCCCCCBCSS
T ss_pred hcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEE------ec------CCCHHHHHHHHhcCcceEeeCC
Confidence 3445676766543221 24566666799999988 52 2222222334556777776654
No 96
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=30.90 E-value=1.8e+02 Score=22.99 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCC----cEEEEecCCChHHHHHHhc--CCCCCEEEE
Q 038539 53 LASSAVRTANCIKA----ALILVLTRGGTTAKMVSKY--RPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a----~aIvv~T~sG~ta~~iSk~--RP~~pIiav 94 (181)
-+...+..+.+.+. +.||+.| +|.+++-+|.+ +...|.+.+
T Consensus 44 ~a~~~i~~a~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv 90 (303)
T 2v03_A 44 AALSMIVEAEKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLL 90 (303)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEE
Confidence 33444444444333 4455544 67777665532 234555543
No 97
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=30.70 E-value=1.2e+02 Score=20.31 Aligned_cols=62 Identities=11% Similarity=0.039 Sum_probs=35.8
Q ss_pred HHHHHHhcCCcEEEEec----CCChH-HHHHHh----cCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEe
Q 038539 57 AVRTANCIKAALILVLT----RGGTT-AKMVSK----YRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVL 127 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T----~sG~t-a~~iSk----~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~ 127 (181)
+.+...+.+.+.|++-- .+|.. .+.+-+ -.|..||+.+ |+ .+......-.+-.|+.-++
T Consensus 50 al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~------s~------~~~~~~~~~~~~~Ga~~~l 117 (143)
T 3m6m_D 50 VLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVL------SA------DVTPEAIRACEQAGARAFL 117 (143)
T ss_dssp HHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEE------ES------CCCHHHHHHHHHTTCSEEE
T ss_pred HHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEE------eC------CCCHHHHHHHHHcChhhee
Confidence 34444556788777743 24433 333432 2367899998 52 3333344445667898888
Q ss_pred cCC
Q 038539 128 GSG 130 (181)
Q Consensus 128 ~~~ 130 (181)
.+.
T Consensus 118 ~KP 120 (143)
T 3m6m_D 118 AKP 120 (143)
T ss_dssp ESS
T ss_pred eCC
Confidence 776
No 98
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=30.51 E-value=1.4e+02 Score=24.14 Aligned_cols=40 Identities=5% Similarity=-0.060 Sum_probs=31.3
Q ss_pred HHHHHHHHhcC-CcEEEEecCCChHHHHHHh----cCCCCCEEEE
Q 038539 55 SSAVRTANCIK-AALILVLTRGGTTAKMVSK----YRPSMPILSV 94 (181)
Q Consensus 55 ~aa~~~A~~~~-a~aIvv~T~sG~ta~~iSk----~RP~~pIiav 94 (181)
..+.++.++++ .+.||+.+-+|.+.--+++ ..|...|+++
T Consensus 166 t~~~Ei~~q~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigV 210 (325)
T 3dwg_A 166 GTGPELLADLPEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAA 210 (325)
T ss_dssp THHHHHHHHCTTCCEEEEECSSSHHHHHHHHHHHHHSTTCEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 34567777774 8999999999999765554 4799999988
No 99
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=30.10 E-value=1.8e+02 Score=22.87 Aligned_cols=76 Identities=13% Similarity=-0.002 Sum_probs=44.1
Q ss_pred HHHHHHHhcCCcEEEEe-----cCCChHH-HHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecC
Q 038539 56 SAVRTANCIKAALILVL-----TRGGTTA-KMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGS 129 (181)
Q Consensus 56 aa~~~A~~~~a~aIvv~-----T~sG~ta-~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~ 129 (181)
.|.+...+...+.|++- -.+|... +.|-+. +.+|||++ | .+... ..-.+--|+..++.+
T Consensus 196 eAl~~~~~~~~dlvl~D~~MPd~mdG~e~~~~ir~~-~~~piI~l------T-------~~~~~-~~~~~~~G~~~~l~K 260 (286)
T 3n0r_A 196 EALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGR-MDVPVIFI------T-------AFPER-LLTGERPEPTFLITK 260 (286)
T ss_dssp HHHHHHHHCCCSEEEEESCCTTSCCTTTTTHHHHHH-TTCCEEEE------E-------SCGGG-GCCSSSCCCSSEEES
T ss_pred HHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHhc-CCCCEEEE------e-------CCHHH-HHHHHhCCCcEEEeC
Confidence 44455556678877764 3466553 344333 39999999 6 33332 233566788888777
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHH
Q 038539 130 GSARASDEESTEETIEFALQHAMA 153 (181)
Q Consensus 130 ~~~~~~~~~~~~~~i~~a~~~~~~ 153 (181)
. -+.+++.......+..
T Consensus 261 P-------~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 261 P-------FQPETVKAAIGQALFF 277 (286)
T ss_dssp S-------CCHHHHHHHHHHHHHH
T ss_pred C-------CCHHHHHHHHHHHHHh
Confidence 5 3466655544444433
No 100
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Probab=30.03 E-value=83 Score=26.23 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCCCCCCEEEEEe-ecCCCcEE
Q 038539 146 FALQHAMAKGLCRAGDSVVALH-RMHIASVL 175 (181)
Q Consensus 146 ~a~~~~~~~g~~~~Gd~vvvv~-g~g~tn~i 175 (181)
.++..+.+.|.+++||+|++++ |.|.+-.+
T Consensus 283 l~L~~~l~~~~l~~Gd~ill~s~GsG~~~~~ 313 (396)
T 1xpm_A 283 LSLISLLENRDLQAGETIGLFSYGSGSVGEF 313 (396)
T ss_dssp HHHHHHHHHSCCCTTCEEEEEEEETTTEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEECcchhheE
Confidence 4566777779999999998765 55655433
No 101
>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665}
Probab=29.85 E-value=62 Score=26.25 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEEe-ecCCC
Q 038539 144 IEFALQHAMAKGLCRAGDSVVALH-RMHIA 172 (181)
Q Consensus 144 i~~a~~~~~~~g~~~~Gd~vvvv~-g~g~t 172 (181)
+-.+++.+.+.|.+++||+|+++. |.|.+
T Consensus 312 i~~~L~~~~~~g~~~~Gd~vll~~fG~G~t 341 (350)
T 4ewp_A 312 IPLAMHRLLEENPELSGGLALQIGFGAGLV 341 (350)
T ss_dssp HHHHHHHHHHHCGGGTTSEEEEEEEETTTE
T ss_pred HHHHHHHHHHhCCCCCcCEEEEEEEchhhE
Confidence 446778889999999999988774 55654
No 102
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=29.82 E-value=1.9e+02 Score=23.41 Aligned_cols=62 Identities=10% Similarity=0.123 Sum_probs=38.9
Q ss_pred HHHHHHhcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 57 AVRTANCIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
|.+...+...+.|++-- .+|.. .+.+-+..|..|||.+ |. .+......-.+-.|+.-++.+.
T Consensus 41 al~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~l------t~------~~~~~~~~~a~~~ga~~yl~KP 107 (394)
T 3eq2_A 41 GLQIFESEQPDLVICDLRMPQIDGLELIRRIRQTASETPIIVL------SG------AGVMSDAVEALRLGAADYLIKP 107 (394)
T ss_dssp HHHHHHHSCCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEEC---------------CHHHHHHHHHHHTCSEECCSS
T ss_pred HHHHHhhCCCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEEE------Ec------CCCHHHHHHHHhcChhhEEECC
Confidence 34444556678777643 36644 5667777899999998 52 3344444445677888888765
No 103
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=29.73 E-value=1.2e+02 Score=20.06 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=36.1
Q ss_pred HHHHHhcCCcEEEEec----CCCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 58 VRTANCIKAALILVLT----RGGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T----~sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+...+.|++-- .+|. ..+.+.+..|..||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 41 ~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l------s~------~~~~~~~~~~~~~ga~~~l~KP 106 (137)
T 3cfy_A 41 IQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA------TA------HGSVDLAVNLIQKGAEDFLEKP 106 (137)
T ss_dssp HHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE------ES------SCCHHHHHHHHHTTCSEEEESS
T ss_pred HHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE------Ee------cCcHHHHHHHHHCCccEEEeCC
Confidence 3333445678777642 2443 35567667799999988 52 2222223334567888888765
No 104
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A*
Probab=29.70 E-value=95 Score=24.98 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCCCCC--CEEEEEe-ecCCCcEEEE
Q 038539 144 IEFALQHAMAKGLCRAG--DSVVALH-RMHIASVLKI 177 (181)
Q Consensus 144 i~~a~~~~~~~g~~~~G--d~vvvv~-g~g~tn~i~i 177 (181)
+-.+++.+.+.|.+++| |+++++. |.|.+=..-+
T Consensus 282 i~~~L~~~~~~g~~~~G~~d~vll~~fG~G~t~~~~~ 318 (321)
T 3il6_A 282 IPILLDEAVENGTLILGSQQRVVLTGFGGGLTWGSLL 318 (321)
T ss_dssp HHHHHHHHHHTTSSCTTSCCEEEEEEEETTTEEEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCEEEEEEEehhheeEEEE
Confidence 34677888999999999 9988764 4465533333
No 105
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=29.01 E-value=1.9e+02 Score=21.99 Aligned_cols=65 Identities=9% Similarity=0.024 Sum_probs=39.4
Q ss_pred cCCcEEEEecCCChHHHHHHhcCC-----------CCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCC
Q 038539 64 IKAALILVLTRGGTTAKMVSKYRP-----------SMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSA 132 (181)
Q Consensus 64 ~~a~aIvv~T~sG~ta~~iSk~RP-----------~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~ 132 (181)
-+.++|+ || |+.+++.+.+.-+ .++++++ .+.+++.+. -.|+.+...+..
T Consensus 182 ~~~d~v~-ft-S~~~v~~~~~~~~~~~~~~~~l~~~~~~~aI---------------G~~Ta~~l~-~~G~~~~~~a~~- 242 (261)
T 1wcw_A 182 GEVDALA-FV-AAIQVEFLFEGAKDPKALREALNTRVKALAV---------------GRVTADALR-EWGVKPFYVDET- 242 (261)
T ss_dssp TCCSEEE-EC-SHHHHHHHHHHCSCHHHHHHHHHHTSEEEEE---------------SHHHHHHHH-HTTCCCSEEECS-
T ss_pred CCCCEEE-EE-CHHHHHHHHHHHhhccchhHHhhcCCEEEEE---------------CHHHHHHHH-HcCCCCceecCC-
Confidence 3567544 44 6677765544321 5778888 588887776 357666555442
Q ss_pred CCCCccCHHHHHHHHHHHHH
Q 038539 133 RASDEESTEETIEFALQHAM 152 (181)
Q Consensus 133 ~~~~~~~~~~~i~~a~~~~~ 152 (181)
.+.+.+++...++..
T Consensus 243 -----~~~~~l~~~l~~~~~ 257 (261)
T 1wcw_A 243 -----ERLGSLLQGFKRALQ 257 (261)
T ss_dssp -----CCHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHhh
Confidence 457777776655543
No 106
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=28.86 E-value=36 Score=26.03 Aligned_cols=84 Identities=18% Similarity=0.137 Sum_probs=44.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHhc-----------CCCCCChHHHHHHHHHHHHHhcCCcEEEEecCCCh
Q 038539 9 GAYPEIAVQTMARICLEAENFINYGDLSKKIMET-----------APMPMSPLESLASSAVRTANCIKAALILVLTRGGT 77 (181)
Q Consensus 9 G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~-----------~~~~~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ 77 (181)
|-=|.-++..+.+|.+......+.. +++....+ .....++.+.+...+.. ..+.++++|++..+|..
T Consensus 9 Gmg~~at~~~~~~i~~~~~~~~d~~-~~~~~~~~~~~i~~r~~~~~~~~~~~~~~l~~~~~~-l~~~g~d~iviaCnTa~ 86 (228)
T 1jfl_A 9 GMGPLATAELFRRIVIKTPAKRDQE-HPKVIIFNNPQIPDRTAYILGKGEDPRPQLIWTAKR-LEECGADFIIMPCNTAH 86 (228)
T ss_dssp CSSHHHHHHHHHHHHHTCCCSSGGG-SCCEEEEECTTSCCHHHHHTTSSCCCHHHHHHHHHH-HHHHTCSEEECSCTGGG
T ss_pred ccCHHHHHHHHHHHHHHHHhhcCCc-cCcEeEEeCCCHHHHHHHHHcCCchHHHHHHHHHHH-HHHcCCCEEEEcCccHH
Confidence 3448999999999998765432111 00100000 01122334444444444 45678999999998885
Q ss_pred HHHHHHhcCCCCCEEEE
Q 038539 78 TAKMVSKYRPSMPILSV 94 (181)
Q Consensus 78 ta~~iSk~RP~~pIiav 94 (181)
.+.---+-+-..||+.+
T Consensus 87 ~~~~~l~~~~~iPvi~i 103 (228)
T 1jfl_A 87 AFVEDIRKAIKIPIISM 103 (228)
T ss_dssp GGHHHHHHHCSSCBCCH
T ss_pred HHHHHHHHhCCCCEech
Confidence 43322222235666654
No 107
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=28.72 E-value=26 Score=27.80 Aligned_cols=67 Identities=12% Similarity=0.013 Sum_probs=38.3
Q ss_pred CCcEEEEecCCChHHHHHHhc--------CCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCC
Q 038539 65 KAALILVLTRGGTTAKMVSKY--------RPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASD 136 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~iSk~--------RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~ 136 (181)
..++|+ || |+.+++.+.+. -..++++++ .+.++..|. -.|+.+...+..
T Consensus 210 ~~d~v~-ft-S~~~v~~f~~~~~~~~~~~l~~~~i~aI---------------G~~Ta~~l~-~~G~~~~~va~~----- 266 (286)
T 1jr2_A 210 VPASIT-FF-SPSGLTYSLKHIQELSGDNIDQIKFAAI---------------GPTTARALA-AQGLPVSCTAES----- 266 (286)
T ss_dssp SCSEEE-ES-SHHHHHHHHHHHHHHHGGGGGGSEEEES---------------SHHHHHHHH-HTTCCCSEECSS-----
T ss_pred CCCEEE-EE-ChHHHHHHHHHHhhhccccccCCEEEEE---------------CHHHHHHHH-HcCCCceEecCC-----
Confidence 456544 44 55666544321 124667766 588888776 457766655543
Q ss_pred ccCHHHHHHHHHHHHHHcC
Q 038539 137 EESTEETIEFALQHAMAKG 155 (181)
Q Consensus 137 ~~~~~~~i~~a~~~~~~~g 155 (181)
.+.+.+++...+++.++|
T Consensus 267 -~~~~~ll~al~~~~~~~~ 284 (286)
T 1jr2_A 267 -PTPQALATGIRKALQPHG 284 (286)
T ss_dssp -SSHHHHHHHHHHHTC---
T ss_pred -CCHHHHHHHHHHHHhhcC
Confidence 467777776666654443
No 108
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=28.39 E-value=1.2e+02 Score=19.52 Aligned_cols=61 Identities=11% Similarity=0.065 Sum_probs=33.1
Q ss_pred HHHHHhcCCcEEEEec----CCChH-HHHHHhc--CCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 58 VRTANCIKAALILVLT----RGGTT-AKMVSKY--RPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T----~sG~t-a~~iSk~--RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+...+.|++-- .+|.. .+.+.+. .|..||+.+ |+ .+......-.+-.|+..++.+.
T Consensus 44 ~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~KP 111 (129)
T 1p6q_A 44 MKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIIL------TA------QGDRALVQKAAALGANNVLAKP 111 (129)
T ss_dssp HHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEEC------CS------CCCHHHHHHHHHHTCSCEECCC
T ss_pred HHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEE------eC------CCCHHHHHHHHHcCCCEEEECC
Confidence 3344455678777643 24433 3344333 368899988 52 2322222334556888777765
No 109
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=28.12 E-value=1.2e+02 Score=19.21 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=32.6
Q ss_pred HhcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 62 NCIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 62 ~~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+.|++-- .+|.. .+.+.+ .|..||+.+ |+ .+......-.+-.|+..++.+.
T Consensus 42 ~~~~~dlvl~D~~l~~~~g~~~~~~l~~-~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~Kp 102 (120)
T 2a9o_A 42 EAEQPDIIILDLMLPEIDGLEVAKTIRK-TSSVPILML------SA------KDSEFDKVIGLELGADDYVTKP 102 (120)
T ss_dssp HHHCCSEEEECSSCSSSCHHHHHHHHHH-HCCCCEEEE------ES------CCSHHHHHHHHHHTCSEEEESS
T ss_pred HhCCCCEEEEeccCCCCCHHHHHHHHHh-CCCCCEEEE------ec------CCchHHHHHHHhCCHhheEeCC
Confidence 344678777643 24443 444544 488999988 52 3333333334567888887765
No 110
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=27.89 E-value=91 Score=24.31 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCcEEEEecC--C-------ChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTR--G-------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~--s-------G~ta~~iSk~RP~~pIiav 94 (181)
.+....+.|.+.+++.||+-+. + |.+++.+.+ +..||++.+
T Consensus 254 ~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~-~~~~pVLvv 303 (319)
T 3olq_A 254 PEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLID-HIKCDLLAI 303 (319)
T ss_dssp HHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHT-TCCSEEEEE
T ss_pred cHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHh-hCCCCEEEE
Confidence 3566677888899999998885 2 456666665 567999977
No 111
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=27.87 E-value=2.4e+02 Score=22.68 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCC----cEEEEecCCChHHHHHHhc--CCCCCEEEE
Q 038539 51 ESLASSAVRTANCIKA----ALILVLTRGGTTAKMVSKY--RPSMPILSV 94 (181)
Q Consensus 51 ~aia~aa~~~A~~~~a----~aIvv~T~sG~ta~~iSk~--RP~~pIiav 94 (181)
+--+...+..|.+.+. +.||+. .+|.+++.+|.+ +-..|.+.+
T Consensus 54 ~R~a~~~l~~a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv 102 (325)
T 3dwg_A 54 DRPAVRMIEQAEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICV 102 (325)
T ss_dssp HHHHHHHHHHHHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEE
Confidence 3344455555555554 566664 578888866532 225555543
No 112
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=27.49 E-value=2.4e+02 Score=22.74 Aligned_cols=88 Identities=14% Similarity=0.158 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCCh----------HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccC
Q 038539 52 SLASSAVRTANCIKAALILVLTRGGT----------TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFR 121 (181)
Q Consensus 52 aia~aa~~~A~~~~a~aIvv~T~sG~----------ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~ 121 (181)
..+.++++.|++.++..|+-++.++. .++.+++ +..+||..- .| | +.+...+.+. +--
T Consensus 29 e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~-~~~VPValH------lD---H-g~~~e~i~~a-i~~ 96 (286)
T 1gvf_A 29 ETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYST-TYNMPLALH------LD---H-HESLDDIRRK-VHA 96 (286)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHH-HTTSCBEEE------EE---E-ECCHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHH-hCCCcEEEE------cC---C-CCCHHHHHHH-HHc
Confidence 46789999999999999999988763 2333444 467997755 44 1 1233444332 445
Q ss_pred CcEEEecCCCCCCCCccCHHHHHH---HHHHHHHHcCC
Q 038539 122 GLVPVLGSGSARASDEESTEETIE---FALQHAMAKGL 156 (181)
Q Consensus 122 GV~p~~~~~~~~~~~~~~~~~~i~---~a~~~~~~~g~ 156 (181)
|..+++++.+ ....++.++ +..+++...|.
T Consensus 97 GFtSVMiDgS-----~lp~eeNi~~Tk~vv~~ah~~gv 129 (286)
T 1gvf_A 97 GVRSAMIDGS-----HFPFAENVKLVKSVVDFCHSQDC 129 (286)
T ss_dssp TCCEEEECCT-----TSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEECCC-----CCCHHHHHHHHHHHHHHHHHcCC
Confidence 8888988775 245666665 55566666654
No 113
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=27.40 E-value=1.3e+02 Score=21.41 Aligned_cols=54 Identities=7% Similarity=0.109 Sum_probs=33.1
Q ss_pred CCcEEEEecC----CChHHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 65 KAALILVLTR----GGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 65 ~a~aIvv~T~----sG~ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
..+.|++--. +|...+.+.+..|.+||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 52 ~~dlvl~D~~mp~~~g~l~~~~~~~~~~~~ii~l------t~------~~~~~~~~~a~~~ga~~~l~KP 109 (196)
T 1qo0_D 52 PVDVVFTSIFQNRHHDEIAALLAAGTPRTTLVAL------VE------YESPAVLSQIIELECHGVITQP 109 (196)
T ss_dssp CCSEEEEECCSSTHHHHHHHHHHHSCTTCEEEEE------EC------CCSHHHHHHHHHHTCSEEEESS
T ss_pred CCCEEEEeCCCCccchHHHHHHhccCCCCCEEEE------Ec------CCChHHHHHHHHcCCCeeEecC
Confidence 5677766543 25545556555599999999 52 3333233334667888887765
No 114
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=27.04 E-value=1.3e+02 Score=19.53 Aligned_cols=58 Identities=22% Similarity=0.184 Sum_probs=33.9
Q ss_pred HHhcCCcEEEEecC----CChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 61 ANCIKAALILVLTR----GGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 61 A~~~~a~aIvv~T~----sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
..+...+.|++-.. +|.. .+.+.+..|..||+.+ |+ .+........+-.|+.-++.+.
T Consensus 43 ~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~KP 105 (136)
T 1mvo_A 43 AETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILML------TA------KDEEFDKVLGLELGADDYMTKP 105 (136)
T ss_dssp HHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEE------EC------TTCCCCHHHHHHTTCCEEEESS
T ss_pred HhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEE------EC------CCCHHHHHHHHhCCCCEEEECC
Confidence 33446777776532 3433 4556666689999988 42 2222222334567888887765
No 115
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=27.03 E-value=85 Score=23.65 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=23.1
Q ss_pred hcCCcEEEEecCCChHHHHHHhcCCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk~RP~~pIiav 94 (181)
+-+++.||. .|.||.+|-+. .+.||+-+
T Consensus 49 ~~~~dVIIS---RGgta~~lr~~-~~iPVV~I 76 (196)
T 2q5c_A 49 QDEVDAIIS---RGATSDYIKKS-VSIPSISI 76 (196)
T ss_dssp TTTCSEEEE---EHHHHHHHHTT-CSSCEEEE
T ss_pred cCCCeEEEE---CChHHHHHHHh-CCCCEEEE
Confidence 457887775 79999999986 78999988
No 116
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=27.02 E-value=1.6e+02 Score=21.72 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=39.7
Q ss_pred HhcCCcEEEEecC----CChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCC
Q 038539 62 NCIKAALILVLTR----GGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASD 136 (181)
Q Consensus 62 ~~~~a~aIvv~T~----sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~ 136 (181)
.+...+.|++--. +|.. .+.+- -+|.+||+.+ |. .+........+-.|+.-++.+.
T Consensus 46 ~~~~~dlvilD~~l~~~~g~~~~~~lr-~~~~~~ii~l------t~------~~~~~~~~~~~~~Ga~~~l~Kp------ 106 (238)
T 2gwr_A 46 RELRPDLVLLDLMLPGMNGIDVCRVLR-ADSGVPIVML------TA------KTDTVDVVLGLESGADDYIMKP------ 106 (238)
T ss_dssp HHHCCSEEEEESSCSSSCHHHHHHHHH-TTCCCCEEEE------EE------TTCCSCHHHHHHTTCCEEEEES------
T ss_pred HhCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCCcEEEE------eC------CCCHHHHHHHHHCCCCEEEeCC------
Confidence 3446787776543 4544 33343 3468999988 42 2222223334567888888765
Q ss_pred ccCHHHHHHHHHHHHHHcC
Q 038539 137 EESTEETIEFALQHAMAKG 155 (181)
Q Consensus 137 ~~~~~~~i~~a~~~~~~~g 155 (181)
.+.+++. .+++.+.+.+
T Consensus 107 -~~~~~L~-~~i~~~~~~~ 123 (238)
T 2gwr_A 107 -FKPKELV-ARVRARLRRN 123 (238)
T ss_dssp -CCHHHHH-HHHHHHCCCC
T ss_pred -CCHHHHH-HHHHHHHhhc
Confidence 3455543 4444444433
No 117
>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 2.35A {Clostridium novyi}
Probab=26.77 E-value=22 Score=30.15 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=23.5
Q ss_pred CcEEEEecCCChHHHHH-----HhcC-CCCCEEEE
Q 038539 66 AALILVLTRGGTTAKMV-----SKYR-PSMPILSV 94 (181)
Q Consensus 66 a~aIvv~T~sG~ta~~i-----Sk~R-P~~pIiav 94 (181)
-+.+|++|.||.|+..+ +|-+ +.++++++
T Consensus 109 ~dlvI~iS~SGeT~e~l~al~~ak~~~~Ga~~iaI 143 (393)
T 3odp_A 109 PTLLISCARSGNSPESTAAVTLAEKIVDDISHLII 143 (393)
T ss_dssp CEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHhhcCCCcEEEE
Confidence 46889999999997754 5554 58999999
No 118
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=26.76 E-value=36 Score=23.35 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=10.8
Q ss_pred CCCCCCCEEEEEe
Q 038539 155 GLCRAGDSVVALH 167 (181)
Q Consensus 155 g~~~~Gd~vvvv~ 167 (181)
.++++||.|++++
T Consensus 53 rl~~~GD~vII~a 65 (96)
T 1vc3_B 53 HLVKPGDLVILVA 65 (96)
T ss_dssp GTCCTTCEEEEEE
T ss_pred ccCCCCCEEEEEE
Confidence 3689999999876
No 119
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=26.63 E-value=34 Score=29.11 Aligned_cols=32 Identities=25% Similarity=0.272 Sum_probs=26.5
Q ss_pred hcCCcEEEEecCCChHHHHHHh----cCCCCCEEEE
Q 038539 63 CIKAALILVLTRGGTTAKMVSK----YRPSMPILSV 94 (181)
Q Consensus 63 ~~~a~aIvv~T~sG~ta~~iSk----~RP~~pIiav 94 (181)
...++++|+-|.+|+||-.+|- ..|..+.+.+
T Consensus 226 ~~~~DGliVsTPTGSTAYslSAGGpIv~P~~~~~~l 261 (388)
T 3afo_A 226 RTTADGVALATPTGSTAYSLSAGGSIVSPLVPAILM 261 (388)
T ss_dssp EEEEEEEEEECTGGGGTHHHHTTCCEECTTSCEEEE
T ss_pred eecCCeEEEeCCCcHHHHHHhccCCcccCCCCceEE
Confidence 3578999999999999999996 4567777766
No 120
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=26.49 E-value=1.3e+02 Score=21.74 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=34.0
Q ss_pred cCCcEEEEecC----CChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 64 IKAALILVLTR----GGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 64 ~~a~aIvv~T~----sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
...+.|++--. +|.. .+.+-+..|.+||+.+ |. .+......-.+-.|+.-++.+.
T Consensus 42 ~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l------t~------~~~~~~~~~~~~~ga~~~l~Kp 101 (220)
T 1p2f_A 42 EAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILL------TL------LSDDESVLKGFEAGADDYVTKP 101 (220)
T ss_dssp SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE------ES------CCSHHHHHHHHHHTCSEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE------Ec------CCCHHHHHHHHHcCCCEEEECC
Confidence 35677766432 4433 4556666699999999 52 3333333445677888888775
No 121
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=26.06 E-value=1.3e+02 Score=19.02 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=32.0
Q ss_pred hcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 63 CIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 63 ~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
+...+.+++-. .+|.. .+.+. ..|..||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 43 ~~~~dlvi~D~~l~~~~g~~~~~~l~-~~~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~Kp 102 (121)
T 1zh2_A 43 TRKPDLIILDLGLPDGDGIEFIRDLR-QWSAVPVIVL------SA------RSEESDKIAALDAGADDYLSKP 102 (121)
T ss_dssp HHCCSEEEEESEETTEEHHHHHHHHH-TTCCCCEEEE------ES------CCSHHHHHHHHHHTCSEEEESS
T ss_pred cCCCCEEEEeCCCCCCcHHHHHHHHH-hCCCCcEEEE------EC------CCCHHHHHHHHhcCCCeEEeCC
Confidence 34577776542 24443 34454 3688999988 52 3333333344567888887765
No 122
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=26.00 E-value=1.2e+02 Score=23.24 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=46.4
Q ss_pred CCcEEEEecCCChHHH--HHHhcC---CCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccC
Q 038539 65 KAALILVLTRGGTTAK--MVSKYR---PSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEES 139 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~--~iSk~R---P~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~ 139 (181)
+.+.||..|.+|--+. .+.+.. +.++|+|+ .+.|++.|.=. |+.+.+.+.. .+
T Consensus 58 ~~d~vifTS~~aV~~~~~~l~~~~~~~~~~~i~aV---------------G~~Ta~~L~~~-G~~~~~~~~~------~~ 115 (254)
T 4es6_A 58 RYCAVVVVSKPAARLGLERLDRYWPQPPQQTWCSV---------------GAATAAILEAY-GLDVTYPEQG------DD 115 (254)
T ss_dssp GCSEEEECSHHHHHHHHHHHHHHCSSCCSCEEEES---------------SHHHHHHHHHH-TCCEECCSSC------CS
T ss_pred CCCEEEEECHHHHHHHHHHHHHhCCCcccCEEEEE---------------CHHHHHHHHHc-CCCcccCCCC------CC
Confidence 4676665444333321 222322 34788888 58888888755 9988877652 34
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 038539 140 TEETIEFALQHAMAKGLCRAGDSVVALHRM 169 (181)
Q Consensus 140 ~~~~i~~a~~~~~~~g~~~~Gd~vvvv~g~ 169 (181)
.+.+++... +.+. ...+|.+|+++.|.
T Consensus 116 ~e~L~~~l~--~~~~-~~~~~~~vL~~rg~ 142 (254)
T 4es6_A 116 SEALLALPA--FQDS-LRVHDPKVLIMRGE 142 (254)
T ss_dssp HHHHHTCHH--HHHH-TCSSSCEEEEEECS
T ss_pred HHHHHHhHh--hccc-ccCCCCEEEEEcCC
Confidence 665544321 1110 12478899999886
No 123
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=25.97 E-value=1.3e+02 Score=18.97 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=35.0
Q ss_pred HHHHHhcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 58 VRTANCIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+.+.+.|++-- .+|.. .+.+.+..|..||+.+ | ...... .-.+-.|+.-++.+.
T Consensus 38 ~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~------s-------~~~~~~-~~~~~~g~~~~l~Kp 101 (116)
T 3a10_A 38 LKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL------T-------AYSHYR-SDMSSWAADEYVVKS 101 (116)
T ss_dssp HHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE------E-------SCGGGG-GCGGGGGSSEEEECC
T ss_pred HHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE------E-------CCcchH-HHHHhccccceEECC
Confidence 3344455678777643 24443 4566666789999998 5 332222 333456777777665
No 124
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=25.97 E-value=1.3e+02 Score=23.64 Aligned_cols=65 Identities=9% Similarity=0.045 Sum_probs=39.2
Q ss_pred cCCcEEEEecCCChHHHHHHhc-C---------C-CCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCC
Q 038539 64 IKAALILVLTRGGTTAKMVSKY-R---------P-SMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSA 132 (181)
Q Consensus 64 ~~a~aIvv~T~sG~ta~~iSk~-R---------P-~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~ 132 (181)
-+.++| +|| |..+++.+.+. . . .++++++ .+.|++.+. -.|+.+......
T Consensus 207 ~~~d~v-~Ft-S~~~v~~~~~~~~~~~~~~~~l~~~~~i~aI---------------G~~TA~al~-~~G~~~~~~a~~- 267 (286)
T 3d8t_A 207 GEVDAL-AFV-AAIQVEFLFEGAKDPKALREALNTRVKALAV---------------GRVTADALR-EWGVKPFYVDET- 267 (286)
T ss_dssp TCCSEE-EES-SHHHHHHHHHHCSCHHHHHHHHTTTSEEEEE---------------SHHHHHHHH-HTTCCCSEEECS-
T ss_pred CCCCEE-EEE-CHHHHHHHHHHHHhccchhhHhhcCCEEEEE---------------CHHHHHHHH-HcCCCceEEeCC-
Confidence 346654 454 56666655442 2 2 5778888 588887776 347666555442
Q ss_pred CCCCccCHHHHHHHHHHHHH
Q 038539 133 RASDEESTEETIEFALQHAM 152 (181)
Q Consensus 133 ~~~~~~~~~~~i~~a~~~~~ 152 (181)
.+.+.+++...+++.
T Consensus 268 -----~~~~~L~~~l~~~~~ 282 (286)
T 3d8t_A 268 -----ERLGSLLQGFKRALQ 282 (286)
T ss_dssp -----SCHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHh
Confidence 457777776666543
No 125
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A
Probab=25.67 E-value=1.1e+02 Score=24.77 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEEe-ecCCC
Q 038539 144 IEFALQHAMAKGLCRAGDSVVALH-RMHIA 172 (181)
Q Consensus 144 i~~a~~~~~~~g~~~~Gd~vvvv~-g~g~t 172 (181)
+-.++..+.+.|.+++||+++++. |.|.+
T Consensus 308 i~~~L~~~~~~g~~~~Gd~vll~~~G~G~t 337 (345)
T 3s21_A 308 VPIVLSKLKELGRLKKGDRIALLGIGSGLN 337 (345)
T ss_dssp HHHHHHHHHHHTCCCTTCEEEEEEEETTTE
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEEEChhhh
Confidence 346778888999999999988764 44654
No 126
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=25.20 E-value=2.2e+02 Score=22.07 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=22.8
Q ss_pred CCcEEEEecC---------CChHHHHHHhcCCCCCEEEE
Q 038539 65 KAALILVLTR---------GGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 65 ~a~aIvv~T~---------sG~ta~~iSk~RP~~pIiav 94 (181)
+++.||+-++ -|.++..+.+.- .||++.+
T Consensus 122 ~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~-~~PVlvv 159 (309)
T 3cis_A 122 DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHA-HCPVVII 159 (309)
T ss_dssp GEEEEEEESSCTTCCTTCCSCHHHHHHHHHC-SSCEEEE
T ss_pred CCCEEEECCCCCccccccccCcHHHHHHHhC-CCCEEEE
Confidence 7999998775 267888877765 7999977
No 127
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=25.01 E-value=1.4e+02 Score=19.03 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=34.1
Q ss_pred HHHHHhcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 58 VRTANCIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+...+.+.+.|++-- .+|.. .+.+-+. |..||+.+ |+ .+......-.+-.|+..++.+.
T Consensus 40 ~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~-~~~~ii~~------s~------~~~~~~~~~~~~~g~~~~l~KP 104 (123)
T 1xhf_A 40 HQILSEYDINLVIMDINLPGKNGLLLARELREQ-ANVALMFL------TG------RDNEVDKILGLEIGADDYITKP 104 (123)
T ss_dssp HHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHH-CCCEEEEE------ES------CCSHHHHHHHHHHTCSEEEESS
T ss_pred HHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhC-CCCcEEEE------EC------CCChHHHHHHHhcCcceEEeCC
Confidence 3344455678777643 24433 3444443 88999988 42 3333333334567888887765
No 128
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=24.97 E-value=36 Score=23.44 Aligned_cols=12 Identities=33% Similarity=0.437 Sum_probs=10.4
Q ss_pred CCCCCCEEEEEe
Q 038539 156 LCRAGDSVVALH 167 (181)
Q Consensus 156 ~~~~Gd~vvvv~ 167 (181)
++++||.|++++
T Consensus 52 l~~~GD~vII~a 63 (97)
T 1uhe_A 52 KVAIGDVVIILA 63 (97)
T ss_dssp GCCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 589999999876
No 129
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=24.75 E-value=2.4e+02 Score=21.62 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCcEEEEecCC---------ChHHHHHHhcCCCCCEEEE
Q 038539 53 LASSAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 53 ia~aa~~~A~~~~a~aIvv~T~s---------G~ta~~iSk~RP~~pIiav 94 (181)
.+....+.+...+++.||+-++. |.++..+.+. -.||++.+
T Consensus 77 ~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~-~~~PVlvv 126 (290)
T 3mt0_A 77 LHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRF-APCPVLMT 126 (290)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHH-CSSCEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhc-CCCCEEEe
Confidence 34455666777889999987753 6778877765 46999977
No 130
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}
Probab=24.65 E-value=70 Score=25.89 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEEe-ecCCC
Q 038539 144 IEFALQHAMAKGLCRAGDSVVALH-RMHIA 172 (181)
Q Consensus 144 i~~a~~~~~~~g~~~~Gd~vvvv~-g~g~t 172 (181)
+-.++..+.+.|.+++||+|+++. |.|.+
T Consensus 286 i~~~L~~~~~~g~~~~Gd~vll~~~G~G~t 315 (323)
T 3il3_A 286 VPVALDEAIRDGRIQRGQLLLLEAFGGGWT 315 (323)
T ss_dssp HHHHHHHHHHTTSSCTTCEEEEEEEETTTE
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEEEehhhe
Confidence 346778888999999999988774 54654
No 131
>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*
Probab=24.61 E-value=45 Score=26.75 Aligned_cols=28 Identities=21% Similarity=0.540 Sum_probs=21.4
Q ss_pred CcEEEEecCCChHHHHH-----HhcCCCCCEEEE
Q 038539 66 AALILVLTRGGTTAKMV-----SKYRPSMPILSV 94 (181)
Q Consensus 66 a~aIvv~T~sG~ta~~i-----Sk~RP~~pIiav 94 (181)
-+.+|++|.||.|...+ +|-+ .++++++
T Consensus 80 ~dlvI~iS~SG~T~e~~~a~~~ak~~-g~~~iaI 112 (302)
T 1tzb_A 80 DGLLIAVSYSGNTIETLYTVEYAKRR-RIPAVAI 112 (302)
T ss_dssp SSEEEEECSSSCCHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHC-CCeEEEE
Confidence 36789999999987654 3444 7899999
No 132
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=24.34 E-value=54 Score=23.76 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=22.7
Q ss_pred CCcEEEEecCCChHHHH-----HHhcCCCCCEEEE
Q 038539 65 KAALILVLTRGGTTAKM-----VSKYRPSMPILSV 94 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~-----iSk~RP~~pIiav 94 (181)
+-+.+|+++.+|.|... .+|-| .+||+++
T Consensus 87 ~~d~~i~iS~sG~t~~~~~~~~~ak~~-g~~vi~I 120 (187)
T 3sho_A 87 PTDLMIGVSVWRYLRDTVAALAGAAER-GVPTMAL 120 (187)
T ss_dssp TTEEEEEECCSSCCHHHHHHHHHHHHT-TCCEEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCCEEEE
Confidence 45789999999998664 34444 7999999
No 133
>3plx_B Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=23.76 E-value=39 Score=23.48 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=10.4
Q ss_pred CCCCCCEEEEEe
Q 038539 156 LCRAGDSVVALH 167 (181)
Q Consensus 156 ~~~~Gd~vvvv~ 167 (181)
++++||.||+++
T Consensus 53 l~~~GD~vII~a 64 (102)
T 3plx_B 53 LAEVGDKVIIMS 64 (102)
T ss_dssp GCCTTCEEEEEE
T ss_pred ccCCCCEEEEEE
Confidence 589999999885
No 134
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A
Probab=23.60 E-value=77 Score=26.13 Aligned_cols=29 Identities=21% Similarity=0.269 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEEe-ecCCC
Q 038539 144 IEFALQHAMAKGLCRAGDSVVALH-RMHIA 172 (181)
Q Consensus 144 i~~a~~~~~~~g~~~~Gd~vvvv~-g~g~t 172 (181)
+-.+++.+.+.|.+++||+|+++. |.|.+
T Consensus 328 ipl~L~~~~~~g~~~~Gd~vll~~fG~G~t 357 (365)
T 3gwa_A 328 LPLALETMRANGTLARGMRLMLLGFGVGYS 357 (365)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEEEEETTTE
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEEEehhhe
Confidence 345778889999999999988764 44554
No 135
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans}
Probab=23.59 E-value=77 Score=25.57 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEEe-ecCCC
Q 038539 144 IEFALQHAMAKGLCRAGDSVVALH-RMHIA 172 (181)
Q Consensus 144 i~~a~~~~~~~g~~~~Gd~vvvv~-g~g~t 172 (181)
+-.+++.+.+.|.+++||+|+++. |.|.+
T Consensus 296 i~~~L~~~~~~g~~~~Gd~vll~~~G~G~t 325 (333)
T 4dfe_A 296 IPLALDVAVRDGRIKRGQNVLIEGVGGGFT 325 (333)
T ss_dssp HHHHHHHHHHTTCSCTTCEEEEEEEETTTE
T ss_pred HHHHHHHHHHcCCCCCCCEEEEEEEchhhe
Confidence 346778888999999999988774 44654
No 136
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=23.57 E-value=1.5e+02 Score=22.98 Aligned_cols=36 Identities=25% Similarity=0.521 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCcEEEEecCC---------ChHHHHHHhcCCCCCEEEE
Q 038539 56 SAVRTANCIKAALILVLTRG---------GTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 56 aa~~~A~~~~a~aIvv~T~s---------G~ta~~iSk~RP~~pIiav 94 (181)
...+.|. +++.||+-+.. |.+++.+.+.= .||++.+
T Consensus 260 ~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~-~~pVlvv 304 (309)
T 3cis_A 260 QLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLA-RTPVIVA 304 (309)
T ss_dssp HHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHC-SSCEEEE
T ss_pred HHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcC-CCCEEEe
Confidence 3334444 89999998863 77888887664 5999977
No 137
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=23.13 E-value=1.5e+02 Score=18.88 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=33.6
Q ss_pred HhcCCcEEEEecC----CChH-HHHHHhcC--CCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 62 NCIKAALILVLTR----GGTT-AKMVSKYR--PSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 62 ~~~~a~aIvv~T~----sG~t-a~~iSk~R--P~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
.+.+.+.|++-.. +|.. .+.+-+.. |..||+.+ |+ .+......-.+-.|+..++.+.
T Consensus 43 ~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~------s~------~~~~~~~~~~~~~ga~~~l~Kp 106 (127)
T 2jba_A 43 NEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVML------TA------RGEEEDRVRGLETGADDCITKP 106 (127)
T ss_dssp SSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEE------EE------TTHHHHHHTTCCCSCSEEEEES
T ss_pred hccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEE------eC------CCCHHHHHHHHhcCCCeEEeCC
Confidence 3445677776432 3432 34444433 88999998 52 3333344445678988888765
No 138
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=22.61 E-value=1.4e+02 Score=23.66 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=31.2
Q ss_pred HHHHHHHhcC--CcEEEEecCCChHHHHHHh----cCCCCCEEEE
Q 038539 56 SAVRTANCIK--AALILVLTRGGTTAKMVSK----YRPSMPILSV 94 (181)
Q Consensus 56 aa~~~A~~~~--a~aIvv~T~sG~ta~~iSk----~RP~~pIiav 94 (181)
.+.++.++++ .+.||+.+-+|.+..-+++ ..|...|+++
T Consensus 155 ~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~v 199 (304)
T 1ve1_A 155 TGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAV 199 (304)
T ss_dssp HHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHHHcCCCCCEEEEecCCchhHHHHHHHHHHhCCCCEEEEE
Confidence 4567777774 7999999999999766554 4688999988
No 139
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=22.49 E-value=3.2e+02 Score=22.32 Aligned_cols=62 Identities=13% Similarity=0.179 Sum_probs=39.0
Q ss_pred HHHHHHhcCCcEEEEec----CCCh-HHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 57 AVRTANCIKAALILVLT----RGGT-TAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 57 a~~~A~~~~a~aIvv~T----~sG~-ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
|.+...+...+.|++-- .+|. ..+.+-+..|.+|||.+ |. .+......-.+-.|+.-++.+.
T Consensus 36 al~~l~~~~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~l------T~------~~~~~~~~~a~~~Ga~~yl~KP 102 (368)
T 3dzd_A 36 AEKKIKELFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVI------TG------HGSVDTAVKAIKKGAYEFLEKP 102 (368)
T ss_dssp HHHHHHHBCCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEE------EC------SSCCHHHHHHHHHTCCEEEESS
T ss_pred HHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEE------eC------CCCHHHHHHHHhcCcceEEeCC
Confidence 34444566778777632 3554 46678788899999998 52 2222222334567898888776
No 140
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=22.44 E-value=1.6e+02 Score=24.19 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=16.2
Q ss_pred EEEecCCChHH--HHHHhcCCCCCEEEE
Q 038539 69 ILVLTRGGTTA--KMVSKYRPSMPILSV 94 (181)
Q Consensus 69 Ivv~T~sG~ta--~~iSk~RP~~pIiav 94 (181)
|+-.|-+|.|+ ..+++..+ .+|+..
T Consensus 15 i~GptgsGKt~la~~La~~~~-~~iis~ 41 (316)
T 3foz_A 15 LMGPTASGKTALAIELRKILP-VELISV 41 (316)
T ss_dssp EECCTTSCHHHHHHHHHHHSC-EEEEEC
T ss_pred EECCCccCHHHHHHHHHHhCC-CcEEec
Confidence 44567789884 46776654 566655
No 141
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=22.40 E-value=48 Score=24.69 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=34.4
Q ss_pred HHHHhcCCcEEEEec----CCChH-HHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 59 RTANCIKAALILVLT----RGGTT-AKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 59 ~~A~~~~a~aIvv~T----~sG~t-a~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
+...+...+.|++-- .+|.. .+.+-+..|..||+.+ |+ .+......-.+-.|+.-++.+.
T Consensus 41 ~~l~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l------t~------~~~~~~~~~~~~~Ga~~~l~Kp 105 (225)
T 3c3w_A 41 ARVPAARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLIL------TS------YTSDEAMLDAILAGASGYVVKD 105 (225)
T ss_dssp HHHHHHCCSEEEECSEETTEEHHHHHHHHHHHCTTCEEEEG------GG------SSSHHHHHHHHHHTCCCHHHHH
T ss_pred HHHhhcCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEEEE------EC------CCCHHHHHHHHHCCCCEEEECC
Confidence 333445678777632 24443 4556666799999988 52 3333333344566776666543
No 142
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=22.08 E-value=1.9e+02 Score=22.17 Aligned_cols=82 Identities=18% Similarity=0.207 Sum_probs=35.2
Q ss_pred HHHHHhcCCcEEEEe--cCCCh----HHHHHHhcC--CCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecC
Q 038539 58 VRTANCIKAALILVL--TRGGT----TAKMVSKYR--PSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGS 129 (181)
Q Consensus 58 ~~~A~~~~a~aIvv~--T~sG~----ta~~iSk~R--P~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~ 129 (181)
++.+.+.+++.|++- +++|. .-.++.+.+ .+.||+|. .+ ..++.-++++. -.|+-.++.-
T Consensus 162 ~~~~~~~G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~------GG-----I~~~ed~~~~~-~~Gadgv~vg 229 (266)
T 2w6r_A 162 VVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS------GG-----AGKMEHFLEAF-LAGADAALAA 229 (266)
T ss_dssp HHHHHHTTCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEE------SC-----CCSHHHHHHHH-HHTCSEEEES
T ss_pred HHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEe------CC-----CCCHHHHHHHH-HcCCHHHHcc
Confidence 345567889988872 23342 123333333 37899987 22 14445555554 3577776655
Q ss_pred CCCCCCCccCHHHHHHHHHHHHHHcCC
Q 038539 130 GSARASDEESTEETIEFALQHAMAKGL 156 (181)
Q Consensus 130 ~~~~~~~~~~~~~~i~~a~~~~~~~g~ 156 (181)
... ...+..+..+.+++.++|+
T Consensus 230 sal-----~~~~~~~~~~~~~l~~~g~ 251 (266)
T 2w6r_A 230 SVF-----HFREIDMRELKEYLKKHGV 251 (266)
T ss_dssp TTT-----C------------------
T ss_pred HHH-----HcCCCCHHHHHHHHHHCCC
Confidence 432 1122235556667777776
No 143
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=21.96 E-value=1.6e+02 Score=25.22 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=31.2
Q ss_pred HHHHHHHHhc--CCcEEEEecCCChHHHHHHh----cCCCCCEEEE
Q 038539 55 SSAVRTANCI--KAALILVLTRGGTTAKMVSK----YRPSMPILSV 94 (181)
Q Consensus 55 ~aa~~~A~~~--~a~aIvv~T~sG~ta~~iSk----~RP~~pIiav 94 (181)
..+.++.+++ +.++||+..-+|.+.--+++ ..|.+.|+++
T Consensus 268 T~a~EI~eQl~~~~D~vVvpvG~GGtlaGi~~~lk~~~p~~kVigV 313 (430)
T 4aec_A 268 TTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGV 313 (430)
T ss_dssp THHHHHHHHTTSCEEEEEEECSSSHHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHHHHHHHcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 3456777776 47899999999998765554 4799999998
No 144
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=21.93 E-value=1.4e+02 Score=23.65 Aligned_cols=40 Identities=10% Similarity=0.014 Sum_probs=31.4
Q ss_pred HHHHHHHHhcC--CcEEEEecCCChHHHHHHh----cCCCCCEEEE
Q 038539 55 SSAVRTANCIK--AALILVLTRGGTTAKMVSK----YRPSMPILSV 94 (181)
Q Consensus 55 ~aa~~~A~~~~--a~aIvv~T~sG~ta~~iSk----~RP~~pIiav 94 (181)
..+.++.++++ .+.||+.+-+|.+..-+++ ..|...|+++
T Consensus 153 t~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigv 198 (303)
T 2v03_A 153 TTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGL 198 (303)
T ss_dssp THHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEE
T ss_pred CcHHHHHHHhCCCCCEEEEEeCccHhHHHHHHHHHHhCCCCEEEEE
Confidence 34567777774 7999999999999765553 4689999988
No 145
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=21.52 E-value=1.6e+02 Score=24.25 Aligned_cols=40 Identities=15% Similarity=0.170 Sum_probs=30.4
Q ss_pred HHHHHHHHhcC--CcEEEEecCCChHHHHHHh----cC-CCCCEEEE
Q 038539 55 SSAVRTANCIK--AALILVLTRGGTTAKMVSK----YR-PSMPILSV 94 (181)
Q Consensus 55 ~aa~~~A~~~~--a~aIvv~T~sG~ta~~iSk----~R-P~~pIiav 94 (181)
..+.++.++++ .+.||+.+-+|.+.--+++ .. |+++|+++
T Consensus 183 t~~~Ei~~q~~~~~D~vvvpvG~GG~~aGi~~~~k~~~~p~~~vigV 229 (364)
T 4h27_A 183 SIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAM 229 (364)
T ss_dssp HHHHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHhCCCCCeEEEE
Confidence 34567777774 6999999999999665443 33 88999988
No 146
>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A*
Probab=21.39 E-value=1.6e+02 Score=24.62 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=21.1
Q ss_pred HHHHHHHHc-CCCCCCCEEEEEe-ecCCCcE
Q 038539 146 FALQHAMAK-GLCRAGDSVVALH-RMHIASV 174 (181)
Q Consensus 146 ~a~~~~~~~-g~~~~Gd~vvvv~-g~g~tn~ 174 (181)
.++..+.+. |.+++||+|++++ |.|.+-.
T Consensus 288 l~L~~~l~~~g~~~~Gd~ill~s~GsG~~ae 318 (388)
T 3v4n_A 288 LGLISLLENATTLTAGNQIGLFSYGSGAVAE 318 (388)
T ss_dssp HHHHHHHHHCSSCCTTCEEEEEEEETTTEEE
T ss_pred HHHHHHHHhcCcCCCCCEEEEEEecCcceeE
Confidence 466677777 8899999988764 5565544
No 147
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=21.23 E-value=1.6e+02 Score=25.17 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=42.4
Q ss_pred EEEEecCCChHHH--HHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhc---------cCCcEEEecCCCCCCCC
Q 038539 68 LILVLTRGGTTAK--MVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLI---------FRGLVPVLGSGSARASD 136 (181)
Q Consensus 68 aIvv~T~sG~ta~--~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l---------~~GV~p~~~~~~~~~~~ 136 (181)
+|.-.|-+|.|+. .|++..+ ..||.. | +..+.|.+.+ ..|| |++.-+...-.-
T Consensus 6 ~i~GptgsGKttla~~La~~~~-~~iis~-------D-------s~QvYr~l~i~T~kp~~~E~~gv-~hhlid~~~~~~ 69 (409)
T 3eph_A 6 VIAGTTGVGKSQLSIQLAQKFN-GEVINS-------D-------SMQVYKDIPIITNKHPLQEREGI-PHHVMNHVDWSE 69 (409)
T ss_dssp EEEECSSSSHHHHHHHHHHHHT-EEEEEC-------C-------TTTTBSSCTTTTTCCCGGGTTTC-CEESCSCBCTTS
T ss_pred EEECcchhhHHHHHHHHHHHCC-CeEeec-------C-------ccceecccccccCCCCHHHHcCc-hhhcCCccChHh
Confidence 4556788999854 5666555 355544 2 3223332221 1233 544322111000
Q ss_pred ccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 038539 137 EESTEETIEFALQHAMAKGLCRAGDSVVALHRM 169 (181)
Q Consensus 137 ~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~g~ 169 (181)
.-+..+..+.|.+...+ +...|...|+|.|.
T Consensus 70 ~~s~~~F~~~a~~~i~~--i~~~g~~pilVGGT 100 (409)
T 3eph_A 70 EYYSHRFETECMNAIED--IHRRGKIPIVVGGT 100 (409)
T ss_dssp CCCHHHHHHHHHHHHHH--HHTTTCEEEEECSC
T ss_pred HhhHHHHHHHHHHHHHH--HHhcCCCEEEECCh
Confidence 12455566666554443 34567788888886
No 148
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=20.84 E-value=1.6e+02 Score=23.91 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHhc--CCcEEEEecCCChHHHHHHhc----CCCCCEEEE
Q 038539 57 AVRTANCI--KAALILVLTRGGTTAKMVSKY----RPSMPILSV 94 (181)
Q Consensus 57 a~~~A~~~--~a~aIvv~T~sG~ta~~iSk~----RP~~pIiav 94 (181)
+.++.+++ ..+.||+.+-+|.+.--++++ .|...|+++
T Consensus 167 ~~Ei~~q~~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigV 210 (334)
T 3tbh_A 167 GPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAV 210 (334)
T ss_dssp HHHHHHHTTSCCSEEEEECSSSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHhCCCCCEEEeccCCcHhHHHHHHHHHHhCCCCEEEEE
No 149
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=20.72 E-value=1.6e+02 Score=24.38 Aligned_cols=26 Identities=31% Similarity=0.164 Sum_probs=16.8
Q ss_pred EEEEecCCChHH--HHHHhcCCCCCEEEE
Q 038539 68 LILVLTRGGTTA--KMVSKYRPSMPILSV 94 (181)
Q Consensus 68 aIvv~T~sG~ta--~~iSk~RP~~pIiav 94 (181)
+|+=.|-+|.|. +.|++.-+ ++||..
T Consensus 11 ~I~GptgSGKTtla~~La~~l~-~~iis~ 38 (340)
T 3d3q_A 11 VIVGPTASGKTELSIEVAKKFN-GEIISG 38 (340)
T ss_dssp EEECSTTSSHHHHHHHHHHHTT-EEEEEC
T ss_pred EEECCCcCcHHHHHHHHHHHcC-Cceecc
Confidence 445568899884 56777554 556655
No 150
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A*
Probab=20.70 E-value=50 Score=25.87 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcCCCC------C-EEEEeecccccccccccCCChhhHhhhhccCCc
Q 038539 51 ESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSM------P-ILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGL 123 (181)
Q Consensus 51 ~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~~------p-Iiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV 123 (181)
..+|..|++. ++ +.-+++-.+|+|+..++++=+.. + |-++ | ++..++..|. ..|+
T Consensus 10 ~~IA~~Aa~~---I~-dg~~I~LgsGST~~~~~~~L~~~~~~~~l~~itvV------T-------nS~~~a~~l~-~~gi 71 (227)
T 1uj6_A 10 KEAAHAAIAY---VQ-DGMVVGLGTGSTARYAVLELARRLREGELKGVVGV------P-------TSRATEELAK-REGI 71 (227)
T ss_dssp HHHHHHHHTT---CC-TTCEEEECCSHHHHHHHHHHHHHHHTTSSCSCEEE------E-------SSHHHHHHHH-HTTC
T ss_pred HHHHHHHHHH---CC-CCCEEEEcCCHHHHHHHHHHhhhhhhcCCCCEEEE------C-------CcHHHHHHHH-hCCC
Confidence 3455555432 22 22345667788877766554322 4 5656 4 6777777776 5564
No 151
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=20.60 E-value=1.5e+02 Score=23.04 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=29.6
Q ss_pred CCcEEEEecCCChHHHHHHhcCCCCCEEEEeecccccccccccCCChhhHhhhhccCC
Q 038539 65 KAALILVLTRGGTTAKMVSKYRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRG 122 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~iSk~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~G 122 (181)
++++||. .|.||.+|-+. .+.||+-+ . .+.-.+.|-|...++
T Consensus 63 ~~dVIIS---RGgta~~Lr~~-~~iPVV~I------~------vs~~Dil~aL~~a~~ 104 (225)
T 2pju_A 63 RCDAIIA---AGSNGAYLKSR-LSVPVILI------K------PSGYDVLQFLAKAGK 104 (225)
T ss_dssp CCSEEEE---EHHHHHHHHTT-CSSCEEEE------C------CCHHHHHHHHHHTTC
T ss_pred CCeEEEe---CChHHHHHHhh-CCCCEEEe------c------CCHHHHHHHHHHHHh
Confidence 4787765 79999999986 68999988 2 145556665555443
No 152
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=20.54 E-value=82 Score=23.88 Aligned_cols=30 Identities=20% Similarity=0.563 Sum_probs=22.6
Q ss_pred CCcEEEEecCCChHHHHH-----Hhc-CCCCCEEEE
Q 038539 65 KAALILVLTRGGTTAKMV-----SKY-RPSMPILSV 94 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~i-----Sk~-RP~~pIiav 94 (181)
.-+.+|+++.||.|...+ +|- +..++|+++
T Consensus 106 ~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~I 141 (220)
T 3etn_A 106 ENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVI 141 (220)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 346899999999986643 343 248999999
No 153
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Probab=20.48 E-value=2.3e+02 Score=21.69 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhcCCCCCEEEE
Q 038539 47 MSPLESLASSAVRTANCIKAALILVLTRGGTTAKMVSKYRPSMPILSV 94 (181)
Q Consensus 47 ~~~~~aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~RP~~pIiav 94 (181)
....+.+...+.+....-+.+.+=+.+-+|..+..+++..|...++++
T Consensus 92 r~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~v 139 (276)
T 2b3t_A 92 RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAV 139 (276)
T ss_dssp CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEE
T ss_pred CchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEE
Confidence 334566666555543222345666789999999999999999999999
No 154
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=20.30 E-value=1.6e+02 Score=23.49 Aligned_cols=39 Identities=13% Similarity=0.019 Sum_probs=31.1
Q ss_pred HHHHHHHhc--CCcEEEEecCCChHHHHHHh----cCCCCCEEEE
Q 038539 56 SAVRTANCI--KAALILVLTRGGTTAKMVSK----YRPSMPILSV 94 (181)
Q Consensus 56 aa~~~A~~~--~a~aIvv~T~sG~ta~~iSk----~RP~~pIiav 94 (181)
.+.++.+++ +.+.||+.+-+|.+.--+++ ..|...|+++
T Consensus 161 ~~~Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigv 205 (322)
T 1z7w_A 161 TGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGV 205 (322)
T ss_dssp HHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEecCccHhHHHHHHHHHHcCCCCEEEEE
Confidence 456777777 37999999999999765554 4699999988
No 155
>1v8d_A Hypothetical protein (TT1679); X-RAY craytallography, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.16A {Thermus thermophilus} SCOP: c.140.1.1
Probab=20.23 E-value=89 Score=24.72 Aligned_cols=28 Identities=11% Similarity=-0.041 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHcCCCCCCCEEEEE
Q 038539 139 STEETIEFALQHAMAKGLCRAGDSVVAL 166 (181)
Q Consensus 139 ~~~~~i~~a~~~~~~~g~~~~Gd~vvvv 166 (181)
...+-...+++-+++...+++||.+|+=
T Consensus 42 ~i~~~~~~~l~Ell~~a~l~~G~ifVvG 69 (235)
T 1v8d_A 42 GIRRAAQRAAEEFLQAFPMAPGSLFVLG 69 (235)
T ss_dssp HHHHHHHHHHHHHHHHSCCCTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEe
Confidence 3555667788888999999999987763
No 156
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=20.19 E-value=1.9e+02 Score=18.89 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=32.3
Q ss_pred cCCcEEEEecC----CChH-HHHHHhcC--CCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCC
Q 038539 64 IKAALILVLTR----GGTT-AKMVSKYR--PSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSG 130 (181)
Q Consensus 64 ~~a~aIvv~T~----sG~t-a~~iSk~R--P~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~ 130 (181)
...+.|++-.. +|.. .+.+.+.. |.+||+.+ |+ ........-.+-.|+.-++.+.
T Consensus 61 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~------t~------~~~~~~~~~~~~~g~~~~l~kP 122 (149)
T 1k66_A 61 PRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIM------TT------SSNPKDIEICYSYSISSYIVKP 122 (149)
T ss_dssp CCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEE------ES------CCCHHHHHHHHHTTCSEEEECC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEE------eC------CCCHHHHHHHHHCCCCEEEeCC
Confidence 45777776433 3432 34444443 78999998 52 3333333344567888888765
No 157
>3sqz_A Putative hydroxymethylglutaryl-COA synthase; thiolase fold, HMG_COA synthase, transferase; HET: COA; 1.20A {Streptococcus mutans} PDB: 3leh_A
Probab=20.12 E-value=1.6e+02 Score=25.04 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=21.6
Q ss_pred HHHHHHHHc-CCCCCCCEEEEEe-ecCCCcEE
Q 038539 146 FALQHAMAK-GLCRAGDSVVALH-RMHIASVL 175 (181)
Q Consensus 146 ~a~~~~~~~-g~~~~Gd~vvvv~-g~g~tn~i 175 (181)
.++..+.+. |.+++||+|++++ |.|.+-.+
T Consensus 318 l~L~~~l~~~g~l~~Gd~ill~s~GsG~~ae~ 349 (425)
T 3sqz_A 318 LGLLSLLENSQNLVAGDKIALFSYGSGAVAEI 349 (425)
T ss_dssp HHHHHHHHHCSSCCTTCEEEEEEEETTTEEEE
T ss_pred HHHHHHHHhcCCCCCCCEEEEEcccCCcceEE
Confidence 566777777 8899999988764 66655443
No 158
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=20.04 E-value=66 Score=24.49 Aligned_cols=76 Identities=13% Similarity=0.284 Sum_probs=45.5
Q ss_pred CCcEEEEecCCChHHHHHHh----cCCCCCEEEEeecccccccccccCCChhhHhhhhccCCcEEEecCCCCCCCCccCH
Q 038539 65 KAALILVLTRGGTTAKMVSK----YRPSMPILSVIVPEIKTDSIVWSCSDEAPATHSLIFRGLVPVLGSGSARASDEEST 140 (181)
Q Consensus 65 ~a~aIvv~T~sG~ta~~iSk----~RP~~pIiav~~~~~~t~~~~~~~~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~ 140 (181)
+.+.||.. |....+.+.+ .-|.++|+|+ .+.|++.|.- +|+.|.+.+... .+.
T Consensus 50 ~~d~vift--S~~aV~~~~~~l~~~l~~~~~~aV---------------G~~Ta~~L~~-~G~~~~~~p~~~-----~~~ 106 (240)
T 3mw8_A 50 RADILIFI--STSAVSFATPWLKDQWPKATYYAV---------------GDATADALAL-QGITAERSPADS-----QAT 106 (240)
T ss_dssp TCSEEEEC--SHHHHHHHHHHHTTCCCSSEEEES---------------SHHHHHHHHH-TTCCCEECC--------CCG
T ss_pred CCCEEEEE--CHHHHHHHHHHHHhhCcCCeEEEE---------------CHHHHHHHHH-cCCCCccCCCCc-----CCH
Confidence 46765544 4444444332 2367889888 5888888875 699888877531 134
Q ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEeec
Q 038539 141 EETIEFALQHAMAKGLCRAGDSVVALHRM 169 (181)
Q Consensus 141 ~~~i~~a~~~~~~~g~~~~Gd~vvvv~g~ 169 (181)
+.+++. +..+ ..+|.+|+++.|.
T Consensus 107 e~L~~~----~~~~--~~~g~~vL~~rg~ 129 (240)
T 3mw8_A 107 EGLLTL----PSLE--QVSGKQIVIVRGK 129 (240)
T ss_dssp GGGGGC----GGGT--CCTTCEEEEEEES
T ss_pred HHHHHh----hhhc--cCCCCEEEEEeCC
Confidence 443332 1111 2478999999887
No 159
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=20.03 E-value=3e+02 Score=22.23 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCChHHHHHHhc--CCCCCEEEE
Q 038539 52 SLASSAVRTANCIKAALILVLTRGGTTAKMVSKY--RPSMPILSV 94 (181)
Q Consensus 52 aia~aa~~~A~~~~a~aIvv~T~sG~ta~~iSk~--RP~~pIiav 94 (181)
--+...+..+.+.+.+.||+. .+|.+++-+|.+ +-..+.+.+
T Consensus 63 R~a~~~l~~a~~~g~~~vv~~-SsGN~g~alA~~a~~~G~~~~iv 106 (351)
T 3aey_A 63 RGMTLAVSKAVEGGAQAVACA-STGNTAASAAAYAARAGILAIVV 106 (351)
T ss_dssp HHHHHHHHHHHHTTCSEEEES-CSSHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEe-CCCHHHHHHHHHHHHcCCCEEEE
Confidence 334445555556667777765 588887766533 235555544
No 160
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*
Probab=20.03 E-value=3.3e+02 Score=21.61 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcC--CcEEEEecCCChHHHHHH----hcCCCCCEEEE
Q 038539 54 ASSAVRTANCIK--AALILVLTRGGTTAKMVS----KYRPSMPILSV 94 (181)
Q Consensus 54 a~aa~~~A~~~~--a~aIvv~T~sG~ta~~iS----k~RP~~pIiav 94 (181)
...+.++.++++ .+.||+..-+|.|+.-++ ...|...|+++
T Consensus 168 ~t~~~Ei~~q~~~~~d~vv~~vGtGGt~~Gi~~~lk~~~~~~~vigV 214 (325)
T 1j0a_A 168 VRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGI 214 (325)
T ss_dssp HHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHhhCCCCCEEEEeCCchHhHHHHHHHHHhcCCCceEEEE
Confidence 345677888874 799999999999976555 45799999988
Done!